> 0 AceceDRAFT_3285 PFAM:_major_facilitator_superfamily_MFS_1;_KEGG:_cte:CT0198_MFS_transporter_family_protein major_facilitator_superfamily_MFS_1 EFL60788.1 11 MVNTDQNKQKKVLGLEWNIFFAGITSFLTDTTTKMVYAIMPLFLLSIGASKTELSLIEGIAESTASVLKALSGWWSDKIGKNKPFMVVGYAFTAILCPLFSIVTSPLQVLIIRFAERVGKGIRTAPRDSLIAGSSSDSKKGRSFGFHKAMDNSGAIVGPLLAFAILSVFPGDYRKVLLLSAIPGILGVLSIILFVKEAKRNKSDLPGKISFKDFPGRFYMFLAIAFVFTLGNSTDALLLVKANDIGIQAVFIPLVYLIFNSVSVIFAVPAGIISDKFGRERLIVFGYLLYSIIYFGFGKTNDKMAVILLFALYGLYSAATDGVQKALVSDLIDKNKRGTGLGIYNSLIGITLFPASFIAGILYDKIDNRAPFYFGSAMAFIASILMLGFYLKRRRNQLK Clostridia_Rainey_2010 Acetivibrio_cellulolyticus_CD2 Acetivibrio_cellulolyticus_CD2 AEDB01000034 30321..31520 Lucas,S.,_Han,J.,_Lapidus,A.,_Cheng,J.-F.,_Goodwin,L.,_Pitluck,S.,_Peters,L.,_Ovchinnikova,G.,_Held,B.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ivanova,N.,_Pagani,I.,_Chang,Y.-J.,_Jeffries,C.,_Mouttaki,H.,_He,Z.,_Zhou,J.,_Hemme,C.L._and_Woyke,T. NA 0:1200 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4085556Source_DNA_and_organism_available_from_Chris_Hemme_(hemmecl@ou.edu)Contacts:_Chris_Hemme_(hemmecl@ou.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Acetivibrio_cellulolyticus_CD2,_DSM_1870collection_date_::_Missinglat_lon_::_Missingdepth_::_Missingalt_elev_::_Missingcountry_::_Canadaenvironment_::_Missingnum_replicons_::_1ref_biomaterial_::_DSM_1870,_ATCC_33288,_NRC_2248biotic_relationship_::_Free_livingtrophic_level_::_Missingrel_to_oxygen_::_Facultativeisol_growth_condt_::_Missingsequencing_meth_::_WGSassembly_::_Newbler_v._2.3finishing_strategy_::_Improved_High-Quality_DraftGOLD_Stamp_ID_::_Gi03917Type_Strain_::_YesFunding_Program_::_DOEM_2007Gene_Calling_Method_::_Prodigal_1.4,_GenePRIMPIsolation_Site_::_Sewage_sludge;_CanadaCell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileTemperature_Optimum_::_35CGram_Staining_::_Gram-##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_Improved_High-Quality_DraftCurrent_Finishing_Status_::_Improved_High-Quality_DraftAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_30xSequencing_Technology_::_454/Illumina##Genome-Assembly-Data-END## NA 11-AUG-2010 Acetivibrio_cellulolyticus_CD2_ctg00204,_whole_genome_shotgun_sequence. NA Ruminococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acetivibrio_cellulolyticus_E1KH24_9FIRM.gb Acetivibrio_Patel_et_al._1980_emend._Robinson_and_Ritchie_1981 302591002 Unpublished NA AEDB01000034 NA NA Clostridiales_Prevot_1953 low_GC_Gram+ NA 1200 NA genomic_DNA NA CD2 NA Acetivibrio_cellulosolvens_Khan_et_al._1984 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 509191 Bacteria,_Firmicutes,_Clostridia,_Clostridiales,_Ruminococcaceae,_Acetivibrio Complete_sequence_of_Acetivibrio_cellulolyticus_CD2 NA AEDB01000034.1 TCATTTTAACTGATTTCTTCGTCTTTTCAAATAGAACCCCAGCATAAGGATGGAAGCTATAAATGCCATCGCTGAACCAAAGTAAAATGGGGCTCTGTTATCGATTTTATCGTATAGTATGCCAGCAATAAAACTTGCAGGAAATAAGGTAATGCCTATAAGGGAATTATAAATTCCCAATCCGGTACCCCTCTTGTTTTTATCTATAAGATCAGAAACAAGTGCTTTCTGCACGCCGTCAGTTGCCGCACTATAAAGTCCATATAATGCAAAAAGCAAAATTACTGCCATTTTATCATTGGTTTTTCCAAAACCGAAGTAAATAATGGAATAAAGCAGATATCCAAAAACGATTAATCTTTCCCGTCCGAATTTATCCGAGATTATGCCGGCGGGAACGGCAAAGATAACTGAGACTGAATTGAAAATCAGATATACAAGGGGAATAAAAACAGCCTGTATTCCGATATCGTTAGCTTTTACCAACAGAAGGGCGTCGGTAGAATTACCAAGTGTAAAAACAAAAGCAATTGCAAGGAACATATAAAATCTTCCTGGAAAGTCTTTAAATGAAATCTTTCCGGGGAGGTCAGATTTGTTCCTTTTAGCCTCCTTTACAAATAAAATGATAGACAGTACCCCAAGTATACCAGGTATTGCCGATAGCAATAATACCTTTCTGTAGTCGCCCGGAAACACTGATAAGATTGCAAAAGCCAACAGTGGTCCAACTATTGCGCCGCTATTATCCATTGCTTTATGAAATCCGAAACTTCTTCCTTTTTTACTATCACTTGACGATCCGGCAATAAGACTGTCTCTTGGTGCGGTTCTTATTCCTTTTCCGACCCTTTCGGCAAATCTGATTATTAAAACTTGAAGAGGTGAAGTTACTATTGAAAACAGCGGACATAAAATAGCGGTAAAAGCATAGCCTACAACCATAAAAGGTTTGTTTTTGCCTATTTTATCACTCCACCAGCCGGACAAAGCCTTAAGAACTGATGCAGTGCTTTCTGCGATTCCTTCAATAAGGGACAATTCTGTTTTTGACGCTCCTATAGAGAGTAGAAAAAGTGGCATTATGGCATAAACCATCTTTGTGGTTGTATCAGTCAAAAAGCTGGTTATTCCTGCAAAAAATATATTCCATTCAAGTCCTAAAACCTTTTTCTGCTTATTTTGATCGGTATTCACCAT > 1 APA01_14140 Major_facilitator_superfamily_(MFS) sugar_transporter YP_003187940.1 11 MAQANQDRPIVRDADDISALVNAGPQAGSHARMVVALALGGVFLDAYDLTTLSWGISDVQAHFGLSAFQTGLVAAALNAGTIVGSLVGGWLTDRIGRYAVFMADMVCFVIAALVAGFAPSASILIMARFAMGFGVGMDLPVAMAFLSEFSRLEGRGSKAAHAAAWCPTWYAASSACFVIVFILSYVLPVAHPDWLWRASLAFGAVPALVIILVRGRYMSESPVWIARRGDLERAADILRRSYGVNPVVCPARGQKPAVVHTDPWRLVRQPLLRRGLIIASMTLISSMSYNIIIFGLPTLLVSIVHANAAQVVVISIILNLVVAFPGGLLGVRLARSFRSRPIILAGYILQVVGIGTLALIGVPHGTVGVIAALGGFAAFLFAQGFGPGCQLMVYPTLSYPTELRGLGIGVARLISGIGGTLILLFFPWMNTHLGPAMFWLVLLAPLAGMMIAFFSRWDVFGYDPDMDPALRQQFVPARRNTGAAAPELLFSTDTRN alpha_subgroup Acetobacter_pasteurianus_IFO_3283-01 Acetobacter_pasteurianus_IFO_3283-01 NC_013209 1510290..1511780 Azuma,Y.,_Hosoyama,A.,_Matsutani,M.,_Furuya,N.,_Horikawa,H.,_Harada,T.,_Hirakawa,H.,_Kuhara,S.,_Matsushita,K.,_Fujita,N._and_Shirai,M. NA 0:1491 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_AP011121.This_work_was_done_by_Acetobacter_pasteurianus_genome_sequencingconsortium_including_Department_of_Microbiology_and_Immunology,Yamaguchi_University_School_of_Medicine,_National_Institute_ofTechnology_and_Evaluation,_Genetic_Resources_Technology,_Faculty_ofAgriculture,_Kyushu_University,_Department_of_Biological_Chemistry,Faculty_of_Agriculture,_Yamaguchi_University_and_Mizkan_GroupCorporation_Central_Research_Institute.COMPLETENESS:_full_length. NA 13-DEC-2011 Acetobacter_pasteurianus_IFO_3283-01,_complete_genome. NA alpha-1_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acetobacter_pasteurianus_C7JHV6_ACEP3.gb Ulvina 258541105 Nucleic_Acids_Res._37_(17),_5768-5783_(2009) NA NC_013209 NA NA Rhodospirillales_Pfennig_and_Truper_1971 purple_photosynthetic_bacteria_and_relatives 19638423 1491 NA genomic_DNA 634452 IFO_3283 NA Ulvina_pasteuriana NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 634452 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodospirillales,_Acetobacteraceae,_Acetobacter Whole-genome_analyses_reveal_genetic_instability_of_Acetobacter_pasteurianus NA NC_013209.1 TCAGTTCCTGGTATCGGTGGAAAATAACAATTCAGGCGCAGCGGCTCCTGTATTGCGCCGCGCAGGTACAAACTGCTGGCGCAATGCGGGGTCCATGTCGGGATCGTAACCGAACACGTCCCAGCGCGAGAAAAAGGCAATCATCATGCCTGCCAGCGGGGCAAGCAGCACCAGCCAGAACATTGCTGGACCAAGATGTGTATTCATCCATGGGAAAAAGAGAAGAATAAGCGTGCCACCAATGCCTGAAATCAGGCGGGCTACACCTATCCCTAGTCCACGCAATTCAGTGGGATAACTCAGGGTTGGATAAACCATAAGCTGGCATCCCGGACCGAAGCCTTGCGCAAACAGAAAAGCAGCAAACCCGCCAAGTGCCGCAATAACGCCTACAGTTCCATGAGGCACGCCAATCAGCGCTAATGTTCCAATACCAACCACCTGCAGAATGTAACCTGCCAGAATAATGGGGCGGGAGCGGAAACTACGCGCCAGACGTACCCCCAGCAGGCCACCGGGAAAGGCCACTACCAGGTTGAGAATAATGGAGATGACCACAACCTGCGCGGCATTTGCGTGCACAATGGAGACCAACAGCGTTGGCAAGCCGAATATAATGATGTTGTAAGACATGGAGCTAATTAGCGTCATGCTGGCAATAATCAGCCCGCGTCTTAGCAGTGGCTGGCGCACCAGTCGCCACGGATCTGTATGCACAACTGCAGGCTTTTGTCCTCGTGCCGGGCAGACAACAGGGTTCACACCATAAGAGCGGCGCAGAATATCAGCTGCACGCTCCAGATCTCCCCGGCGTGCAATCCATACAGGAGATTCACTCATATACCGCCCGCGCACCAAAATAATAACCAGTGCTGGCACCGCGCCAAATGCTAGAGATGCGCGCCACAACCAGTCTGGATGCGCAACTGGCAACACGTAGGACAGAATAAATACGATCACGAAGCAGGCGGATGAGGCAGCGTACCACGTGGGGCACCATGCGGCAGCGTGAGCTGCCTTGCTGCCCCGCCCTTCCAGCCGCGAAAATTCTGATAGAAACGCCATGGCCACAGGCAGGTCCATTCCTACCCCAAACCCCATGGCAAAACGCGCCATAATCAGAATACTTGCAGATGGTGCAAACCCCGCCACCAAAGCGGCAATAACAAAACACACCATATCGGCCATAAAAACAGCATAACGCCCGATACGGTCCGTTAACCATCCGCCTACAAGGCTGCCTACTATGGTTCCGGCATTTAGTGCTGCGGCAACAAGACCTGTCTGAAAGGCAGATAAACCAAAATGTGCCTGCACATCCGAAATACCCCAAGACAAGGTGGTAAGATCATAAGCATCCAGAAACACCCCGCCCAATGCCAGCGCTACAACCATGCGTGCGTGGCTTCCTGCCTGTGGGCCTGCGTTAACAAGGGCTGATATATCATCCGCATCACGCACGATGGGACGATCCTGATTGGCTTGAGCCAT > 2 APA07_25220 Major_facilitator_superfamily_(MFS) sugar_transporter BAI06724.1 11 MKSEKKRAQEAIQNLEISPYAKHVLWIAAFVSAICGGLYGYDTGIISGALLLITKDFHLTSGQEEIVTSAILVGAVIGAMGIANLSERFGRRVSVMVVTAVFVIGALACSYAPNLTSLIIARVFLGCAVGGATQVVPTYISELAPASKRGNLVTLFNVAIGIGIFLANLVGFTMREKWGWRPMISVAAIPAAFVFISMFFLPKSPRWTAENEGLESAVEQLGRVRSSRKVIQREINEIHANVVNLDEDERGWKGLKLPWVRPAVIAALGIAFFTQAGGLEMMIYYTPTFLSDAGFGSSSALLTSLGIALVYLIMTLLGCLFVDKIGRRRLVLIMGPGSVVSLIGLGIVFAMHPAQGSVGSWLIVAFLLLFMLFNSGGIQVVGWLLGAELFPLPMRAAATSIHAAMLWGADLLVTSTALTLVQTVSLGGTMWIYAAVNLASVLFVFFCVPETAGATLEDIETALRRGEFRPRVGQDPRIRSYDEEEEEAVGVTPAA alpha_subgroup Acetobacter_pasteurianus_IFO_3283-07 Acetobacter_pasteurianus_IFO_3283-07 AP011135 2731109..2732596 Azuma,Y.,_Hosoyama,A.,_Matsutani,M.,_Furuya,N.,_Horikawa,H.,_Harada,T.,_Hirakawa,H.,_Kuhara,S.,_Matsushita,K.,_Fujita,N._and_Shirai,M. NA 0:1488 This_work_was_done_by_Acetobacter_pasteurianus_genome_sequencingconsortium_including_Department_of_Microbiology_and_Immunology,Yamaguchi_University_School_of_Medicine,_National_Institute_ofTechnology_and_Evaluation,_Genetic_Resources_Technology,_Faculty_ofAgriculture,_Kyushu_University,_Department_of_Biological_Chemistry,Faculty_of_Agriculture,_Yamaguchi_University_and_Mizkan_GroupCorporation_Central_Research_Institute. NA 27-AUG-2009 Acetobacter_pasteurianus_IFO_3283-07_DNA,_complete_genome. NA alpha-1_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acetobacter_pasteurianus_C7JT41_ACEPA.gb Ulvina 256638295 Unpublished NA AP011135 NA NA Rhodospirillales_Pfennig_and_Truper_1971 purple_photosynthetic_bacteria_and_relatives NA 1488 NA genomic_DNA 634454 IFO_3283 NA Ulvina_pasteuriana NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 634454 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodospirillales,_Acetobacteraceae,_Acetobacter Whole-genome_analyses_reveal_genetic_instability_of_Acetobacter_pasteurianus NA AP011135.1 TTAGGCAGCAGGCGTAACCCCAACAGCTTCCTCTTCTTCCTCATCATAGGAACGAATGCGCGGGTCTTGCCCCACCCGCGGGCGGAATTCGCCACGGCGCAAAGCTGTTTCAATATCCTCCAATGTTGCACCAGCTGTTTCCGGCACACAGAAGAAAACAAACAAGACAGAAGCAAGGTTAACAGCTGCATAAATCCACATGGTGCCACCCAGAGAAACTGTCTGCACCAATGTCAAAGCCGTGGATGTTACTAGAAGGTCAGCCCCCCACAGCATGGCTGCATGAATACTAGTTGCCGCAGCACGCATAGGCAGCGGGAACAGCTCAGCGCCCAGCAGCCAGCCTACAACCTGAATACCGCCCGAGTTAAACAGCATAAACAGCAACAGGAAGGCCACAATCAGCCAACTTCCCACGCTACCCTGAGCCGGGTGCATGGCAAAAACAATGCCCAAGCCAATAAGGCTGACAACCGAACCCGGCCCCATAATCAGCACCAAACGCCGACGGCCAATTTTATCTACAAACAGGCAACCAAGCAGGGTCATGATCAGATAAACAAGCGCGATCCCCAAGCTGGTCAGTAGTGCTGATGAACTTCCAAACCCTGCGTCAGACAAAAAGGTGGGGGTATAGTAGATCATCATCTCCAACCCACCGGCTTGGGTGAAGAAAGCAATACCCAAAGCAGCTATCACCGCAGGGCGCACCCAAGGCAGCTTTAAACCTTTCCAGCCGCGCTCATCCTCATCCAGATTCACAACGTTAGCATGGATCTCATTGATCTCACGCTGAATGACCTTACGGGAGGAACGCACACGCCCGAGCTGTTCCACCGCAGATTCTAGCCCTTCATTTTCAGCAGTCCAGCGTGGGCTTTTGGGCAGAAAAAACATGCTGATAAAAACAAAGGCCGCAGGAATGGCAGCCACAGAAATCATGGGGCGCCATCCCCATTTTTCACGCATGGTAAAGCCAACCAGGTTGGCCAGAAAAATACCAATCCCAATTGCCACGTTAAACAGCGTTACCAGATTGCCGCGCTTACTGGCTGGAGCCAGTTCCGAAATATATGTTGGCACCACCTGCGTGGCACCACCTACCGCACAGCCCAAAAACACACGGGCAATAATCAGGCTGGTAAGGTTAGGTGCATAGGAACATGCTAATGCGCCAATTACAAAAACTGCGGTAACAACCATAACCGAAACACGGCGGCCAAAGCGTTCTGATAGGTTGGCAATGCCCATGGCACCAATAACGGCGCCCACCAGAATAGCTGATGTAACAATTTCCTCCTGACCAGAAGTCAGATGGAAATCTTTTGTAATAAGAAGAAGGGCACCAGAAATAATACCGGTATCGTAGCCGTAAAGACCGCCGCAAATGGCAGAAACAAATGCTGCAATCCACAACACGTGCTTGGCATACGGAGAAATTTCGAGATTTTGTATAGCTTCTTGAGCTCGTTTCTTTTCAGATTTCAT > 3 HMPREF0005_05655 NA major_facilitator_superfamily_transporter_protein EFV87180.1 11 MTLAYQGAAQSADEQARRKRTRRVVMASVAGNAMEWYDFFIYGTAAALVFGELFFPKGTDPLLGTMGAFAGFAVGFLARPLGGVVFGHIGDRYGRKLALEWTLGIMGAATFLIGLLPTYEQVGIWAPVAMVVLRVLQGAAAGGEWGGGVLLISEAVGGKRRGYFSSFSQLGVAGGFVLSSGVFMLAQQLPQDAFMSWGWRLPFLLSVLIFGIGLYIRKHIPESDEFVQAKKTAKRGMPAVEVFRRYPRQVFTAMGLRVAENGGSYIFLAFALAYGKFLGIPNDVMLGGVLASMFIELGTLVWFGHLSDRIGRRTVYLIGSAGLMLAAFPFFWLVQTREPVWIFLAFFLGNTVCHAAMIGTQPAYFAELFPPEVRYTGLALGHELASVFAGGLSPLIAMALLRKYESATPVAWFLVGMAAITVITLLLTREPARQESA beta_subgroup Achromobacter_xylosoxidans_C54 Achromobacter_xylosoxidans_C54 ACRC01000064 1133..2446 Earl,A.,_Ward,D.,_Feldgarden,M.,_Gevers,D.,_Sibley,C.D.,_Field,T.R.,_Grinwis,M.,_Eshaghurshan,C.S.,_Surette,M.,_Young,S.K.,_Zeng,Q.,_Gargeya,S.,_Fitzgerald,M.,_Haas,B.,_Abouelleil,A.,_Alvarado,L.,_Arachchi,H.M.,_Berlin,A.,_Brown,A.,_Chapman,S.B.,_Chen,Z.,_Dunbar,C.,_Freedman,E.,_Gearin,G.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Howarth,C.,_Larson,L.,_Lui,A.,_MacDonald,P.J.P.,_Mehta,T.,_Montmayeur,A.,_Murphy,C.,_Neiman,D.,_Pearson,M.,_Priest,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_White,J.,_Yandava,C.,_Nusbaum,C._and_Birren,B. NA 0:1314 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Source_DNA_provided_by_Christopher_D._Sibley,_Tyler_R._Field,Margot_Grinwis,_Christina_S._Eshaghurshan,_and_Michael_G._Surette.(Department_of_Microbiology_and_Infectious_Diseases,_University_ofCalgary,_Faculty_of_Medicine,_3330_Hospital_Drive_NW,_Calgary,Alberta_T2N_4N1).Bacteria_provided_by_Christopher_D._Sibley,_Tyler_R._Field,_MargotGrinwis,_Christina_S._Eshaghurshan,_and_Michael_G._Surette.(Department_of_Microbiology_and_Infectious_Diseases,_University_ofCalgary,_Faculty_of_Medicine,_3330_Hospital_Drive_NW,_Calgary,Alberta_T2N_4N1).Please_be_aware_that_the_annotation_is_done_automatically_withlittle_or_no_manual_curation.##Genome-Assembly-Data-START##Finishing_Goal_::_Noncontiguous_FinishedCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_v._2.1-PreRelease-4/28/2009Assembly_Name_::_Achr_xylo_C54_V2Genome_Coverage_::_16xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 11-JAN-2011 Achromobacter_xylosoxidans_C54_cont1.64,_whole_genome_shotgun_sequence. NA Alcaligenaceae_De_Ley_et_al._1986 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Achromobacter_xylosoxidans_E5U1K5_ALCXX.gb Achromobacter_Yabuuchi_and_Yano_1981_emend._Yabuuchi_et_al._1998 317407189 Unpublished NA ACRC01000064 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1314 NA genomic_DNA NA C54 NA Flavobacterium_sp._650 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 562971 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Alcaligenaceae,_Achromobacter The_Genome_Sequence_of_Achromobacter_xylosoxidans_strain_C54 NA ACRC01000064.1 ATGACGTTGGCATACCAGGGCGCGGCGCAGAGCGCCGACGAGCAGGCCCGCAGGAAGCGCACGCGGCGGGTGGTGATGGCGTCCGTCGCCGGCAACGCGATGGAGTGGTACGACTTTTTCATCTATGGCACCGCGGCGGCGCTGGTGTTCGGCGAGCTGTTCTTTCCCAAGGGCACCGACCCGCTGCTGGGCACCATGGGCGCCTTCGCCGGCTTTGCCGTGGGCTTCCTGGCGCGGCCGCTGGGCGGCGTGGTGTTCGGCCACATCGGCGACCGCTACGGCCGCAAGCTGGCGCTGGAATGGACGCTGGGCATCATGGGCGCGGCCACTTTCCTGATCGGGCTGTTGCCCACCTACGAACAGGTCGGCATCTGGGCGCCGGTGGCGATGGTGGTGCTGCGCGTGTTGCAGGGCGCGGCGGCCGGCGGCGAATGGGGCGGCGGCGTGCTGCTCATCAGCGAGGCGGTGGGCGGCAAGCGCCGCGGCTATTTCTCGTCGTTCAGCCAGTTGGGCGTGGCCGGCGGCTTCGTGCTGTCATCGGGCGTTTTCATGCTGGCTCAGCAGCTGCCGCAGGACGCCTTCATGAGCTGGGGCTGGCGCCTGCCGTTCCTGTTGAGCGTGCTGATCTTCGGCATCGGCCTGTACATCCGCAAGCACATCCCGGAAAGCGACGAGTTCGTGCAGGCCAAGAAGACCGCCAAGCGCGGCATGCCGGCGGTGGAAGTGTTCCGCCGCTATCCGCGCCAGGTGTTCACCGCCATGGGGCTGCGGGTGGCGGAGAACGGCGGTTCGTACATCTTCCTGGCGTTCGCGCTGGCCTACGGCAAGTTCCTGGGGATTCCCAACGACGTGATGCTGGGCGGGGTGCTGGCGTCCATGTTCATCGAACTGGGCACGCTGGTGTGGTTCGGCCACCTGTCGGACCGGATCGGCCGGCGCACCGTCTACCTGATCGGCTCGGCCGGGCTGATGCTGGCGGCGTTTCCGTTCTTCTGGCTGGTGCAGACCAGGGAGCCGGTGTGGATCTTCCTGGCGTTCTTCCTGGGCAACACGGTCTGCCACGCCGCCATGATCGGCACCCAGCCGGCGTACTTCGCCGAGCTGTTCCCGCCCGAGGTGCGCTACACCGGCCTGGCGCTGGGCCACGAACTGGCCTCGGTGTTCGCCGGCGGCCTGTCGCCGCTGATCGCCATGGCGCTGCTGCGCAAGTATGAATCGGCCACGCCGGTGGCGTGGTTCCTGGTGGGCATGGCGGCAATCACGGTCATCACGCTGTTGCTGACGCGCGAGCCCGCGCGGCAGGAATCGGCATGA > 4 HMPREF0005_04569 NA shikimate_transporter EFV84728.1 11 MMTTKTAPARSRRDYVTAGLASMMGTTIEWYDFFLYGTAAALIFNKIFFPSFDPLTGTLAAFATYSVGFFARPLGGVIFGHYGDRIGRKSMLLITLLLMGVPTILIGLIPSYEQIGYWAAVLLVLMRFLQGIAVGGEWGGAVLMAVEHAPQGKKGFFGSLPQAGVAPGLILSSLAMGAVAGLPEQDMLSWGWRLPFLASVVLLAVGWFIRVKVAESPDFEQMRDKGAKVEVPVAAVLRHHRRALWTVVGARLAEVTWFYTVVTFSLAYATGTLGIPRAVMLDATIWGAALALFTMPLFGMLGDRIGHKWVFMAGAVGILACAPLFFQLLATGQTGWIIVAVCLAVGLVYACLYGPEGTLFSSQFPAEVRYTGISLAVQVSGAIGGGLAPIVATWLLARAGGDPKYVVWYLSALGVVAVFSAWRMRGDAPAREAVGVPAGART beta_subgroup Achromobacter_xylosoxidans_C54 Achromobacter_xylosoxidans_C54 ACRC01000504 1951..3279 Earl,A.,_Ward,D.,_Feldgarden,M.,_Gevers,D.,_Sibley,C.D.,_Field,T.R.,_Grinwis,M.,_Eshaghurshan,C.S.,_Surette,M.,_Young,S.K.,_Zeng,Q.,_Gargeya,S.,_Fitzgerald,M.,_Haas,B.,_Abouelleil,A.,_Alvarado,L.,_Arachchi,H.M.,_Berlin,A.,_Brown,A.,_Chapman,S.B.,_Chen,Z.,_Dunbar,C.,_Freedman,E.,_Gearin,G.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Howarth,C.,_Larson,L.,_Lui,A.,_MacDonald,P.J.P.,_Mehta,T.,_Montmayeur,A.,_Murphy,C.,_Neiman,D.,_Pearson,M.,_Priest,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_White,J.,_Yandava,C.,_Nusbaum,C._and_Birren,B. NA 0:1329 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Source_DNA_provided_by_Christopher_D._Sibley,_Tyler_R._Field,Margot_Grinwis,_Christina_S._Eshaghurshan,_and_Michael_G._Surette.(Department_of_Microbiology_and_Infectious_Diseases,_University_ofCalgary,_Faculty_of_Medicine,_3330_Hospital_Drive_NW,_Calgary,Alberta_T2N_4N1).Bacteria_provided_by_Christopher_D._Sibley,_Tyler_R._Field,_MargotGrinwis,_Christina_S._Eshaghurshan,_and_Michael_G._Surette.(Department_of_Microbiology_and_Infectious_Diseases,_University_ofCalgary,_Faculty_of_Medicine,_3330_Hospital_Drive_NW,_Calgary,Alberta_T2N_4N1).Please_be_aware_that_the_annotation_is_done_automatically_withlittle_or_no_manual_curation.##Genome-Assembly-Data-START##Finishing_Goal_::_Noncontiguous_FinishedCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_v._2.1-PreRelease-4/28/2009Assembly_Name_::_Achr_xylo_C54_V2Genome_Coverage_::_16xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 11-JAN-2011 Achromobacter_xylosoxidans_C54_cont1.504,_whole_genome_shotgun_sequence. NA Alcaligenaceae_De_Ley_et_al._1986 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Achromobacter_xylosoxidans_E5U8K5_ALCXX.gb Achromobacter_Yabuuchi_and_Yano_1981_emend._Yabuuchi_et_al._1998 317404296 Unpublished NA ACRC01000504 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1329 NA genomic_DNA NA C54 NA Flavobacterium_sp._650 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 562971 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Alcaligenaceae,_Achromobacter The_Genome_Sequence_of_Achromobacter_xylosoxidans_strain_C54 NA ACRC01000504.1 ATGATGACGACCAAGACAGCGCCCGCGCGGTCGCGCCGGGACTACGTAACGGCCGGCCTGGCCAGCATGATGGGCACCACCATCGAGTGGTACGACTTTTTCCTGTACGGCACGGCCGCCGCGCTGATCTTCAACAAGATCTTCTTTCCGTCGTTCGATCCGCTGACCGGCACGCTGGCCGCGTTCGCCACCTATTCGGTGGGCTTTTTCGCGCGGCCGCTGGGCGGCGTGATCTTCGGCCACTACGGCGACAGGATCGGCCGCAAGTCCATGCTGCTGATCACCTTGCTGCTGATGGGCGTGCCCACCATCCTGATCGGCCTGATCCCGTCGTATGAGCAGATCGGTTACTGGGCCGCGGTGCTGCTGGTGCTGATGCGTTTTCTGCAGGGCATCGCGGTGGGCGGCGAGTGGGGCGGCGCCGTGCTGATGGCGGTCGAGCACGCGCCGCAGGGCAAGAAGGGCTTTTTCGGCAGCCTGCCGCAGGCCGGGGTGGCGCCGGGCCTGATCCTGTCGTCGCTGGCGATGGGCGCGGTGGCCGGGCTGCCGGAGCAGGACATGCTGTCGTGGGGCTGGCGCCTGCCGTTCCTGGCCAGCGTGGTGCTGCTGGCGGTGGGCTGGTTCATCCGCGTCAAGGTGGCCGAGTCGCCCGACTTCGAGCAGATGCGCGACAAGGGCGCCAAGGTCGAGGTGCCGGTGGCGGCCGTGCTGCGCCATCACCGGCGCGCGCTGTGGACGGTGGTGGGCGCGCGGCTGGCCGAGGTCACCTGGTTCTACACGGTGGTCACGTTTTCGCTGGCCTACGCCACCGGCACGCTGGGCATTCCCCGTGCGGTGATGCTGGACGCCACCATCTGGGGCGCGGCATTGGCGTTGTTCACCATGCCGCTGTTCGGCATGCTGGGCGACCGCATTGGCCACAAGTGGGTGTTCATGGCCGGCGCGGTCGGCATCCTGGCGTGCGCGCCGCTGTTCTTCCAGTTGCTGGCCACCGGCCAGACCGGCTGGATCATCGTCGCGGTATGCCTGGCGGTGGGATTGGTCTACGCTTGCCTGTACGGTCCCGAGGGCACGCTGTTCTCCAGCCAGTTTCCGGCCGAGGTGCGCTACACCGGCATCTCGCTGGCGGTGCAGGTGTCGGGGGCGATCGGCGGCGGCCTGGCGCCGATCGTCGCGACCTGGCTGCTGGCGCGCGCCGGCGGCGATCCGAAATACGTGGTGTGGTACCTGAGCGCGCTGGGCGTGGTGGCGGTGTTCAGCGCCTGGCGCATGCGCGGCGATGCGCCGGCGCGGGAAGCAGTGGGCGTGCCGGCCGGCGCCCGGACCTGA > 5 ASAC_0019 NA major_facilitator_transporter YP_003815459.1 11 MVLTRDQRLVLVSTTLDMFLEGVFVTLPSVSALLSSIPSWATPLVFSTIPVGTLIGNLALGRLTDLRGRKSTYMAMLGVYALGALLILAFNSLYAVLAGLLITQTAMGGEVPIVLSYIVESAPADIKERLVVLITNVGNVGAVVISAVALAFGGLSAASGRAAVGALVAGAIAIMAVTRSMVPESRPWLSLRPEERGRVVLGAEARLWLALLTLMAVSSVLTFGLLALSIGPEEFPSHALEIIMLYFAGEALGGLIAAAAMDRVGSRAFTLASFAGGFATSLAAIPALRAGLAPFMALLFVNGAFTETVWASRNVLESLSFPTTFRATGIALVRAAPYVLMLASFFATAGMGVVDFLWYATAMWALGLAASAAWMARGREVVGSPVAIRPEDLDRLRRRA Thermoprotei_Reysenbach_2002 Acidilobus_saccharovorans_345-15 Acidilobus_saccharovorans_345-15 NC_014374 22892..24094 Mardanov,A.V.,_Svetlitchnyi,V.A.,_Beletsky,A.V.,_Prokofeva,M.I.,_Bonch-Osmolovskaya,E.A.,_Ravin,N.V._and_Skryabin,K.G. NA 0:1203 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001742.COMPLETENESS:_full_length. NA 26-JAN-2012 Acidilobus_saccharovorans_345-15_chromosome,_complete_genome. NA Acidilobaceae_Prokofeva_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acidilobus_saccharovorans_D9PZE0_ACIS3.gb Acidolobus 302347802 Appl._Environ._Microbiol._76_(16),_5652-5657_(2010) NA NC_014374 NA NA Caldisphaerales not_Crenarchaeota_Cavalier-Smith_2002 20581186 1203 NA genomic_DNA NA 345-15 NA Acidilobus_saccharovorans_Prokofeva_et_al._2009 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 666510 Archaea,_Crenarchaeota,_Thermoprotei,_Acidilobales,_Acidilobaceae,_Acidilobus The_Genome_Sequence_of_the_Crenarchaeon_Acidilobus_saccharovorans_Supports_a_New_Order,_Acidilobales,_and_Suggests_an_Important_Ecological_Role_in_Terrestrial_Acidic_Hot_Springs NA NC_014374.1 ATGGTACTCACGAGGGACCAGAGGCTGGTGCTGGTATCAACCACGCTAGACATGTTCCTGGAGGGAGTCTTCGTCACCCTCCCATCTGTGTCGGCCCTGCTCTCGTCAATACCGTCGTGGGCCACCCCGCTGGTCTTCTCCACCATTCCCGTGGGCACCCTCATAGGCAACCTGGCCCTGGGCAGGCTCACCGACCTGAGGGGCAGGAAGTCCACTTACATGGCCATGCTCGGGGTCTACGCCCTGGGGGCCCTGCTGATACTTGCCTTCAACAGCCTCTACGCCGTCCTGGCGGGCCTTCTCATAACGCAGACGGCCATGGGGGGAGAGGTCCCCATAGTGCTGAGCTACATAGTCGAGAGCGCCCCGGCCGACATAAAGGAGAGGCTTGTCGTGCTCATAACTAACGTGGGCAACGTCGGCGCAGTTGTCATATCCGCGGTGGCCCTGGCCTTCGGCGGCCTCTCGGCTGCCTCCGGCAGGGCTGCCGTAGGGGCCCTGGTGGCCGGGGCCATAGCAATAATGGCTGTGACCCGCTCCATGGTGCCCGAGTCGAGGCCCTGGCTCTCCCTCAGGCCCGAGGAGAGGGGCAGGGTTGTCCTAGGGGCCGAGGCCAGGCTCTGGCTCGCCCTGCTAACACTCATGGCAGTTTCCTCGGTGCTCACCTTCGGCCTCCTGGCCCTCAGCATAGGACCCGAGGAGTTCCCATCACACGCCCTCGAGATTATAATGCTCTACTTCGCGGGCGAGGCCCTGGGCGGGCTCATAGCGGCAGCTGCAATGGACAGGGTGGGCTCAAGGGCCTTCACGCTGGCCAGCTTCGCGGGCGGCTTCGCCACGTCGCTGGCAGCCATACCTGCCCTCAGGGCCGGGCTAGCGCCATTCATGGCACTGCTGTTCGTTAACGGCGCCTTCACCGAGACCGTCTGGGCCTCGAGGAACGTCCTGGAGTCCCTGTCCTTCCCCACAACTTTCAGGGCCACGGGGATAGCCCTGGTCAGGGCGGCGCCCTACGTGCTGATGCTGGCGAGCTTCTTCGCCACGGCAGGCATGGGGGTCGTCGACTTCCTGTGGTACGCCACCGCCATGTGGGCCCTCGGCCTGGCGGCCTCTGCAGCCTGGATGGCCAGGGGCAGGGAGGTGGTGGGCTCGCCCGTGGCGATAAGGCCCGAGGACCTGGACAGGCTGAGGAGGAGGGCCTAG > 6 Acry_3608 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1 general_substrate_transporter YP_001220343.1 11 MTTSAALPPVENTVSEALNQVVFSPFHLRAIFAAGMGFFASAYDLFIIGTALTLIKGEWHLSPGSVALIGSISLAATFVGAFMFGRTADIFGRKSIYGLEALLMTAGALLSAFAPNVTILLIARVILGFGIGGDYPLSAVLMSEYSNTKSRGRMVSLVFSTQAAGLVVGPAIALTLLAAGIDHDIAWRIMLGLGALPAAMVIYIRRTLPESPRWLARVKGDGTRAARELASFSLGTATSAGRDKVVKQPFSRYLLVFLGTAGTWFVFDYAYYGNTISTPMIMQQIAPHADLLMSTAMSLIIFAAAAVPGYILAILTVDRIGHKRLQLIGFAGMGLMFLIIGLFPMLISTVGLFLIIYGLSYFFAEFGPNTTTFLLSSEVFPVNIRTTGHGASAGVAKVGAFIGAFIFPILITDFGLYGTLRITFLFSMVGLVLTAVCLREPAGLSLEAVSNETTDEVAMSPMMARASST alpha_subgroup Acidiphilium_cryptum_JF-5 Acidiphilium_cryptum_JF-5 NC_009471 24319..25728 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Sims,D.,_Brettin,T.,_Bruce,D.,_Han,C.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_Magnuson,T._and_Richardson,P. NA 0:1410 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000693.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000181Source_DNA_and_bacteria_available_from_Timothy_Magnuson(magntimo@isu.edu)Contacts:_Timothy_Magnuson_(magntimo@isu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 26-JUL-2008 Acidiphilium_cryptum_JF-5_plasmid_pACRY05,_complete_sequence. NA alpha-1_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acidiphilium_cryptum_A5FUB9_ACICJ.gb Acidiphilum 148244088 Unpublished NA NC_009471 NA NA Rhodospirillales_Pfennig_and_Truper_1971 purple_photosynthetic_bacteria_and_relatives NA 1410 NA genomic_DNA NA JF-5 NA Acidiphilum_cryptum NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 349163 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodospirillales,_Acetobacteraceae,_Acidiphilium Complete_sequence_of_plasmid5_pACRY05_of_Acidiphilium_cryptum_JF-5 NA NC_009471.1 ATGACAACATCAGCAGCACTTCCGCCCGTAGAAAATACCGTCTCCGAAGCGCTCAACCAGGTTGTATTTAGTCCGTTCCATTTGCGAGCCATTTTTGCGGCGGGAATGGGATTTTTTGCCTCTGCCTACGACCTGTTCATCATCGGCACGGCTCTGACCCTGATCAAGGGCGAATGGCATTTGTCGCCCGGATCGGTTGCGCTGATCGGCTCGATTTCGCTGGCCGCCACCTTTGTCGGCGCCTTCATGTTCGGGCGTACCGCGGATATTTTTGGTCGCAAGTCGATCTATGGCCTGGAAGCGCTCCTGATGACGGCGGGCGCTCTCCTCTCGGCGTTCGCACCCAATGTCACCATTCTTTTGATTGCGCGAGTGATCCTCGGATTCGGTATCGGTGGTGACTATCCGCTTTCCGCCGTTTTGATGAGCGAGTATTCCAACACGAAATCACGCGGCCGCATGGTCAGCCTCGTGTTTTCCACCCAGGCTGCCGGCCTGGTGGTTGGTCCGGCGATCGCGCTCACTCTGCTAGCAGCCGGCATCGATCACGACATCGCATGGCGCATCATGCTCGGCCTCGGCGCTCTACCGGCAGCAATGGTGATCTATATTCGACGCACCCTGCCAGAAAGCCCGCGATGGCTTGCCAGGGTGAAAGGGGACGGTACGCGCGCTGCGCGGGAACTCGCTTCGTTCAGCTTGGGAACTGCGACGTCCGCAGGGCGCGACAAGGTGGTGAAACAGCCATTCAGCCGCTATTTGCTCGTTTTTCTGGGAACGGCCGGCACGTGGTTCGTGTTCGACTATGCCTATTATGGCAACACGATTTCGACGCCCATGATCATGCAGCAGATCGCACCGCATGCAGACCTGCTGATGAGCACGGCAATGAGCCTGATTATCTTCGCGGCGGCGGCGGTGCCCGGTTACATCCTCGCGATCCTGACGGTTGATCGGATTGGCCATAAGCGACTGCAACTGATTGGTTTCGCGGGCATGGGATTGATGTTTCTGATCATCGGACTGTTTCCGATGCTGATTTCAACCGTTGGACTATTCCTGATTATCTATGGTCTGTCCTATTTTTTCGCCGAATTCGGTCCGAATACGACTACATTTTTGCTCTCCAGCGAGGTCTTTCCGGTCAACATACGGACCACCGGCCACGGCGCATCGGCGGGAGTAGCGAAAGTGGGTGCGTTCATCGGCGCATTTATCTTCCCGATCCTGATCACAGATTTTGGGCTTTATGGCACGTTGCGCATCACTTTTCTCTTCTCGATGGTAGGACTGGTGTTGACGGCCGTATGCCTGCGCGAGCCGGCCGGTCTCAGTCTGGAGGCTGTGAGTAATGAGACCACGGACGAGGTCGCCATGTCACCGATGATGGCGAGGGCATCATCGACGTGA > 7 NA NA major_facilitator_family_transporter ACI62966.1 11 MSAVFTTLDEQSITRRHRRVLWASGLGIFLDGYDLSIMAIALIVLKDQWHPSSAALGLLGTAALVGALVGGLLGGPIADRFGRKTIYLIDIAAFFFAALLSGFAWDIASLVAFRFLLGLGVGADYPLSSTYMAEFMPKDRRGAVMTWIFGLWMGGAVVSSLVGLALLHTGPDAWRWMLASGALPAILVLWMRRNLPESPRWYLRRGRVADAERVVAWLAPQLSAAERRAALEETAAAMEGARRHSWLDLFGKRYLKLTLYACIPWFMMDVMGYALAIFLPLMLLHLGLKTNEQAVIGNTLFSLAFVIGWIPLALLIDRIGRRRAQIIGFLGDALGLGLVGVLLVALGEPPFWAVATGLLLFQISNSFGPGTTTWIIPTELYPTELRASGHGFATAVSRLGAATSVFLLPTIQATLGEAGLLFLLAGAGGVGVVTTLWLGNEMARESLPESLARKAA gamma_subgroup Acidithiobacillus_caldus Acidithiobacillus_caldus EU747029 NA Osorio,H.M.,_Martinez,V.,_Nieto,P.A.,_Holmes,D.S._and_Quatrini,R. NA 0:1371 NA NA 30-NOV-2008 Acidithiobacillus_caldus_major_facilitator_family_transporter_gene,_complete_cds. NA Acidithiobacillaceae_Garrity_et_al._2005 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acidithiobacillus_caldus_B7SV04_9GAMM.gb Acidithiobacillus_Kelly_and_Wood_2000 209574055 Unpublished NA EU747029 NA NA Acidithiobacillales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives NA 1371 NA genomic_DNA NA NA NA Thiobacillus_caldus_Hallberg_and_Lindstrom_1995 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 33059 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Acidithiobacillales,_Acidithiobacillaceae,_Acidithiobacillus Microbial_iron_management_mechanisms_in_extremely_acidic_environments:_comparative_genomics_evidence_for_diversity_and_versatility NA EU747029.1 ATGAGTGCCGTATTCACCACCCTCGATGAGCAGTCCATCACCCGCCGGCACCGCCGCGTCCTTTGGGCCTCGGGCCTCGGGATCTTCCTCGATGGCTACGATCTCAGCATCATGGCCATCGCCCTCATCGTCCTCAAGGATCAGTGGCACCCCAGTTCTGCCGCCCTGGGCCTTTTGGGGACTGCGGCCCTGGTGGGTGCTCTGGTGGGGGGACTTCTGGGCGGCCCCATCGCCGATCGCTTTGGCCGCAAGACCATCTACCTCATCGATATCGCGGCTTTTTTCTTTGCGGCACTGCTCTCGGGTTTCGCCTGGGATATCGCTTCCCTGGTGGCCTTCCGCTTTTTACTGGGCCTTGGGGTGGGCGCCGATTATCCCCTGAGCTCCACCTATATGGCGGAGTTCATGCCCAAGGACCGCCGTGGGGCGGTGATGACCTGGATCTTTGGTTTATGGATGGGCGGAGCCGTGGTCTCGAGCCTCGTCGGCCTTGCCCTCCTGCACACGGGACCCGACGCCTGGCGCTGGATGTTGGCCTCGGGCGCGCTGCCCGCCATTCTGGTCTTGTGGATGCGGCGCAATCTGCCGGAATCGCCGCGCTGGTATCTGCGTCGCGGACGGGTAGCGGACGCCGAGCGGGTCGTGGCCTGGCTCGCTCCGCAACTCTCGGCAGCCGAGCGGCGCGCAGCTCTGGAGGAGACGGCCGCTGCCATGGAGGGGGCACGGCGCCACAGCTGGCTGGACCTCTTCGGTAAACGTTACCTCAAGCTGACCCTGTATGCCTGCATTCCCTGGTTCATGATGGACGTCATGGGGTACGCCTTAGCCATTTTCCTCCCCCTCATGCTCCTGCATCTGGGTCTCAAGACCAACGAACAGGCGGTGATCGGCAATACCCTGTTCAGTCTTGCCTTTGTCATCGGCTGGATTCCCTTGGCCCTGCTCATCGACCGGATCGGTCGCCGCCGCGCCCAGATCATCGGTTTTTTGGGTGACGCGCTGGGTCTTGGGCTCGTGGGGGTACTGCTGGTAGCCTTGGGTGAACCGCCTTTCTGGGCCGTGGCCACGGGTCTCTTGCTCTTTCAGATCAGCAATAGCTTTGGCCCCGGAACCACCACCTGGATCATCCCGACGGAGCTCTATCCGACGGAGCTGCGCGCCAGCGGCCACGGTTTCGCCACCGCCGTCAGCCGACTGGGCGCAGCCACCAGTGTGTTCCTGCTGCCCACCATCCAGGCGACCCTGGGCGAAGCGGGCTTGCTCTTCTTGCTGGCCGGCGCTGGCGGGGTTGGCGTCGTGACCACCCTCTGGCTCGGTAACGAGATGGCGCGCGAATCCCTGCCCGAAAGCCTGGCGCGCAAGGCGGCCTGA > 8 AFE_2312 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 sugar_transporter_family_protein YP_002426707.1 11 MRETETRQPRKDWRFILIAIVAGLGGLLFGYDTGVVAGVLLFLNHVFHFDASMKGLFVAIALAAAAVGAAFAGALADAFGRRAVLIVAAVLFSAGAILASVAWTIPVLFLGRVMVGAAIGVSSMITPLYLSEITAAHWRGAIVTINQFYITVGIFLSYVVDYMLSGVTDGWRWMLAIGAIPGFILLGGMMILPESPRWLAGRDLIEKATAGLRFLRGRQDVSEELGDLRRDVVEGSRRAAPWSLLLERKVRKPLIIGIGLAVFQQITGINVVIYFAPTIFQDAGLSSASVSILATVGIGAVNVIMTSVAMRLLDTAGRRKILLFGLCGMLVSLIVIGIGFMIQLHGALAYIIVGMVAIFVAFFAIGLGPIFWLMISEIFPLAIRGRAMSIATVANWVSNMVISGIFLDLLLMIGRGPTFIFYASMTVLAILFTLWIVPETKGKTLEQIEDSL gamma_subgroup Acidithiobacillus_ferrooxidans_ATCC_23270 Acidithiobacillus_ferrooxidans_ATCC_23270 NC_011761 2060969..2062327 Valdes,J.,_Pedroso,I.,_Quatrini,R.,_Dodson,R.J.,_Tettelin,H.,_Blake,R._II,_Eisen,J.A._and_Holmes,D.S. NA 0:1359 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001219.COMPLETENESS:_full_length. NA 20-JAN-2012 Acidithiobacillus_ferrooxidans_ATCC_23270,_complete_genome. NA Acidithiobacillaceae_Garrity_et_al._2005 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acidithiobacillus_ferrooxidans_B7J682_ACIF2.gb Acidithiobacillus_Kelly_and_Wood_2000 218665024 BMC_Genomics_9,_597_(2008) NA NC_011761 NA NA Acidithiobacillales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives 19077236 1359 NA genomic_DNA NA ATCC_23270 NA Tiobacillus_ferroxidant NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 243159 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Acidithiobacillales,_Acidithiobacillaceae,_Acidithiobacillus Acidithiobacillus_ferrooxidans_metabolism:_from_genome_sequence_to_industrial_applications NA NC_011761.1 TTATAGACTATCCTCGATCTGCTCCAGGGTCTTACCCTTTGTTTCTGGTACAATCCATAGGGTGAACAGGATCGCCAAAACAGTCATTGACGCATAAAATATGAAAGTAGGGCCGCGTCCAATCATCAATAACAAGTCTAGGAATATACCGGAAATCACCATGTTTGAGACCCAATTGGCAACGGTTGCAATACTCATGGCCCTACCTCGGATAGCGAGCGGAAAAATCTCAGAGATCATCAGCCAGAAAATAGGTCCAAGGCCAATAGCAAAAAAAGCGACAAAGATAGCAACCATGCCCACGATGATATAAGCCAGTGCACCGTGAAGCTGTATCATGAATCCAATACCAATAACAATAAGACTGACCAGCATACCACAGAGGCCAAAAAGCAGAATTTTGCGGCGACCGGCGGTATCCAGTAACCGCATTGCGACGCTTGTCATGATCACATTGACGGCACCAATACCTACGGTGGCGAGAATGGAAACCGAAGCCGAGGATAAACCGGCATCCTGAAAAATGGTCGGTGCAAAATAAATAACCACATTGATGCCCGTTATTTGCTGAAAAACTGCCAGACCGATGCCAATAATCAGTGGCTTACGAACCTTACGTTCCAGAAGTAACGACCAGGGTGCTGCCCGACGGCTGCCCTCAACAACATCGCGACGTAGATCTCCAAGCTCTTCGGAAACATCCTGACGTCCCCGCAAAAAACGAAGTCCTGCCGTCGCCTTTTCTATAAGATCACGCCCCGCCAACCATCGCGGACTTTCCGGCAGGATCATCATCCCCCCAAGCAAGATGAAGCCGGGAATGGCACCAATTGCCAGCATCCATCGCCAACCATCGGTGACACCAGAGAGCATATAATCAACTACATAGGATAGAAAAATACCCACGGTAATATAAAATTGATTGATGGTTACAATGGCACCGCGCCAATGCGCCGCTGTGATTTCTGATAGGTACAGAGGGGTAATCATGGAAGACACCCCAATGGCGGCTCCTACCATAACCCGGCCCAGGAAGAGAACGGGTATGGTCCAAGCCACTGAGGCCAAAATCGCACCTGCTGAGAAGAGAACGGCGGCAACGATCAGTACGGCGCGACGTCCGAAAGCATCTGCAAGTGCTCCGGCAAATGCTGCGCCCACGGCGGCAGCGGCCAGTGCGATTGCAACAAATAGCCCCTTCATGCTTGCATCAAAGTGAAAAACATGATTTAAAAACAAGAGAACACCAGCTACGACACCTGTGTCGTAGCCAAATAGCAATCCACCGAGCCCAGCGACAATTGCAATCAAAATAAATCGCCAGTCCTTCCTGGGTTGGCGTGTCTCTGTCTCGCGCAT > 9 AciX8DRAFT_3194 PFAM:_General_substrate_transporter;_KEGG:_ote:Oter_1004_general_substrate_transporter General_substrate_transporter EFI55507.1 11 MPYVAPTSTFHAPDSNANRGNEAYNRFLLIVAGLGGLLYGVDVGIIGGALPYLEATSHLNASQLSIIVAAVLLGSVISTLFAGLLADWLGRKPLMVLSGITFVLSIPMIALSHGYGPLFFGRLLQGVSGGLIGVVVPLYLAECLTASKRGQGTGIFQWLLTLGIVSAAFIGIYYSYRVEAVAKVASAATVLTFKDQAWRRIFWVSLPPGVLFVIGSLFVGESPRWLFRLGKKDRAYAALLRSRSPQQAEIELKEMEEIALAVKIQPSTGKEIKDSLLRRKYLFPFLLTCVILFCNTATGINSIIGYNTSILLQSGLSDIRAHWGYALFTCVNFLMTIVGMTLVDKKGRKFLFILGTSGIIVSLLCVGGLFLKTEKLNIDCRNTIQSLVGADQTLNLPFNEAEAQKLLTASGYTGNEVQSNRASMTVIYSYGDFTGATDFVRSDDPGVAPIQITRAGCVPTNKIEAFFKNPFANLDAARTAPLKINRAYIGGVPNEGHGWLVALGLYAFMAFYALGPGVCVWLALSELMPTRIRSNGMSFALVINQMVSTTLAGIFLPVVSKYGYSSMFFLFTGFTVVYLLTVTFFLPETKGKTLEEIEAYFEAPRKA Acidobacteriia_(sic)_Cavalier-Smith_2002_in_Thrash_and_Coates_2011 Granulicella_mallensis_MP5ACTX8 Granulicella_mallensis_MP5ACTX8 ADVX01000007 162969..164792 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Land,M.L.,_Hauser,L.,_Chang,Y.-J.,_Jeffries,C.,_Rawat,S.R.,_Mannisto,M.,_Haggblom,M.M._and_Woyke,T.J. NA 0:1824 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4088692Source_DNA_and_Organism_available_from_Max_M._Haggblom(haggblom@aesop.rutgers.edu)Contacts:_Max_M._Haggblom_(haggblom@aesop.rutgers.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)This_WGS_projecthas_been_superceded_by_the_complete_genome_in_(non-WGS)_GenBankrecord_CP003130.##Metadata-START##Organism_Display_Name_::_Acidobacterium_sp._MP5ACTX8GOLD_Stamp_ID_::_Gi05573Funding_Program_::_DOE-CSP_2010##Metadata-END## NA 18-JUN-2010 Granulicella_mallensis_MP5ACTX8_ctg00031,_whole_genome_shotgun_sequence. NA Holophaga_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acidobacterium_sp_D6UVB4_9BACT.gb Granulicella_Pankratov_and_Dedysh_2010 298599204 Unpublished NA ADVX01000007 NA NA Acidobacteriales_Cavalier-Smith_2002 Acidobacterium_group NA 1824 NA genomic_DNA NA MP5ACTX8 NA Granulicella_mallensis NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes Fibrobacteres/Acidobacteria_group 682795 Bacteria,_Acidobacteria,_Acidobacteriales,_Acidobacteriaceae,_Granulicella The_draft_genome_of_Acidobacterium_sp._MP5ACTX8 NA ADVX01000007.1 TTACGCTTTTCGTGGTGCTTCGAAGTAAGCCTCAATCTCTTCCAGCGTCTTGCCTTTGGTCTCCGGAAGGAAGAAGGTTACGGTCAGCAAATAGACCACCGTAAATCCGGTGAACAGGAAGAACATCGAGGAGTAACCGTACTTGCTGACGACAGGAAGGAAGATTCCGGCAAGCGTCGTCGAAACCATCTGATTGATGACGAGGGCGAAGCTCATGCCATTGGAGCGAATGCGTGTGGGCATCAACTCCGACAGCGCAAGCCACACGCAGACGCCAGGACCGAGCGCATAGAAAGCCATGAACGCATAGAGACCCAGCGCGACCAGCCAGCCATGTCCCTCGTTGGGAACACCGCCGATGTAGGCTCGATTGATCTTCAGCGGTGCGGTACGAGCGGCATCCAGATTGGCAAACGGGTTCTTGAAGAAGGCTTCGATCTTGTTGGTCGGCACGCAGCCCGCGCGCGTGATCTGAATGGGCGCTACTCCCGGATCATCCGAGCGCACAAAGTCGGTCGCGCCGGTGAAGTCGCCATAGGAGTAGATGACGGTCATGGAGGCGCGATTGCTTTGGACCTCGTTGCCGGTGTAGCCGCTGGCCGTCAGAAGCTTTTGCGCCTCTGCTTCGTTGAAGGGCAAATTAAGCGTCTGATCGGCGCCAACCAGCGATTGAATCGTGTTGCGGCAATCGATGTTCAGCTTTTCTGTCTTCAGGAACAATCCACCAACGCAGAGCAGCGACACGATAATTCCGGAGGTCCCGAGGATGAAGAGAAACTTTCGTCCCTTCTTGTCCACCAGGGTCATGCCGACGATCGTCATCAGAAAGTTCACGCAGGTAAAGAGGGCATAGCCCCAGTGCGCGCGAATGTCGGAGAGGCCGCTCTGCAGCAGGATGCTGGTGTTATAGCCGATGATCGAATTGATTCCGGTGGCCGTATTGCAGAAAAGGATGACGCAGGTCAGCAGGAAGGGGAACAGATACTTCCTGCGCAGAAGAGAGTCCTTGATCTCTTTTCCAGTGGAAGGCTGAATCTTGACGGCGAGCGCAATCTCTTCCATCTCCTTCAACTCGATCTCTGCCTGCTGGGGTGAGCGGGAGCGAAGCAACGCGGCATAAGCGCGATCTTTTTTGCCGAGCCGGAAGAGCCAGCGTGGAGACTCGCCTACGAACAGGCTGCCGATGACAAAGAGAACTCCGGGAGGCAGAGAGACCCAGAAGATGCGGCGCCATGCCTGGTCTTTGAAGGTCAGAACAGTGGCTGCACTGGCCACTTTGGCGACGGCCTCGACGCGATAGCTGTAGTAGATCCCGATAAAGGCGGCTGAGACGATGCCCAGGGTGAGCAGCCATTGGAAGATGCCCGTGCCCTGGCCGCGCTTCGACGCTGTGAGGCATTCGGCAAGATAGAGCGGAACGACGACACCGATGAGTCCACCACTGACGCCCTGCAGGAGCCGTCCGAAGAAGAGAGGCCCATATCCATGGGAGAGGGCGATCATCGGGATGCTCAACACGAAGGTGATTCCGCTCAGGACCATGAGCGGTTTGCGTCCCAGCCAGTCGGCGAGCAGGCCCGCGAACAGCGTCGAGATCACGCTTCCGAGTAGTACGGCTGCAACGATAATGGAAAGCTGGCTGGCGTTCAGATGGGAGGTAGCTTCGAGATAGGGCAGGGCGCCGCCAATGATGCCTACGTCAACCCCATAGAGCAGTCCACCCAGGCCTGCGACGATCAGCAGGAAGCGGTTGTAGGCTTCGTTACCACGGTTGGCGTTGCTATCGGGAGCGTGGAACGTGGATGTGGGAGCTACATAGGGCAT > 10 ABAYE2380 Evidence_3_:_Function_proposed_based_on_presence_of_conserved_amino_acid_motif,_structural_feature_or_limited_homology;_Product_type_pt_:_transporter MFS_family_transporter YP_001714212.1 11 MTTTLKKVVAASMVGSVAEWYEFFLYGTASALVFGELFFQQTGNAIDGILAAFALYAVGFLARPLGGLVFGHYGDKIGRKKLLQISLIIVGITTFLMGCIPTFHQIGYWAPTLLVILRLIQGFAFGGEWGGAVILVSEHSPDDRRGYWASWPQTGVPLGNLVATLVLLLLSKNLSPEQFLDWGWRCAFWFSAVVVLIGLWIRKNVDDAEVFKEAQAKQQLLEKQQLGIIEVLKYHKKSVIAGIGARFAENILYYMVVTFSISYLKLVVHKDTSQILLLMFGAHLIHFFIIPFMGHLSDIFGRKPIYLIGAVLTAFWGFVGFPLMDTGNDWLIMLAIVLGLFIESMTYSPYSALMAELFPTHIRYTALSFCYQVAPIMAGSLAPLIALTLLKEFNSSIPISLYLVAASLISIVSILLVKETKGRSLAFKD gamma_subgroup Acinetobacter_baumannii_AYE Acinetobacter_baumannii_AYE NC_010410 2425002..2426291 Vallenet,D.,_Nordmann,P.,_Barbe,V.,_Poirel,L.,_Mangenot,S.,_Bataille,E.,_Dossat,C.,_Gas,S.,_Kreimeyer,A.,_Lenoble,P.,_Oztas,S.,_Poulain,J.,_Segurens,B.,_Robert,C.,_Abergel,C.,_Claverie,J.M.,_Raoult,D.,_Medigue,C.,_Weissenbach,J._and_Cruveiller,S. NA 0:1290 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU459141.Annotation_data_relative_to_BLAST_similarities,_COG_assignations,enzymatic_function_prediction_(PRIAM_software),_TMHMM_and_SignalPpredictions,_and_synteny_results_(Syntonizer_software)_areavailable_in_BaumannoScope_database_via_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage/baumannoscope.COMPLETENESS:_full_length. NA 27-JAN-2012 Acinetobacter_baumannii_AYE_chromosome,_complete_genome. NA Moraxellaceae_Rossau_et_al._1991 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acinetobacter_baumannii_B0VB39_ACIBY.gb Acinetobacter_Brisou_and_Prevot_1954 169794206 PLoS_ONE_3_(3),_E1805_(2008) NA NC_010410 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18350144 1290 NA genomic_DNA NA AYE NA Bacterium_anitratum NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 509173 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Moraxellaceae,_Acinetobacter,_Acinetobacter_calcoaceticus/baumannii_complex Comparative_analysis_of_Acinetobacters:_three_genomes_for_three_lifestyles NA NC_010410.1 ATGACGACAACACTAAAAAAGGTTGTAGCAGCCTCCATGGTTGGCTCCGTAGCAGAATGGTATGAATTTTTCCTATATGGAACTGCTTCTGCCCTTGTCTTTGGCGAACTTTTCTTTCAACAAACGGGCAATGCTATAGATGGTATTTTGGCAGCATTTGCCCTCTATGCCGTTGGCTTTTTAGCAAGACCTCTCGGTGGCCTCGTGTTTGGTCACTACGGCGATAAAATTGGACGCAAGAAATTATTGCAAATTAGCCTGATTATTGTCGGTATCACTACTTTTTTAATGGGCTGTATTCCGACCTTCCATCAAATTGGCTATTGGGCTCCTACACTCCTAGTGATACTGCGTTTAATTCAAGGCTTTGCTTTTGGTGGTGAATGGGGCGGCGCAGTTATTTTAGTTTCAGAGCACAGTCCAGATGATCGCAGAGGTTATTGGGCAAGCTGGCCACAAACTGGCGTACCGCTCGGAAATTTAGTAGCCACACTGGTTTTATTATTACTTTCAAAAAACCTCTCACCCGAACAATTCCTAGATTGGGGGTGGCGCTGTGCATTCTGGTTCTCAGCAGTCGTGGTACTGATTGGTTTATGGATTCGAAAAAATGTAGACGATGCCGAAGTGTTTAAAGAAGCACAGGCCAAACAACAGCTTCTTGAAAAGCAACAACTCGGGATTATTGAGGTTTTAAAATATCATAAGAAATCTGTTATTGCGGGTATCGGTGCCAGATTTGCAGAAAATATTTTGTACTATATGGTGGTTACTTTTTCGATCAGTTATTTAAAGTTAGTCGTCCATAAAGATACTTCGCAGATCTTACTGCTCATGTTCGGCGCTCATCTGATCCATTTCTTTATTATTCCTTTTATGGGGCATTTAAGCGATATATTTGGCCGTAAACCTATTTACCTTATTGGGGCTGTACTTACTGCTTTTTGGGGTTTTGTCGGCTTTCCTTTAATGGATACAGGCAATGACTGGCTCATTATGTTAGCCATTGTGCTTGGTTTATTTATTGAGTCCATGACCTACTCGCCTTACTCTGCGTTAATGGCTGAGTTATTTCCAACTCACATCCGCTATACGGCGCTTTCATTTTGTTATCAAGTCGCACCCATTATGGCAGGTTCGCTTGCTCCATTAATTGCCCTAACATTACTCAAAGAATTTAATAGTTCGATTCCGATTTCTTTATATTTGGTTGCCGCAAGTCTAATCTCTATTGTCTCGATTTTGCTGGTGAAAGAAACCAAAGGCCGATCTCTAGCTTTTAAAGATTAA > 11 ABAYE1923 Evidence_2b_:_Function_of_strongly_homologous_gene;_Product_type_t_:_transporter major_facilitator_superfamily_alpha-ketoglutarate_permease YP_001713793.1 11 MTYTQEEKRSRIRGIVGAASGNLVEWFDFYIYAVFAAYFTQALTAPDMDSTTKSIYVWGVFAASFFMRPIGSWLFGRIADRHGRKKSMIISICLMALSSFLFAALPTYDQVGLFAPFLLLLVRLLQGLSVGGEYGAVATYMSELGLKGQRGFYSSFQYVTLSGGQLLASLLGVILLTFLSEQQLHDGGWRIPFVIGGIAAILSLLARSRLEETLSHQDSERKESGSLRELFKKHWKTFLLVVGYTSAGSLTFYVETVYSKTYLTNLGMDGKTVGYIMTFALFVYMCAQPVFGAISDRIGRRSSMLAFSLLSAIFIYPVMVIGMRAYIDSPIIITLLLIFMMMLLSFYTSISGLVKAEMFPPHVRALGVGFSYAVGNALFGGSAPSVALQFKAAGIENTFFIYVIVMLIICFLCSLALPKKPDYLEHDH gamma_subgroup Acinetobacter_baumannii_AYE Acinetobacter_baumannii_AYE NC_010410 1979398..1980684 Vallenet,D.,_Nordmann,P.,_Barbe,V.,_Poirel,L.,_Mangenot,S.,_Bataille,E.,_Dossat,C.,_Gas,S.,_Kreimeyer,A.,_Lenoble,P.,_Oztas,S.,_Poulain,J.,_Segurens,B.,_Robert,C.,_Abergel,C.,_Claverie,J.M.,_Raoult,D.,_Medigue,C.,_Weissenbach,J._and_Cruveiller,S. NA 0:1287 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU459141.Annotation_data_relative_to_BLAST_similarities,_COG_assignations,enzymatic_function_prediction_(PRIAM_software),_TMHMM_and_SignalPpredictions,_and_synteny_results_(Syntonizer_software)_areavailable_in_BaumannoScope_database_via_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage/baumannoscope.COMPLETENESS:_full_length. NA 27-JAN-2012 Acinetobacter_baumannii_AYE_chromosome,_complete_genome. NA Moraxellaceae_Rossau_et_al._1991 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acinetobacter_baumannii_B0VE16_ACIBY.gb Acinetobacter_Brisou_and_Prevot_1954 169794206 PLoS_ONE_3_(3),_E1805_(2008) NA NC_010410 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18350144 1287 NA genomic_DNA NA AYE NA Bacterium_anitratum NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 509173 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Moraxellaceae,_Acinetobacter,_Acinetobacter_calcoaceticus/baumannii_complex Comparative_analysis_of_Acinetobacters:_three_genomes_for_three_lifestyles NA NC_010410.1 ATGACATATACTCAGGAAGAAAAACGTAGCAGGATACGTGGGATTGTAGGCGCAGCCTCTGGTAATTTAGTCGAATGGTTTGATTTTTATATTTATGCAGTATTTGCTGCTTACTTTACTCAAGCTTTAACCGCGCCAGATATGGATAGCACAACCAAGTCTATTTATGTTTGGGGGGTGTTTGCCGCAAGCTTCTTTATGCGTCCGATTGGAAGCTGGCTATTTGGTCGTATTGCAGATCGACATGGCCGAAAGAAGTCGATGATCATATCAATCTGTTTGATGGCTTTAAGCTCCTTTTTATTTGCAGCTTTGCCTACTTATGATCAAGTCGGTTTATTTGCCCCTTTTCTGTTACTCCTTGTTCGTTTACTTCAAGGCTTATCAGTGGGTGGTGAATATGGCGCCGTTGCCACTTATATGAGTGAATTAGGCTTAAAAGGTCAGCGTGGTTTTTACTCATCTTTCCAATATGTCACCCTCTCTGGTGGTCAATTGCTTGCAAGCTTACTGGGCGTTATTTTGTTGACGTTCTTAAGTGAACAACAATTACATGATGGCGGTTGGCGTATTCCATTTGTTATTGGTGGTATCGCAGCAATCTTATCTTTGCTTGCACGTAGTCGTTTAGAAGAAACACTTTCTCATCAAGATAGCGAACGAAAAGAGTCTGGTAGCTTAAGAGAACTCTTTAAAAAGCACTGGAAAACCTTTTTATTGGTGGTTGGATACACTTCTGCTGGTTCATTAACATTTTATGTAGAGACTGTTTATTCAAAAACCTATTTAACCAACTTAGGGATGGATGGAAAAACCGTTGGTTATATCATGACCTTTGCCCTATTTGTCTATATGTGTGCTCAACCTGTATTTGGTGCAATTTCAGACCGTATTGGGCGACGCTCTTCAATGTTGGCATTTAGCTTATTGTCCGCCATTTTTATTTATCCCGTCATGGTGATCGGGATGCGTGCCTATATAGATTCTCCGATCATCATCACCTTGCTACTCATCTTTATGATGATGTTACTCAGCTTCTATACTTCTATTAGTGGTTTGGTAAAAGCTGAAATGTTCCCACCTCATGTGCGAGCTTTAGGTGTAGGTTTCTCTTATGCAGTAGGTAATGCACTGTTTGGTGGTTCTGCGCCTTCGGTTGCCTTACAGTTCAAAGCTGCCGGAATTGAAAATACCTTCTTTATATATGTGATTGTCATGCTGATTATCTGTTTCTTGTGTAGCCTTGCGCTTCCGAAAAAACCAGATTATTTAGAACATGATCATTAA > 12 ABBFA_003327 GEPR_COG0477_Permeases_of_the_major_facilitator_superfamily Major_Facilitator_Superfamily_protein YP_002327203.1 11 MDLVSRIQNLPIGKFHYTLLWVVGLGWMFDAMDTGIIAFIMTTLVKDWSLTPAESGWIVSIGFVGMAIGAVCSGALADRFGRKTVFAMTMAIYSIATALCAFAPDLKWLLIFRFIVGLGLGGQLPVAVTLVSEYVPAHVRGRFIVLLESFWGLGWLVAALISYFIIPKFGWHIAFLIGGLPLIYILVIWKKVPESIPYLINRGRIEEAHALVQKLEAEACVQIVHHIEVMPVAMRQKVSFKQLWSGQFARRSLMLWLIWFGIVYSYYGIFTWLPSLLVKQGYDIVKSFEYVLLMILAQLPGYLAAAWFVERLGRKITLAAFIGFCALSAYFFGQADSVNSIMFWGCLMSFFNLGAWGVLYTYTPEQYPANIRAFGSGWASAMGRIGGIVAPMVVTHMMVAKNGFNHVFMMFTVVLLAVALVILILGEETQGKRLESIGL gamma_subgroup Acinetobacter_baumannii_AB307-0294 Acinetobacter_baumannii_AB307-0294 NC_011595 3539624..3540943 Adams,M.D.,_Goglin,K.,_molyneaux,N.,_Hujer,K.M.,_Lavender,H.,_Jamison,J.J.,_MacDonald,I.J.,_Martin,K.M.,_Russo,T.,_Campagnari,A.A.,_Hujer,A.M.,_Bonomo,R.A._and_Gill,S.R. NA 0:1320 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001172.COMPLETENESS:_full_length. NA 01-JUN-2011 Acinetobacter_baumannii_AB307-0294,_complete_genome. NA Moraxellaceae_Rossau_et_al._1991 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acinetobacter_baumannii_B7H1S2_ACIB3.gb Acinetobacter_Brisou_and_Prevot_1954 215481761 J._Bacteriol._190_(24),_8053-8064_(2008) NA NC_011595 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18931120 1320 NA genomic_DNA NA AB307-0294 NA Bacterium_anitratum NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 557600 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Moraxellaceae,_Acinetobacter,_Acinetobacter_calcoaceticus/baumannii_complex Comparative_genome_sequence_analysis_of_multidrug-resistant_Acinetobacter_baumannii NA NC_011595.1 CTATAGCCCAATCGACTCTAGTCTTTTACCTTGAGTCTCTTCACCTAATATCAAAATCACTAAAGCTACGGCAAGTAAAACCACAGTAAACATCATAAAAACGTGATTAAAGCCGTTTTTAGCAACCATCATATGTGTCACGACCATTGGTGCGACAATTCCACCGATACGCCCCATTGCCGATGCCCAGCCTGACCCGAAAGCCCGAATATTGGCCGGATATTGTTCTGGTGTATAGGTATATAACACTCCCCAGGCACCCAAATTAAAGAATGACATGAGACAGCCCCAGAACATAATGCTATTTACACTGTCGGCTTGTCCAAAGAAATATGCCGATAAAGCACAAAAACCGATAAATGCGGCAAGTGTAATTTTTCGACCTAAACGCTCGACAAACCAAGCAGCCGCCAAGTAGCCCGGTAACTGCGCCAAAATCATAAGCAATACATATTCAAATGATTTTACAATGTCATAGCCTTGTTTCACCAATAAACTTGGCAACCACGTAAAGATGCCGTAATAGGAATACACAATGCCAAACCAGATTAGCCAGAGCATTAAACTTCTACGAGCAAATTGACCACTCCAGAGCTGTTTAAATGAAACTTTTTGTCGCATCGCCACAGGCATGACTTCAATATGGTGAACAATTTGCACACATGCTTCGGCTTCTAGTTTTTGTACCAGTGCATGCGCTTCTTCAATACGACCACGGTTAATCAAATACGGTATCGACTCAGGAACTTTTTTCCAAATCACTAAAATATAAATAAGTGGAAGACCGCCTATAAGGAAGGCAATATGCCATCCAAATTTAGGAATAATAAAATAAGAAATGAGCGCAGCAACCAACCAGCCTAATCCCCAAAAACTTTCAAGCAGAACGATAAATCTTCCACGAACATGAGCAGGCACATATTCACTGACCAGCGTGACTGCTACAGGTAATTGACCACCTAGCCCCAACCCAACAATAAACCGAAAAATTAATAGCCACTTTAGATCAGGGGCAAAAGCACATAACGCAGTCGCAATACTATAAATTGCCATTGTCATCGCAAAGACAGTTTTACGGCCAAAACGATCTGCCAAGGCACCAGAACAAACTGCGCCTATAGCCATGCCTACAAAGCCAATACTGACAATCCAACCGCTTTCAGCAGGTGTTAATGACCAGTCTTTAACAAGGGTTGTCATAATAAAAGCGATAATGCCGGTATCCATCGCATCAAACATCCAACCTAAACCCACTACCCATAAAAGCGTGTAGTGAAATTTGCCAATTGGAAGATTTTGTATACGTGAAACCAGATCCAT > 13 AB57_0231 NA major_facilitator_superfamily_protein YP_002317641.1 11 MDLVSRIQNLPIGKFHYTLLWVVGLGWMFDAMDTGIIAFIMTTLVKDWSLTPAESGWIVSIGFVGMAIGAVCSGALADRFGRKTVFAMTMAIYSIATALCAFAPDLKWLLIFRFIVGLGLGGQLPVAVTLVSEYVPAHVRGRFIVLLESFWGLGWLVAALISYFIIPKFGWHIAFLIGGLPLIYILVIWKKVPESIPYLINRGRIEEAHALVQKLEAEACVQIVHHIEVVPVAMRQKVSFKQLWSGQFARRSLMLWLIWFGIVYSYYGIFTWLPSLLVKQGYDIVKSFEYVLLMILAQLPGYLAAAWFVERLGRKITLAAFIGFCALSAYFFGQADSVNSIMFWGCLMSFFNLGAWGVLYTYTPEQYPANIRAFGSGWASAMGRIGGIVAPMVVTHMMVAKNGFNHVFMMFTVVLLAVALVILILGEETQGKRLESIGL gamma_subgroup Acinetobacter_baumannii_AB0057 Acinetobacter_baumannii_AB0057 NC_011586 249228..250547 NA NA 0:1320 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001182.AB0057_bacterial_cultures_are_available_from_Dr._Robert_Bonomo_bye-mail_to_robert.bonomo@va.gov.COMPLETENESS:_full_length. NA 27-JAN-2012 Acinetobacter_baumannii_AB0057_chromosome,_complete_genome. NA Moraxellaceae_Rossau_et_al._1991 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acinetobacter_baumannii_B7I2E2_ACIB5.gb Acinetobacter_Brisou_and_Prevot_1954 213155370 Submitted_(17-NOV-2008)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_011586 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1320 NA genomic_DNA NA AB0057 NA Bacterium_anitratum NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 480119 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Moraxellaceae,_Acinetobacter,_Acinetobacter_calcoaceticus/baumannii_complex Direct_Submission NA NC_011586.1 ATGGATCTGGTTTCACGTATACAAAATCTTCCAATTGGCAAATTTCACTACACGCTTTTATGGGTAGTGGGTTTAGGCTGGATGTTTGATGCGATGGATACCGGCATTATCGCTTTTATTATGACAACCCTTGTTAAAGATTGGTCATTAACACCTGCTGAAAGTGGTTGGATTGTCAGTATTGGCTTTGTAGGCATGGCTATAGGTGCAGTTTGTTCTGGTGCCTTGGCAGATCGTTTTGGCCGTAAAACTGTATTTGCGATGACAATGGCAATTTATAGTATTGCGACTGCGTTATGTGCTTTTGCCCCTGATCTAAAGTGGCTATTAATTTTTCGGTTTATTGTTGGGTTGGGGCTAGGTGGTCAATTACCTGTAGCAGTCACGCTGGTCAGTGAATATGTGCCTGCTCATGTTCGTGGAAGATTTATCGTTCTACTTGAAAGTTTTTGGGGATTAGGCTGGTTGGTTGCTGCGCTCATTTCTTATTTTATTATTCCTAAATTTGGCTGGCATATTGCCTTTCTTATAGGTGGACTTCCACTTATTTATATTTTAGTGATTTGGAAAAAAGTCCCTGAATCTATACCGTATTTGATTAACCGTGGTCGTATTGAAGAAGCGCATGCACTGGTACAAAAACTAGAAGCCGAAGCATGTGTGCAAATTGTTCACCATATTGAAGTCGTGCCTGTGGCGATGCGACAAAAAGTTTCATTTAAACAGCTCTGGAGTGGTCAATTTGCTCGTAGAAGTTTAATGCTCTGGCTAATCTGGTTTGGCATTGTGTATTCCTATTACGGCATCTTTACGTGGTTGCCGAGTTTATTGGTGAAACAAGGCTATGACATTGTCAAATCATTTGAATATGTATTGCTTATGATTTTGGCGCAGTTACCGGGCTACTTGGCGGCTGCTTGGTTTGTCGAGCGTTTAGGTCGAAAAATTACACTTGCCGCATTTATCGGTTTTTGTGCTTTATCGGCATATTTCTTTGGACAAGCCGACAGTGTAAATAGCATTATGTTCTGGGGCTGTCTCATGTCATTCTTTAATTTGGGTGCATGGGGAGTGTTATATACCTATACACCAGAACAATATCCAGCCAATATTCGGGCTTTCGGGTCAGGCTGGGCATCGGCAATGGGGCGTATCGGTGGAATTGTCGCGCCAATGGTCGTGACACATATGATGGTTGCTAAAAACGGCTTTAATCACGTTTTTATGATGTTTACTGTGGTTTTACTTGCCGTAGCTTTAGTGATTTTGATATTAGGTGAAGAGACTCAAGGTAAAAGACTAGAGTCGATTGGGCTATAG > 14 AB57_0773 NA citrate-proton_symporter YP_002318171.1 11 MDVVNNRRATFKKILNVTSGNFLEQYDFFLFGFYATYIAAKFFHSDNEYVSLMMTFTVFAAGFLMRPLGAIFLGAYVDKVGRRKGLIVTLSLMAIGTILITFVPGYETIGIIAPILVVIGRLLQGFSAGVESGGVSIYLAEIATDKNRGFITSWQSGSQQIAVVFAALLGYWLNTILTHAQVGEWGWRIPFLIGCLIIPLIFLFRRTLEETEDFKAQKTHPSSKEIFSTLVSNWRIVLAGMMMSAMTTTTFYFITVYTTVYAKRTLEMSVTDSLLATVFVGLSNFFWLPMGGLLSDKIGRRPVLVGITTLAIFTSYPVLSWLVSDISFSNLLITLAYFSFFFGMYNGTMVATLAEVMPKRVRTVGFSLAFSLAAAIFGGMTPMACTFLVENTGNASTPAFWLMLAAVCSLISSLYLCRGSKQKDPDAIAEPAKVSA gamma_subgroup Acinetobacter_baumannii_AB0057 Acinetobacter_baumannii_AB0057 NC_011586 823940..825250 NA NA 0:1311 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001182.AB0057_bacterial_cultures_are_available_from_Dr._Robert_Bonomo_bye-mail_to_robert.bonomo@va.gov.COMPLETENESS:_full_length. NA 27-JAN-2012 Acinetobacter_baumannii_AB0057_chromosome,_complete_genome. NA Moraxellaceae_Rossau_et_al._1991 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acinetobacter_baumannii_B7I6G1_ACIB5.gb Acinetobacter_Brisou_and_Prevot_1954 213155370 Submitted_(17-NOV-2008)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_011586 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1311 NA genomic_DNA NA AB0057 NA Bacterium_anitratum NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 480119 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Moraxellaceae,_Acinetobacter,_Acinetobacter_calcoaceticus/baumannii_complex Direct_Submission NA NC_011586.1 TTAAGCGCTAACCTTTGCAGGTTCAGCAATTGCGTCAGGGTCTTTCTGTTTAGAACCACGACATAAATACAAGCTTGAGATGAGACTACATACCGCAGCGAGCATGAGCCAGAATGCTGGTGTGCTGGCATTACCTGTATTTTCGACAAGGAAGGTACAAGCCATTGGAGTCATACCACCAAAAATCGCGGCTGCAAGACTAAATGCTAAAGAGAAGCCAACGGTACGTACACGTTTTGGCATCACTTCGGCAAGCGTTGCCACCATAGTGCCGTTGTACATACCAAAGAAGAACGAGAAGTAAGCAAGGGTAATAAGTAGGTTTGAGAAGCTAATGTCGCTCACCAACCAGCTTAAAACCGGATAGCTGGTAAAGATCGCAAGAGTCGTAATACCCACTAATACTGGACGACGGCCAATTTTGTCTGAAAGCAAGCCACCCATTGGTAACCAGAAGAAATTCGATAAACCTACAAACACGGTTGCTAAAAGGCTGTCTGTGACCGACATTTCTAAAGTACGTTTCGCATACACGGTGGTGTAAACCGTAATAAAGTAGAACGTAGTAGTGGTCATGGCACTCATCATCATGCCGGCAAGTACAATGCGCCAGTTGCTTACAAGTGTGCTGAAAATTTCTTTTGAAGATGGATGAGTTTTTTGCGCTTTAAAGTCTTCAGTTTCCTCTAAAGTACGACGGAACAAGAAGATTAAAGGAATAATTAAACAGCCAATTAAGAACGGAATACGCCAGCCCCATTCACCTACTTGAGCATGAGTTAAAATGGTGTTGAGCCAGTAACCAAGTAAGGCCGCAAATACAACCGCAATTTGTTGGCTACCAGACTGCCAGCTAGTAATAAAGCCACGGTTTTTATCGGTTGCAATTTCAGCGAGGTAAATTGAAACACCGCCAGATTCAACGCCTGCCGAGAAGCCTTGTAATAGACGGCCAATTACCACCAAAATTGGCGCGATAATACCAATGGTTTCATAACCCGGCACAAAGGTAATTAAGATGGTTCCAATTGCCATAAGACTTAAAGTGACAATCAAACCCTTACGGCGACCGACTTTGTCGACATAGGCACCCAAGAAAATAGCGCCGAGAGGACGCATAAGAAAACCCGCAGCAAATACGGTAAATGTCATCATTAAAGAGACATATTCATTATCAGAATGGAAAAACTTTGCTGCGATATAGGTGGCATAGAAACCAAAAAGAAAAAAATCATACTGTTCTAAAAAGTTGCCACTCGTTACATTTAATATTTTTTTAAAAGTAGCCCTACGGTTATTAACGACATCCAT > 15 HMPREF0012_01944 NA inner_membrane_metabolite_transporter_ygcS EEY79075.1 11 MTNLADVEPISHHQKNAEIIARLERLPVTGRLQFMRITIGIATFFDAYTVLAIAFALPQLITEWHLTPAYVGAIIAAGYVGQLVGAIFFGSLAEKVGRLKVLSFTILLFVAMDISCLFAWSGMSLLIFRFLQGIGTGGEVPVASAYINEFIGAEKRGKFFLLYEVLFPMGLMFAGMAAFFLMPIYGWKVMFIVGLVPSLLVIPLRFFLPESPRWLASKGRFKEADKVVKSFEDGAIKSGKTLPEPVVKDINPQAMAKTDWRELFQGIYRKRTFTLWGMWFCVYMINNAMVTWLPSLYKQHFGLSLQTSLGYGWITSGVGVIASIICALMIDKVGRRPWYSAAFFLAVIPLMSLSILGAKSAMEVVILATLSYAILQTISFSLYLYAAELYPTRLRAMGIGFSTAWLRAGSAIGPVMVGLVVGGYGIQYVFSVLAVVALIGGLVTFLFAIETKGQVLEKLSP gamma_subgroup Acinetobacter_calcoaceticus_RUH2202 Acinetobacter_calcoaceticus_RUH2202 GG704949 2120594..2121979 Ward,D.,_Feldgarden,M.,_Earl,A.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Bochicchio,J.,_Borenstein,D.,_Chapman,S.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Dijkshoorn,L.,_Haas,B.,_Nusbaum,C._and_Birren,B. NA 0:1386 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Source_DNA_provided_by_Lenie_Dijkshoorn_(Dept._of_InfectiousDiseases_C5-P,_Leiden_University_Medical_Center,_P.O._Box_9600,2300_RC_Leiden,_The_Netherlands).Bacteria_provided_by_Lenie_Dijkshoorn_(Dept._of_Infectious_DiseasesC5-P,_Leiden_University_Medical_Center,_P.O._Box_9600,_2300_RCLeiden,_The_Netherlands).Genome_Coverage:_17.29xSequencing_Technology:_454. NA 30-OCT-2009 Acinetobacter_calcoaceticus_RUH2202_genomic_scaffold_supercont1.1,_whole_genome_shotgun_sequence. NA Moraxellaceae_Rossau_et_al._1991 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acinetobacter_calcoaceticus_D0S0J2_ACICA.gb Acinetobacter_Brisou_and_Prevot_1954 262258398 Unpublished NA GG704949 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1386 NA genomic_DNA NA RUH2202 NA Neisseria_winogradskyi NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 575585 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Moraxellaceae,_Acinetobacter,_Acinetobacter_calcoaceticus/baumannii_complex The_Genome_Sequence_of_Acinetobacter_calcoaceticus_strain_RUH2202 NA GG704949.1 ATGACAAATCTAGCGGATGTAGAACCAATTAGTCATCATCAAAAAAATGCGGAAATTATTGCAAGACTTGAACGGCTTCCAGTCACCGGACGTTTGCAATTTATGCGAATTACCATTGGTATAGCGACCTTTTTTGACGCCTATACTGTTCTTGCGATTGCCTTTGCTTTACCCCAACTCATTACCGAATGGCACCTGACGCCCGCCTACGTCGGTGCGATCATTGCCGCGGGCTATGTCGGTCAACTGGTCGGTGCCATCTTTTTTGGTTCTCTTGCCGAAAAAGTCGGTCGCTTAAAAGTACTGTCTTTTACCATTTTACTGTTTGTGGCAATGGACATTTCTTGTCTGTTTGCGTGGAGCGGAATGTCTCTGTTAATTTTCCGTTTCTTACAAGGTATAGGAACAGGTGGCGAAGTACCTGTTGCAAGTGCCTATATTAATGAGTTTATTGGTGCAGAAAAGCGCGGTAAGTTTTTCTTGCTCTATGAAGTTTTATTCCCGATGGGCCTTATGTTTGCAGGCATGGCGGCGTTTTTCCTGATGCCAATTTATGGCTGGAAAGTCATGTTTATTGTGGGCTTAGTTCCATCTTTACTGGTGATTCCTTTACGGTTTTTCTTGCCTGAGTCACCACGTTGGCTTGCTTCAAAAGGTCGTTTTAAAGAAGCCGATAAAGTTGTCAAAAGTTTTGAAGACGGTGCCATCAAAAGCGGTAAAACTTTGCCTGAACCTGTGGTTAAAGACATTAACCCGCAAGCCATGGCAAAAACCGACTGGCGTGAGCTGTTTCAAGGCATTTACCGCAAACGGACCTTTACCCTGTGGGGCATGTGGTTCTGCGTCTATATGATTAACAATGCTATGGTGACTTGGCTGCCATCTCTCTACAAACAACACTTTGGTCTGTCGCTTCAAACCAGTTTAGGTTATGGCTGGATTACTTCGGGCGTGGGTGTGATTGCCTCTATTATCTGTGCGTTAATGATTGATAAAGTGGGCCGCCGTCCTTGGTACAGTGCAGCGTTTTTCTTAGCGGTCATTCCACTCATGAGCCTATCGATTTTAGGTGCAAAATCGGCGATGGAAGTTGTGATTTTAGCAACGCTGAGCTATGCCATTTTGCAGACCATTTCATTCTCTTTATACCTTTACGCTGCCGAACTTTACCCTACTCGCCTACGTGCGATGGGCATTGGTTTTAGTACTGCTTGGCTGCGTGCCGGCTCTGCAATTGGACCTGTTATGGTCGGTCTGGTAGTTGGTGGCTATGGCATTCAATATGTGTTTAGTGTGCTGGCGGTTGTAGCGCTGATTGGTGGCCTTGTGACCTTCTTGTTTGCCATTGAAACCAAAGGCCAAGTGCTCGAAAAACTCTCTCCTTAA > 16 HMP0015_2939 COG:_COG0477;_Pfam:_PF00083;_InterPro:_IPR005828 MFS_family_major_facilitator_transporter EFF81551.1 11 MAATGEVASNSKTRVLFASLVGTTIEFFDFYIYATAAVIIFPHLFFPASSGSAALLQSLATFAIAFIARPVGAALFGHLGDRIGRKATLVAALLTMGVSTVCIGLLPTYAQIGIAAPLLLALCRLGQGLGLGGEWSGAVLLATENAPEGKRAWYGMFPQLGAPIGFILATGSFLLLGAFMTEQAFMTWGWRIPFIASAVLVLVGLYIRLKLHETPAFQKVLDKQKEVNVPFKEVMTKHLSKLILGTIAAICTFVVFYLTTVFALTWGTTQLGYTRTEFLQLQLIATLCFAGFIPLSAILAEKIGRRTTSIAVCILAALFGLVFASLLDSGSPVLVFLFLCIGLSIMGLTYGPIGTILSELFPTSVRYTGSALTFNLAGIFGASFAPYIATKLAENFGLQAVGYYLSAAALLSLIAFLLIRETKNIDVNNQI gamma_subgroup Acinetobacter_haemolyticus_ATCC_19194 Acinetobacter_haemolyticus_ATCC_19194 ADMT01000221 6574..7869 Muzny,D.,_Qin,X.,_Deng,J.,_Jiang,H.,_Liu,Y.,_Qu,J.,_Song,X.-Z.,_Zhang,L.,_Thornton,R.,_Coyle,M.,_Francisco,L.,_Jackson,L.,_Javaid,M.,_Korchina,V.,_Kovar,C.,_Mata,R.,_Mathew,T.,_Ngo,R.,_Nguyen,L.,_Nguyen,N.,_Okwuonu,G.,_Ongeri,F.,_Pham,C.,_Simmons,D.,_Wilczek-Boney,K.,_Hale,W.,_Jakkamsetti,A.,_Pham,P.,_Ruth,R.,_San_Lucas,F.,_Warren,J.,_Zhang,J.,_Zhao,Z.,_Zhou,C.,_Zhu,D.,_Lee,S.,_Bess,C.,_Blankenburg,K.,_Forbes,L.,_Fu,Q.,_Gubbala,S.,_Hirani,K.,_Jayaseelan,J.C.,_Lara,F.,_Munidasa,M.,_Palculict,T.,_Patil,S.,_Pu,L.-L.,_Saada,N.,_Tang,L.,_Weissenberger,G.,_Zhu,Y.,_Hemphill,L.,_Shang,Y.,_Youmans,B.,_Ayvaz,T.,_Ross,M.,_Santibanez,J.,_Aqrawi,P.,_Gross,S.,_Joshi,V.,_Fowler,G.,_Nazareth,L.,_Reid,J.,_Worley,K.,_Petrosino,J.,_Highlander,S.,_Gibbs,R._and_Gibbs,R. NA 0:1296 Acinetobacter_haemolyticus_ATCC_19194_Strain_source,_body_site:_Airways,_nasal_Inquiries_should_be_directed_to_microbe@hgsc.bcm.tmc.edu_This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC._This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_ATCC._The_genomic_DNA_wasprepared_from_a_single_bacterial_isolate._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data_and_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data._The_Roche/454_Lifesciences_sequencewas_assembled_using_the_Roche/454_Lifescience_Newbler_assembler.The_contigs_from_the_Newbler_assembly_were_aligned_with_mappingtools_such_as_Mosaic_and_Crossmatch_and_these_data_were_used_forerror_correction_for_this_version_of_the_draft_assembly._This_draftassembly_meets_the_HMP_draft_quality_standards_(more_than_90%_ofthe_genome_is_included_in_contigs,_more_than_90%_of_a_core_set_ofbacterial_genes_are_found_with_>_30%_identity_and_>_30%_length;more_than_90%_of_the_bases_in_the_assembly_have_more_than_5_foldsequence_coverage,_the_contig_N50_length_is_greater_than_5kb,_thescaffold_N50_length_is_greater_than_20kb,_and_there_is_less_than_1gap_per_5kb).##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_Standard_DraftAssembly_Method_::_Newbler_Assembler_v._2.0.01.12Genome_Coverage_::_21.7xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 01-APR-2010 Acinetobacter_haemolyticus_ATCC_19194_contig00282,_whole_genome_shotgun_sequence. NA Moraxellaceae_Rossau_et_al._1991 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acinetobacter_haemolyticus_D4XT97_ACIHA.gb Acinetobacter_Brisou_and_Prevot_1954 292822654 Submitted_(09-MAR-2010)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ADMT01000221 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1296 NA genomic_DNA NA ATCC_19194 NA Acinetobacter_haemolyticus_(ex_Stenzel_and_Mannheim_1963)_Bouvet_and_Grimont_1986 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 707232 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Moraxellaceae,_Acinetobacter Direct_Submission NA ADMT01000221.1 ATGGCTGCCACTGGTGAGGTGGCAAGCAATTCAAAAACACGTGTACTGTTTGCAAGTCTCGTTGGTACCACAATTGAGTTTTTTGACTTTTATATTTATGCCACTGCCGCAGTCATTATTTTTCCACATCTGTTCTTTCCAGCAAGTAGTGGAAGCGCAGCCTTACTCCAGTCATTAGCCACCTTTGCAATCGCATTTATTGCCCGCCCCGTCGGCGCTGCACTTTTTGGTCATTTAGGCGATCGGATCGGACGTAAAGCCACCTTGGTTGCAGCACTATTGACCATGGGTGTTTCAACTGTCTGTATTGGCTTGTTGCCTACTTATGCTCAAATCGGCATTGCTGCTCCCCTATTATTAGCCTTATGCCGTTTGGGACAAGGACTGGGCTTAGGCGGTGAATGGAGTGGTGCGGTGTTACTTGCGACTGAGAATGCGCCCGAAGGTAAACGTGCATGGTATGGCATGTTCCCTCAATTAGGGGCACCTATTGGATTTATCCTTGCAACAGGTTCATTCCTCTTGCTTGGTGCATTCATGACGGAACAAGCATTTATGACGTGGGGATGGCGTATTCCTTTTATCGCGAGTGCTGTTTTAGTTTTAGTCGGTCTATACATTCGCTTGAAATTACATGAAACACCAGCTTTTCAAAAAGTTCTGGATAAACAAAAAGAAGTAAATGTTCCATTTAAAGAAGTCATGACCAAGCACTTGTCTAAATTGATTCTTGGAACGATTGCTGCAATTTGTACATTTGTGGTGTTCTATCTCACCACTGTTTTTGCACTGACTTGGGGAACTACACAGCTTGGCTATACACGTACTGAATTTTTGCAATTACAGCTTATAGCGACTTTATGTTTTGCTGGCTTTATTCCTTTATCAGCGATTTTAGCGGAGAAAATCGGTCGTCGAACCACGTCGATTGCTGTCTGTATTTTAGCTGCATTGTTTGGTTTAGTCTTCGCAAGCTTGCTTGATTCTGGTAGTCCTGTATTGGTGTTTTTATTCTTGTGTATCGGTTTATCGATCATGGGACTGACTTATGGTCCGATTGGCACAATCTTGTCTGAACTGTTCCCAACGTCTGTACGTTACACGGGTTCGGCACTGACCTTTAATCTAGCAGGCATCTTTGGTGCCTCTTTTGCACCCTACATTGCCACTAAACTTGCTGAAAACTTTGGTTTACAAGCAGTCGGTTATTATCTCAGTGCCGCGGCATTATTATCTCTGATTGCTTTTTTATTGATCCGAGAAACTAAAAATATCGATGTAAATAACCAAATCTAA > 17 HMPREF0014_02353 NA MFS_family_transporter EEW99230.1 11 MIRRYKMTNLADVEQISHHQKNAEIIARLERLPVTGRLQFMRITIGIATFFDAYTVLAIAFALPQLITEWHLTPAYVGAIIAAGYVGQLVGAIFFGSLAEKVGRLKVLSFTILLFVAMDISCLFAWSGMSLLIFRFLQGVGTGGEVPVASAYINEFIGAEKRGKFFLLYEVLFPLGLMFAGMAAFFLMPIYGWKVMFIVGLIPSILVIPLRFFLPESPRWLASKGRFKEADQVVKSFEDGAIKSGKTLAEPVVKEINPQGMAKTDWRELFRGIYRKRTFTLWGMWFCVYMVNNAMVTWLPSLYKQHFGLSLQTSLGYGWITSGVGVIASIICALMIDKVGRRPWYSAAFFLAIIPLMSLSILGAKSAMQVVILATLSYAILQTISFSLYLYAAELYPTRLRAMGIGFSTAWLRAGSAIGPVMVGLVVGGYGIQYVFSVLAVVALVGGLVTFLFAIETKGQVLEKLSP gamma_subgroup Acinetobacter_sp._RUH2624 Acinetobacter_sp._RUH2624 GG704514 2550..3953 Ward,D.,_Feldgarden,M.,_Earl,A.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Bochicchio,J.,_Borenstein,D.,_Chapman,S.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Dijkshoorn,L.,_Haas,B.,_Nusbaum,C._and_Birren,B. NA 0:1404 This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Source_DNA_provided_by_Lenie_Dijkshoorn_(Dept._of_InfectiousDiseases_C5-P,_Leiden_University_Medical_Center,_P.O._Box_9600,2300_RC_Leiden,_The_Netherlands).Bacteria_provided_by_Lenie_Dijkshoorn_(Dept._of_Infectious_DiseasesC5-P,_Leiden_University_Medical_Center,_P.O._Box_9600,_2300_RCLeiden,_The_Netherlands).Genome_Coverage:_20xSequencing_Technology:_454. NA 02-OCT-2009 Acinetobacter_sp._RUH2624_genomic_scaffold_supercont1.20,_whole_genome_shotgun_sequence. NA Moraxellaceae_Rossau_et_al._1991 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acinetobacter_sp_D0C1U2_9GAMM.gb Acinetobacter_Brisou_and_Prevot_1954 260405738 Unpublished NA GG704514 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1404 NA genomic_DNA NA RUH2624 NA Acinetobacter_nosocomialis_Nemec_et_al._2011 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 575564 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Moraxellaceae,_Acinetobacter,_Acinetobacter_calcoaceticus/baumannii_complex The_Genome_Sequence_of_Acinetobacter_sp._strain_RUH2624 NA GG704514.1 TTAAGGAGATAGTTTTTCGAGCACTTGGCCTTTGGTTTCAATGGCAAACAAGAATGTCACCAGACCACCAACGAGTGCCACAACAGCCAGCACACTAAACACATATTGAATGCCATAGCCACCAACCACGAGGCCCACCATCACAGGCCCAATTGCAGAGCCAGCACGAAGCCAAGCAGTACTAAAACCAATGCCCATCGCACGGAGGCGAGTTGGGTAAAGTTCGGCAGCGTAAAGATATAAAGAGAATGAAATAGTCTGCAAAATGGCATAACTCAGCGTTGCTAAAATCACCACTTGCATGGCCGATTTTGCGCCTAAAATCGAAAGGCTCATGAGTGGAATAATCGCCAAGAAAAATGCTGCACTGTACCAAGGGCGGCGACCGACTTTATCAATCATTAACGCACAGATAATAGAAGCAATCACACCTACGCCCGAAGTAATCCAGCCATAACCCAAACTGGTTTGCAGCGACAGACCAAAGTGTTGTTTGTAGAGAGATGGCAGCCAAGTCACCATGGCATTGTTCACCATGTATACGCAAAACCACATGCCCCACAGGGTAAAGGTACGTTTACGGTAAATACCACGGAATAGCTCGCGCCAGTCGGTTTTTGCCATGCCTTGCGGGTTAATTTCTTTAACCACAGGTTCAGCCAAAGTTTTACCGCTTTTGATGGCACCGTCTTCAAAGCTTTTGACGACTTGATCGGCTTCTTTAAAACGACCTTTTGAGGCAAGCCAACGCGGTGACTCAGGTAAGAAAAACCGTAAAGGAATGACCAAGATTGATGGAATTAAGCCCACAATAAACATGACTTTCCAGCCGTAAATTGGCATCAGGAAAAACGCTGCCATACCTGCAAACATAAGACCGAGTGGAAATAAAACTTCATAGAGCAAGAAAAACTTACCGCGCTTTTCTGCACCAATAAACTCATTAATATAGGCACTCGCAACAGGCACTTCGCCACCTGTACCAACGCCTTGTAAGAAACGGAAAATTAACAGCGACATTCCGCTCCACGCAAACAGACAAGAAATATCCATTGCCACAAACAGTAAAATGGTAAAAGACAGCACTTTTAAACGACCGACTTTTTCGGCAAGAGAACCAAAAAAGATCGCACCGACCAGTTGCCCGACATAGCCCGCGGCAATGATCGCACCGACATAGGCAGGCGTGAGGTGCCATTCGGTAATGAGTTGGGGTAAAGCAAAGGCAATCGCAAGAACAGTATAAGCGTCAAAAAAGGTCGCGATACCGATGGTAATTCGCATAAATTGCAATCGTCCGGTGACGGGTAGCCGTTCGAGTCTTGCAATAATTTCCGCATTTTTTTGATGATGACTAATTTGTTCTACATCCGCTAGATTTGTCATCTTATATCTCCTTATCAC > 18 ACIAD2997 Evidence_3_:_Function_proposed_based_on_presence_of_conserved_amino_acid_motif,_structural_feature_or_limited_homolgy;_Product_type_pt_:_transporter MFS_family_transporter YP_047528.1 11 MTSTTTTASPEIATNSKTRVLFASLVGTTIEFFDFYIYATAAVLIFPHLFFPASSGSAAVLQSLATFAIAFIARPIGAALFGHLGDRIGRKATLVAALLTMGVSTVCIGLLPSYAQIGIVAPLLLALCRLGQGLGLGGEWSGAVLLATENAPEGKRAWYGMFPQLGAPIGFILATGSFLLLGVLMSDQAFMQWGWRIPFVASAILVIVGLYIRLKLHETPAFQKVLDKQKEVNIPFKEVITKHFPKLVLGTIAAICTFVVFYLTTVFALNWGTTKLGYSRGEFLELQLIATLCFAAFIPLSAIFAEKFGRKLTSISICALAAVFGLFFSDMLASGNTFVVFLFLCTGLSIMGLTYGPIGTVLSELFPTSVRYTGSALTFNLAGIFGASFAPLIATKLAEAYGLQAVGYYLSAAAILSLIAFLLIRETKDQDVNNQI gamma_subgroup Acinetobacter_sp._ADP1 Acinetobacter_sp._ADP1 NC_005966 2927368..2928678 Barbe,V.,_Vallenet,D.,_Fonknechten,N.,_Kreimeyer,A.,_Oztas,S.,_Labarre,L.,_Cruveiller,S.,_Robert,C.,_Duprat,S.,_Wincker,P.,_Ornston,L.N.,_Weissenbach,J.,_Marliere,P.,_Cohen,G.N._and_Medigue,C. NA 0:1311 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CR543861.COMPLETENESS:_full_length. NA 19-JAN-2012 Acinetobacter_sp._ADP1_chromosome,_complete_genome. NA Moraxellaceae_Rossau_et_al._1991 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Acinetobacter_sp_Q6F8A9_ACIAD.gb Acinetobacter_Brisou_and_Prevot_1954 50083297 Nucleic_Acids_Res._32_(19),_5766-5779_(2004) NA NC_005966 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 15514110 1311 NA genomic_DNA NA ADP1 NA Acinetobacter_sp._ADP1 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 62977 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Moraxellaceae,_Acinetobacter Unique_features_revealed_by_the_genome_sequence_of_Acinetobacter_sp._ADP1,_a_versatile_and_naturally_transformation_competent_bacterium NA NC_005966.1 ATGACGTCAACAACGACTACAGCATCACCAGAAATTGCTACTAACTCAAAAACTCGGGTTTTATTTGCCAGCCTTGTGGGTACCACGATTGAGTTTTTTGATTTTTATATCTATGCCACGGCCGCAGTTCTGATTTTTCCACATCTATTTTTTCCAGCCAGTAGTGGCAGCGCTGCTGTACTCCAGTCTTTAGCCACCTTTGCAATCGCGTTTATTGCTCGTCCTATTGGTGCTGCATTGTTCGGTCATCTGGGCGACCGTATTGGTCGTAAAGCCACGTTAGTTGCAGCACTCTTGACGATGGGCGTTTCGACAGTCTGTATTGGTCTACTTCCCAGTTATGCACAAATTGGGATTGTCGCACCATTATTACTGGCATTATGTCGTTTAGGTCAAGGCTTGGGTTTAGGAGGTGAATGGAGTGGAGCCGTTCTGTTAGCCACTGAAAATGCACCTGAAGGTAAACGTGCATGGTATGGCATGTTCCCTCAGCTTGGTGCGCCGATTGGATTTATCTTGGCGACGGGTTCATTCCTATTGCTGGGTGTATTGATGTCTGATCAAGCATTTATGCAGTGGGGCTGGCGTATTCCTTTTGTCGCCAGTGCAATTTTGGTGATTGTGGGTCTTTATATCCGTTTAAAACTTCATGAAACACCAGCCTTTCAGAAAGTGCTGGATAAACAAAAAGAAGTGAATATTCCTTTTAAAGAAGTTATCACCAAACACTTTCCAAAGCTGGTTCTCGGTACGATTGCTGCCATTTGTACTTTTGTGGTGTTTTATCTGACAACAGTGTTTGCACTGAATTGGGGAACCACCAAGTTAGGCTATTCACGTGGTGAGTTTTTAGAATTACAACTGATTGCTACCCTTTGTTTTGCCGCATTTATCCCCCTTTCTGCAATTTTTGCAGAAAAATTTGGTCGTAAGCTCACTTCAATTAGTATATGTGCGCTCGCTGCGGTGTTTGGACTATTCTTTTCGGATATGTTGGCCTCTGGCAATACCTTTGTAGTGTTCCTGTTTTTATGTACAGGGCTTTCTATCATGGGGTTGACCTATGGTCCAATTGGCACCGTGTTGTCAGAATTATTTCCAACGTCAGTACGTTATACAGGTTCTGCACTCACCTTTAACTTGGCAGGCATATTTGGTGCATCTTTTGCCCCCCTGATTGCGACCAAGCTTGCTGAAGCGTATGGCTTACAAGCGGTGGGATATTATCTCTCTGCGGCTGCTATTTTGTCCTTGATTGCGTTCTTATTGATTCGGGAAACCAAAGATCAGGATGTCAACAACCAGATCTAA > 19 ACTODO_02070 KEGG:_cal:orf19.3526_6.7e-28_ITR2;_myo-inositol_transporter_K08140;_COG:_COG0477_Permeases_of_the_major_facilitator_superfamily;_Psort_location:_CytoplasmicMembrane,_score:10.00 hypothetical_protein EDN81592.1 11 MSHAPTIDDYTPDKVRDLVEKTPASGAKRSLGAIAAVATLGSLLFGYDTGVVAGALPYMYMSGGAGGLNMTTFEEGWVGGLLCIGAAAGAFFGGRLSDRYGRRHNITLLAIVFLFGAIGCAIAPNIWVLYLARIILGFAVGGASATVPVFLSETAPKRLRGFLVATDQMMIVFGQFLAFSMNAIIARLQGGPTVHLTGDAVDASGHVLGQAGTSVAWETVQAAVNIADVTGAGNGMTWRYMLILCSLPAIALWVGIRTVPESSRWYAANLRIVEAIGSLKRVRDEKKDDVAGELNEMLEVQRAESKQEKWSLSQILKVKWARKLLYIGIVLGIADQLTGINTAMYYTPKILNAAGVPMEDAITLNVVSGGISAIGSAVGLWLVARFARRHVGMYQELGITISLAALAAVFAFFISPYLDADGNISGAPNFAPWLVLGIVCLFVFIKQSGTVTWVLVSEIYPAAVRGTALGIAVATLWLANALVSVIFPPLMATVGGAGTYAIFAAINFLSFLFYWKVVPETKYHSLEELELKFQKDYS high_GC_Gram+ Actinomyces_odontolyticus_ATCC_17982 Actinomyces_odontolyticus_ATCC_17982 AAYI02000004 2210551..2212167 Sudarsanam,P.,_Ley,R.,_Guruge,J.,_Turnbaugh,P.J.,_Mahowald,M.,_Liep,D._and_Gordon,J. NA 0:1617 Actinomyces_odontolyticus_(GenBank_Accession_Number_for_16S_rDNAgene:_X53227)_is_a_member_of_the_division_Actinobacteria._In_onecomprehensive_16S_rDNA_sequence-based_enumeration_of_the_colonicmicrobiota_of_three_healthy_adult_humans,_it_represents,_onaverage,_0.017%_of_all_16S_rDNA_sequences_and_9.142_%_of_thesequences_in_its_division_(Eckburg_et._al._(2005))._The_sequencedstrain_was_obtained_from_Deutsche_Sammlung_von_Mikroorganismen_undZellkulturen_GmbH_(DSMZ)_(DSM_43331).We_have_collected_11.8X_coverage_in_plasmid_end_reads_and_454reads._We_will_be_performing_one_round_of_automated_sequenceimprovement_(pre-finishing).Sequencing/Assembly:_The_genomic_DNA_was_purified_from_liquidculture_derived_from_a_single_bacterial_colony._A_hybrid_sequencingstrategy_that_utilized_reads_from_both_454_GS-20_and_ABI_3730xlsequencers_was_devised_and_implemented_to_generate_the_draft_genomesequences._454_reads_were_assembled_using_Newbler_(454_LifeSciences)_into_454_de_novo_contigs._These_de_novo_contigs_wereconverted_in_silico_to_800_base_paired_reads_(superreads)_with400_base_overlaps_with_neighboring_superreads._Finally,_PCAP(Huang,_et_al,_Genome_Research,_13:2164,_(2003))_was_used_toassemble_the_super-reads_and_the_conventional_3730xl_capillaryreads.This_sequenced_strain_is_part_of_a_comprehensive,_sequence-basedsurvey_of_members_of_the_normal_human_gut_microbiota._A_jointeffort_of_the_WU-GSC_and_the_Center_for_Genome_Sciences_atWashington_University_School_of_Medicine,_the_purpose_of_thissurvey_is_to_provide_the_general_scientific_community_with_a_broadview_of_the_gene_content_of_100_representatives_of_the_majordivisions_represented_in_the_intestines_microbial_community._Thisinformation_should_provide_a_frame_of_reference_for_analyzingmetagenomic_studies_of_the_human_gut_microbiome._Further_details_ofthis_effort_are_described_in_a_white_paper_entitled_Extending_OurView_of_Self:_the_Human_Gut_Microbiome_Initiative_(HGMI)(http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMISeq.pdf)._These_studies_are_supported_by_National_Human_GenomeResearch_Institute.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._RNA_genes_were_determinedusing_tRNAscan-SE_1.23_or_Rfam_v8.0._Gene_names_are_generated_atthe_contig_level_and_may_not_necessarily_reflect_any_known_order_ororientation_between_contigs.For_answers_to_your_questions_regarding_this_assembly_or_project,or_any_other_GSC_genome_project,_please_visit_our_Genome_Groups_webpage_(http://genome.wustl.edu/genome_group_index.cgi)_and_email_thedesignated_contact_person.Annotation_was_added_to_the_contigs_in_July_2007,_and_the_CDScomments_were_updated_in_January_2008.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC. NA 14-JAN-2008 Actinomyces_odontolyticus_ATCC_17982_Actinomyces_odontolyticus-2.0_Cont201.13,_whole_genome_shotgun_sequence. NA Actinomycetaceae_Buchanan_1918_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Actinomyces_odontolyticus_A7BEG8_9ACTO.gb not_"Actinomyce"_(sic)_Meyen_1827 145666781 Unpublished NA AAYI02000004 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1617 NA genomic_DNA NA ATCC_17982 NA Actinomyces_odontolyticus_Batty_1958 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Actinomycineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 411466 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Actinomycineae,_Actinomycetaceae,_Actinomyces Draft_genome_sequence_of_Actinomyces_odontolyticus_(ATCC_17982) NA AAYI02000004.1 TCAGGAGTAGTCCTTCTGGAACTTCAGCTCCAGTTCCTCGAGCGAGTGGTACTTCGTCTCGGGGACGACCTTCCAGTAGAAGAGGAAGGAGAGGAAGTTGATGGCTGCGAAAATCGCGTAGGTTCCGGCACCGCCGACGGTGGCCATGAGCGGCGGGAAGATGACGGAGACCAGAGCGTTGGCGAGCCACAGCGTGGCAACCGCGATACCAAGGGCGGTGCCACGCACGGCGGCCGGGTAGATCTCGGAGACGAGAACCCAGGTCACGGTGCCTGACTGCTTGATGAACACGAAGAGGCAGACGATGCCAAGAACCAGCCACGGGGCAAAGTTCGGGGCGCCGGAGATGTTGCCGTCAGCGTCCAGGTAGGGGCTGATGAAGAAGGCGAACACCGCGGCCAGGGCGGCCAGGGAGATCGTGATGCCGAGCTCCTGATACATGCCGACGTGGCGGCGCGCGAAGCGGGCGACGAGCCACAGTCCAACGGCGGAACCGATCGCGGAGATACCGCCCGAGACGACGTTCAGGGTGATGGCGTCTTCCATGGGAACGCCGGCGGCGTTGAGGATCTTCGGCGTGTAGTACATGGCCGTGTTGATGCCGGTCAGCTGGTCGGCGATACCCAGGACGATGCCGATGTAGAGGAGCTTGCGGGCCCACTTAACCTTGAGGATCTGGGACAGCGACCACTTCTCCTGCTTGGACTCGGCGCGCTGGACCTCGAGCATCTCGTTGAGCTCGCCGGCAACGTCATCCTTCTTTTCGTCGCGCACGCGCTTGAGGGAGCCGATGGCCTCGACGATGCGCAGGTTGGCGGCGTACCAGCGTGAGGACTCGGGCACAGTGCGGATGCCGACCCACAGGGCGATGGCGGGCAGCGAGCACAGGATGAGCATGTATCGCCACGTCATGCCGTTACCGGCGCCGGTGACATCGGCGATGTTGACGGCTGCCTGGACGGTTTCCCACGCGACGGAGGTTCCAGCCTGTCCGAGCACGTGGCCGGACGCGTCAACGGCGTCACCGGTCAGGTGCACGGTGGGGCCACCCTGCAGACGGGCGATGATGGCGTTCATAGAGAAGGCCAGGAACTGGCCGAAGACGATCATCATCTGATCCGTCGCGACAAGGAAACCGCGCAGCCGCTTGGGAGCAGTTTCGCTGAGGAAAACGGGAACCGTCGCGGAGGCGCCACCGACGGCGAAGCCGAGGATGATGCGCGCCAGGTAGAGGACCCAGATGTTCGGGGCGATCGCGCAGCCGATGGCGCCGAACAGGAAGACGATTGCCAGCAGCGTGATGTTGTGGCGGCGTCCGTAGCGGTCGGAGAGACGTCCGCCGAAGAACGCACCGGCGGCGGCACCGATGCACAGCAGGCCGCCGACCCAGCCTTCTTCGAAGGTGGTCATGTTCAGACCGCCGGCGCCTCCGGACATGTACATGTATGGCAGGGCGCCAGCGACAACGCCGGTGTCATAGCCAAAGAGGAGCGAGCCGAGCGTCGCGACGGCGGCGATCGCGCCCAGGGAGCGCTTTGCGCCGGAGGCGGGGGTCTTCTCGACGAGGTCGCGCACCTTATCGGGTGTGTAGTCGTCAATCGTTGGAGCGTGTGACAT > 20 HMPREF0970_00242 KEGG:_ach:Achl_0944_4.4e-77_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 sugar_transporter_family_protein EFF80814.1 11 MAHTPTIDDYTPDRVRELVEKTPASGAKRSLGAIAVIATLGSLLFGYDTGVVAGALPYMYMPGGAGGLNMTTFEEGWVGGLLCIGAAAGAFFGGRLSDRFGRRHNITLLAIIFLFGAIGCAIAPNIWVLYLARIILGFAVGGASATVPVFLSETAPKRLRGFLVATDQMMIVFGQFLAFSMNAVIAHMQGGPTVTLTGDAVDVSGHVLGHAGTSVAWETVQAAVNIADVAGTGNGLTWRYMLVLCSLPAIALWIGIRTVPESSRWYAANLRIVEAIGSLKRARDEKKDDVAGEINEMLDIQRAESAQEKWSLSQILTVKWARKLLSIGIVLGIADQLTGINTAMYYTPKILNAAGVPMEDAITLNVVSGGISAIGSAVGLWLVARFARRHVGMYQELGITISLAALSAVFAVFISPYLDGEGNISGAPTFAPWLVLGIVCIFVFIKQSGTVSWVLVSEIYPAAVRGTALGIAVGTLWLANALVAVVFPPLMATVGGAGTYAIFAAINFLSFLFYWKVVPETKFHSLEELELKFQKDYS high_GC_Gram+ Actinomyces_odontolyticus_F0309 Actinomyces_odontolyticus_F0309 ACYT02000011 24734..26350 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Nelson,J.,_Hou,S.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Nash,W.E.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1617 Actinomyces_odontolyticus_F0309_(GenBank_Accession_Number_for_16SrDNA_gene:_X80504)_is_a_member_of_the_Actinobacteria_division_ofthe_domain_bacteria_and_has_been_isolated_from_the_oral_cavity._Thesequenced_strain_was_obtained_from_Floyd_E._Dewhirst_and_JacquesIzard.We_have_performed_one_round_of_automated_sequence_improvement(pre-finishing),_along_with_manual_improvement_that_includesbreaking_apart_any_mis-assembly,_and_making_manual_joins_wherepossible._Manual_edits_also_are_made_where_the_consensus_appears_tobe_incorrect._All_low_quality_data_on_the_ends_of_contigs_isremoved._Contigs_are_ordered_and_oriented_where_possible.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.This_work_was_supported_by_the_National_Human_Genome_ResearchInstitute_and_the_NIH_Roadmap_Human_Microbiome_Projecthttp://nihroadmap.nih.gov/hmp/.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_46.5xSequencing_Technology:_454. NA 01-APR-2010 Actinomyces_odontolyticus_F0309_A_odontolyticus-1.0.1_Cont0.19,_whole_genome_shotgun_sequence. NA Actinomycetaceae_Buchanan_1918_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Actinomyces_odontolyticus_D4TWD3_9ACTO.gb not_"Actinomyce"_(sic)_Meyen_1827 292821859 Submitted_(22-SEP-2009)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ACYT02000011 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1617 NA genomic_DNA NA F0309 NA Actinomyces_odontolyticus_Batty_1958 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Actinomycineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 649742 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Actinomycineae,_Actinomycetaceae,_Actinomyces Direct_Submission NA ACYT02000011.1 ATGGCACACACTCCAACGATTGACGACTACACGCCCGACAGGGTGCGCGAGCTCGTCGAGAAGACCCCCGCTTCCGGTGCGAAGCGCTCCCTGGGCGCAATTGCTGTCATCGCGACGCTTGGCTCTCTCCTCTTCGGCTATGACACCGGCGTTGTCGCTGGCGCCCTGCCATACATGTACATGCCCGGAGGCGCCGGCGGTCTGAACATGACCACCTTCGAAGAAGGCTGGGTCGGCGGCCTGCTGTGCATCGGTGCTGCCGCCGGTGCATTCTTCGGCGGACGCCTCTCCGACCGCTTTGGTCGCCGCCATAACATCACGTTGCTCGCCATCATCTTCCTGTTTGGCGCCATCGGCTGCGCGATTGCCCCGAACATCTGGGTCCTCTACCTGGCGCGTATCATCCTTGGGTTCGCGGTTGGTGGCGCTTCCGCGACGGTTCCCGTCTTCCTCAGCGAAACTGCTCCCAAGCGGCTGCGTGGTTTCCTTGTCGCGACGGATCAGATGATGATCGTCTTTGGCCAGTTCCTGGCCTTCTCTATGAACGCTGTCATCGCTCACATGCAGGGTGGTCCCACTGTCACCTTGACCGGTGATGCCGTGGATGTATCCGGGCACGTGCTCGGCCACGCTGGCACGTCCGTCGCGTGGGAGACCGTCCAGGCCGCCGTCAATATTGCGGATGTCGCCGGCACGGGCAATGGTCTGACCTGGCGCTACATGCTCGTCCTGTGCTCGCTGCCCGCCATCGCCCTGTGGATCGGTATCCGCACTGTGCCCGAGTCCTCGCGCTGGTACGCCGCCAATCTGCGCATTGTCGAGGCCATCGGCTCCCTCAAGCGTGCGCGCGATGAAAAGAAGGACGACGTCGCTGGCGAGATCAACGAGATGCTTGATATTCAGCGTGCAGAGTCTGCTCAGGAAAAGTGGTCGCTGTCCCAGATCCTCACCGTGAAGTGGGCACGCAAGCTCCTCTCTATCGGTATCGTCCTGGGCATCGCCGACCAGCTGACCGGCATCAACACGGCCATGTACTACACGCCGAAGATCCTCAACGCTGCCGGCGTTCCCATGGAAGACGCCATCACCCTGAACGTCGTTTCCGGTGGTATCTCCGCGATCGGTTCCGCCGTGGGCCTGTGGCTCGTCGCCCGATTCGCTCGCCGTCACGTGGGCATGTATCAGGAGCTCGGCATCACGATTTCTCTGGCTGCGCTGTCTGCCGTGTTTGCAGTCTTTATCAGTCCCTACCTAGATGGCGAGGGAAATATCTCCGGCGCCCCGACCTTCGCACCCTGGCTGGTTCTTGGCATCGTCTGCATCTTCGTGTTCATCAAGCAGTCCGGAACGGTGTCCTGGGTTCTCGTTTCCGAGATCTACCCGGCCGCTGTCCGTGGCACTGCCCTCGGTATCGCGGTAGGCACCCTGTGGCTTGCCAACGCGCTCGTAGCCGTTGTTTTCCCACCGCTCATGGCGACCGTCGGTGGCGCTGGTACGTACGCGATCTTCGCAGCCATTAACTTCCTCTCGTTCCTCTTCTACTGGAAGGTCGTCCCCGAGACGAAGTTCCACTCGCTGGAGGAACTGGAACTGAAGTTCCAGAAGGACTACTCCTGA > 21 HMPREF0970_01856 KEGG:_smt:Smal_1514_1.4e-71_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 sugar_transporter_family_protein EFF79308.1 11 MKRTRQARAHHHTFKDEDMSSTTTLTPRDKQARRYATTLALIATLGPFFYGFEGMVLNAAIKAVGSTFELGPILQGVAGAAGVIGGLIGALAAGRISDKIGRKTTLMWVGPFLLVEALLGPISPLLGSLGYPFLLLTRIIGGIGFGAATTVAPGYVAEIAPADIRGRLIGFRQLAIILGLFFAGLINTAVVSITGGAAKPAFGGLMTWQVLFACLIIPALLFVVFTAKIPESPRYLVSVGRTKEAEEILAKLSGEEDPAARVEAIAQSLTITGGAKLSIGQILSSQWRGLVFVGMAIAAFQQLTGINGVFFYSNSLFAAVGFTESMALAQTLLITAFKIVGVLSGIMLVDRVGRKRMLIYGGTLIFVSLGIVATVFTVAPTIDGKPDVADSPVLAFLAVAALCTFLLGFTSSWGPIFSIVMGEMFPNSIRGGAMSLASGADFLVNFLVVLLFPFLIAWSPAGTYWIYCAFGVLAVIFTAKFLTETSGAELEDMDKVVAQK high_GC_Gram+ Actinomyces_odontolyticus_F0309 Actinomyces_odontolyticus_F0309 ACYT02000070 112635..114137 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Nelson,J.,_Hou,S.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Nash,W.E.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1503 Actinomyces_odontolyticus_F0309_(GenBank_Accession_Number_for_16SrDNA_gene:_X80504)_is_a_member_of_the_Actinobacteria_division_ofthe_domain_bacteria_and_has_been_isolated_from_the_oral_cavity._Thesequenced_strain_was_obtained_from_Floyd_E._Dewhirst_and_JacquesIzard.We_have_performed_one_round_of_automated_sequence_improvement(pre-finishing),_along_with_manual_improvement_that_includesbreaking_apart_any_mis-assembly,_and_making_manual_joins_wherepossible._Manual_edits_also_are_made_where_the_consensus_appears_tobe_incorrect._All_low_quality_data_on_the_ends_of_contigs_isremoved._Contigs_are_ordered_and_oriented_where_possible.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.This_work_was_supported_by_the_National_Human_Genome_ResearchInstitute_and_the_NIH_Roadmap_Human_Microbiome_Projecthttp://nihroadmap.nih.gov/hmp/.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_46.5xSequencing_Technology:_454. NA 01-APR-2010 Actinomyces_odontolyticus_F0309_A_odontolyticus-1.0.1_Cont2.4,_whole_genome_shotgun_sequence. NA Actinomycetaceae_Buchanan_1918_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Actinomyces_odontolyticus_D4U0W2_9ACTO.gb not_"Actinomyce"_(sic)_Meyen_1827 292820206 Submitted_(22-SEP-2009)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ACYT02000070 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1503 NA genomic_DNA NA F0309 NA Actinomyces_odontolyticus_Batty_1958 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Actinomycineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 649742 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Actinomycineae,_Actinomycetaceae,_Actinomyces Direct_Submission NA ACYT02000070.1 TCACTTCTGGGCGACGACCTTGTCCATGTCTTCAAGCTCGGCGCCGCTGGTCTCGGTGAGGAACTTCGCCGTGAAGATGACCGCTAGGACGCCGAAGGCGCAGTAGATCCAGTAGGTGCCGGCCGGCGACCAGGCGATGAGGAAGGGGAAGAGGAGGACGACCAGGAAGTTGACGAGGAAGTCGGCACCCGACGCGAGCGACATGGCGCCGCCGCGGATCGAGTTGGGGAACATCTCGCCCATGACGATGGAGAAGATGGGGCCCCACGAGGAGGTGAATCCGAGCAGGAACGTGCACAGGGCCGCGACCGCCAGGAATGCCAGGACGGGGGAGTCCGCGACATCCGGCTTGCCGTCGATGGTGGGGGCGACCGTGAAGACCGTCGCCACGATGCCGAGCGAGACGAAGATGAGGGTGCCGCCGTAGATCAGCATGCGCTTGCGGCCCACGCGGTCCACCAGCATGATGCCCGACAGGACACCGACGATCTTGAAGGCGGTGATGAGCAGGGTCTGGGCCAGGGCCATCGACTCGGTGAAGCCGACGGCGGCGAACAGTGAGTTCGAGTAGAAGAAGACGCCGTTGATACCGGTCAGCTGCTGGAACGCGGCGATCGCCATGCCGACAAACACGAGGCCGCGCCACTGCGAGGATAGGATCTGTCCGATCGAGAGCTTCGCACCGCCCGTGATCGTCAGGGACTGGGCGATGGCCTCGACGCGGGCCGCGGGGTCTTCCTCGCCGGACAGCTTGGCCAGGATCTCCTCGGCCTCCTTGGTGCGGCCCACGGACACGAGGTAACGGGGAGACTCCGGAATCTTCGCCGTAAACACCACGAAGAGCAGGGCCGGGATAATGAGGCAGGCGAAGAGGACCTGCCATGTCATGAGGCCGCCGAACGCCGGCTTGGCAGCGCCACCCGTGATCGAGACGACCGCCGTGTTGATGAGGCCGGCGAAGAACAGGCCCAGGATGATCGCGAGCTGGCGGAAGCCGATGAGACGCCCGCGGATGTCAGCGGGCGCGATCTCGGCGACGTAGCCGGGGGCAACCGTGGTCGCCGCGCCGAAGCCGATGCCGCCAATGATGCGGGTCAGGAGTAGGAAGGGATAGCCGAGGCTACCGAGTAGGGGAGAGATGGGTCCGAGGAGGGCCTCAACAAGCAGGAAGGGACCGACCCACATGAGAGTGGTCTTGCGGCCGATTTTGTCGGAGATGCGACCCGCGGCGAGGGCGCCAATCAGGCCGCCGATGACACCTGCCGCGCCCGCAACGCCCTGCAGGATCGGGCCGAGCTCGAAGGTGGATCCCACGGCCTTGATGGCGGCGTTGAGGACCATGCCCTCGAATCCGTAGAAGAAGGGGCCGAGGGTGGCGATCAGAGCGAGAGTCGTTGCGTAGCGCCTCGCTTGCTTGTCGCGGGGTGTGAGTGTGGTTGTCGATGACATGTCTTCATCCTTGAAGGTGTGGTGATGCGCCCGCGCCTGCCGTGTGCGCTTCAT > 22 HMPREF9006_0789 COG:_COG0477 MFS_family_sugar_transporter EFU61509.1 11 MMSDRWGRRHNITLLAILFFFGAVGNAISPNVWVMYIFRAVLGFAVGGASATVPVYLAETAPKRIRGAIVAVDHLMIVTGQLLAFSINALIATMRGGPELTVTADPSGLLPAEHIGHTISFDTLALMQASRGGTLSTAEYHEFLAQLSVATGNGDTWRYMIILCSIPALALWIGIRLMPESSRWYVAKDRLHEAIGTLKRVRNEAIDGPLVEELADIVAVHRAETSSERKGFGYVWRTPWLRRLMIVGIFLGTTNQLTGVNTVMYYAPKVLQYADMDTSSAIVAQVANGVMSVVGSALGIWLILKFRRRQILIADVIGVGLSLLTIAAVFQFAIAPYMNAQQTPPAWAAYAVLGLMAVFMLIVQSSNGTIVWTMMGELFPNNVRGVMNGTAIFCLWIVNAIVGWTFPVMIEGLGGGLTYTIYGIVNLVVAAVLFHVMPETSGKSLEEIETEMEKHFS high_GC_Gram+ Actinomyces_sp._oral_taxon_180_str._F0310 Actinomyces_sp._oral_taxon_180_str._F0310 AEPP01000009 86952..88325 Muzny,D.,_Qin,X.,_Deng,J.,_Jiang,H.,_Liu,Y.,_Qu,J.,_Song,X.-Z.,_Zhang,L.,_Thornton,R.,_Coyle,M.,_Francisco,L.,_Jackson,L.,_Javaid,M.,_Korchina,V.,_Kovar,C.,_Mata,R.,_Mathew,T.,_Ngo,R.,_Nguyen,L.,_Nguyen,N.,_Okwuonu,G.,_Ongeri,F.,_Pham,C.,_Simmons,D.,_Wilczek-Boney,K.,_Hale,W.,_Jakkamsetti,A.,_Pham,P.,_Ruth,R.,_San_Lucas,F.,_Warren,J.,_Zhang,J.,_Zhao,Z.,_Zhou,C.,_Zhu,D.,_Lee,S.,_Bess,C.,_Blankenburg,K.,_Forbes,L.,_Fu,Q.,_Gubbala,S.,_Hirani,K.,_Jayaseelan,J.C.,_Lara,F.,_Munidasa,M.,_Palculict,T.,_Patil,S.,_Pu,L.-L.,_Saada,N.,_Tang,L.,_Weissenberger,G.,_Zhu,Y.,_Hemphill,L.,_Shang,Y.,_Youmans,B.,_Ayvaz,T.,_Ross,M.,_Santibanez,J.,_Aqrawi,P.,_Gross,S.,_Joshi,V.,_Fowler,G.,_Nazareth,L.,_Reid,J.,_Worley,K.,_Petrosino,J.,_Highlander,S._and_Gibbs,R. NA 0:1374 Actinomyces_sp._oral_taxon_180_strain_F0310_Strain_source,_body_site:_Oral_Inquiries_should_be_directed_to_microbe@hgsc.bcm.tmc.edu_This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC._Thissequence_is_generated_as_a_part_of_the_Human_Microbiome_Project(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),_NationalHuman_Genome_Research_Institute_(NHGRI)_Large-Scale_SequencingResearch_Network_and_the_National_Institute_of_Allergy_andInfectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_Dr._Jacques_Izard_(contactinformation:_Forsyth_Institute,_Department_of_Molecular_Genetics,140_The_Fenway,_Boston,_MA,_02135)._The_genomic_DNA_was_preparedfrom_a_single_bacterial_isolate._The_sequence_generated_included_atleast_10_fold_coverage_of_Roche/454_Lifesciences_FLX_fragment_dataand_at_least_8_fold_clone_coverage_of_Roche/454_Lifesciencespaired-end_data._The_Roche/454_Lifesciences_sequence_was_assembledusing_the_Roche/454_Lifescience_Newbler_assembler._This_draftassembly_meets_the_HMP_draft_quality_standards_(more_than_90%_ofthe_genome_is_included_in_contigs,_more_than_90%_of_a_core_set_ofbacterial_genes_are_found_with_>_30%_identity_and_>_30%_length;more_than_90%_of_the_bases_in_the_assembly_have_more_than_5_foldsequence_coverage,_the_contig_N50_length_is_greater_than_5kb,_thescaffold_N50_length_is_greater_than_20kb,_and_there_is_less_than_1gap_per_5kb).##Genome-Assembly-Data-START##Finishing_Goal_::_Standard_DraftCurrent_Finishing_Status_::_Standard_DraftAssembly_Method_::_Newbler_Assembler_v._2.3-04192010Genome_Coverage_::_41.4xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 21-DEC-2010 Actinomyces_sp._oral_taxon_180_str._F0310_contig00009,_whole_genome_shotgun_sequence. NA Actinomycetaceae_Buchanan_1918_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Actinomyces_sp_E6KRC0_9ACTO.gb not_"Actinomyce"_(sic)_Meyen_1827 315313368 Submitted_(30-NOV-2010)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA AEPP01000009 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1374 NA genomic_DNA NA F0310 NA Actinomyces_sp._oral_taxon_180 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Actinomycineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 888052 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Actinomycineae,_Actinomycetaceae,_Actinomyces Direct_Submission NA AEPP01000009.1 ATGATGTCCGACCGCTGGGGACGCCGCCACAATATCACGCTCCTCGCGATCCTGTTCTTCTTCGGGGCGGTCGGCAACGCCATCTCCCCCAACGTGTGGGTGATGTACATCTTCCGCGCGGTCCTCGGCTTCGCCGTCGGCGGCGCCTCGGCCACTGTTCCCGTATACCTGGCCGAAACGGCCCCCAAACGCATCCGCGGTGCGATCGTCGCGGTCGACCATCTCATGATCGTGACCGGTCAGCTCCTGGCCTTCTCGATCAACGCGCTGATCGCCACGATGCGCGGCGGACCCGAGTTGACCGTCACCGCCGACCCCTCGGGTCTGCTTCCCGCCGAGCACATCGGCCACACGATCTCGTTCGATACCCTGGCGCTCATGCAGGCCTCGCGTGGTGGCACGCTCAGCACTGCGGAGTACCACGAGTTCCTCGCCCAGCTATCCGTCGCCACCGGCAACGGCGACACGTGGCGCTACATGATCATCCTGTGTTCCATCCCCGCCCTCGCCCTGTGGATCGGCATTCGTCTCATGCCCGAATCCTCGCGCTGGTACGTGGCCAAGGACCGCCTGCACGAGGCGATCGGCACCCTCAAGCGCGTGCGCAACGAGGCCATCGATGGGCCCCTGGTGGAGGAGCTCGCGGACATTGTGGCCGTCCACCGGGCCGAGACCTCCAGTGAGCGTAAAGGCTTCGGCTACGTCTGGCGAACCCCCTGGCTACGCAGGCTCATGATCGTCGGCATCTTCCTGGGCACGACCAACCAGCTCACGGGCGTTAACACCGTCATGTACTACGCACCCAAGGTCCTGCAGTACGCCGACATGGACACCTCGTCGGCGATCGTCGCTCAGGTCGCCAACGGCGTCATGTCTGTCGTTGGATCCGCACTCGGTATCTGGCTGATCCTCAAGTTCCGTCGCCGCCAGATCCTCATCGCCGACGTCATCGGCGTGGGTCTGTCCCTCCTGACCATTGCGGCTGTGTTCCAATTCGCCATCGCGCCGTACATGAACGCACAGCAGACACCCCCGGCGTGGGCAGCCTACGCCGTCCTTGGCCTCATGGCCGTGTTCATGCTCATTGTTCAGTCCTCGAATGGGACGATCGTGTGGACAATGATGGGCGAGCTCTTCCCGAACAACGTCCGCGGGGTCATGAATGGGACCGCTATCTTCTGCCTGTGGATCGTCAACGCCATCGTCGGCTGGACCTTCCCGGTTATGATCGAGGGCCTGGGCGGCGGCCTGACCTATACCATCTACGGCATTGTCAACCTCGTGGTTGCCGCCGTCCTCTTCCATGTCATGCCCGAGACCTCGGGCAAGTCGCTGGAGGAGATCGAAACGGAGATGGAGAAGCACTTCTCCTGA > 23 HMPREF0058_1526 Pfam:_PF00083 hypothetical_protein EEH65556.1 11 MKIARSSAQRRLRLLLACTGVATGGAWGSVALALAHDHASASLLQGQAATAETVRIIVLLAALPLGALVGALPLDLVSHALGRRPATLVCATLVMVGAVVGAVSAAVASTWGQSVGALVTGLGVGGFTIVTPKLAHELAERGHRRLVPRLAASLPAGAGLALLAGEAGELLLPGQALVLGWLAPLTSGVLVVLVATSLPETPHWYVAHGKVEAAHAALRRMTDPLEAAVGIDWVMMDAGMLGEQKALSASDLRVDRVRRTVVVGAVLELVQGLPLGLTAICLTPAALALRAGGCAPVWGVAALACAWMVLGIVARRRRPEHMLLAWVLAGTGMAACGLVLLTLLGRMGLAGDQWVLVVVSTILVAAHYVLIAPACTGGTDPLVPPWLLRSQRRAEAVNRPLVQLVSVLCPTLMLALGVSGPVVLGVCLGLQLTSLLLVLLALPRLATALR high_GC_Gram+ Actinomyces_urogenitalis_DSM_15434 Actinomyces_urogenitalis_DSM_15434 ACFH01000109 50354..51706 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1353 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_DSMZ._The_genomic_DNA_wasprepared_from_a_single_bacterial_colony._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data,_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_to_the_Illumina/Solexa_data_withmapping_tools_such_as_Mosaic_and_Crossmatch_and_these_data_wereused_for_error_correction_for_this_version_of_the_draft_assembly.This_draft_assembly_meets_the_HMP_draft_quality_standards_(morethan_90%_of_the_genome_is_included_in_contigs,_more_than_90%_of_acore_set_of_bacterial_genes_are_found_with_>_30%_identity_and_>_30%length;_more_than_90%_of_the_bases_in_the_assembly_have_more_than_5fold_sequence_coverage,_the_contig_N50_length_is_greater_than_5kb,the_scaffold_N50_length_is_greater_than_20kb,_and_there_is_lessthan_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_11xSequencing_Technology:_454;_ABIAnnotation_was_added_to_the_contigs_in_April_2009. NA 15-APR-2009 Actinomyces_urogenitalis_DSM_15434_contig00109,_whole_genome_shotgun_sequence. NA Actinomycetaceae_Buchanan_1918_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Actinomyces_urogenitalis_C0W6N2_9ACTO.gb not_"Actinomyce"_(sic)_Meyen_1827 221246038 Submitted_(09-JAN-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACFH01000109 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1353 NA genomic_DNA NA DSM_15434 NA Actinomyces_urogenitalis_Nikolaitchouk_et_al._2000 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Actinomycineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 525246 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Actinomycineae,_Actinomycetaceae,_Actinomyces Direct_Submission NA ACFH01000109.1 ATGAAGATCGCACGAAGCTCAGCGCAGCGCCGTCTGCGCCTCCTGCTGGCGTGCACCGGCGTGGCTACCGGCGGTGCCTGGGGCTCGGTGGCGCTCGCCCTCGCTCACGACCACGCCAGCGCCTCGCTGCTGCAAGGACAGGCGGCGACGGCGGAGACGGTGAGGATCATCGTCCTTCTGGCTGCGCTGCCGCTGGGCGCACTGGTCGGGGCGCTGCCCCTGGACCTGGTCTCCCACGCGCTGGGACGACGGCCGGCGACGTTGGTGTGTGCCACCTTGGTCATGGTCGGAGCCGTGGTCGGGGCCGTGAGCGCCGCCGTGGCCTCCACCTGGGGGCAGTCGGTCGGGGCGCTGGTCACGGGTCTGGGTGTCGGCGGCTTCACCATCGTGACGCCCAAGCTGGCTCACGAGCTGGCCGAGCGCGGGCACCGCAGGCTCGTTCCCCGTCTTGCTGCCTCGCTGCCAGCAGGAGCGGGCCTGGCGCTGCTTGCCGGTGAGGCCGGTGAGCTGCTCCTGCCGGGCCAGGCCCTGGTGCTCGGGTGGCTGGCCCCCTTGACCTCCGGCGTCCTGGTCGTCCTGGTCGCCACCAGCCTGCCTGAGACGCCTCACTGGTACGTCGCCCACGGCAAGGTCGAGGCCGCTCACGCTGCCCTGCGCCGGATGACCGATCCGCTCGAGGCCGCGGTCGGGATCGACTGGGTGATGATGGACGCCGGGATGCTCGGTGAGCAGAAGGCGCTGAGCGCGAGCGACCTGCGCGTGGACCGGGTGCGCCGGACCGTCGTGGTCGGTGCGGTGCTTGAGCTGGTCCAGGGGCTGCCGCTGGGGCTGACGGCGATCTGCCTGACGCCGGCGGCCCTGGCGCTTCGTGCAGGAGGGTGTGCGCCGGTGTGGGGTGTCGCCGCGCTGGCGTGCGCGTGGATGGTGCTGGGGATCGTCGCCAGGCGCCGTCGTCCCGAGCACATGCTGCTGGCCTGGGTGCTGGCTGGTACCGGGATGGCGGCCTGCGGCCTGGTGCTCCTGACGCTGCTGGGGCGCATGGGCCTGGCTGGGGACCAGTGGGTGCTGGTGGTGGTGTCCACGATCCTCGTCGCCGCCCACTACGTGCTTATCGCCCCGGCCTGCACCGGCGGCACCGATCCGCTGGTGCCGCCCTGGCTGCTGCGCTCCCAGCGTCGCGCTGAGGCCGTCAACCGCCCGCTTGTCCAGCTCGTGTCAGTCCTGTGCCCGACGCTCATGCTCGCGCTGGGGGTGAGTGGCCCGGTCGTCCTCGGGGTGTGCCTGGGGCTGCAGCTGACAAGTCTGCTGCTCGTGCTGCTCGCGCTGCCGCGGCTGGCTACGGCGCTGCGCTGA > 24 Avi_0190 NA sugar_ABC_transporter_permease YP_002548118.1 11 MSFDREKAHRQSRVATASGWIGSALEYYDFFIYATAAALVFPQLFFPSVDPTTAIVASLTTYGVGYVSRPIGAFVLGHMGDVYGRKKMMLTCLFLMGFSTLMVGLLPTYAQIGIWAPIFLVVLRLIQGFAVAGEISGASSMILEHAPTGRRGFFASFALQGVQAGQILAAAVFLPLAHYMEPAAFNSWGWRIPFLLSIFVVIVGFVIRRLVEETPTFVNASESGAVSKAPIVEAFRHGWADIIRVMCMSLMNVIPTVTTVFGAAYAVQPAYGIGFSKDVYLWIPVLGNIVAVLVIPFIGGLSDRIGRKPPIIIGSLLSGALSFGYLYAISIHNVPMAIVMSLLMWGVIYQGYNAVFPSFYPELFQSRIRVSSMAIAQNVGTAITALFPALFTAVAPPGSLNIPIVIGCWTLAITVISALAALSARETYRISINELGNKTAKPITKDEYDRMRAQSMAKA alpha_subgroup Agrobacterium_vitis_S4 Agrobacterium_vitis_S4 NC_011989 171038..172417 Slater,S.C.,_Goldman,B.S.,_Goodner,B.,_Setubal,J.C.,_Farrand,S.K.,_Nester,E.W.,_Burr,T.J.,_Banta,L.,_Dickerman,A.W.,_Paulsen,I.,_Otten,L.,_Suen,G.,_Welch,R.,_Almeida,N.F.,_Arnold,F.,_Burton,O.T.,_Du,Z.,_Ewing,A.,_Godsy,E.,_Heisel,S.,_Houmiel,K.L.,_Jhaveri,J.,_Lu,J.,_Miller,N.M.,_Norton,S.,_Chen,Q.,_Phoolcharoen,W.,_Ohlin,V.,_Ondrusek,D.,_Pride,N.,_Stricklin,S.L.,_Sun,J.,_Wheeler,C.,_Wilson,L.,_Zhu,H._and_Wood,D.W. NA 0:1380 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000633.Strain/DNA_available_from_Tom_Burr,_Cornell_University,tjb1@cornell.edu._A._vitis_S4_was_isolated_by_Dr._Erno_Szegedi_in1981_from_aerial_gall_that_developed_on_a_two-year-old_woodygrapevine_cane.COMPLETENESS:_full_length. NA 01-DEC-2011 Agrobacterium_vitis_S4_chromosome_1,_complete_genome. NA Rhizobiaceae_Conn_1938 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Agrobacterium_vitis_B9JYL8_AGRVS.gb Polymonas 222147015 J._Bacteriol._191_(8),_2501-2511_(2009) NA NC_011989 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives 19251847 1380 1 genomic_DNA NA S4;_ATCC_BAA-846 NA Rhizobium_vitis_(Ophel_and_Kerr_1990)_Young_et_al._2001 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 311402 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Rhizobiaceae,_Rhizobium/Agrobacterium_group,_Agrobacterium Genome_sequences_of_three_agrobacterium_biovars_help_elucidate_the_evolution_of_multichromosome_genomes_in_bacteria NA NC_011989.1 CTACGCCTTCGCCATGGATTGCGCACGCATACGATCGTACTCGTCCTTGGTGATCGGCTTTGCCGTTTTGTTGCCCAGCTCATTGATACTGATTCGGTAGGTTTCCCGGGCCGAGAGGGCGGCCAGCGCTGAAATCACGGTAATGGCCAGCGTCCAGCAGCCGATGACGATGGGGATATTCAGCGAGCCGGGCGGTGCAACGGCTGTGAACAGGGCAGGGAACAGGGCCGTGATTGCCGTGCCGACATTCTGCGCGATGGCCATTGAGGAGACGCGGATGCGGCTCTGGAACAATTCCGGATAGAATGACGGGAAGACGGCGTTATATCCCTGATAGATCACGCCCCACATCAACAGCGACATCACTATGGCCATCGGGACATTGTGAATGCTGATCGCATAGAGATAGCCAAACGACAAAGCGCCAGACAGCAATGATCCGATGATGATCGGTGGTTTGCGGCCAATACGGTCGGAAAGTCCGCCGATAAAGGGAATGACCAGAACGGCAACAATATTGCCGAGAACCGGAATCCACAGATAGACGTCCTTGCTGAAGCCGATACCGTATGCTGGCTGCACCGCATAGGCTGCGCCGAACACTGTTGTCACGGTTGGAATGACGTTCATAAGCGACATGCACATGACGCGGATGATATCGGCCCAACCATGACGGAAGGCCTCGACGATGGGCGCTTTCGAGACCGCGCCACTTTCGCTGGCGTTGACGAAGGTTGGTGTTTCCTCAACCAGACGGCGGATGACAAAGCCGACGATTACCACGAAGATCGACAGCAGAAAGGGAATACGCCAGCCCCAGCTGTTGAATGCCGCAGGCTCCATATAGTGGGCGAGCGGCAAAAACACGGCGGCAGCCAAAATTTGTCCGGCCTGGACGCCCTGAAGTGCGAAGGAGGCGAAAAAGCCCCGTCGGCCGGTTGGTGCATGTTCCAGAATCATTGACGACGCACCTGAAATTTCACCGGCGACAGCAAAACCCTGGATCAGGCGAAGCACGACCAGAAAAATCGGAGCCCAGATGCCGATTTGCGCATACGTGGGCAACAGGCCGACCATCAGTGTCGAAAAGCCCATGAGAAACAGGCAGGTCAGCATCATTTTCTTGCGACCGTAAACGTCGCCCATATGCCCCAGAACAAACGCACCGATTGGGCGGCTGACATAGCCCACGCCGTAGGTTGTCAATGATGCGACAATCGCTGTCGTCGGATCTACAGATGGAAAAAACAGCTGAGGAAAAACCAGTGCCGCAGCTGTGGCGTAAATGAAGAAATCATAATATTCCAGCGCGGAGCCAATCCAGCCGCTGGCAGTGGCGACACGAGATTGTCTGTGTGCCTTTTCACGATCAAAGGACAT > 25 HCAG_04011 NA hypothetical_protein XP_001541913.1 NA MGASRGIDEGLISGTVNQKSFIAEYHLDDPDMGTKERASSAFIVTDRIGRIWATRELCAIWMVGIAIFMTADGRIGQVYAGRFIAGIGIGQTTVVAPTYLAEISPRAIRGLCTCAFSGSVYLGIMLSYFASWGSSIHLSNTSAKQWIVPTTLHFIFAGIIVILSFTVYESPRYLIKANKQDQAAKTMAKLRNLPSDHPYVQTEMTDIQAQLEREREATLGSHMFGPLKELFILPSNRYRVMIGLTSQLLSQWSGANSITIYAPRFFALLGTTGQSEKLFATAIFGVVKFVSSLVCALILVDFLGRKRALGYGITLQFVSMLYVAIYLAVVPSIQSGFIPDGHSKRAGTAAIVSIYVSGVGWALGWNNIQYLINAEIFPLRVRSLATSMVMCFHFANQYGNSKAVPTMLLDTAMRPYGTFFFFAMVTLIGLVWMWFFLPETAGKSLEAMDEMFSLPWYIIGSKGAAITAGSGHAEAYRSGDVEKNPISSECREFIPRVKKEEGNQ bitunicate_ascomycetes Ajellomyces_capsulatus_NAm1 Ajellomyces_capsulatus_NAm1 XM_001541863 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Ma,L.-J.,_Henn,M.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Yandava,C.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Alvarado,L.,_Taylor,J.,_Sil,A._and_Goldman,B. NA 0:1515 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001813980).COMPLETENESS:_incomplete_on_both_ends. NA 28-FEB-2008 Ajellomyces_capsulatus_NAm1_conserved_hypothetical_protein_(HCAG_04011)_partial_mRNA. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_capsulata_A6R303_AJECN.gb Ajellomyces 154282200 Unpublished fungi XM_001541863 NA NA Onygenales sac_fungi NA 1515 NA mRNA NA NAm1 NA Histoplasma_capsulatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 339724 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces Annotation_of_the_Ajellomyces_capsulatus_(Histoplasma_capsulatum)_genome NA XM_001541863.1 ATGGGAGCCAGTCGAGGCATTGATGAAGGGCTTATTTCGGGCACAGTGAATCAGAAGTCATTTATCGCCGAATATCATCTGGATGACCCTGATATGGGTACTAAAGAGAGGGCTAGTAGCGCATTTATTGTGACGGATCGTATCGGACGGATCTGGGCAACCCGAGAGTTATGTGCGATCTGGATGGTCGGCATCGCCATATTTATGACTGCAGATGGGCGGATTGGACAAGTCTACGCTGGTCGTTTCATCGCTGGCATTGGGATCGGACAAACCACTGTTGTAGCTCCCACCTATCTCGCGGAAATTTCTCCACGAGCAATACGCGGCCTTTGCACCTGTGCCTTTTCTGGATCAGTGTATCTTGGTATCATGTTGAGCTATTTTGCTAGCTGGGGGAGCTCGATACACCTTAGCAACACCTCAGCTAAGCAATGGATTGTACCGACAACCCTTCATTTCATTTTTGCTGGAATCATAGTCATCCTTTCATTTACAGTTTACGAGTCGCCCAGGTACTTGATCAAGGCCAATAAGCAGGATCAGGCTGCTAAAACCATGGCTAAGTTGCGCAATCTCCCGTCAGATCATCCATACGTTCAAACGGAGATGACGGACATTCAAGCTCAGCTTGAGCGAGAACGCGAAGCTACCCTAGGGTCACACATGTTTGGACCACTCAAAGAGCTCTTTATATTGCCTTCCAACCGTTATCGGGTTATGATCGGACTTACGTCGCAATTACTCAGTCAATGGTCAGGAGCAAATAGCATAACTATCTATGCCCCCCGGTTTTTCGCGCTGCTGGGCACGACAGGGCAATCAGAGAAACTTTTCGCAACAGCAATTTTTGGTGTGGTGAAATTCGTGTCCTCTCTCGTTTGCGCTCTTATCTTGGTCGATTTCTTGGGCCGCAAACGTGCACTTGGATATGGAATAACGCTGCAGTTTGTCAGCATGCTATACGTGGCGATTTATCTAGCCGTTGTCCCATCGATACAAAGCGGCTTTATACCCGATGGGCACTCGAAGCGTGCTGGAACAGCAGCGATAGTATCCATCTATGTGTCCGGGGTGGGCTGGGCACTTGGCTGGAATAACATCCAGTACCTCATCAATGCAGAAATTTTCCCACTTCGAGTCCGGTCGTTGGCTACGTCAATGGTGATGTGCTTCCACTTCGCCAATCAATATGGCAATTCGAAAGCGGTCCCGACAATGCTGCTTGATACAGCCATGAGGCCATATGGAACTTTCTTCTTCTTTGCGATGGTCACTCTCATAGGTCTTGTATGGATGTGGTTTTTCCTGCCAGAAACAGCCGGAAAATCGCTTGAGGCGATGGACGAAATGTTCAGTCTGCCCTGGTACATCATTGGAAGTAAAGGAGCGGCGATAACGGCGGGAAGCGGGCATGCCGAGGCGTACAGGAGTGGAGACGTAGAGAAGAACCCCATCTCATCGGAGTGCAGAGAGTTCATTCCCCGGGTCAAGAAAGAGGAGGGGAACCAGTAG > 26 HCAG_04506 NA hypothetical_protein XP_001540666.1 NA MPLLVNPFRQQDHSSFPGVVVPLAQAPRHRKFSHSNPNPGDGDKADNVAEKGSSSSLSDRQYSGWTVEAIRAEVESDAATSGRDTAYDRKSKVINLAIQDIGMGKYQWQLFVLCGFGWLADNLWLQGVALTLPSLSVEFDIDASYVRFTTCSLFVGLCVGAVFWGTASDMIGRRLAFNLTLLITGVFGLAAGGSPTWVGVCSLFACLGLGVGGNLPVDGALFLEFLPFASGNLLTMLSIWWPVGTLVGSMIAWGLIPNFSCDPSAVLCTKENNMGWRYLVITLGGLTFVMFLCRFFLFHLYESPKFLLSRGRQADAVATVHAIAYKNGANTWLTSEILNEIGGYPEEIPAEEQKLSSAEVIKRQLAKFSGQRIAPLFATKKLGFTTVLLWICWATIGMGYPLFNAFLPQYLGNNGETPVSIVYRNYAITAVVGVPGSILACYTVDIPYIGRKGTMAISTALTVVTLFCFTISTDPDVQLACSSLEAFFQNIMYGVLYAYTPEVFPAPNRGTGTGIASCLNRICGLLAPIVAIYGGSANPKAPVYASGGLMLAAFVAMVLLPIETRGRASL bitunicate_ascomycetes Ajellomyces_capsulatus_NAm1 Ajellomyces_capsulatus_NAm1 XM_001540616 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Ma,L.-J.,_Henn,M.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Yandava,C.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Alvarado,L.,_Taylor,J.,_Sil,A._and_Goldman,B. NA 0:1713 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001813979).COMPLETENESS:_incomplete_on_both_ends. NA 28-FEB-2008 Ajellomyces_capsulatus_NAm1_conserved_hypothetical_protein_(HCAG_04506)_partial_mRNA. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_capsulata_A6R4E8_AJECN.gb Ajellomyces 154279705 Unpublished fungi XM_001540616 NA NA Onygenales sac_fungi NA 1713 NA mRNA NA NAm1 NA Histoplasma_capsulatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 339724 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces Annotation_of_the_Ajellomyces_capsulatus_(Histoplasma_capsulatum)_genome NA XM_001540616.1 ATGCCCCTCCTCGTGAATCCCTTCAGGCAACAGGACCACTCGTCCTTCCCTGGCGTCGTGGTGCCCCTGGCGCAGGCCCCGCGCCACCGGAAATTCTCCCACTCCAACCCCAACCCTGGAGACGGCGACAAGGCGGACAATGTGGCAGAGAAGGGCTCATCGTCTTCCCTGAGTGACCGGCAGTACTCCGGGTGGACCGTGGAGGCCATCAGGGCGGAGGTGGAGAGCGATGCAGCGACGTCGGGCAGGGATACTGCATATGACCGGAAATCGAAAGTCATCAACTTGGCCATCCAGGATATTGGGATGGGGAAGTATCAATGGCAGCTGTTTGTGCTCTGTGGGTTTGGTTGGCTGGCGGATAACCTCTGGTTACAGGGTGTTGCTTTGACCTTGCCTAGTCTCTCGGTGGAATTTGACATTGACGCTTCATACGTCCGCTTCACCACTTGCTCTCTGTTTGTTGGCCTGTGTGTCGGCGCCGTGTTCTGGGGCACTGCGTCGGATATGATCGGTCGCCGTCTCGCCTTCAACCTGACCCTTCTCATCACTGGCGTTTTTGGGCTTGCTGCGGGTGGCAGCCCAACTTGGGTTGGGGTCTGTTCTTTGTTCGCATGCCTGGGCTTGGGAGTCGGCGGTAATCTTCCAGTCGATGGCGCGCTGTTTTTGGAATTCCTGCCCTTTGCGTCAGGAAATCTTCTGACGATGTTGAGTATCTGGTGGCCCGTTGGGACCCTTGTTGGAAGCATGATCGCCTGGGGCCTCATCCCAAATTTCTCCTGCGACCCATCCGCGGTACTTTGCACGAAGGAAAACAACATGGGATGGCGATATCTAGTCATCACGCTGGGCGGGCTGACATTCGTCATGTTCCTATGCCGATTCTTCCTGTTCCATCTCTACGAGTCGCCCAAGTTCCTGCTCTCCCGGGGCCGCCAGGCCGATGCCGTAGCCACGGTCCATGCTATAGCGTACAAGAACGGAGCCAACACCTGGCTGACTTCTGAGATCTTGAACGAGATTGGCGGCTACCCTGAGGAAATCCCCGCTGAGGAGCAGAAGCTGTCGAGTGCGGAGGTTATCAAGCGGCAGCTCGCAAAGTTTTCTGGCCAGCGTATTGCACCGCTTTTTGCGACCAAGAAGCTTGGGTTTACGACTGTTCTTCTTTGGATCTGCTGGGCCACCATTGGCATGGGATACCCCCTTTTCAATGCTTTCCTGCCCCAATACCTGGGGAATAACGGAGAAACACCCGTCTCGATTGTCTACCGCAACTACGCCATAACCGCCGTCGTCGGCGTCCCAGGCTCCATCCTGGCCTGCTACACCGTCGATATCCCCTACATCGGCCGCAAGGGCACCATGGCCATCTCCACCGCGCTCACTGTCGTGACGCTCTTCTGCTTCACCATCTCCACCGACCCGGACGTCCAGCTCGCCTGCTCATCCCTGGAGGCCTTCTTCCAGAACATCATGTACGGCGTGCTGTACGCGTACACGCCCGAGGTGTTCCCCGCGCCCAACCGCGGCACCGGCACGGGCATCGCGAGCTGCCTGAACCGCATCTGCGGCCTGCTGGCGCCCATCGTTGCCATCTACGGCGGCAGCGCGAATCCCAAGGCCCCGGTCTATGCGTCTGGCGGGCTTATGCTGGCGGCGTTTGTGGCGATGGTGCTATTGCCTATTGAGACGCGGGGGCGGGCGAGTTTGTAG > 27 HCAG_07066 similar_to_monosaccharide_transporter hypothetical_protein XP_001537644.1 NA MESKFEKLFVKGTGVPSKSLDNRLSSDDLVEFDEGFVDTPIPTLTWRSFAMGLSVSMGGFIFGYDTGQIAGVLESDDFRRRFGELEASGETYHFSRVRAGLIVALLSIGTLIGALVAAPFADRFGRKWTMSGFCVIIIVGVIVQMTSEYPKWYQVVLGRWVAGLGVGALSVLVPLYQSESAPRHIRGAMISGAWRIPLGITFIRILILGIGALLFPDSPRFDYRAGRIDKAKKSLMRFYGIPHNHKQLHLELEGIREKYEEDMAAQDERWYHMFSAPGMKHRLLLGATLHGLHQLTGANFFFYTAATVFRGFGVQNRYISQVILGAIDFGGSCLSLYTVENFGRRKSLIVGAIWMSVCCAVYASIGHFELNEAMPELTPGPGRAMVVVACLFMLGFASTWGPIVWVIIAEIYPSRYRARAMGLATASNWLWNFLLAFFTPFITEAIDFRYGYIFSGCLFVGVATVYFGVIEACVFQPGQAGMNHQGIPRRSLVKIKLPITMVLPTHAIFPNQVHAKIQIVVRQH bitunicate_ascomycetes Ajellomyces_capsulatus_NAm1 Ajellomyces_capsulatus_NAm1 XM_001537594 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Ma,L.-J.,_Henn,M.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Yandava,C.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Alvarado,L.,_Taylor,J.,_Sil,A._and_Goldman,B. NA 0:1575 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001813975).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Ajellomyces_capsulatus_NAm1_hypothetical_protein_(HCAG_07066)_partial_mRNA. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_capsulata_A6RBQ8_AJECN.gb Ajellomyces 154273584 Unpublished fungi XM_001537594 NA NA Onygenales sac_fungi NA 1575 NA mRNA NA NAm1 NA Histoplasma_capsulatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 339724 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces Annotation_of_the_Ajellomyces_capsulatus_(Histoplasma_capsulatum)_genome NA XM_001537594.1 ATGGAATCGAAATTTGAGAAGCTTTTTGTTAAAGGAACAGGCGTCCCGTCGAAGTCTTTAGATAATCGCCTTTCTTCAGATGACCTAGTGGAATTTGACGAAGGCTTCGTCGATACCCCGATCCCTACGTTGACATGGCGCTCGTTCGCTATGGGCTTGTCCGTGTCGATGGGAGGGTTCATTTTTGGATATGACACTGGCCAGATCGCAGGCGTACTGGAGTCGGATGATTTCAGAAGGCGGTTCGGTGAGCTCGAGGCCTCTGGCGAAACCTATCATTTCTCACGTGTTCGCGCTGGCCTAATTGTGGCCTTGCTCTCCATTGGAACGCTCATAGGAGCATTGGTTGCTGCACCTTTTGCCGACAGATTTGGCCGGAAGTGGACAATGTCCGGTTTCTGTGTGATAATTATTGTCGGTGTTATTGTTCAAATGACTTCCGAATATCCTAAATGGTATCAGGTGGTTCTTGGCCGTTGGGTTGCGGGTCTTGGTGTCGGTGCGCTTTCGGTGCTGGTTCCACTATATCAGAGCGAGAGCGCCCCACGGCATATTCGTGGTGCTATGATAAGCGGTGCCTGGCGGATTCCGCTCGGGATAACTTTCATCAGGATATTGATCCTGGGCATTGGGGCGTTACTCTTCCCAGACTCCCCCCGTTTTGATTATCGGGCGGGGCGTATTGACAAAGCGAAAAAGTCATTGATGCGGTTCTACGGCATACCACATAATCACAAACAGCTCCACCTAGAACTCGAAGGAATCCGTGAAAAGTACGAGGAAGATATGGCTGCACAAGATGAGCGCTGGTATCACATGTTTTCCGCCCCCGGAATGAAGCATAGACTTCTGCTTGGAGCCACTTTGCACGGTCTGCACCAGCTCACAGGGGCTAATTTCTTTTTCTATACTGCGGCAACTGTGTTCAGGGGTTTTGGTGTCCAAAACAGATATATTTCACAAGTTATCCTTGGCGCCATTGATTTCGGGGGATCTTGCCTCAGCTTGTATACAGTTGAGAATTTTGGCCGTCGCAAGTCCCTAATAGTTGGCGCAATCTGGATGTCCGTGTGCTGCGCGGTTTACGCTTCCATCGGTCATTTTGAACTCAACGAAGCCATGCCAGAACTCACGCCTGGCCCTGGGAGAGCGATGGTTGTAGTCGCTTGTTTGTTCATGCTAGGGTTTGCCAGTACCTGGGGACCGATAGTCTGGGTTATCATCGCAGAAATATATCCTTCCCGCTATCGTGCCAGAGCCATGGGCCTTGCGACAGCATCGAACTGGCTTTGGAATTTTCTGCTCGCCTTCTTCACTCCCTTTATCACCGAGGCTATTGACTTCAGATACGGTTACATCTTCTCTGGCTGCCTCTTCGTTGGCGTGGCAACTGTATATTTTGGTGTCATCGAAGCTTGCGTATTCCAACCTGGACAAGCGGGGATGAATCACCAAGGAATCCCCCGACGCTCGCTGGTGAAAATCAAACTTCCTATCACAATGGTGCTTCCAACCCATGCGATATTTCCGAACCAAGTTCACGCGAAGATCCAAATAGTTGTGCGCCAACATTAA > 28 HCBG_01147 NA arabinose-proton_symporter EEH11692.1 NA MRLFEPFIELGASSDRSSSELDHITTTTSNRKASHATASTTTPFPTQRQPSFLYSRRESLTAAERARRNLNAKLANPLAGLSHATLMKRGGRYARQHHIGDEEDIRAFELGAVLAQAPEKYEDVEGLTEKELKVLREEFTNRWSQPRLMYLVIVLCSLSAAVQGMDESVVNGAQIFYKSQFGIGGLDSRSTWLVGLVNSAPYLCCAFIGCWLTVPFNHWFGRRGTVFITCVFSAIACFWQGFVNSWWHLFISRFALGFGIGPKSATVPIYAAETTPPAIRGALVMQWQMWTAFGIMLGYMSDLVFFNVPDTPNVTGLGWRLMLGSAMFPAVLVCTFVFICPESPRWYMSKGSHYKAYRSMCRLRFIKVQAARDLFYMHTLLEAEAAMKLGQAKILELITVPRNRRALIASEIVMFMQQFCGVNVIAYYSSEIFLDAGFSQKAALAASFGFGVINWLFAIPAIYTIDTFGRRNLLLVTFPLMGIFQLLTGFSFWIPTDGSATMRRAHTGCVALGIYLFGIAYSPGEGPVPFTYSAEAYPLYVRSYGMALATATTWFFNFMLAITWPSLKNSFKPQGAFGWYAGWNMVGFVLVLLFMPETKGKTLEELDQVFSVPTMMHAKYGAGELVYYFRRYVLRQKELKKVVLYERDGDGEGRRRMRDGSESESSGADAAINLDFNGVTQELSDDGRLENG bitunicate_ascomycetes Ajellomyces_capsulatus_G186AR Ajellomyces_capsulatus_G186AR GG663363 3517840..3518335 Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Sil,A.,_Goldman,B.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Klein,B.,_McEwen,J.G.,_Puccia,R.,_Goldman,G.H.,_Felipe,M.S.,_Nino-Vega,G.,_San-Blas,G.,_Taylor,J.,_Mendoza,L.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:496 Histoplasma_is_a_dimorphic_fungus._The_mold_or_mycelial_form_existsin_soil_contaminated_with_droppings_of_bats_or_birds_such_asstarlings_or_chickens,_where_it_absorbs_nutrients_from_dead_organicmatter_and_produces_infectious_spores._When_these_spores_areinhaled_and_encounter_the_warm_moist_environment_of_the_lungs,_theyundergo_a_transformation_to_the_yeast_or_parasitic_form.Sequencing_technology:_ABI_3730Genome_coverage:_11.50X_(10.11X_Q>20). NA 23-MAR-2009 Ajellomyces_capsulatus_G186AR_genomic_scaffold_supercont2.1,_whole_genome_shotgun_sequence. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_capsulata_C0NDF1_AJECG.gb Ajellomyces 225562266 Unpublished fungi GG663363 arabinose-proton_symporter NA Onygenales sac_fungi NA 496 NA genomic_DNA NA G186AR NA Histoplasma_capsulatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 447093 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Ajellomyces_capsulatus_strain_G186AR NA GG663363.1 ATGAGGCTCTTCGAACCCTTCATAGAACTAGGTGCTTCCTCCGACCGCTCCTCCTCCGAACTCGACCATATCACCACCACTACCTCGAATCGCAAAGCCTCCCATGCCACTGCAAGCACGACAACCCCGTTCCCCACACAACGGCAGCCCTCGTTTCTCTACTCACGCCGCGAGTCCCTCACGGCCGCCGAGCGGGCACGCAGAAATCTCAATGCCAAACTCGCCAATCCGCTCGCCGGTCTCAGCCATGCTACTCTGATGAAGCGCGGCGGCCGCTATGCGCGTCAGCACCACATTGGCGACGAAGAGGATATCCGCGCTTTTGAGCTGGGTGCTGTTCTGGCGCAGGCGCCAGAGAAGTACGAGGATGTCGAGGGCTTGACGGAGAAAGAGTTGAAGGTGCTTAGGGAAGAATTCACGAATCGATGGTCGCAGCCGCGACTCATGTATTTGGTTATTGTTCTCTGCTCGCTCAGTGCGGCAGTCCAGGGAATGG > 29 HCBG_04378 NA trehalose_transporter EEH07499.1 NA MGPVEKPEGPERFSVDAGDAMAPKFHIKLRAKLGMVQRNCIHDNFDESTMEATAISASPLADQAPVRFQFTPLSLQSNPPHPHIGLLIEPCAQHICVWPGLNCMTDPRHAVGVEPPARDADCATSRSSSQISQNAKLATDKEQRMTLLQGLKLYPKAAAWSVLISTCIVMEGYDVCLVNNFYAFPQWNQKYGVQLENGNYQVPATWQAALSNGAVVGEIIGLFINGWASERFGYRYTIVTCLLFLAGFITIFFTAARVEALLVGEILCGIPWGVFQTLCVSYATEVCPVALRSYLTTYVNFCWGLGQLLGIGVLQAMLSRPDEWSYRIPYALQWIWPVPLALVILMAPESPWWLVRKGKTEEAKRALLRLTSLNRETGFDADETIAMIVHTTALEQKITSGASYLDCFKGVDLRRTEIVCMIWAIQNLSGNSFSNYSTYFLEQAGVSTTHAYTFAMGQYGINMVGVLGAWFLMSRGIGRRTLYMLGLSGLCIILFIMGFLGFVPEGNRDQSSLATGSMMLIWALIYQVSVGTVCYSLVSELSSRRLQIKTVVLGRIFYNIAAIICNVLTPYMLNPSAWNWGNFAGFFWGGSCFCCIVYTYFRVPEPRGRSFAELDILFERGVSARNFSETVVDVFGEKEQTEVLNDSRKGPVAHFIEPRDEKRTLF bitunicate_ascomycetes Ajellomyces_capsulatus_G186AR Ajellomyces_capsulatus_G186AR GG663367 1271296..1272681 Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Sil,A.,_Goldman,B.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Klein,B.,_McEwen,J.G.,_Puccia,R.,_Goldman,G.H.,_Felipe,M.S.,_Nino-Vega,G.,_San-Blas,G.,_Taylor,J.,_Mendoza,L.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:>1386 Histoplasma_is_a_dimorphic_fungus._The_mold_or_mycelial_form_existsin_soil_contaminated_with_droppings_of_bats_or_birds_such_asstarlings_or_chickens,_where_it_absorbs_nutrients_from_dead_organicmatter_and_produces_infectious_spores._When_these_spores_areinhaled_and_encounter_the_warm_moist_environment_of_the_lungs,_theyundergo_a_transformation_to_the_yeast_or_parasitic_form.Sequencing_technology:_ABI_3730Genome_coverage:_11.50X_(10.11X_Q>20). NA 23-MAR-2009 Ajellomyces_capsulatus_G186AR_genomic_scaffold_supercont2.5,_whole_genome_shotgun_sequence. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_capsulata_C0NLJ8_AJECG.gb Ajellomyces 225558780 Unpublished fungi GG663367 trehalose_transporter NA Onygenales sac_fungi NA 1386 NA genomic_DNA NA G186AR NA Histoplasma_capsulatum NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 447093 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Ajellomyces_capsulatus_strain_G186AR NA GG663367.1 TCAGAACAGCGTCCGCTTCTCGTCTCGTGGCTCAATAAAATGTGCCACTGGGCCTTTCCTAGAGTCATTGAGAACTTCAGTTTGTTCCTTCTCTCCAAAGACATCTACCACAGTTTCAGAGAAATTCCTTGCACTAACGCCACGCTCGAAGAGGATATCCAATTCCGCAAAGGACCGACCGCGCGGTTCAGGAACACGGAAATAGGTGTAAACGATGCAACAAAAGCACGAACCACCCCAGAAAAAACCCGCAAAGTTACCCCAATTCCACGCGCTAGGGTTCAACATGTATGGGGTCAACACGTTACAGATGATAGCCGCTATATTGTAAAAAATCCTTCCCAATACGACGGTCTTGATTTGTAGACGCCGGCTCGAGAGCTCGCTCACCAGAGAGTAGCAGACCGTGCCGACGGAGACTTGGTAGATCAGGGCCCAAATGAGCATCATAGACCCGGTGGCAAGTGAGCTTTGGTCGCGGTTGCCCTCAGGGACGAAACCAAGGAAACCCATTATGAAGAGAATAATGCAGAGACCACTCAGGCCGAGCATGTAAAGGGTCCTTCGGCCGATGCCGCGTGACATGAGAAACCACGCACCCAAAACGCCTACCATGTTAATTCCATATTGTCCCATGGCGAAGGTATATGCGTGAGTGGTCGACACACCAGCCTGTTCGAGGAAGTATGTCGAGTAGTTGGAAAACGAGTTGCCACTAAGATTCTGGATGGCCCAAATCATACAAACAATTTCCGTCCGGCGCAAGTCGACTCCCTTGAAACAGTCAAGATAGCTGGCACCACTGGTAATTTTCTGTTCTAACGCTGTGGTATGGACAATCATGGCAATCGTCTCGTCCGCGTCAAAGCCAGTCTCTCGATTCAAACTCGTCAGACGAAGGAGGGCGCGTTTCGCTTCCTCCGTCTTGCCTTTTCTCACTAGCCACCACGGGGATTCTGGCGCCATTAAAATCACGAGGGCAAGAGGGACAGGCCAAATCCATTGCAATGCGTACGGTATTCGGTACGACCATTCATCAGGTCGACTTAGCATGGCCTGGAGTACTCCAATTCCAAGGAGTTGGCCAAGACCCCAGCAGAAATTGACATAGGTCGTAAGATAGCTCCGTAGGGCAACAGGACAGACTTCGGTAGCGTAACTGACGCATAAGGTCTGGAAAACGCCCCACGGGATACCGCACAGGATCTCACCTACTAACAGAGCCTCCACACGAGCTGCAGTGAAGAATATCGTAATAAACCCGGCAAGGAAAAGTAGGCAAGTTACAATCGTGTATCGATATCCAAAACGTTCGGAGGCCCAGCCGTTGATAAATAGACCGATGATTTCGCCAACGACTGCACCATTACTAAGGGCTGCTTGCCA > 30 HCBG_04614 NA maltose_permease EEH07735.1 NA MTFINKDDAENQENTINAGNSETEIGAEAQEATTLERELDIRIALKLYPKAAAWSFFFSLGVIMTGYGPQIIGNLYGVPRFQQDFGYLFNGKWIISAAWQSGLSMGSPIGQVVGALAATYPMEIFGRKKTFSICVVLTAGCVFIQFFARSLKVLVVGELLGGLILGTYAVIAPAYASEVCPVVLRGILTAYVNLCFVIGQFIANGVSAATHGLDNHWAYSAPFATQWFWPTVILAGISFAPESPWWLVRRGRLQDAENSLRRLAASSVDVKPTLSMIIETDRLEQQMEAGTTFRDCFKKSNLRRTHIAIGVYSIQILSGVYLIGFSNYFFTLIGLSTDDAYNMGISLLGVGFLGCILSWILLAYFGRRAIYSSGLLGLATILFIIGILDCVPNYMQRPSIAWVQTSMMLVWNLIYNLSVGPVCFVILCECSATKLRGKTIAISTAIQAILGIVITVMIPYMINPDAGNMRGKIGFIFGGLASMSFVWTYFYVPETKGRTYEELDIMFERKVPTREFTDYSIL bitunicate_ascomycetes Ajellomyces_capsulatus_G186AR Ajellomyces_capsulatus_G186AR GG663367 1927109..1927243 Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Sil,A.,_Goldman,B.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Klein,B.,_McEwen,J.G.,_Puccia,R.,_Goldman,G.H.,_Felipe,M.S.,_Nino-Vega,G.,_San-Blas,G.,_Taylor,J.,_Mendoza,L.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:>135 Histoplasma_is_a_dimorphic_fungus._The_mold_or_mycelial_form_existsin_soil_contaminated_with_droppings_of_bats_or_birds_such_asstarlings_or_chickens,_where_it_absorbs_nutrients_from_dead_organicmatter_and_produces_infectious_spores._When_these_spores_areinhaled_and_encounter_the_warm_moist_environment_of_the_lungs,_theyundergo_a_transformation_to_the_yeast_or_parasitic_form.Sequencing_technology:_ABI_3730Genome_coverage:_11.50X_(10.11X_Q>20). NA 23-MAR-2009 Ajellomyces_capsulatus_G186AR_genomic_scaffold_supercont2.5,_whole_genome_shotgun_sequence. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_capsulata_C0NM84_AJECG.gb Ajellomyces 225558780 Unpublished fungi GG663367 maltose_permease NA Onygenales sac_fungi NA 135 NA genomic_DNA NA G186AR NA Histoplasma_capsulatum NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 447093 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Ajellomyces_capsulatus_strain_G186AR NA GG663367.1 CTATAGAATACTGTAGTCTGTAAACTCTCTAGTAGGCACTTTTCTTTCAAACATGATATCGAGCTCCTCGTAAGTTCGTCCTTTAGTTTCAGGAACGTAAAAATAAGTCCATACAAAACTCATGGAAGCAAGACC > 31 HCBG_04170 NA carboxylic_acid_transporter EEH07291.1 NA MASGWFYSPAQIKRYCASRISSLKPPETKLRNPYHIIRELNRQQWLFFSAGFFSWTWAGVDFFVVSLCVTEIAQAFQVNDSDVSWAITVTLMLRPAGAFISGVCADRYGRKWPTIVNLVLFVVLELAGGFAINMRQFLAIRALYGIAMGGIFGSAAATALEDLPYEARGIMSGLFQQGYALGYLISATLYSAFVPTTPHGWRSLFWASAGPPVVLIIFRWYLAETNHFIAMKAEQEAMASAESSSEGVNKGSHSGLRTFFGDGTRAFQENWVLFLYMVLITSAFNFCSHGSQDLYPTFLKEQVGTSPAATTTITVVGQIGSIIGGATMGYLSTPYGRRLVMIISCICGGVLVPAYVYTRSNALIISAFLEQFFVGGVWGPIPIHLSELTPPALRGLMVGFTYQLGNMVSSASATIQSVLGEKFPLPDSETGEKRFDYGKVFVIFMAVTWAYMCLGMLLGPEISREERDEEAQAAMQLYQLQRQGLNPEEVGQVRARLRKAEEGHSQEVKSGEIGKTAYTTTKQVAGSIAERV bitunicate_ascomycetes Ajellomyces_capsulatus_G186AR Ajellomyces_capsulatus_G186AR GG663367 643857..643937 Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Sil,A.,_Goldman,B.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Klein,B.,_McEwen,J.G.,_Puccia,R.,_Goldman,G.H.,_Felipe,M.S.,_Nino-Vega,G.,_San-Blas,G.,_Taylor,J.,_Mendoza,L.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:81 Histoplasma_is_a_dimorphic_fungus._The_mold_or_mycelial_form_existsin_soil_contaminated_with_droppings_of_bats_or_birds_such_asstarlings_or_chickens,_where_it_absorbs_nutrients_from_dead_organicmatter_and_produces_infectious_spores._When_these_spores_areinhaled_and_encounter_the_warm_moist_environment_of_the_lungs,_theyundergo_a_transformation_to_the_yeast_or_parasitic_form.Sequencing_technology:_ABI_3730Genome_coverage:_11.50X_(10.11X_Q>20). NA 23-MAR-2009 Ajellomyces_capsulatus_G186AR_genomic_scaffold_supercont2.5,_whole_genome_shotgun_sequence. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_capsulata_C0NN43_AJECG.gb Ajellomyces 225558780 Unpublished fungi GG663367 carboxylic_acid_transporter NA Onygenales sac_fungi NA 81 NA genomic_DNA NA G186AR NA Histoplasma_capsulatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 447093 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Ajellomyces_capsulatus_strain_G186AR NA GG663367.1 ATGGCATCTGGGTGGTTCTACTCGCCCGCTCAGATAAAACGGTATTGCGCGTCGAGGATTTCGAGTCTCAAGCCGCCAGAG > 32 HCBG_06699 NA sugar_transporter EEH04748.1 NA MPYVLVTICCAFAALGSFLFGYDCGIISSSIAQDDFVQRFKGQLNDASTGGIVSSFTGERSFHLDLHSDPLIDVPREGARVTNVIISLVGGAIVGSLGVSYLSDLHGRRMVIFVGGILGTLGACLQGAASTIAMLIVGRFTAGVAVGIMSATIPVYCQWVGFGSSHARYSFSWRFPLSLQAFPALLLVVGALFLPESPRWLIEHGQSQRGYDTLVRLHSTRAHSNTSLIQQEYKQICETISIEQRESSKSWRDILLKNPSWRRRILLAAGIQAFTQCSGVNVIQFYGPRLYATLGFSTSRSLMIIGISGALAQTWNTLCLFLLDRVGRRKLLIPSLLGMGATLCVEATLSHYFNPDSSTNAHALRSAVAMYFVFSLFFTPLGVLSWIYPAEIFSTPIRARGTSVSTFVNWSFNLLFAQCAPIGLSRLEYRFFYFFMAFNWVGAAMVWLWYPETVGKTLEEVEDVFRDGNLTSRVTRVANGLTPRNSGCEEASVSPAGGPVQETKGAV bitunicate_ascomycetes Ajellomyces_capsulatus_G186AR Ajellomyces_capsulatus_G186AR GG663372 149131..149601 Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Sil,A.,_Goldman,B.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Klein,B.,_McEwen,J.G.,_Puccia,R.,_Goldman,G.H.,_Felipe,M.S.,_Nino-Vega,G.,_San-Blas,G.,_Taylor,J.,_Mendoza,L.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:471 Histoplasma_is_a_dimorphic_fungus._The_mold_or_mycelial_form_existsin_soil_contaminated_with_droppings_of_bats_or_birds_such_asstarlings_or_chickens,_where_it_absorbs_nutrients_from_dead_organicmatter_and_produces_infectious_spores._When_these_spores_areinhaled_and_encounter_the_warm_moist_environment_of_the_lungs,_theyundergo_a_transformation_to_the_yeast_or_parasitic_form.Sequencing_technology:_ABI_3730Genome_coverage:_11.50X_(10.11X_Q>20). NA 23-MAR-2009 Ajellomyces_capsulatus_G186AR_genomic_scaffold_supercont2.10,_whole_genome_shotgun_sequence. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_capsulata_C0NUT5_AJECG.gb Ajellomyces 225556407 Unpublished fungi GG663372 sugar_transporter NA Onygenales sac_fungi NA 471 NA genomic_DNA NA G186AR NA Histoplasma_capsulatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 447093 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Ajellomyces_capsulatus_strain_G186AR NA GG663372.1 ATGCCCTACGTTCTGGTGACGATTTGCTGCGCATTTGCTGCTTTGGGCTCCTTTCTTTTTGGCTACGATTGCGGTATCATCTCGTCGAGTATTGCCCAGGATGACTTCGTACAGAGATTCAAGGGTCAATTGAACGACGCCTCTACCGGCGGTATTGTTTCGTCTTTCACTGGTGAGCGGTCATTCCACCTTGACCTACATTCTGATCCTCTGATCGATGTGCCTCGAGAAGGAGCCAGAGTAACTAATGTCATTATTTCCCTCGTAGGAGGCGCTATTGTTGGATCTCTTGGAGTCTCATACCTATCCGATCTCCATGGTCGACGGATGGTCATTTTCGTTGGCGGAATCCTGGGCACTCTAGGAGCTTGTCTCCAAGGCGCAGCGTCTACAATTGCAATGTTAATTGTAGGGCGCTTTACCGCCGGAGTAGCCGTTGGGATAATGTCTGCTACCATCCCTGTTTATTGC > 33 HCBG_08197 NA sugar_transporter EEH04071.1 NA MPMLICAITFFNLSPSAFCFRRLEEAIRIWRNLQFLINTLMMAQQAIHSKDASPPEEAPVSESGGFHVVFKNPYLFGVALLILLQFTSLGGLLFGYDQGVVSGVLTMESFGALFPRIYSDSSFKGWFVSTLLLAAWLGSLVNGPFADYIGRKLSIIVAVVVFLVGSAIQAGAVNLEMLFVVSITVGILLSYWIDYGTNYIGGSRCAPNIPHSGGTPSSPAFDPYNDVGPNGCDGQSDASWRIPFALQIIPAIILGAGMILFPDSPRWLLMKDRDEDALATLGKLRRQPTDDPTLVAEYLEIKASVIVENTFAAQKYAGMSGAKLHAAQYYSLVSTWPRFERLSIGCCVMFFQQFMGCNAMIYYAPTIFSQLGLDGNTTSLLATGVYGIVNCLSTLPALFWIDKVGRRVLLMCGATGTCISLVIVGAIIGKYGSALVDHADAGWAGIAFIYIYDINFSYSFAPIGWVLPSEIFNLSIRSKAISITTSTTWMCNFIIGLVTPDMLESITWGTYIFFAAFCMLALAFTFFFVPETRGKHVYLSPVKPIWSASPKVPSDIL bitunicate_ascomycetes Ajellomyces_capsulatus_G186AR Ajellomyces_capsulatus_G186AR GG663375 698043..698061 Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Sil,A.,_Goldman,B.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Klein,B.,_McEwen,J.G.,_Puccia,R.,_Goldman,G.H.,_Felipe,M.S.,_Nino-Vega,G.,_San-Blas,G.,_Taylor,J.,_Mendoza,L.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:19 Histoplasma_is_a_dimorphic_fungus._The_mold_or_mycelial_form_existsin_soil_contaminated_with_droppings_of_bats_or_birds_such_asstarlings_or_chickens,_where_it_absorbs_nutrients_from_dead_organicmatter_and_produces_infectious_spores._When_these_spores_areinhaled_and_encounter_the_warm_moist_environment_of_the_lungs,_theyundergo_a_transformation_to_the_yeast_or_parasitic_form.Sequencing_technology:_ABI_3730Genome_coverage:_11.50X_(10.11X_Q>20). NA 23-MAR-2009 Ajellomyces_capsulatus_G186AR_genomic_scaffold_supercont2.13,_whole_genome_shotgun_sequence. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_capsulata_C0NXK5_AJECG.gb Ajellomyces 225555542 Unpublished fungi GG663375 sugar_transporter NA Onygenales sac_fungi NA 19 NA genomic_DNA NA G186AR NA Histoplasma_capsulatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 447093 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Ajellomyces_capsulatus_strain_G186AR NA GG663375.1 ATGCCCATGCTAATCTGCG > 34 HCDG_01485 NA MFS_myo-inositol_transporter EER43455.1 NA MQSFHSPHAIADTAVADTHEDFELQEMSSAAATSPEAPLLAPRDAAPRSPPPRYSDHQFGNDAASNDGDSRRSLGQAPAAAPAESGGWFIWTLTCSAGISGLLFGYDTGVISSTLVSIRTDLSGHHLTTLDKSLITSCTSLFALIASPFAGILGDKLGRRPIILIADALFIVGALWQAASSTVWSMILGRSLVGLGVGAASLVTPLYISELSPPDIRGRLVTILSLFVTGGQVVAYTIGWLFSTTHAGWRWMVGLGALPGIIQLSILLFLPETPRWLVRAERQPEARRVIHKIYGASNPRMPEQLVRDIERELVAEENAVDELLKPIDQETSDHHWFRLPRGWAALFQIDGNRRALAIACMLQALQQLCGFNSLMYFSATIFSLLAFSSPTLTSLSVAVTNFLFTLLAFSLIDRIGRRRILLSSVPIMTAALLLCAVAFSVFDPPTNGDDPPPPPQEPGGGSVSALAPLAPLLILTSLTIYTAAYASGIGTIPWQQSELFPLGVRSLGSALATGTNWGSNFVVGLSFLPMMDWISPVWTFVMYAVICGAGWGLTWAIYPEMSGLGLEEVRGLLVAGWGVRESVEGFKRRRGERRSEEGEGL bitunicate_ascomycetes Ajellomyces_capsulatus_H143 Ajellomyces_capsulatus_H143 GG692420 136840..138028 Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Sil,A.,_Goldman,B.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Klein,B.,_McEwen,J.G.,_Puccia,R.,_Goldman,G.H.,_Felipe,M.S.,_Nino-Vega,G.,_San-Blas,G.,_Taylor,J.,_Mendoza,L.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:>1189 Genome_Coverage:_3.82X_(3.53X_Q>20)Sequencing_Technology:_ABI. NA 19-JUN-2009 Ajellomyces_capsulatus_H143_genomic_scaffold_supercont2.2,_whole_genome_shotgun_sequence. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_capsulata_C6H7S4_AJECH.gb Ajellomyces 240279927 Unpublished fungi GG692420 MFS_myo-inositol_transporter NA Onygenales sac_fungi NA 1189 NA genomic_DNA NA H143 NA Histoplasma_capsulatum NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 544712 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Ajellomyces_capsulatus_strain_H143 NA GG692420.1 CTACAGACCCTCCCCTTCTTCACTTCTCCTCTCCCCCCTCCTCCTCTTAAATCCCTCTACACTCTCCCTAACGCCCCATCCAGCCACAAGCAACCCCCTGACCTCCTCCAACCCCAGTCCACTCATCTCCGGATATATCGCCCAAGTCAATCCCCACCCCGCCCCGCAAATAACCGCATACATCACAAACGTCCACACGGGAGATATCCAATCCATCATCGGCAGGAACGAGAGCCCGACGACAAAATTAGACCCCCAGTTCGTCCCCGTGGCAAGCGCTGAGCCGAGCGAACGCACACCTAAAGGAAATAGCTCGGATTGCTGCCAGGGTATCGTGCCGATGCCGGAGGCGTAGGCAGCGGTGTAGATTGTGAGGGAAGTGAGGATAAGGAGAGGCGCGAGAGGGGCGAGCGCTGAAACCGATCCTCCGCCCGGTTCCTGTGGCGGCGGTGGCGGGTCGTCGCCGTTTGTTGGGGGATCGAAGACTGAGAAGGCGACGGCGCAGAGGAGCAAGGCTGCGGTCATGATGGGGACAGAGGAGAGGAGGATGCGGCGGCGGCCGATGCGGTCGATGAGCGAGAAGGCGAGGAGGGTGAAGAGGAAGTTTGTCACGGCGACGGAGAGGGAGGTTAGAGTCGGCGAGGAGAATGCTAGGAGCGAGAAGATGGTTGCGCTGAAATACATGAGTGAGTTGAAGCCGCAGAGTTGCTGGAGCGCTTGGAGCATGCAGGCGATGGCCAAGGCGCGGCGGTTGCCGTCGATCTGAAATAGAGCGGCCCAGCCACGGGGGAGACGGAACCAGTGGTGGTCGGACGTTTCTTGATCTATGGGTTTGAGGAGCTCGTCCACGGCGTTCTCCTCCGCGACGAGCTCGCGCTCGATGTCCCGGACGAGTTGTTCCGGCATTCGGGGGTTGGAGGCACCGTATATTTTGTGGATGACTCGACGGGCTTCGGGTTGCCTCTCCGCACGGACAAGCCAGCGCGGGGTTTCGGGAAGGAAGAGCAGGATGGAAAGCTGGATTATTCCAGGGAGGGCTCCGAGGCCGACCATCCACCGCCATCCCGCGTGGGTGGTTGAGAAGAGCCAGCCGATGGTGTAGGCGACTACCTGGCCACCAGTGACGAAGAGGCTTAGGATGGTTACCAATCTCCCGCGGATATCAGGTGGTGATAGTTCTGATATGTAC > 35 BDCG_02534 NA MFS_sugar_transporter EEQ87414.1 NA MRHLERFTDLGAASDRSSSELDNITTGTTNRKASHATANTTTPFPTQRQHSFLHSRRESLTAAERARRNLNAKLANPLAGLSHSTLMKRGGRYARQHQIGDEEDIRAFELGAVLAQAPEKYESVEGLTEKEMKVLREEFTNRWSQPRLMYLVIVLCSLSAAVQGMDESVVNGAQIFYKSQFGIGGLDSRSTWLVGLVNAAPYLCCAFIGCWLTVPFNHWFGRRGTVFITCVFSAIACFWQGFVNSWWHLFISRFALGFGIGPKSATVPIYAAETTPPAIRGALVMQWQMWTAFGIMLGYMSDLVFFNVHDTPSVTGLGWRLMLGSAMFPAMLAARDLFYMHTLLEAEATMKLGQAKILELITVPRNRRALIASEIVMFMQQFCGVNVIAYYSSEIFLDAGFSQKAALAASFGFGVINWLFAIPAVYTIDTFGRRNLLLVTFPLMGLFQLLTGFSFWIPTDGSETMRRAHTGCVALGIYLFGIVYSPGEGPVPFTYSAEAYPLYVRSHGMALATATTWFFNFILAITWPSLKNAFKPQGAFGWYAGWNIVGFVLVLLFMPETKGKTLEELDQVFSVPTMVHAKFGAGELVYYFRRYVLRQKGLKKVELYERDESGEKRRGMRRDRSESEGTGADPDAEIKVHVNGRGQELSDEGRLENG bitunicate_ascomycetes Ajellomyces_dermatitidis_ER-3 Ajellomyces_dermatitidis_ER-3 EQ999975 701021..701854 Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Klein,B.,_Goldman,B.,_Young,S.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Heiman,D.I.,_Hepburn,T.A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sykes,S.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:>834 Genome_Coverage:_9.43X_(8.35X_Q>20)Sequencing_Technology:_ABIAnnotation_was_added_to_the_scaffolds_in_June_2009. NA 09-JUN-2009 Ajellomyces_dermatitidis_ER-3_genomic_scaffold_supercont1.3,_whole_genome_shotgun_sequence. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_dermatitidis_C5GDT0_AJEDR.gb Ajellomyces 224021014 Unpublished fungi EQ999975 MFS_sugar_transporter NA Onygenales sac_fungi NA 834 NA genomic_DNA NA ER-3 NA Blastomycoides_dermatitidis NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 559297 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Blastomyces_dermatitidis_strain_ER-3 NA EQ999975.1 TCATCCATTCTCCAACCTCCCTTCATCACTCAACTCCTGACCCCTCCCATTGACATGAACTTTGATCTCAGCATCAGGATCAGCACCCGTGCCTTCGCTTTCACTTCGATCCCTCCTCATTCCCCTCCTCTTCTCCCCGCTTTCATCCCTCTCGTAAAGCTCCACCTTCTTCAGCCCTTTCTGCCGCAACACATACCTCCGGAAGTAGTAAACCAACTCCCCGGCCCCAAACTTCGCATGCACCATCGTCGGCACCGAAAACACCTGATCCAGCTCCTCAAGCGTCTTCCCCTTCGTCTCCGGCATGAACAATAACACAAGCACAAACCCCACAATATTCCACCCAGCATACCACCCAAACGCGCCCTGCGGTTTGAACGCATTCTTCAAACTCGGCCACGTAATCGCCAGGATGAAGTTGAAGAACCACGTCGTCGCCGTCGCCAGCGCCATGCCATGCGAACGCACGTAGAGCGGGTACGCTTCGGCAGAGTACGTGAAGGGAACAGGGCCTTCGCCCGGCGAATAGACGATGCCGAACAGGTAGATGCCCAACGCGACGCAGCCGGTGTGGGCCCTGCGCATGGTCTCGGAGCCGTCAGTGGGGATCCAGAAGGAAAAGCCGGTCAGCAGCTGGAAGAGGCCCATGAGAGGGAAAGTAACGAGGAGAAGGTTGCGACGGCCAAAGGTATCGATGGTGTAGACGGCGGGGATGGCGAAGAGCCAATTTATCACGCCGAAGCCGAACGAGGCTGCTAACGCGGCTTTCTGGGAGAAGCCTGCGTCTAGGAAAATTTCGGATGAGTAGTAGGCTATGACGTTTACACCGCAGAA > 36 BDCG_05030 NA sugar_transporter EEQ89910.1 NA MASLAGNIYLISAVAVIGGGLFGFDISSMSAIIGTQNYLCYFDQAEPGETKCKGPRADVQGGITASMAGGSWLGALVSGFLSDILGRKKSIMVGAIIWIIGSIITCAAQNIGMLIVGRIINGFSVGICSAQVPVYIAELAPPSKRGRLIGAQQWAITWGIMIMFYISYGSSKVDGPAGFRIAWGLQMIPAVLLFFGLIPLPESPRWLARKDRWEDCLAVLILVHGRGDPNSPFVQREYEEIKEMCEFERRNADVTYLELLKPNMINRTHVGVFTQIWSQLTAATFALFSTAGGFDELSVLLRYVFGMAGLTGDTLMVSSSIQYVINVLMTIPALLWVDRWGRRNTLLVGAFFMMVWLFTNAGLLASYGYPAPADRAVEAESWLISGPPSKAVIACSYLFVASFAPTWGPVSWIYPPELFPLRVRGKAVALSTSSNWAFNFALGYFVPPSFVSIQWKTYIIFAVFCAAMFVHVFFMFPETAGKTLEEVELIFTDPNGIKYIGTPAWKTRVDFHRAALLEKTGVKDEEKLATDFQHEESPKEGTV bitunicate_ascomycetes Ajellomyces_dermatitidis_ER-3 Ajellomyces_dermatitidis_ER-3 EQ999977 1741048..1741340 Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Klein,B.,_Goldman,B.,_Young,S.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Heiman,D.I.,_Hepburn,T.A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sykes,S.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:293 Genome_Coverage:_9.43X_(8.35X_Q>20)Sequencing_Technology:_ABIAnnotation_was_added_to_the_scaffolds_in_June_2009. NA 09-JUN-2009 Ajellomyces_dermatitidis_ER-3_genomic_scaffold_supercont1.5,_whole_genome_shotgun_sequence. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_dermatitidis_C5GKZ6_AJEDR.gb Ajellomyces 224021012 Unpublished fungi EQ999977 sugar_transporter NA Onygenales sac_fungi NA 293 NA genomic_DNA NA ER-3 NA Blastomycoides_dermatitidis NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 559297 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Blastomyces_dermatitidis_strain_ER-3 NA EQ999977.1 ATGGCTTCTCTCGCTGGCAATATCTACCTGATTTCCGCCGTGGCGGTGATTGGAGGTGGCTTGTTCGGTTTCGACATCTCGTCCATGTCTGCTATCATCGGCACCCAAAACTACCTTTGCTACTTCGACCAGGCAGAACCGGGTGAGACAAAATGCAAGGGCCCAAGGGCAGATGTCCAAGGCGGTATCACGGCCTCCATGGCTGGTGGCTCATGGCTGGGAGCGCTGGTATCGGGCTTTTTGTCTGATATCCTTGGTCGCAAGAAGTCCATCATGGTTGGCGCAATTATCTG > 37 BDCG_05669 NA MFS_monosaccharide_transporter EEQ90549.1 NA MPHFSREKEGNRRLSSSSLPPSDSDSDFSVWSDTGDLAEQLANEEDPLQIHLRHSLEHSAFGRSGFRSRGKRSKRVHYPTEEHPHGTHHHHHHHEGHGNGNSDSGLFKEIRIPTPAPRTISRVERILAVIMSPGAPRKARSNGLVGKPLLYLTSVFVSLGVFLFGYDQGVMSGIITGADFKDYFNQPTMAEIGTMVAILEIGAFISSLIVGKIGDIIGRTRTILYGSMVFFIGGAFQTCATGIPMMLLGRIIAGLGVGALSTIVPVYQSEISPPHNRGKLACIEFTGNICGYAASVWVDYFCSFIPNNWAWRLPLSLQCFMGALLGFGSLIICESPRWLLDTDRDEEGMVVIANLYGGGDLHNEKARQEYRDIKMGVLIQRQEGERTYADMFRRYRKRVFIAMSAQAFAQLNGINVISYYAPLVFESAGMMGRKAILMTGINSLSYLASTIPPWYLVDRWGRRPILLSGAVAMIISLSFISYWLYLDIKLTPVLTVVSVMVYNAAFGASWGPIPWLYPPEILPLSIRAKGASLSTASNWAFNWLVGEITPVLQETIKWRLYLMHAFFCACSFVLVYFVYPETSGIRLEDMDAIFGDGTAAPTPATPAERDALMGIGSPVPSLDIRRSPEGYPGAEHAIPGLDINPPESSNNNYKNNKSDRPSTGTVERSDRREGIGSWLASMIGRGRNSGNNGDQGRYSRLDQDEES bitunicate_ascomycetes Ajellomyces_dermatitidis_ER-3 Ajellomyces_dermatitidis_ER-3 EQ999978 108081..108087 Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Klein,B.,_Goldman,B.,_Young,S.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Heiman,D.I.,_Hepburn,T.A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sykes,S.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:7 Genome_Coverage:_9.43X_(8.35X_Q>20)Sequencing_Technology:_ABIAnnotation_was_added_to_the_scaffolds_in_June_2009. NA 09-JUN-2009 Ajellomyces_dermatitidis_ER-3_genomic_scaffold_supercont1.6,_whole_genome_shotgun_sequence. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_dermatitidis_C5GN96_AJEDR.gb Ajellomyces 224021011 Unpublished fungi EQ999978 MFS_monosaccharide_transporter NA Onygenales sac_fungi NA 7 NA genomic_DNA NA ER-3 NA Blastomycoides_dermatitidis NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 559297 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Blastomyces_dermatitidis_strain_ER-3 NA EQ999978.1 ATGCCCC > 38 BDBG_00712 NA MFS_alpha-glucoside_transporter XP_002629466.1 NA MTGPKNAGGVEPAAQNAGGASLGKSSMVTKSEIFESAKLAADKEQRMTLLQGLKLYPKAAAWSVLISTCIVMEGYDICLVNNFYAFPQWNEKYGVRYGNEYQVPAKWQAALSNGAVVGEIIGLFINGWASERFGYRYTILTCLLFLSGLITVFFTAQNVEALLVAEILCGIPWGVFQTLCITYATEVCPVALRSYLTTYINFCWGLGQFIGIGVLKALLSRPDEWSYRIPYALQWMWPLPLALAIFMAPESPWWLVRKGRTEEAKRALLRLTSLNRETDFDADETIAMIVHTTALEQKITSGASYLDCFRGVDLRRTEIVCMVWAIQNLSGNSFSNYSTYFLEQAGVSTVHSYSFAMGQYGINMIGVFGAWVLMSRGIGRRTLYMFGLCGLCVMLLVMGFLGLVPESNRNSGALATGSMMLVWALVYQLTVGTVCYSLVGELSSRRLQIKTVVLGRILYNIAAIFCNVLTPYMLNPSAWNWSNYAGFFWGGVCFCCIIYTYFRVPEPRGRSFAELDILFERGVSARRFPETVVDVFEEDVQAEVLAGYRRASVSHSIEPQDDEKPTHHAQTAL bitunicate_ascomycetes Ajellomyces_dermatitidis_SLH14081 Ajellomyces_dermatitidis_SLH14081 XM_002629420 1..1722 Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Klein,B.,_Goldman,B.,_Young,S.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Heiman,D.I.,_Hepburn,T.A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sykes,S.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1722 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003101682).COMPLETENESS:_incomplete_on_the_5_end. NA 09-OCT-2009 Ajellomyces_dermatitidis_SLH14081_MFS_alpha-glucoside_transporter,_mRNA. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_dermatitidis_C5JC47_AJEDS.gb Ajellomyces 261204504 Unpublished fungi XM_002629420 NA NA Onygenales sac_fungi NA 1722 NA mRNA NA SLH14081 NA Blastomycoides_dermatitidis NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 559298 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Blastomyces_dermatitidis_strain_SLH14081 NA XM_002629420.1 ATGACGGGCCCTAAGAACGCTGGTGGCGTCGAGCCGGCGGCTCAAAATGCGGGTGGCGCCAGCCTGGGCAAATCCTCCATGGTGACAAAGAGCGAGATATTTGAGAGTGCGAAATTGGCAGCTGACAAGGAGCAGCGGATGACCCTGCTACAGGGGCTGAAGCTCTACCCAAAAGCAGCTGCATGGAGTGTGCTCATCTCAACCTGCATTGTTATGGAAGGCTATGATATTTGTTTGGTGAACAATTTCTACGCTTTCCCTCAGTGGAACGAGAAATATGGAGTCCGATACGGGAATGAATACCAAGTCCCTGCCAAGTGGCAAGCAGCTCTTAGCAATGGTGCAGTCGTCGGTGAAATTATAGGGCTATTTATCAACGGCTGGGCTTCTGAACGCTTTGGTTACCGATATACGATTCTAACCTGTCTGTTGTTCCTTTCCGGGTTGATTACGGTATTCTTCACTGCACAGAATGTGGAGGCCTTGTTGGTAGCTGAGATCCTTTGTGGTATTCCATGGGGCGTTTTCCAGACCCTGTGCATCACCTACGCTACTGAAGTCTGTCCCGTTGCTCTGCGGAGCTATCTTACGACTTACATCAATTTCTGCTGGGGTCTTGGCCAATTCATTGGAATTGGAGTACTCAAAGCCCTGTTGAGCCGACCTGATGAATGGTCATACCGAATCCCGTACGCATTGCAATGGATGTGGCCCCTCCCATTGGCTCTGGCGATTTTCATGGCACCAGAATCTCCGTGGTGGTTGGTGAGAAAGGGCAGGACTGAGGAAGCAAAACGTGCCCTCCTTCGGCTAACGAGTTTGAATCGGGAAACGGACTTCGATGCCGACGAGACAATTGCAATGATTGTTCACACCACAGCATTAGAACAGAAAATTACCAGCGGTGCCAGCTATCTCGACTGTTTCAGGGGAGTTGACTTGCGCCGGACGGAAATTGTTTGTATGGTTTGGGCGATCCAGAATCTTAGCGGAAACTCATTCTCCAACTATTCTACATACTTCCTCGAACAGGCTGGTGTGTCGACTGTACATTCCTACTCCTTCGCCATGGGCCAATACGGAATCAACATGATAGGCGTGTTCGGTGCATGGGTTCTCATGTCTCGCGGCATTGGCCGAAGGACCCTTTACATGTTCGGTCTGTGCGGTCTCTGTGTCATGCTTTTGGTAATGGGATTCCTTGGCCTTGTTCCCGAGAGCAACCGCAACAGTGGCGCGCTGGCAACCGGATCCATGATGCTGGTCTGGGCTTTGGTCTACCAACTCACTGTCGGCACAGTCTGCTACTCTCTTGTGGGCGAACTTTCGAGCCGGCGTTTGCAGATCAAGACCGTCGTGCTGGGAAGGATTTTATACAACATAGCGGCTATCTTCTGCAACGTGTTGACTCCATACATGTTGAACCCAAGTGCGTGGAATTGGTCTAACTATGCGGGATTTTTCTGGGGTGGTGTGTGCTTCTGCTGTATCATTTACACGTATTTCCGTGTCCCGGAGCCGCGTGGCCGGTCCTTTGCAGAACTGGATATCCTGTTCGAGCGTGGCGTTTCTGCGAGGCGATTCCCTGAAACTGTAGTGGATGTTTTCGAAGAGGACGTACAGGCCGAAGTGCTCGCTGGTTATAGGAGAGCCTCAGTAAGCCACTCTATAGAACCACAGGACGACGAGAAACCGACACACCACGCTCAGACGGCGTTGTAA > 39 BDBG_01853 NA sugar_transporter XP_002627182.1 NA MFGKRFFGLRGRALNLAISSLGSLDFFLFGYDQGVTGGLLDLPSFNKYFPSIDPLDPLIKNDPAAQSQRSSNQGITVAAYNLGCFLGAILTIFIGNPLGRRRTIFTGCITMSIGALLQCTAYDLPHFIVGRIVTGIGNGINTSTVPTWQSETAKSHDRGKLIMIEGALITGGITFSYWVNYGFAWIGEHEVAWRFPLAFQITFAMIIFCSILNLPESPRWLVMKNRNEDALDILEALNQKPRDDPAIKAEFEAIEATVQEMSKGSYRSLFQMSEYREFHRVALAYVIQMYQQISGINLITYYAPQLYSQIGLVGSNLPKLLAACNGTEYFMASFIPIYIIEKVGRRPLMLFGAAGMSISMAVLAGANYRLTHLDDSRASITQAVFLFVFNTFFAIGWLGMTWLYPAEIVPLRIRAPTNALATSANWIFNFMVVMITPVAFDSIGYKTYVIFAVINAFIFPTVYFFFPETRYRSLEEMDSIFKKSTNVFNAVTNSVKEPYRYDKHGQLKPEYLEEAVRRKSTIGHTLPSVEHDGDTTPELKD bitunicate_ascomycetes Ajellomyces_dermatitidis_SLH14081 Ajellomyces_dermatitidis_SLH14081 XM_002627136 NA Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Klein,B.,_Goldman,B.,_Young,S.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Heiman,D.I.,_Hepburn,T.A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sykes,S.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1626 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003101680).COMPLETENESS:_incomplete_on_both_ends. NA 09-OCT-2009 Ajellomyces_dermatitidis_SLH14081_sugar_transporter,_mRNA. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_dermatitidis_C5JH74_AJEDS.gb Ajellomyces 261204889 Unpublished fungi XM_002627136 NA NA Onygenales sac_fungi NA 1626 NA mRNA NA SLH14081 NA Blastomycoides_dermatitidis NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 559298 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Blastomyces_dermatitidis_strain_SLH14081 NA XM_002627136.1 ATGTTTGGGAAGAGATTCTTTGGCCTCAGAGGCCGCGCCTTGAACTTGGCTATCAGTTCTCTTGGCAGTCTCGATTTCTTCCTCTTTGGATACGATCAGGGCGTAACGGGTGGTCTGCTAGATCTGCCGTCGTTCAACAAATACTTCCCTTCAATCGATCCTTTAGACCCGCTTATTAAAAATGACCCCGCTGCCCAATCGCAGCGCAGTTCGAACCAAGGCATTACCGTAGCAGCCTACAACTTGGGATGTTTCCTGGGAGCTATCCTCACCATCTTCATCGGAAACCCGCTAGGAAGGCGGAGAACCATCTTCACTGGCTGTATCACGATGTCTATCGGGGCCTTATTGCAATGCACGGCATATGATTTACCTCATTTCATCGTTGGTCGAATTGTCACAGGTATCGGTAACGGGATTAACACGAGTACTGTGCCAACTTGGCAATCGGAAACAGCAAAGTCTCATGATCGTGGCAAACTGATTATGATCGAGGGCGCGCTAATTACGGGAGGCATTACGTTCAGTTACTGGGTTAACTATGGCTTTGCATGGATTGGAGAGCACGAAGTGGCATGGCGATTTCCACTGGCCTTCCAGATTACATTTGCTATGATCATTTTCTGTTCCATTCTCAACTTGCCTGAATCTCCGCGATGGCTCGTCATGAAGAACCGGAATGAGGACGCACTCGACATTCTCGAGGCTCTTAATCAGAAACCTCGTGATGACCCCGCTATTAAAGCTGAGTTCGAAGCCATCGAAGCCACCGTCCAGGAAATGTCCAAGGGTTCATATAGAAGCCTCTTCCAAATGAGTGAATATCGTGAATTCCATCGAGTTGCACTTGCATACGTGATCCAGATGTATCAACAGATCTCTGGTATCAACCTTATCACATACTACGCGCCTCAACTATACAGTCAAATTGGTCTTGTCGGCAGCAATTTGCCAAAGTTGCTCGCTGCTTGTAATGGCACGGAATATTTCATGGCCTCCTTTATCCCTATCTACATCATTGAGAAAGTTGGACGTCGGCCACTCATGCTTTTCGGGGCCGCTGGCATGTCGATATCCATGGCAGTCCTTGCAGGTGCCAACTATCGGCTGACGCACTTAGATGATAGCAGAGCTAGTATCACACAGGCAGTCTTCCTTTTCGTATTCAACACCTTCTTCGCCATCGGCTGGCTTGGAATGACATGGCTGTATCCGGCAGAAATTGTGCCGCTCCGAATCCGTGCACCAACCAATGCACTGGCCACTAGTGCCAATTGGATCTTTAACTTCATGGTTGTCATGATTACTCCCGTGGCATTCGACAGCATCGGATACAAAACCTATGTTATCTTCGCTGTTATCAACGCATTTATCTTCCCCACTGTATACTTTTTCTTCCCCGAGACTCGCTATCGCTCCCTCGAAGAGATGGACAGTATCTTCAAGAAGTCTACGAACGTTTTCAATGCTGTCACCAACTCGGTCAAGGAGCCTTATCGCTACGACAAACACGGACAGCTCAAGCCTGAGTATCTTGAAGAGGCCGTCCGCCGCAAGAGCACCATCGGTCACACCCTTCCCTCAGTGGAGCATGACGGCGACACTACCCCTGAGCTCAAGGATTAA > 40 BDBG_02496 NA carboxylic_acid_transporter XP_002627825.1 NA MSGNQPADPFAKGILPTAKQALGDLFRWKMRVEVITAEGETYCEWQDPPRFRNPFSLCAQLAARDWLFFVVGLFAWCADAFDFHALSIQTVKLSRYYGETKTSISTAITLTLLLRSVGAAFFGLAGDKWGRKWPMVFNMAVLGFLQIATIYSATFHQFLAVRSLFGLFMGGVYGNAMAMALENCPVDARGLMSGVLQQGYSMGYVFAACANLGVGGSTESWKTVFWIGAGLSFLAGTIRVFLPESKQFREAKKAGKHKTSPGTFWRETKAMLLKERSMVVYCIILMTWFNYYSHTSQDSYTTFMLTQKGLNNAGASRASILMKVGACVGGTIIGYMSQFIGRRRTIIISALMSALLIPAWILPEGERNLSASGFFMQFFVQGAWGVIPIHLNELSPPAFRSSFPGVTYQLGNMISSPSAQIVNAIAEAITIRGSKGTPAPAYGPTMGVATAIIAIGIVITTMFGPEKRGRKFEQAKAAGAVERSAVDTDSTVDVKDTEAGNNGFEKEVGMEKGEKS bitunicate_ascomycetes Ajellomyces_dermatitidis_SLH14081 Ajellomyces_dermatitidis_SLH14081 XM_002627779 NA Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Klein,B.,_Goldman,B.,_Young,S.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Heiman,D.I.,_Hepburn,T.A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sykes,S.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1551 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003101680).COMPLETENESS:_incomplete_on_both_ends. NA 09-OCT-2009 Ajellomyces_dermatitidis_SLH14081_carboxylic_acid_transporter,_mRNA. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_dermatitidis_C5JJ53_AJEDS.gb Ajellomyces 261206175 Unpublished fungi XM_002627779 NA NA Onygenales sac_fungi NA 1551 NA mRNA NA SLH14081 NA Blastomycoides_dermatitidis NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 559298 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Blastomyces_dermatitidis_strain_SLH14081 NA XM_002627779.1 ATGTCAGGCAACCAGCCGGCCGACCCCTTCGCCAAGGGCATACTTCCTACCGCCAAGCAGGCCCTAGGCGACCTCTTCCGCTGGAAAATGCGTGTCGAGGTGATTACGGCCGAAGGCGAGACATACTGCGAATGGCAAGATCCACCACGCTTCCGAAACCCCTTCAGCCTCTGCGCCCAACTCGCTGCACGGGACTGGCTGTTCTTTGTCGTGGGTCTCTTCGCCTGGTGCGCCGACGCCTTCGATTTCCACGCCCTATCCATCCAGACCGTGAAGCTGTCCAGGTACTATGGCGAGACAAAAACTTCCATCTCCACCGCCATCACGCTCACGCTGCTGCTCCGGTCCGTCGGCGCGGCCTTTTTTGGCTTGGCGGGTGATAAGTGGGGGAGGAAATGGCCCATGGTCTTCAACATGGCTGTCTTGGGCTTTTTGCAGATAGCCACTATCTACAGCGCTACCTTTCATCAATTCCTAGCCGTGCGCAGTCTGTTCGGCCTCTTCATGGGCGGCGTCTATGGCAATGCTATGGCCATGGCGCTGGAGAATTGTCCCGTAGACGCCCGCGGGCTCATGTCCGGTGTCCTGCAACAGGGGTACTCGATGGGTTATGTCTTCGCAGCATGCGCCAACCTGGGCGTCGGCGGCTCGACGGAGTCATGGAAGACCGTCTTCTGGATCGGAGCAGGCCTCTCTTTCCTCGCTGGGACTATTCGCGTCTTCCTCCCGGAATCTAAACAGTTCCGTGAAGCGAAGAAGGCCGGGAAGCACAAAACGTCCCCAGGAACCTTCTGGCGCGAGACGAAGGCCATGCTCCTCAAGGAACGGAGCATGGTGGTCTACTGCATCATCTTGATGACCTGGTTCAACTACTACAGCCACACGTCGCAGGATAGCTATACAACTTTCATGCTCACCCAGAAGGGCCTGAATAACGCCGGAGCCAGCCGTGCCAGCATCCTGATGAAAGTAGGCGCCTGCGTCGGCGGCACCATCATCGGCTACATGTCCCAATTCATCGGCCGTCGGCGAACCATTATCATATCTGCGCTGATGAGCGCTCTGCTGATTCCCGCCTGGATCCTCCCGGAAGGCGAGCGGAACCTCTCCGCGTCCGGGTTCTTTATGCAATTCTTCGTACAAGGCGCGTGGGGGGTGATCCCCATCCATCTCAACGAGTTATCCCCGCCGGCATTCCGCTCCAGTTTCCCCGGCGTCACGTACCAGCTCGGAAACATGATCTCGTCGCCCTCGGCGCAGATTGTCAATGCGATTGCGGAGGCGATTACTATTCGAGGCTCGAAGGGGACACCGGCGCCGGCGTATGGGCCGACGATGGGTGTTGCGACGGCGATTATTGCGATAGGGATTGTTATTACGACTATGTTTGGGCCGGAGAAGAGGGGGAGGAAGTTTGAGCAGGCGAAGGCGGCTGGGGCTGTTGAAAGGTCGGCTGTGGATACGGATAGTACGGTTGACGTTAAAGATACTGAGGCTGGGAATAATGGGTTTGAGAAGGAGGTGGGGATGGAGAAAGGGGAGAAATCTTGA > 41 BDBG_07565 NA sugar_transporter XP_002622163.1 NA MESRAEGSSELIDKASYESPNKNLPAPGSQEVTLQDAHLPSLTTATLPSGSADPIYEAKAQLLNQAILDIGMGWYQWQLFIVIGFGWASDNLWPIVTSLIFTPVTNEFSPSRPPLLTLAQNLGLLVGAVFWGFGCDIYGRRWAFNLTIGITAVFGLVAAGSPNFAAIAVFAALWSVGVGGNLPVDSAIFLEFLPSTHQFLLTVLSIDWALAQVVANLIAWPLLGNLTCQEGDETCSRGENMGWRYFMITVGGISMLMFFIRFACFTIFESPKYLMGKGRDEDAVRVVHEVARRNGKTSSLTLEALTALGHGTTQRSGAGIALQRNLEKLDSNHVKSLFATPKLAWSTSLIILIWAFIGLGFPLYNAFLPYIQATRGANFGDGSTYITYRNSLIIAVLGVPGCLLGGALVELPRLGRKGTLSLSMMFTGVFLFASTTAESSNALLGWNCAYSFMSNIMYAVLYAYTPEIFLTKDRGTGNALTAAANRVFGVMAPIIALFADLETAVPVYVSGVLFIVASVLVMLLPFESRGKASL bitunicate_ascomycetes Ajellomyces_dermatitidis_SLH14081 Ajellomyces_dermatitidis_SLH14081 XM_002622117 NA Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Klein,B.,_Goldman,B.,_Young,S.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Heiman,D.I.,_Hepburn,T.A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sykes,S.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1605 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003101664).COMPLETENESS:_incomplete_on_both_ends. NA 09-OCT-2009 Ajellomyces_dermatitidis_SLH14081_sugar_transporter,_mRNA. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_dermatitidis_C5JYC1_AJEDS.gb Ajellomyces 261191509 Unpublished fungi XM_002622117 NA NA Onygenales sac_fungi NA 1605 NA mRNA NA SLH14081 NA Blastomycoides_dermatitidis NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 559298 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Blastomyces_dermatitidis_strain_SLH14081 NA XM_002622117.1 ATGGAGTCACGCGCAGAGGGCAGCTCGGAGCTCATAGATAAAGCTTCCTACGAGAGCCCTAACAAGAACTTGCCAGCGCCGGGATCCCAAGAAGTTACTCTCCAGGATGCCCATTTGCCCTCCTTGACCACGGCGACCTTGCCCTCAGGCAGCGCCGATCCCATCTACGAAGCAAAAGCCCAGCTGTTGAACCAGGCCATTCTCGACATCGGAATGGGATGGTATCAATGGCAGCTATTCATCGTCATTGGCTTCGGCTGGGCCAGCGATAACCTCTGGCCCATAGTTACCTCCCTCATCTTTACGCCTGTGACGAACGAGTTCTCACCCAGCCGCCCGCCGTTGCTTACCCTTGCGCAGAACCTGGGGCTTCTCGTTGGCGCGGTGTTCTGGGGGTTTGGCTGCGATATCTACGGCCGTCGCTGGGCGTTCAACCTCACCATCGGCATCACGGCGGTGTTTGGCCTCGTGGCTGCAGGCTCGCCGAACTTTGCGGCTATCGCGGTGTTTGCGGCGCTATGGTCTGTCGGGGTTGGCGGGAACCTACCTGTTGACTCTGCCATATTTCTCGAGTTCTTGCCGTCGACTCACCAGTTCTTGCTTACTGTTTTGTCTATCGATTGGGCTCTTGCGCAAGTCGTGGCGAATCTTATCGCCTGGCCGCTGCTGGGGAACTTGACCTGCCAGGAAGGCGATGAAACATGCAGCCGTGGTGAAAACATGGGATGGAGATATTTCATGATCACTGTCGGTGGGATTTCGATGCTTATGTTCTTCATCCGCTTTGCTTGCTTTACCATCTTTGAATCACCAAAGTATCTCATGGGCAAGGGGAGAGATGAAGACGCCGTCCGCGTTGTTCATGAGGTGGCGCGCCGGAATGGAAAGACATCATCACTCACTCTCGAAGCGCTGACGGCCCTGGGGCACGGCACCACACAGAGGAGCGGGGCTGGGATAGCCTTGCAGAGAAATCTAGAGAAACTCGACTCCAACCACGTCAAATCCCTCTTCGCAACCCCGAAACTAGCCTGGTCAACCTCCCTGATAATCCTCATCTGGGCCTTCATCGGGCTCGGTTTCCCTCTCTACAACGCCTTTTTACCCTACATCCAAGCCACCCGCGGCGCCAACTTCGGCGACGGCTCCACCTACATCACCTACCGCAACTCCCTCATCATCGCCGTCCTCGGCGTCCCAGGCTGCCTCCTCGGCGGCGCGCTGGTCGAGCTGCCCCGACTGGGCAGGAAGGGCACGCTCTCGCTCTCAATGATGTTCACGGGCGTGTTCCTCTTCGCGTCAACAACCGCGGAGAGCTCCAACGCGCTCCTGGGCTGGAACTGCGCGTACAGCTTCATGAGCAATATCATGTACGCGGTGCTGTATGCGTATACGCCAGAGATTTTCCTGACCAAGGATCGCGGGACGGGCAATGCGCTGACGGCGGCGGCGAATCGGGTCTTTGGCGTCATGGCGCCGATTATTGCCCTGTTTGCGGATCTGGAGACGGCGGTGCCTGTTTATGTGAGTGGAGTGTTGTTTATTGTTGCGAGTGTTTTGGTTATGTTGCTGCCGTTTGAATCGAGGGGGAAGGCTAGTTTGTAG > 42 BDBG_08146 NA MFS_maltose_permease_MalP XP_002621523.1 NA MVTVDKDDAEQQKRNITAGDSATEIIPEAQVATITERELDISTALRLYPKAAAWSFFFSLGVIMTGYDPQIIGNLYGVPRFQQDFGYLFKGKWIISAAWQSGLRTLIRPFLNMFFSMGSPIGQVVGALAATYPMECPAVGAVHVLYMYYTCIYACVVLTAGCVFIQFFARSLKVLIVGELLGGLILGSYAVIAPAYASEVCPVALRGVLTAYVNLCFVIGQFIANGVSAATHGLDSHWAYSSPFATQWFWPAVILAGVFSAPESPWWLVRKGRLQDAENSLRRLASSSVDVKPTLSMIIETDRLEQQMEAGTSFRDCFKKTNLRRTQIAIGVYSIQVFSGIYLIGYSNYFFTQAGLPPDDAFNMGVGFLGVGFLGCILSWVLLAYFGRRVIYSSGLAGLAVILLIIGILDCVPNYTERPAVIWAQASMMLVWNFTYDLSVGPVCFVILCECSATKLRSKTIAISTAIQAIFGIVMTVVIPYMINPDAGNIRGKLGFFFGIVGPCFYLFCMDLF bitunicate_ascomycetes Ajellomyces_dermatitidis_SLH14081 Ajellomyces_dermatitidis_SLH14081 XM_002621477 NA Champion,M.,_Cuomo,C.,_Ma,L.-J.,_Henn,M.R.,_Klein,B.,_Goldman,B.,_Young,S.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Heiman,D.I.,_Hepburn,T.A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sykes,S.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1542 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003101660).COMPLETENESS:_incomplete_on_both_ends. NA 09-OCT-2009 Ajellomyces_dermatitidis_SLH14081_MFS_maltose_permease_MalP,_mRNA. NA Ajellomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ajellomyces_dermatitidis_C5K002_AJEDS.gb Ajellomyces 261190225 Unpublished fungi XM_002621477 NA NA Onygenales sac_fungi NA 1542 NA mRNA NA SLH14081 NA Blastomycoides_dermatitidis NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 559298 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Ajellomycetaceae,_Ajellomyces The_Genome_Sequence_of_Blastomyces_dermatitidis_strain_SLH14081 NA XM_002621477.1 ATGGTTACTGTCGATAAGGATGACGCGGAGCAGCAAAAACGTAACATCACTGCTGGCGACTCTGCCACGGAGATCATACCGGAAGCTCAAGTTGCAACTATTACAGAACGCGAATTAGACATCAGCACCGCACTTAGGCTCTATCCTAAAGCAGCTGCGTGGTCTTTCTTTTTCTCCCTCGGTGTTATCATGACTGGCTATGACCCCCAGATCATAGGGAATCTATATGGTGTCCCCAGGTTCCAGCAGGATTTTGGCTATCTCTTCAAGGGGAAGTGGATAATTTCTGCTGCGTGGCAGTCAGGGCTCAGAACACTTATTCGACCCTTTTTAAACATGTTCTTTAGCATGGGAAGTCCTATCGGCCAAGTTGTAGGCGCCTTAGCCGCTACATATCCGATGGAATGCCCAGCTGTTGGTGCAGTGCATGTACTGTACATGTACTATACATGCATCTATGCATGCGTTGTCTTGACTGCTGGCTGTGTCTTCATCCAATTCTTCGCACGGTCGTTGAAAGTCCTGATCGTTGGCGAACTTCTTGGAGGCTTGATATTAGGATCATACGCAGTTATCGCCCCCGCCTACGCTTCGGAAGTATGCCCCGTTGCCCTGCGTGGTGTTCTGACGGCATATGTGAATCTCTGTTTTGTTATCGGCCAGTTCATCGCCAACGGGGTCTCCGCTGCGACTCACGGGCTAGATAGCCACTGGGCTTATAGTTCGCCCTTTGCGACCCAGTGGTTCTGGCCAGCCGTGATCCTTGCCGGGGTATTCTCTGCCCCTGAGAGTCCGTGGTGGCTCGTAAGGAAGGGAAGACTGCAAGACGCCGAAAATTCACTTCGGAGGCTCGCGTCATCGAGTGTTGATGTCAAACCAACCCTGTCAATGATTATCGAAACCGATCGTCTTGAGCAGCAGATGGAAGCAGGGACTTCTTTCCGTGATTGTTTCAAGAAAACCAACCTTCGTCGTACCCAAATCGCTATCGGCGTATATTCCATTCAAGTTTTCAGCGGCATTTATCTCATTGGATATTCCAACTACTTTTTCACACAGGCTGGTCTTCCTCCTGACGATGCATTCAATATGGGCGTCGGTTTTCTCGGGGTGGGATTTCTGGGATGCATTTTATCCTGGGTTCTCCTCGCATACTTCGGCCGCCGAGTGATCTACAGTAGTGGCCTAGCTGGGCTTGCGGTTATTCTATTAATCATCGGCATCCTGGACTGTGTGCCTAACTATACGGAACGTCCTGCGGTCATCTGGGCTCAGGCATCCATGATGCTGGTATGGAATTTCACGTACGACCTCTCTGTTGGACCGGTATGTTTCGTCATTCTTTGTGAATGTTCCGCAACCAAACTTCGCAGCAAGACTATTGCCATTTCAACAGCTATACAAGCTATCTTCGGCATAGTCATGACTGTCGTGATTCCTTATATGATAAATCCGGATGCAGGGAATATAAGAGGGAAACTAGGGTTCTTTTTTGGCATCGTAGGGCCTTGCTTCTATTTGTTTTGTATGGACCTATTTTAA > 43 AaLAA1DRAFT_0074 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_acr:Acry_1080_major_facilitator_superfamily_MFS_1 major_facilitator_superfamily_MFS_1 EED08723.1 11 MGTGVPISSAAGILARMERLTAWPLPRRLFLVIGLGYLFTFYDIFDVNVSFVQTATSIIPGATPADASRYIGLPIFANLLGYVVGTLVLSPLADRVGRRRMLMTTMFITGVGSLLTALAMRDWWFVLARGITGVGVAADLAVVNTYMSEVAPRRARAKYTSGLFMFSGVGALVGIWLGLWLTTPSAPFPQGLPFALASPSFNWGWRLMYYIGAVLALIALLLRLELPESPRWLAAKGRVEEAAAVVAAMEERLGLGAFQSDGTAASFSLVSDTRAPYGELFGSPVYRKRVFLLFFVWLFSYVTVYGFSAGMTTLLVGAGYAPSEAGLIVAVGVLGMLLAGVVAYLAGEVMERKTYLLVSAVLTILGGLVVGLAGHHLWLSYLGAILLFFGQNVWVPVFYAWTAENFPSRARTSGFALVDGAGHIGAGVGLWAIAPLIPSLGVTAGFVAMSGFLLIAAFIALGGIASRGKVLEEISP Bacillus/Lactobacillus/Streptococcus_group Alicyclobacillus_acidocaldarius_LAA1 Alicyclobacillus_acidocaldarius_LAA1 ACCS01000001 91235..92665 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Larimer,F.,_Land,M.L.,_Hauser,L._and_Mead,D. NA 0:1431 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4024130Source_DNA_and_Bacteria_available_from_David_Mead(dmead@lucigen.com)Contacts:_David_Mead_(dmead@lucigen.com)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376). NA 17-DEC-2008 Alicyclobacillus_acidocaldarius_LAA1_ctg1,_whole_genome_shotgun_sequence. NA Low_G+C_gram-positive_sulfur-oxidizing_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Alicyclobacillus_acidocaldarius_B7DM51_9BACL.gb Alicyclobacillus_Wisotzkey_et_al._1992_emend._Karavaiko_et_al._2005 218241476 Unpublished NA ACCS01000001 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1431 NA genomic_DNA NA LAA1 NA Bacillus_acidocaldarius_Darland_and_Brock_1971_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 543302 Bacteria,_Firmicutes,_Bacillales,_Alicyclobacillaceae,_Alicyclobacillus Sequencing_of_the_draft_genome_and_assembly_of_Alicyclobacillus_acidocaldarius_LAA1 NA ACCS01000001.1 ATGGGCACGGGTGTGCCTATTTCGAGCGCGGCGGGCATCTTGGCGCGGATGGAGCGGTTGACCGCATGGCCGCTTCCGCGGCGATTGTTCCTCGTCATCGGTCTCGGGTATCTGTTCACCTTCTACGACATATTCGACGTCAATGTGTCCTTTGTGCAGACCGCCACATCCATCATACCTGGTGCAACTCCGGCGGACGCCAGCCGGTACATCGGATTGCCCATCTTCGCCAACCTGTTGGGGTACGTGGTCGGCACGCTTGTGTTGAGCCCTCTTGCCGATCGCGTCGGGCGAAGGCGTATGCTGATGACCACCATGTTCATTACGGGGGTCGGCTCACTGTTGACGGCTCTCGCCATGCGCGACTGGTGGTTTGTTCTCGCCCGCGGGATCACGGGCGTGGGCGTTGCGGCAGATCTCGCCGTGGTGAACACCTACATGAGCGAGGTCGCGCCGAGAAGAGCGAGGGCGAAATACACCTCTGGGTTGTTCATGTTCTCGGGCGTCGGAGCGCTTGTGGGCATCTGGCTGGGCTTGTGGTTGACGACGCCTAGCGCGCCGTTTCCACAAGGACTTCCGTTTGCGCTTGCATCTCCGTCGTTCAACTGGGGCTGGCGCTTGATGTACTACATCGGGGCGGTGCTCGCGCTCATCGCACTCCTGCTGCGGCTTGAGCTCCCTGAGTCTCCTCGCTGGCTGGCCGCGAAGGGGCGAGTCGAAGAAGCTGCGGCTGTCGTAGCTGCTATGGAGGAGCGCCTGGGCTTGGGCGCGTTCCAATCCGATGGAACCGCCGCATCGTTCTCGCTGGTCTCCGACACGCGCGCGCCGTATGGCGAACTGTTTGGTAGTCCGGTGTATCGCAAGCGAGTCTTCCTACTGTTTTTCGTCTGGCTCTTTAGCTATGTGACCGTGTACGGATTTTCTGCAGGGATGACCACGCTGCTCGTGGGCGCAGGCTATGCGCCGAGTGAGGCGGGGCTCATCGTGGCCGTCGGCGTCTTGGGCATGCTGCTGGCCGGCGTCGTGGCGTACCTTGCGGGAGAAGTCATGGAACGCAAAACCTATCTGCTCGTGTCTGCGGTCCTGACCATCCTGGGAGGACTCGTGGTGGGGCTTGCTGGACACCATCTGTGGCTTTCGTACCTCGGTGCAATCCTCCTCTTCTTCGGGCAAAACGTGTGGGTGCCGGTGTTTTACGCCTGGACTGCGGAAAACTTTCCATCTCGCGCGAGGACCAGCGGTTTCGCCCTCGTGGATGGAGCGGGACACATCGGCGCCGGAGTTGGTTTGTGGGCCATCGCGCCGTTGATTCCCTCTCTCGGCGTGACCGCCGGATTTGTGGCGATGTCAGGCTTCCTTCTGATCGCGGCGTTCATCGCCCTTGGAGGGATTGCGTCTCGAGGCAAAGTTTTGGAGGAGATTTCGCCGTAG > 44 NA NA putative_major_facilitator_transporter ACI62425.1 11 DRLPITPRVVGIIALLSLVWLAEAFDIGIVGPVLTTLEKAWHLTSWQTGLLAIASTIGIVLGMMPAGMMADRFGRRRVILMGIGWFSMVTMLGALARNVAALFLVRLVAGIGEGAVLPMPYLILSEFTNYRRRAVSVGYANGILTAAYVVPSLVSVWALHHYAQDVAWRVPFLLGGVPLLMLIPIALWLPESPRYLLDKGRQAPVARLVEALEQEAALPHDESLYDEVIAETLDETPHDMLRTLRSIFRPPLLARSAMVILHLTAALIXFYILQVFGPALLAKRXXGXSNXILDTGLXMLIAXXGSVCQGYLSDRFGRKRVLALYAALATVGCLLFAWVHTREATLAAGFLTAFFGLGIFPVSKLSVAEQYPTEVRGRGVYVAEMIARGMSGIVTTYFIPFVLSVGGDRVVFLGIAVVLVAFTAPFVAFGRETAQLQLEYATSVLPLKRVRPRLSRH Bacillus/Lactobacillus/Streptococcus_group Alicyclobacillus_acidocaldarius Alicyclobacillus_acidocaldarius EU722292 1..1375 Yuan,T._and_Yao,B. NA <0:1375 NA NA 01-JUN-2009 Alicyclobacillus_acidocaldarius_strain_ATCC_27009_putative_major_facilitator_transporter_gene,_partial_cds;_xylisomerase_(xyl)_gene,_complete_cds;_and_putative_xylulokinase_gene,_partial_cds. NA Low_G+C_gram-positive_sulfur-oxidizing_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Alicyclobacillus_acidocaldarius_C5H4P6_9BACL.gb Alicyclobacillus_Wisotzkey_et_al._1992_emend._Karavaiko_et_al._2005 209553780 Unpublished NA EU722292 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1375 NA genomic_DNA NA ATCC_27009 NA Bacillus_acidocaldarius_Darland_and_Brock_1971_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 405212 Bacteria,_Firmicutes,_Bacillales,_Alicyclobacillaceae,_Alicyclobacillus Cloning_of_a_xylose_isomerase_gene_from_Alicylobacillus_acidocaldarius NA EU722292.1 GGATCGCCTGCCGATCACGCCGCGCGTGGTGGGGATCATCGCGCTCCTATCGCTCGTGTGGCTGGCGGAGGCGTTCGACATCGGCATCGTGGGGCCGGTGCTCACCACGCTCGAAAAGGCGTGGCACCTGACTTCTTGGCAGACGGGGCTTTTGGCCATCGCCTCCACCATCGGCATCGTGCTCGGCATGATGCCCGCGGGCATGATGGCGGATCGATTCGGGAGACGGCGCGTCATCCTGATGGGCATCGGGTGGTTTTCGATGGTCACGATGCTCGGCGCGCTCGCGCGGAATGTGGCGGCCCTCTTTCTCGTGCGGCTCGTGGCGGGCATCGGCGAAGGTGCGGTGTTGCCCATGCCGTATCTCATCCTGTCCGAATTCACGAATTACCGGCGGCGGGCCGTCAGCGTGGGGTACGCCAACGGGATCCTGACCGCTGCGTATGTCGTCCCGAGCCTCGTGTCGGTCTGGGCACTTCATCACTACGCCCAGGACGTGGCGTGGCGCGTCCCGTTTCTTCTCGGCGGCGTGCCGCTTCTGATGCTGATCCCGATTGCCCTTTGGCTCCCGGAGTCGCCGCGATACCTGCTCGATAAAGGTCGACAAGCCCCGGTGGCCCGCCTCGTCGAGGCCCTGGAGCAGGAGGCGGCGTTGCCGCACGACGAATCGCTGTATGACGAGGTGATCGCGGAGACGCTGGACGAGACGCCGCACGACATGCTGAGGACGCTTCGATCCATCTTCCGGCCACCGCTTTTGGCTCGCAGCGCGATGGTCATCCTCCATCTCACGGCTGCCCTCATTCSGTTCTACATCCTGCAGGTGTTCGGGCCGGCGCTCTTGGCGAAACGGRGCYTMGGCGSGTCWAACTYCATTCTGGACACGGGCCTGATKATGCTCATCGCWRGCSTCGGCTCGGTCTGYCAAGGGTACCTGTCAGATCGGTTTGGGCGGAAACGGGTGCTCGCTCTGTATGCCGCGCTCGCGACGGTCGGCTGTCTGCTCTTTGCCTGGGTGCACACCCGCGAGGCGACTCTGGCGGCTGGGTTTCTCACCGCCTTCTTCGGGCTCGGGATCTTCCCCGTGTCGAAGTTGTCCGTCGCCGAGCAATACCCGACCGAGGTCCGGGGGCGAGGCGTGTACGTGGCGGAGATGATCGCACGTGGGATGAGCGGCATCGTCACCACCTATTTCATCCCGTTTGTGCTCTCGGTGGGTGGCGATCGCGTCGTGTTTCTGGGGATTGCGGTTGTGCTGGTCGCCTTCACGGCTCCGTTTGTGGCGTTTGGGCGAGAGACCGCCCAATTGCAGTTGGAATACGCGACGAGTGTCCTACCGCTCAAGCGGGTTCGGCCTAGGCTGTCGCGGCACTGA > 45 Aaci_0792 PFAM:_major_facilitator_superfamily_MFS_1;_General_substrate_transporter;_KEGG:_bam:Bamb_1604_major_facilitator_transporter major_facilitator_superfamily_protein YP_003184224.1 11 MSTPMVAARLNQMPLTRWHKRIAVIVGISLFFDLFDIYLSGVLGTVLTSAFHIPKSEQALLLSSAFLGMFVGSIGFNALADHVGRKAAFLGILSTYSVFTFIAAFSPNATFLIVFRFLAGLGIGALLPLCDVYLSEIFPAHNRGRIMAWTYTLEFCATPVEGFLARALVTTHFLMAGWRWLFVIGSLGAIIVWSLQRILPESPRWLESVGRHQEAEQILARFLEEAPREPGNETPVTDAVEPKRVPLNTLFTPTYAKRTIMLWIFQILQTFGYYGFGTLVPLVLASKGLTITTSLTYAAVSFIGYPIGSLLSVPIVERIERKWIVVGAAFCMAVFGILFGMTTQPTLIMLFGFLYTLSSNIFSNGYHIFQAEIYPTAVRATAVGTAYSLSRLMSGLMPFILLPVLHAHGATAMFSVVAGAMVLLMIDVGALGPKTTGRSLEDVNERVIVQEQGPNIGV Bacillus/Lactobacillus/Streptococcus_group Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 NC_013205 863178..864554 Mavromatis,K.,_Sikorski,J.,_Lapidus,A.,_Glavina_Del_Rio,T.,_Copeland,A.,_Tice,H.,_Cheng,J.F.,_Lucas,S.,_Chen,F.,_Nolan,M.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Ivanova,N.,_Ovchinnikova,G.,_Pati,A.,_Chen,A.,_Palaniappan,K.,_Land,M.,_Hauser,L.,_Chang,Y.J.,_Jeffries,C.D.,_Chain,P.,_Meincke,L.,_Sims,D.,_Chertkov,O.,_Han,C.,_Brettin,T.,_Detter,J.C.,_Wahrenburg,C.,_Rohde,M.,_Pukall,R.,_Goker,M.,_Bristow,J.,_Eisen,J.A.,_Markowitz,V.,_Hugenholtz,P.,_Klenk,H.P._and_Kyrpides,N.C. NA 0:1377 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001727.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4083332Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_Cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Alicyclobacillus_acidocaldarius_acidocaldarius_104-IA,_DSM_446Culture_Collection_ID_::_DSM_446,_ATCC_27009GOLD_Stamp_ID_::_Gi02324Funding_Program_::_DOE-GEBA_2007Gene_Calling_Method_::_GeneMarkIsolation_Site_::_"Yellowstone_National_Park,_acid_hot_spring"Isolation_Country_::_USALatitude_::_44.376262Longitude_::_-110.690383Oxygen_Requirement_::_AerobeCell_Shape_::_Rod-shapedSporulation_::_SporulatingTemperature_Range_::_ThermophileTemperature_Optimum_::_60CpH_::_3_-_4Gram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NonePhenotypes_::_ThermoacidophileEnergy_Source_::_Chemoorganotroph##Metadata-END##COMPLETENESS:_full_length. NA 27-JAN-2012 Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446_chromosome,_complete_genome. NA Low_G+C_gram-positive_sulfur-oxidizing_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Alicyclobacillus_acidocaldarius_C8WU72_ALIAD.gb Alicyclobacillus_Wisotzkey_et_al._1992_emend._Karavaiko_et_al._2005 258510020 Stand_Genomic_Sci_2_(1),_9-18_(2010) NA NC_013205 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 21304673 1377 NA genomic_DNA NA DSM_446 NA Bacillus_acidocaldarius_Darland_and_Brock_1971_(Approved_Lists_1980) NA complement NA NA NA NA NA NA Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_(Darland_and_Brock_1971)_Wisotzkey_et_al._1992 NA NA NA prokaryotes NA 521098 Bacteria,_Firmicutes,_Bacillales,_Alicyclobacillaceae,_Alicyclobacillus Complete_genome_sequence_of_Alicyclobacillus_acidocaldarius_type_strain_(104-IA) NA NC_013205.1 TCACACCCCGATGTTCGGCCCTTGCTCCTGCACGATCACGCGCTCGTTGACATCCTCTAGCGACCTTCCAGTCGTCTTCGGGCCAAGCGCCCCCACGTCGATCATCAAAAGCACCATGGCGCCGGCCACGACCGAGAACATCGCCGTGGCCCCGTGGGCGTGCAGCACGGGCAACAGGATGAACGGCATCAGGCCGCTCATCAGGCGGCTTAAGCTGTAAGCCGTGCCGACAGCCGTGGCCCGAACGGCGGTCGGGTAAATCTCGGCCTGAAAGATGTGGTAACCGTTGGAGAAGATGTTGCTCGACAGTGTGTAGAGAAATCCGAACAGCATGATCAATGTAGGTTGGGTCGTCATGCCGAAGAGAATGCCGAATACGGCCATGCAAAACGCGGCCCCCACGACAATCCATTTGCGCTCGATGCGTTCCACGATGGGGACCGAGAGCAGAGAGCCGATGGGATAGCCGATGAAGCTCACCGCGGCGTAGGTGAGCGACGTGGTGATGGTCAAGCCCTTGCTCGCCAAGACCAGCGGAACCAACGTGCCGAAGCCGTAGTAGCCGAAGGTTTGGAGGATTTGAAAAATCCAAAGCATGATGGTTCGCTTCGCGTACGTCGGCGTGAACAACGTGTTAAGCGGCACGCGCTTGGGTTCCACGGCGTCGGTGACAGGCGTTTCGTTCCCCGGTTCGCGCGGTGCCTCTTCCAAGAATCGAGCGAGGATTTGTTCCGCTTCCTGATGTCTGCCCACCGATTCCAGCCAGCGAGGCGATTCGGGCAGGATTCGCTGCAGCGACCACACGATGATGGCGCCGAGGGATCCAATGACAAACAGCCAGCGCCAGCCCGCCATGAGGAAGTGGGTGGTCACAAGGGCACGTGCCAAAAATCCCTCCACCGGCGTCGCACAAAACTCGAGCGTGTACGTCCAGGCCATGATCCTGCCGCGGTTGTGCGCGGGGAAAATTTCGCTCAGGTACACGTCACAAAGCGGCAACAGCGCACCGATGCCAAGTCCGGCGAGAAACCGGAAGACAATCAGAAAGGTCGCGTTGGGGCTGAAGGCCGCGATGAAGGTGAACACGGAATAGGTCGACAGGATGCCGAGAAAGGCGGCCTTGCGCCCGACGTGATCGGCCAGTGCGTTGAACCCGATGCTGCCGACGAACATGCCGAGAAATGCGGATGAGAGCAGAAGGGCCTGTTCCGACTTGGGAATGTGGAATGCGCTGGTCAGCACCGTGCCGAGCACGCCGGAGAGGTAAATGTCGAACAGGTCGAAGAACAGGCTGATGCCGACGATCACGGCGATGCGCTTGTGCCACCGCGTGAGGGGCATTTGGTTGAGGCGAGCTGCCACCATGGGTGTAGACAC > 46 Aaci_2879 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_cbd:CBUD_0727_phosphate_transporter general_substrate_transporter YP_003186272.1 11 MSVNPKVLEAMDESRLNGFHWKTMFTAGMGFFTDAYDLFIIGTVTAILTPLWHLSTAQLSILNSTSLAAAALGALFFGKLMDKLGRKAMYGFEVIMLAVGAILSACAPSFIWLVIFRFIVGLGVGGDYPTSSVIMTEYSNRKNRGFMVTMVFAMQGLGLLAGPLVASILLSAGIPHDIAWRIMLALGAIPAASVIYLRRKMPESPRYLMAVKQDADAAASAARELTGEAVRASAEAAPRAVIAKQSLWTPKHLLRLLGTAGSWFLIDVAFYGNSVSSQLILKALLPHAQLVTTTLVATAIFMVAALPGYFVAANLMDKWGRKFIQSLGFVVMAAAYAALFLVPSIAKMPILFLLLYAVSYFFIEFGPNTTTFLVPSEAFPTNLRGTAHGISAAAGKIGAFLGAFVLPGILKAAGLSVTMGMLAGVALLGALLTLLAVPEMKQRSLEDTEEIQVSPQATTHHSIVG Bacillus/Lactobacillus/Streptococcus_group Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 NC_013205 2941410..2942807 Mavromatis,K.,_Sikorski,J.,_Lapidus,A.,_Glavina_Del_Rio,T.,_Copeland,A.,_Tice,H.,_Cheng,J.F.,_Lucas,S.,_Chen,F.,_Nolan,M.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Ivanova,N.,_Ovchinnikova,G.,_Pati,A.,_Chen,A.,_Palaniappan,K.,_Land,M.,_Hauser,L.,_Chang,Y.J.,_Jeffries,C.D.,_Chain,P.,_Meincke,L.,_Sims,D.,_Chertkov,O.,_Han,C.,_Brettin,T.,_Detter,J.C.,_Wahrenburg,C.,_Rohde,M.,_Pukall,R.,_Goker,M.,_Bristow,J.,_Eisen,J.A.,_Markowitz,V.,_Hugenholtz,P.,_Klenk,H.P._and_Kyrpides,N.C. NA 0:1398 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001727.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4083332Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_Cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Alicyclobacillus_acidocaldarius_acidocaldarius_104-IA,_DSM_446Culture_Collection_ID_::_DSM_446,_ATCC_27009GOLD_Stamp_ID_::_Gi02324Funding_Program_::_DOE-GEBA_2007Gene_Calling_Method_::_GeneMarkIsolation_Site_::_"Yellowstone_National_Park,_acid_hot_spring"Isolation_Country_::_USALatitude_::_44.376262Longitude_::_-110.690383Oxygen_Requirement_::_AerobeCell_Shape_::_Rod-shapedSporulation_::_SporulatingTemperature_Range_::_ThermophileTemperature_Optimum_::_60CpH_::_3_-_4Gram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NonePhenotypes_::_ThermoacidophileEnergy_Source_::_Chemoorganotroph##Metadata-END##COMPLETENESS:_full_length. NA 27-JAN-2012 Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446_chromosome,_complete_genome. NA Low_G+C_gram-positive_sulfur-oxidizing_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Alicyclobacillus_acidocaldarius_C8WUR7_ALIAD.gb Alicyclobacillus_Wisotzkey_et_al._1992_emend._Karavaiko_et_al._2005 258510020 Stand_Genomic_Sci_2_(1),_9-18_(2010) NA NC_013205 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 21304673 1398 NA genomic_DNA NA DSM_446 NA Bacillus_acidocaldarius_Darland_and_Brock_1971_(Approved_Lists_1980) NA complement NA NA NA NA NA NA Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_(Darland_and_Brock_1971)_Wisotzkey_et_al._1992 NA NA NA prokaryotes NA 521098 Bacteria,_Firmicutes,_Bacillales,_Alicyclobacillaceae,_Alicyclobacillus Complete_genome_sequence_of_Alicyclobacillus_acidocaldarius_type_strain_(104-IA) NA NC_013205.1 TCAGCCGACAATGCTGTGATGCGTCGTGGCTTGCGGCGACACCTGGATCTCCTCGGTGTCCTCGAGGGATCTCTGCTTCATCTCGGGAACCGCAAGGAGGGTGAGCAGCGCCCCGAGCAGCGCCACGCCCGCCAGCATGCCCATGGTGACACTCAAGCCCGCGGCTTTGAGGATACCCGGCAGCACGAACGCGCCGAGGAACGCGCCAATCTTGCCAGCCGCCGCCGAGATCCCGTGCGCGGTGCCGCGCAGATTCGTCGGGAACGCTTCGGACGGCACGAGGAACGTCGTCGTATTCGGGCCGAATTCGATGAAGAAGTAGCTCACCGCGTACAGCAGCAGGAACAGAATGGGCATCTTCGCGATGCTCGGCACCAGGAACAGCGCCGCATATGCGGCCGCCATCACCACGAAGCCGAGGCTCTGAATGAATTTGCGCCCCCACTTGTCCATCAGGTTGGCCGCAACGAAATAGCCCGGCAGCGCAGCCACCATGAAGATGGCCGTTGCGACAAGCGTCGTGGTGACGAGCTGCGCGTGCGGCAGGAGCGCCTTCAGGATGAGCTGCGACGAGACGCTGTTCCCATAGAACGCGACGTCGATGAGGAACCAGCTGCCTGCCGTCCCGAGCAAGCGGAGGAGGTGCTTCGGCGTCCACAGCGACTGCTTGGCGATCACGGCGCGCGGAGCGGCCTCCGCCGAGGCGCGCACGGCCTCGCCCGTCAGTTCCCGGGCCGCGCTCGCCGCCGCGTCCGCGTCCTGCTTCACGGCCATGAGATAGCGCGGCGACTCGGGCATCTTGCGGCGCAGGTAAATCACAGAAGCCGCCGGAATGGCGCCGAGCGCGAGCATGATGCGCCACGCAATGTCATGCGGGATGCCCGCGGAGAGCAGGATGGACGCGACGAGCGGACCTGCCAAAAGCCCGAGCCCCTGCATGGCAAAGACCATCGTGACCATGAAGCCGCGATTTTTGCGATTGGAGTACTCCGTCATGATGACCGAACTGGTGGGATAATCGCCGCCCACGCCAAGTCCGACGATGAAGCGGAAGATGACGAGCCAGATGAAGGACGGCGCGCAGGCCGAGAGAATGGCGCCCACAGCGAGCATGATGACCTCAAATCCGTACATGGCCTTGCGCCCGAGCTTATCCATCAGTTTGCCGAAGAACAGGGCACCGAGCGCCGCCGCCGCGAGCGACGTGCTATTCAAAATGGAGAGTTGCGCGGTGGAAAGATGCCAGAGGGGTGTGAGGATGGCCGTAACCGTGCCGATGATGAAGAGATCGTAGGCGTCGGTGAAAAAGCCCATGCCAGCCGTGAACATCGTCTTCCAGTGGAAGCCATTCAGCCGACTTTCGTCCATGGCCTCGAGAACTTTCGGATTGACGGACAC > 47 Adeh_3698 NA major_facilitator_superfamily_transporter YP_466901.1 11 MSVSSASPVRPVPPDSGARAGITREEKMVIFASSLGTVFEWYDFYLYGSLAAIISKQFFAGVDERTGFIFALLAFAAGFAVRPFGAVVFGRLGDMIGRKHTFLLTILIMGGSTAIVGMLPSYATIGVLAPIILISMRMLQGLALGGEYGGAATYVAEHAPPGRRGNFTSWIQTTATLGLFLSLLIILGTRIGLGNEAFEKWGWRVPFLLSLILLGISVYIRLQLNESPVFKRMKEEGKASKAPLTESFLRWNNLKIVLMVLFGGVAGQAVVWYTGQFYALFFLQQTLKVDPTASNYMIAASLIIGTPFFIVFGTLSDKIGRKRIIMAGCVLAALTYFPIFKGITKYANPALEHAQATNPVTVVADPKDCSFQFDPIGKAKFTKSCDVAKASLAKKGVPYRNEEAPAGTVATIKIGEVSVASFAGNTLSPADFKTQNAAFEKALGGAITTAGYPAKADMNQVNYVMVVLLLTILVIYVTMVYAPIAAWLVELFPARIRYTSMSLPYHIGNGWFGGFLPTISFAMVAASGDIYYGLWYPIVIALITAVLGTLFMPETKDRDINHE delta_subgroup Anaeromyxobacter_dehalogenans_2CP-C Anaeromyxobacter_dehalogenans_2CP-C NC_007760 4236050..4237741 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Brettin,T.,_Bruce,D.,_Han,C.,_Tapia,R.,_Gilna,P.,_Kiss,H.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Kyrpides,N.,_Anderson,I.,_Sanford,R.A.,_Ritalahti,K.M.,_Thomas,H.S.,_Kirby,J.R.,_Zhulin,I.B.,_Loeffler,F.E._and_Richardson,P. NA 0:1692 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000251.URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Frank_Loeffler(frank.loeffler@ce.gatech.edu)Contact:_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 22-JAN-2012 Anaeromyxobacter_dehalogenans_2CP-C_chromosome,_complete_genome. NA Myxococcaceae_Jahn_1924 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Anaeromyxobacter_dehalogenans_Q2IFV6_ANADE.gb Anaeromyxobacter_Sanford_et_al._2002 86156430 Unpublished NA NC_007760 NA NA fruiting_gliding_bacteria purple_photosynthetic_bacteria_and_relatives NA 1692 NA genomic_DNA NA 2CP-C NA Anaeromyxobacter_dehalogenans_Sanford_et_al._2002 NA forward NA NA NA NA Cystobacterineae_Reichenbach_2007 not_Thiobacteria_Cavalier-Smith_2002 NA NA NA NA prokaryotes NA 290397 Bacteria,_Proteobacteria,_Deltaproteobacteria,_Myxococcales,_Cystobacterineae,_Myxococcaceae,_Anaeromyxobacter Complete_sequence_of_Anaeromyxobacter_dehalogenans_2CP-C NA NC_007760.1 ATGTCCGTGTCGTCGGCATCCCCTGTCCGACCTGTCCCCCCCGATTCCGGCGCACGCGCCGGCATCACCCGCGAAGAGAAGATGGTCATCTTCGCGTCGTCCCTCGGCACCGTCTTCGAGTGGTACGACTTCTACCTGTACGGCTCGCTCGCGGCGATCATCAGCAAGCAGTTCTTCGCAGGCGTGGACGAGCGCACCGGCTTCATCTTCGCGCTCCTCGCCTTCGCCGCCGGCTTCGCCGTGCGGCCCTTCGGCGCGGTGGTGTTCGGCCGGCTCGGCGACATGATCGGCCGGAAGCACACCTTCCTGCTCACCATCCTCATCATGGGCGGCTCGACGGCAATCGTCGGCATGCTCCCCAGCTACGCCACCATCGGCGTGCTGGCGCCCATCATCCTCATCTCCATGCGCATGCTGCAGGGCCTCGCGCTCGGCGGTGAGTACGGCGGCGCGGCCACCTACGTCGCCGAGCACGCGCCCCCGGGCCGGCGCGGCAACTTCACGAGCTGGATCCAGACCACCGCCACCCTCGGCCTGTTCCTCTCGCTCCTCATCATCCTCGGCACCCGCATCGGCCTGGGCAACGAGGCGTTCGAGAAGTGGGGCTGGCGCGTCCCGTTCCTGCTCTCGCTCATCCTGCTCGGCATCTCCGTCTACATCCGCCTCCAGCTGAACGAGTCGCCGGTGTTCAAGCGGATGAAGGAGGAGGGCAAGGCCTCGAAGGCCCCGCTCACCGAGTCCTTCCTGCGCTGGAACAACCTGAAGATCGTCCTGATGGTGCTGTTCGGCGGCGTCGCCGGCCAGGCGGTGGTCTGGTACACGGGCCAGTTCTACGCGCTGTTCTTCCTCCAGCAGACGCTGAAGGTGGACCCGACCGCGTCGAACTACATGATCGCGGCCTCGCTGATCATCGGCACACCGTTCTTCATCGTGTTCGGCACGCTCTCGGACAAGATCGGCCGCAAGCGGATCATCATGGCGGGCTGCGTGCTCGCCGCGCTGACCTACTTCCCCATCTTCAAGGGCATCACGAAGTACGCGAACCCGGCGCTGGAGCACGCGCAGGCGACGAACCCCGTGACGGTGGTCGCCGATCCCAAGGACTGCAGCTTCCAGTTCGACCCGATCGGCAAGGCCAAGTTCACGAAGTCCTGCGACGTCGCCAAGGCCTCGCTCGCGAAGAAGGGCGTGCCGTACCGCAACGAGGAGGCGCCCGCGGGCACCGTCGCCACCATCAAGATCGGCGAGGTGTCGGTCGCGAGCTTCGCCGGCAACACGCTCTCGCCGGCCGACTTCAAGACGCAGAACGCCGCGTTCGAGAAGGCGCTCGGCGGCGCCATCACGACCGCCGGGTACCCCGCCAAGGCGGACATGAACCAGGTGAACTACGTGATGGTCGTGCTGCTCCTGACCATCCTGGTCATCTACGTGACCATGGTGTACGCGCCGATCGCGGCGTGGCTGGTCGAGCTCTTCCCGGCTCGCATCCGCTACACCTCGATGTCGCTGCCGTACCACATCGGCAACGGCTGGTTCGGCGGCTTCCTGCCGACCATCTCGTTCGCGATGGTCGCCGCCAGCGGCGACATCTACTACGGCCTCTGGTACCCCATCGTCATCGCGCTCATCACCGCGGTCCTCGGCACCCTCTTCATGCCCGAGACCAAGGATCGCGACATCAACCACGAGTAG > 48 AMF_304 High_sequence_identity_to_AMF_303_and_AMF_309_Higher_sequence_similarity_to_other_Anaplasmataceae_than_AMF_303,_lower_than_AMF_309;_psort:_bacterial_inner_membrane_---_Certainty=_0.554(Affirmative);_COG0477_ProP_Permeases_of_the_major_facilitator_superfamily proline/betaine_transporter YP_002563431.1 11 MYKLWKRITGLNEVVLAVLLCTAIENYDFTVYGMLSSVIAQVFFSEGAFLFDQGEGSTYLSTLMGFLVFASAFVARPLGATMFGYLGDRKGRRLALNISAGMLVGSVFFMSVLPTPTTWSLSPIVLIVLRIIQGLSYGAEIGGVVLMAESVGRDQVKVVWVIRIILCSVGILVGTFVLRVCEATLTKVQMHEWGWRIPFFIAAAVSCFLPYLRSRIHESPDYLEYKSTGRKENILKSLLQNAGGVLLVFAMGALSSGFFYLSLVCMDMGHRSGILEYVISLLLLMLASYASLLVSDANKRKSCLLAVLAIIVVAMYPVVHFIYEGSMIARMAFFVMFGSYWGWYGPFVVLMFPVGARQTCFSAPYSAGYLLGGFSPAICLWLSHATGLNTIPAFYLISFAVTVFVMVALFLRVEDGSYKFVLSGEGGGGK alpha_subgroup Anaplasma_marginale_str._Florida Anaplasma_marginale_str._Florida NC_012026 372062..373354 Dark,M.J.,_Herndon,D.R.,_Kappmeyer,L.S.,_Gonzales,M.P.,_Nordeen,E.,_Palmer,G.H.,_Knowles,D.P._Jr._and_Brayton,K.A. NA 0:1293 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001079.DNA_and_Bacterial_stabilates_available_from_Dr._Kelly_Brayton(kbrayton@vetmed.wsu.edu),_Washington_State_University,_Departmentof_Veterinary_Microbiology_and_Pathology.COMPLETENESS:_full_length. NA 30-SEP-2011 Anaplasma_marginale_str._Florida,_complete_genome. NA Ehrlichieae_Philip_1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Anaplasma_marginale_B9KI63_ANAMF.gb Anaplasma_Theiler_1910_(Approved_Lists_1980)_emend._Dumler_et_al._2001 222474741 BMC_Genomics_10,_16_(2009) NA NC_012026 NA NA rickettsias purple_photosynthetic_bacteria_and_relatives 19134224 1293 NA genomic_DNA NA Florida NA Anaplasma_theileri NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320483 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rickettsiales,_Anaplasmataceae,_Anaplasma Conservation_in_the_face_of_diversity:_multistrain_analysis_of_an_intracellular_bacterium NA NC_012026.1 GTGTACAAACTCTGGAAAAGAATTACTGGCCTAAACGAGGTTGTGCTTGCCGTTTTGCTGTGCACTGCCATAGAAAACTACGACTTTACTGTTTACGGCATGCTTAGTTCCGTTATAGCGCAGGTGTTTTTCTCAGAAGGTGCCTTCCTGTTTGACCAAGGAGAGGGCTCCACATACTTGTCCACACTTATGGGATTTTTAGTTTTTGCATCTGCTTTTGTTGCCAGGCCGCTGGGCGCAACAATGTTTGGTTATTTGGGTGACAGAAAAGGCAGAAGGCTGGCACTTAACATCTCTGCTGGTATGCTAGTGGGATCGGTCTTTTTCATGTCCGTCCTTCCAACTCCTACTACTTGGAGCCTTTCCCCCATTGTGCTTATTGTGCTGAGGATTATTCAGGGATTGTCATACGGCGCCGAAATCGGTGGCGTTGTGTTGATGGCTGAAAGCGTCGGCAGGGACCAGGTGAAGGTGGTATGGGTCATCCGTATTATACTTTGCAGCGTTGGGATACTTGTAGGCACGTTCGTGTTGCGGGTATGTGAGGCCACCCTTACAAAGGTTCAGATGCACGAGTGGGGGTGGAGGATTCCATTTTTTATCGCAGCCGCGGTGAGTTGTTTTCTTCCCTACCTCCGTTCCAGAATTCACGAAAGCCCGGATTATTTGGAATATAAATCTACCGGGCGCAAGGAAAACATTCTCAAATCTTTGCTACAGAACGCCGGTGGAGTACTGCTGGTTTTTGCCATGGGTGCACTTTCCTCTGGGTTTTTTTATCTATCCTTGGTCTGCATGGACATGGGCCACAGGTCGGGTATCTTAGAGTATGTCATCTCATTGTTGCTTTTGATGCTTGCATCCTACGCGAGCCTGCTTGTGTCTGATGCTAACAAGAGGAAAAGCTGCTTACTGGCTGTTTTGGCTATTATAGTAGTTGCGATGTATCCGGTTGTGCACTTCATCTACGAAGGGTCAATGATCGCACGCATGGCGTTTTTCGTGATGTTCGGCTCATATTGGGGATGGTACGGGCCGTTTGTTGTGTTAATGTTTCCGGTGGGTGCGCGGCAGACATGTTTTTCTGCGCCTTACAGCGCTGGGTACCTTCTAGGTGGTTTTTCCCCAGCCATTTGTCTGTGGCTTTCCCATGCCACTGGGCTAAATACTATTCCGGCATTTTACCTGATCTCCTTCGCCGTCACAGTCTTCGTGATGGTTGCGCTTTTCTTGCGGGTTGAAGATGGATCATATAAGTTTGTACTTTCCGGAGAAGGGGGGGGGGGGAAGTAA > 49 AARI_00550 major_facilitator_superfamily,_sugar_porter_family_(TC_2.A.1.1.z) MFS_superfamily_sugar_transporter YP_003915268.1 11 MTATTSDGKLSARLIFIALGAALGGFVFGYDSSIVNGTVDAVEHEFGLNAVTIGFTVSCALLGAAVGAWVAGVVSERVGRVRTMLIASMLLLISALGCGLCFGVADLILWRIVGGIGVGFASVIAPAYIAEVSPAAHRGRLGTMQQMAIVLGIFVAFLVSALLVFVMGSADAIGLFGLAAWRWMYLSLIVPAVVYGLLVLRLPESPRYLVERGRYVEAATVLTRDIGMQAGTETEAKIEEIRATVHIERRQVLKDLLGRFGFHPLVWTGILLSVFQQFVGINVIFYYSTTLWKSVGFAESDSFTISLITSITNVVATIVAVLLIDVIGRKLLLTIGSAIMTVSLGMMAVAFAQSVTTNGAVELPGSWGIVALVAANLFVVGFGATWGPAVWVLLGEMFPNSIRALALGVAAAAQWIANFIVSTSFPALAEAGLALAYGIYAFFALLSLVFVIFLVKETKGRKLEEMTL high_GC_Gram+ Arthrobacter_arilaitensis_Re117 Arthrobacter_arilaitensis_Re117 NC_014550 52080..53486 Monnet,C.,_Loux,V.,_Gibrat,J.F.,_Spinnler,E.,_Barbe,V.,_Vacherie,B.,_Gavory,F.,_Gourbeyre,E.,_Siguier,P.,_Chandler,M.,_Elleuch,R.,_Irlinger,F._and_Vallaeys,T. NA 0:1407 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FQ311875.COMPLETENESS:_full_length. NA 25-AUG-2011 Arthrobacter_arilaitensis_Re117_chromosome,_complete_genome. NA Micrococcaceae_Pribram_1929_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Arthrobacter_arilaitensis_E1VRP4_ARTAR.gb Arthrobacter_Conn_and_Dimmick_1947_(Approved_Lists_1980)_emend._Koch_et_al._1995 308175814 PLoS_ONE_5_(11),_E15489_(2010) NA NC_014550 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 21124797 1407 NA genomic_DNA NA Re117 NA Arthrobacter_arilaiti NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Micrococcineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 861360 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Micrococcineae,_Micrococcaceae,_Arthrobacter The_arthrobacter_arilaitensis_Re117_genome_sequence_reveals_its_genetic_adaptation_to_the_surface_of_cheese NA NC_014550.1 TTAAAGCGTCATTTCCTCGAGCTTGCGCCCCTTGGTTTCCTTGACTAGGAAGATCACGAAGACCAAGGAGAGCAGGGCGAAGAAGGCATAGATGCCGTAGGCCAAGGCCAAGCCTGCTTCTGCCAGGGCCGGGAAGGAAGTGGAGACGATGAAGTTCGCAATCCACTGCGCAGCGGCGGCTACGCCCAGCGCCAATGCGCGGATGGAGTTCGGGAACATTTCGCCCAGGAGCACCCAGACAGCTGGCCCCCAGGTCGCGCCGAAGCCGACGACGAACAGGTTGGCTGCGACCAGTGCGACGATGCCCCAGCTGCCCGGAAGCTCGACGGCACCGTTGGTGGTGACCGACTGGGCAAAGGCGACGGCCATCATGCCCAGTGACACGGTCATGATTGCCGAGCCGATGGTCAGCAGCAGCTTGCGGCCGATCACGTCGATCAGCAGCACGGCCACGATCGTGGCCACCACATTGGTGATCGAGGTGATCAGCGAAATGGTGAAGGAGTCGGACTCGGCGAAGCCCACGGACTTCCACAGCGTGGTGGAGTAGTAGAAAATCACGTTGATGCCGACGAACTGCTGGAATACCGATAGCAGGATGCCGGTCCAGACCAGCGGGTGGAACCCGAAGCGGCCGAGCAGGTCCTTCAATACCTGGCGGCGTTCAATGTGCACAGTAGCTCGGATTTCTTCGATTTTGGCTTCGGTTTCGGTGCCGGCCTGCATGCCTATATCGCGGGTGAGCACGGTGGCGGCTTCCACGTAGCGGCCACGCTCAACGAGATAGCGCGGGGATTCAGGCAGGCGCAGGACCAGCAGGCCATAGACTACGGCCGGAACGATCAGCGAGAGGTACATCCAGCGCCAGGCGGCCAGGCCGAACAGGCCGATGGCATCCGCGGAGCCCATGACGAAGACGAGCAGGGCGCTGACGAGGAAGGCCACGAAGATGCCCAGCACGATGGCCATCTGCTGCATGGTGCCCAAGCGCCCGCGATGGGCTGCTGGGGAAACTTCGGCGATGTAGGCCGGGGCGATTACCGAGGCGAAGCCCACGCCGATGCCGCCGACAATGCGCCAGAGGATCAAGTCCGCAACGCCGAAGCACAGCCCGCAGCCCAGGGCCGAGATGAGCAGCAGCATCGATGCAATGAGCATGGTGCGCACGCGGCCCACGCGTTCGGAGACGACGCCGGCCACCCAAGCGCCCACGGCTGCGCCCAGCAGGGCGCAAGATACGGTGAAACCGATGGTCACTGCGTTGAGCCCGAATTCGTGCTCGACAGCGTCCACGGTGCCGTTAACGATTGATGAGTCATACCCGAAAACAAACCCACCCAATGCCGCGCCGAGGGCGATGAAGATGAGCCGTGCGGATAGTTTTCCGTCTGATGTAGTCGCAGTCAC > 50 AAur_0745 identified_by_match_to_protein_family_HMM_PF00205;_match_to_protein_family_HMM_PF02775;_match_to_protein_family_HMM_PF02776 acetolactate_synthase,_large_subunit YP_946546.1 11 MSTTAGHLIVGQLERAGIKRVYTVPGESFLDVLDGLHGSPIQNVVARQEGGAGFMALAEGRLTELPGVAMVTRGPGAANAFIAVHTAYQDATPLILFVGLIPVADRGRESFQEFDINAWFGSTAKKVVTLDDAASAARVVDDAIFTALSGRPGPVVIGLPEDVLVHVVENATVEPRKVARPEPAAADLSGLTQKLEKARKPLIVVGGEGWTQDSGEQLAAWASRNSIPVVADFRAYDAVPHRSDAYAGFLGYGRSDANAQRLDDADLIVFVGCVRGDVLSDGYKRGLDAETVVVNADANLLGHFGRVDQHIIADVTAFAAALPATAVEVNREEGWFASARADQLTFSTPQPDGGIGVDLGVAMEVLKKEMADDALLTFGAGNHALWPARYLDHNSANSLAAPRNGAMGMGIPAAVAASLAYPGRQVISVAGDGCFMMNGQEIATAMGYGATFIVLVVDNGIFATIREHQEAHYPDRPSGTHMTNPDFAALARSYGGYGERVDRTEDFAAAFHRAVDSGLPALLHLPQDPTTRSPKTSTN high_GC_Gram+ Arthrobacter_aurescens_TC1 Arthrobacter_aurescens_TC1 NC_008711 770676..772007 Mongodin,E.F.,_Shapir,N.,_Daugherty,S.C.,_Deboy,R.T.,_Emerson,J.B.,_Shvartzbeyn,A.,_Radune,D.,_Vamathevan,J.,_Riggs,F.,_Grinberg,V.,_Khouri,H.,_Wackett,L.P.,_Nelson,K.E._and_Sadowsky,M.J. NA 1328:>1332 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000474.COMPLETENESS:_full_length. NA 22-JAN-2012 Arthrobacter_aurescens_TC1,_complete_genome. NA Micrococcaceae_Pribram_1929_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Arthrobacter_aurescens_A1R2T3_ARTAT.gb Arthrobacter_Conn_and_Dimmick_1947_(Approved_Lists_1980)_emend._Koch_et_al._1995 119960487 PLoS_Genet._2_(12),_E214_(2006) NA NC_008711 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 17194220 1332 NA genomic_DNA NA TC1;_ATCC_BAA-1386 NA Arthrobacter_sp._DR-536 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Micrococcineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 290340 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Micrococcineae,_Micrococcaceae,_Arthrobacter Secrets_of_Soil_Survival_Revealed_by_the_Genome_Sequence_of_Arthrobacter_aurescens_TC1 NA NC_008711.1 ATGGCAAGCACGGTCAGCGGAGCCACGGACGCCAGTCCCACGGCAGTACGCGTCGTCGATGAAAGCGTTACCAAGAAGGTGGCCCTGGCTGCCCTCGTGGGCACTGCACTGGAATGGTACGACTTCTTCCTTTTCACCACAGCCGCTGCGCTGGTGTTCAACGCACAGTTCTTCGTTTCCCAGGACCCCTTTGTGGCGGCCATGGGATCCTTCGCCACTCTCGCGGTGGGCTTCGTTGCCCGCCCGATCGGTGGCTTCGTTTTCGGTGCCCTTGGAGACAAGGTTGGCCGCAAGAAGATCCTCATGGTCACCATCGTGGGCATCGGTATTGTCACCGGCCTCATCGGTCTCCTGCCGAACTACATGACCATCGGCCTGGCAGCTCCCATCCTGCTGGTTGCCTTGCGCATCGTCCAAGGCCTTGCCGTGGGTGGTGAGTGGAGCGGCGCGGTGATTATCGCCGTCGAGAATGCTCCGGTGGAGAAGCGCGCACGCTACGCCGCCCTGCCGCAGATCGGTTCCCCGATCGGCACCATCCTGTCCTCCGGTGGCTTCTTCGGCATGCTGTTCCTGGTGGGCCAGAGCAACTTTGACGCCTGGGGCTGGCGCATCCCCTTCATCGCAGCCATCCCGCTGCTTGCCATCTCATTGTGGATCCGCAGCCGGCTCAGCGAATCACCCGAATTTGAAGCCCTCATGGAGTCCGGCGAGACCGAACACGCTCCCATCCGCGGCGTCCTGAAGAACAGCTGGCGCCAGATCCTGGTGGGCATGTGCTCGGCGTTGCTCGGCATCGGTGGCTTCTACCTCATCACCAGCTTCGTGGTCTTCTACGGCACCAAGGTCCTCAAGCTGCCCTCTGAACTGCTGCTTTTGGGCACCCTGCTTGCTGCAGCCCTGGAGATCGGCGCCCTCATCTGGGCCGGACGCATGGGCGAAAAGTTCGGCGCCAGCAAGGTCATCCTGTGGGGCGGCGTGGCCTCGGCCATCATTGCCATCCCGGTCTTCCTCGCCATCGACAGTCGCAACCCCGTCCTTGTTGTCCTGGGCATGGTGATCGGCGTCGCCGTCCTTTCCATCCCGTACGCCGTCTCCGGCACGGCACTGACAGCGCTGTTCGCCACGAAGGTCCGCTACACCGGCGTCGCCATCACCTCCAACACCGCCGGCGTCATCTCCGGATTCGTGCCGCTGATCGCCACCGCCTTGGTAGCAGCCAACAACTCCTTCTGGCCCGGCGCCATCATCCTGCTGGTGGTTTCCGTACTGACGGCACTCTCCGGTCTGTTCCTCCCCGCCCTTTCCATCGAAGAAGAAGGAATGAAGCATTGA > 51 AAur_1194 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transmembrane_efflux_protein_(MFS) YP_946980.1 11 MPWRWKVQGRIFLIGGLGFMFDAWDVTLNGILIPLLSKHWSLQPADAAWIGTANLIGMAVGAFAWGTIADTIGRKKAFTATLLIFSIFTVLGAFAPDIVWFCLFRFMAGFGLGGCIPVDYALVGEFTPRKQRGKVLTAMDGWWPIGAALCGFISAGLVAVFGDWRLTMLIMVLPALLVFWVRRSVPESPLFLIRAGRRAEAAAVIDGLVEATGAEPRAYSLPEPQAAPRLSPGSAWAQLRRIWQFNWKITTAAWALFFSILLVYYLSLTWMPRILIGAGFEEYKAFVTTASMAAVGLLGVVVAALLVERVGRKWILAITGPLSALTLVIVAFVVDVPSAAVFWLLVFGFVVQVAIPVLYAYVSELYPTELRGSGFGWASTFSRIGAGFGPLVFASFFWPEFGLAQSFAMAGGLVLLSVLWMAFFAPETKQRELS high_GC_Gram+ Arthrobacter_aurescens_TC1 Arthrobacter_aurescens_TC1 NC_008711 1271408..1272712 Mongodin,E.F.,_Shapir,N.,_Daugherty,S.C.,_Deboy,R.T.,_Emerson,J.B.,_Shvartzbeyn,A.,_Radune,D.,_Vamathevan,J.,_Riggs,F.,_Grinberg,V.,_Khouri,H.,_Wackett,L.P.,_Nelson,K.E._and_Sadowsky,M.J. NA 0:1305 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000474.COMPLETENESS:_full_length. NA 22-JAN-2012 Arthrobacter_aurescens_TC1,_complete_genome. NA Micrococcaceae_Pribram_1929_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Arthrobacter_aurescens_A1R418_ARTAT.gb Arthrobacter_Conn_and_Dimmick_1947_(Approved_Lists_1980)_emend._Koch_et_al._1995 119960487 PLoS_Genet._2_(12),_E214_(2006) NA NC_008711 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 17194220 1305 NA genomic_DNA NA TC1;_ATCC_BAA-1386 NA Arthrobacter_sp._DR-536 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Micrococcineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 290340 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Micrococcineae,_Micrococcaceae,_Arthrobacter Secrets_of_Soil_Survival_Revealed_by_the_Genome_Sequence_of_Arthrobacter_aurescens_TC1 NA NC_008711.1 TTAGGAGAGTTCGCGCTGCTTCGTTTCCGGCGCGAAGAACGCCATCCACAGCACGGACAGCAGCACCAGACCACCGGCCATAGCGAACGACTGCGCCAACCCGAACTCCGGCCAGAAGAACGAGGCAAACACCAGCGGACCGAAGCCTGCCCCGATGCGGGAGAACGTCGAAGCCCAGCCGAAGCCGGAACCGCGAAGTTCGGTGGGGTACAGCTCGGACACGTACGCATAAAGCACCGGGATGGCCACCTGGACCACGAAGCCGAACACCAGCAGCCAGAACACAGCAGCCGACGGCACATCCACCACAAAGGCCACGATCACAAGAGTCAAGGCGGACAGTGGACCGGTGATGGCCAGGATCCACTTGCGGCCCACACGCTCCACCAGCAGCGCTGCCACCACCACGCCTAAAAGTCCGACGGCGGCCATGCTCGCCGTCGTGACGAACGCCTTGTACTCCTCGAATCCGGCACCGATCAGGATCCGGGGCATCCACGTCAGGGACAAGTAATAGACCAACAGGATGCTGAAGAACAGGGCCCAGGCCGCCGTGGTGATCTTCCAGTTGAACTGCCAAATCCGGCGCAACTGGGCCCACGCGCTGCCGGGGGAGAGGCGCGGCGCGGCCTGCGGTTCGGGCAGGCTGTACGCGCGGGGCTCGGCGCCGGTGGCCTCGACCAAACCGTCGATCACCGCCGCAGCTTCAGCACGGCGGCCCGCACGGATCAGGAACAGCGGCGACTCCGGAACCGAACGTCGAACCCAGAAGACCAACAACGCGGGCAGCACCATGATCAGCATGGTGAGCCGCCAGTCGCCAAAAACGGCAACCAGTCCGGCGGAGATGAATCCACAGAGCGCGGCGCCGATCGGCCACCACCCATCCATGGCCGTGAGCACCTTGCCCCTTTGCTTGCGGGGCGTGAACTCACCCACCAGCGCATAATCCACGGGAATGCAGCCCCCCAGGCCGAAGCCGGCCATGAAGCGGAAGAGGCAGAACCACACGATGTCCGGGGCGAATGCACCCAGAACCGTGAAGATGCTGAAAATCAGGAGGGTGGCAGTGAACGCCTTCTTGCGCCCGATGGTGTCCGCGATGGTTCCCCATGCGAATGCACCCACCGCCATGCCGATCAGGTTGGCCGTGCCGATCCACGCGGCATCAGCCGGTTGCAGCGACCAGTGCTTGGACAGCAGCGGAATCAGGATGCCGTTGAGCGTCACATCCCAGGCGTCGAACATGAAGCCGAGCCCGCCGATCAGGAAAATCCTGCCTTGGACTTTCCACCGCCATGGCAA > 52 Achl_0118 KEGG:_art:Arth_0827_sugar_transporter;_TIGRFAM:_sugar_transporter;_PFAM:_general_substrate_transporter;_major_facilitator_superfamily_MFS_1 sugar_transporter YP_002486210.1 11 MTARTETPGAAAPRKFMRKIAFFSTFGGLLFGYDTGVINGALPFMRDDLSLNPLQEGLVTSALLLGAAFGAMYTGRLSDRNGRRRTIRWLAVAFFITTAAAAAAPTTELLVVARFLLGLCVGGASVTVPVYLAEMASSKDRGRIVTQNEVMIVSGQLIAYVSNALLGTFFGDDHIWRWMVALATLPAVVLWFGTLVLPESPRWLAAGGRGDEAFDVLRRVRPANELQREFDDVIRMAREDYDSSKGGWRELLAHSWTKRILIVGLGMAAIQQISGVNAIMYYSTSILSEAGFGTTGALWATIANGAVSVAAATTGMALLGRVRRRPMLITGLAGTSSSLLLIGIVSLVTEPGMLRAVLFLGLMATFLAFMQGSIGPVTWLMLSEMFPLTLRGAGMGVCVFALWVINFLIGLFFPVLVSQIGISGTFFIFVALGAAGLVFLKVYMPETKGKSLEELEEEFKTGNTGALVREGSAVEPTPIS high_GC_Gram+ Arthrobacter_chlorophenolicus_A6 Arthrobacter_chlorophenolicus_A6 NC_011886 122092..123534 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Goltsman,E.,_Clum,A.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Jansson,J._and_Richardson,P. NA 0:1443 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001341.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4024171Source_DNA_and_bacteria_available_from_Janet_Jansson(janet.jansson@microbe.slu.se)Source_DNA_available_from_Janet_Jansson(janet.jansson@microbe.slu.se)Contacts:_Janet_Jansson_(janet.jansson@microbe.slu.se)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-PGFFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 27-JAN-2012 Arthrobacter_chlorophenolicus_A6_chromosome,_complete_genome. NA Micrococcaceae_Pribram_1929_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Arthrobacter_chlorophenolicus_B8H8E7_ARTCA.gb Arthrobacter_Conn_and_Dimmick_1947_(Approved_Lists_1980)_emend._Koch_et_al._1995 220910783 Unpublished NA NC_011886 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1443 NA genomic_DNA NA A6 NA Arthrobacter_chlorophenolicus_Westerberg_et_al._2000 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Micrococcineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 452863 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Micrococcineae,_Micrococcaceae,_Arthrobacter Complete_sequence_of_chromosome_of_Arthrobacter_chlorophenolicus_A6 NA NC_011886.1 ATGACAGCCCGGACAGAAACCCCTGGCGCGGCCGCACCACGGAAGTTCATGCGGAAGATCGCGTTCTTCTCCACCTTCGGCGGCCTGCTCTTCGGCTACGACACCGGCGTCATCAACGGCGCCCTGCCGTTCATGCGCGACGACCTTTCGTTGAACCCGCTGCAGGAAGGGCTGGTCACGTCTGCGCTCCTGCTTGGCGCGGCGTTCGGGGCCATGTACACCGGGCGCCTCTCGGACCGGAACGGCCGGCGGCGCACCATTCGCTGGCTCGCCGTCGCATTCTTCATAACGACGGCGGCCGCGGCCGCCGCGCCCACCACCGAACTCCTGGTGGTGGCCAGGTTCCTTTTGGGCCTGTGCGTGGGCGGCGCCTCGGTGACGGTGCCGGTGTATCTCGCCGAGATGGCATCCAGCAAGGACCGCGGCCGTATCGTCACGCAGAACGAGGTGATGATCGTCTCCGGCCAGTTGATCGCGTACGTGTCGAATGCCTTGCTGGGGACGTTCTTCGGCGACGACCACATCTGGCGGTGGATGGTGGCACTGGCCACCCTTCCCGCCGTCGTCCTGTGGTTTGGGACGCTGGTGCTGCCGGAATCGCCGCGCTGGCTGGCGGCCGGGGGACGCGGCGACGAAGCCTTCGACGTGCTGCGCCGGGTCCGGCCGGCAAACGAGCTGCAGCGCGAATTCGACGACGTGATCCGGATGGCGCGAGAGGACTACGACTCCAGCAAAGGCGGATGGCGGGAACTACTCGCGCACTCCTGGACCAAACGGATCCTGATTGTGGGGCTGGGGATGGCAGCGATCCAGCAGATCAGCGGAGTCAACGCCATCATGTACTACAGCACGTCCATCCTGTCGGAAGCCGGCTTCGGAACCACCGGGGCGCTGTGGGCCACCATCGCCAACGGTGCCGTGTCCGTGGCCGCGGCCACCACCGGCATGGCCCTTCTCGGCAGGGTCCGGCGGCGGCCCATGCTCATCACCGGCCTGGCCGGCACGTCCTCGTCACTGCTCCTGATCGGCATCGTGTCTTTGGTGACCGAACCGGGCATGCTCCGGGCGGTGCTGTTCCTGGGCCTGATGGCGACGTTCCTGGCCTTCATGCAGGGCTCCATCGGCCCGGTGACCTGGCTGATGCTTTCCGAGATGTTCCCCCTGACGCTCCGCGGCGCGGGGATGGGCGTGTGCGTTTTCGCGCTCTGGGTCATCAACTTCCTCATCGGGCTGTTTTTCCCTGTATTGGTCAGCCAGATCGGCATTTCCGGGACGTTCTTCATCTTCGTGGCGCTGGGCGCCGCCGGCCTGGTGTTCCTCAAGGTGTACATGCCCGAAACCAAGGGAAAGTCCCTCGAAGAACTCGAAGAGGAATTCAAGACAGGCAACACCGGTGCGCTGGTCCGTGAGGGCAGCGCCGTAGAACCAACCCCTATTTCCTAA > 53 ARB_04257 NA MFS_sugar_transporter,_putative XP_003017377.1 NA MPSPTQISSKSTDKRRGQYFKDYFNQPTRAEIGTMVAILEVGAFISSLLVGKIGDIIGRRRTILYGSMVFFVGGAFQTFATGIPMMLVGRIVAGLGVGALSTIVPVYQSEISPPHNRGQLACIEFTGNICGYAASVWVDYFCSYIRSDFSWRLPLFLQCVMGALLGFGSLIICESPRWLLDHDHDEEGMVVIANLYGKGDLHNDKARQEYREIKTNVLVTRQEGERTYKDMFKRYYRRVFIAMSAQAFAQLNGINVISYYAPLVFESAGWVGRDAILMTGINGITYLLSTIPPWYLVDRWGRRPILLSGAILMIISLSAMAYFIHINISYTPALTVISVMIYNAAFGFSWGPIPWLYPPEILPLSIRAKGASLSTATNWAFNWLVGELTPVLQEAIHWRLYLMHAFFCACSFVVVFFLYPETSGVRLEDMELIFDDAQSAAPTPASQAERGSLMGGLGSPSSFDIRRGNEPGGPSIPNLHLNPPTPRPGSMAGEVDKAAEGEQQLTQSKEGGIGTWISSLINRGKDKRNRGDHSQYRQIGQHEDE bitunicate_ascomycetes Arthroderma_benhamiae_CBS_112371 Arthroderma_benhamiae_CBS_112371 XM_003017331 NA Burmester,A.,_Shelest,E.,_Gloeckner,G.,_Heddergott,C.,_Schindler,S.,_Staib,P.,_Felder,M.,_Petzold,A.,_Szafranski,K.,_Monod,M.,_Winkler,R.,_Kniemeyer,O.,_Schroeckh,V.,_Hertweck,C.,_Platzer,M.,_Guthke,R.,_Heitman,J.,_Wostemeyer,J.,_Zipfel,P.F._and_Brakhage,A.A. NA 0:1638 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315113).COMPLETENESS:_incomplete_on_both_ends. NA 10-AUG-2010 Arthroderma_benhamiae_CBS_112371_MFS_sugar_transporter,_putative,_mRNA. NA dermatophytes /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Arthroderma_benhamiae_D4AJ09_ARTBC.gb Arthroderma 302510850 Unpublished fungi XM_003017331 NA NA Onygenales sac_fungi NA 1638 NA mRNA NA CBS_112371 NA Arthroderma_benhamiae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 663331 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Arthrodermataceae,_Arthroderma Dermatophyte_fungi_deploy_unique_virulence_strategies_to_cause_cutaneous_infection NA XM_003017331.1 ATGCCCTCTCCCACTCAAATATCATCAAAATCGACTGACAAGCGTAGGGGTCAATATTTTAAAGATTATTTCAACCAGCCGACTCGTGCAGAGATCGGCACCATGGTAGCCATTCTCGAAGTAGGAGCGTTTATATCCTCACTCCTCGTGGGGAAAATCGGTGACATAATCGGTCGTCGACGAACTATTCTCTATGGATCCATGGTCTTCTTTGTCGGTGGTGCCTTCCAGACATTTGCTACGGGAATTCCTATGATGCTTGTAGGCCGTATCGTAGCTGGTCTAGGTGTTGGTGCCCTCTCCACGATCGTTCCTGTTTATCAATCTGAAATCTCTCCACCTCACAATCGGGGTCAACTCGCCTGTATTGAGTTTACGGGGAATATTTGTGGGTACGCCGCCAGTGTCTGGGTTGACTACTTTTGCAGCTACATCCGGAGCGACTTTTCTTGGCGCCTACCACTATTCCTTCAGTGTGTTATGGGTGCACTCCTCGGCTTTGGAAGCTTGATCATCTGTGAATCTCCTCGGTGGCTTTTGGACCATGACCATGATGAAGAGGGTATGGTCGTCATTGCCAACCTGTACGGTAAGGGTGACCTTCACAACGACAAGGCTAGACAGGAATACCGTGAGATCAAGACCAATGTTCTCGTCACACGACAGGAAGGCGAACGGACATACAAAGACATGTTCAAGCGTTACTACAGGCGTGTCTTTATTGCGATGTCTGCCCAGGCCTTTGCCCAGCTCAATGGTATCAACGTCATCTCATACTATGCTCCCCTTGTGTTCGAATCTGCCGGCTGGGTTGGCCGTGACGCCATCTTGATGACCGGAATCAACGGCATTACCTATCTGCTCTCCACAATTCCGCCATGGTATCTCGTTGATAGATGGGGTCGCCGACCAATTCTCTTATCAGGTGCTATATTGATGATCATATCCCTCTCTGCCATGGCCTACTTTATCCATATCAATATATCCTACACCCCAGCCCTGACTGTCATATCTGTCATGATATACAATGCTGCCTTTGGGTTCTCGTGGGGTCCCATCCCATGGTTGTACCCTCCAGAGATCCTTCCTCTAAGCATCCGTGCAAAGGGTGCAAGTTTGAGTACCGCAACGAACTGGGCATTCAACTGGCTTGTTGGAGAGCTTACTCCTGTGCTACAGGAGGCGATCCACTGGAGACTCTACCTCATGCATGCCTTTTTCTGTGCCTGCAGTTTTGTTGTCGTATTCTTCCTTTACCCTGAAACTAGTGGTGTTCGCCTCGAGGACATGGAACTTATCTTCGACGATGCTCAGTCCGCCGCCCCTACTCCCGCCAGCCAAGCTGAGCGCGGTTCTCTCATGGGAGGCCTTGGGTCGCCATCATCATTCGACATTCGGCGAGGCAACGAACCAGGTGGACCATCTATTCCTAACCTGCATCTCAACCCACCTACTCCCAGACCTGGTTCTATGGCTGGTGAGGTCGATAAGGCTGCCGAGGGTGAACAACAGCTGACCCAGTCGAAAGAAGGCGGTATTGGGACATGGATTTCCAGTCTTATTAACCGCGGTAAAGACAAGAGGAACAGAGGTGATCACAGTCAATATCGTCAGATCGGACAGCATGAAGACGAGTAA > 54 ARB_04782 NA MFS_sugar_transporter,_putative XP_003016493.1 NA MGFRYTFGIALFAAIGTFLFLYETPIQWTHRRRKSADTVYPDQYRATDKNKKVVAVYIAGEAVGALTQTFIGDKLGHIRFMQFMCVVVTVGTSIQTASVNIGMFLAGRALAGYAVGGLVGTVPIYLSEVSAPHQRGLIGGISGCGIALGTMMSNWVGFACSYAPYGPVQWRLPLSIQIPWGIILFIGLATFMPNSPRQLLRIGMVDEARAAFLKIRRDYDLNESIEEFTLMKAQIEYEMRREVTSIREVFNLFKNRALVSIAVQTMTSLTGVNVIQYYQTAVYGTVAFLSNFITTLYLTDQWGRRKMILSGLSGVILVEIYAAVMQRTFQNTNNQVGKGFSILGIYLFVVNYCKSPNQIYILDILDTKGSRLDGMLNSTTWLYGAEVLPVSLRSKVMGLASASHFIVNVGITEAGPSAFANIKENYYYVFVACTLFFLIVGYFYFPETKHKSLEEIATSFGDKVVGVSGSDFETEREVMAKQPAIQHVEAHSTASTTV bitunicate_ascomycetes Arthroderma_benhamiae_CBS_112371 Arthroderma_benhamiae_CBS_112371 XM_003016447 NA Burmester,A.,_Shelest,E.,_Gloeckner,G.,_Heddergott,C.,_Schindler,S.,_Staib,P.,_Felder,M.,_Petzold,A.,_Szafranski,K.,_Monod,M.,_Winkler,R.,_Kniemeyer,O.,_Schroeckh,V.,_Hertweck,C.,_Platzer,M.,_Guthke,R.,_Heitman,J.,_Wostemeyer,J.,_Zipfel,P.F._and_Brakhage,A.A. NA 0:1497 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315112).COMPLETENESS:_incomplete_on_both_ends. NA 10-AUG-2010 Arthroderma_benhamiae_CBS_112371_MFS_sugar_transporter,_putative,_mRNA. NA dermatophytes /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Arthroderma_benhamiae_D4AM92_ARTBC.gb Arthroderma 302509065 Unpublished fungi XM_003016447 NA NA Onygenales sac_fungi NA 1497 NA mRNA NA CBS_112371 NA Arthroderma_benhamiae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 663331 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Arthrodermataceae,_Arthroderma Dermatophyte_fungi_deploy_unique_virulence_strategies_to_cause_cutaneous_infection NA XM_003016447.1 ATGGGCTTCCGGTATACCTTTGGGATTGCCCTTTTCGCAGCAATCGGGACATTTCTCTTCTTATATGAAACACCCATCCAATGGACTCACAGGCGCCGTAAGTCTGCAGATACAGTCTATCCCGATCAGTATCGTGCCACTGACAAGAACAAAAAGGTTGTTGCTGTGTATATAGCAGGGGAGGCTGTTGGTGCCCTTACTCAGACCTTCATTGGCGACAAACTTGGGCACATTCGGTTCATGCAGTTCATGTGTGTGGTGGTCACCGTTGGGACATCCATACAAACAGCTTCTGTGAATATTGGAATGTTCCTTGCCGGGCGTGCTTTGGCAGGCTATGCTGTAGGCGGGCTAGTTGGCACTGTTCCCATATACCTCAGTGAAGTTTCTGCACCGCATCAAAGGGGGCTTATTGGCGGTATATCTGGTTGTGGTATTGCATTGGGAACTATGATGTCTAACTGGGTGGGCTTTGCGTGTTCCTATGCCCCTTATGGTCCAGTGCAATGGCGTCTCCCTCTCAGCATCCAGATCCCCTGGGGAATAATCTTGTTCATCGGCCTTGCTACCTTCATGCCAAACTCCCCTCGTCAACTCCTGAGAATTGGCATGGTGGATGAGGCGCGTGCTGCTTTCCTGAAGATTCGCCGTGATTACGACTTAAATGAGTCTATCGAGGAATTTACATTGATGAAGGCACAGATCGAGTACGAGATGAGGAGAGAAGTTACTTCCATCCGTGAGGTCTTCAACCTGTTCAAAAATCGAGCTCTTGTCTCCATTGCCGTTCAGACTATGACTAGTCTCACTGGTGTCAATGTCATCCAGTACTATCAGACTGCTGTGTATGGCACCGTTGCTTTTCTCTCAAATTTTATCACCACTTTATACCTTACCGATCAATGGGGCCGCCGGAAGATGATTCTCTCAGGCTTATCTGGGGTTATCTTGGTAGAAATATACGCTGCAGTCATGCAACGGACATTTCAAAACACAAACAACCAAGTTGGAAAGGGGTTTTCCATCCTGGGAATCTACCTCTTCGTTGTCAATTATTGTAAGAGCCCAAATCAAATTTACATCTTAGACATACTTGATACTAAAGGTTCTCGGTTAGATGGCATGCTTAACAGCACCACCTGGCTATATGGAGCGGAGGTCCTACCTGTGTCCCTTAGAAGCAAAGTGATGGGTCTTGCTTCTGCCTCTCACTTTATAGTTAATGTTGGCATTACTGAGGCTGGCCCAAGTGCTTTTGCAAATATTAAAGAAAATTATTACTACGTTTTTGTTGCCTGCACTCTGTTTTTTCTCATTGTTGGATATTTCTACTTTCCAGAAACCAAACACAAATCTCTCGAGGAAATCGCAACATCATTTGGTGATAAGGTTGTGGGTGTTTCTGGTAGTGACTTTGAGACCGAACGAGAAGTAATGGCGAAACAACCGGCTATCCAACATGTCGAGGCGCACTCTACCGCATCGACAACCGTCTAA > 55 ARB_02098 NA hypothetical_protein XP_003011545.1 NA MAASSSRDDPKQQGDYDDTLTDMSSNEELLATIPKGTMDPVYEAKALLLNKAILDIGMGWYQWQLFIVIGFGWASDNMWPIITSLIFTPVKNEFMPSKAPLLTLAQNLGLLVGAVFWGFGCDIYGRKWAFNLTIGITAVFGLAAAGSPSFSAIGAFAALWSIGVGGNLPVDSAIFLEFLPSTHQYLLTILSIDWALAQVLANLVAWPLLGNYSCQENSECTRSANMGWRYFLIAMGGLSMIMFLLRFTCFTIFESPKYLMGKGQDEEAVRVVHEVARRNGKVSTLTVEDLARIGPPIRSNAKVAVQRKLSKFDFKHVNALFGSPTLAFSTSVIIGVWAFIGLGFPLYNAFLPFIQASRGAHFGDSSTYITYRNSLIIAVLGIPGSLVGGALVEIPYIGRKGALSLSTVMTGVFLFCSTTARTSDALLGWNCAYNFMSNIMYAVLYAYTPEIFPTKDRGTGNALTAAANRIFGVMAPIIAMFANLQTAAPVYVSGALFIAAGILVLFQPFESRGKASL bitunicate_ascomycetes Arthroderma_benhamiae_CBS_112371 Arthroderma_benhamiae_CBS_112371 XM_003011499 NA Burmester,A.,_Shelest,E.,_Gloeckner,G.,_Heddergott,C.,_Schindler,S.,_Staib,P.,_Felder,M.,_Petzold,A.,_Szafranski,K.,_Monod,M.,_Winkler,R.,_Kniemeyer,O.,_Schroeckh,V.,_Hertweck,C.,_Platzer,M.,_Guthke,R.,_Heitman,J.,_Wostemeyer,J.,_Zipfel,P.F._and_Brakhage,A.A. NA 0:1554 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315089).COMPLETENESS:_incomplete_on_both_ends. NA 10-AUG-2010 Arthroderma_benhamiae_CBS_112371_hypothetical_protein,_mRNA. NA dermatophytes /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Arthroderma_benhamiae_D4B0X0_ARTBC.gb Arthroderma 302499097 Unpublished fungi XM_003011499 NA NA Onygenales sac_fungi NA 1554 NA mRNA NA CBS_112371 NA Arthroderma_benhamiae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 663331 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Arthrodermataceae,_Arthroderma Dermatophyte_fungi_deploy_unique_virulence_strategies_to_cause_cutaneous_infection NA XM_003011499.1 ATGGCTGCAAGCAGTTCGAGGGATGACCCCAAACAACAGGGGGACTATGACGACACACTCACCGACATGTCCTCGAACGAGGAGCTTCTGGCCACTATTCCCAAAGGCACTATGGACCCGGTTTATGAGGCCAAAGCATTGTTGTTGAATAAGGCCATTCTCGACATTGGAATGGGATGGTATCAATGGCAGCTATTCATTGTTATTGGCTTCGGATGGGCCAGTGATAATATGTGGCCGATTATTACCTCCCTCATCTTTACCCCTGTGAAAAATGAGTTCATGCCGTCAAAGGCGCCGCTTCTTACGCTTGCCCAAAACCTGGGGCTGCTGGTTGGTGCTGTCTTCTGGGGATTTGGGTGTGATATCTATGGGAGAAAGTGGGCCTTTAACTTGACAATTGGGATCACTGCCGTGTTTGGACTAGCAGCAGCAGGTTCACCATCCTTCTCTGCCATTGGGGCCTTTGCCGCGTTGTGGTCTATCGGAGTAGGTGGCAACTTACCCGTCGACTCAGCCATCTTCCTTGAGTTCCTCCCATCAACGCACCAGTACCTCCTTACCATTCTTTCGATCGACTGGGCCCTGGCACAAGTTCTGGCGAACCTAGTTGCCTGGCCACTTCTCGGAAACTATTCCTGCCAGGAAAATTCCGAATGCACAAGGTCTGCTAACATGGGCTGGAGGTACTTCCTGATTGCCATGGGAGGGCTCTCAATGATCATGTTCCTCCTGCGATTTACTTGCTTCACCATCTTCGAGTCTCCGAAGTATCTAATGGGGAAAGGTCAGGATGAAGAAGCAGTCCGGGTTGTGCATGAAGTTGCCAGACGAAACGGCAAAGTTTCCACTCTTACTGTTGAAGACCTTGCCCGCATAGGACCTCCCATAAGAAGCAACGCCAAAGTTGCAGTGCAGCGCAAGTTGTCAAAGTTTGATTTTAAGCATGTGAATGCGTTGTTTGGATCTCCTACACTAGCATTTTCAACTTCAGTTATAATCGGTGTTTGGGCGTTCATTGGTCTTGGATTTCCTCTATACAACGCATTTCTGCCATTCATCCAAGCCTCTCGAGGCGCGCATTTTGGTGACAGCTCTACCTACATTACTTATAGGAACTCTCTCATTATTGCAGTCCTAGGAATACCGGGCTCTCTTGTCGGAGGCGCACTGGTCGAGATACCCTATATTGGCCGCAAAGGGGCCCTCTCACTTTCCACCGTGATGACAGGTGTCTTTCTCTTCTGCTCCACAACTGCAAGGACCTCTGATGCGCTACTGGGCTGGAATTGCGCCTACAACTTCATGAGTAATATCATGTATGCCGTTCTGTATGCCTACACGCCTGAGATTTTCCCTACCAAGGACCGAGGAACTGGTAATGCGTTGACTGCTGCCGCGAATCGCATTTTCGGCGTTATGGCCCCCATTATTGCCATGTTTGCCAATCTTCAGACAGCCGCACCCGTGTATGTTAGCGGTGCCTTGTTCATAGCGGCTGGTATCTTAGTTTTGTTCCAGCCCTTTGAGTCCAGGGGGAAGGCTAGCTTGTGA > 56 MGYG_02748 NA hypothetical_protein XP_003175218.1 NA MPFVNPFAKEQKSFPGVLIPLSGGSPTSKIPAKKKSVGGTFDEEGAASPPPEYETELTLEALRAEVEAAVVSTGQDTAYDRKSMVINRAVQDIGMGRYQWQLFVLCGFGWFADNLWLQGVALTLPKLSLEFGVSDSHVRFTTCALFIGLCLGSVFWGTASDIIGRRLAFNMTLFLCGVFGIAVGGSPTWIGVCAMFACLGLGVGGNLPVDGALFLEFLPFASGNLLTMLSVWWPVGQLVASLIAWGLVPKYTCAEGLPSCHLAPAPCCAKEDNMGWRYFTYILGVLTFLMFLSRFFLFHLYESPKFLLSRGRQEDAVAAVHGIAHKNGAKTWLTVDILNEIGGHPDEVQSQKLSTTEIIKRQLNKFSGERIAPLFATKRLGLTTVLLWFCWATIGMGYPLFNAFLPQYLSQGGGDKYPPPTTYTVYRDYAITSIVGVPGSLIACYTVDIPYIGRKGTMAISTLITGIILFCFTISPDPKIRLACTCLEAFFQNIMYGVLYAYTPEVFPAPNRGTGTGIASCLNRICGLLAPIVAIYGGDTNPKAPVYASGGLMLAAFAAMVLLPIETRGKASL bitunicate_ascomycetes Arthroderma_gypseum_CBS_118893 Arthroderma_gypseum_CBS_118893 XM_003175170 NA Cuomo,C.,_Henn,M.R.,_Jaffe,D.,_Young,S.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Alvarado,L.,_Kodira,C.D.,_White,T.C.,_Oliver,B.G.,_Graser,Y.,_Abdel-Rahman,S.,_Gurr,S.J.,_Martinez-Rossi,N.,_Summerbell,R.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1722 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003345200).COMPLETENESS:_incomplete_on_both_ends. NA 15-DEC-2010 Arthroderma_gypseum_CBS_118893_hypothetical_protein_(MGYG_02748)_mRNA,_complete_cds. NA dermatophytes /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Arthroderma_gypseum_E4UNY2_ARTGP.gb Arthroderma 315051687 Unpublished fungi XM_003175170 NA NA Onygenales sac_fungi NA 1722 NA mRNA NA CBS_118893 NA Nannizzia_gypsea NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 535722 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Arthrodermataceae,_Arthroderma The_Genome_Sequence_of_Arthroderma_gypseum_CBS_118893 NA XM_003175170.1 ATGCCGTTTGTGAACCCTTTCGCGAAGGAGCAAAAGTCCTTCCCTGGGGTCCTAATACCACTGTCCGGTGGTTCGCCAACAAGTAAAATCCCAGCAAAAAAGAAATCTGTAGGCGGCACTTTTGATGAAGAGGGTGCTGCCAGCCCTCCACCGGAATATGAGACCGAATTAACCCTTGAAGCTCTGAGAGCTGAAGTTGAGGCTGCTGTTGTATCCACCGGTCAGGATACCGCATACGACAGAAAGTCCATGGTCATTAACAGAGCAGTTCAAGATATTGGAATGGGCCGCTACCAATGGCAACTGTTTGTCTTGTGTGGATTTGGCTGGTTCGCAGACAATCTATGGCTTCAAGGTGTTGCTCTCACACTACCGAAACTATCTCTTGAATTCGGCGTTAGCGACTCCCATGTTCGATTCACTACCTGTGCTTTGTTTATCGGCCTTTGCCTAGGATCCGTCTTCTGGGGAACTGCTTCCGACATCATCGGTCGTCGTCTTGCTTTCAATATGACTCTATTCCTATGCGGTGTTTTCGGAATAGCAGTCGGTGGTAGCCCAACGTGGATCGGTGTTTGTGCTATGTTTGCCTGTCTCGGCCTAGGCGTTGGTGGAAACCTACCTGTTGATGGCGCATTGTTCCTCGAGTTTCTTCCCTTTGCATCTGGAAACCTCCTGACAATGCTTAGTGTATGGTGGCCTGTGGGTCAACTGGTTGCTAGTCTTATCGCATGGGGTCTTGTACCAAAGTATACTTGTGCTGAGGGTCTACCTTCATGCCATCTTGCTCCTGCTCCATGCTGTGCTAAGGAAGACAACATGGGATGGCGATACTTCACCTATATCCTTGGAGTTCTCACATTCCTCATGTTCTTGTCTCGTTTCTTCCTATTCCACCTCTATGAGTCTCCCAAGTTCCTCCTTTCTCGTGGACGTCAGGAAGACGCCGTCGCCGCCGTACACGGCATTGCACATAAGAATGGAGCAAAAACTTGGCTTACCGTTGACATTCTCAACGAGATTGGAGGACACCCCGATGAAGTACAAAGCCAAAAGCTGAGCACTACTGAGATTATCAAGAGACAATTAAACAAGTTCTCTGGAGAGCGTATCGCACCACTCTTCGCAACCAAGAGACTTGGATTGACCACTGTCCTTCTTTGGTTCTGCTGGGCAACCATCGGAATGGGTTATCCTCTTTTCAACGCTTTCTTGCCACAGTACCTTTCTCAGGGCGGTGGTGACAAGTACCCACCCCCAACCACCTATACCGTTTACCGTGACTATGCCATTACTTCTATTGTCGGTGTTCCTGGATCTCTGATTGCCTGCTACACAGTCGACATTCCTTATATTGGACGTAAGGGTACCATGGCCATTTCCACCCTGATCACTGGAATTATTCTTTTCTGCTTCACTATTTCGCCGGATCCAAAAATCCGCCTGGCTTGCACCTGTCTCGAGGCCTTCTTCCAAAATATCATGTACGGTGTTCTATACGCCTACACCCCCGAGGTTTTCCCAGCACCCAACCGTGGTACTGGAACTGGTATTGCCAGCTGCCTCAACCGTATTTGCGGCCTGCTAGCACCTATTGTTGCCATCTACGGCGGTGACACAAACCCTAAGGCACCTGTGTATGCCTCCGGTGGCCTAATGTTGGCTGCATTTGCTGCCATGGTACTGCTTCCAATCGAGACCAGAGGCAAGGCATCCCTCTAA > 57 MGYG_03968 NA H(+)-myo-inositol_cotransporter XP_003173796.1 NA MKLSNIFQRPPRYVVASILCSLGGFLFGVDTAIIGPVTVMQSFTSAFGHPSPTLHGLIVSSILIPAAISSFLAGRVADVLGRPPAIAIGSAIFGLGAAIEAAAVHLGMFVAGRVVAGIGEGLYLGTLVVYICEISPARHRGSLTTGPQLLITSGLVAGFFTCYSSVKIVTTLSWRLPFILLASYSATFAVIAYVFLPPSPRWLADVYGQNTTAIDAAWDRLGVLHADREDMPQPNEREEPKTRSKMLDVLSAEARPGFLLGIFLMGMQQLSGIDGVLYYAPLLFQQAGLTSAGDTFLASGVSAIVICAVTIPATIWADSWSRRRNTIYGGIGMATAMFVIGGLYAGDAVHSYGPGRWVVVVSIYIYTVIFSISWAVAVKIYAAEIQPQKTRASATSLAHGSNWVTNFLVALITPTLLANTSYGAYFLFGSCTLATAIVCWFFMPETRGRTLAEIQQALRASRSTGVETPATALWRRARRAPAITVTEN bitunicate_ascomycetes Arthroderma_gypseum_CBS_118893 Arthroderma_gypseum_CBS_118893 XM_003173748 NA Cuomo,C.,_Henn,M.R.,_Jaffe,D.,_Young,S.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Alvarado,L.,_Kodira,C.D.,_White,T.C.,_Oliver,B.G.,_Graser,Y.,_Abdel-Rahman,S.,_Gurr,S.J.,_Martinez-Rossi,N.,_Summerbell,R.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1467 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003345199).COMPLETENESS:_incomplete_on_both_ends. NA 15-DEC-2010 Arthroderma_gypseum_CBS_118893_H(+)-myo-inositol_cotransporter_(MGYG_03968)_mRNA,_complete_cds. NA dermatophytes /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Arthroderma_gypseum_E4UUJ9_ARTGP.gb Arthroderma 315048842 Unpublished fungi XM_003173748 NA NA Onygenales sac_fungi NA 1467 NA mRNA NA CBS_118893 NA Nannizzia_gypsea NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 535722 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Arthrodermataceae,_Arthroderma The_Genome_Sequence_of_Arthroderma_gypseum_CBS_118893 NA XM_003173748.1 ATGAAGCTCTCTAACATATTCCAGAGGCCGCCTCGTTATGTCGTGGCTAGTATTTTGTGCTCCCTCGGGGGGTTTTTGTTCGGAGTTGACACCGCAATCATTGGCCCAGTGACTGTGATGCAGTCATTTACCAGTGCATTCGGCCATCCAAGTCCCACGCTTCATGGACTGATTGTATCTTCGATTCTTATCCCTGCCGCCATTTCCTCCTTTCTAGCTGGCCGTGTTGCAGATGTGCTCGGCCGGCCTCCAGCGATCGCCATCGGTTCTGCTATTTTCGGCCTTGGTGCTGCGATTGAGGCTGCTGCGGTGCACCTCGGCATGTTTGTTGCTGGCCGAGTGGTTGCCGGTATTGGTGAAGGCCTCTATTTGGGCACCTTGGTCGTGTACATATGTGAAATCTCGCCCGCCAGGCACCGTGGAAGCCTCACCACTGGACCCCAGCTTCTCATCACTTCTGGGCTCGTGGCTGGTTTCTTTACATGCTACAGCTCTGTGAAAATTGTCACTACCCTCTCCTGGCGGCTGCCATTTATCCTCCTTGCTTCATACTCTGCTACCTTTGCAGTGATTGCCTACGTGTTTTTGCCACCTTCTCCAAGATGGCTAGCTGATGTATACGGCCAAAACACAACTGCAATTGACGCAGCATGGGATCGTTTGGGTGTTTTGCATGCTGACCGAGAAGATATGCCTCAGCCAAATGAGAGAGAGGAGCCTAAGACAAGATCTAAGATGCTCGATGTCCTTTCTGCCGAAGCCCGACCAGGTTTCCTACTTGGTATCTTCCTTATGGGTATGCAGCAGCTAAGCGGAATTGATGGTGTTCTTTATTATGCCCCTTTACTGTTCCAACAAGCTGGCCTCACTTCCGCAGGCGATACATTCCTTGCATCAGGTGTCTCCGCTATAGTTATTTGTGCTGTTACAATCCCTGCTACGATCTGGGCAGATAGCTGGAGTCGTCGCCGTAACACAATATATGGTGGGATTGGAATGGCCACAGCCATGTTTGTTATTGGTGGGCTGTACGCTGGAGATGCAGTACATTCCTACGGCCCTGGGCGCTGGGTTGTTGTCGTCTCTATTTACATCTATACGGTCATCTTTTCTATCTCTTGGGCTGTTGCCGTCAAAATTTATGCTGCTGAAATCCAGCCACAGAAAACTAGAGCAAGCGCTACCAGCCTCGCCCACGGTAGCAACTGGGTCACTAACTTCCTCGTCGCCCTCATCACGCCAACACTGCTCGCAAATACTAGTTACGGCGCCTATTTTCTTTTCGGCAGCTGTACCCTTGCCACAGCTATAGTTTGTTGGTTCTTTATGCCTGAAACTCGCGGCCGTACACTGGCTGAAATACAACAGGCCCTTCGTGCTAGTCGTTCTACTGGGGTTGAGACTCCTGCAACCGCGCTCTGGAGAAGGGCACGGAGAGCCCCTGCTATTACAGTGACGGAGAATTGA > 58 MGYG_07455 NA hypothetical_protein XP_003170210.1 NA MASEKNDIDSINVGTTRISVGESDGENAPITDVFQNAKAATDKERRMTLLQGIRLYPKAVAWSILISTCIVMEGYDISLISNFYAFEQFNQKFGVQLEDGSYQVPAPWQAGLSNGAAVGEIFGLFLNGWVSERFGYRWTILGSLAWLAAFISLFFTAQNVQTLLVGEILCGIPWGVFQTLTITYASEVCPVALRGYLTTYVNFCWGLGQLIGIGVIRSMLDRKDEWSFRIPYALQWMWPLPLALAIYMAPESPWWLVRKGRIADAKRSLLRLTSRTGETDFNADETIAMMLHTTALEARITRGATYWDCFKGTDLRRTEIVCMAWAMQNLSGNSFSNYSTYFLEQAGLSSSHAYSFAMGQYAINMVGVFGAWGLMSFGIGRRTLYLAGLCGLCAMLMVMGFLGLVPQSHRNAGSLATGSMMIVWALFYQLSVGTVTYSIVSELSTRRLQIKTIVLGRNLYNIVAIICNVLTPFMLNPSAWDWGNYAGFFWGGICFCCVVYSYFRLPEPQGRSFAELDVLFERGISARKFASTQVDVFSEEVATNVIDTYKEKDSGNTEP bitunicate_ascomycetes Arthroderma_gypseum_CBS_118893 Arthroderma_gypseum_CBS_118893 XM_003170162 53..1732 Cuomo,C.,_Henn,M.R.,_Jaffe,D.,_Young,S.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Alvarado,L.,_Kodira,C.D.,_White,T.C.,_Oliver,B.G.,_Graser,Y.,_Abdel-Rahman,S.,_Gurr,S.J.,_Martinez-Rossi,N.,_Summerbell,R.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1680 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003345195).COMPLETENESS:_incomplete_on_the_3_end. NA 15-DEC-2010 Arthroderma_gypseum_CBS_118893_hypothetical_protein_(MGYG_07455)_mRNA,_complete_cds. NA dermatophytes /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Arthroderma_gypseum_E4V373_ARTGP.gb Arthroderma 315041666 Unpublished fungi XM_003170162 NA NA Onygenales sac_fungi NA 1680 NA mRNA NA CBS_118893 NA Nannizzia_gypsea NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 535722 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Arthrodermataceae,_Arthroderma The_Genome_Sequence_of_Arthroderma_gypseum_CBS_118893 NA XM_003170162.1 ATGGCGTCTGAAAAGAATGATATTGATTCTATCAATGTCGGCACTACTCGGATATCTGTTGGAGAGAGTGACGGTGAAAATGCGCCGATAACAGATGTCTTTCAGAATGCGAAAGCTGCTACAGATAAGGAGCGAAGAATGACCCTGCTACAGGGAATAAGGCTTTATCCGAAGGCAGTAGCATGGAGCATATTGATCTCAACTTGCATTGTCATGGAAGGCTACGACATCAGTCTGATAAGCAACTTCTACGCTTTCGAGCAATTCAACCAGAAGTTTGGAGTACAACTGGAAGATGGGTCTTATCAAGTTCCAGCTCCTTGGCAGGCTGGTCTCAGCAATGGTGCAGCCGTGGGAGAGATATTCGGCTTGTTCTTGAATGGATGGGTATCGGAACGTTTTGGCTATCGGTGGACAATCCTAGGATCTCTGGCCTGGTTGGCTGCCTTCATATCCCTCTTCTTTACTGCCCAAAATGTACAAACTCTCCTCGTGGGTGAAATCCTCTGTGGCATTCCGTGGGGTGTCTTTCAGACCCTTACCATCACCTATGCCTCTGAGGTGTGCCCTGTGGCGCTGCGTGGTTACCTGACAACCTATGTTAATTTCTGCTGGGGACTTGGGCAGCTAATAGGCATAGGAGTAATCCGGTCGATGCTAGATCGGAAAGACGAATGGTCCTTCAGGATACCCTATGCACTACAATGGATGTGGCCGTTACCCCTCGCTCTCGCAATCTACATGGCCCCAGAGTCACCGTGGTGGTTGGTTAGGAAGGGTCGCATTGCAGATGCGAAACGCTCGCTTCTCCGGCTGACTAGTCGGACTGGAGAGACTGATTTCAATGCCGATGAGACCATTGCGATGATGCTTCATACAACAGCTTTGGAGGCTAGGATTACACGTGGAGCCACCTACTGGGACTGTTTCAAGGGAACAGACCTTCGTCGAACGGAAATCGTATGCATGGCCTGGGCTATGCAAAACCTTAGCGGCAACTCCTTTTCGAATTATTCGACGTACTTCTTGGAACAGGCGGGATTATCGTCATCCCATGCCTACTCGTTCGCCATGGGACAGTACGCTATCAACATGGTTGGAGTCTTCGGTGCTTGGGGCCTAATGTCTTTCGGGATTGGTCGGAGGACTCTATACCTTGCTGGTCTATGTGGTCTTTGCGCCATGCTGATGGTGATGGGTTTCCTCGGCCTAGTACCACAGTCACACAGGAACGCGGGATCCCTTGCTACCGGAAGTATGATGATCGTTTGGGCTTTGTTCTATCAGCTCTCTGTTGGCACCGTTACTTATTCCATTGTCTCGGAACTTTCAACACGGAGACTCCAGATAAAGACAATCGTACTGGGCCGAAACTTATACAACATTGTTGCAATTATATGTAATGTTTTGACTCCGTTTATGCTCAACCCTAGTGCATGGGATTGGGGAAATTATGCCGGTTTCTTTTGGGGTGGCATCTGCTTCTGCTGCGTCGTCTACAGTTACTTCCGTCTCCCTGAACCGCAAGGACGATCCTTTGCTGAGCTCGATGTCTTATTTGAGCGTGGGATTAGCGCAAGGAAGTTTGCGTCTACTCAGGTTGATGTGTTCAGCGAAGAGGTGGCAACTAATGTGATTGATACATATAAAGAGAAAGATTCAGGGAACACTGAACCCTAG > 59 MGYG_01486 NA MFS_phospholipid_transporter_Git1 XP_003177410.1 NA MADPAVTSKSDSSIEAGSNAGQEQPLENLEKSRWERSWPTIACGAGLFSDGYLNNVIGSVNTILSTIYPDSYNESSAVKNVPSIAFAGTVVGQLLFGYISDHYSRKWSLMASTIILIIFAALCAGAYGAGGSQTGLFAALTAYRFFLGIGIGGEYPAGSVAAAESTGGLKHGHRNRWFIMFTNFQIDFGFVVSALVPMILVLIFTENHLRAAWRVMLGLGVIPPLTLLWLRLKLNEPEEFNRERMHKYPVWLIVKFYWKRLSIVSLIWFIYDFSAYSFGIYSSVWLKIVLGSSAPLWKTFGWNTVLNLFYIPGSFAGAWVSDWIGPRHALALGVGLQGILGFIMAGCYKYLATPQNVAGFVVVYGIFLSLGELGPGDNIGLVASKTSATAIRGQYYGIAAAMGKIGAFVGTYVFPIIKDNAPNPIRAGQDPFFVSSALCLFSAALAVFLLPHIGQDTITYEDMRFRQYLQENGYDTSTMGNQAAAPVSHSQEKN bitunicate_ascomycetes Arthroderma_gypseum_CBS_118893 Arthroderma_gypseum_CBS_118893 XM_003177362 NA Cuomo,C.,_Henn,M.R.,_Jaffe,D.,_Young,S.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Alvarado,L.,_Kodira,C.D.,_White,T.C.,_Oliver,B.G.,_Graser,Y.,_Abdel-Rahman,S.,_Gurr,S.J.,_Martinez-Rossi,N.,_Summerbell,R.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1485 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003345201).COMPLETENESS:_incomplete_on_both_ends. NA 15-DEC-2010 Arthroderma_gypseum_CBS_118893_MFS_phospholipid_transporter_Git1_(MGYG_01486)_mRNA,_complete_cds. NA dermatophytes /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Arthroderma_gypseum_E5R169_ARTGP.gb Arthroderma 315056070 Unpublished fungi XM_003177362 NA NA Onygenales sac_fungi NA 1485 NA mRNA NA CBS_118893 NA Nannizzia_gypsea NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 535722 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Arthrodermataceae,_Arthroderma The_Genome_Sequence_of_Arthroderma_gypseum_CBS_118893 NA XM_003177362.1 ATGGCGGACCCGGCGGTCACCTCAAAGAGTGACTCGTCTATCGAGGCAGGGTCCAACGCAGGGCAAGAGCAACCTCTAGAGAATCTAGAGAAGTCGAGATGGGAGCGTAGCTGGCCGACGATAGCTTGCGGCGCTGGCCTCTTCTCTGATGGGTATCTGAACAACGTTATTGGCTCCGTCAACACCATTCTCTCTACGATCTATCCAGATTCATACAACGAATCTTCCGCCGTTAAAAATGTTCCATCGATTGCTTTCGCTGGTACGGTTGTTGGCCAGCTCCTGTTCGGCTATATAAGCGACCACTATTCCCGCAAATGGTCGCTGATGGCCTCGACTATCATCCTGATCATTTTCGCCGCGTTATGCGCTGGTGCTTATGGTGCAGGAGGCAGCCAGACAGGCCTATTTGCAGCCCTGACAGCTTACCGTTTCTTTCTCGGGATCGGTATAGGCGGAGAATATCCTGCCGGCAGCGTCGCAGCTGCTGAAAGCACAGGAGGGCTGAAACATGGCCACCGCAACCGTTGGTTCATCATGTTTACGAATTTCCAGATTGACTTTGGATTTGTTGTTTCTGCTCTGGTGCCTATGATCTTGGTCTTGATCTTTACTGAGAATCATCTACGGGCTGCGTGGAGAGTGATGTTGGGCCTCGGAGTGATTCCCCCGTTAACTCTCCTTTGGCTACGGCTAAAGCTGAATGAGCCTGAAGAGTTCAACAGGGAACGTATGCATAAGTATCCCGTATGGCTTATTGTCAAATTCTACTGGAAACGACTGTCGATTGTCTCCCTCATCTGGTTTATTTATGACTTCTCTGCATACTCCTTCGGCATCTACTCGTCCGTCTGGCTGAAAATCGTCTTGGGCTCATCGGCTCCTCTATGGAAGACCTTTGGATGGAACACTGTTCTCAACCTCTTCTACATTCCTGGTTCATTTGCTGGTGCCTGGGTAAGTGATTGGATAGGACCAAGACACGCCCTCGCTCTAGGAGTCGGGCTTCAGGGTATCTTGGGCTTTATCATGGCTGGCTGTTATAAGTACCTCGCTACTCCGCAAAACGTTGCTGGCTTCGTGGTGGTATATGGAATATTTTTGTCGTTGGGTGAGCTTGGGCCGGGAGACAACATTGGTCTGGTTGCATCTAAAACTAGCGCGACTGCTATCAGAGGGCAGTACTATGGTATTGCTGCAGCTATGGGCAAAATTGGAGCCTTCGTAGGAACATACGTCTTTCCCATCATCAAAGACAATGCACCAAATCCGATACGAGCTGGACAGGATCCATTTTTTGTGTCCAGTGCTCTATGCTTGTTCAGTGCAGCATTGGCCGTGTTTTTGTTGCCGCATATTGGACAGGATACGATCACCTATGAAGATATGCGGTTCAGACAGTATCTCCAAGAGAACGGGTATGACACCAGCACGATGGGAAATCAAGCGGCAGCCCCGGTGAGCCATAGTCAAGAGAAGAACTGA > 60 MCYG_04768 NA siderochrome-iron_uptake_transporter XP_002847031.1 NA MAVESEKAVAPADGGDQQQQQQQVNGSGEPVILGKKSPGVMRVEVISSHMTFVDRILLFIGIFVLAYAYGLDGGLRFTYQTYATASYSSHSLLATVNVLRAVIAAAAQPTAAKMADVFGRAEVILFTIVFYVVGTIVEATSDGVKAFAAGAVLYQIGYTSILLLVEVLIADVTSLRARLFCSYIPATPFIINTWVSGDITSAVITNSTWQWGIGMFAIIYPVCAIPCITLLYIVQRRAKRAGALENYRTPFQIYGGKKIVTAMFWQLDVIGIILLLGVFALILVPFTIAGGVETQWRTAKVIAPLVIGVLLIPVWLYWESTCLHPMVPFRLLKDRGVWGALGIAIMLNTAWYLQGDFLYTVLVVAFNESIKSATRITALYSFTSVLTGVVMGVFVYFFRRLKLVIVAGTILFMVAFGILIYYRGGSSSSSHAGIIGAQVLLGIAGGMFPYPAQTSIQAATKHEHVAAITGLFLASYNIGSALGNTISGSIWNQVLPQALMDRISNQTLAAEIYKDPFPFATANPIGTPDRDHAVDAYKHVQRLLCITGICLSVLLIAFSLVLRDPVLGQEQSLGFAEKDTSDEEGTPAGSSHSEP bitunicate_ascomycetes Arthroderma_otae_CBS_113480 Arthroderma_otae_CBS_113480_(anamorph:_Microsporum_canis_CBS_113480) XM_002846985 NA Cuomo,C.,_Henn,M.R.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Guigo,R.,_Borodovsky,M.,_White,T.C.,_Oliver,B.G.,_Graser,Y.,_Abdel-Rahman,S.,_Gurr,S.J.,_Martinez-Rossi,N.,_Summerbell,R.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1788 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003299166).COMPLETENESS:_incomplete_on_both_ends. NA 27-MAY-2010 Arthroderma_otae_CBS_113480_siderochrome-iron_uptake_transporter,_mRNA. NA dermatophytes /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Arthroderma_otae_C5FPZ6_ARTOC.gb Arthroderma 296813386 Unpublished fungi XM_002846985 NA NA Onygenales sac_fungi NA 1788 NA mRNA NA CBS_113480 NA Nannizzia_otae_A._Haseg._&_Usui_1974 NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 554155 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Arthrodermataceae,_Arthroderma Annotation_of_Microsporum_canis_strain_CBS_113480 NA XM_002846985.1 ATGGCTGTCGAGTCGGAAAAGGCTGTGGCGCCTGCCGATGGCGGAGACCAGCAGCAGCAGCAACAGCAGGTTAATGGGTCCGGAGAGCCTGTTATACTGGGCAAGAAGAGTCCCGGAGTCATGAGGGTCGAGGTGATATCCTCGCATATGACGTTTGTCGATCGTATCCTTCTCTTCATTGGCATCTTCGTCCTCGCCTATGCCTATGGGCTCGATGGAGGACTTCGGTTCACTTATCAGACATATGCCACGGCCTCCTATAGTTCTCACAGTCTTTTGGCCACCGTCAATGTTCTGCGTGCCGTCATCGCCGCTGCTGCTCAGCCTACCGCCGCCAAGATGGCCGATGTCTTTGGTAGGGCCGAGGTGATTCTCTTTACCATCGTATTCTATGTCGTTGGGACCATCGTTGAAGCCACTTCCGATGGCGTCAAGGCCTTTGCCGCCGGGGCCGTGCTCTACCAGATCGGCTACACGTCTATCTTACTTCTGGTCGAGGTTCTCATCGCGGACGTCACCTCCCTTCGCGCTCGTCTGTTCTGCTCTTACATCCCGGCCACCCCATTCATCATCAACACCTGGGTCAGCGGTGACATCACCAGTGCTGTCATCACCAACTCTACATGGCAATGGGGCATCGGAATGTTCGCCATCATCTACCCAGTATGCGCCATCCCGTGCATAACGTTACTATACATTGTCCAAAGGCGCGCAAAGCGAGCCGGTGCTCTGGAAAACTACAGGACACCTTTCCAAATATACGGTGGCAAGAAGATCGTCACAGCCATGTTCTGGCAACTAGACGTTATCGGCATCATCCTACTCCTCGGCGTCTTTGCTCTCATCCTCGTCCCCTTCACCATCGCAGGAGGCGTAGAAACCCAGTGGAGGACAGCAAAGGTCATCGCACCACTCGTTATTGGCGTCCTTCTCATCCCAGTCTGGCTCTACTGGGAATCCACATGTTTACACCCCATGGTTCCTTTCAGGCTGCTCAAAGATCGCGGAGTATGGGGCGCTCTTGGAATCGCCATCATGCTCAACACCGCATGGTATCTTCAGGGAGATTTCCTCTACACCGTCCTGGTCGTTGCGTTTAACGAATCGATCAAGAGCGCTACGCGAATCACAGCCTTGTACAGCTTTACTTCCGTCTTGACAGGGGTTGTAATGGGTGTATTCGTTTACTTTTTCCGACGACTGAAGCTTGTTATCGTTGCTGGAACGATTCTGTTCATGGTCGCTTTTGGTATTCTGATTTACTACCGTGGAGGATCATCCTCTTCAAGCCATGCTGGCATAATCGGTGCCCAAGTCCTTCTTGGAATCGCCGGCGGCATGTTCCCATACCCTGCGCAGACATCCATCCAGGCCGCAACCAAGCACGAACACGTCGCCGCCATCACCGGTCTCTTCTTGGCGTCCTATAACATCGGTTCAGCCCTTGGAAACACCATCTCAGGGTCCATCTGGAACCAGGTTCTCCCTCAAGCCCTAATGGACCGTATATCCAACCAGACTCTCGCCGCTGAAATCTACAAAGACCCTTTCCCTTTTGCTACCGCCAACCCTATCGGTACTCCAGACAGGGACCATGCCGTCGACGCATACAAGCATGTTCAGCGCCTGCTTTGTATTACGGGTATCTGCCTCTCTGTTCTGCTCATTGCTTTCTCGCTCGTGCTGCGTGATCCCGTTCTTGGACAGGAGCAGAGTCTTGGCTTTGCTGAGAAGGATACTTCTGATGAAGAGGGCACACCTGCAGGGTCTAGTCATTCCGAGCCCTAG > 61 MCYG_08309 NA phosphate_transport_protein XP_002843226.1 NA MKMPVSFKVKNRTVNFDYIPIFAVGMIIPMLAHVYWQGTMPTHIETGMRVATLVGTIIGQFIFGVLADLYGRRKMYGFELLVVTISTIGVAMAADGASGSMSIVAWLIVWRFIMGVGIGGDYPLSAVITSEFAPTRSRGRMISTVFYMQPCGYLAATLVALIAIVAHRGSIPHTIPTRIEDIVSCMDDESCRRAMDSVWRWVIGIGAVPSAIAIFFRFSIPESPRYTMEVLNRPDEALEDVNEMGWQRVPQKTITPGDVEMQLPPPLQQQGQPQTQSLPESPHVQREKPPSVSHRPVSAATQENHLVSNEWSHFNPHKSTSRATDAASQHSPRRVSRTHTVSSANSISGSSLSSSTNDGDAADSTLIDDDFAPPTKEASQWTHFRTGFYQHFITNGHWPTLLGTALAWACFDFAFYALGPNSYKVVGKIFNEKTLCFPSIAKQGGKMPHPCNIPNRSLYEDAIQNTWHSLIIVSIGSLTGGLGMIKIIKRSSPRTIQLYGFIVLAVIFITIGICFQVVNRSISVPLIAFLYVLSQVFFEIGPNVTTFMIPAELFPTRFRCTAHGISAMSGKIASVLVQVFVAYAPIGPYKPSDNNPSDINSTDTKSEWLGYVVIIFAAFMVLGAAVTKWLIPEARQEDGRARPLEDKDRGSGSRGSWGQPCYRLWNQWCGSG bitunicate_ascomycetes Arthroderma_otae_CBS_113480 Arthroderma_otae_CBS_113480_(anamorph:_Microsporum_canis_CBS_113480) XM_002843180 NA Cuomo,C.,_Henn,M.R.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Guigo,R.,_Borodovsky,M.,_White,T.C.,_Oliver,B.G.,_Graser,Y.,_Abdel-Rahman,S.,_Gurr,S.J.,_Martinez-Rossi,N.,_Summerbell,R.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:2019 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003299162).COMPLETENESS:_incomplete_on_both_ends. NA 27-MAY-2010 Arthroderma_otae_CBS_113480_phosphate_transport_protein,_mRNA. NA dermatophytes /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Arthroderma_otae_C5G037_ARTOC.gb Arthroderma 296804755 Unpublished fungi XM_002843180 NA NA Onygenales sac_fungi NA 2019 NA mRNA NA CBS_113480 NA Nannizzia_otae_A._Haseg._&_Usui_1974 NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 554155 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Arthrodermataceae,_Arthroderma Annotation_of_Microsporum_canis_strain_CBS_113480 NA XM_002843180.1 ATGAAGATGCCGGTTTCGTTCAAGGTTAAGAACCGCACGGTTAACTTTGATTATATTCCGATCTTCGCTGTCGGGATGATTATTCCCATGCTAGCCCATGTTTACTGGCAGGGCACCATGCCCACACATATCGAAACTGGCATGAGGGTGGCCACTCTCGTTGGCACAATTATCGGACAGTTCATTTTCGGTGTACTCGCCGATCTCTACGGGCGACGGAAAATGTACGGCTTCGAGCTTCTAGTTGTTACCATTTCGACTATCGGTGTTGCCATGGCAGCTGACGGTGCATCCGGCTCTATGAGTATCGTTGCATGGTTAATCGTCTGGCGCTTCATCATGGGCGTCGGTATCGGTGGTGACTACCCGCTTTCCGCTGTCATTACTTCTGAATTTGCTCCAACCCGTTCCCGCGGTCGGATGATCTCAACGGTCTTTTATATGCAGCCCTGCGGGTATCTCGCTGCGACCCTCGTGGCGTTGATAGCTATTGTGGCGCACCGTGGCAGCATCCCACACACTATCCCTACACGGATTGAAGATATTGTATCCTGTATGGATGATGAAAGCTGTCGACGAGCGATGGATAGTGTGTGGCGGTGGGTTATTGGTATTGGTGCGGTTCCATCAGCAATTGCCATTTTTTTCAGGTTCAGTATTCCGGAATCCCCTCGGTACACAATGGAGGTGCTGAACCGACCTGATGAAGCTCTCGAGGATGTTAATGAGATGGGCTGGCAGCGGGTTCCCCAAAAGACAATTACCCCTGGTGATGTTGAGATGCAACTCCCACCTCCATTACAGCAACAAGGCCAACCCCAAACACAGTCTTTACCAGAGAGCCCTCACGTACAAAGAGAAAAGCCACCAAGTGTTTCTCATAGACCCGTCTCGGCCGCTACACAAGAAAATCACCTTGTCTCCAATGAATGGAGCCATTTTAATCCTCACAAAAGCACTTCACGGGCAACGGACGCGGCCTCGCAGCACTCACCTCGTCGTGTCTCACGCACACACACCGTTTCGAGTGCGAATTCTATCTCAGGCTCATCTTTATCTTCTTCCACAAACGATGGTGATGCCGCTGATAGCACGCTGATAGATGATGATTTCGCTCCTCCTACGAAGGAGGCTAGCCAGTGGACTCATTTTCGCACTGGCTTCTACCAGCATTTCATTACCAACGGTCACTGGCCGACTCTCCTCGGCACCGCCCTGGCCTGGGCTTGCTTTGACTTTGCCTTCTATGCTCTAGGGCCTAATTCATACAAAGTTGTTGGGAAGATCTTCAACGAAAAGACTCTCTGCTTTCCTAGCATAGCCAAACAAGGGGGCAAGATGCCGCATCCTTGTAACATTCCAAACCGCAGCTTGTACGAAGATGCCATTCAGAACACATGGCACTCGCTTATTATCGTCTCCATAGGCTCTCTAACTGGTGGCCTGGGTATGATTAAGATTATAAAACGCAGCTCCCCCCGCACCATTCAACTCTACGGCTTCATCGTGCTGGCTGTGATCTTTATCACCATTGGAATCTGCTTCCAAGTTGTTAATAGGTCTATCTCTGTACCCCTAATTGCATTCCTCTACGTCCTATCGCAAGTTTTCTTTGAGATAGGCCCCAACGTTACAACTTTCATGATTCCCGCAGAGTTATTCCCGACCCGCTTCCGTTGCACTGCCCACGGTATCTCTGCGATGTCTGGGAAAATTGCATCTGTCCTGGTGCAGGTATTCGTGGCTTATGCACCTATCGGCCCCTATAAACCATCCGATAACAACCCCTCTGATATCAATTCCACAGACACAAAATCTGAATGGCTGGGCTACGTGGTTATCATTTTTGCGGCGTTTATGGTACTGGGAGCTGCAGTTACAAAGTGGCTTATTCCCGAGGCAAGACAAGAGGACGGCCGCGCACGGCCACTGGAAGACAAAGACAGAGGCTCCGGTTCCCGAGGATCCTGGGGTCAACCCTGCTACCGACTGTGGAATCAATGGTGTGGTTCCGGGTGA > 62 AGOS_ADR091W Syntenic_homolog_of_Saccharomyces_cerevisiae_YDL194W_(SNF3)_and_YDL138W_(RGT2) ADR091Wp NP_984187.2 NA MLKSVEKLTLPQVISQRLTFHYRLRRKPEEIEENCISSETSDEKHSKGCNDQKNASHYEQPVMVTDLRDDSEGFSIQETELERPAMRQSNKMSILVGIFVAVGGFLYGYDTGLINSITEMSFVKKHFAPNHVNFTSMEMSILVSFLSLGTFIGALAAPLLADSYGRKSTVIFSTFIVFLVGTSLQVSATSMALLVAGRVASGVAVGLISVVVPLYQGEAAQKWCRGAIICTYQWAITWGLLVSSAVSQGTYLRNDASSYRIPIALQYVWCIILGSGMLLLPESPRYYVLRDQLDKAALSLSFLRGVPHDDAGLLEELVEIKANYDYEMSLKSSSYLDCFRTSEHRPKQQIRMLSGILLQAFQQFSGINFIFYYGVNFFSSTGISKSYLVSFVTYAVNVVFNIPGLFLVEYAGRRKLLLVGGVLMTISNFIIAIVGVSTDSVIAKKVMIVFICMFIAAFSATWGGVVWVMSAEMYPLGVRSKCAAICAASNWLVNFVCAMITPYLIDISSYTSRLGSTIFFVWGSLNAIGVMVVYLTVYETSGLTLEEINELYRRCPSSLASCAWNRRIKSSPEDYHLTVTGRCAPSEHQDHVDLGNGLCLATYHRAPPSIISESSNSSSDSVVNSGAGAGGPAAAPAGINAYMSDLMNNIVVNTHSTPAAGTST Saccharomycetes Ashbya_gossypii_ATCC_10895 Ashbya_gossypii_ATCC_10895_(Eremothecium_gossypii_ATCC_10895) NM_209540 NA Dietrich,F.S.,_Voegeli,S.,_Brachat,S.,_Lerch,A.,_Gates,K.,_Steiner,S.,_Mohr,C.,_Pohlmann,R.,_Luedi,P.,_Choi,S.,_Wing,R.A.,_Flavier,A.,_Gaffney,T.D._and_Philippsen,P. NA 0:1995 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_005785).On_Aug_5,_2010_this_sequence_version_replaced_gi:47073157.This_genome_has_been_completely_resequenced_to_high_accuracy_(derf)and_reannotated._Gene_names_have_been_maintained,_though_some_geneshave_been_added,_and_many_protein_sequences_have_been_corrected.COMPLETENESS:_incomplete_on_both_ends. NA 18-JAN-2011 Ashbya_gossypii_ATCC_10895_ADR091Wp_(AGOS_ADR091W)_mRNA,_complete_cds. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ashbya_gossypii_Q75A29_ASHGO.gb Nematospora 302307504 Science_304_(5668),_304-307_(2004) fungi NM_209540 NA NA budding_yeasts sac_fungi 15001715 1995 IV mRNA NA ATCC_10895 NA Nematospora_gossypii NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 284811 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Eremothecium The_Ashbya_gossypii_genome_as_a_tool_for_mapping_the_ancient_Saccharomyces_cerevisiae_genome NA NM_209540.2 ATGCTGAAAAGTGTTGAGAAGTTAACACTTCCACAAGTAATATCACAGAGGCTTACTTTCCACTATCGACTGAGGCGCAAGCCTGAGGAGATAGAGGAGAACTGCATCTCATCCGAGACCTCCGATGAGAAGCACTCGAAGGGCTGCAACGATCAGAAGAATGCAAGCCACTATGAGCAGCCTGTGATGGTGACCGATTTGAGAGATGATTCAGAAGGGTTTTCCATCCAGGAGACCGAACTAGAACGGCCAGCGATGCGACAGTCTAATAAGATGTCAATTCTGGTGGGCATATTTGTTGCGGTCGGTGGCTTTCTATATGGGTACGATACCGGCCTCATTAACAGTATCACCGAGATGAGCTTCGTCAAGAAGCATTTTGCACCCAATCATGTCAACTTTACCTCGATGGAGATGTCCATACTTGTCTCTTTCCTGTCACTTGGGACCTTCATTGGTGCACTTGCGGCCCCGCTGCTGGCAGACTCCTACGGAAGAAAATCGACTGTCATATTCAGTACATTCATAGTGTTCTTGGTGGGCACGTCGCTGCAGGTCAGCGCAACTAGTATGGCGCTTCTAGTGGCAGGTCGTGTTGCCTCCGGGGTGGCTGTGGGACTAATATCTGTGGTTGTGCCGTTATACCAAGGCGAAGCGGCGCAGAAATGGTGTCGTGGTGCCATTATCTGTACATATCAGTGGGCCATAACCTGGGGGTTGCTTGTCTCGAGCGCTGTTTCTCAGGGCACATATCTGAGGAACGACGCCTCGTCCTACAGAATACCAATTGCGCTGCAATACGTGTGGTGCATCATTCTTGGGTCGGGAATGCTTCTGCTGCCAGAGAGCCCACGTTATTACGTCCTGAGGGACCAGCTGGACAAGGCCGCTCTATCCCTGTCCTTCTTGCGAGGAGTGCCGCACGATGACGCCGGCCTCCTGGAAGAACTGGTAGAGATCAAGGCGAACTATGACTATGAGATGTCGTTGAAGTCATCTTCGTATCTTGACTGTTTTCGAACTAGTGAGCACAGACCCAAGCAGCAAATTAGGATGCTTTCAGGGATTTTGTTGCAGGCATTCCAGCAGTTTTCGGGCATCAATTTCATTTTCTATTACGGGGTCAACTTCTTCAGCAGCACAGGCATTAGCAAGAGCTATCTTGTATCGTTCGTTACTTACGCCGTAAATGTCGTCTTCAACATACCCGGTCTATTTCTCGTCGAGTATGCTGGCCGCCGGAAGCTGCTTCTGGTCGGCGGCGTGCTGATGACCATCTCCAATTTCATCATCGCAATAGTGGGTGTGTCCACCGATTCAGTTATCGCTAAGAAGGTTATGATCGTGTTCATCTGCATGTTCATCGCCGCATTCTCCGCAACTTGGGGAGGCGTCGTCTGGGTCATGTCCGCCGAGATGTATCCGTTGGGCGTCCGCTCCAAATGCGCGGCCATCTGCGCGGCATCCAACTGGCTCGTTAACTTTGTCTGCGCGATGATTACCCCGTACCTCATTGATATAAGCTCCTACACGTCCCGCCTCGGTAGCACCATCTTCTTTGTCTGGGGTTCGCTCAACGCCATTGGCGTTATGGTCGTCTACCTGACTGTCTATGAGACCAGCGGTCTAACACTCGAAGAAATTAATGAACTCTACCGCCGCTGTCCATCCAGCCTGGCGTCCTGTGCATGGAACCGGCGTATCAAAAGTTCCCCAGAAGACTACCACCTCACCGTCACCGGCCGGTGCGCTCCCAGTGAACACCAAGACCATGTCGATCTCGGCAACGGTCTCTGTCTGGCCACGTATCACCGTGCCCCGCCTTCAATAATTTCGGAATCCTCCAATAGCAGTAGCGACAGCGTTGTCAATTCCGGCGCTGGCGCTGGCGGTCCCGCTGCCGCGCCTGCGGGCATCAACGCTTACATGTCTGACCTAATGAACAATATTGTCGTAAACACACATTCTACTCCCGCAGCAGGCACAAGTACATAG > 63 ACLA_052070 encoded_by_transcript_ACLA_052070A;_predicted_by_EVM2 MFS_monosaccharide_transporter,_putative XP_001272161.1 NA MGNNRYLGLQGSKLQLAIGVIAGMDFLLFGYDQGVTGGLLTLQSFIKYFPTIALNGEYFESLDSSQRSAQSTRQGIVVAAYNLGCFAGSIPTIWVGNWLGRRKTIFLGSLIMVVGAILQCTAYHLPQLIIGRLVTGFGNGMNTSTVPTWQSECCKSNHRGQLVMIEGAMITCGITISYWIDFGLLFADPSEVAWRFPLAFQIFFAAIILAFVMFLPESPRWLVLKGREDEAKNVLTALLGDDADETFVETEFTAIKATVLEMAKGSFRDMFTMTEDRHLHRTLLAYVNQMFQQISGINLITYYIPVVLEQQLGMTMINSRLIAACNGTEYFIASWIAVFTIEQFGRRSLMLFGAAGMSISMVILAITASMGNPQANIACAVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWIFNFMVVMITPVAFENIKYQTYIIFAVINAAIFPVVYFFYPETTRRSLEEMDRIFRKTKSVLSVVRVAREEPHMYGKKGELLRPLDDVEDHAMRRASVLNHNHKEAGDHSDENTSMEQVEQVEKA bitunicate_ascomycetes Aspergillus_clavatus_NRRL_1 Aspergillus_clavatus_NRRL_1 XM_001272160 NA Nierman,W.C. NA 0:1647 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001517099).COMPLETENESS:_incomplete_on_both_ends. NA 21-FEB-2008 Aspergillus_clavatus_NRRL_1_MFS_monosaccharide_transporter,_putative_(ACLA_052070),_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_clavatus_A1CIN0_ASPCL.gb Aspergillus 121708531 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001272160 NA NA green_and_blue_molds sac_fungi NA 1647 NA mRNA NA NRRL_1 NA Aspergillus_clavatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 344612 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001272160.1 ATGGGGAATAACCGGTACCTGGGCCTTCAGGGCTCCAAGCTCCAGCTTGCTATCGGTGTCATCGCTGGTATGGATTTCTTGCTGTTCGGTTATGATCAAGGTGTCACCGGCGGTCTTTTAACATTACAGTCCTTCATCAAATACTTCCCCACTATCGCGCTGAACGGCGAGTACTTTGAGAGCTTGGATAGCTCCCAGAGGAGCGCGCAGTCCACCCGCCAAGGTATCGTTGTTGCGGCCTACAATCTGGGATGTTTCGCTGGCTCTATTCCCACCATCTGGGTTGGCAACTGGCTGGGTCGGCGCAAGACCATCTTTCTTGGGTCCTTGATCATGGTGGTCGGAGCGATCCTGCAGTGCACCGCCTACCACCTTCCCCAGCTGATCATCGGTCGTCTGGTCACCGGGTTCGGAAACGGGATGAATACGTCGACGGTGCCCACCTGGCAATCCGAGTGCTGCAAGTCCAACCACCGTGGCCAACTGGTCATGATCGAGGGTGCGATGATCACCTGCGGTATCACCATCAGTTACTGGATCGACTTTGGTTTGCTGTTTGCGGACCCTAGCGAGGTGGCCTGGCGGTTTCCCTTGGCTTTCCAGATCTTCTTCGCGGCAATCATTCTGGCTTTTGTCATGTTCCTGCCCGAGTCGCCTCGCTGGCTCGTGCTCAAGGGCCGAGAGGATGAGGCTAAGAATGTTCTAACCGCGCTGCTGGGGGATGACGCCGACGAGACCTTTGTGGAGACCGAATTTACGGCCATCAAAGCCACCGTTCTGGAAATGGCCAAGGGTTCATTCCGCGACATGTTCACGATGACCGAGGACCGCCACCTCCACCGGACCCTTCTTGCCTACGTCAACCAGATGTTCCAGCAGATCAGCGGCATCAATCTGATCACCTACTACATTCCAGTCGTGCTCGAGCAGCAGCTGGGGATGACGATGATCAATTCGCGACTGATCGCTGCCTGCAACGGAACCGAATACTTCATTGCTTCCTGGATCGCCGTCTTCACCATCGAGCAGTTTGGTCGTCGTTCTCTGATGCTGTTCGGTGCGGCGGGTATGTCGATTTCCATGGTCATCCTGGCCATTACCGCCAGTATGGGCAACCCCCAGGCCAATATCGCCTGCGCCGTCTTCCTCTTTGTCTTCAACACGTTCTTTGCCATCGGCTGGCTGGGCATGACCTGGCTGTACCCTGCGGAGATTGTGCCTCTGAAGATCCGTGCCCCGGCCAATGCGCTGGCCACCTCGTCCAACTGGATCTTCAACTTCATGGTCGTCATGATCACCCCGGTTGCCTTTGAGAACATCAAATATCAGACCTACATCATTTTCGCTGTCATTAATGCGGCTATCTTCCCTGTCGTGTACTTCTTCTACCCCGAGACCACCCGACGATCCCTCGAAGAGATGGACAGGATTTTCCGCAAGACCAAGAGCGTCCTCTCGGTGGTGCGCGTCGCCCGCGAGGAGCCGCACATGTACGGCAAAAAGGGCGAGCTCCTGCGCCCTTTGGACGACGTCGAGGACCACGCCATGCGCCGTGCCAGCGTCTTGAACCACAACCACAAGGAGGCTGGCGATCACAGCGACGAGAACACGAGCATGGAGCAGGTGGAGCAGGTGGAGAAGGCCTAA > 64 ACLA_097360 encoded_by_transcript_ACLA_097360A;_predicted_by_EVM2 MFS_monosaccharide_transporter,_putative XP_001270224.1 NA MADAVTDSRVEAPVTWKTYMMCAFAAFGGIFFGYDSGYINGVMGMDYFITEFEGLDKATTDPDSFVLPSSKKSLITSILSAGTFFGALLAGDLADWFGRRITIVSGCVIFIIGVVLQTASTTVPLLVVGRLIAGFGVGFVSAIIILYMSEIAPRKVRGAIVSGYQFCITIGLMLASCVDYGTQNRTDSGSYRIPIGIQIAWALILGGGLLMLPESPRWFVKKGNLTGAAVALARVRGQPRDSEYIRTELAEIVANHEYEMQAIPQTGYFGSWINCFRGNIFHPNSNIRRTILGTSLQMMQQWTGVNFVFYFGTTFFKSLGTISDPFLISMITTIVNVCSTPISFYTMEKLGRRTLLLWGALGMVICQFIVAIIGTVDGGNKSAVSAEISFICIYIFFFASTWGPGAWVVIGEIYPLPIRSRGVALSTASNWLWNCIIAVITPYMVDKDKGDLKAKVFFIWGSLCACAFVYTYFIVPETKGLTLEQVDKMMEETTPRTSAKWKPHGTFAAEMGLTDKDMAEKTGEVVHQEV bitunicate_ascomycetes Aspergillus_clavatus_NRRL_1 Aspergillus_clavatus_NRRL_1 XM_001270223 NA Nierman,W.C. NA 0:1593 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001517095).COMPLETENESS:_incomplete_on_both_ends. NA 21-FEB-2008 Aspergillus_clavatus_NRRL_1_MFS_monosaccharide_transporter,_putative_(ACLA_097360),_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_clavatus_A1CML1_ASPCL.gb Aspergillus 121703919 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001270223 NA NA green_and_blue_molds sac_fungi NA 1593 NA mRNA NA NRRL_1 NA Aspergillus_clavatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 344612 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001270223.1 ATGGCGGACGCTGTCACCGACTCGCGCGTTGAGGCGCCAGTCACCTGGAAGACCTACATGATGTGTGCCTTTGCTGCCTTCGGTGGTATCTTCTTCGGTTATGATTCCGGTTACATCAACGGTGTCATGGGTATGGACTACTTCATCACCGAGTTCGAGGGCCTGGACAAAGCGACTACCGATCCCGACTCTTTCGTCCTCCCTTCTTCCAAGAAGTCTCTGATCACCTCCATCCTGTCCGCTGGTACCTTCTTCGGTGCTCTCCTTGCCGGTGACTTGGCCGATTGGTTCGGTCGTCGCATCACCATCGTCAGCGGCTGTGTCATCTTCATCATCGGTGTCGTTCTCCAGACCGCCTCCACCACCGTGCCTTTGCTCGTTGTTGGTCGTCTGATCGCCGGTTTCGGTGTCGGTTTCGTCTCCGCCATCATCATCCTGTACATGTCCGAGATCGCCCCCCGCAAGGTCCGTGGTGCCATCGTCTCCGGCTACCAGTTCTGCATCACCATCGGTCTGATGCTGGCCTCCTGCGTCGACTATGGCACCCAGAACCGCACCGACTCCGGCTCCTACCGTATCCCCATCGGTATCCAGATCGCCTGGGCCCTGATCCTCGGTGGTGGTCTGCTCATGCTCCCCGAGTCGCCCCGTTGGTTCGTCAAGAAGGGTAATCTCACCGGCGCTGCCGTCGCCCTCGCCCGTGTCCGTGGCCAGCCCCGCGACTCCGAGTACATCCGCACCGAGCTGGCCGAGATTGTCGCCAACCACGAGTATGAGATGCAGGCCATCCCCCAAACCGGCTACTTTGGCAGCTGGATCAACTGCTTCCGCGGCAACATCTTCCACCCCAACAGCAACATCCGCCGGACCATCCTGGGTACTTCTCTGCAGATGATGCAACAGTGGACTGGTGTCAACTTCGTCTTCTACTTCGGTACCACCTTCTTCAAGAGTCTGGGCACCATCAGCGACCCCTTCCTGATCAGCATGATCACCACCATCGTCAACGTCTGCTCCACTCCCATCTCCTTCTACACTATGGAGAAGCTTGGTCGTCGTACCCTGCTCCTGTGGGGTGCTCTGGGCATGGTTATCTGCCAGTTCATCGTGGCCATCATCGGTACCGTTGACGGCGGCAACAAGAGCGCCGTCAGCGCCGAGATCTCCTTCATCTGTATCTACATCTTCTTCTTCGCCAGCACCTGGGGTCCCGGTGCCTGGGTCGTTATCGGCGAGATCTACCCTCTGCCCATCCGATCCCGTGGTGTTGCTCTGTCTACCGCCTCCAACTGGCTCTGGAACTGCATCATCGCTGTCATCACCCCCTACATGGTTGACAAGGACAAGGGTGACCTCAAGGCCAAGGTCTTCTTCATCTGGGGTTCCCTTTGCGCCTGCGCCTTCGTCTACACCTACTTCATCGTGCCTGAGACCAAGGGTCTGACCCTGGAGCAGGTTGACAAGATGATGGAGGAGACCACTCCCCGTACCTCTGCCAAGTGGAAGCCCCACGGCACCTTCGCTGCTGAGATGGGTCTCACTGACAAGGATATGGCCGAGAAGACCGGCGAGGTTGTGCACCAGGAGGTTTAA > 65 ACLA_031090 encoded_by_transcript_ACLA_031090A;_predicted_by_EVM2 sugar_transporter XP_001269802.1 NA MGGAVDSSAAMDAAAQARRAALRGSSGMAGLVQNRKVFGIAMFACLGGLLYGYNQGVFSGVLTMYSFETHVWSPQPSLFQEDFLLILSQQMGDAVTNQTKKGWLTAILELGAWFGALYSGILCERISRKYTILLNVCIFCIGVVVQTTAGTSGAGSSHILGGRFVTGMGVGSLSMSVPMYNAEIAPPEVRGSLVAMQQLAITFGIMVRRQLSPSQTMRSCHTNRCHRINYGTNHIGGTGSAQKDTAWLLPLALQLVPAVVLGIGMIFMPFSPRWLVHHDREEEAKRVLMSLRGLSADDPLLQLEFLEIKAQSLFEKRTEKEKFPHLERTNTWSYIKLEAAGFASLFTTWPMFRRVMVATVTMTFQQWTGVNAVLYYAPSIFEQLGMSSNTTSLLATGVVGIAMFIATIPAVIWVDNLGRKPVLVVGAIGMAACHFIIAGIFAQNENQWDSHRAAGWAAVAMVWLFVVHFGYSWGPCAWIIIAEIWPLSVRAKGTALGASANWMNNFIVGQVTPDMLQDIRYGTYIFFGVITFFGALFIAFLVPETKQLSLEEMDVIFGSEGTAVSDFERQAEISREIGLDEALGRLTSSVPAELREVEVKQA bitunicate_ascomycetes Aspergillus_clavatus_NRRL_1 Aspergillus_clavatus_NRRL_1 XM_001269801 NA Nierman,W.C. NA 0:1809 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001517094).COMPLETENESS:_incomplete_on_both_ends. NA 21-FEB-2008 Aspergillus_clavatus_NRRL_1_sugar_transporter_(ACLA_031090),_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_clavatus_A1CRV5_ASPCL.gb Aspergillus 121703074 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001269801 NA NA green_and_blue_molds sac_fungi NA 1809 NA mRNA NA NRRL_1 NA Aspergillus_clavatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 344612 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001269801.1 ATGGGCGGTGCTGTTGATTCCTCAGCGGCGATGGATGCTGCAGCGCAGGCGCGCAGGGCTGCCCTCCGGGGCTCCTCCGGCATGGCAGGGTTGGTTCAGAATCGGAAGGTTTTTGGAATTGCCATGTTTGCGTGCTTGGGAGGTCTTTTGTATGGTTATAACCAGGGAGTGTTTTCAGGCGTTTTGACAATGTATTCTTTCGAGACGCACGTATGGTCTCCTCAACCTTCGCTGTTTCAAGAGGACTTCCTGCTAATATTGTCCCAACAGATGGGTGACGCTGTCACCAATCAAACGAAGAAAGGCTGGTTGACTGCGATTCTCGAACTCGGTGCCTGGTTCGGCGCTTTGTATTCTGGAATTCTCTGCGAGAGAATCTCCCGCAAATATACGATCCTCTTGAACGTATGCATCTTCTGCATCGGCGTTGTAGTTCAGACGACAGCTGGTACCAGTGGTGCTGGCTCATCTCACATCCTGGGTGGTCGTTTCGTGACAGGTATGGGAGTTGGCAGTCTCTCCATGAGTGTTCCCATGTATAACGCGGAGATTGCACCGCCAGAGGTCAGAGGTTCCTTGGTTGCCATGCAACAACTCGCTATCACGTTTGGTATCATGGTAAGAAGGCAGCTATCACCCTCACAAACTATGCGATCATGTCATACTAATCGATGTCACAGGATCAACTACGGAACAAACCATATCGGCGGCACAGGATCGGCCCAGAAGGATACCGCATGGCTTCTACCGCTTGCTCTGCAGCTTGTGCCGGCCGTTGTTCTCGGAATTGGCATGATCTTCATGCCATTCTCTCCTCGTTGGCTCGTCCACCATGACCGAGAGGAGGAAGCCAAGAGGGTTCTCATGAGCCTTCGCGGTCTCTCTGCAGATGATCCGCTTCTTCAACTTGAATTCCTGGAGATCAAAGCCCAGAGTCTCTTTGAGAAACGAACCGAGAAGGAAAAATTCCCTCATCTAGAGAGAACCAATACCTGGAGTTACATCAAGCTGGAGGCGGCGGGATTCGCTAGTCTTTTCACGACCTGGCCGATGTTCAGACGCGTCATGGTTGCTACAGTCACGATGACATTCCAACAATGGACCGGCGTGAACGCCGTGCTCTACTACGCCCCATCTATCTTTGAACAGCTCGGTATGAGCAGCAATACCACCTCGCTTCTCGCCACCGGTGTCGTCGGTATTGCCATGTTCATCGCAACAATCCCAGCCGTCATCTGGGTCGACAACCTCGGCCGCAAACCCGTCCTGGTAGTCGGAGCCATCGGCATGGCGGCCTGCCACTTCATCATCGCGGGTATCTTCGCCCAGAACGAGAACCAGTGGGACTCGCACAGAGCCGCTGGCTGGGCTGCCGTCGCCATGGTCTGGCTCTTCGTCGTCCACTTCGGATACTCATGGGGACCATGCGCCTGGATCATCATCGCGGAGATCTGGCCGCTCAGCGTGCGGGCAAAGGGCACAGCGCTGGGTGCTTCGGCCAACTGGATGAACAACTTCATTGTCGGCCAGGTCACACCCGACATGCTCCAGGACATCCGATACGGAACCTACATCTTCTTCGGCGTCATTACCTTCTTCGGCGCGTTGTTCATTGCGTTCCTGGTTCCCGAGACAAAGCAGCTGTCTCTCGAGGAAATGGACGTCATCTTTGGCTCCGAGGGAACCGCCGTCTCCGACTTCGAGCGCCAGGCTGAGATCTCGCGCGAGATTGGTCTTGATGAAGCCCTGGGGCGGCTTACCAGTTCTGTTCCCGCGGAACTGCGTGAGGTCGAAGTGAAACAGGCTTGA > 66 ACLA_081900 encoded_by_transcript_ACLA_081900A;_predicted_by_EVM2 MFS_phospholipid_transporter_(Git1),_putative XP_001267926.1 NA MEPKSEVQSDQKRIPDKISDSSDPIVLEEAPLEDARKSRWERSWPTIACGAGLFSDGYLNGVIGPVNTLLSKIYPDTYKNSPASRNVSSIVFAGTVLGQLIFGYVSDHWSRKWALMISTVILIIFSALSAGSYGAHGSQSGLFAALTAYRFFLGIGIGGEYPAGSVAAAESTGELKNGHRNRWFIMFTNFQIDSGFVVSSFVAMILMLIFTEDHMRAAWRVALGLGVIPPLSLFYLRLKLNEPEEFNRQRMHKFPVWLIIKYYWKRLFVVSVIWFIYDFSSYSFGIYSSEWLSVILGDTAPLWKTFGWSTVTNLFYIPGSFLGALTSDWIGPRNTLALGVALQGIVGFIMAGCYTYLKDPKNVAAFVVVYGIFSSLGEFGPGDNIGLCAAKTSATSIRGQYYAIAAAFGKIGAFVGTYVFPIIQDNAPNDIRRGQDPYFVSSSLCIFSAFLAYFLLPHIGQDTITDEDAKFRAYLESQGYDTTSLGNKEQR bitunicate_ascomycetes Aspergillus_clavatus_NRRL_1 Aspergillus_clavatus_NRRL_1 XM_001267925 NA Nierman,W.C. NA 0:1476 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001517093).COMPLETENESS:_incomplete_on_both_ends. NA 21-FEB-2008 Aspergillus_clavatus_NRRL_1_MFS_phospholipid_transporter_(Git1),_putative_(ACLA_081900),_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_clavatus_A1CT63_ASPCL.gb Aspergillus 121699148 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001267925 NA NA green_and_blue_molds sac_fungi NA 1476 NA mRNA NA NRRL_1 NA Aspergillus_clavatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 344612 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001267925.1 ATGGAACCCAAATCAGAAGTTCAGAGCGACCAGAAAAGGATTCCTGATAAGATCTCAGACTCCTCTGATCCTATTGTTCTGGAAGAAGCGCCGCTCGAGGACGCCCGAAAGAGTCGATGGGAGCGCAGTTGGCCAACCATTGCTTGCGGTGCTGGTCTCTTTTCTGACGGATATCTCAATGGAGTTATCGGGCCGGTCAACACCCTGCTGAGCAAAATCTACCCCGATACATACAAGAACTCCCCCGCCAGTCGCAATGTCTCTTCCATCGTCTTCGCGGGAACGGTGCTGGGTCAGCTCATCTTTGGATACGTCAGCGATCACTGGTCAAGAAAATGGGCGCTGATGATCTCCACGGTTATCCTGATCATCTTCAGCGCGCTCTCCGCCGGCTCATACGGGGCGCATGGGAGTCAATCAGGCTTGTTCGCTGCTTTGACCGCCTATCGGTTCTTCCTGGGCATTGGCATCGGCGGCGAATATCCTGCAGGGTCCGTCGCCGCGGCGGAGAGTACCGGCGAGCTCAAGAACGGTCATCGCAATCGCTGGTTCATCATGTTCACCAACTTTCAGATCGACTCTGGTTTCGTTGTTTCGTCGTTCGTCGCCATGATCCTGATGTTGATCTTCACCGAAGACCACATGCGTGCCGCATGGCGCGTTGCGCTGGGTTTGGGTGTCATTCCGCCGCTCAGTTTGTTCTACCTGCGGTTGAAGTTGAACGAGCCAGAGGAGTTCAATAGGCAACGGATGCACAAGTTTCCCGTGTGGCTGATCATTAAGTACTACTGGAAGCGTCTGTTCGTGGTCTCCGTGATCTGGTTTATCTATGACTTCTCATCCTATTCATTTGGCATCTACTCGTCGGAGTGGCTGTCCGTCATCCTCGGCGACACCGCTCCCCTCTGGAAGACTTTTGGCTGGAGCACCGTTACCAACCTCTTCTACATTCCAGGTAGTTTCCTGGGTGCACTCACTAGCGATTGGATCGGTCCTCGCAACACATTGGCCCTCGGAGTTGCTTTGCAGGGCATTGTTGGTTTCATCATGGCAGGCTGTTACACCTATCTGAAGGATCCAAAGAACGTCGCGGCCTTTGTCGTTGTCTATGGCATCTTCTCCTCACTCGGAGAATTTGGTCCTGGCGACAATATCGGGTTATGCGCCGCGAAGACTAGTGCCACCTCTATCCGGGGCCAGTACTATGCCATTGCCGCTGCGTTTGGCAAAATCGGTGCTTTCGTCGGCACATATGTGTTTCCGATCATCCAGGACAATGCACCCAACGATATTCGCCGAGGCCAGGATCCGTACTTCGTTTCCAGCTCGTTATGCATCTTTAGCGCCTTCCTAGCGTACTTTCTGCTACCACATATCGGACAGGACACAATCACTGATGAGGACGCCAAGTTCCGCGCTTATCTTGAATCTCAGGGTTATGATACCACATCTCTGGGCAACAAAGAGCAACGGTAA > 67 ACLA_024060 encoded_by_transcript_ACLA_024060A;_predicted_by_EVM2 MFS_quinate_transporter_QutD XP_001269117.1 NA MSILALVEDRPTPKEVYNWRIYLLAAVASFTSCMIGYDSAFIGTTLALGSFREEFEFTTMEPAAVNRVSANIVSCYQAGAFFGAFFAYPIGHFWGRKWGLLSAAAIFTLGAGLMLGANGDRGLGLIYGGRVLAGIGVGAGSNITPIYISELAPPSIRGHLVGVYELGWQIGGLVGFWINYGVSETLAPSHKQWIIPFAVQLIPSGLLLIGAVFLRESPRWLFSSDRREEAIENLCWIRQLPADHIYMIEEIGAIDQALEEQRSTIGLGFWKPFKAAGTNKKVMYRLFLGSMLFFWQNGSGINAINYYSPTVFKSIGLRGTNTGMFSTGIFGVVKTVVTFIWLLYLIDRMGRRLLLLVGAAGASVCLWIVGAYIKIANPAKNGNGEMTGGGIAAMFFFYLYTVFYTPSWNGTPWVMNSEMFEPNMRSLAQACAAASNWLWNFLISRFTPQMFDKMGYGVWFFFASLMLCSIVIVFFLIPETKGIPLESMDALFETKPIWRAHGIVLAKLREDEEQFRQDIEESGYTKSGEQRLESVQPKEA bitunicate_ascomycetes Aspergillus_clavatus_NRRL_1 Aspergillus_clavatus_NRRL_1 XM_001269116 NA Nierman,W.C. NA 0:1623 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001517094).COMPLETENESS:_incomplete_on_both_ends. NA 21-FEB-2008 Aspergillus_clavatus_NRRL_1_MFS_quinate_transporter_QutD_(ACLA_024060),_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_clavatus_QUTD_ASPCL.gb Aspergillus 121701704 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001269116 NA NA green_and_blue_molds sac_fungi NA 1623 NA mRNA NA NRRL_1 NA Aspergillus_clavatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 344612 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001269116.1 ATGTCTATCCTTGCCTTGGTTGAGGATCGACCTACCCCCAAGGAGGTTTACAACTGGAGAATCTACCTTTTGGCTGCGGTAGCCTCCTTCACATCATGCATGATTGGTTATGATAGTGCCTTCATTGGCACCACCCTGGCTCTCGGATCGTTCAGAGAGGAATTCGAATTCACTACTATGGAACCAGCGGCTGTCAACCGGGTGAGTGCCAACATCGTGTCCTGTTACCAAGCAGGTGCCTTCTTTGGCGCCTTTTTCGCATACCCTATCGGTCACTTCTGGGGGAGGAAATGGGGTCTGCTATCTGCCGCCGCCATTTTCACCTTGGGCGCTGGTCTCATGCTCGGGGCCAACGGCGATCGGGGACTGGGACTGATTTACGGAGGGCGAGTCCTGGCCGGCATTGGAGTCGGAGCTGGTTCGAATATCACGCCTATCTATATCTCCGAACTCGCCCCTCCCTCTATCCGAGGACATCTGGTCGGTGTCTACGAGCTGGGTTGGCAGATTGGTGGTCTGGTGGGCTTCTGGATTAACTATGGAGTCAGTGAGACTCTCGCTCCCAGCCACAAACAATGGATCATCCCCTTCGCTGTCCAGCTCATCCCATCTGGCCTCCTCCTCATCGGTGCGGTGTTCCTTCGCGAGTCTCCTCGTTGGCTTTTCTCCAGTGATCGTAGAGAAGAGGCCATTGAGAATCTCTGTTGGATTCGTCAACTGCCCGCGGACCATATCTATATGATTGAGGAGATTGGAGCGATTGACCAAGCCTTGGAGGAGCAGCGCAGCACAATCGGTCTTGGATTCTGGAAACCATTCAAGGCTGCCGGAACTAACAAGAAGGTTATGTATCGGCTGTTCCTTGGAAGCATGCTGTTCTTCTGGCAGAATGGTTCTGGAATCAATGCCATTAACTATTATAGTCCTACCGTGTTCAAGAGCATTGGTCTCCGGGGCACCAACACGGGTATGTTCAGTACCGGCATCTTCGGCGTGGTCAAGACTGTGGTTACCTTCATCTGGCTTCTCTACCTGATTGACCGGATGGGACGACGTCTTCTGCTCCTCGTCGGTGCGGCCGGTGCCTCAGTCTGCTTGTGGATTGTCGGCGCATATATCAAAATTGCGAATCCCGCGAAGAACGGCAATGGAGAGATGACCGGCGGTGGTATCGCCGCCATGTTCTTTTTCTATCTATATACCGTCTTTTACACACCGTCGTGGAACGGCACACCTTGGGTGATGAACTCGGAAATGTTCGAGCCCAACATGCGGTCTCTGGCGCAGGCCTGCGCTGCCGCTTCCAACTGGCTCTGGAATTTCCTCATCTCCCGGTTTACTCCCCAGATGTTCGACAAGATGGGCTATGGGGTGTGGTTTTTCTTCGCATCGCTGATGCTCTGCTCCATTGTCATCGTGTTCTTTTTGATTCCTGAAACCAAGGGCATTCCTCTGGAGAGCATGGATGCTCTCTTTGAGACGAAGCCGATCTGGCGTGCTCACGGAATTGTCCTGGCCAAGCTTCGCGAGGACGAGGAACAATTCCGTCAGGACATCGAGGAGTCTGGCTACACCAAGTCAGGCGAGCAGCGGTTGGAGAGCGTCCAGCCCAAAGAGGCTTGA > 68 AFLA_030520 encoded_by_transcript_AFLA_030520A high-affinity_hexose_transporter,_putative XP_002374562.1 NA MAYYLVTLCCVFTTLGSFLFGYDSGVISSTLDQEDFQNRFNHPSDAATGGIVASYNGGAILGSALVSYISDPYGRRPVIFIGGLLGSLGAALQAGAVTVAMLIAGRLIAGLAVGLMSSAIPVYCSEVSPPRIRGFLGSMQQWMIGLGFVVAVCYITIIRLYSFRQWTGYGCSLHTGAITWRLPLAIQAVPAVILCFGVWLLPESPRWLIEKGRAEAGREILARLHSNRDRSNIHMVEAEIAQINDSIAEERRSAVHSWRELLSKARWRHRLLLACGIQAFTQCSGTNIISNYNPGLYRTLGLKGTTPLMLQGIWGALAQFWNTVFMLFIDRVGRRKLLIPSLLGMGATMCIEAALAQANGGFRDPSANPDAVRAAIAMFFVFSIFFTSLGLISWIYPSEIFPTAIRARGSSLATATNWSLNLVFAQCTPIARSTMGFNYFYCFFAFNWVAAAITWAFYPETAGKSLEDVEHIFSSSSRDDFPHPVPDLKNDVVAVANPADSDWSRENLELSCHAKMS bitunicate_ascomycetes Aspergillus_flavus_NRRL3357 Aspergillus_flavus_NRRL3357 XM_002374521 NA Nierman,W.C. NA 0:1554 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002477238).COMPLETENESS:_incomplete_on_both_ends. NA 19-JAN-2010 Aspergillus_flavus_NRRL3357_high-affinity_hexose_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_flavus_B8N1I7_ASPFN.gb Aspergillus 238486647 Submitted_(16-AUG-2007)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002374521 NA NA green_and_blue_molds sac_fungi NA 1554 NA mRNA NA NRRL3357 NA Petromyces_flavus_B.W._Horn,_I._Carbone_&_G.G._Moore_2009 NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 332952 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_002374521.1 ATGGCTTACTATCTTGTCACCCTTTGCTGCGTCTTCACAACTCTGGGCTCCTTTCTCTTCGGTTATGATTCCGGCGTGATTTCGTCAACCCTTGATCAAGAAGATTTCCAGAATCGCTTTAATCACCCCTCTGATGCCGCAACGGGTGGTATAGTCGCTTCCTACAATGGGGGTGCAATTCTAGGTTCCGCTCTGGTCTCATACATCTCCGATCCTTATGGACGGCGTCCTGTCATCTTCATTGGAGGCCTTCTCGGAAGCTTGGGTGCAGCGTTGCAAGCCGGTGCCGTAACTGTCGCCATGCTCATTGCAGGTCGATTGATTGCAGGTTTGGCTGTAGGCTTGATGTCGTCTGCAATTCCAGTTTACTGTAGTGAGGTATCGCCTCCCCGGATACGCGGCTTTCTGGGCTCCATGCAACAATGGATGATCGGGTTGGGGTTTGTTGTCGCTGTATGTTACATCACTATCATTCGTCTGTATAGCTTTCGACAATGGACTGGATATGGTTGTTCCCTTCACACCGGCGCCATAACCTGGCGGCTCCCCTTGGCCATCCAGGCCGTTCCCGCCGTGATCCTCTGTTTTGGTGTTTGGCTCCTTCCCGAGTCTCCACGCTGGCTGATTGAGAAAGGCCGCGCTGAAGCGGGCCGAGAAATCCTGGCTCGTTTACATTCAAACCGGGACAGGTCTAATATCCACATGGTTGAAGCCGAGATCGCCCAGATCAACGACAGCATCGCCGAGGAACGACGTTCCGCCGTACACTCCTGGCGCGAACTACTAAGCAAGGCTCGCTGGCGCCATCGCCTGTTACTTGCGTGCGGCATTCAAGCGTTTACCCAATGCTCAGGTACCAACATCATCTCGAACTACAATCCAGGCCTATACAGGACGCTAGGCCTGAAGGGCACAACACCTCTCATGCTACAGGGAATATGGGGTGCACTGGCCCAGTTCTGGAATACGGTGTTCATGCTTTTCATTGACCGTGTGGGTCGTCGTAAGCTTCTCATCCCTTCCCTGCTCGGCATGGGTGCCACCATGTGCATAGAAGCGGCCTTAGCCCAGGCCAACGGCGGCTTTCGCGACCCTTCTGCCAACCCGGATGCTGTCCGTGCTGCGATCGCCATGTTCTTTGTCTTCTCAATCTTCTTTACCAGCCTTGGGCTCATCTCCTGGATCTATCCATCTGAGATCTTCCCGACAGCGATCCGCGCCCGCGGCTCATCGCTGGCAACAGCTACCAATTGGAGTTTGAACCTTGTCTTTGCGCAATGCACGCCAATTGCGAGGTCAACCATGGGCTTCAATTACTTTTATTGCTTCTTCGCTTTTAATTGGGTGGCCGCTGCCATTACTTGGGCCTTTTACCCCGAAACTGCTGGCAAGTCGCTTGAGGACGTCGAACATATCTTCTCATCCAGCTCCCGTGATGATTTTCCGCATCCTGTGCCGGACCTTAAGAACGATGTTGTTGCTGTCGCGAACCCTGCAGACAGCGACTGGTCGAGGGAGAATCTGGAGCTTAGCTGCCATGCAAAAATGTCATAG > 69 AFLA_105090 encoded_by_transcript_AFLA_105090A;_similar_to_GenBank:AAT91307.1:_hexose_transporter_(Paxillus_involutus);_%_similarity:_63.1;_coverage:_91.6% MFS_sugar_transporter,_putative XP_002376381.1 NA MGSVKNLDQEADVSIEHAEIASSHAPPAYEIPRVTWWKLHGLRKLYAMMPLLFLGSTINGYDGSLLNGLQTMSPWQTYFDNPTGSTLGLFTAIQNIGGVCALFFASYVADLLGRRIGVAVGLVVIFIGTIIQVVPPVNSGMFIAGRFLVGLGSNISQGSAPLLITELAHPQHRGTLTTMYNTLWYIGSIVAAWTVFGTIKYNSEASWRIPVGMQAAMPAIQFVGIWFLPESPRWLCAKNRPDEAFNILVKYHGNGDQTDQLCAFEFYEIQGTLRLEEENSRNGWQTLIKTPGNRKRLLLIVLVSFFSQCSGNGLVSYYLHSILNSVGIESSHDQAVINGGLQLWSFLVAIGFSSFLVDVLGRRMLFMIAAVGMLVSFSIWTGCSAVYANTGDTGAGSAVIAMIFLFYGVAGFAWPGLTVAYCAEILPFQIRAKGMAVAFACTSAASVFNQYVNPIGLERLQWKFYFVYIAILVVECLCIWFLFVETKGPTLEEITALFDGDDANVGRSVEGVTHQRAANTEKISA bitunicate_ascomycetes Aspergillus_flavus_NRRL3357 Aspergillus_flavus_NRRL3357 XM_002376340 NA Nierman,W.C. NA 0:1578 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002477240).COMPLETENESS:_incomplete_on_both_ends. NA 19-JAN-2010 Aspergillus_flavus_NRRL3357_MFS_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_flavus_B8N7R6_ASPFN.gb Aspergillus 238490287 Submitted_(16-AUG-2007)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002376340 NA NA green_and_blue_molds sac_fungi NA 1578 NA mRNA NA NRRL3357 NA Petromyces_flavus_B.W._Horn,_I._Carbone_&_G.G._Moore_2009 NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 332952 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_002376340.1 ATGGGTTCTGTCAAAAACCTTGACCAGGAGGCCGATGTCTCGATTGAACATGCGGAGATAGCATCTTCACATGCCCCCCCTGCCTATGAAATACCAAGGGTCACCTGGTGGAAACTCCATGGTCTGAGAAAGCTCTATGCAATGATGCCTCTTTTGTTTCTTGGCTCGACTATCAATGGATATGATGGCTCGCTTTTAAACGGTTTGCAAACAATGTCTCCGTGGCAAACCTATTTTGATAATCCCACAGGGTCAACGCTTGGGTTATTCACAGCGATCCAGAATATTGGTGGGGTCTGCGCTCTTTTCTTCGCCTCTTATGTGGCCGACCTGTTGGGACGCAGGATCGGTGTAGCAGTGGGCCTTGTCGTGATCTTCATTGGCACAATAATACAGGTTGTCCCACCTGTGAACAGTGGAATGTTCATCGCTGGAAGATTCCTGGTCGGTCTTGGTTCCAACATCAGTCAGGGGTCGGCCCCGTTGCTCATCACAGAGCTGGCACATCCTCAGCACCGCGGAACATTGACAACTATGTACAACACTCTGTGGTATATTGGATCAATTGTCGCGGCTTGGACTGTTTTTGGGACCATTAAATATAATTCGGAAGCATCTTGGAGGATACCGGTTGGGATGCAAGCAGCTATGCCTGCTATTCAATTTGTAGGAATCTGGTTCCTCCCGGAAAGTCCTCGCTGGCTATGCGCCAAAAACAGGCCAGATGAAGCCTTCAACATCTTGGTAAAGTATCATGGCAATGGGGACCAAACGGATCAACTCTGTGCATTTGAGTTCTATGAGATTCAGGGAACCTTGCGACTGGAAGAGGAAAACTCCCGGAACGGCTGGCAGACCCTTATAAAAACTCCGGGAAATCGTAAACGTCTCCTCCTGATTGTGTTGGTTTCCTTCTTTTCTCAATGTTCGGGAAATGGCCTGGTATCATATTACCTGCACTCGATCCTGAACTCAGTGGGTATCGAGTCGTCGCATGATCAGGCGGTGATTAACGGAGGCTTGCAACTTTGGTCCTTCCTTGTGGCTATCGGATTCTCCTCCTTCCTCGTCGACGTTCTGGGCCGGCGGATGCTCTTTATGATCGCAGCCGTAGGAATGCTGGTAAGCTTCAGTATTTGGACAGGATGTTCCGCTGTTTATGCGAATACAGGAGACACCGGAGCAGGAAGCGCGGTGATTGCAATGATATTTCTCTTTTACGGTGTGGCAGGCTTCGCGTGGCCCGGACTCACCGTGGCTTACTGCGCGGAGATCCTTCCATTTCAAATCCGAGCGAAGGGAATGGCTGTTGCGTTCGCTTGCACATCAGCGGCATCGGTCTTCAATCAATACGTGAACCCGATTGGTTTGGAAAGATTGCAATGGAAATTTTATTTTGTTTATATCGCCATTCTTGTCGTTGAGTGTCTTTGTATTTGGTTCCTTTTTGTCGAGACAAAAGGTCCGACCTTGGAGGAAATTACAGCATTATTTGATGGTGACGATGCGAACGTTGGGAGGTCAGTGGAGGGGGTGACACATCAAAGAGCCGCGAATACCGAGAAAATTAGCGCGTAA > 70 AFLA_056070 encoded_by_transcript_AFLA_056070A MFS_sugar_transporter,_putative XP_002378351.1 NA MGSLKDVEASHDDHKDATAVEMDDILQDSKGTAAFDEAAMDMELQQLENQLGELKKSRFELALPNPAYFTYILVAFASLGGLLSGLDQSLISGANLYMPDDLHLSDSRASLVNAGMPLGAVGGALILSPANEYLGRRMAIIVSCILYTIGAALEAGAVNFGMMFAGRFILGMGVGLEGGTVPVYVAECVWFHPLTVTVPSRIRGNLVSLYQLNIALGEVLGYAVAAIFLDVKGNWRYILGSSLVFSTILLVGMLFLPESPRFLMHKNKPVEAYGVWKKIRGFEDIDAKSEFLGMRQSVESENEEQQHTKKYAWMDFFTNPRARRAMVYANIMIVLGQLTGVNAVMYYMGTLMENIGFDKRNSVFMSLVGGGSLLIGTIPAVMYMEKFGRRYWANTMLPCFFIGLVLVGVGYQINPERNPVAAQGVYLTGIILYMGFFGSYACLTWVIPSEVFPTYLRSYGMTTADANLFLCSFIVTYNFTAMMKSMTRIGLTLGFYGGIAAIGWVYQVIFMPETKNKSLEEIDELFSKPTSYIVKENMKSTAQIIRDLSHFRFKKVFSP bitunicate_ascomycetes Aspergillus_flavus_NRRL3357 Aspergillus_flavus_NRRL3357 XM_002378310 NA Nierman,W.C. NA 0:1680 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002477242).COMPLETENESS:_incomplete_on_both_ends. NA 19-JAN-2010 Aspergillus_flavus_NRRL3357_MFS_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_flavus_B8NDW6_ASPFN.gb Aspergillus 238494229 Submitted_(16-AUG-2007)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002378310 NA NA green_and_blue_molds sac_fungi NA 1680 NA mRNA NA NRRL3357 NA Petromyces_flavus_B.W._Horn,_I._Carbone_&_G.G._Moore_2009 NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 332952 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_002378310.1 ATGGGGTCGTTAAAGGATGTTGAGGCCTCCCATGATGACCACAAGGATGCTACCGCCGTGGAGATGGATGATATCCTCCAAGACTCCAAGGGCACCGCCGCCTTTGACGAGGCTGCCATGGATATGGAACTCCAACAGCTAGAGAATCAACTGGGTGAATTGAAGAAGTCGCGCTTCGAGCTCGCGCTGCCCAACCCGGCCTACTTTACTTATATCCTAGTCGCATTTGCCTCCCTGGGAGGTTTGCTCTCCGGCCTGGACCAGTCCTTGATCAGTGGTGCCAACCTCTACATGCCCGATGACCTGCACTTGTCTGACTCGCGCGCCAGCTTGGTTAATGCCGGTATGCCGCTGGGTGCCGTGGGTGGTGCGCTAATTCTTTCTCCGGCCAACGAGTACTTGGGCCGTCGTATGGCTATTATCGTATCGTGCATCCTCTACACCATTGGTGCTGCTTTGGAGGCCGGCGCGGTCAACTTTGGCATGATGTTTGCGGGCCGTTTCATTCTAGGTATGGGTGTTGGTTTGGAGGGTGGTACCGTTCCGGTTTATGTTGCTGAATGTGTCTGGTTCCATCCGCTTACAGTTACAGTCCCATCACGGATTCGTGGTAACCTGGTCTCGCTGTATCAGCTAAACATTGCTCTGGGCGAGGTCCTTGGCTATGCGGTTGCGGCCATCTTCCTGGATGTCAAGGGCAACTGGCGCTATATTCTTGGCTCATCCCTGGTCTTCTCAACCATCCTTCTTGTCGGAATGCTTTTCCTGCCTGAAAGTCCTCGTTTCTTGATGCACAAGAACAAGCCGGTGGAAGCATATGGTGTTTGGAAAAAGATCCGTGGCTTCGAGGATATCGATGCCAAGAGTGAGTTCTTAGGTATGCGCCAGTCGGTGGAGTCGGAAAACGAGGAGCAGCAGCACACCAAGAAGTACGCCTGGATGGACTTCTTTACCAATCCACGTGCTCGCCGCGCCATGGTCTACGCCAACATCATGATTGTCCTCGGCCAGCTAACGGGTGTCAACGCCGTAATGTACTACATGGGTACTCTTATGGAAAATATCGGGTTCGACAAGCGCAACAGTGTCTTCATGTCGCTTGTGGGTGGTGGTTCTTTGCTGATCGGCACAATCCCGGCGGTCATGTACATGGAGAAATTCGGTCGGCGTTACTGGGCCAATACCATGCTGCCGTGTTTCTTTATTGGTCTTGTTTTGGTTGGCGTGGGTTATCAAATCAATCCCGAACGAAACCCAGTGGCCGCCCAGGGCGTCTACCTCACCGGCATCATTCTCTACATGGGTTTCTTTGGCTCATACGCTTGTCTGACCTGGGTTATCCCATCCGAGGTGTTCCCCACCTACCTTCGTAGTTATGGTATGACTACTGCCGACGCCAACCTTTTCCTATGCTCGTTCATCGTCACATACAACTTCACCGCTATGATGAAATCTATGACCCGTATCGGTCTCACATTGGGCTTCTACGGTGGCATCGCCGCAATCGGCTGGGTCTACCAGGTCATCTTCATGCCAGAAACGAAGAACAAGTCTCTGGAAGAGATCGACGAGCTGTTCTCCAAGCCCACGTCATATATCGTCAAGGAGAACATGAAGAGCACTGCGCAGATCATCCGGGATCTCTCCCATTTCCGGTTCAAGAAAGTGTTCAGCCCCTAG > 71 AFLA_070030 encoded_by_transcript_AFLA_070030A sugar_transporter,_putative XP_002380562.1 NA MFNEGIASIVADQLHSFWWAFSPRWDRSFMDFAANDTQTGLVVSMFTAGAFFGSAFAGPSGDILGRRKTISLGCVIFCLGGGLQTGAQTVAYLYSGRFLAGLG bitunicate_ascomycetes Aspergillus_flavus_NRRL3357 Aspergillus_flavus_NRRL3357 XM_002380521 NA Nierman,W.C. NA 0:312 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002477244).COMPLETENESS:_incomplete_on_both_ends. NA 27-MAY-2009 Aspergillus_flavus_NRRL3357_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_flavus_B8NIX5_ASPFN.gb Aspergillus 238498653 Submitted_(16-AUG-2007)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002380521 NA NA green_and_blue_molds sac_fungi NA 312 NA mRNA NA NRRL3357 NA Petromyces_flavus_B.W._Horn,_I._Carbone_&_G.G._Moore_2009 NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 332952 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_002380521.1 ATGTTTAACGAAGGGATAGCTTCTATAGTTGCTGATCAATTACACAGTTTCTGGTGGGCGTTTTCGCCTCGCTGGGATCGTTCCTTTATGGATTTCGCAGCAAATGACACCCAGACCGGATTGGTTGTGTCTATGTTCACAGCAGGTGCCTTCTTCGGCTCAGCATTTGCAGGTCCCAGTGGTGATATTCTCGGCAGAAGAAAGACCATCTCCCTCGGTTGTGTAATCTTTTGTCTTGGTGGAGGGCTCCAGACTGGAGCACAGACAGTCGCATACTTATACAGTGGGAGGTTCCTGGCCGGACTTGGGTAA > 72 AFLA_095190 encoded_by_transcript_AFLA_095190A sugar_transporter,_putative XP_002381339.1 NA MMDGMKNKNTKTGNQAWRRKPRKWAPKSRLGCKTCKIRRVKCDLSQPSCLKCLSTGRTCDGYGEMPLAVKPEKTEMDSTHYQNSCKSDHPSTTISAYESKQWHSKYHGIMLQNLGSFLVLPVTGPTQAEAMCFFNDISIKHLNGYRPCEPWRNTLMFFSQTVPSARHAAIALALIHRNYLECHSNGRMYQPPALKDRLPDKAPLLHYNRAIQLLLNPESDDSAEITAVTLLVCYLFTCFDHLAGDDVQAMKHLRGGVALSRNTTLNCCTYGDAQSSGVHTTICQVTQQIRRLDMQAAMFLVDWTPANIQETSLSDSTFWSLDQAADHLQVLVAQVMRLRNTEQQISPTGTMSPLPSSPKDIVLAQLGTWSSLFENLLQQGSPSESDVAIHLLVSLLRLQHTIAWTLLRGYGPGREMDYDNFLPQFQQCVALAGEVAAAHQRYSGSSRPTFTPEIGFIPVLYIIGVKCRHPKVRREVLTILRRQPIREASWDSISTARVVERVIEIEEGAAGEQQMVPRPRIHNNSLGHALSASEKAITSLCSAGPFLGAIIADLTADKYGRKGPMYVGFALFTVEAILQAPGYSVPQMAVGRLTVGLGVGSAAMIVPAYIAEIAPMKYRGHMVGLNNVSITGGQVISYAIGAAFASVPHGWRYMVGLGGVPSIFLAILPPLCPESPCQLISYGKVEEAVNVRHWIFSNASEEQISAKIQLISETVQELSYQPRGAAGGI bitunicate_ascomycetes Aspergillus_flavus_NRRL3357 Aspergillus_flavus_NRRL3357 XM_002381298 NA Nierman,W.C. NA 0:2190 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002477245).COMPLETENESS:_incomplete_on_both_ends. NA 19-JAN-2010 Aspergillus_flavus_NRRL3357_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_flavus_B8NM87_ASPFN.gb Aspergillus 238500208 Submitted_(16-AUG-2007)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002381298 NA NA green_and_blue_molds sac_fungi NA 2190 NA mRNA NA NRRL3357 NA Petromyces_flavus_B.W._Horn,_I._Carbone_&_G.G._Moore_2009 NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 332952 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_002381298.1 ATGATGGACGGGATGAAGAACAAGAATACCAAGACGGGCAATCAAGCCTGGAGAAGAAAGCCTCGCAAGTGGGCTCCAAAGTCAAGATTAGGCTGTAAGACTTGCAAGATAAGACGAGTTAAATGCGATCTATCTCAACCTTCATGCTTGAAGTGCCTCTCTACCGGTCGCACCTGCGATGGCTATGGTGAAATGCCCCTCGCTGTCAAGCCGGAGAAGACCGAGATGGATTCAACTCATTATCAGAATAGCTGCAAGAGTGACCACCCCTCTACCACGATCAGTGCGTACGAGTCGAAGCAATGGCACTCGAAATACCATGGCATAATGTTGCAGAATCTCGGATCCTTTTTGGTCTTACCCGTGACTGGGCCAACCCAGGCGGAGGCAATGTGCTTTTTCAACGATATTTCGATCAAGCATCTGAATGGATACCGCCCTTGCGAACCATGGCGGAACACTCTCATGTTCTTCTCTCAAACAGTGCCATCAGCGCGGCATGCTGCCATAGCTCTAGCCCTGATTCACCGAAACTACCTGGAGTGTCATTCTAATGGTCGGATGTATCAACCGCCCGCCTTAAAGGACCGGCTACCGGATAAGGCTCCTTTGCTGCACTATAACCGCGCCATTCAACTTCTGCTCAACCCGGAAAGTGATGACAGCGCCGAAATAACAGCTGTCACGCTTTTGGTTTGTTATCTCTTTACCTGCTTTGATCATCTGGCGGGCGACGACGTACAAGCAATGAAACACCTGCGCGGAGGTGTGGCGCTCTCACGCAACACAACATTGAACTGCTGTACCTACGGCGACGCCCAATCCTCGGGCGTTCACACGACTATCTGCCAGGTGACACAGCAGATTCGCCGTCTTGACATGCAGGCCGCCATGTTTCTGGTCGACTGGACTCCAGCCAACATTCAAGAGACATCACTCTCCGACAGTACATTTTGGTCACTCGACCAAGCTGCCGACCACCTCCAGGTGCTCGTCGCTCAGGTAATGAGGCTGCGCAACACAGAGCAACAAATATCCCCGACGGGTACGATGTCACCGTTACCGTCTTCACCCAAAGACATTGTTCTTGCGCAGTTGGGAACGTGGTCGAGTCTCTTCGAAAACCTCCTGCAACAAGGCAGCCCCAGTGAGTCAGATGTTGCAATTCACCTTCTCGTATCACTCCTGCGCTTACAACATACTATCGCGTGGACTCTCCTCCGTGGTTATGGACCTGGCAGAGAAATGGACTATGACAATTTCCTGCCCCAGTTCCAGCAATGCGTCGCATTGGCGGGCGAAGTAGCGGCGGCGCATCAGCGGTATTCGGGGTCGTCAAGGCCGACTTTTACGCCCGAGATCGGATTTATCCCCGTTCTTTACATAATTGGAGTGAAGTGCCGACATCCTAAGGTCCGTCGTGAGGTCTTGACTATTTTGCGACGGCAGCCAATACGGGAGGCGAGTTGGGATAGCATCTCTACTGCCCGGGTGGTTGAGCGGGTTATCGAAATTGAAGAGGGTGCGGCTGGGGAACAGCAAATGGTACCCCGTCCTCGTATACATAACAACAGTCTGGGTCATGCACTCTCCGCCAGTGAAAAGGCGATTACATCTCTCTGTTCAGCAGGGCCCTTCCTGGGCGCTATTATTGCCGACCTAACTGCTGACAAATATGGTCGCAAAGGGCCTATGTATGTGGGATTCGCTCTCTTTACCGTCGAGGCCATTCTTCAGGCCCCAGGATATTCTGTACCGCAAATGGCAGTTGGCAGGTTGACTGTTGGCCTTGGGGTCGGGTCAGCAGCAATGATCGTGCCTGCATACATTGCCGAAATCGCTCCGATGAAATATCGCGGCCATATGGTAGGACTGAACAATGTCAGTATTACCGGAGGCCAAGTGATCAGCTATGCCATAGGTGCTGCTTTCGCTTCTGTCCCTCACGGCTGGCGTTATATGGTCGGCCTGGGTGGTGTACCCTCGATTTTTTTAGCTATCCTCCCTCCTCTATGCCCAGAATCACCTTGTCAACTTATCTCCTATGGCAAAGTCGAGGAAGCCGTAAATGTCCGCCACTGGATCTTCAGCAATGCATCTGAAGAGCAGATATCGGCCAAGATCCAACTGATTAGTGAAACCGTCCAAGAGCTCAGCTATCAACCCAGGGGCGCAGCCGGTGGGATATAG > 73 AFLA_000820 encoded_by_transcript_AFLA_000820A MFS_sugar_transporter,_putative XP_002382283.1 NA MPEYEVEPNLKGFLGAAYSLGAILSLPFVPWVNQRFGRRWTVMFGSCISLVGALLQGFSNGVGMYIVARMLLGFGIPYCIVAGSCLIGELGYPKERPILTSLFNSSYFIGQIVAAAVGLGTVTIASNWAWRIPSLLQLAPAMVQVVFVFFLPESPRYLISKDRHEEAFGILAKYHAEGDRNSVIVRAEIAQIERTIKLELEEAKQSWWDMFRTAGMRRRLLISAFLGLFTQWSGNTLISYYLSDLLDMVGITDSVTKSKINIGIACWGLVSGTALALTAPLFKRRTMYLTCATSLLCVYIGWTISMERFMTTEVRAAAILTIFFIFAYSPAYNLGYNALTYTYLIEIFPYFGRSRGLSWFQFYGRGSAFFATYVNPVGWYLSTSFSRKRLEGHWRSCRLCSRAKKKPMKWLLQCTSRSKWMGRREARLRCFSILIPYEIVFTVQCYLM bitunicate_ascomycetes Aspergillus_flavus_NRRL3357 Aspergillus_flavus_NRRL3357 XM_002382242 1..1347 Nierman,W.C. NA 0:1347 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002477247).COMPLETENESS:_incomplete_on_the_5_end. NA 19-JAN-2010 Aspergillus_flavus_NRRL3357_MFS_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_flavus_B8NPL8_ASPFN.gb Aspergillus 238502098 Submitted_(16-AUG-2007)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002382242 NA NA green_and_blue_molds sac_fungi NA 1347 NA mRNA NA NRRL3357 NA Petromyces_flavus_B.W._Horn,_I._Carbone_&_G.G._Moore_2009 NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 332952 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_002382242.1 ATGCCCGAGTACGAGGTCGAACCGAATCTCAAAGGCTTTCTAGGAGCGGCATATTCCCTTGGAGCTATCCTTTCTCTGCCATTTGTCCCCTGGGTTAATCAACGTTTTGGAAGGAGATGGACGGTTATGTTCGGGTCTTGCATCAGCTTGGTGGGTGCGCTACTACAAGGGTTCTCAAACGGAGTCGGAATGTATATAGTAGCTCGCATGTTACTTGGATTTGGGATTCCATATTGCATCGTGGCTGGTTCTTGCCTCATCGGTGAGCTCGGTTATCCCAAGGAACGACCAATCCTCACGTCCTTGTTTAACTCGTCCTATTTCATTGGTCAAATCGTGGCTGCTGCCGTCGGCCTGGGCACGGTGACTATCGCAAGCAACTGGGCGTGGAGAATCCCTTCACTGTTGCAGCTGGCTCCTGCTATGGTCCAGGTGGTCTTTGTTTTCTTTCTGCCAGAGAGCCCTCGATATTTGATCAGCAAAGACCGACACGAAGAAGCCTTCGGCATTCTGGCCAAATACCATGCCGAGGGAGACCGTAACTCCGTTATCGTGCGCGCGGAGATTGCCCAGATTGAACGGACCATCAAGCTCGAGCTCGAAGAGGCGAAACAAAGCTGGTGGGACATGTTCCGCACCGCGGGGATGCGGCGTCGGCTGCTCATCTCCGCGTTTTTGGGATTGTTTACCCAATGGTCCGGAAATACCTTGATTTCGTACTATCTCAGCGACTTGCTGGATATGGTCGGCATCACCGACAGTGTGACCAAGTCCAAGATCAACATCGGTATTGCTTGCTGGGGGTTGGTCTCTGGAACCGCCTTAGCTCTTACGGCGCCTCTGTTCAAGCGGCGAACGATGTATTTAACCTGTGCGACATCGTTGCTTTGCGTGTACATTGGCTGGACTATTTCCATGGAGCGGTTCATGACAACAGAGGTCAGGGCGGCCGCAATCCTGACTATCTTCTTCATCTTTGCCTATTCCCCGGCATACAACCTAGGCTACAATGCTTTGACTTACACTTACCTGATTGAAATCTTCCCTTACTTCGGTCGCTCTCGTGGCCTCTCCTGGTTCCAGTTTTATGGCCGCGGGTCGGCATTCTTCGCTACATATGTCAATCCCGTCGGTTGGTATTTATCTACTTCCTTTTCCCGGAAACGTCTGGAAGGACATTGGAGGAGCTGTCGTTTATGTTCGAGGGCAAAGAAAAAGCCAATGAAGTGGCTGCTGCAGTGCACAAGCAGATCGAAGTGGATGGGAAGACGGGAGGCCAGGCTTAGGTGCTTTTCTATATTGATACCTTATGAAATTGTCTTTACAGTCCAGTGCTATCTGATGTGA > 74 AFLA_001250 encoded_by_transcript_AFLA_001250A hexose_carrier_protein,_putative XP_002382326.1 NA MAPRTDTTMSSATSNLTWTIFMVMIFGSLSSAGFGFDQAWWSAIMSLDQFLRRFGSYDPAQEKWILSSRNQSIGTGMGYVGVILGVICGTPLNERFGRKMTLYIQSFAVAVGVIIESTCTTSYAQFVVGKAIVYFGGGIATNAIPTYQGECAPPSLRGLMAGTYNAFLMIGGFAAALIVYLCRHITTDWAWRVVVVAQIGIPFMGWISLPFLPESPHWLIRRGRLDEATKALRRLRGSGFPAEEEVVILQQILEEERALREATSWKDCFSNAVNLRRTIICVGAQVFQQAQGISFVANYQAVFLSQIGFREVLLMSVVVYVIGVVANLLSMFTADRSGRRSVMLGGAALLCACMMVIGGLTTRGTSHMSYSMQVATVVMLMLWFFCFQTTWGPLAWVITSEVPPTSVREKMVTLSGFSAYGVGLIIVFVNPYTQDAIGGSVAFIYGSLSVVAFLFTFFFVPELRQRSLEQIDEMFNEQLPTRSFASYVCNIPDEGRVEKQTETIEYVENLP bitunicate_ascomycetes Aspergillus_flavus_NRRL3357 Aspergillus_flavus_NRRL3357 XM_002382285 NA Nierman,W.C. NA 0:1536 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002477247).COMPLETENESS:_incomplete_on_both_ends. NA 19-JAN-2010 Aspergillus_flavus_NRRL3357_hexose_carrier_protein,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_flavus_B8NPR1_ASPFN.gb Aspergillus 238502184 Submitted_(16-AUG-2007)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002382285 NA NA green_and_blue_molds sac_fungi NA 1536 NA mRNA NA NRRL3357 NA Petromyces_flavus_B.W._Horn,_I._Carbone_&_G.G._Moore_2009 NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 332952 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_002382285.1 ATGGCACCTCGCACAGACACCACGATGTCTTCAGCCACGTCCAACCTCACCTGGACCATATTCATGGTCATGATATTTGGCTCTTTATCATCTGCTGGATTTGGATTCGACCAGGCCTGGTGGTCAGCTATCATGAGCTTGGACCAGTTCTTGCGTAGGTTTGGTTCATATGATCCGGCCCAGGAGAAATGGATTCTCTCCTCTAGAAATCAGTCTATTGGAACTGGTATGGGTTACGTTGGTGTTATTCTGGGCGTCATATGTGGCACACCGTTGAATGAACGGTTCGGACGCAAGATGACTCTTTACATCCAGTCCTTTGCGGTAGCAGTGGGTGTCATCATCGAGTCGACTTGCACCACAAGCTACGCTCAATTCGTTGTCGGCAAAGCAATTGTGTATTTTGGCGGCGGCATTGCCACCAACGCCATCCCCACATATCAAGGCGAGTGTGCCCCGCCATCGTTGCGAGGACTGATGGCCGGCACATACAACGCATTCCTTATGATTGGCGGCTTCGCAGCTGCACTCATCGTCTACTTGTGTCGTCATATCACCACCGACTGGGCCTGGCGAGTCGTTGTCGTGGCACAAATTGGTATTCCTTTCATGGGCTGGATCAGCCTACCCTTCCTGCCAGAGTCACCACACTGGCTGATCAGACGAGGCCGGTTGGATGAGGCAACTAAGGCCCTTCGCCGTCTCCGTGGCTCCGGGTTCCCCGCCGAAGAAGAGGTCGTAATACTCCAACAAATATTGGAAGAAGAGCGGGCATTGCGAGAGGCCACCAGCTGGAAGGATTGCTTCTCTAATGCGGTTAACCTTCGCAGGACAATCATATGTGTCGGTGCTCAGGTCTTCCAACAGGCTCAAGGGATTTCCTTCGTCGCGAACTACCAAGCTGTTTTCCTCTCCCAGATTGGGTTTCGCGAAGTGCTACTTATGTCTGTCGTTGTATATGTTATTGGCGTGGTAGCGAATCTGTTAAGCATGTTCACGGCCGATCGATCGGGGCGGCGCAGTGTCATGCTTGGTGGTGCAGCCCTTCTCTGTGCATGTATGATGGTCATCGGCGGGTTGACAACACGCGGCACGTCGCATATGTCATACTCTATGCAGGTAGCAACGGTTGTCATGTTGATGCTCTGGTTCTTCTGCTTCCAGACTACCTGGGGCCCTCTCGCCTGGGTCATTACTTCTGAGGTTCCGCCAACATCCGTGCGAGAGAAAATGGTTACGCTATCCGGCTTTTCCGCCTACGGTGTCGGCTTGATTATTGTATTTGTGAACCCGTACACACAAGACGCTATTGGTGGTAGCGTTGCCTTCATCTACGGGTCACTGTCGGTTGTCGCATTTCTATTCACGTTTTTCTTCGTACCTGAGCTGCGGCAACGAAGCTTGGAGCAGATTGACGAGATGTTCAATGAGCAATTGCCAACTCGCAGCTTTGCATCGTACGTCTGCAATATCCCTGACGAAGGGCGGGTTGAAAAGCAAACCGAAACGATTGAATATGTTGAGAACCTCCCTTGA > 75 AFUB_015730 encoded_by_transcript_AFUB_015730A MFS_hexose_transporter,_putative EDP56852.1 NA MAPAAAHATDGILSTIDLKSIPSFWRRKNGILLYFLLTSSLLASAALGIDGSMTNGMQVLQSWQDRFGHPTGSKLGFFGAANAIGGVIPFIFLGWIGDKFGRRLPTALGSVIIIVGVLVEFFATSLDMYIGGKIVLGVGSSLIQMGAPVLVTELSHPKERVQITTFYNTSIVLGYVIGAWATFGCYRISSQWSWRLPTLIQIIPSAYQFCLIWFCPESPRWLIAKGRLQEARAILVKYHGECDPNSELVDFECAEIQQAIAKEAENNMTWKDFFSSVPNLKRIFLCFATAVFSQSSGNLLVSNYLTQILKDTSLKTEFEITLVNGMVTLWQYIVAITVTLIIDRFKRRFFFLTGSGGVLVTFIVWTIAAQRYLETGSLAAGRLVLACIFVFQAFYTLAWTNLIVTYPLEIVTYQMRAKTWAFVLLTIQVSSIFGGYVNPIGLKNIGWKFYIYYCVWVAIVFAVVYFFFVETAGPTLEELTYLFEGQEEKKQLARKIEELKQDVHVSEHVEKLRGL bitunicate_ascomycetes Aspergillus_fumigatus_A1163 Aspergillus_fumigatus_A1163 DS499594 4458414..4459808 Fedorova,N.D.,_Khaldi,N.,_Joardar,V.S.,_Maiti,R.,_Amedeo,P.,_Anderson,M.J.,_Crabtree,J.,_Silva,J.C.,_Badger,J.H.,_Albarraq,A.,_Angiuoli,S.,_Bussey,H.,_Bowyer,P.,_Cotty,P.J.,_Dyer,P.S.,_Egan,A.,_Galens,K.,_Fraser-Liggett,C.M.,_Haas,B.J.,_Inman,J.M.,_Kent,R.,_Lemieux,S.,_Malavazi,I.,_Orvis,J.,_Roemer,T.,_Ronning,C.M.,_Sundaram,J.P.,_Sutton,G.,_Turner,G.,_Venter,J.C.,_White,O.R.,_Whitty,B.R.,_Youngman,P.,_Wolfe,K.H.,_Goldman,G.H.,_Wortman,J.R.,_Jiang,B.,_Denning,D.W._and_Nierman,W.C. NA 0:>1395 NA NA 18-APR-2008 Aspergillus_fumigatus_A1163_scf_000001_genomic_scaffold,_whole_genome_shotgun_sequence. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_fumigatus_B0XNU8_ASPFC.gb Aspergillus 159130197 PLoS_Genet._4_(4),_E1000046_(2008) fungi DS499594 MFS_hexose_transporter,_putative NA green_and_blue_molds sac_fungi 18404212 1395 NA genomic_DNA NA A1163 NA Sartorya_fumigata NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 451804 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_islands_in_the_pathogenic_filamentous_fungus_Aspergillus_fumigatus NA DS499594.1 CTACAGGCCCCTAAGCTTTTCGACATGCTCTGATACATGAACATCCTGCTTAAGCTCCTCAATCTTCCGCGCCAACTGCTTCTTCTCCTCTTGGCCCTCGAAAAGGTACGTCAACTCCTCCAGCGTCGGCCCAGCAGTCTCCACAAAGAAGAAATACACGACGGCGAATACGATGGCGACCCATACACAGTAATAGATGTAAAATTTCCAGCCGATATTTTTCAGCCCGATGGGATTGACATAGCCGCCAAAAATGGATGACACCTGGATGGTCAGCAAGACAAAGGCCCACGTCTTCGCGCGCATCTGATACGTCACGATCTCCAAGGGATAGGTGACGATCAAATTGGTCCAGGCAAGGGTGTAAAAGGCCTGGAAAACAAAGATACAGGCGAGCACGAGTCGTCCCGCCGCCAACGAGCCGGTTTCCAGGTAGCGCTGCGCCGCAATGGTCCACACGATGAATGTGACCAGCACGCCTCCGGAGCCTGTGAGGAAGAAGAAGCGTCGCTTGAATCGGTCAATGATCAAGGTCACGGTGATGGCGACAATATACTGCCACAAGGTGACCATGCCGTTCACCAGGGTTATCTCAAACTCGGTCTTCAAGCTGGTGTCCTTCAGGATCTGCGTCAGATAGTTTGACACGAGAAGGTTGCCCGAACTCTGACTGAAGACTGCGGTAGCAAAACAGAGGAAGATCCGCTTGAGATTGGGCACGGAGGAGAAGAAGTCCTTCCACGTCATGTTGTTCTCCGCTTCCTTTGCGATCGCTTGCTGGATCTCTGCGCACTCGAAGTCAACTAGCTCGGAGTTGGGATCACATTCTCCGTGGTATTTGACCAAGATCGCGCGTGCTTCCTGCAGCCGACCCTTGGCAATCAGCCATCGAGGGGATTCCGGGCAAAACCAGATGAGGCAGAATTGATAGGCCGATGGGATGATCTGGATGAGGGTGGGCAGCCTCCAGGACCATTGGCTGCTGATGCGGTAGCACCCGAAAGTCGCCCAGGCACCAATCACATACCCTAGTACGATGGAGGTGTTGTAGAAAGTGGTGATTTGCACTCGTTCTTTGGGATGCGACAACTCGGTCACCAGCACGGGGGCGCCCATCTGGATGAGCGAGGAGCCCACGCCCAGCACGATCTTCCCACCAATGTACATGTCCAACGAGGTGGCAAAGAACTCAACGAGGACCCCGACGATGATGATCACCGATCCCAAGGCTGTAGGAAGACGTCGCCCGAACTTGTCTCCAATCCAGCCGAGAAAGATAAAAGGAATGACACCTCCAATTGCGTTGGCCGCACCGAAGAATCCCAATTTGGAACCGGTCGGGTGGCCGAACCTATCTTGCCAGGATTGCAAGACCTGCATGCCGTTCGTCATCGA > 76 AFUB_009350 encoded_by_transcript_AFUB_009350A MFS_sugar_transporter,_putative EDP56227.1 NA MRLSPSLYQVCPPMPEVPSNHTDPSTSSWWASSPLWVRFFLAVCILSTGLEVFTVLICGVKMIWVLLQKSLRASLSMQSLPQTIRKRECICLCCGLVVSLFTAGAFFGAGFAGPAGDYLGRRWTIAIGCLVFCLGGGLQTGAQNISYLYSGRFFAGLGVGFLTMIVPLYQAEICHPKIRGRVTALQQFMLGVGALCAAWISYGTYVGFDPTNNAQWQVPLGLQIAPAVILGLLIMFFPESPRWLIDHGYNEKGLATLAKLHAHGNEDDAWVRAEYNQIQESIVYEHEHEAKSYSELFTNRSSFRRLFLCCALQASVQMTGVSAIQYYSVTIYNQIGIAGDETLKYQAINSIIALVAECLCMAFIDRFGRRWTLIGGNLGNMVTFIIACILLARFPPEANNTGAHWGFIIMTWLYNFSFSCTCGPLSWIIPAEVFDTRTRSKGVSIATMTSFAFNTMIGQVTPIAMTNVRYRYYYLFIICNFTNALFFWLLLPETKKLPLEEMNYLFSNAPWIVPGTRKEDYTPHDLERKVEEQQEKQAVFATHHE bitunicate_ascomycetes Aspergillus_fumigatus_A1163 Aspergillus_fumigatus_A1163 DS499594 2639614..2639894 Fedorova,N.D.,_Khaldi,N.,_Joardar,V.S.,_Maiti,R.,_Amedeo,P.,_Anderson,M.J.,_Crabtree,J.,_Silva,J.C.,_Badger,J.H.,_Albarraq,A.,_Angiuoli,S.,_Bussey,H.,_Bowyer,P.,_Cotty,P.J.,_Dyer,P.S.,_Egan,A.,_Galens,K.,_Fraser-Liggett,C.M.,_Haas,B.J.,_Inman,J.M.,_Kent,R.,_Lemieux,S.,_Malavazi,I.,_Orvis,J.,_Roemer,T.,_Ronning,C.M.,_Sundaram,J.P.,_Sutton,G.,_Turner,G.,_Venter,J.C.,_White,O.R.,_Whitty,B.R.,_Youngman,P.,_Wolfe,K.H.,_Goldman,G.H.,_Wortman,J.R.,_Jiang,B.,_Denning,D.W._and_Nierman,W.C. NA 0:281 NA NA 18-APR-2008 Aspergillus_fumigatus_A1163_scf_000001_genomic_scaffold,_whole_genome_shotgun_sequence. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_fumigatus_B0XQB3_ASPFC.gb Aspergillus 159130197 PLoS_Genet._4_(4),_E1000046_(2008) fungi DS499594 MFS_sugar_transporter,_putative NA green_and_blue_molds sac_fungi 18404212 281 NA genomic_DNA NA A1163 NA Sartorya_fumigata NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 451804 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_islands_in_the_pathogenic_filamentous_fungus_Aspergillus_fumigatus NA DS499594.1 ATGCGCTTGAGTCCGTCGTTGTACCAGGTATGTCCTCCAATGCCTGAGGTACCTAGCAACCATACTGATCCGTCGACTAGTTCCTGGTGGGCGTCTTCGCCTCTCTGGGTTCGTTTCTTTTTGGCTGTATGTATCCTATCTACTGGACTTGAAGTGTTTACGGTGCTGATCTGCGGTGTCAAGATGATTTGGGTGTTATTGCAGAAGTCATTGCGTGCCAGTCTTTCGATGCAAAGTTTGCCGCAGACGATACGCAAACGTGAGTGTATCTGCCTTTGCTG > 77 AFUB_020570 encoded_by_transcript_AFUB_020570A sugar_transporter,_putative EDP54011.1 NA MPFFNPFRKHDQTTFHGVVIPLSSAPSHARPESPALEKKGSPKEKPDDSSLDKAPSQENGSAASIPERSHLTIESLRAEIESDVAASGHDTAYDRKSKVINRAIQDIGMGRYQWELFCLCGFGWLADNVCALFACLGLGVGGNLPVDGALFLEFLPFASGNLLTMLSVWWPVGQLIASLIAWGLIPSYSCADDLPSCKAVGDGVACCGKDNNMGWRYFVLTMGSLTIVMFICRFFLFHLYESPKFLLARGRQDEAVAAVHGIAYKNKTKTWLTVDILNEIGGYPEENAPQTLSTKEIVQRNLSKFSLQRVRPLFATKKLGFTTVILWFCWTTIGMGYPLFNAFLPQYIKNAGGSTEASTYVTYRNYAITSIVGVPGSILACYTVDIKYIGRKGTMVISTLITGVLLFCFTASTNSNVQLVCSCLEAFFQNIMYGVLYAYTPEVFPAPSRGTGTGISSCLNRIAGLCAPLVAIYGGSSNPNSPIYASGGLILASFVAMCCLPIETMGKQSL bitunicate_ascomycetes Aspergillus_fumigatus_A1163 Aspergillus_fumigatus_A1163 DS499595 917133..917698 Fedorova,N.D.,_Khaldi,N.,_Joardar,V.S.,_Maiti,R.,_Amedeo,P.,_Anderson,M.J.,_Crabtree,J.,_Silva,J.C.,_Badger,J.H.,_Albarraq,A.,_Angiuoli,S.,_Bussey,H.,_Bowyer,P.,_Cotty,P.J.,_Dyer,P.S.,_Egan,A.,_Galens,K.,_Fraser-Liggett,C.M.,_Haas,B.J.,_Inman,J.M.,_Kent,R.,_Lemieux,S.,_Malavazi,I.,_Orvis,J.,_Roemer,T.,_Ronning,C.M.,_Sundaram,J.P.,_Sutton,G.,_Turner,G.,_Venter,J.C.,_White,O.R.,_Whitty,B.R.,_Youngman,P.,_Wolfe,K.H.,_Goldman,G.H.,_Wortman,J.R.,_Jiang,B.,_Denning,D.W._and_Nierman,W.C. NA 0:>566 NA NA 18-APR-2008 Aspergillus_fumigatus_A1163_scf_000002_genomic_scaffold,_whole_genome_shotgun_sequence. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_fumigatus_B0XUM6_ASPFC.gb Aspergillus 159128562 PLoS_Genet._4_(4),_E1000046_(2008) fungi DS499595 sugar_transporter,_putative NA green_and_blue_molds sac_fungi 18404212 566 NA genomic_DNA NA A1163 NA Sartorya_fumigata NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 451804 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_islands_in_the_pathogenic_filamentous_fungus_Aspergillus_fumigatus NA DS499595.1 TCACAGCGATTGCTTCCCCATCGTCTCGATAGGAAGACAGCACATTGCGACAAAGGACGCAAGGATGAGTCCACCAGAGGCGTAGATGGGGGAGTTGGGGTTTGAGCTCCCGCCGTAGATGGCGACGAGGGGCGCACACAGCCCAGCAATGCGGTTCAGACAGCTTGAGATACCCGTTCCGGTGCCGCGGCTGGGGGCGGGGAAGACCTCGGGGGTGTAGGCGTAGAGGACGCCGTACATGATGTTCTGGAAGAAGGCCTCGAGGCAGCTGCAGACGAGCTGGACGTTGGAGTTAGTAGAGGCGGTGAAGCAGAAGAGGAGGACGCCGGTGATGAGGGTCGAGATGACCATTGTGCCTTTGCGGCCGATGTACTTGATGTCGACGGTGTAGCACGCCAGGATGGAGCCTGGCACGCCGACAATGGAAGTGATGGCGTAGTTGCGGTAGGTGACGTAGGTGGAGGCCTCGGTGGAGCCGCCGGCGTTTTTGATGTACTGGGGCAGGAACGCGTTGAAGAGGGGGTAGCCCATTCCGATTGTGGTCCAGCAGAACCAGAGGATAACCG > 78 AFUB_048240 encoded_by_transcript_AFUB_048240A hexose_transporter_protein EDP53638.1 NA MSPNVKWTDVPNNTHPIWYKDVGLRRNVALGLGLCLVTATNVNQASLLTGFQAMPSWQKYFKSPTGALLGIYAASYFLPSIFTAFIGDVISTKMGRRWCIIVANIIITIGCLVNTFASSVGMWCGGRAIIGAGVGIVKVAAPVLIQEISHPRLRPILGSCYQTFAYIGIFFAAIMTFAGLYVPGDWGWRFPSLLQVIGPVAVIIVTMLCPESPRWLIKNGREEEAVGVLARLHANGDKEDALVQLEIKEIRTAIEREVAQRKASFVDFLRTRGNRRRLAVVVALACSLNWMGNGIITYFLSPILKSVGITSAVQITLINSGLALWNLILAASAAVYCDKAGRRPLFLTSVAGMLCSYVVVMGLSAGFANTKQSSLGIAVIPLLFIYFAFYDMAFTPLPIAYTVEILPFTIRSKGMALFTSTATMGNAFNQFVNPIALKAISWRYYAVYIAILLFYFCFIFFMFPETKRLSAEDAARVFDYNRKGAVLDKAGDDVEQGPVSPDNEKQESRSVVEVKDRV bitunicate_ascomycetes Aspergillus_fumigatus_A1163 Aspergillus_fumigatus_A1163 DS499596 4087163..4087388 Fedorova,N.D.,_Khaldi,N.,_Joardar,V.S.,_Maiti,R.,_Amedeo,P.,_Anderson,M.J.,_Crabtree,J.,_Silva,J.C.,_Badger,J.H.,_Albarraq,A.,_Angiuoli,S.,_Bussey,H.,_Bowyer,P.,_Cotty,P.J.,_Dyer,P.S.,_Egan,A.,_Galens,K.,_Fraser-Liggett,C.M.,_Haas,B.J.,_Inman,J.M.,_Kent,R.,_Lemieux,S.,_Malavazi,I.,_Orvis,J.,_Roemer,T.,_Ronning,C.M.,_Sundaram,J.P.,_Sutton,G.,_Turner,G.,_Venter,J.C.,_White,O.R.,_Whitty,B.R.,_Youngman,P.,_Wolfe,K.H.,_Goldman,G.H.,_Wortman,J.R.,_Jiang,B.,_Denning,D.W._and_Nierman,W.C. NA 0:>226 NA NA 18-APR-2008 Aspergillus_fumigatus_A1163_scf_000003_genomic_scaffold,_whole_genome_shotgun_sequence. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_fumigatus_B0XXG4_ASPFC.gb Aspergillus 159127106 PLoS_Genet._4_(4),_E1000046_(2008) fungi DS499596 hexose_transporter_protein NA green_and_blue_molds sac_fungi 18404212 226 NA genomic_DNA NA A1163 NA Sartorya_fumigata NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 451804 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_islands_in_the_pathogenic_filamentous_fungus_Aspergillus_fumigatus NA DS499596.1 TCAAACCCTGTCCTTGACTTCAACAACGGACCTGGATTCTTGTTTCTCGTTGTCAGGGCTGACAGGGCCCTGTTCAACATCATCACCGGCCTTATCCAAGACAGCGCCCTTCCTGTTGTAGTCGAAAACCCTTGCTGCATCTTCAGCCGACAGACGTTTAGTCTCGGGGAACATGAAGAAGATGAAACAAAAGTAGAACAGCAAAATGGCAATATACACCGCGTAA > 79 AFUB_080510 encoded_by_transcript_AFUB_080510A MFS_maltose_permease,_putative EDP48615.1 NA MANNPDTMDGEKPRPLAKGKKAARKEQSMTLWQAVRLYPKAVGWSVLLSSTLIMEGYDLALLGSMYASPAFNQKYGVQSASGKWTVPASWQSALSNGARVGEVIGLLINGLISERLGYRWTMVSALAAMNAVIFLFFFAVDIKMLLAAEILAGIPWGIFQTLPAAYASEVCPVVLRPYLTTFINMCWVIGQFVAVGVNRGSIQRPDQWAYRIPFAVQWAWPLPILIGILFAPESPWWHVRRGNLQGAKRALQRLTSSKDPNFDPDETIAMIQHTNELEKALASGTKYRDCFKGTNLRRTEVVCVVWLVQTLCGQNLMGYFAYFCVQAGLPTVHSFDLSLAQYALGFIGTAGSWFLMTYTGRRTLHVCGLACLFTLLVITGSLSFAPGDNSAAKWAIGAMLIIFTFCYDFTIGPVTYSLVSELSSTRLKAKTIVLARVGYNVSNIVVNVLTNYQLNSTAWNWGARSAYFWAGSCLVCLVWSYFRLPEPKGRTYEELDLLFEQGVSARKFRETVVDPYAGEEEHVEVREEHHKD bitunicate_ascomycetes Aspergillus_fumigatus_A1163 Aspergillus_fumigatus_A1163 DS499600 240980..242578 Fedorova,N.D.,_Khaldi,N.,_Joardar,V.S.,_Maiti,R.,_Amedeo,P.,_Anderson,M.J.,_Crabtree,J.,_Silva,J.C.,_Badger,J.H.,_Albarraq,A.,_Angiuoli,S.,_Bussey,H.,_Bowyer,P.,_Cotty,P.J.,_Dyer,P.S.,_Egan,A.,_Galens,K.,_Fraser-Liggett,C.M.,_Haas,B.J.,_Inman,J.M.,_Kent,R.,_Lemieux,S.,_Malavazi,I.,_Orvis,J.,_Roemer,T.,_Ronning,C.M.,_Sundaram,J.P.,_Sutton,G.,_Turner,G.,_Venter,J.C.,_White,O.R.,_Whitty,B.R.,_Youngman,P.,_Wolfe,K.H.,_Goldman,G.H.,_Wortman,J.R.,_Jiang,B.,_Denning,D.W._and_Nierman,W.C. NA 0:1599 NA NA 18-APR-2008 Aspergillus_fumigatus_A1163_scf_000007_genomic_scaffold,_whole_genome_shotgun_sequence. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_fumigatus_B0Y9C2_ASPFC.gb Aspergillus 159123446 PLoS_Genet._4_(4),_E1000046_(2008) fungi DS499600 MFS_maltose_permease,_putative NA green_and_blue_molds sac_fungi 18404212 1599 NA genomic_DNA NA A1163 NA Sartorya_fumigata NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 451804 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_islands_in_the_pathogenic_filamentous_fungus_Aspergillus_fumigatus NA DS499600.1 ATGGCCAACAATCCAGACACTATGGATGGAGAAAAGCCCCGGCCGCTCGCGAAGGGCAAGAAGGCCGCCCGCAAAGAGCAGTCCATGACTCTCTGGCAAGCGGTTCGCTTGTATCCCAAGGCCGTGGGCTGGTCTGTCCTCCTCTCGTCGACACTGATCATGGAAGGATACGATTTGGCCCTGCTCGGCTCCATGTACGCGTCTCCGGCGTTCAATCAGAAGTACGGGGTGCAGTCTGCGTCCGGCAAATGGACGGTCCCGGCGTCGTGGCAATCGGCACTCTCCAACGGGGCCCGAGTGGGCGAAGTCATCGGCTTGCTCATCAATGGTCTTATTTCGGAACGGCTGGGTTACCGCTGGACCATGGTCTCCGCGCTGGCGGCAATGAACGCCGTGATCTTTCTCTTCTTCTTCGCGGTTGACATCAAAATGCTGCTCGCGGCGGAGATCCTGGCCGGGATTCCCTGGGGCATCTTCCAGACTCTGCCCGCCGCATATGCCTCGGAAGTGTGCCCCGTCGTTCTTCGCCCGTACTTGACGACGTTTATCAACATGTGTTGGGTCATCGGGCAATTCGTCGCGGTGGGTGTGAATCGCGGATCCATCCAACGCCCCGACCAGTGGGCGTACCGGATCCCCTTCGCAGTCCAGTGGGCATGGCCACTCCCGATCCTCATTGGCATCCTCTTCGCGCCCGAATCCCCCTGGTGGCATGTCCGACGCGGTAATCTCCAGGGCGCCAAACGGGCCCTGCAGCGGCTGACTTCGTCCAAGGATCCGAACTTCGACCCGGATGAGACCATCGCCATGATCCAGCATACGAACGAGCTGGAAAAGGCGCTTGCGAGCGGCACCAAATACCGCGATTGTTTCAAGGGGACGAACCTGCGCCGAACCGAGGTGGTCTGTGTAGTTTGGCTGGTCCAGACCTTGTGCGGGCAGAACCTCATGGGCTACTTTGCGTACTTTTGCGTCCAGGCGGGTCTGCCGACGGTGCATTCCTTCGATCTCTCGCTGGCGCAGTATGCCCTCGGCTTCATTGGGACGGCGGGATCGTGGTTCCTGATGACTTACACCGGTCGCCGCACACTGCACGTCTGCGGTCTGGCATGCCTCTTCACCCTGCTCGTCATCACAGGCAGTCTCTCCTTCGCGCCGGGGGACAATAGCGCAGCCAAGTGGGCGATCGGTGCGATGTTGATCATCTTCACCTTCTGCTACGACTTTACGATCGGCCCCGTGACGTACTCGCTGGTGTCGGAACTGTCGTCCACGCGACTCAAGGCCAAGACGATCGTGCTGGCGCGAGTAGGATACAACGTCAGTAACATTGTGGTCAATGTGCTCACCAACTATCAGCTCAACTCGACGGCTTGGAACTGGGGCGCCCGCAGCGCATATTTCTGGGCGGGATCATGCCTTGTCTGCTTGGTCTGGTCATACTTCCGCCTGCCGGAGCCCAAGGGAAGGACGTATGAGGAACTTGACCTGCTGTTCGAGCAAGGAGTGTCGGCGCGCAAGTTCAGAGAGACGGTGGTTGATCCATACGCGGGCGAGGAGGAACACGTGGAGGTGCGAGAGGAGCATCACAAGGACTAA > 80 AFUB_085270 encoded_by_transcript_AFUB_085270A MFS_sugar_transporter,_putative EDP49077.1 NA MDSNTDPYSEPPCPLQQLRTPAPISPSTLDPTEPGSCHREPISSTHKTTHSPYEVWGCDSNSTNGLVSPTTRPSEPDLFNGLSTLIPGLRRLDYGARAATNAERKITFLDGCRLYPKAMAWSAVVSSTLIMEGFDTLLLFTFFSLPAFKRYYGVPSKNGDYEIPARWQFGLSTAIEVGEIAGLLLNGLLADRVGYRITISAAIVLLFFCILLPFFAVNLQMLLAGQILCGIPWGVFQTMTINYAAEVMPVALRAYLLSSINMCWVVGQLLATGVTRSLANNESTLSFRLPFGLQWAIGLPVLIGVILAPESPWWLIRHDRPEEAKRSLKRLTRSGVSVDQTAAMLTHTNEVEKHLMAGGAISYLDCFKRVDLRRTEITCCVWISQQLCGTSLMGWAAYYYKQAGFDTSHAFDLTVGTFGLAIAGGVISWFLMPRVGRRRLYLSGLLVLFLTLLTAGCISVASSTQWRLWALGSFLIFMTFVYNITVGPICYVLVAEIPSTRLRVKTVVLARVAYNFSGVLINWITPNMLSPDEWDWKGKSCFFFAGTTLLCLLWCYWRLPETYGLSYLEIDILFEKKAKKSKFRELQANLQDRGYFGLREDECPFRGY bitunicate_ascomycetes Aspergillus_fumigatus_A1163 Aspergillus_fumigatus_A1163 DS499600 1622635..1624461 Fedorova,N.D.,_Khaldi,N.,_Joardar,V.S.,_Maiti,R.,_Amedeo,P.,_Anderson,M.J.,_Crabtree,J.,_Silva,J.C.,_Badger,J.H.,_Albarraq,A.,_Angiuoli,S.,_Bussey,H.,_Bowyer,P.,_Cotty,P.J.,_Dyer,P.S.,_Egan,A.,_Galens,K.,_Fraser-Liggett,C.M.,_Haas,B.J.,_Inman,J.M.,_Kent,R.,_Lemieux,S.,_Malavazi,I.,_Orvis,J.,_Roemer,T.,_Ronning,C.M.,_Sundaram,J.P.,_Sutton,G.,_Turner,G.,_Venter,J.C.,_White,O.R.,_Whitty,B.R.,_Youngman,P.,_Wolfe,K.H.,_Goldman,G.H.,_Wortman,J.R.,_Jiang,B.,_Denning,D.W._and_Nierman,W.C. NA 0:1827 NA NA 18-APR-2008 Aspergillus_fumigatus_A1163_scf_000007_genomic_scaffold,_whole_genome_shotgun_sequence. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_fumigatus_B0YAN4_ASPFC.gb Aspergillus 159123446 PLoS_Genet._4_(4),_E1000046_(2008) fungi DS499600 MFS_sugar_transporter,_putative NA green_and_blue_molds sac_fungi 18404212 1827 NA genomic_DNA NA A1163 NA Sartorya_fumigata NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 451804 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_islands_in_the_pathogenic_filamentous_fungus_Aspergillus_fumigatus NA DS499600.1 TCAGTACCCCCGAAAAGGACACTCGTCTTCCCTGAGACCGAAATAGCCCCGGTCTTGGAGATTAGCCTGAAGCTCGCGGAATTTGCTCTTTTTCGCTTTTTTCTCGAACAGAATGTCGATCTCGAGGTAGCTCAAGCCGTAGGTTTCCGGTAGCCTCCAGTAGCACCAGAGTAGGCACAAAAGGGTCGTCCCGGCGAAAAAGAAACAGGACTTGCCCTTCCAGTCCCACTCGTCGGGACTCAGCATATTTGGCGTTATCCAGTTGATTAGCACGCCGGAAAAGTTGTAGGCCACGCGGGCCAGAACGACGGTCTTTACACGGAGCCGGGTGGAAGGAATCTCGGCGACCAGCACGTAGCAAATTGGCCCGACGGTGATGTTGTATACGAAGGTCATGAAAATAAGAAAAGAGCCAAGAGCCCACAAGCGCCATTGTGTGCTTGAAGCTACGCTGATACACCCGGCAGTAAGTAGAGTGAGGAATAGGACAAGAAGGCCAGAAAGATAGAGTCGGCGCCGACCCACACGGGGCATCAGGAACCAGGAGATTACCCCCCCGGCAATTGCCAGGCCAAAGGTCCCGACTGTGAGATCGAAAGCGTGGCTGGTGTCGAATCCAGCCTGCTTGTAATAGTATGCCGCCCAGCCCATGAGGCTGGTTCCACACAATTGCTGAGAGATCCAGACGCAGCACGTAATCTCTGTCCGGCGAAGGTCGACCCGTTTGAAGCAGTCCAGGTACGAGATGGCGCCGCCGGCCATCAGATGCTTTTCGACTTCGTTGGTATGTGTCAACATGGCGGCCGTCTGATCCACGCTGACGCCGCTCCGCGTCAGCCGTTTCAGAGACCGTTTGGCCTCTTCCGGTCGGTCGTGCCGGATCAACCACCAGGGTGATTCGGGGGCCAGGATCACGCCGATCAGAACGGGCAAGCCGATGGCCCACTGGAGGCCAAACGGAAGGCGAAAGGACAGTGTGGATTCGTTGTTGGCCAATGAACGAGTCACACCCGTTGCGAGGAGCTGACCCACTACCCAGCACATATTGATGCTGCTGAGAAGGTATGCGCGGAGCGCGACTGGCATGACTTCGGCGGCGTAGTTGATAGTCATGGTCTGAAAGACGCCCCAGGGGATTCCACACAAGATCTGTCCTGCAAGCAACATCTGCAAATTGACCGCGAAAAAGGGCAATAAGATACAGAAAAAGAGAAGAACGATAGCGGCAGATATAGTGATGCGATAACCGACGCGATCAGCCAACAGACCATTGAGAAGCAGTCCAGCAATCTCCCCTACCTCTATCGCAGTCGACAAACCAAACTGCCAACGAGCAGGAATTTCATAGTCGCCGTTCTTGCTTGGCACGCCATAGTATCGTTTGAAGGCCGGAAGTGAGAAGAAAGTGAATAGGAGTAGAGTGTCGAACCCTTCCATGATGAGAGTGGAAGACACAACCGCCGACCACGCCATCGCCTTTGGGTATAGCCGGCAACCATCCAAGAATGTGATTTTGCGTTCTGCGTTTGTCGCTGCCCTAGCTCCATAATCCAGCCGGCGCAATCCAGGAATTAGAGTCGAGAGACCATTGAAAAGATCAGGCTCGGATGGCCGAGTGGTAGGGGAAACCAGGCCATTGGTACTATTGCTGTCGCACCCCCAAACCTCATATGGACTATGCGTTGTCTTGTGGGTGCTCGATATCGGCTCGCGATGACATGAACCTGGTTCGGTTGGGTCAAGAGTGGAGGGGGAGATCGGGGCTGGCGTCCGCAATTGTTGAAGCGGGCATGGAGGCTCGGAATAGGGATCAGTATTGGAGTCCAT > 81 AFUB_085430 encoded_by_transcript_AFUB_085430A MFS_sugar_transporter,_putative EDP49093.1 NA MASQSPSFLGLSGRALHWAQVALVGAPAFIVFGYNQAGVGPLATLQSWVKTFPQIDTINTTGSLEAHNSTSKGAVIASFQIGALIGALSCTLISDRLGRRKTIFLGSILTIIGEVLQVASYGLVQFVIGRIILGMGVGQYSVAVPVWQSECSSAKNRGQHVIIDGQRAEEATHSLASLKGLPANDEAIRAEISGIESSLELTAQSKGSLMEMFDPNDQERLFYRFCLCIILQFFQQMCGGNLISVYASTIFEQNLGLSASLSKNLAACALTWKFICCFIAFFTIDRLGRRVVFMISGTGMAICMIALAITNSRGTDNKGASIASVVFIFLFNLFYPIGFLGGNFLYCTEVAPVRLRVAMSSISTANHWLWNFVVVMVTPIALDTIGYQYYVMYAVLSACIPLLVYFFYPETMNRNLELLNHVFRDASSPWKIVSMANHLPQGEVTEADLMEMNKKGDGCSVEMAEKV bitunicate_ascomycetes Aspergillus_fumigatus_A1163 Aspergillus_fumigatus_A1163 DS499600 1674631..1675541 Fedorova,N.D.,_Khaldi,N.,_Joardar,V.S.,_Maiti,R.,_Amedeo,P.,_Anderson,M.J.,_Crabtree,J.,_Silva,J.C.,_Badger,J.H.,_Albarraq,A.,_Angiuoli,S.,_Bussey,H.,_Bowyer,P.,_Cotty,P.J.,_Dyer,P.S.,_Egan,A.,_Galens,K.,_Fraser-Liggett,C.M.,_Haas,B.J.,_Inman,J.M.,_Kent,R.,_Lemieux,S.,_Malavazi,I.,_Orvis,J.,_Roemer,T.,_Ronning,C.M.,_Sundaram,J.P.,_Sutton,G.,_Turner,G.,_Venter,J.C.,_White,O.R.,_Whitty,B.R.,_Youngman,P.,_Wolfe,K.H.,_Goldman,G.H.,_Wortman,J.R.,_Jiang,B.,_Denning,D.W._and_Nierman,W.C. NA 0:>911 NA NA 18-APR-2008 Aspergillus_fumigatus_A1163_scf_000007_genomic_scaffold,_whole_genome_shotgun_sequence. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_fumigatus_B0YAQ0_ASPFC.gb Aspergillus 159123446 PLoS_Genet._4_(4),_E1000046_(2008) fungi DS499600 MFS_sugar_transporter,_putative NA green_and_blue_molds sac_fungi 18404212 911 NA genomic_DNA NA A1163 NA Sartorya_fumigata NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 451804 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_islands_in_the_pathogenic_filamentous_fungus_Aspergillus_fumigatus NA DS499600.1 CTAGACCTTCTCCGCCATCTCGACAGAGCACCCATCGCCCTTCTTGTTCATCTCCATCAGGTCTGCCTCGGTGACCTCACCCTGAGGCAGATGATTCGCCATAGAAACAATTTTCCAGGGGGACGACGCGTCCCTGAAAACATGGTTCAGCAACTCCAGGTTGCGGTTCATAGTCTCGGGGTAGAAGAAGTACACCAGCAATGGGATGCACGCCGAGAGCACGGCATACATGACGTAGTACTGGTACCCGATCGTGTCCAGTGCGATGGGCGTGACCATCACGACGACAAAGTTCCACAGCCAGTGGTTCGCCGTCGAGATGGACGACATTGCCACACGCAGTCGAACGGGAGCCACTTCCGTACAGTAGAGGAAATTACCGCCGAGGAAGCCGATCGGGTAGAAGAGATTGAAGAGGAAGATGAAGACGACGGAGGCGATGGACGCGCCCTTGTTATCTGTGCCGCGGCTGTTGGTGATGGCCAGCGCAATCATGCAAATCGCCATGCCAGTGCCGCTGATCATGAAGACGACTCGACGGCCGAGCCGGTCGATGGTGAAGAAGGCGATGAAGCAGCAGATGAATTTCCATGTTAAGGCGCAGGCGGCCAGGTTCTTGGACAGGCTGGCGCTGAGGCCGAGGTTCTGCTCAAATATCGTTGAGGCGTACACAGAGATCAGATTACCACCGCACATCTGCTGGAAGAATTGCAGGATGATACAGAGACAGAAGCGGTAGAATAGTCGCTCCTGGTCGTTGGGGTCGAACATCTCCATCAAAGAGCCTTTGGATTGCGCGGTCAACTCAAGCGATGATTCAATGCCCGAAATTTCGGCCCGGATTGCCTCGTCGTTGGCAGGCAGGCCCTTTAGCGATGCGAGCGAGTGGGTTGCCTCCTCGGCGCGTTGAC > 82 AFUB_100670 encoded_by_transcript_AFUB_100670A MFS_maltose_transporter,_putative EDP47073.1 NA MDNVTEKQTSALELEEQPVSKGGPVYDVNEKVGLDRAGAINAEDVEHKMTVVEAVKAYPAASWWAFVMSCTIIMESYCVFLMGQFIATKRFARDYGVWSDVKQDFIIEASWQSAFQCSGPVGAFIGVFIAGPITSWIGYRWATIGGLMFLNAFIFIFYFGNSQGMFLASQILEGIPWGIFVANAPAYCSEIVPMRLRAPATQMLQMFWAIGSIIVGGITYHYQSRDDPTAYRIPIALQWMFPTPLAILLYLAPESPWWLVRKGRLADAEKAVRRLGRASANDDPADAVAMMRRTIELEKTEKKPSLVELWKGTDLYRTLIVCGVYASQNLTGNLIANQAVYFFKQAGMADNTAFALGLITSALQWIMVMLSWILTTYLGRRTIYVYGQLINCVFLVALGIAASVGASKAASNAQASLGLIVSVLFCLGPAPASWVIIGETSSVRLRPLTTGIGRGAYYVVNIPCIFLASYMLNADKWNLGGKSGYVWAGTAFICTFMSWLWIPEMKDRSFREIDILFKRRVPARKWKQTVVDINDDE bitunicate_ascomycetes Aspergillus_fumigatus_A1163 Aspergillus_fumigatus_A1163 DS499604 41193..41773 Fedorova,N.D.,_Khaldi,N.,_Joardar,V.S.,_Maiti,R.,_Amedeo,P.,_Anderson,M.J.,_Crabtree,J.,_Silva,J.C.,_Badger,J.H.,_Albarraq,A.,_Angiuoli,S.,_Bussey,H.,_Bowyer,P.,_Cotty,P.J.,_Dyer,P.S.,_Egan,A.,_Galens,K.,_Fraser-Liggett,C.M.,_Haas,B.J.,_Inman,J.M.,_Kent,R.,_Lemieux,S.,_Malavazi,I.,_Orvis,J.,_Roemer,T.,_Ronning,C.M.,_Sundaram,J.P.,_Sutton,G.,_Turner,G.,_Venter,J.C.,_White,O.R.,_Whitty,B.R.,_Youngman,P.,_Wolfe,K.H.,_Goldman,G.H.,_Wortman,J.R.,_Jiang,B.,_Denning,D.W._and_Nierman,W.C. NA 0:>581 NA NA 18-APR-2008 Aspergillus_fumigatus_A1163_scf_000011_genomic_scaffold,_whole_genome_shotgun_sequence. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_fumigatus_B0YEW0_ASPFC.gb Aspergillus 159121944 PLoS_Genet._4_(4),_E1000046_(2008) fungi DS499604 MFS_maltose_transporter,_putative NA green_and_blue_molds sac_fungi 18404212 581 NA genomic_DNA NA A1163 NA Sartorya_fumigata NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 451804 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_islands_in_the_pathogenic_filamentous_fungus_Aspergillus_fumigatus NA DS499604.1 CTACTCATCGTCATTGATATCAACGACCGTCTGCTTCCATTTGCGAGCCGGAACACGTCGCTTGAACAAAATGTCGATCTCCCGGAAGGACCTGTCCTTCATCTCTGGGATCCATAGCCAAGACATGAAGGTGCAGATAAAGGCAGTGCCGGCCCAGACATAGCCACTCTTGCCGCCCAGGTTCCACTTATCAGCGTTGAGCATGTAGCTGGCAAGGAAGATGCAAGGAATGTTGACCACGTAGTAGGCACCCCGTCCAATACCGGTGGTCAGTGGCCTGAGCCGGACAGAAGATGTCTCACCGATGATGACCCATGAGGCAGGGGCGGGTCCCAAGCAGAATAGGACGGAGACGATCAAGCCGAGGGATGCTTGCGCATTGCTAGCTGCCTTACTGGCGCCGACTGAAGCCGCAATACCTAGCGCGACCAAGAATACACAGTTGATCAATTGGCCATAGACATAGATGGTGCGTCGGCCGAGGTATGTGGTGAGGATCCAAGAGAGCATGACCATGATCCACTGGAGAGCAGAAGTGATGAGACCGAGTGCAAATGCGGTGTTGTCTGCCATACCGGCCT > 83 AFUB_102050 encoded_by_transcript_AFUB_102050A MFS_myo-inositol_transporter,_putative EDP47212.1 NA MVEKSSDPEVPSLSHHESSISIEKQGDAATAREWAQDVNSTTTNTKLKNPLAGLTREQLLNDVEAFAKEKDLEHILDDLRKGALVAQDPREFEQMDALTESEKELLRREKTHRWSQPFMMYFMTSESSRYPPTEFGFNPACQSSVLDLLSCREWIRLLSTVRRSMYSSITHLSYAKQSRFYFAEFNVTDTWMQGLLNGAPYLCSAVIGCWTTAPLNRWFGRRGCIFISCFISFASSFWMAAAHTWWNLLLGRFLLGFAVGAKSTTTPVYGAECSPANIRGALVMMWQMWTAFGIMLGYIASVAFMDVTHPTIPGFNWRLMLGSTAIPPFFVCIQVYFCPESPRWYMMRNRYHDAYKALCKFRPSTFQAARDLYYIHAALKVEEKLREGKHLFREMFTIPRNRRAAQSSFFVMFMQQFCGVNAIMYYSSSMFREAGFDTRMALITSLGCGITNWIFALPAVYTIDTFGRRNLLLTTFPLMCIFLLFTGFSFYIPDQTSRTACVATGIYLFMIVYSPGEGPVPFTYSAEAFPLYIRDIGMSFATATTWGFNFIVSLTWPSLNKSFTPTGAFGWYAAWNFFGWIFCYFCLPETKALSLEELDQVFSVPTTKHINHYRAMLPWYVKKYLLRRDVPPQNQLYDYY bitunicate_ascomycetes Aspergillus_fumigatus_A1163 Aspergillus_fumigatus_A1163 DS499604 453414..454393 Fedorova,N.D.,_Khaldi,N.,_Joardar,V.S.,_Maiti,R.,_Amedeo,P.,_Anderson,M.J.,_Crabtree,J.,_Silva,J.C.,_Badger,J.H.,_Albarraq,A.,_Angiuoli,S.,_Bussey,H.,_Bowyer,P.,_Cotty,P.J.,_Dyer,P.S.,_Egan,A.,_Galens,K.,_Fraser-Liggett,C.M.,_Haas,B.J.,_Inman,J.M.,_Kent,R.,_Lemieux,S.,_Malavazi,I.,_Orvis,J.,_Roemer,T.,_Ronning,C.M.,_Sundaram,J.P.,_Sutton,G.,_Turner,G.,_Venter,J.C.,_White,O.R.,_Whitty,B.R.,_Youngman,P.,_Wolfe,K.H.,_Goldman,G.H.,_Wortman,J.R.,_Jiang,B.,_Denning,D.W._and_Nierman,W.C. NA 0:980 NA NA 18-APR-2008 Aspergillus_fumigatus_A1163_scf_000011_genomic_scaffold,_whole_genome_shotgun_sequence. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_fumigatus_B0YF99_ASPFC.gb Aspergillus 159121944 PLoS_Genet._4_(4),_E1000046_(2008) fungi DS499604 MFS_myo-inositol_transporter,_putative NA green_and_blue_molds sac_fungi 18404212 980 NA genomic_DNA NA A1163 NA Sartorya_fumigata NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 451804 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_islands_in_the_pathogenic_filamentous_fungus_Aspergillus_fumigatus NA DS499604.1 ATGGTGGAGAAGAGTTCCGATCCAGAGGTTCCAAGTCTCTCTCACCATGAGTCTTCTATATCTATTGAGAAGCAAGGAGATGCAGCTACTGCTCGAGAGTGGGCTCAGGATGTGAACAGCACCACGACCAACACTAAACTCAAGAATCCTCTTGCCGGGTTGACTCGAGAACAGCTCCTGAATGACGTCGAGGCTTTCGCGAAGGAGAAAGATCTCGAGCATATCCTCGACGATCTGCGCAAAGGAGCTCTTGTCGCACAGGACCCAAGAGAATTCGAGCAGATGGACGCGCTGACAGAGAGTGAGAAAGAACTTCTTCGAAGAGAGAAGACGCATCGATGGAGTCAGCCGTTTATGATGTATTTTATGACCAGTGAGTCTTCTCGGTATCCTCCTACTGAATTTGGATTTAACCCAGCCTGTCAGTCCTCTGTGCTGGATCTGCTATCGTGCAGGGAATGGATCAGACTGCTGTCAACGGTGCGCAGGAGTATGTACTCTAGCATTACTCATCTGAGCTATGCTAAGCAGAGCAGGTTCTACTTTGCTGAGTTTAATGTCACCGACACTTGGATGCAAGGCCTCCTCAACGGCGCTCCCTATCTCTGCTCGGCCGTCATCGGATGCTGGACCACTGCACCCCTGAATCGCTGGTTTGGTCGCCGCGGATGCATTTTCATCTCCTGCTTTATCTCCTTTGCCTCGTCGTTCTGGATGGCGGCCGCGCATACCTGGTGGAATTTGTTGCTTGGCCGTTTCCTTCTCGGTTTTGCCGTGGGCGCCAAATCCACAACCACCCCTGTGTATGGTGCGGAGTGCTCGCCGGCTAATATCCGCGGTGCCTTGGTCATGATGTGGCAGATGTGGACGGCATTTGGTATTATGCTGGGATATATTGCCTCTGTTGCGTTTATGGATGTGACGCATCCCACAATCCCGGGCTTCAACTGGCGATTGATGCTGGGGTCGACCGCGATCCC > 84 AN5935.2 NA hypothetical_protein XP_663539.1 NA MNDIGLLHAPHGPGQDPLQNMDAHEKDAFDALIRPDDSYTADGTYWADLSLFRKIKFVSSYDAGEAKRELSDIWKMFKADPLSPMSYYFQNMVLPGAGLGLEGYVLFSIGNLKPLFQAAFASCWDHDYEGEHICNAQWLNAIEYLEICGIIVGQILVGIVGDWLGRRWGLIQDAAIMLLGLVMLTAAWGVTQNGWVICYAWSLFIYGIGVGGEYPMTATSGMENAVGSGKVSTKEDRLHRGRKVTSAFLMQGWGQFFNQVLLIILLLCFHHGSGNPPYSTVSAQWTYRISFAIPAVGTLWLVYYRTYHMKAASKQLQAAKKKASVTGYDVNSLKLTFQHFGFRLVATTGAWFANDVFFYGNKLFQSEFIKVISPASTSIMPTWLWNLVNVGVSLCGYYLASFLIDNKLYGRKWMQIIGFLMDFILFIVPAFHFDYYTSPEHIKEFQAMYFLSSFFNQFGPNSVTFLVAAEVFPTPIRATAHGMSAAAGKLGALLASVLYNYIDTQTKFYVVPWFGLAGLVLTFFFLPDTTGLDLKEQERRWKYIREGREQDYHGPAVHPKHLSLWERVRGTGKYYDAELDYKQKVEEYRAEWEAAMSARISEKDKDGEEDADEELLSGHVNNYFYRTSPMFRGMEAKPGKGDDFALPPAARSDDSTQNSVQEK bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_658447 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:1992 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107009).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN5935.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_nidulans_C8V3I5_EMENI.gb Emericella 67539529 Nature_438_(7071),_1105-1115_(2005) fungi XM_658447 NA NA green_and_blue_molds sac_fungi 16372000 1992 I mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_658447.1 ATGAACGATATTGGCCTTCTTCATGCGCCCCATGGGCCGGGCCAAGATCCCCTTCAAAATATGGATGCGCACGAGAAGGACGCTTTTGACGCTCTCATTCGCCCCGATGACAGCTATACTGCGGACGGGACCTACTGGGCGGACTTGTCGCTTTTCAGGAAAATCAAGTTTGTGAGCTCATACGATGCGGGGGAAGCCAAGCGCGAGCTTAGCGATATCTGGAAGATGTTCAAGGCCGATCCCTTGTCGCCAATGTCTTATTACTTCCAAAATATGGTCCTCCCCGGAGCTGGTTTGGGTCTAGAAGGCTACGTCCTCTTTTCGATCGGAAACCTGAAACCCCTTTTCCAAGCTGCCTTTGCCTCGTGCTGGGACCACGACTATGAAGGAGAACATATTTGTAACGCACAATGGCTCAATGCGATAGAATATCTCGAGATTTGCGGTATAATTGTTGGTCAGATCCTCGTCGGTATTGTGGGTGACTGGCTCGGCCGACGATGGGGTTTGATTCAGGACGCCGCGATTATGCTTCTCGGTCTCGTTATGCTTACGGCGGCCTGGGGTGTCACCCAAAATGGCTGGGTTATTTGCTATGCATGGTCTCTATTTATTTACGGTATCGGTGTTGGAGGTGAATACCCCATGACTGCCACCAGCGGTATGGAAAATGCTGTCGGCTCTGGCAAAGTCTCTACCAAAGAAGATCGTCTGCACCGTGGCCGCAAAGTCACCAGTGCTTTCTTGATGCAGGGCTGGGGTCAATTTTTCAACCAGGTCCTGCTCATCATTTTACTGCTTTGCTTCCACCACGGGAGCGGAAACCCGCCCTATTCTACTGTCTCTGCTCAGTGGACCTACCGCATTTCTTTCGCCATTCCCGCTGTTGGTACCTTATGGCTCGTCTACTATCGTACGTACCATATGAAGGCCGCCAGCAAACAGCTGCAGGCCGCAAAGAAGAAGGCGTCGGTTACTGGTTATGATGTAAACTCGCTGAAACTGACCTTCCAACACTTTGGATTCCGTCTGGTCGCAACAACCGGCGCTTGGTTTGCCAACGATGTCTTTTTCTACGGCAACAAGCTGTTCCAGTCCGAGTTTATCAAGGTCATTAGCCCCGCGTCGACATCCATCATGCCTACTTGGCTCTGGAACTTGGTGAACGTTGGAGTCTCGCTCTGTGGTTACTACTTGGCTTCCTTCCTGATCGACAACAAGCTATATGGCCGCAAATGGATGCAGATCATCGGTTTTTTGATGGACTTTATTCTCTTCATTGTTCCCGCCTTCCACTTCGACTATTACACCTCCCCTGAACATATCAAGGAATTCCAGGCCATGTACTTCCTGAGTTCCTTCTTCAACCAATTCGGCCCTAACTCGGTCACTTTCCTGGTTGCCGCAGAAGTATTCCCGACGCCCATCCGTGCCACCGCGCATGGAATGTCCGCCGCTGCGGGAAAACTCGGTGCTCTCCTTGCATCCGTTCTCTACAACTACATCGACACACAGACAAAGTTTTACGTTGTCCCCTGGTTCGGGTTGGCAGGTCTCGTTCTCACCTTTTTCTTCCTCCCTGACACCACCGGGCTTGACTTGAAGGAACAAGAGCGCCGCTGGAAGTACATCCGGGAAGGTCGCGAACAGGACTATCACGGCCCGGCCGTCCACCCCAAGCACCTGTCTCTCTGGGAACGCGTCCGTGGTACCGGCAAGTACTATGATGCGGAGCTCGACTACAAGCAGAAGGTCGAAGAGTACCGCGCTGAATGGGAAGCCGCCATGTCTGCCAGGATCTCCGAGAAGGACAAGGACGGTGAGGAAGACGCCGACGAAGAGCTCTTGTCCGGCCACGTCAACAACTATTTCTATCGCACAAGCCCAATGTTCCGTGGAATGGAAGCAAAACCCGGCAAGGGTGACGACTTTGCTCTTCCTCCCGCTGCGCGGTCAGATGATTCCACACAGAACTCCGTTCAAGAAAAATAG > 85 ANIA_03204 transcript_id=CADANIAT00009862 MFS_alpha-glucoside_transporter,_putative_(AFU_orthologue;_AFUA_4G02650) CBF83195.1 NA MSGSEKKVNLVQVIPAESETDVHEAALSYEFTKDEHTLTFWAAARRHWPALAWGMFMNLATVLKGIDGGVVKGLVGLDVFKATYGYYNASKGEYMLAAQWLSAFNYANLLGAIVGALLSAVAYDRFGPRVMIAVCSVCSIAFIFIQFYSETPAQLFVGQLVNGCIIAFYPICASAYVGEVTPLVLRGFAATMTNLAFSIGSLVASGILKGTEPLATTLSYKIPIASQWALPLVMLSLVYFVPDPPYWLVRKGRTEDALQSLRRLAASGVDVGHKLAHIRETLRLEESFSLQGSTRPSYLECFRGPNLRRLTICVMAYSMQAFTGNVFFISYAVHFMELAGLDAADAFSMNLGLTGVGFLGTCISWFLLSYLGRRTMYLFGCCSLALVLFAVGAVDLAPRQAAARWAQCALMLLCTFIYDLSLGPFCYVLLAEVSSARLRGFTIALSTVACFVWSVVFAVVIPYAMNEDQGNWRGKMGFFFAGTSTLCAVYCYWCLPETRGRTFEELDVLFEQKVPSRKFASATVNINLSTDEGSRREARV bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 BN001306 1436944..1437120 Wortman,J.R.,_Gilsenan,J.M.,_Joardar,V.,_Deegan,J.,_Clutterbuck,J.,_Andersen,M.R.,_Archer,D.,_Bencina,M.,_Braus,G.,_Coutinho,P.,_von_Dohren,H.,_Doonan,J.,_Driessen,A.J.,_Durek,P.,_Espeso,E.,_Fekete,E.,_Flipphi,M.,_Estrada,C.G.,_Geysens,S.,_Goldman,G.,_de_Groot,P.W.,_Hansen,K.,_Harris,S.D.,_Heinekamp,T.,_Helmstaedt,K.,_Henrissat,B.,_Hofmann,G.,_Homan,T.,_Horio,T.,_Horiuchi,H.,_James,S.,_Jones,M.,_Karaffa,L.,_Karanyi,Z.,_Kato,M.,_Keller,N.,_Kelly,D.E.,_Kiel,J.A.,_Kim,J.M.,_van_der_Klei,I.J.,_Klis,F.M.,_Kovalchuk,A.,_Krasevec,N.,_Kubicek,C.P.,_Liu,B.,_Maccabe,A.,_Meyer,V.,_Mirabito,P.,_Miskei,M.,_Mos,M.,_Mullins,J.,_Nelson,D.R.,_Nielsen,J.,_Oakley,B.R.,_Osmani,S.A.,_Pakula,T.,_Paszewski,A.,_Paulsen,I.,_Pilsyk,S.,_Pocsi,I.,_Punt,P.J.,_Ram,A.F.,_Ren,Q.,_Robellet,X.,_Robson,G.,_Seiboth,B.,_van_Solingen,P.,_Specht,T.,_Sun,J.,_Taheri-Talesh,N.,_Takeshita,N.,_Ussery,D.,_vanKuyk,P.A.,_Visser,H.,_van_de_Vondervoort,P.J.,_de_Vries,R.P.,_Walton,J.,_Xiang,X.,_Xiong,Y.,_Zeng,A.P.,_Brandt,B.W.,_Cornell,M.J.,_van_den_Hondel,C.A.,_Visser,J.,_Oliver,S.G._and_Turner,G. NA 0:177 Aspergillus_nidulans_FGSC_A4_CADRE,updated_by_Eurofungbase_with_contributions_fromCADRE_(http://www.cadre-genomes.org.uk),AspGD_(http://www.aspergillusgenome.org)_and_Ensembl_Genomes_(http://www.ensemblgenomes.org). NA 02-OCT-2009 TPA_reasm:_Aspergillus_nidulans_FGSC_A4_chromosome_VI. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_nidulans_C8VIA6_EMENI.gb Emericella 259485327 Fungal_Genet._Biol._46_SUPPL_1,_S2-S13_(2009) fungi BN001306 NA NA green_and_blue_molds sac_fungi 19146970 177 VI genomic_DNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella The_2008_update_of_the_Aspergillus_nidulans_genome_annotation:_a_community_effort NA BN001306.1 ATGTCTGGGTCTGAGAAAAAAGTCAACCTGGTCCAGGTGATCCCTGCCGAGTCAGAAACAGACGTCCATGAGGCAGCGCTCTCGTACGAGTTCACCAAGGATGAGCATACCCTCACCTTCTGGGCCGCTGCCCGGCGGCACTGGCCTGCTCTGGCATGGGGAATGTTCATGAATCTG > 86 AN2614.2 NA hypothetical_protein XP_660218.1 NA MGFPAFLRSGSDREVYSPGLLADIQGVAKQREALVSHEASAAAQFLSRDSLAIRLRGAMMNGLQTLPQWRNTFGKPTGALLGFMNAVYPIAKVAGLFPATWIGDRYGRKKVLYIGFALLPIGAALQGASQNTPMFIVARFLIGFATSFLAQPSPILVTELAYPTHRARATALYNTCFYLGAVLAAWSTFGTFRLQSSWSWRIPSLLQQAIPAFQSAFIFWVPESPRWLMANKKEEEARRILTKYQAGGDENSPLVEFELSEISQALEMEKASEHSPSYVELVRTGPNRHRTALAFLIAFFTQWNGCSVLSYYLTLVLNTIGITEPAQQTLINGMLQIFNWIVAVCGGALLVDRVGRRSLFLIGTSGMLLSYIAWTALNAQFAKTHDQRLGTAVLVFIFIYYFFYDVSWTPLPIAYTAEIFPYTLRGRGMTTNFVGTYLGLVSGQFLNPIAMEDMGWRYYIVFCAILFVMVVAIYLWVPETKGRTLEEIAEIFDGPRSHLTAGAADENRTRLSTKTAEVELREDIATRG bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_655126 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:1587 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107014).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN2614.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_nidulans_C8VKN6_EMENI.gb Emericella 67524312 Nature_438_(7071),_1105-1115_(2005) fungi XM_655126 NA NA green_and_blue_molds sac_fungi 16372000 1587 VII mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_655126.1 ATGGGTTTTCCTGCTTTTCTCCGATCCGGGTCAGACAGGGAGGTGTACTCTCCCGGATTGCTGGCGGACATCCAAGGTGTTGCCAAGCAACGCGAGGCCCTGGTATCGCACGAAGCATCTGCTGCTGCTCAATTTCTTTCTCGCGATTCCCTTGCTATCCGCCTCCGCGGCGCCATGATGAACGGCCTGCAGACGTTGCCTCAATGGCGGAATACCTTCGGCAAACCCACGGGCGCTCTTCTAGGCTTTATGAATGCCGTTTACCCCATCGCCAAGGTCGCCGGATTGTTCCCCGCCACCTGGATCGGAGACCGATACGGAAGGAAGAAGGTCTTGTATATTGGGTTTGCCCTGCTTCCTATCGGGGCGGCTTTGCAAGGCGCGTCGCAAAATACCCCGATGTTCATCGTCGCCCGATTCCTGATCGGCTTTGCAACGTCGTTTCTCGCCCAGCCTTCGCCGATCCTGGTGACCGAGCTGGCATATCCGACGCACCGGGCACGGGCGACGGCTCTATACAACACCTGCTTTTACCTCGGGGCCGTCCTCGCCGCGTGGTCCACATTCGGAACATTCAGGCTCCAGTCGTCGTGGTCCTGGAGAATCCCATCCCTCCTTCAACAAGCCATCCCGGCCTTTCAATCTGCTTTCATCTTCTGGGTCCCCGAGTCTCCTCGGTGGCTCATGGCCAATAAGAAGGAAGAAGAAGCCCGGCGGATCTTGACGAAATACCAAGCTGGTGGCGATGAGAATTCACCCTTGGTGGAGTTTGAGTTGAGTGAAATCTCCCAGGCTTTAGAAATGGAAAAGGCGAGTGAGCACTCGCCCAGCTACGTCGAGCTGGTCCGCACGGGTCCTAACCGCCACCGCACCGCGCTCGCTTTTCTCATCGCGTTTTTCACCCAGTGGAATGGCTGCAGCGTCTTGTCCTATTACTTGACACTCGTTCTCAACACCATTGGCATTACGGAGCCTGCCCAACAGACCCTCATCAATGGTATGCTGCAAATATTCAACTGGATCGTGGCGGTCTGCGGCGGTGCCCTCCTGGTAGACCGCGTGGGTCGCCGTTCGCTGTTCCTTATTGGCACTTCGGGCATGCTTCTTTCCTACATTGCGTGGACTGCGTTAAACGCCCAGTTTGCAAAGACCCACGATCAACGTCTGGGAACGGCGGTCTTGGTGTTCATCTTCATCTACTATTTCTTCTACGACGTGTCCTGGACGCCTCTGCCCATCGCTTACACCGCCGAAATCTTCCCGTATACCCTGAGAGGTCGGGGAATGACGACCAACTTTGTCGGGACCTATCTCGGCCTCGTCAGCGGACAGTTCCTCAATCCCATTGCCATGGAAGACATGGGCTGGCGATATTATATCGTTTTCTGCGCTATCTTGTTCGTCATGGTGGTCGCAATTTACCTCTGGGTTCCGGAAACCAAGGGTCGCACTCTGGAAGAGATCGCAGAGATCTTCGATGGCCCTCGAAGTCATCTGACTGCAGGCGCCGCTGATGAGAACAGGACACGACTCTCGACAAAGACAGCTGAAGTGGAGCTTAGGGAGGATATAGCAACTCGAGGTTAA > 87 AN8972.2 NA hypothetical_protein XP_682241.1 NA MQSPEPQPCHLPSVTIKPAPSTSPAPIQFGEFPAHSDARTGLSKMHDGGTYSNRPEPLAPTLGLGVDSQIQAATLCSVSSTFLCLSPGRSCSHSQILKTTVSAVGQLGKLDDSCGMYLSREDGRMVAGVWHKESPSPFPNMAQSVLARSQPRRTWPAATVLTGLKESLFDVGRGHDWVPRGLAPAPASGNRYLLARSSGGPPRAVLDLSASSVFVNDYYSELFGYDQGVTGGLLELPSFYKYFPEITADMCPEDENLSSCRSQRSTNQGIAVAAYNLGCFLGAILTVFIGNAIGRRRTIFCGCVTMTTGAILQCTAYSLPHWIVGRIVTGIGNGMNTSTVPTWQSESAKAHDRGKLVMIEGMLITGGICLSYWINYGFAFLPDHEVSWRFPIAFQIIFAVTIFISIMNLPESPRWLVMKGRDDEAVEILELLNEKPRDDPYIQNELLSIKETVMEMNKGSFRSLFKMSEYREFHRVALAYVNQMFQQISGINLITYYAPNIYTDIGLGGGNTAKLMAAANGTEYLLAAFIPIFIIEKVGRRPLMLFGAAGMSISMAILAGTHYRRETYDDTKAGVAQAVFLFVFNTFFAIGWLGMTWLYPAEIVPLRIRAPTNALSTSANWIFNFMVVMITPVAFENIKHNTYTIFAVINAFMFPVVYFCFPETRYRSLEEMDAIFKKSDGIWSAVQHSIKEPYRYDKHGQLKPEYLEEAIRRESVRHVEGKFESEDSTNESQEAKGTETRLE bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_677149 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:2232 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107002).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN8972.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_nidulans_C8VL81_EMENI.gb Emericella 67903969 Nature_438_(7071),_1105-1115_(2005) fungi XM_677149 NA NA green_and_blue_molds sac_fungi 16372000 2232 VII mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_677149.1 ATGCAAAGCCCAGAGCCTCAACCGTGCCATTTGCCGAGCGTCACTATCAAGCCGGCACCTTCTACTAGCCCGGCCCCGATCCAGTTTGGAGAATTTCCGGCTCATTCCGATGCTCGGACGGGTTTGAGTAAGATGCACGATGGGGGGACCTACTCCAATCGCCCCGAGCCCTTGGCGCCGACCTTAGGGCTTGGCGTTGACTCACAGATCCAGGCGGCGACGCTGTGCTCAGTCTCGAGCACTTTCCTTTGTCTCAGCCCTGGACGATCATGCAGCCACAGTCAAATTTTGAAAACGACCGTCTCAGCGGTTGGCCAACTTGGGAAGCTCGATGATAGCTGCGGCATGTACCTGAGCCGCGAAGACGGCAGGATGGTGGCCGGTGTGTGGCATAAGGAATCCCCTAGTCCTTTCCCGAACATGGCCCAATCCGTATTGGCCAGATCTCAGCCACGGCGTACTTGGCCCGCAGCCACCGTTCTCACTGGCTTGAAGGAAAGTCTTTTTGACGTAGGCCGGGGACATGACTGGGTCCCGCGGGGGTTGGCGCCTGCCCCAGCTTCTGGTAACCGATATCTGTTAGCTCGCTCCTCTGGTGGGCCGCCAAGGGCAGTTCTTGACCTCTCGGCCTCAAGCGTTTTTGTTAACGATTATTACTCAGAGCTTTTCGGTTATGACCAAGGCGTCACAGGCGGTCTCCTCGAGCTGCCATCCTTCTACAAGTACTTCCCGGAAATCACTGCAGACATGTGCCCGGAAGACGAAAACCTCAGCTCCTGCAGGTCGCAGCGTAGCACCAACCAGGGCATCGCTGTCGCCGCATACAACCTCGGCTGCTTTCTCGGAGCTATCTTGACCGTGTTCATCGGTAACGCAATCGGCCGTCGCAGGACCATTTTCTGCGGCTGCGTGACTATGACTACTGGCGCTATCCTGCAATGCACTGCTTACAGCCTCCCTCATTGGATCGTTGGACGAATCGTGACTGGAATCGGTAACGGCATGAACACCAGTACGGTTCCAACCTGGCAGTCAGAGTCTGCGAAAGCGCACGATCGTGGTAAACTGGTGATGATCGAGGGTATGTTGATCACCGGCGGAATTTGTCTCAGCTACTGGATCAACTATGGTTTCGCCTTCCTTCCCGACCACGAGGTCTCATGGCGCTTCCCAATCGCCTTTCAGATTATTTTCGCCGTTACTATCTTCATATCAATTATGAACCTCCCCGAGTCCCCTCGTTGGCTGGTTATGAAAGGTCGGGACGACGAAGCGGTTGAGATTCTTGAACTCCTGAACGAGAAGCCGCGCGACGACCCTTACATCCAGAACGAACTGCTGTCAATCAAGGAAACTGTGATGGAAATGAACAAGGGATCATTCCGCAGCCTGTTCAAGATGAGCGAGTACCGTGAATTCCACCGTGTCGCGCTCGCCTACGTCAATCAGATGTTCCAGCAGATTTCCGGCATCAACCTCATCACTTACTATGCTCCCAATATCTACACGGACATTGGTCTCGGTGGCGGTAACACCGCGAAGCTCATGGCCGCCGCCAACGGCACCGAGTACCTCCTCGCCGCGTTCATTCCCATTTTCATTATCGAGAAAGTCGGCCGTCGCCCGTTGATGCTCTTTGGCGCTGCTGGAATGTCTATCTCCATGGCCATTCTCGCGGGTACACACTACCGCCGCGAAACCTACGACGACACCAAGGCCGGTGTGGCCCAGGCAGTCTTCCTCTTTGTTTTCAACACCTTCTTCGCCATCGGTTGGCTCGGCATGACCTGGCTGTATCCCGCCGAGATCGTCCCGCTCCGTATCCGTGCGCCTACCAATGCGCTGTCGACTTCGGCGAACTGGATCTTCAACTTCATGGTGGTCATGATCACCCCTGTTGCCTTTGAGAACATCAAACATAACACGTACACAATCTTTGCGGTCATTAATGCTTTTATGTTCCCCGTCGTCTACTTCTGCTTCCCCGAAACCCGTTACCGTTCGCTCGAAGAGATGGACGCAATCTTCAAAAAGTCGGACGGAATCTGGAGCGCTGTGCAGCATTCTATCAAGGAGCCGTACCGCTATGATAAACACGGTCAGCTTAAGCCTGAGTACCTCGAGGAGGCGATCAGGCGAGAAAGTGTGCGTCATGTGGAGGGCAAGTTCGAGAGTGAGGACAGCACCAATGAGAGTCAGGAGGCGAAGGGGACGGAGACGAGACTGGAGTAA > 88 AN8889.2 NA hypothetical_protein XP_682158.1 NA MTVRESQKPDNGQLAVVFETPWWSPQLRRLSFCILSLIFFSSSNGFDGSLVNGLQSLDSWMGFMGQPSGALVSTIFAAWCSNRYGRKQCVWIGIAFILAGSILGAAAPNDTVYIVSRAVIGVSSGMVSNAPPLLLNEIAYPAHRSISSCLFMIGYYFGAVISSWVTFATRTYASSWSWRLPTLLQMLCPLVAIPGFLLTPESPRWLIGQNRVEEARKVLADLHASGDLTAPLVIKEIHEIQEAISTERESAASSSYSDMITTPGNRHRLLITVTLGIFSQWSGNGVVSYYLAMVLDTVGVTATKDQLLISGCLQIWNLIFGTIGAVLVERAGRRPLFLTSAGVMLVSYIIITGLSGSFASTGSAPMGTAVIPFIFIYFAGYDIALTPLLVAYPCEIWPFALRSRGLSVAWFSAIGALIFNTFVNPIALSAIGWRYYFVFVAILICYGLTSWFVYPETKGYNLESISHIFDGNHQPGHDSEKATSSEDCIEKVPESREVERV bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_677066 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:1506 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107002).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN8889.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_nidulans_C8VLT0_EMENI.gb Emericella 67903803 Nature_438_(7071),_1105-1115_(2005) fungi XM_677066 NA NA green_and_blue_molds sac_fungi 16372000 1506 VII mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_677066.1 ATGACTGTACGGGAATCCCAGAAACCCGACAATGGGCAGCTGGCGGTCGTTTTTGAGACCCCATGGTGGAGTCCCCAATTGCGTCGTCTCAGTTTCTGCATATTGTCCTTGATCTTCTTTTCTTCTTCAAATGGCTTTGACGGCTCTTTGGTCAATGGTCTCCAGTCATTAGACAGCTGGATGGGCTTTATGGGACAGCCGTCTGGCGCACTGGTCTCAACCATCTTTGCTGCCTGGTGCAGTAACAGGTATGGTCGAAAGCAGTGCGTTTGGATAGGCATTGCTTTTATCCTCGCTGGTTCAATTCTGGGCGCCGCTGCTCCCAACGACACTGTCTACATAGTCTCCCGCGCTGTCATCGGCGTGAGCTCTGGGATGGTTAGCAATGCGCCTCCTCTGTTACTGAATGAGATTGCCTACCCCGCCCATCGGAGTATATCATCTTGTCTGTTCATGATTGGATACTACTTTGGGGCCGTCATTTCTTCTTGGGTTACGTTTGCAACTCGCACATACGCCTCCTCATGGTCATGGAGGCTGCCTACTCTCCTGCAGATGCTCTGCCCTCTGGTTGCTATTCCTGGGTTTCTTCTTACTCCTGAGAGCCCTCGGTGGCTGATTGGGCAGAACCGCGTGGAGGAAGCCCGTAAGGTGCTTGCGGATTTGCACGCAAGCGGTGACCTTACCGCACCCTTGGTCATAAAAGAAATTCATGAGATTCAAGAGGCGATTTCTACGGAGAGAGAATCTGCTGCGTCATCAAGTTATTCGGACATGATCACGACGCCCGGGAACCGTCATCGTCTCTTGATAACTGTGACGCTTGGTATCTTCTCTCAGTGGTCTGGCAACGGTGTTGTATCCTACTATCTGGCCATGGTGCTGGATACTGTCGGTGTAACGGCGACAAAAGACCAGCTACTTATATCCGGATGTCTCCAGATCTGGAACCTTATATTCGGCACCATTGGCGCCGTACTGGTCGAGCGGGCTGGTAGGCGTCCTTTGTTCCTGACATCCGCAGGTGTAATGCTTGTCAGTTATATTATCATTACCGGGCTCTCGGGTTCATTTGCATCCACTGGCTCCGCGCCGATGGGGACAGCAGTAATCCCGTTTATCTTCATTTACTTTGCAGGTTACGATATAGCTTTAACCCCTTTGTTGGTCGCATACCCCTGTGAGATCTGGCCGTTCGCACTTCGATCCCGTGGTCTGAGTGTCGCCTGGTTCTCAGCAATCGGAGCATTGATTTTTAACACTTTCGTTAACCCCATCGCGCTGTCAGCTATCGGGTGGAGGTACTATTTCGTGTTTGTTGCTATCCTCATTTGCTACGGTCTCACGTCATGGTTCGTTTACCCTGAGACAAAAGGGTATAATCTAGAAAGTATATCCCATATTTTCGATGGCAATCACCAGCCTGGCCATGATTCGGAAAAGGCCACTTCATCTGAAGACTGTATTGAGAAGGTTCCCGAATCTCGTGAAGTGGAGCGCGTATAA > 89 AN9295.2 NA hypothetical_protein XP_682564.1 NA MAGLQLNVDWKSNRRAIAYCLVAAIGALCYGYDTIYYTGIQGMTWFAKDYGEQDPDGSYSLGTAFLSLSASIIYVGELVGALAAAPINEAFGRRAVFFSASLCIIAGAIVQACSFGSHPVFYVGRVLIGLGVGQFTATCLIYIGEVAPSAIRGPALMCFQFMQSISQLVGACVNQGTQSIQSAQSYRIPMCLLVVLPGTMLLCLIFTPESPVWYMTKDKRDAAIKALRKINRSNRDYDPTMDIQTIENQVQLEREQAKDATWASLITDPVERRKLFYACGAMFVQQINGIQFWYTYGVVFAQSIGVADPFTINTIIYVLQIVTVAISVLLGNKINRRTNLIVCSIGILVSLITVGGLGTTRSPDGSFSRGVGIGIVVLAYINIIFYNFSIGTLSYSIASEMSVGRNRNKITSCAMGVFFVTVWLMVFTSPYIYYDGNLGPMIGFVYGGTTLFLLAYSWFCVGETAGRSNADIERLFQDRVPARQWATYVIPDDGLSAGGQKKGTDEEQIEMA bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_677472 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:1539 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107000).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN9295.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_nidulans_C8VQP7_EMENI.gb Emericella 67904615 Nature_438_(7071),_1105-1115_(2005) fungi XM_677472 NA NA green_and_blue_molds sac_fungi 16372000 1539 VIII mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_677472.1 ATGGCAGGCCTTCAGCTTAACGTCGACTGGAAGTCGAATCGGCGGGCAATCGCTTATTGCCTGGTGGCGGCCATCGGTGCCCTCTGTTATGGTTATGATACAATCTACTATACGGGAATTCAGGGCATGACCTGGTTTGCCAAAGACTATGGAGAGCAAGACCCAGACGGTTCATACTCGCTTGGAACGGCGTTCCTCTCGCTGTCTGCCAGTATCATCTATGTGGGCGAGCTTGTCGGCGCCCTGGCCGCCGCCCCGATCAACGAGGCATTCGGTCGACGCGCTGTCTTCTTCTCGGCCTCTCTCTGCATCATCGCCGGAGCCATCGTCCAGGCCTGCTCGTTCGGCTCGCACCCTGTGTTTTACGTCGGCCGTGTCCTGATTGGTCTCGGTGTTGGGCAGTTCACTGCCACCTGTCTGATTTATATCGGCGAGGTTGCCCCATCGGCCATCAGAGGTCCTGCCCTCATGTGCTTCCAGTTCATGCAATCTATTTCCCAGCTCGTCGGTGCCTGCGTCAACCAGGGCACGCAGAGCATCCAGAGCGCTCAGTCCTACCGCATCCCTATGTGCCTCCTCGTCGTCCTCCCCGGCACAATGCTGCTGTGCCTGATCTTCACACCCGAAAGCCCGGTGTGGTACATGACAAAAGACAAGCGCGATGCGGCCATCAAGGCGCTCCGCAAGATCAACCGCAGCAACCGCGACTACGATCCAACTATGGACATCCAGACCATCGAAAACCAGGTCCAGCTCGAACGTGAGCAAGCTAAGGACGCCACCTGGGCTTCTCTGATCACAGACCCTGTCGAGCGCCGGAAACTCTTCTACGCGTGCGGCGCCATGTTCGTGCAGCAGATCAACGGTATCCAGTTTTGGTATACCTACGGCGTTGTCTTTGCGCAGTCCATCGGTGTTGCGGACCCCTTCACCATCAATACCATTATCTACGTGCTGCAAATCGTCACAGTCGCTATCTCCGTCCTCTTGGGAAACAAAATCAACCGCCGCACAAACCTTATCGTCTGCTCAATCGGCATCCTCGTTTCCCTGATCACCGTCGGCGGCCTAGGCACCACCCGCTCCCCCGATGGCTCCTTCTCCCGCGGCGTCGGTATCGGCATCGTCGTCCTCGCATATATCAACATTATCTTTTACAACTTCTCTATCGGCACGCTCTCGTACTCCATCGCATCGGAGATGTCCGTTGGTCGGAACAGAAACAAGATCACCTCGTGCGCGATGGGCGTATTCTTCGTGACCGTCTGGCTCATGGTCTTTACGAGTCCGTATATCTACTATGACGGCAACCTAGGTCCCATGATTGGCTTTGTCTACGGCGGCACAACGCTGTTCTTGCTGGCTTACTCGTGGTTCTGCGTGGGCGAGACGGCGGGGCGCAGCAACGCGGACATTGAGCGGTTGTTCCAGGATCGCGTTCCTGCTAGGCAGTGGGCGACATATGTCATTCCTGATGATGGGCTCAGTGCAGGAGGGCAGAAGAAGGGGACAGATGAGGAGCAGATTGAGATGGCTTAG > 90 AN0713.2 NA hypothetical_protein XP_658317.1 NA MDKGSVDMVEQADKQQLGYLADSEDQKLSKWDSLKKYPWTFFWCLYAVWCVLLVSFENQAAGVVISIPQFRQDFGSLYEDSYVLDSKWQSAFSGGPVASAVVGALSSGQIADTFGRKWTILGALLISVAAVALEFVSTTNEMFFGGKFLNGFALGALASIPVTYVGEISPLALRGTLTCLTALAYCIGPFTVALITNTTGTYTTRWAYRSVFAAQWGFAAIALSLVLFMPESPWWLVSRGRESDALSSLSRLGYNNGEQTKKLSAIKTTLDQIRRETEGVTYAECFRTSNLRRTIISIAPLSIQAMSGIVFAASYSTYYFQLAGYTDAMSFRLQIVQQVMSIVGNLMSYLLIDRLGRRNLMLYGLGIMTCILMITGGLGVVASDGSNPNSGGAVKGTVALILLYCWWYNCTIGAAGYTLLAEVSTSRLRIKTIAIGLALQNALYTMWSFVLPYLFNPDKADLGAKVTFIFGGLSVISLVYLWFYQPETAGRTYAELDEMFAKRVPAWKFKTYHTDSQAMGEAAREGRNVKRGV bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_653225 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:1602 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107015).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN0713.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_nidulans_C8VRC7_EMENI.gb Emericella 67516862 Nature_438_(7071),_1105-1115_(2005) fungi XM_653225 NA NA green_and_blue_molds sac_fungi 16372000 1602 VIII mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_653225.1 ATGGACAAAGGCAGCGTCGACATGGTTGAGCAAGCCGACAAGCAGCAGCTCGGCTACCTCGCCGATTCGGAAGACCAGAAGCTGAGCAAATGGGACAGCCTTAAAAAGTACCCATGGACCTTCTTCTGGTGTCTCTATGCCGTCTGGTGTGTTCTCCTGGTCAGCTTCGAGAACCAGGCAGCTGGAGTCGTCATCTCAATCCCGCAATTCCGCCAGGATTTCGGCAGCTTGTACGAAGATAGCTATGTCCTCGATAGCAAGTGGCAATCGGCCTTCAGCGGCGGTCCCGTCGCTTCTGCCGTCGTGGGCGCCCTCTCCTCTGGTCAAATTGCAGATACCTTCGGTCGTAAATGGACAATCCTCGGCGCCCTGTTGATCTCCGTGGCCGCCGTAGCCCTTGAGTTCGTATCTACCACGAACGAGATGTTCTTCGGTGGAAAGTTCCTCAACGGCTTCGCTCTCGGTGCTCTCGCCTCCATCCCCGTCACCTACGTTGGCGAAATCTCCCCTCTAGCGCTTCGCGGAACGCTCACTTGTCTAACCGCATTGGCTTACTGTATTGGCCCCTTCACCGTCGCCCTCATTACAAACACCACAGGCACCTACACCACCCGCTGGGCCTATCGCTCTGTTTTCGCCGCCCAATGGGGCTTCGCAGCCATCGCCCTCTCACTTGTCCTTTTCATGCCCGAGTCCCCTTGGTGGCTCGTCTCCAGGGGCCGGGAGTCAGACGCCCTCTCCAGCCTTTCCCGCCTTGGGTACAACAACGGCGAACAAACCAAGAAACTTTCCGCTATCAAGACAACACTCGATCAGATCCGCCGCGAAACTGAAGGCGTCACCTACGCCGAGTGCTTCCGCACCTCCAACCTCCGCCGCACAATCATCTCTATCGCCCCACTCTCCATCCAGGCCATGTCCGGCATCGTCTTCGCCGCCTCCTACAGCACTTACTACTTCCAGCTAGCAGGGTACACTGACGCCATGAGCTTTCGTCTTCAAATTGTACAGCAAGTCATGTCGATTGTCGGGAATCTCATGTCCTACCTCTTGATCGACCGCCTCGGCCGCCGCAACCTCATGCTTTACGGCCTTGGCATCATGACCTGCATCCTCATGATTACGGGTGGACTTGGCGTCGTGGCATCCGACGGAAGTAACCCTAACTCCGGCGGTGCTGTCAAGGGAACCGTCGCGCTGATTCTCCTCTACTGCTGGTGGTATAACTGCACCATCGGGGCAGCGGGATACACGCTGCTCGCAGAGGTCTCAACCTCTCGTCTCCGGATTAAGACAATAGCCATTGGCCTTGCCTTGCAAAACGCCCTCTACACGATGTGGTCCTTTGTTCTCCCGTACCTATTTAACCCAGACAAGGCGGATCTCGGCGCGAAAGTGACGTTTATCTTTGGTGGGCTGTCGGTTATCTCCCTTGTCTATTTGTGGTTTTATCAGCCGGAGACGGCGGGAAGGACCTATGCGGAATTGGACGAGATGTTTGCGAAGAGGGTTCCGGCTTGGAAATTCAAGACGTATCACACGGATTCTCAAGCTATGGGCGAGGCGGCTAGGGAGGGACGTAATGTGAAGCGGGGTGTTTAG > 91 An02g07850 unnamed_protein_product;_Phenotype:_Disruption_strains_showed_much-reduced_uptake_of_glucose_at_low_concentrations_and_growth_was_particularly_affected_in_low-glucose_medium.;_Similarity:_the_ORF_encoded_protein_also_shows_similarity_to_other_hexose_transporters.;_Title:_strong_similarity_to_high-affinity_glucose_transporter_HGT1_-_Kluyveromyces_lactis;_plasma_membrane;_See_PMID_8830679 NA CAK37748.1 NA MPYLLVTLCCLFACLGSFLFGYDSGVISSVIDQDSFRYRFHNPSAAATGGIVASYNGGAILGSVFVSYLSDPWGRRPVLFTGGLLASLGAALQAGAVNVAMLIAGRLIAGLAIGLMSAIIPVYCSELSPPRIRGFLGSLQQWMIGLGVVVAQWVGYGCSLRTGDFSWSFPLAFQAVPAVILSCGVWFLPESPRWLIEKGNPDAGWAVLNRLHLPRGQLNALPVESEFERISAGIAEARHSANHSWRQLLFAQPNWRKRVLLACGMQVFTQCSGTNVLQNYNPGLYRSLGLSQSTSLILQGIWGALAQFWNTVFILFIDRVDRRKLLIPSLLGMGATMCVEAILGQVYNNFESVASPNHSAVRAAIAVFFVFSFFYTSLGLISWIYQSEIFPTAIRARGSSVATATNWSLNLVFAQCSPIAQSRIQFKYFYCFAAFNWVAAGLVWTFYPETAGKSLEEIDRLFTAETSMPAYDADKPHVSLPNSKAKDSLVVFSTQDTT bitunicate_ascomycetes Aspergillus_niger Aspergillus_niger AM270019 28285..29328 Pel,H.J.,_de_Winde,J.H.,_Archer,D.B.,_Dyer,P.S.,_Hofmann,G.,_Schaap,P.J.,_Turner,G.,_de_Vries,R.P.,_Albang,R.,_Albermann,K.,_Andersen,M.R.,_Bendtsen,J.D.,_Benen,J.A.,_van_den_Berg,M.,_Breestraat,S.,_Caddick,M.X.,_Contreras,R.,_Cornell,M.,_Coutinho,P.M.,_Danchin,E.G.,_Debets,A.J.,_Dekker,P.,_van_Dijck,P.W.,_van_Dijk,A.,_Dijkhuizen,L.,_Driessen,A.J.,_dEnfert,C.,_Geysens,S.,_Goosen,C.,_Groot,G.S.,_de_Groot,P.W.,_Guillemette,T.,_Henrissat,B.,_Herweijer,M.,_van_den_Hombergh,J.P.,_van_den_Hondel,C.A.,_van_der_Heijden,R.T.,_van_der_Kaaij,R.M.,_Klis,F.M.,_Kools,H.J.,_Kubicek,C.P.,_van_Kuyk,P.A.,_Lauber,J.,_Lu,X.,_van_der_Maarel,M.J.,_Meulenberg,R.,_Menke,H.,_Mortimer,M.A.,_Nielsen,J.,_Oliver,S.G.,_Olsthoorn,M.,_Pal,K.,_van_Peij,N.N.,_Ram,A.F.,_Rinas,U.,_Roubos,J.A.,_Sagt,C.M.,_Schmoll,M.,_Sun,J.,_Ussery,D.,_Varga,J.,_Vervecken,W.,_van_de_Vondervoort,P.J.,_Wedler,H.,_Wosten,H.A.,_Zeng,A.P.,_van_Ooyen,A.J.,_Visser,J._and_Stam,H. NA 0:>1044 NA NA 17-FEB-2011 Aspergillus_niger_contig_An02c0240,_genomic_contig. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A2QDP7_ASPNC.gb Aspergillus 134056831 Nat._Biotechnol._25_(2),_221-231_(2007) fungi AM270019 NA NA green_and_blue_molds sac_fungi 17259976 1044 NA genomic_DNA NA CBS_513.88 NA Aspergillus_niger_Tiegh. NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5061 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_the_versatile_cell_factory_Aspergillus_niger_CBS_513.88 NA AM270019.1 CTATGTAGTATCCTGTGTGCTAAATACCACCAGAGAATCCTTAGCTTTTGAATTTGGCAGTGAAACGTGAGGCTTGTCTGCATCATAAGCGGGCATCGAGGTTTCTGCAGTAAAGAGACGGTCAATTTCCTCGAGCGATTTGCCGGCGGTCTCTGGATAGAAGGTCCAGACGAGACCCGCCGCAACCCAGTTGAAGGCCGCAAAACAGTAGAAATATTTGAACTGAATTCGTGACTGGGCGATTGGCGAACACTGAGCGAAAACCAGATTCAGACTCCAATTCGTGGCGGTGGCTACAGAAGAGCCCCGGGCGCGAATAGCAGTGGGGAAAATTTCGGATTGATAGATCCAAGAGATGAGCCCGAGACTAGTATAGAAGAAAGAGAAGACGAAGAATACAGCGATTGCAGCACGAACGGCACTGTGATTCGGTGACGCCACGCTTTCAAAGTTATTGTACACCTGCCCCAAGATGGCCTCCACGCACATGGTGGCGCCCATACCCAGCAACGACGGAATGAGAAGCTTGCGACGGTCGACCCGATCGATGAAGAGTATGAATACGGTGTTCCAAAACTGAGCCAATGCACCCCAGATGCCCTGCAGGATGAGCGATGTGGACTGCGACAAGCCCAAGGATCGGTATAATCCTGGGTTATAATTCTGGAGCACATTCGTGCCCGAGCATTGTGTGAAAACCTGCATGCCACAGGCAAGCAGCACACGCTTGCGCCAATTAGGCTGTGCGAACAAAAGCTGTCGCCAGGAGTGGTTGGCTGAATGCCGGGCCTCCGCAATACCCGCGGAGATTCGCTCGAATTCCGATTCGACTGGTAGAGCATTCAGCTGTCCCCGAGGTAGATGGAGGCGGTTCAAGACCGCCCAACCAGCATCTGGGTTGCCCTTTTCTATGAGCCAACGAGGGGACTCAGGGAGAAACCAGACGCCACAGCTAAGAATCACGGCGGGGACTGCTTGAAATGCCAAGGGGAAACTCCAGCTGAAATCTCCTGTACGAAGCGAACAGCCGTATCCCACCCATTG > 92 An04g10090 unnamed_protein_product;_Pathway:_the_K._lactis_protein_RAG5_is_involved_in_the_regulation_of_HGT1.;_Remark:_the_K._lactis_HGT1_shows_26_to_31%_amino_acid_identity_to_the_Hxtp_family_of_glucose_transport_elements_in_S._cerevisiae.;_Title:_strong_similarity_to_high-affinity_glucose_transporter_HGT1_-_Kluyveromyces_lactis;_See_PMID_8830679 NA CAK39068.1 NA MHQVLKEDGTTVEHDERGTLGVEAVDMLPSYGPDGVRGLFSSGFGYDQGVISVINVMPQFHAAIPQAESEFGKGFMTGMLLLGAFVGCIFMPYLADRISRKWALTVVVIIFDIGAVIQTSAQNYGMLVAGRAIGGIGVGTLAMGAPLYISEISPPNLRGTLLVLESICLVSGAVIAYWVTFGMRLVDSEASFRVPFGLQMVSATLVGVGIHFFPYSPRWLALVDRQEDCLKSLSRLRGLPLSDQKVQAEYNAIIGEVRAQKLMEQQQRPGVTGIKREALIWMDLFRPQTWKRTAVGVGVGFFQQFSGVNAFIYYAPTLFQLIDQKGEMSLILSGVFNTLQLLTVLVCFLTIDKVGRRPLAILGGFLMGACYIIIAVLMALYGPDWANPSAGWGCVAVAFLYILIYGNTYSPLGWALPSEVFPNALRSKGVALSTCVNWLSNFIVGIVTPVMMANIGYGTYVFFAACCVLAGTWAFFLVPETTGRTLEQIDEVFGNISKQAHHEFMRETTFQAARGEGRLDV bitunicate_ascomycetes Aspergillus_niger Aspergillus_niger AM270097 76901..77028 Pel,H.J.,_de_Winde,J.H.,_Archer,D.B.,_Dyer,P.S.,_Hofmann,G.,_Schaap,P.J.,_Turner,G.,_de_Vries,R.P.,_Albang,R.,_Albermann,K.,_Andersen,M.R.,_Bendtsen,J.D.,_Benen,J.A.,_van_den_Berg,M.,_Breestraat,S.,_Caddick,M.X.,_Contreras,R.,_Cornell,M.,_Coutinho,P.M.,_Danchin,E.G.,_Debets,A.J.,_Dekker,P.,_van_Dijck,P.W.,_van_Dijk,A.,_Dijkhuizen,L.,_Driessen,A.J.,_dEnfert,C.,_Geysens,S.,_Goosen,C.,_Groot,G.S.,_de_Groot,P.W.,_Guillemette,T.,_Henrissat,B.,_Herweijer,M.,_van_den_Hombergh,J.P.,_van_den_Hondel,C.A.,_van_der_Heijden,R.T.,_van_der_Kaaij,R.M.,_Klis,F.M.,_Kools,H.J.,_Kubicek,C.P.,_van_Kuyk,P.A.,_Lauber,J.,_Lu,X.,_van_der_Maarel,M.J.,_Meulenberg,R.,_Menke,H.,_Mortimer,M.A.,_Nielsen,J.,_Oliver,S.G.,_Olsthoorn,M.,_Pal,K.,_van_Peij,N.N.,_Ram,A.F.,_Rinas,U.,_Roubos,J.A.,_Sagt,C.M.,_Schmoll,M.,_Sun,J.,_Ussery,D.,_Varga,J.,_Vervecken,W.,_van_de_Vondervoort,P.J.,_Wedler,H.,_Wosten,H.A.,_Zeng,A.P.,_van_Ooyen,A.J.,_Visser,J._and_Stam,H. NA 0:128 NA NA 17-FEB-2011 Aspergillus_niger_contig_An04c0370,_genomic_contig. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A2QKC2_ASPNC.gb Aspergillus 134074955 Nat._Biotechnol._25_(2),_221-231_(2007) fungi AM270097 NA NA green_and_blue_molds sac_fungi 17259976 128 NA genomic_DNA NA CBS_513.88 NA Aspergillus_niger_Tiegh. NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5061 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_the_versatile_cell_factory_Aspergillus_niger_CBS_513.88 NA AM270097.1 ATGCATCAAGTGTTGAAAGAGGATGGTACTACAGTGGAGCATGATGAGAGAGGCACCCTTGGTGTTGAAGCGGTGGATATGCTGCCCTCATATGGCCCGGATGGCGTCAGAGGGCTTTTCAGCTCGGG > 93 ANI_1_604044 NA MFS_sugar_transporter XP_001390819.1 NA MGYATFWRRLSPRQLNVMIQTLSLVCIFFEGYDQGVMGGVNSSPRYVTEVGIGEPDGTVTDTTHQGGIVSIYYLGCIFGCFGGGWLADRLGRINGLLVGSLLALVGGALQAAAQSSDFMLVARVVTGVGTGALTGIAPVLVSETSTADHRGAFLGYVFIANYLGISVAYWLSFGLAFINNGYSDVRWRFLLAFQCIPALILLLFIKMLPDSPRFLASVGRYDEAQQVLNKIRCHRASQSEIDLEYKEIIATVQEGKPSSPLQFAKILIGKGGSPGSNLGRRAWLCIWLQIMASWTGITAVTAYSPVLLRQAGYSELTQNGLAGGLNTIGILGTIISTQIVDRIGRRKCLMLGSIILFVVELVAGSVYEASLHQPDKASQFAPAAVAMLFLFNLGYAATWGTVAFLIPTEIFPSDLRAQGNGFGITGWAVGVGMTTLVNPIMFASIGSRSYFLLAGLNLLWVPTIYLFYPETRNRTLESIDYLFSTSSPFYWDMERAFRLCMDGKVEKHANELAIKVAGQDEAQQEFHENIQNSV bitunicate_ascomycetes Aspergillus_niger_CBS_513.88 Aspergillus_niger_CBS_513.88 XM_001390782 NA NA NA 0:1605 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_166521).Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_niger_CBS_513.88_MFS_sugar_transporter,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A2QL46_ASPNC.gb Aspergillus 145236341 NA fungi XM_001390782 NA NA green_and_blue_molds sac_fungi NA 1605 NA mRNA NA NA NA Aspergillus_niger_Tiegh. NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 425011 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus NA NA XM_001390782.1 ATGGGGTATGCAACGTTTTGGAGGCGGTTATCCCCACGCCAACTCAATGTTATGATTCAGACTCTTTCTCTCGTTTGCATATTCTTCGAGGGATATGATCAAGGTGTCATGGGAGGCGTCAACAGCTCTCCCAGATACGTTACAGAGGTTGGAATTGGCGAACCAGATGGCACAGTAACCGACACCACCCATCAGGGAGGCATTGTCAGCATCTACTACCTTGGATGTATTTTCGGTTGTTTCGGAGGTGGCTGGCTGGCTGATCGGTTAGGCCGCATCAATGGCCTCCTGGTCGGTTCTTTGCTTGCGCTTGTGGGAGGTGCTTTGCAAGCTGCAGCTCAGAGTTCAGATTTCATGCTCGTCGCCAGGGTAGTGACAGGCGTTGGCACTGGTGCATTGACTGGCATAGCACCAGTACTGGTATCAGAGACATCGACAGCTGATCACCGCGGAGCCTTCCTTGGATATGTTTTCATTGCAAACTATCTAGGAATCTCCGTCGCATACTGGCTGTCATTTGGTCTTGCTTTCATCAATAATGGTTATTCCGATGTTCGCTGGCGATTTTTGTTGGCGTTTCAGTGCATTCCAGCACTCATCCTGCTGTTGTTTATCAAGATGCTTCCGGATAGTCCACGGTTTCTTGCATCTGTCGGTCGTTACGACGAAGCTCAGCAGGTTCTTAACAAGATCCGTTGCCATAGAGCCAGTCAATCAGAGATTGACCTCGAATACAAAGAAATCATTGCGACTGTGCAAGAAGGCAAACCAAGCTCGCCCCTTCAGTTCGCCAAAATATTGATCGGCAAAGGAGGAAGCCCTGGCTCCAATCTGGGTCGACGCGCCTGGCTGTGTATATGGCTCCAGATCATGGCGTCCTGGACTGGTATTACGGCTGTGACGGCATATTCTCCTGTTCTGCTTCGGCAAGCGGGCTACAGCGAGCTGACCCAAAATGGCCTTGCTGGAGGATTAAACACAATTGGTATTCTCGGCACTATAATCAGTACGCAAATTGTAGATCGGATTGGAAGGCGAAAATGTTTGATGCTTGGCTCCATCATCTTGTTCGTTGTCGAGCTTGTGGCGGGATCTGTCTACGAGGCGTCCCTCCATCAGCCGGATAAAGCCAGCCAATTTGCACCTGCTGCTGTTGCGATGCTCTTCCTGTTCAACTTGGGATATGCCGCGACCTGGGGAACCGTCGCTTTCTTGATACCAACCGAGATCTTTCCCTCCGACCTTCGGGCTCAAGGTAACGGCTTTGGCATCACCGGCTGGGCCGTTGGTGTTGGGATGACCACACTGGTGAACCCAATTATGTTTGCAAGTATTGGAAGTCGCAGCTACTTCCTCCTCGCTGGACTAAATCTTTTGTGGGTTCCAACCATTTACCTGTTCTATCCAGAGACCCGCAATCGGACTTTAGAGTCTATTGACTACCTGTTTTCGACTTCGAGCCCATTTTATTGGGATATGGAGAGGGCCTTTCGGCTGTGTATGGATGGGAAGGTGGAGAAGCATGCTAATGAGCTGGCTATAAAGGTCGCGGGCCAGGATGAAGCCCAGCAGGAGTTCCACGAGAACATTCAGAATAGTGTGTAA > 94 An07g01260 unnamed_protein_product;_Function:_contains_domain_common_in_sugar_transport_proteins.;_Similarity:_shows_strong_similarity_to_several_sugar_transport_proteins_(including_hypothetical_and_patented).;_Title:_strong_similarity_to_hypothetical_sugar_transport-like_protein_Stl1_-_Saccharomyces_cerevisiae;_plasma_membrane;_See_PMID_8076821 NA CAK96573.1 NA MGQARKRRSRCRVYLSGTVPIVRSVGEISWLTQRARPLHPPTELEESLLFIVDNIIEVRNLTVADHEKTPGPSALYIDDHNILAQDFLQTMDQPSTFMQGLLSSLYTLGCFFGCVGSISFSEKIGRKNPILIGTILISIGTVIQTVAYSSAQFIVGRIVAGMGTGLNTSVIPVWQAETLPAKKRERFGAIQYVLVCTGTTISYWMAYALSYSANSAFQWRFLVAAQLVFAVLIMCLVPLMPESPRWHFVHGQRDKALCTLMRMHGTSNEQQSEVQAEVHLIQQAMELEARHGATRWVDLFKNEPRTQNFRRLMLGWWLMFMVMWSGVCSIGYYISYLFEVSVGLSHNLSLLLSGFNGLWYLLSAFIPFFVINHLGKRRCMMISAAGMCCCFLTMSLTIRSGTFAASIVCIVAFFLYYTFFALGYLAIPWLYNAEIMPLHLRSQGTALTTSSNWIWNFATVMMTPSLMSQQGWKGYLVFTVFNFCFVPVIYLLYPETTGRRLEEIDAIFYGTSVLVARTEWAEKGRFEANPLGGVIQGLEPSQKETQHHVEYVSSYSENC bitunicate_ascomycetes Aspergillus_niger Aspergillus_niger AM270120 87123..87852 Pel,H.J.,_de_Winde,J.H.,_Archer,D.B.,_Dyer,P.S.,_Hofmann,G.,_Schaap,P.J.,_Turner,G.,_de_Vries,R.P.,_Albang,R.,_Albermann,K.,_Andersen,M.R.,_Bendtsen,J.D.,_Benen,J.A.,_van_den_Berg,M.,_Breestraat,S.,_Caddick,M.X.,_Contreras,R.,_Cornell,M.,_Coutinho,P.M.,_Danchin,E.G.,_Debets,A.J.,_Dekker,P.,_van_Dijck,P.W.,_van_Dijk,A.,_Dijkhuizen,L.,_Driessen,A.J.,_dEnfert,C.,_Geysens,S.,_Goosen,C.,_Groot,G.S.,_de_Groot,P.W.,_Guillemette,T.,_Henrissat,B.,_Herweijer,M.,_van_den_Hombergh,J.P.,_van_den_Hondel,C.A.,_van_der_Heijden,R.T.,_van_der_Kaaij,R.M.,_Klis,F.M.,_Kools,H.J.,_Kubicek,C.P.,_van_Kuyk,P.A.,_Lauber,J.,_Lu,X.,_van_der_Maarel,M.J.,_Meulenberg,R.,_Menke,H.,_Mortimer,M.A.,_Nielsen,J.,_Oliver,S.G.,_Olsthoorn,M.,_Pal,K.,_van_Peij,N.N.,_Ram,A.F.,_Rinas,U.,_Roubos,J.A.,_Sagt,C.M.,_Schmoll,M.,_Sun,J.,_Ussery,D.,_Varga,J.,_Vervecken,W.,_van_de_Vondervoort,P.J.,_Wedler,H.,_Wosten,H.A.,_Zeng,A.P.,_van_Ooyen,A.J.,_Visser,J._and_Stam,H. NA 0:>730 NA NA 17-FEB-2011 Aspergillus_niger_contig_An07c0020,_genomic_contig. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A2QM92_ASPNC.gb Aspergillus 134075639 Nat._Biotechnol._25_(2),_221-231_(2007) fungi AM270120 NA NA green_and_blue_molds sac_fungi 17259976 730 NA genomic_DNA NA CBS_513.88 NA Aspergillus_niger_Tiegh. NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5061 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_the_versatile_cell_factory_Aspergillus_niger_CBS_513.88 NA AM270120.1 CTAACAATTCTCCGAGTATGAGCTGACGTACTCCACGTGGTGTTGAGTTTCCTTCTGCGAAGGTTCTAGCCCCTGGATGACTCCTCCCAGCGGGTTGGCTTCAAACCGGCCTTTTTCGGCCCACTCCGTTCGGGCCACCAAGACCGAAGTCCCGTAGAATATCGCGTCGATCTCCTCGAGCCGCCGGCCAGTCGTTTCCGGATATAGGAGATAGATCACCGGCACAAAGCAGAAGTTAAACACCGTAAATACTAGATACCCCTTCCATCCCTGCTGGCTCATCAGCGAGGGTGTCATCATGACGGTGGCAAAGTTCCAGATCCAATTCGAGGAGGTTGTCAGAGCTGTCCCCTGGGATCGCAGGTGGAGAGGCATGATCTCCGCGTTGTACAACCAGGGTATTGCCAGGTATCCCAGTGCGAAGAAGGTGTAGTACAGGAAGAAGGCGACAATGCAGACAATCGAGGCTGCAAACGTGCCCGACCGGATCGTTAGTGACATTGTCAGGAAACAGCAGCACATGCCGGCAGCGCTAATCATCATACACCGCCGCTTGCCTAGATGATTGATCACAAAAAATGGGATGAATGCTGATAAGAGATACCAGAGACCGTTGAACCCGGAAAGAAGCAGGGACAAGTTATGGCTGAGACCGACGGAGACTTCGAAGAGGTATGAAATGTAATAGCCGATACTGCAGACGCCAGACCACATCACCATGAACATCAGC > 95 An07g01310 unnamed_protein_product;_Function:_high_affinity_glucose_transporter.;_Title:_strong_similarity_to_high_affinity_glucose_transporter_HGT1_-_Kluyveromyces_lactis;_See_PMID_8830679 NA CAK96578.1 NA MATKMSSLPADNAALTRTAQAVAAREVEQQSWLERKLKPTKVRAWYPFKGTPLLYATCGFGSLGDALFGYNSGIMSGLLVNPAFVARFFKDYGGADGSTTGVDPSITGIAVACLQASAAVGALLAGRLGDMMGRKRCVRLGGFIYFFSAFIQIFAPGFGTFIAGRTIQGLGVGFLSMTVPIIQTEIAAPHRRGLMVGIEYTFQIAGYMLSCWVDYGFNFLLPSEMSWQGPFIIQIALSFILLAMSFFLPETPRWLAKNGFMQESLQTVADLHANGDTQAEHVQQVFVEIEEAVIFETNLGKSSWMEMFTRYRKRTIVGVTVQMFAQLNGINIISFYLPSTLATAGFDERKSLLYTAANALPYTAATISTWWLADRWGRKPLLILGGIGMAVLLGIVCAFTEADLDVQVRAKGQYAFVMLYNILYGFTWGPMPWLLPAEIFPLRGRSKGMALATTSNWIFNFIIGMVSPDAFAGINGYFYVVIAGFCLFSAGLVHFYYVETANSTLEEVAELFGDTAFADADGEAREASDKYVYAYGAEPGYIAPFTSASLSANNDDDEYETLFAIALFSDILIPLAAPRLER bitunicate_ascomycetes Aspergillus_niger Aspergillus_niger AM270120 97444..97660 Pel,H.J.,_de_Winde,J.H.,_Archer,D.B.,_Dyer,P.S.,_Hofmann,G.,_Schaap,P.J.,_Turner,G.,_de_Vries,R.P.,_Albang,R.,_Albermann,K.,_Andersen,M.R.,_Bendtsen,J.D.,_Benen,J.A.,_van_den_Berg,M.,_Breestraat,S.,_Caddick,M.X.,_Contreras,R.,_Cornell,M.,_Coutinho,P.M.,_Danchin,E.G.,_Debets,A.J.,_Dekker,P.,_van_Dijck,P.W.,_van_Dijk,A.,_Dijkhuizen,L.,_Driessen,A.J.,_dEnfert,C.,_Geysens,S.,_Goosen,C.,_Groot,G.S.,_de_Groot,P.W.,_Guillemette,T.,_Henrissat,B.,_Herweijer,M.,_van_den_Hombergh,J.P.,_van_den_Hondel,C.A.,_van_der_Heijden,R.T.,_van_der_Kaaij,R.M.,_Klis,F.M.,_Kools,H.J.,_Kubicek,C.P.,_van_Kuyk,P.A.,_Lauber,J.,_Lu,X.,_van_der_Maarel,M.J.,_Meulenberg,R.,_Menke,H.,_Mortimer,M.A.,_Nielsen,J.,_Oliver,S.G.,_Olsthoorn,M.,_Pal,K.,_van_Peij,N.N.,_Ram,A.F.,_Rinas,U.,_Roubos,J.A.,_Sagt,C.M.,_Schmoll,M.,_Sun,J.,_Ussery,D.,_Varga,J.,_Vervecken,W.,_van_de_Vondervoort,P.J.,_Wedler,H.,_Wosten,H.A.,_Zeng,A.P.,_van_Ooyen,A.J.,_Visser,J._and_Stam,H. NA 0:217 NA NA 17-FEB-2011 Aspergillus_niger_contig_An07c0020,_genomic_contig. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A2QM97_ASPNC.gb Aspergillus 134075639 Nat._Biotechnol._25_(2),_221-231_(2007) fungi AM270120 NA NA green_and_blue_molds sac_fungi 17259976 217 NA genomic_DNA NA CBS_513.88 NA Aspergillus_niger_Tiegh. NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5061 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_the_versatile_cell_factory_Aspergillus_niger_CBS_513.88 NA AM270120.1 ATGGCTACCAAAATGTCCTCTCTACCGGCGGATAATGCCGCTTTGACTCGCACTGCACAGGCCGTGGCTGCTCGGGAAGTAGAGCAGCAGAGCTGGCTGGAGAGAAAGCTGAAGCCGACGAAGGTGAGAGCTTGGTATCCCTTCAAGGGAACCCCATTGCTCTACGCGACATGTGGTTTCGGCAGTCTGGGTGATGCCCTGTTTGGGTACAACTCTG > 96 An08g04670 unnamed_protein_product;_Title:_strong_similarity_to_hypothetical_sugar_transporter_encoded_by_DRA0271_-_Deinococcus_radiodurans NA CAK45440.1 NA MGDLRPPKEPAIQYFPSQDLPLLLTRESGFINKAIQDIGMGRYQWELYILCGFGWTADNLTQGVALTLTPLSMEFGISESYVRFTTCALFVGLIVGATFWGLASDMIGRRLAFNTTLFLCGAFGLASGGGPSWVGTCALYACLGLGVGGNLPVDAAIFLEFLPGASGNILSSLATFWSVGTFIASMLAWAFIPNYSCSDSSNCTKENNMGWRYLVLSLGAITMVFWMCRFFFFKLYESPKFLVSKGRDEDAVAAIHGVAHHNKKKTWLTVEILQEIGGAAEDSKEQNLTSAQILKRSLSKFSVQQIGPLFSSKRLGITTALIWLCWTTIGMGYTLFNAFLPQYLGSSSSVYVTYRNYAITSVTGLFGPILALYMVDIKYVGRKGTMALSTLVTAVLLFCFTAAKTSDTQLVCSALESFTQMIMYGVLYAYTPEVFPAPNRGTGSGIASCLNRIAGFCAPIIGIYASANPSAPIYASGALLLVSFVAMILLPIETAGKQSL bitunicate_ascomycetes Aspergillus_niger Aspergillus_niger AM270168 54714..55261 Pel,H.J.,_de_Winde,J.H.,_Archer,D.B.,_Dyer,P.S.,_Hofmann,G.,_Schaap,P.J.,_Turner,G.,_de_Vries,R.P.,_Albang,R.,_Albermann,K.,_Andersen,M.R.,_Bendtsen,J.D.,_Benen,J.A.,_van_den_Berg,M.,_Breestraat,S.,_Caddick,M.X.,_Contreras,R.,_Cornell,M.,_Coutinho,P.M.,_Danchin,E.G.,_Debets,A.J.,_Dekker,P.,_van_Dijck,P.W.,_van_Dijk,A.,_Dijkhuizen,L.,_Driessen,A.J.,_dEnfert,C.,_Geysens,S.,_Goosen,C.,_Groot,G.S.,_de_Groot,P.W.,_Guillemette,T.,_Henrissat,B.,_Herweijer,M.,_van_den_Hombergh,J.P.,_van_den_Hondel,C.A.,_van_der_Heijden,R.T.,_van_der_Kaaij,R.M.,_Klis,F.M.,_Kools,H.J.,_Kubicek,C.P.,_van_Kuyk,P.A.,_Lauber,J.,_Lu,X.,_van_der_Maarel,M.J.,_Meulenberg,R.,_Menke,H.,_Mortimer,M.A.,_Nielsen,J.,_Oliver,S.G.,_Olsthoorn,M.,_Pal,K.,_van_Peij,N.N.,_Ram,A.F.,_Rinas,U.,_Roubos,J.A.,_Sagt,C.M.,_Schmoll,M.,_Sun,J.,_Ussery,D.,_Varga,J.,_Vervecken,W.,_van_de_Vondervoort,P.J.,_Wedler,H.,_Wosten,H.A.,_Zeng,A.P.,_van_Ooyen,A.J.,_Visser,J._and_Stam,H. NA 0:>548 NA NA 17-FEB-2011 Aspergillus_niger_contig_An08c0130,_genomic_contig. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A2QR39_ASPNC.gb Aspergillus 134077075 Nat._Biotechnol._25_(2),_221-231_(2007) fungi AM270168 NA NA green_and_blue_molds sac_fungi 17259976 548 NA genomic_DNA NA CBS_513.88 NA Aspergillus_niger_Tiegh. NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5061 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_the_versatile_cell_factory_Aspergillus_niger_CBS_513.88 NA AM270168.1 CTACAAACTCTGCTTACCCGCAGTCTCAATGGGCAGCAGGATCATCGCCACAAACGAAACCAGCAACAACGCACCGGAAGCATAGATAGGCGCACTGGGGTTCGCGGAAGCGTAGATACCGATGATAGGGGCACAGAATCCAGCAATGCGGTTCAGGCAACTGGCGATACCAGAGCCGGTACCACGGTTGGGAGCGGGGAAGACCTCAGGAGTGTAGGCGTACAGGACACCGTACATGATCATCTGGGTAAAGGATTCGAGAGCAGAGCAGACGAGTTGAGTGTCGGATGTCTTGGCTGCAGTGAAGCAGAAGAGCAGGACGGCAGTGACCAACGTCGACAGGGCCATTGTACCCTTGCGACCGACGTACTTAATGTCGACCATGTAGAGGGCGAGAATGGGGCCGAAGAGACCGGTCACGGAGGTGATGGCGTAGTTACGGTAGGTAACATATACGGAAGACGAAGAGCCGAGATACTGGGGCAGGAAGGCGTTGAAGAGGGTGTATCCCATGCCGATGGTGGTCCAGCAGAGCCAGATGAGGGCGG > 97 ANI_1_584084 NA MFS_sugar_transporter XP_001393794.1 NA MGTFGSQTSTYNRLVTIFVAVGSMTYGYCSSIISSTIGQPGWFTYFNLPQEGEPGYASITTPAISTANGVFSAGGAVGTLFIMWSCDYFGRKFNIQLGAFFSMFGGALQGGSNSLKMFQAGRFVCGLGIGILVTVCPMYLSEMSSAFRRGWLVGHHAIFLVFGYMLAGWVGYACYFAENKIGTFGWRFPLCLQCLPPLILLLGSPWLPRSPRWLISKGKHEEARLVLERLRKSPDDPNNLVAKEEYFQTAEQIRLEGERLSAYGNVWNAVLKKKSYRKRMAIGFLTQWGAEFGGPLIINNYAVLLYTNLGETGGMPLLLSAVWLTTAGVIYNPLGAWLHDKVNSRRKMYITGFVGIIVTTSCLAAMTAQYAGTTNRVGNGFGILFMYLYLAFQGTFCDTTMYLYVSEIFPTEIRPIGMGFSLFGQFAATLILLQTAPMGFDNVGWKYYLVIICWSAFFIPVIYFFFPETARLTLEEIAKNFGEEVAVHLTDATDEEKARLERDLEKRPDSVPHSGSSKDNEAQVV bitunicate_ascomycetes Aspergillus_niger_CBS_513.88 Aspergillus_niger_CBS_513.88 XM_001393757 226..1803 NA NA 0:1578 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_166525).On_Jan_6,_2011_this_sequence_version_replaced_gi:145242355.Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_niger_CBS_513.88_MFS_sugar_transporter,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A2QU92_ASPNC.gb Aspergillus 317031552 NA fungi XM_001393757 NA NA green_and_blue_molds sac_fungi NA 1578 NA mRNA NA NA NA Aspergillus_niger_Tiegh. NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 425011 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus NA NA XM_001393757.2 ATGGGGACGTTCGGGTCTCAAACCAGTACCTATAATAGGCTGGTCACTATATTTGTTGCCGTTGGTTCGATGACGTACGGTTACTGCTCCTCCATTATCTCAAGCACTATCGGTCAGCCGGGATGGTTCACATACTTCAATCTGCCTCAGGAGGGCGAGCCGGGATATGCCTCGATAACAACTCCTGCTATATCTACCGCGAACGGCGTCTTCAGTGCTGGAGGTGCGGTTGGGACGCTCTTCATAATGTGGTCGTGTGATTATTTTGGTCGGAAATTTAATATCCAGTTGGGGGCTTTCTTCTCAATGTTTGGAGGAGCACTTCAAGGAGGTTCTAACTCACTCAAAATGTTTCAAGCTGGGCGATTTGTCTGCGGCCTCGGAATTGGTATCCTCGTGACTGTTTGTCCAATGTACCTTTCCGAAATGTCTAGTGCCTTTCGTCGCGGTTGGCTTGTTGGCCATCATGCTATCTTTTTGGTCTTCGGCTACATGCTTGCCGGCTGGGTAGGCTATGCCTGCTACTTTGCTGAAAATAAGATTGGCACATTTGGCTGGCGGTTCCCACTTTGTCTACAGTGCTTGCCACCTCTTATCCTGCTGCTAGGTTCGCCTTGGCTTCCTCGCTCTCCACGCTGGCTGATCAGTAAGGGCAAGCATGAGGAAGCTAGATTGGTTCTTGAGCGACTTCGCAAGTCCCCAGATGACCCTAACAATCTGGTTGCTAAAGAAGAATATTTCCAAACTGCCGAGCAAATTCGTCTTGAGGGGGAGCGATTGTCTGCCTACGGCAATGTGTGGAACGCAGTACTGAAGAAGAAGTCGTATAGGAAGCGCATGGCTATCGGCTTTCTGACCCAATGGGGAGCTGAATTTGGCGGACCTCTGATCATTAACAACTATGCCGTTCTTCTATACACCAACCTAGGGGAAACGGGCGGTATGCCCCTGCTCCTGAGTGCGGTCTGGCTGACAACTGCTGGTGTCATTTACAACCCTCTTGGTGCCTGGCTTCACGATAAGGTCAACTCGCGTCGAAAAATGTACATCACAGGCTTTGTCGGAATCATTGTTACCACTTCTTGCTTGGCTGCCATGACCGCACAATACGCGGGCACCACAAACCGGGTTGGTAATGGATTTGGCATTCTGTTCATGTACCTTTACCTTGCATTCCAAGGAACATTCTGTGATACGACGATGTATCTCTACGTGTCTGAGATTTTCCCTACTGAGATTCGCCCAATTGGCATGGGCTTTTCCTTGTTTGGACAGTTCGCCGCGACTCTTATCCTACTTCAAACCGCGCCAATGGGTTTCGACAACGTTGGCTGGAAGTATTATCTGGTTATCATTTGCTGGTCCGCATTTTTCATTCCAGTGATCTACTTCTTCTTCCCGGAGACTGCTCGATTGACATTGGAGGAAATTGCGAAGAACTTTGGCGAGGAAGTTGCGGTCCATCTAACTGACGCAACGGACGAGGAGAAAGCCCGCCTCGAACGTGACCTCGAGAAACGGCCCGATAGTGTGCCGCACTCCGGCTCAAGTAAGGACAACGAGGCTCAAGTTGTATAG > 98 ANI_1_1748094 NA MFS_phospholipid_transporter_(Git1) XP_001394261.1 NA MEPKPDVESKVDVPPEKAPASLDAIPLEETAVGKSRWERSWPTIACGAGLFSDGYLNGIIGPVNTILKRLYPDEYANSPASQNVSSITFAGTVVGMLIFGYTSDHWSRKWSLMISTIILFLFAALCAGSYGYHNSHYGLFAALTAYRFFLGIGIGGEYPAGSVAAAENTGELKQGHRNRWFVMFTNFQIDFAYVVSALVSMILVLIFTENHLRAVWRIGLGLGVIPPLSLIYLRLKLEEPEEFNRERMHKFPLWLIIKFYWKRLFICSLIWFLYDFSSYSFSIYSSDWIAIILGDSAPLWKSFGWTTLTYSFYIPGSFLGALASDWLGPRNTLALGVLLQGIVGFIMSGCYEYLSTPKNVAAFVVVFGIFSSLGEFGPGDNIGLCCAKSSATAVRGQFYAIAAAAGKIGAFVGTYVIPIIQDNAPNKVRSGQDPFFVSSSLCIFSAALAFFLLPNIGQDTITYEDAKFRAYLEAHGYDTSAMGNREER bitunicate_ascomycetes Aspergillus_niger_CBS_513.88 Aspergillus_niger_CBS_513.88 XM_001394224 1..1467 NA NA 0:1467 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_166526).On_Jan_6,_2011_this_sequence_version_replaced_gi:145243469.Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 02-FEB-2011 Aspergillus_niger_CBS_513.88_MFS_phospholipid_transporter_(Git1)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A2QVT7_ASPNC.gb Aspergillus 317032711 NA fungi XM_001394224 NA NA green_and_blue_molds sac_fungi NA 1467 NA mRNA NA NA NA Aspergillus_niger_Tiegh. NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 425011 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus NA NA XM_001394224.2 ATGGAACCAAAACCGGACGTTGAGTCCAAGGTCGATGTTCCTCCGGAAAAGGCCCCCGCTTCTCTCGACGCAATTCCTTTGGAGGAAACTGCGGTAGGCAAGAGCCGTTGGGAGCGCAGTTGGCCCACAATTGCTTGCGGCGCTGGTCTCTTCTCTGATGGCTACCTCAATGGGATCATTGGACCTGTAAATACGATCCTGAAGAGGCTCTACCCTGATGAATACGCCAACTCGCCCGCCAGCCAGAATGTATCTTCGATTACTTTCGCAGGTACTGTGGTCGGTATGCTTATCTTTGGATACACAAGTGACCACTGGTCGAGAAAATGGTCTTTAATGATCTCTACGATCATTTTGTTCCTCTTTGCCGCTTTGTGTGCTGGATCCTATGGATACCATAACAGCCATTATGGCTTATTTGCTGCCCTTACCGCATACCGTTTCTTCCTAGGAATTGGAATTGGCGGCGAGTACCCTGCAGGGTCTGTCGCAGCCGCGGAGAACACTGGTGAACTCAAGCAAGGCCATCGCAACCGATGGTTCGTGATGTTCACCAATTTCCAGATCGATTTTGCCTATGTTGTCTCCGCCTTGGTTTCGATGATTTTGGTTTTGATCTTCACCGAAAACCATCTGCGTGCGGTCTGGCGTATCGGATTGGGTCTTGGTGTCATTCCACCTCTTAGTCTGATCTATCTCCGGTTGAAGTTGGAGGAGCCCGAGGAGTTTAACCGCGAGCGCATGCACAAGTTCCCTCTTTGGTTGATTATCAAGTTCTATTGGAAGCGTCTGTTTATATGCTCATTGATCTGGTTCCTCTATGACTTTTCTTCTTATTCCTTCAGCATCTACTCGTCTGACTGGATCGCAATCATCTTGGGGGACAGTGCTCCACTCTGGAAGAGCTTCGGTTGGACTACACTGACATATTCCTTCTACATCCCCGGATCTTTTCTAGGAGCATTGGCGAGTGATTGGTTGGGGCCCCGCAATACCCTGGCCCTCGGTGTCTTGCTGCAAGGCATTGTTGGTTTTATCATGTCCGGCTGCTATGAGTATCTCTCAACGCCCAAGAATGTCGCAGCATTCGTCGTGGTTTTCGGCATTTTCTCGAGTCTTGGTGAGTTTGGCCCGGGCGACAACATTGGATTGTGCTGTGCCAAGAGCAGTGCAACCGCTGTACGGGGCCAGTTCTACGCCATCGCTGCTGCTGCTGGAAAGATAGGCGCGTTTGTTGGGACATATGTGATCCCGATCATTCAAGACAACGCGCCTAACAAGGTCCGGTCCGGCCAGGACCCCTTCTTCGTCTCCAGTTCACTCTGCATTTTTAGTGCTGCTTTGGCCTTTTTCCTCCTGCCAAACATCGGACAGGACACCATCACTTATGAGGACGCCAAATTCCGGGCCTATCTTGAGGCCCATGGTTACGATACTTCTGCCATGGGCAACCGAGAGGAGCGGTAA > 99 An12g05750 unnamed_protein_product;_Function:_PHO84_is_a_high-affinity_inorganic_phosphate/H+_symporter.;_Induction:_PHO84_transcription_is_regulated_by_Pi.;_Phenotype:_disruption_of_PHO84_is_not_lethal.;_Title:_strong_similarity_to_high-affinity_inorganic_phosphate/H+_symporter_Pho84_-_Saccharomyces_cerevisiae;_plasma_membrane;_See_PMID_10518922;_See_PMID_2038328 NA CAK46283.1 NA MADFGPRAPHGPDMNGKQDFAEMHPNEKEGFDRLLRPDDSYTAEGVYWADLPIGQRVKFVTSVDNKERSRQWSALWAEIKQDPLSPMMNYFRNTIIPGADLSQLRPPVHRKHLHPLPHSFSACWDKYELCNKQWINAITYLEIVGIIIGQVLVGVIGDWVGRRWGLLQDAWIMFLGLVMLTCAWGVTQNGWVICYAWSLFIYGIGVGGEYPMTATSGMENAVGSGKLSTREDRLHRGSKVVGVFSMQGWGQVLNQAILMILLLIFNAGSGEEPISETNTQWTYRISFVIPMVGTFWLIYYRAYHMKAASKQLAATKKKNSVTGYDTESLRLTFKYFTPRVMATAGGWFANDVFFYGAKLFSSDFIKVISPNTKSIFVTWQWSFINCVVTLMGYYAAIMFVDNKLYGRKWMQIMGFLLCFIVYVVPAFHYHYYTEAAHIHSFQAMYFLGSFFNQFGPNCITFLVAGEVFPTPIRATAHGISAACGKLGALLAAILFNYIDTQTKFYFVPWWGIFGMFLTFFFLPDTTGLDLKEQERRWRFIREGREHEYHGVAIHPKHLSLWERFRGVGKYYDPELDYQQRVEEYRTEWEAIMARRSEETKNGDDVDLAFVEDDILEGSVHNYFHRTSSFTKSQSVEKVTEAEPSE bitunicate_ascomycetes Aspergillus_niger Aspergillus_niger AM270272 193281..194599 Pel,H.J.,_de_Winde,J.H.,_Archer,D.B.,_Dyer,P.S.,_Hofmann,G.,_Schaap,P.J.,_Turner,G.,_de_Vries,R.P.,_Albang,R.,_Albermann,K.,_Andersen,M.R.,_Bendtsen,J.D.,_Benen,J.A.,_van_den_Berg,M.,_Breestraat,S.,_Caddick,M.X.,_Contreras,R.,_Cornell,M.,_Coutinho,P.M.,_Danchin,E.G.,_Debets,A.J.,_Dekker,P.,_van_Dijck,P.W.,_van_Dijk,A.,_Dijkhuizen,L.,_Driessen,A.J.,_dEnfert,C.,_Geysens,S.,_Goosen,C.,_Groot,G.S.,_de_Groot,P.W.,_Guillemette,T.,_Henrissat,B.,_Herweijer,M.,_van_den_Hombergh,J.P.,_van_den_Hondel,C.A.,_van_der_Heijden,R.T.,_van_der_Kaaij,R.M.,_Klis,F.M.,_Kools,H.J.,_Kubicek,C.P.,_van_Kuyk,P.A.,_Lauber,J.,_Lu,X.,_van_der_Maarel,M.J.,_Meulenberg,R.,_Menke,H.,_Mortimer,M.A.,_Nielsen,J.,_Oliver,S.G.,_Olsthoorn,M.,_Pal,K.,_van_Peij,N.N.,_Ram,A.F.,_Rinas,U.,_Roubos,J.A.,_Sagt,C.M.,_Schmoll,M.,_Sun,J.,_Ussery,D.,_Varga,J.,_Vervecken,W.,_van_de_Vondervoort,P.J.,_Wedler,H.,_Wosten,H.A.,_Zeng,A.P.,_van_Ooyen,A.J.,_Visser,J._and_Stam,H. NA 0:>1319 NA NA 17-FEB-2011 Aspergillus_niger_contig_An12c0160,_genomic_contig. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A2QZQ1_ASPNC.gb Aspergillus 134080284 Nat._Biotechnol._25_(2),_221-231_(2007) fungi AM270272 NA NA green_and_blue_molds sac_fungi 17259976 1319 NA genomic_DNA NA CBS_513.88 NA Aspergillus_niger_Tiegh. NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5061 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_the_versatile_cell_factory_Aspergillus_niger_CBS_513.88 NA AM270272.1 TTACTCCGAGGGCTCAGCCTCAGTGACCTTCTCCACGCTCTGGCTCTTGGTGAACGAGCTGGTGCGGTGGAAGTAGTTGTGGACGGAACCCTCCAAGATGTCATCCTCGACGAAGGCCAAATCGACATCGTCGCCGTTCTTGGTCTCTTCGCTGCGGCGAGCCATGATGGCCTCCCACTCAGTGCGGTACTCCTCAACGCGCTGCTGGTAGTCCAGCTCGGGGTCGTAGTACTTGCCGACGCCACGGAAGCGCTCCCACAAGGACAGGTGCTTGGGGTGAATAGCAACACCGTGGTACTCGTGCTCACGACCCTCGCGGATGAATCTCCAGCGGCGCTCCTGCTCCTTGAGATCCAGACCGGTGGTATCCGGAAGGAAGAAGAAGGTCAGGAACATGCCGAAGATACCCCACCAGGGCACAAAGTAGAACTTGGTCTGAGTGTCGATGTAGTTGAAGAGGATAGCAGCCAACAGAGCTCCCAGCTTACCGCAGGCAGCAGAGATACCGTGGGCGGTGGCACGGATAGGGGTGGGGAAGACTTCACCAGCGACCAGGAAGGTGATGCAGTTGGGACCGAATTGGTTGAAGAAACTGCCCAGGAAGTACATGGCCTGGAAGGAGTGGATGTGGGCGGCTTCGGTGTAGTAGTGGTAGTGGAAGGCAGGCACCACGTACACGATGAAGCAGAGCAAGAAGCCCATGATTTGCATCCACTTGCGGCCGTAGAGCTTGTTGTCCACGAACATAATGGCAGCATAGTAGCCCATCAGGGTGACAACGCAGTTGATGAAACTCCACTGCCAGGTAACGAAGATAGACTTGGTGTTGGGGCTGATGACCTTGATAAAGTCACTGGAGAAGAGCTTGGCACCGTAGAAGAAAACGTCGTTGGCGAACCATCCACCAGCAGTGGCCATAACACGAGGAGTAAAGTACTTGAAAGTGAGGCGGAGAGACTCGGTGTCGTAACCAGTGACCGAGTTCTTCTTCTTGGTGGCTGCCAGCTGCTTACTGGCGGCCTTCATGTGGTATGCACGGTAGTAGATCAGCCAGAAAGTACCAACCATGGGGATGACGAAGGAGATACGGTAGGTCCATTGGGTGTTGGTCTCGCTGATCGGCTCCTCTCCGCTACCAGCGTTGAAGATAAGAAGCAAGATCATGAGGATGGCCTGGTTAAGGACTTGTCCCCAACCCTGCATGGAGAAGACACCAACAACCTTGGAACCACGGTGAAGACGATCCTCGCGAGTAGAGAGCTTGCCGGAACCAACAGCGTTCTCCATACCGCTGGTGGCCGTCATCGGGTACTCACCAC > 100 ANI_1_390124 NA MFS_myo-inositol_transporter XP_001400896.1 NA MGDKKRDPENPISMVHHLESPTSNEKQDPEVARNWTRELTESKDATTSTKLKNPLAGLTRDELFRDVESFARDKGLEHIMDELKRGSLVAQDPKAFESLEELSESDKELLRREKTHRWSQPFMMYFMTILCAGSAIVQGMDQTAVNGAQEFYFAEFNLTNTWQQGLLNGAPYLCSALIGCWTTAPLNRWFGRRGCIFISCLISFASSFWMAAAHTWWNLLLGRFLLGFAVGAKSTTTPVYGAECSPAIIRGALVMMWQMWTAFGIMLGYIASVAFMDVTHPSIPGFNWRLMLGSTAIPPFFVCMQVYFCPESPRWYMMRNRYQDAYKALCKLRPSSFQASRDLYYIHAALQVEEKLREGKHLWREMFTVPRNRRAAQSSFFVMFMQQFCGVNAIMYYSSSMFADAGFDRRMALVTSLGCGITNWIFALPAVYTIDTFGRRNLLLTTFPLMSLFLLFTGFSFYIPDQTSRTACVATGIYLFMVVYSPGEGPVPFTYSAEAFPLYIRDVGMSFATATTWGFNFIVSLTWLPLRDAFSPQGAFGWYAAWNVFGWIFCYFCLPETKALSLEELDQVFSIPTRKHVNHYVGMLPWYVKKYILRGDVPPQKQLYDYE bitunicate_ascomycetes Aspergillus_niger_CBS_513.88 Aspergillus_niger_CBS_513.88 XM_001400859 NA NA NA 0:1836 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_166529).Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_niger_CBS_513.88_MFS_myo-inositol_transporter,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A2R316_ASPNC.gb Aspergillus 145249113 NA fungi XM_001400859 NA NA green_and_blue_molds sac_fungi NA 1836 NA mRNA NA NA NA Aspergillus_niger_Tiegh. NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 425011 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus NA NA XM_001400859.1 ATGGGTGACAAGAAAAGAGACCCAGAGAACCCCATCTCTATGGTTCACCATCTTGAATCACCCACCTCCAATGAAAAGCAAGATCCAGAGGTGGCCCGAAACTGGACACGCGAGTTAACCGAGAGCAAGGATGCCACCACATCCACAAAATTGAAGAACCCGCTCGCTGGCCTGACGCGAGATGAGCTATTTCGTGATGTCGAGTCATTTGCAAGGGACAAGGGTTTGGAGCATATCATGGATGAGCTGAAAAGAGGCTCTCTTGTAGCGCAGGATCCTAAAGCCTTCGAGTCCCTTGAAGAATTATCCGAAAGTGATAAAGAACTGCTTCGTCGTGAGAAGACACATCGATGGAGCCAGCCGTTCATGATGTACTTCATGACAATTCTCTGTGCTGGGTCCGCAATCGTCCAGGGCATGGACCAGACGGCAGTGAATGGAGCACAAGAGTTTTACTTCGCTGAGTTTAATCTCACCAATACCTGGCAGCAAGGGCTCCTGAACGGAGCTCCATACTTATGTTCTGCGCTTATAGGATGCTGGACAACCGCCCCTCTAAACCGTTGGTTTGGTCGTCGTGGATGCATCTTCATCTCATGCTTGATCTCCTTTGCCTCGTCATTTTGGATGGCTGCAGCACACACTTGGTGGAACCTACTCTTAGGACGGTTCCTCCTCGGTTTTGCAGTAGGTGCCAAGTCAACAACGACTCCAGTATACGGAGCGGAGTGCTCTCCAGCTATAATTCGTGGGGCTCTGGTTATGATGTGGCAAATGTGGACGGCTTTCGGGATCATGCTTGGATATATTGCTTCCGTTGCCTTCATGGATGTGACGCACCCCTCAATCCCCGGTTTCAATTGGAGATTGATGCTTGGTTCAACCGCCATTCCTCCCTTCTTCGTATGCATGCAGGTGTATTTCTGTCCCGAGTCACCTAGATGGTATATGATGAGGAATCGCTATCAAGACGCTTACAAAGCACTTTGTAAGCTCCGTCCTTCTTCGTTTCAGGCTTCCCGCGACCTCTACTATATCCACGCAGCATTGCAGGTGGAGGAAAAGCTCCGGGAAGGCAAACACCTCTGGCGCGAAATGTTCACCGTCCCACGCAATCGACGCGCCGCGCAATCCTCGTTTTTTGTCATGTTTATGCAGCAATTCTGCGGAGTCAACGCTATCATGTATTATTCGAGTTCAATGTTCGCGGATGCGGGTTTTGATAGGCGAATGGCGTTGGTGACGTCATTGGGATGTGGTATAACGAACTGGATATTCGCTCTCCCGGCAGTATACACGATAGACACATTCGGAAGGCGGAATCTCCTCCTCACCACATTTCCACTGATGAGCTTGTTTCTGCTCTTTACCGGGTTTTCATTCTATATCCCGGACCAGACATCGAGGACCGCTTGCGTGGCGACAGGCATCTATCTCTTCATGGTGGTGTATTCCCCAGGTGAGGGACCAGTGCCTTTCACGTACTCTGCTGAAGCATTTCCACTCTATATCCGTGATGTAGGCATGTCCTTTGCGACTGCGACGACCTGGGGTTTCAACTTTATTGTCTCACTGACGTGGCTTCCATTGCGGGACGCCTTCAGCCCACAAGGAGCCTTTGGTTGGTATGCAGCGTGGAACGTCTTCGGATGGATCTTTTGCTACTTCTGTCTACCTGAGACCAAGGCGCTATCACTTGAGGAACTGGACCAGGTCTTTTCGATTCCGACAAGAAAGCACGTCAATCACTATGTGGGAATGCTGCCGTGGTATGTGAAGAAGTATATCTTGCGAGGAGACGTGCCGCCTCAGAAGCAGTTGTACGATTATGAGTAG > 101 ANI_1_1256124 NA hexose_carrier_protein XP_001400900.1 NA MSSVPTFAGLSGRKLIWSVTSCATLGFLLFGYDQGVMSSIIDADPFNDIFTATRDNSTIQGVVTAIYELGCLGGALFILACGDWLGRRYSIMLGATIMIIGVIIQVTSISGHVPLAQFCVGRVITGVGNGMNTSTIPTYQAECSRTSNRGLLICIEGSTIAIGTLISYWVDFGASYGPPDLTWRFPIAFQIFFGLLIILGLLVLPESPRWLFTQERYEEGERVIAALQGKEISHHEVQLQKTIILDSLRASGMATKSTPLSAVFTGGKTQHCRRMLLGCSSQFFQQIGGCNAVIYYLPVLMQQSLHQTEFMAMILGGVNMIVYSIFACSSWFLIQKVGRRNLFLVGSFGQSASMVITFACLIPGGPEAAKGAAVGLFTFIATFGATWLPLPWLYPAEISPIKTRTKANAISTCTNWLFNFLIVMVTPIMIRNIGWGTYLFFAVINALFIPVIYFFYPETKDRSLEEIDLIFAKGYIEKMTYVRAAKELPHLSDEEVEQVAIQYGFGPADQPASGDSESTETGAGRTEVEVEKRSE bitunicate_ascomycetes Aspergillus_niger_CBS_513.88 Aspergillus_niger_CBS_513.88 XM_001400863 NA NA NA 0:1608 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_166529).Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_niger_CBS_513.88_hexose_carrier_protein,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A2R320_ASPNC.gb Aspergillus 145249121 NA fungi XM_001400863 NA NA green_and_blue_molds sac_fungi NA 1608 NA mRNA NA NA NA Aspergillus_niger_Tiegh. NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 425011 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus NA NA XM_001400863.1 ATGTCTTCGGTGCCCACTTTCGCCGGCTTGTCCGGTCGGAAGCTGATCTGGTCTGTGACTTCCTGTGCGACCTTGGGTTTCTTGCTCTTTGGTTACGATCAGGGTGTGATGAGCAGTATTATTGACGCCGATCCCTTCAATGACATCTTCACGGCTACGAGAGATAACTCCACCATTCAGGGTGTGGTCACTGCTATCTATGAGCTGGGATGTCTCGGCGGTGCGCTCTTCATCCTCGCCTGCGGTGACTGGCTCGGCCGCAGATACTCCATCATGCTGGGTGCCACCATTATGATCATCGGTGTTATCATCCAGGTTACGTCTATCTCGGGACACGTTCCCCTGGCCCAATTCTGTGTCGGACGTGTTATTACCGGTGTCGGAAACGGCATGAACACGTCTACTATCCCCACATACCAGGCTGAATGTTCGAGGACTTCCAATCGTGGTCTACTCATCTGTATCGAGGGTAGTACCATTGCTATTGGAACCCTGATCTCCTACTGGGTGGATTTCGGTGCCTCCTACGGTCCCCCCGACCTCACTTGGCGTTTCCCCATCGCTTTCCAGATCTTCTTCGGTCTTCTTATCATCCTTGGTCTCTTGGTGCTGCCCGAGTCTCCCAGATGGCTGTTTACCCAGGAGCGCTACGAGGAGGGTGAGCGGGTCATTGCCGCCTTGCAGGGCAAGGAGATCAGCCACCACGAAGTCCAGCTGCAGAAGACCATCATTCTGGACTCCCTCAGAGCTTCCGGCATGGCCACCAAGTCCACCCCCCTCTCCGCCGTCTTCACCGGCGGCAAGACCCAGCACTGCCGTCGCATGCTTTTGGGCTGCTCGTCTCAATTCTTCCAGCAAATCGGTGGCTGCAACGCTGTCATCTACTACCTGCCCGTTCTGATGCAGCAATCCCTCCACCAAACAGAATTCATGGCTATGATTCTCGGTGGTGTCAACATGATCGTCTACTCGATCTTCGCCTGCTCGTCCTGGTTCCTGATCCAAAAGGTCGGCCGTCGCAACCTCTTCCTTGTCGGCTCCTTCGGCCAAAGTGCGTCCATGGTGATCACCTTCGCCTGCTTGATCCCCGGCGGTCCCGAAGCCGCCAAGGGTGCCGCTGTAGGCCTGTTCACCTTCATTGCCACCTTCGGCGCAACCTGGCTCCCGCTGCCCTGGCTCTACCCGGCCGAGATTTCCCCAATCAAGACTCGTACCAAGGCGAACGCCATCTCCACCTGCACCAACTGGCTCTTCAACTTCCTCATTGTCATGGTCACCCCCATTATGATTCGCAACATCGGATGGGGCACGTACCTCTTCTTCGCGGTCATCAATGCCCTCTTCATTCCCGTCATTTACTTCTTCTACCCCGAGACAAAAGATCGATCCCTCGAGGAGATTGATTTGATTTTCGCCAAGGGTTACATCGAGAAGATGACCTACGTGCGTGCGGCCAAGGAGCTGCCGCACTTGTCGGACGAAGAGGTCGAGCAGGTTGCTATTCAGTATGGTTTTGGTCCTGCTGATCAGCCGGCTAGTGGCGATAGTGAGAGTACGGAGACTGGTGCGGGTAGGACGGAGGTTGAGGTGGAGAAGCGCAGCGAGTAA > 102 An16g06610 unnamed_protein_product;_Function:_in_K._lactis_disruption_of_hgt1_confered_much-reduced_uptake_of_glucose_at_low_concentrations_and_growth_was_particularly_affected_in_low-glucose_medium.;_Regulation:_in_K._lactis_expression_of_HGT1_is_constitutive.;_Title:_strong_similarity_to_high-affinity_glucose_transporter_HGT1_-_Kluyveromyces_lactis;_plasma_membrane;_See_PMID_8830679 NA CAK46995.1 NA MGLAQSGEPGYSRTTRYLGAFNGNLFQVPALSTGWLKNRPGLNAAGAAVGTITNAFIADLLSRKRTISIGAILQIIGAALCAGAVNVSMFMAGRFISGWGIGILISVIPMYQSEISTPEARGFMVSIHGIMIAIGYTLSGWIGFGVYFITASGSTSTFPWRFPLAFQIAPVLLLLVGSPWVPYSPRWLLMKGRKEEALEVMKRLHAKKGETENTDALREYHQLVRQVDLDREVVDKRCWYEVVRTPANRRRALIASLLMWGDMFMGSLVIANYGVILFGELGLSGYMPLLCLGIYVTITIPGNTITALYLDRLGRRTFLLIGTGGIGLCLVLETLMQGLYMDSTNDAGKRAAIFFIFLYIFFWSTCMDATQFVYLSEIFPTHLRSQGVAVGMFSYFAASIILLVAGPIAMDNIGWRFMLVFAVPTCCYCLFPETAGRSLEDINAGFGDPVAVNYFNATAEEIKEFDAVMHVENANGA bitunicate_ascomycetes Aspergillus_niger Aspergillus_niger AM270372 119529..119676 Pel,H.J.,_de_Winde,J.H.,_Archer,D.B.,_Dyer,P.S.,_Hofmann,G.,_Schaap,P.J.,_Turner,G.,_de_Vries,R.P.,_Albang,R.,_Albermann,K.,_Andersen,M.R.,_Bendtsen,J.D.,_Benen,J.A.,_van_den_Berg,M.,_Breestraat,S.,_Caddick,M.X.,_Contreras,R.,_Cornell,M.,_Coutinho,P.M.,_Danchin,E.G.,_Debets,A.J.,_Dekker,P.,_van_Dijck,P.W.,_van_Dijk,A.,_Dijkhuizen,L.,_Driessen,A.J.,_dEnfert,C.,_Geysens,S.,_Goosen,C.,_Groot,G.S.,_de_Groot,P.W.,_Guillemette,T.,_Henrissat,B.,_Herweijer,M.,_van_den_Hombergh,J.P.,_van_den_Hondel,C.A.,_van_der_Heijden,R.T.,_van_der_Kaaij,R.M.,_Klis,F.M.,_Kools,H.J.,_Kubicek,C.P.,_van_Kuyk,P.A.,_Lauber,J.,_Lu,X.,_van_der_Maarel,M.J.,_Meulenberg,R.,_Menke,H.,_Mortimer,M.A.,_Nielsen,J.,_Oliver,S.G.,_Olsthoorn,M.,_Pal,K.,_van_Peij,N.N.,_Ram,A.F.,_Rinas,U.,_Roubos,J.A.,_Sagt,C.M.,_Schmoll,M.,_Sun,J.,_Ussery,D.,_Varga,J.,_Vervecken,W.,_van_de_Vondervoort,P.J.,_Wedler,H.,_Wosten,H.A.,_Zeng,A.P.,_van_Ooyen,A.J.,_Visser,J._and_Stam,H. NA 0:>148 NA NA 17-FEB-2011 Aspergillus_niger_contig_An16c0200,_genomic_contig. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A2R8C1_ASPNC.gb Aspergillus 134083465 Nat._Biotechnol._25_(2),_221-231_(2007) fungi AM270372 NA NA green_and_blue_molds sac_fungi 17259976 148 NA genomic_DNA NA CBS_513.88 NA Aspergillus_niger_Tiegh. NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5061 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_the_versatile_cell_factory_Aspergillus_niger_CBS_513.88 NA AM270372.1 CTAAGCCCCGTTGGCATTTTCCACGTGCATCACGGCATCGAACTCCTTTATTTCCTCCGCGGTTGCGTTAAAGTAGTTTACGGCAACAGGATCGCCAAACCCGGCATTAATATCCTCCAAGGAACGGCCGGCAGTTTCCGGAAATAGG > 103 ANI_1_962164 NA glycerophosphoinositol/_glycerophosphocholine_transporter XP_001398509.1 NA MRENTSDKRAAETVVADQEVESGPPSAYRPTRWQSNLTILSCYIANFSDGFQNQLANPTNVIFKKLLGKSGYPSEMQTRISNSLLIGAILGVVVLGYVSDMASRRAGLLFTSGLVTISTLMATLALQVHPSHNMLWYFVIVRGICGFGVGGEYPPSAAAGLEESDDFKRRYRGPVFVSFTTLMATTASPILMIIYLICLKATNNNLPITFHAIYSIATILPAIIMVLRFFMTDSTLYHHSNFKRQRKPARFYWVLVRRYWKRLFTTSLAFFLYDFINFPNSIMSSTIISSLVKDGNIQTTAIWQVILAALPVPGVIIGAWLTNLIGRRGTGMVGFAGYVVLGFIIGGTYAKLSQHIAAFVVLYGLLQAFGHLGPGATIGLISSESFPTAMRGMGYSVATAFGRTGAAVGTQCFTPLQDAAGDSATFYLLGGVAILGMIVYWFLPESGKLDLKKEDRELEEYLAGHGFTMEKKY bitunicate_ascomycetes Aspergillus_niger_CBS_513.88 Aspergillus_niger_CBS_513.88 XM_001398472 9..1430 NA NA 0:1422 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_166533).On_Jan_6,_2011_this_sequence_version_replaced_gi:145254061.Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_niger_CBS_513.88_glycerophosphoinositol/_glycerophosphocholine_transporter,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A2R9W0_ASPNC.gb Aspergillus 317037453 NA fungi XM_001398472 NA NA green_and_blue_molds sac_fungi NA 1422 NA mRNA NA NA NA Aspergillus_niger_Tiegh. NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 425011 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus NA NA XM_001398472.2 ATGCGCGAGAATACGTCCGACAAAAGAGCAGCCGAGACGGTAGTGGCTGACCAGGAGGTGGAAAGTGGTCCGCCGTCAGCCTACCGTCCCACGCGGTGGCAGAGCAATTTGACCATCCTGAGCTGCTATATCGCCAACTTCAGCGATGGGTTCCAAAACCAATTGGCCAATCCCACAAATGTCATCTTCAAGAAATTGTTGGGCAAATCCGGCTACCCATCGGAGATGCAGACGCGCATTAGCAATTCCCTGCTCATCGGTGCCATTCTGGGCGTGGTCGTGCTGGGATACGTCTCGGACATGGCCTCCCGGCGCGCGGGTCTTCTCTTCACCTCGGGCCTGGTCACCATCTCCACGCTGATGGCCACCCTGGCCCTGCAGGTGCACCCTTCTCACAACATGCTCTGGTACTTTGTCATCGTCCGTGGCATTTGTGGGTTTGGCGTGGGCGGAGAATACCCTCCCAGTGCGGCGGCCGGCCTGGAAGAATCGGACGATTTTAAGCGCCGCTACCGAGGACCTGTCTTTGTCTCCTTCACCACGCTGATGGCCACCACCGCCTCTCCCATTCTGATGATCATCTACCTGATCTGCCTCAAGGCCACCAACAACAACCTGCCCATCACCTTCCATGCCATCTACAGCATTGCCACCATCTTACCCGCCATCATCATGGTTTTGCGATTTTTCATGACCGACTCGACCTTGTATCACCATTCCAACTTCAAGCGCCAGCGGAAACCCGCCCGATTCTACTGGGTGCTGGTGCGCCGGTACTGGAAGCGGCTCTTCACCACCTCGCTGGCCTTCTTCCTCTACGACTTTATCAACTTCCCCAACAGCATCATGTCGAGCACCATCATCTCCTCGCTCGTCAAGGACGGCAACATCCAGACGACCGCCATCTGGCAGGTCATTCTGGCGGCGCTCCCCGTCCCCGGCGTCATCATCGGCGCATGGCTGACCAATTTGATCGGACGCCGGGGCACCGGAATGGTCGGATTCGCGGGCTACGTGGTCCTGGGTTTCATCATCGGTGGCACCTACGCCAAGCTCTCCCAGCATATCGCGGCCTTTGTCGTGCTCTACGGGTTGCTACAGGCCTTTGGACACCTGGGGCCCGGCGCCACCATCGGCCTCATATCCAGTGAATCATTCCCCACCGCCATGCGCGGCATGGGGTACAGTGTGGCCACGGCCTTTGGTCGCACGGGAGCGGCGGTGGGCACGCAGTGTTTTACGCCCCTGCAGGATGCCGCCGGAGACAGCGCCACCTTCTACCTTCTGGGTGGCGTGGCGATTCTGGGCATGATTGTGTACTGGTTCCTGCCGGAAAGCGGGAAATTGGATCTGAAGAAGGAGGATCGCGAGCTGGAGGAGTATCTGGCTGGCCATGGATTCACCATGGAAAAGAAATACTAA > 104 ANI_1_2236074 NA hypothetical_protein XP_001392965.1 NA MTSLKSLQNMRHAFTWNMLIAYALIATSVFSYGFDDAVYSTIQTMDSFEKQFGTYDNSTGEYGFSTQHLAFLNSLGLPAKAAGTFIGWAIGEYYGRRACFIGMQLMCIVGISVSYSATTFGQILAGRMIVQCFIGWEDWLVPMFLAEISPSVVRGATVVIYVFAHMFGSFICAIITYETAKLEGNVAWKIPIGVMWAFPCFNLLCSWLVPESPRWLVRKNKIQAATKQLEYLNKGKDIDVADEVAFLQASVEANAQTKGSWAELLQGTNRRRTMIAVMTAAFNQLTGQAFVSQYGSLFVKSLNVMNPFAFTLLSRGISTMGPLVTFSLVDTTGRRPIYLIGGTMTTALLMTCGGLGTGTITDGKKRGVCGVLMMYGLFYIMSFGSISVITGAETPHLRLRDKTSVVAWLIRIVCDFAVSYSLPYLLKAPYADLQSKVGFIYGSLAALGVVCGYFFLPELTGRSLEELEEMWQRRIPARKFADWDSDRTGSIEAKEGGTEEDAEKAKGGLSQVYVQKL bitunicate_ascomycetes Aspergillus_niger_CBS_513.88 Aspergillus_niger_CBS_513.88 XM_001392928 NA NA NA 0:1554 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_166524).Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_niger_CBS_513.88_hypothetical_protein,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_A5AAZ9_ASPNC.gb Aspergillus 145240636 NA fungi XM_001392928 NA NA green_and_blue_molds sac_fungi NA 1554 NA mRNA NA NA NA Aspergillus_niger_Tiegh. NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 425011 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus NA NA XM_001392928.1 ATGACAAGCTTAAAGAGCTTACAGAATATGCGTCATGCTTTCACTTGGAATATGCTGATAGCATACGCTCTCATTGCCACTAGTGTCTTTAGCTATGGCTTTGACGACGCTGTTTACTCGACTATCCAGACCATGGATTCTTTCGAGAAACAGTTCGGCACCTACGATAACTCTACTGGGGAATACGGGTTCAGTACCCAGCATTTGGCCTTCCTTAATTCCCTCGGTCTGCCTGCGAAAGCGGCTGGCACATTTATCGGATGGGCAATTGGAGAGTACTACGGACGTCGAGCCTGCTTCATCGGCATGCAGCTGATGTGCATCGTTGGTATCTCAGTCAGCTACAGCGCGACGACTTTCGGTCAGATCCTGGCCGGACGGATGATAGTGCAGTGTTTCATTGGCTGGGAGGACTGGCTTGTGCCCATGTTCCTCGCTGAGATCAGTCCTAGTGTGGTACGTGGGGCGACGGTGGTGATATACGTCTTTGCCCACATGTTTGGCTCATTTATTTGTGCTATCATCACGTATGAAACGGCCAAGTTAGAGGGAAACGTTGCTTGGAAAATCCCGATCGGTGTGATGTGGGCGTTTCCCTGCTTCAATCTGCTCTGTAGTTGGCTGGTGCCAGAAAGCCCTCGGTGGCTTGTCCGAAAGAACAAAATCCAGGCGGCGACGAAACAGCTCGAATATCTGAACAAGGGGAAGGATATAGATGTTGCTGATGAAGTGGCTTTCTTGCAGGCGTCTGTAGAGGCAAACGCACAGACGAAAGGTTCCTGGGCTGAACTACTCCAGGGGACCAATCGAAGAAGGACAATGATTGCAGTCATGACCGCGGCTTTCAACCAACTGACCGGACAAGCCTTCGTCAGTCAGTATGGCAGTCTGTTCGTCAAATCCCTAAATGTCATGAACCCGTTCGCCTTCACGCTATTATCCCGGGGCATCTCGACCATGGGTCCTCTAGTTACCTTCTCCTTAGTTGACACCACTGGAAGACGACCCATATACCTGATTGGCGGTACCATGACCACCGCCCTGCTCATGACTTGTGGTGGACTAGGGACAGGCACCATAACCGATGGCAAAAAGCGTGGAGTTTGCGGGGTGCTCATGATGTACGGGCTGTTCTACATCATGTCATTCGGGTCTATTTCCGTGATTACAGGCGCAGAAACACCCCACCTCCGACTCCGCGATAAGACCTCGGTTGTTGCCTGGCTTATCCGCATTGTATGCGACTTTGCAGTCTCCTACTCTCTTCCGTACCTACTCAAGGCCCCGTATGCCGATCTTCAGTCCAAGGTTGGCTTTATCTATGGATCCCTTGCAGCCCTGGGAGTGGTTTGCGGATACTTCTTCCTTCCCGAACTCACAGGACGCTCCCTGGAGGAGCTGGAAGAGATGTGGCAGCGGCGCATCCCTGCGCGAAAGTTCGCTGACTGGGACTCAGACCGCACCGGAAGTATTGAAGCAAAAGAGGGCGGAACAGAGGAGGATGCTGAGAAGGCCAAAGGAGGACTGTCTCAGGTATATGTACAAAAGCTGTAA > 105 NA MSTE monosaccharide_transporter AAL89826.1 NA MRLPKIKMPRKRPQDELNGDVLQQEAQATGPNGQKSEEGIVDTPIPLLTWRSFLMGIFVSMGGFLFGYDTGQISGFLEMPNFLQRYGQQQADGTYYFSNARSGLIVALLSIGTLIGALIAAPIADRVGRKWSISGWSAMVCVGITIQISSPFGKWYQVAMGRWVAGLGVGALSLLVPMYQAETGPRHIRGSLVSTYQLFITLGIFVANCINFGTEARNDTGSWRIPMGITYIWAMILGFGIALFPESARYDYRHGREAKAARTLSRISSWKEQERGEITWSHLFHAPRMKYRVAVGVALQALQQLTGANYFFYYGTTIFRGAGISNSYVTQMILGGVNFGTTFLGLYLIENYGRRRSLITGALWMFVCFMVFASVGHFSLDHENPERTHTAGVVMVVFACLFILGFASTWGPMVWTIIAELYPSEFRARAMSLATASNWLWNFLLAFFTPFITSAIDFRLGYVFAGCLFLAAGLVYVAVIEGRGRTLEEIDTMYVMKVPPWKELQVCISGHRSI bitunicate_ascomycetes Aspergillus_niger Aspergillus_niger AY081849 863..1186 vanKuyk,P.A.,_Ruijter,G.J.G._and_Visser,J. NA 0:324 NA NA 01-JAN-2003 Aspergillus_niger_monosaccharide_transporter_(mstE)_gene,_complete_cds. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_niger_Q8J0U7_ASPNG.gb Aspergillus 27461194 Unpublished fungi AY081849 monosaccharide_transporter NA green_and_blue_molds sac_fungi NA 324 NA genomic_DNA NA NA NA Aspergillus_niger_Tiegh. NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5061 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Cluster_and_expression_profile_analysis_of_six_genes_encoding_sugar_transporter-like_functions_in_Aspergillus_niger NA AY081849.1 ATGAGATTACCAAAAATTAAAATGCCTCGTAAGAGGCCGCAAGATGAACTCAATGGTGATGTGCTGCAGCAAGAGGCGCAAGCTACCGGCCCCAATGGCCAGAAATCTGAAGAGGGGATTGTGGATACACCTATCCCTCTGCTCACGTGGCGTTCTTTCTTAATGGGCATTTTCGTGTCAATGGGTGGTTTCCTCTTCGGCTACGACACTGGCCAAATTTCAGGCTTCTTGGAGATGCCGAACTTTCTCCAAAGATACGGACAACAGCAAGCTGACGGAACATACTATTTCTCCAATGCCCGTTCGGGTCTGATTGTCGCGCTG > 106 NA NA sugar_transport_protein BAG68494.1 NA MWTTTCGFRGRKLRLAITITAVLGFSLFGYDQGLMSGIIAGTEFTKEFKPLYIPGDATEAYKSHVSVLQGAVTACYELGCFFGAIFTMMFGERIGRTPLLVAGGIIMAVGALISTVSFGPHWGLGQFVIGRVISGLGNGMDTATIPVWQSECSKAHNRGFLVCFEGAIIAVGTFVAYWIDFGLSYVDSSVQWRFPVAFQILFAVFVTAGALMLPESPRWFVMRGYDKEACEVLGALSDLPADSEEVLADFNLMKADLAATEDSKASWKTLFTFGKTQEFQRMMIGCSGQFFQQFTGCNAAIYYSTLLFENNLHLEKRLSLIMGGVFATVYALATIPSFFMIEKVGRRKLFLIGFAGQGLSFIITMGCLIKDTSENAKGAAVGIFLFIVFFAFTTLPLPWIYPPEINPLRTRTMAASASTCTNWICNFAVVMFTPVFSSASPWGIYLFFALVNFTAIPFAWFFYCETAGRALEEIDIIFAKAHVEGKWAYQIANTLPKLTPEQMSQMATELGLDVSTQPVAYGAEKAELALSSGESQEKQTAN bitunicate_ascomycetes Aspergillus_oryzae Aspergillus_oryzae AB070823 1891..3519 Akao,T.,_Akeno,T.,_Goto,K._and_Akita,O. NA 0:1629 NA NA 09-AUG-2008 Aspergillus_oryzae_sgtA_gene_for_sugar_transport_protein,_complete_cds. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_B3XVT8_ASPOZ.gb Aspergillus 195972742 Unpublished fungi AB070823 NA NA green_and_blue_molds sac_fungi NA 1629 NA genomic_DNA NA RIB40 NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5062 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Nucleotide_sequences_of_genes_for_sugar_transport_proteins_in_same_class_from_Aspergillus_oryzae NA AB070823.1 ATGTGGACAACCACCTGTGGCTTTCGGGGCCGAAAGCTCCGTCTAGCCATCACCATCACCGCCGTCCTCGGTTTCTCGCTCTTCGGTTACGATCAGGGTCTGATGTCCGGTATTATCGCCGGTACTGAGTTTACGAAAGAGTTCAAACCGCTATACATCCCCGGCGACGCCACAGAGGCGTACAAGTCGCATGTCTCGGTTCTCCAAGGTGCGGTCACAGCTTGCTATGAATTGGGCTGTTTCTTCGGTGCCATTTTCACCATGATGTTCGGTGAGCGGATTGGTCGTACACCTTTGCTAGTGGCTGGTGGTATTATTATGGCTGTCGGTGCCTTGATCTCCACCGTTTCTTTCGGTCCTCACTGGGGTCTGGGCCAATTCGTTATTGGTCGTGTGATTTCAGGTCTTGGAAACGGTATGGATACTGCTACGATTCCAGTTTGGCAGTCGGAATGTTCTAAGGCCCATAACCGTGGTTTCCTTGTCTGTTTCGAAGGTGCCATTATCGCCGTTGGCACGTTTGTCGCCTACTGGATTGATTTCGGTCTCTCATATGTGGATTCCTCGGTTCAGTGGCGGTTCCCCGTGGCCTTCCAGATTCTCTTTGCCGTCTTCGTGACTGCCGGCGCTCTTATGCTGCCCGAGTCTCCTCGATGGTTTGTTATGCGGGGATATGATAAGGAAGCTTGCGAGGTGCTTGGTGCTCTTAGCGATCTTCCTGCCGATTCGGAGGAGGTGCTCGCCGATTTCAACCTGATGAAGGCTGACCTTGCTGCTACCGAGGATAGCAAGGCCAGTTGGAAAACACTCTTTACCTTTGGCAAGACCCAAGAGTTCCAGCGTATGATGATTGGTTGCTCTGGCCAGTTCTTCCAACAATTCACCGGATGCAACGCCGCTATCTACTACTCTACCCTGTTGTTCGAGAACAACCTGCACTTGGAGAAACGTCTCTCGTTGATTATGGGTGGTGTCTTTGCTACCGTCTACGCCCTTGCTACTATTCCTTCTTTCTTTATGATTGAGAAGGTCGGTCGTCGCAAGCTGTTCTTGATTGGTTTTGCGGGTCAGGGTCTCAGTTTCATTATTACTATGGGCTGCCTGATTAAGGACACTTCGGAGAACGCTAAGGGTGCTGCCGTCGGTATCTTCCTCTTTATTGTCTTTTTCGCCTTCACGACTCTCCCCTTGCCCTGGATCTACCCTCCCGAGATCAACCCGCTCCGTACCCGTACTATGGCTGCCTCTGCCTCCACTTGCACCAACTGGATCTGCAACTTTGCCGTCGTCATGTTCACTCCTGTCTTCTCCTCTGCCAGTCCCTGGGGTATTTACCTCTTCTTTGCCCTGGTCAACTTCACCGCTATTCCTTTCGCCTGGTTTTTCTACTGTGAGACTGCTGGCCGTGCGCTGGAGGAGATTGACATTATCTTTGCGAAGGCCCACGTGGAAGGCAAATGGGCTTACCAGATCGCCAACACCCTGCCCAAGCTCACCCCCGAACAGATGTCTCAGATGGCGACCGAGCTGGGCTTGGATGTGTCGACGCAGCCCGTCGCCTATGGCGCTGAGAAGGCTGAGCTTGCTCTTAGCAGTGGCGAGAGCCAGGAAAAACAGACTGCTAATTAG > 107 AOR_1_346024 NA quinate_permease XP_001827227.1 NA MGILNVVEDRPTPKSVYNWRVYLLAGIASCGSNMIGYTSAFIGTTITLDSFKEEFGLDKMSSAKVDLISENIVSLFIAGAFFGALLTYPVGHFLGRKWSLVIASAIFTLGAGLQLGANHSRGLGIMYAGRVLNGLGTGVASNIVPIYLSELAPPAIRGRLVGLYELGWQIGGMVGFWINYGVQKNMEPGHTQWLIPFAIQLIPAGLLFAGALWTKESPRWLFLKDRRQEAMANLCWIRQLSETDIYITEEVAAIDQALEEQAATIGIGFWKPFQSVGTRPKIMWRLFLGCMLFFWQNGSGINAINYYSPTIFKSIGVNSDTIGITTGLFGVVKAVMTFVWLLFLVDQLGRRKLLLIGAITGSICMWIIGAYICVVQPEENPTDHLNGGGIAAIFFFYLWTAIYTPTWNGTPWVINSEFFDPNIRSLAQAATTASNWLFNFLVSRFTEQMFAKMGYGVYFFFAALSFLAFFFTFFLIPETSGVPLEVVDRLFEVKPVWRANETVKAQMKEEEERFRFEIKEGNFDKSEEEHVEDGNETRS bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 XM_001827175 NA Sawano,T.,_Tanaka,T.,_Machida,M._and_Yamada,O. NA 0:1620 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884682).Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_oryzae_RIB40_quinate_permease,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2TXC9_ASPOR.gb Aspergillus 169785532 Submitted_(03-JUN-2004)_Contact:Toshihiko_Sawano_National_Institute_of_Technology_and_Evaluation,_Genome_Analysis_Center,_Department_Of_Biotechnology;_2-49-10_Nishihara,_Shibuya-ku,_Tokyo_151-0066,_Japan fungi XM_001827175 NA NA green_and_blue_molds sac_fungi NA 1620 NA mRNA NA NA NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001827175.1 ATGGGCATCCTTAACGTCGTCGAGGATCGTCCTACTCCTAAGAGTGTCTATAACTGGCGAGTGTACCTGCTCGCAGGCATTGCATCATGTGGTTCCAATATGATCGGTTATACTAGTGCCTTTATTGGTACAACCATCACACTGGACTCCTTTAAAGAGGAATTCGGCTTGGATAAGATGTCATCTGCGAAGGTGGACTTGATTAGCGAGAATATTGTCTCGCTGTTCATTGCCGGTGCCTTCTTTGGAGCCCTCTTAACCTACCCTGTTGGCCATTTCCTGGGACGCAAATGGAGCTTGGTGATCGCTTCAGCTATCTTTACGTTAGGAGCTGGTCTCCAGCTGGGTGCCAACCACTCCCGCGGACTTGGAATTATGTATGCTGGACGAGTCCTGAATGGACTCGGTACTGGTGTCGCCTCGAACATTGTCCCAATCTATCTCTCTGAACTGGCACCTCCGGCCATCCGTGGGCGACTTGTCGGTCTCTATGAGCTCGGCTGGCAGATTGGTGGTATGGTGGGATTCTGGATCAACTACGGTGTCCAAAAAAACATGGAACCTGGCCATACGCAATGGTTGATCCCATTTGCCATTCAGCTGATTCCGGCTGGGCTGCTTTTCGCTGGTGCCTTATGGACAAAGGAATCCCCTCGGTGGCTCTTCCTGAAGGACCGCCGACAGGAAGCAATGGCAAACCTCTGCTGGATTCGTCAGTTGAGCGAGACCGATATTTATATCACCGAGGAGGTGGCCGCTATCGACCAAGCGCTTGAAGAGCAGGCAGCCACCATTGGTATTGGATTCTGGAAACCCTTCCAGTCTGTTGGCACACGCCCAAAGATCATGTGGCGTCTCTTCCTGGGCTGCATGTTGTTCTTCTGGCAGAATGGATCGGGTATCAACGCGATCAACTACTACAGTCCCACCATCTTCAAAAGTATCGGTGTCAATAGCGATACGATCGGAATCACCACAGGATTGTTCGGCGTGGTGAAAGCCGTCATGACCTTCGTGTGGCTTCTGTTCCTGGTCGACCAGTTGGGAAGACGGAAGCTCCTCCTCATCGGTGCCATCACGGGCTCGATCTGTATGTGGATTATCGGTGCCTACATCTGCGTCGTCCAGCCCGAGGAAAACCCCACCGACCACTTGAACGGTGGTGGTATTGCAGCTATCTTCTTCTTCTACCTGTGGACAGCGATCTACACGCCTACATGGAACGGCACACCGTGGGTTATCAACTCGGAATTCTTCGACCCCAATATTCGTTCCTTGGCCCAGGCCGCAACCACCGCCAGTAACTGGCTCTTCAACTTCCTTGTTTCCCGTTTCACGGAGCAAATGTTCGCCAAGATGGGCTATGGAGTGTACTTCTTCTTCGCCGCCTTATCCTTCCTCGCCTTCTTCTTTACCTTCTTCCTCATTCCCGAGACTAGCGGTGTCCCGCTGGAAGTTGTGGACCGCCTGTTCGAGGTTAAGCCGGTGTGGCGGGCCAACGAGACGGTTAAGGCTCAGATGAAGGAGGAGGAAGAGCGATTCCGCTTCGAGATTAAGGAGGGCAATTTTGATAAGAGCGAAGAGGAACATGTGGAGGATGGCAATGAGACGAGGTCATAG > 108 AO090138000096 unnamed_protein_product;_predicted_transporter_(major_facilitator_superfamily) NA BAE64473.1 NA MDETKYVAHERQVDVTVQGPIDIENPLSGIPRDQLLRDVEDYAQEYDLHDILPLLKKGALVAQRPNQYDDIPELSPEDRQYLRQETTNRWKHPWALYYTIILNSIAAAIQGWDQTGSNGANLTFAHQFGIPQDPPDCTSPAECSRNQWIVGAINSVPYMTIAIFAGWISDPLNHWLGRKWVIFIAAVFSLIAPIACALTQSWGQLMACRVLLGIGMGLKEVTVPVLSAENAPTNVRGGLVMSWQIWTAFGIFLGTCANLAVVNTGAIAWRLQLGSAFIPAVPLLLGVYWCPESPRWLLTKNNARKAYNSLLRLRNSPLQAARDLYKIHSQIKMERKLIETSTEFSKSDNMIVRFIELFTVPRNRRATQASGIVMIGQQMCGINIIAFYSSSIFAKAGASNIEALLASFGFGFVNFLFAWPAVWTIDTFGRRWLLLATFPNMCWTLLAAGFCFWIPEEQKAAHLGGIALFIYLFNIFYSPGEGPVPFTYSAEVFPVSHREIGMAWAVATNNFWAAVLSLTFPYILREFKPQGAFGFYAGLNIVALVLIFLFLPETKQRSLEELDRVFSESTRAHAKYQLTEALPWWFKRHVLRQKNAVCRDLYDENFAVNVVPRNFKSGNVVQLESVNV bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 AP007170 197737..198479 Machida,M.,_Asai,K.,_Sano,M.,_Tanaka,T.,_Kumagai,T.,_Terai,G.,_Kusumoto,K.,_Arima,T.,_Akita,O.,_Kashiwagi,Y.,_Abe,K.,_Gomi,K.,_Horiuchi,H.,_Kitamoto,K.,_Kobayashi,T.,_Takeuchi,M.,_Denning,D.W.,_Galagan,J.E.,_Nierman,W.C.,_Yu,J.,_Archer,D.B.,_Bennett,J.W.,_Bhatnagar,D.,_Cleveland,T.E.,_Fedorova,N.D.,_Gotoh,O.,_Horikawa,H.,_Hosoyama,A.,_Ichinomiya,M.,_Igarashi,R.,_Iwashita,K.,_Juvvadi,P.R.,_Kato,M.,_Kato,Y.,_Kin,T.,_Kokubun,A.,_Maeda,H.,_Maeyama,N.,_Maruyama,J.,_Nagasaki,H.,_Nakajima,T.,_Oda,K.,_Okada,K.,_Paulsen,I.,_Sakamoto,K.,_Sawano,T.,_Takahashi,M.,_Takase,K.,_Terabayashi,Y.,_Wortman,J.R.,_Yamada,O.,_Yamagata,Y.,_Anazawa,H.,_Hata,Y.,_Koide,Y.,_Komori,T.,_Koyama,Y.,_Minetoki,T.,_Suharnan,S.,_Tanaka,A.,_Isono,K.,_Kuhara,S.,_Ogasawara,N._and_Kikuchi,H. NA 0:>743 URL:http://www.bio.nite.go.jp/dogan/Top. NA 04-JUN-2011 Aspergillus_oryzae_RIB40_DNA,_SC138. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2U1U2_ASPOR.gb Aspergillus 83774268 Nature_438_(7071),_1157-1161_(2005) fungi AP007170 NA NA green_and_blue_molds sac_fungi 16372010 743 NA genomic_DNA NA RIB_40 NA Eurotium_oryzae NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_Aspergillus_oryzae NA AP007170.1 TCACACATTCACACTCTCCAGCTGCACAACATTCCCTGACTTGAAATTCCTCGGCACAACATTGACCGCGAAATTCTCATCATACAGATCCCGGCAAACAGCATTCTTCTGGCGGAGCACATGCCGCTTAAACCACCATGGTAGCGCCTCAGTCAACTGGTACTTGGCATGAGCGCGGGTCGACTCGCTAAAGACACGGTCCAACTCCTCGAGAGATCTTTGCTTGGTCTCGGGCAGGAAAAGGAAGATCAGGACTAAGGCGACGATGTTCAGACCCGCGTAGAAACCAAAGGCGCCTTGTGGCTTGAACTCTCGCAGAATGTACGGGAATGTGAGAGATAGCACGGCGGCCCAGAAGTTATTTGTTGCAACTGCCCATGCCATACCGATTTCACGATGCGAGACTGGGAAGACTTCGGCGGAGTAGGTGAATGGCACGGGACCTTCACCGGGCGAGTAGAAGATGTTGAAGAGGTATATGAAAAGTGCGATGCCACCCAGATGAGCGGCCTTTTGCTCTTCTGGAATCCAGAAACAGAAGCCGGCTGCTAGGAGTGTCCAGCACATGTTGGGGAAGGTGGCAAGAAGGAGCCAGCGACGACCGAAGGTATCGATGGTCCAGACGGCGGGCCAGGCGAAGAGGAAGTTGACAAAACCGAAGCCAAAGGATGCGAGGAGCGCCTCGATGTTGCTTGCACCGGCCTTGGCGAAGATCGAAGAGGAGTAAAATGCGATGATATTAA > 109 AO090120000417 unnamed_protein_product;_permeases_of_the_major_facilitator_superfamily NA BAE62998.1 NA MAGSKAVSRVFRIYWLTAIVCCGGILFGYDSGVIGGVLTFDSFLRDFHCTPDVQTRVSAIAVGIQQAGALAGCLAIWPVTNRHGRRRAMMYCSAIFCLGVIFEVINSHSLPVFYLGRVICGLGIGGSATVIPIYLSEMSPTDMRARLGSCYQFTFTVGILVSYWVDYGIQFRAPTAAQWQIPLALQLVPGALMGLGMLSLDESVRWLLSQGDSPRAWTSLTWIRASSGPSIAAEFVQIKEGIEADRHATADFHVRELLERPNARRFLLGISLFLAQQSTGATAMAYFGPQFFSLLVGGSGTNQSLTLLLTGVFGALKVISCLAFIIWVAERFGRRPLLILGALAMSLCMASTAFVVRSDPSTTPTQTTSNSIKSTGILTISLIYLDIIAYNFSWGPLPWPCTAELFNTRIREPGVAAGVAAQWLGNFVWSASTPYILAGMGWATFLLFGVLDLAIAGFVWGCLPETGGKSLEEIEVLFEQIVPDEEGEACLGKSDDRCSISSSSSRHRDREGGERYGSIEE bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 AP007166 1104963..1104987 Machida,M.,_Asai,K.,_Sano,M.,_Tanaka,T.,_Kumagai,T.,_Terai,G.,_Kusumoto,K.,_Arima,T.,_Akita,O.,_Kashiwagi,Y.,_Abe,K.,_Gomi,K.,_Horiuchi,H.,_Kitamoto,K.,_Kobayashi,T.,_Takeuchi,M.,_Denning,D.W.,_Galagan,J.E.,_Nierman,W.C.,_Yu,J.,_Archer,D.B.,_Bennett,J.W.,_Bhatnagar,D.,_Cleveland,T.E.,_Fedorova,N.D.,_Gotoh,O.,_Horikawa,H.,_Hosoyama,A.,_Ichinomiya,M.,_Igarashi,R.,_Iwashita,K.,_Juvvadi,P.R.,_Kato,M.,_Kato,Y.,_Kin,T.,_Kokubun,A.,_Maeda,H.,_Maeyama,N.,_Maruyama,J.,_Nagasaki,H.,_Nakajima,T.,_Oda,K.,_Okada,K.,_Paulsen,I.,_Sakamoto,K.,_Sawano,T.,_Takahashi,M.,_Takase,K.,_Terabayashi,Y.,_Wortman,J.R.,_Yamada,O.,_Yamagata,Y.,_Anazawa,H.,_Hata,Y.,_Koide,Y.,_Komori,T.,_Koyama,Y.,_Minetoki,T.,_Suharnan,S.,_Tanaka,A.,_Isono,K.,_Kuhara,S.,_Ogasawara,N._and_Kikuchi,H. NA 0:25 URL:http://www.bio.nite.go.jp/dogan/Top. NA 04-JUN-2011 Aspergillus_oryzae_RIB40_DNA,_SC113. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2U617_ASPOR.gb Aspergillus 83772512 Nature_438_(7071),_1157-1161_(2005) fungi AP007166 NA NA green_and_blue_molds sac_fungi 16372010 25 NA genomic_DNA NA RIB_40 NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_Aspergillus_oryzae NA AP007166.1 ATGGCGGGCTCCAAAGCTGTCTCCA > 110 AOR_1_442134 NA hexose_carrier_protein XP_001822467.1 NA MAPTFAGLSGRPLSLAVSTVATMGFLLFGYDQGVMSGIISDKAFNNVFTATKDNDTMQALVTAVYELGCLAGAIFALVFGDRTGRRWMIFSGAIVMIIGVIIQVTSFVGHIPLLQFFIGRVITGIGNGMNTSTIPTYQAECSKTSNRGLLICIEGGVIAIGTAIAYWIDFGAHYGPDDLVWRFPIAFQIVFGVIIIVGMFFLPDSPRYLISKDRIQEGEYVLAALGGYEVHDQETQIQKNLVIDSIRASGAGATTRYRDLLTGGRSQHLRRMLIGSSSQIFQQLSGCNAVIYYLPVLLKQSLHQSNDEALLIGGINMIVYAIFATFSWFFIEKIGRRKLFLGGSIIQTIAMVITFACLIPDDTQVSKGAVFGLFLYMAAFGAAWLPLPWLYPAELSPIKTRAKANAVSTCSNWLFNFTVVMITPVMIAHIGWGTYLFFAALNALFIPIIWLFYPETANRSLEEIDIIFAKGYTENISYVKASKDLPKLNDEEIEQKANEYGFGNSTEDPEKATAAEYSPSTSE bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 XM_001822415 NA Sawano,T.,_Tanaka,T.,_Machida,M._and_Yamada,O. NA 0:1572 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884670).Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_oryzae_RIB40_hexose_carrier_protein,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2UAT1_ASPOR.gb Aspergillus 169776000 Submitted_(03-JUN-2004)_Contact:Toshihiko_Sawano_National_Institute_of_Technology_and_Evaluation,_Genome_Analysis_Center,_Department_Of_Biotechnology;_2-49-10_Nishihara,_Shibuya-ku,_Tokyo_151-0066,_Japan fungi XM_001822415 NA NA green_and_blue_molds sac_fungi NA 1572 NA mRNA NA NA NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001822415.1 ATGGCGCCTACATTTGCGGGTTTGTCGGGCAGGCCACTGTCGTTGGCCGTGTCCACCGTAGCTACGATGGGTTTCTTGTTGTTCGGATATGACCAGGGTGTCATGTCTGGTATCATTAGTGACAAGGCGTTCAACAATGTCTTTACTGCCACCAAGGACAATGATACAATGCAGGCACTGGTAACAGCTGTTTACGAATTGGGTTGTTTGGCAGGTGCTATTTTTGCCCTGGTGTTTGGTGACCGTACTGGCCGTCGGTGGATGATCTTCTCTGGCGCCATTGTCATGATCATTGGTGTTATTATCCAGGTTACCTCGTTTGTCGGCCACATTCCTCTGCTTCAGTTCTTCATTGGTCGTGTTATCACGGGTATTGGTAACGGCATGAACACTTCCACCATTCCTACATACCAGGCCGAATGCTCCAAGACCAGTAACCGTGGTCTCTTGATTTGTATTGAGGGGGGTGTCATTGCTATTGGTACTGCAATTGCGTACTGGATTGACTTCGGAGCCCACTATGGTCCCGATGACTTGGTGTGGCGGTTCCCCATTGCTTTCCAGATCGTCTTCGGTGTCATCATTATTGTTGGCATGTTCTTCCTCCCTGACTCTCCTCGTTACTTGATCTCCAAGGACCGCATCCAGGAGGGTGAGTACGTGCTCGCTGCCCTGGGTGGTTATGAGGTCCATGACCAGGAGACCCAAATCCAGAAGAACCTGGTCATCGATTCAATCAGAGCTTCCGGTGCTGGAGCCACTACTCGCTACAGGGACCTGCTTACTGGCGGCCGTTCTCAACATCTGCGTCGTATGCTTATCGGATCTTCTTCCCAAATCTTCCAACAGCTATCGGGTTGCAACGCTGTCATCTACTACCTTCCCGTTCTTCTGAAGCAGTCCCTGCATCAGAGCAATGATGAGGCCCTTCTCATTGGTGGTATCAACATGATCGTTTATGCGATCTTTGCCACCTTCTCCTGGTTCTTTATTGAGAAGATTGGTCGTCGCAAGCTGTTCTTGGGTGGTTCCATTATCCAGACCATTGCCATGGTCATCACTTTTGCTTGTTTGATCCCTGATGACACGCAGGTATCCAAGGGTGCTGTGTTCGGTCTGTTCTTGTATATGGCTGCCTTCGGTGCTGCTTGGCTTCCTCTTCCCTGGCTGTACCCTGCTGAGCTGTCCCCCATCAAGACTCGTGCCAAGGCCAATGCTGTCTCTACCTGCAGCAACTGGCTCTTTAACTTCACTGTTGTCATGATTACTCCCGTTATGATCGCTCACATTGGCTGGGGTACTTACCTGTTCTTTGCCGCCCTGAACGCCCTGTTCATCCCTATCATCTGGCTCTTCTACCCTGAGACCGCCAACCGAAGTTTGGAAGAAATCGATATCATCTTCGCCAAGGGCTACACCGAAAACATCAGCTATGTCAAGGCCTCCAAGGACCTACCGAAGCTTAACGATGAGGAGATCGAGCAGAAGGCGAACGAGTATGGATTCGGCAACTCCACCGAAGATCCCGAAAAGGCCACTGCTGCCGAGTACTCCCCTTCAACCTCGGAGTAA > 111 AO090012000704 unnamed_protein_product;_predicted_transporter_(major_facilitator_superfamily) NA BAE60836.1 NA MGKNLGFVRAYYTVALACTGSFLFAYDTGIIGGVLTLKSFQNSFRYTEKQKSTINSNSNSLLQAGAFFACFFVWPFTAKYGRRWSIALASFIFCIGAIIQVIPTHSVAAFYVARVISGIGVGMATVIVPMYTSEMAPKSIRGKLGSFFQGFFVLGVFFSYWIDYAVEKHIPETSDSQWQIPIGLQLVPGGVLGLGMLFLKESVRWLAKKGRHDEAMRSLVWIRGGEETEEVRAEMAEILDGIEAENLATEGVTWKEILRVPGNLHRMCIAVTIQIGVQITGNTSLAYYAPQIFQAVGAGDNSLFISGFFGVAKVISCWFFLLFLVERIGRRWSLIIGAFLMGSLMLIVGILAKLFPPDPDATTISSAGIASILMVYFEAMCYNMSWGPVPWLYMSEIFPTRIREVGIAVGTATQWLFNFVFSQATPHALDSMGWGMFLMFCIFNWILVVYAWLFIKETTGKSLEEMEEVFNSRVGLYHKERPLDEQVQNKHSTERPTSTMRFAVIYVEG bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 AP007161 1785549..1785606 Machida,M.,_Asai,K.,_Sano,M.,_Tanaka,T.,_Kumagai,T.,_Terai,G.,_Kusumoto,K.,_Arima,T.,_Akita,O.,_Kashiwagi,Y.,_Abe,K.,_Gomi,K.,_Horiuchi,H.,_Kitamoto,K.,_Kobayashi,T.,_Takeuchi,M.,_Denning,D.W.,_Galagan,J.E.,_Nierman,W.C.,_Yu,J.,_Archer,D.B.,_Bennett,J.W.,_Bhatnagar,D.,_Cleveland,T.E.,_Fedorova,N.D.,_Gotoh,O.,_Horikawa,H.,_Hosoyama,A.,_Ichinomiya,M.,_Igarashi,R.,_Iwashita,K.,_Juvvadi,P.R.,_Kato,M.,_Kato,Y.,_Kin,T.,_Kokubun,A.,_Maeda,H.,_Maeyama,N.,_Maruyama,J.,_Nagasaki,H.,_Nakajima,T.,_Oda,K.,_Okada,K.,_Paulsen,I.,_Sakamoto,K.,_Sawano,T.,_Takahashi,M.,_Takase,K.,_Terabayashi,Y.,_Wortman,J.R.,_Yamada,O.,_Yamagata,Y.,_Anazawa,H.,_Hata,Y.,_Koide,Y.,_Komori,T.,_Koyama,Y.,_Minetoki,T.,_Suharnan,S.,_Tanaka,A.,_Isono,K.,_Kuhara,S.,_Ogasawara,N._and_Kikuchi,H. NA 0:>58 URL:http://www.bio.nite.go.jp/dogan/Top. NA 04-JUN-2011 Aspergillus_oryzae_RIB40_DNA,_SC012. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2UC79_ASPOR.gb Aspergillus 83770115 Nature_438_(7071),_1157-1161_(2005) fungi AP007161 NA NA green_and_blue_molds sac_fungi 16372010 58 NA genomic_DNA NA RIB_40 NA Eurotium_oryzae NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_Aspergillus_oryzae NA AP007161.1 TTATCCTTCTACGTAAATGACGGCGAATCGCATCGTACTTGTAGGCCTTTCTGTAGAA > 112 AOR_1_904014 NA MFS_monosaccharide_transporter XP_001821935.1 NA MGVSNLMARLKPQADHEHQEHSDTPTPVRADSNLEKDNAMIDDSPVKYLTWRSFILGLCVSMGGFIFGYSTGQIAGFTTMNDFKMRFAEQHADGTYAFSNVRNGLIVGLLSIGTMIGALVAAPIADRIGRKYSISFWSVIHMVGIIIQIATDDNWVQVAMGRWVAGLGVGALSSIVPMYQSESAPRQVRGAMVSAFQLFVAFGIFISYLVNFGTESINGTASWRITMGIGFAWPLILGVGTLFLPESPRYAYRNGRIEEAREVMCKLYGVGPNHRCIAQEMKDMKDKLDEEKAAGQAGIFEVFTGPRMFYRVMLGIALQSLQQLTGANFLFYYGNTIFTSTGLNNSYVTQIILGAVNFGMTLPGLYVVEHFGRRNSLMVGASWMFICFMIWASIGHFALDLENPPNTPQAGTAMIVFTCFFIVGFATTWGPIVWAICGEMYPARYRAVCIGLATAANWTWNFLISFFTPFISSAIDFAYGYVFAGCCFAAVLVVFFFVNETQGRTLEEVDTMYVLHVKPWKSANWTPPEGIVRDLHGPPASPKQEGRAEHSEPATEIRE bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 XM_001821883 57..1736 Sawano,T.,_Tanaka,T.,_Machida,M._and_Yamada,O. NA 0:1680 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884668).On_Jan_7,_2011_this_sequence_version_replaced_gi:169774934.Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_oryzae_RIB40_MFS_monosaccharide_transporter,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2UET2_ASPOR.gb Aspergillus 317147184 Submitted_(03-JUN-2004)_Contact:Toshihiko_Sawano_National_Institute_of_Technology_and_Evaluation,_Genome_Analysis_Center,_Department_Of_Biotechnology;_2-49-10_Nishihara,_Shibuya-ku,_Tokyo_151-0066,_Japan fungi XM_001821883 NA NA green_and_blue_molds sac_fungi NA 1680 NA mRNA NA NA NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001821883.2 ATGGGTGTCTCTAATCTGATGGCCCGGCTCAAGCCTCAGGCCGACCATGAACACCAGGAGCACTCCGATACTCCTACCCCAGTCAGAGCCGACTCAAACTTGGAGAAGGATAATGCCATGATTGACGACAGCCCCGTCAAGTATCTGACATGGCGGTCCTTCATCCTGGGTTTGTGTGTCTCGATGGGTGGTTTTATCTTCGGTTACTCCACCGGTCAAATTGCTGGCTTTACGACTATGAATGATTTCAAGATGCGCTTTGCGGAACAACATGCGGATGGAACATATGCTTTCAGCAACGTGCGCAATGGTTTGATTGTCGGTCTGTTGTCCATTGGTACTATGATTGGCGCCCTTGTCGCCGCTCCTATCGCCGACCGCATTGGTCGCAAATACTCTATCTCCTTCTGGTCGGTGATTCACATGGTTGGTATCATCATCCAGATCGCCACCGATGACAACTGGGTCCAAGTTGCTATGGGTCGTTGGGTGGCCGGTTTGGGTGTCGGCGCTCTGTCCAGCATCGTTCCTATGTACCAGAGTGAATCTGCTCCTCGTCAGGTCCGTGGTGCCATGGTCAGCGCCTTCCAGCTGTTCGTTGCCTTCGGTATTTTCATCTCTTATCTCGTCAACTTCGGTACCGAATCCATCAACGGTACCGCTTCCTGGCGTATCACTATGGGCATTGGCTTCGCCTGGCCCTTGATCTTGGGTGTTGGCACTCTGTTCCTTCCCGAGTCTCCCCGTTATGCCTACCGTAACGGTCGTATCGAAGAAGCCCGTGAGGTTATGTGCAAGCTTTACGGCGTCGGCCCCAACCACCGGTGCATCGCCCAGGAGATGAAGGACATGAAGGACAAGCTCGATGAGGAGAAGGCTGCCGGACAGGCTGGCATCTTCGAAGTCTTCACTGGTCCCCGTATGTTCTACCGTGTTATGCTGGGAATTGCTTTGCAGTCACTGCAGCAGCTCACTGGCGCCAATTTCCTCTTCTACTATGGTAACACCATCTTCACTTCTACCGGTCTGAACAACAGCTACGTCACCCAGATTATTCTGGGTGCCGTTAACTTCGGCATGACCCTTCCTGGTCTCTATGTTGTTGAGCACTTCGGCCGTCGTAATAGTCTGATGGTCGGTGCCTCCTGGATGTTTATCTGCTTTATGATCTGGGCCTCCATTGGTCACTTCGCCTTGGACTTGGAGAACCCTCCCAACACCCCTCAGGCTGGTACTGCCATGATTGTCTTCACTTGCTTCTTCATCGTCGGCTTCGCCACCACCTGGGGACCTATTGTGTGGGCTATCTGTGGTGAGATGTACCCTGCTCGCTACCGTGCTGTCTGCATTGGTCTTGCCACTGCCGCCAATTGGACCTGGAACTTCCTGATCTCTTTCTTCACCCCCTTCATCTCCAGCGCTATCGACTTTGCCTACGGTTACGTCTTTGCAGGCTGCTGCTTCGCCGCCGTGCTTGTGGTCTTCTTCTTCGTCAACGAGACCCAGGGTCGCACCCTTGAGGAAGTCGACACCATGTACGTCCTCCACGTCAAGCCCTGGAAGAGTGCCAACTGGACGCCCCCGGAGGGTATCGTCCGCGATCTCCACGGGCCCCCCGCTTCCCCCAAGCAGGAGGGTCGGGCTGAGCACAGCGAGCCCGCCACCGAGATCCGCGAGTAA > 113 AOR_1_430154 NA MFS_quinate_transporter XP_001819464.1 NA MGRKLGLFRATYLASASCMGSFAFAFDTGVISGVLTLPSFQRDFRYSTSQKTTVNSNAVSILQAGAFFGCFFTMPIASKLGRRSGLILSSLVFTVGTILQIINAHTLGTFYAGRVIAGLGIGAATTLIPMYAAEMAPKEIRGRLGACFQLFFATGVMVAYWVTYAVSKDQPDATKQWQIALGLQLLPSTLLLLGMCTVKESARWLAAKGKKDKAWESLKWVRGGEETEELQKEFDEIIAGIEEEARVKENFTIRELLLPVNRYRIFIAFTIQLCAQLTGNTSLAYYANQIFEAVGAEGEAKLVTGFFGVVKVVGVSIFQLFVLDRVGRRVPFMVGAFAMGSFMLIIACVLATHPTQSGGSNSSPTKAGIAMIIMTYAEAFSFNMSWGPLPWLYVGEIFSSRTREVGVAVGAASQWLFNFMMSQITPHAITNIGWRMFLMFAIFNYAIIVYSWFFLKETSNHSLEEMQAVFGGGDPPKEASLAGEKGEIDATVRP bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 XM_001819412 NA Sawano,T.,_Tanaka,T.,_Machida,M._and_Yamada,O. NA 0:1485 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884664).Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_oryzae_RIB40_MFS_quinate_transporter,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2ULV3_ASPOR.gb Aspergillus 169769988 Submitted_(03-JUN-2004)_Contact:Toshihiko_Sawano_National_Institute_of_Technology_and_Evaluation,_Genome_Analysis_Center,_Department_Of_Biotechnology;_2-49-10_Nishihara,_Shibuya-ku,_Tokyo_151-0066,_Japan fungi XM_001819412 NA NA green_and_blue_molds sac_fungi NA 1485 NA mRNA NA NA NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001819412.1 ATGGGTCGCAAGCTCGGCCTCTTCCGCGCCACATACTTGGCGTCTGCCAGCTGTATGGGCTCTTTTGCATTCGCATTTGACACGGGTGTTATTAGTGGTGTCCTCACATTGCCATCCTTTCAGCGTGACTTCCGATATAGTACTTCGCAGAAAACGACAGTCAACTCCAACGCGGTGTCAATTCTTCAGGCTGGGGCATTTTTCGGATGCTTCTTCACAATGCCTATAGCCTCGAAGCTGGGCCGCCGCTCTGGACTCATTCTGAGCTCACTTGTGTTCACCGTAGGGACCATCTTACAGATTATTAATGCCCATACCCTGGGAACTTTCTACGCTGGCAGAGTGATTGCCGGACTTGGTATCGGCGCCGCCACTACGTTGATACCTATGTATGCAGCAGAAATGGCCCCTAAAGAGATTCGAGGAAGACTCGGGGCCTGTTTCCAATTGTTCTTTGCCACGGGAGTTATGGTCGCATATTGGGTTACTTACGCTGTATCGAAGGACCAGCCAGATGCCACGAAGCAATGGCAGATTGCGTTGGGGCTGCAATTACTGCCGTCCACATTGCTTCTACTCGGCATGTGCACAGTTAAAGAGAGTGCTCGGTGGCTTGCCGCAAAGGGTAAGAAAGATAAAGCATGGGAGTCGTTGAAATGGGTTCGTGGAGGTGAAGAAACTGAGGAGCTCCAGAAGGAATTTGATGAAATCATTGCGGGGATCGAGGAAGAGGCTCGTGTCAAGGAGAATTTCACCATCCGCGAGCTTCTTCTGCCAGTGAATCGTTATCGCATTTTCATTGCTTTTACAATTCAGCTATGCGCCCAGTTAACGGGAAACACATCGCTCGCTTACTATGCCAATCAGATCTTCGAAGCCGTGGGAGCGGAGGGCGAAGCTAAATTAGTGACCGGCTTTTTTGGCGTGGTCAAGGTAGTCGGAGTCTCTATTTTCCAACTGTTTGTTCTGGACCGTGTTGGAAGACGAGTTCCATTCATGGTTGGAGCATTCGCAATGGGTTCGTTTATGCTCATCATTGCATGTGTTCTGGCGACCCATCCCACACAATCGGGCGGGTCCAACTCTTCGCCAACGAAAGCGGGGATCGCCATGATTATCATGACCTATGCGGAGGCCTTTAGTTTCAATATGTCCTGGGGGCCTCTCCCGTGGTTGTATGTGGGTGAGATCTTCTCTAGTCGCACACGAGAAGTGGGAGTAGCCGTCGGTGCTGCGTCGCAGTGGTTGTTCAACTTTATGATGTCGCAGATAACGCCACACGCCATCACCAACATCGGTTGGAGAATGTTCCTGATGTTTGCGATTTTCAACTATGCGATCATAGTATATTCATGGTTCTTCCTGAAAGAGACATCCAACCATTCATTGGAAGAAATGCAAGCAGTCTTTGGGGGAGGTGACCCCCCAAAGGAGGCCAGTCTCGCTGGAGAGAAGGGCGAAATTGACGCCACGGTGCGACCATGA > 114 AOR_1_136154 NA sugar_transporter XP_001819313.1 NA MSVILRRLVHNEAMREDPKEIYGWRVYMLACSACFGGMLFGMETGIIGGVLTMDPFQVKYGLKNLGDIGEANLSANIVSTLQAGCFFGALIASPVADKWGRKTGLISASLIAIVGVIMQVAASGHLEAMYIGRLINGFGVGFASMINPLYVSENAPRAIRGGLTGLYQLFITMGIMLAFWINYGSSLHIKGTAQYMVPLAMQALPALLMLVGMLLCNESPRWLAKQDRWEDARKTLSRVRNLPSTHQYIENEFQDIVNQLEHERQLIGGSGFWDLMKEMWLIPGNRKRAMISIFLMVCQQMTGTNAINYYAPQIFENLGITGTTTGLFATGVYGIVKVVACAVFLVFVADSLGRRRSLLWTSVAQGLAMLYIGLYIRIAPPVEGQPVIPAGYVALVCIFLFAACFQFGWGPVCWIYVSEIPTARLRSLNVAMAAATQWLFNFVVSRAVPNMLATVGANGYGTYIIFACFCFSMGVWVWFFIPETKGLSLEKMDELFGATSSDTHLKTEDVERSASQVEGDHKDEVATETRVERV bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 XM_001819261 116..1720 Sawano,T.,_Tanaka,T.,_Machida,M._and_Yamada,O. NA 0:1605 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884664).On_Jan_7,_2011_this_sequence_version_replaced_gi:169769686.Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_oryzae_RIB40_sugar_transporter,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2UMA4_ASPOR.gb Aspergillus 317143204 Submitted_(03-JUN-2004)_Contact:Toshihiko_Sawano_National_Institute_of_Technology_and_Evaluation,_Genome_Analysis_Center,_Department_Of_Biotechnology;_2-49-10_Nishihara,_Shibuya-ku,_Tokyo_151-0066,_Japan fungi XM_001819261 NA NA green_and_blue_molds sac_fungi NA 1605 NA mRNA NA NA NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001819261.2 ATGTCAGTTATACTCCGAAGACTCGTCCACAATGAGGCGATGCGAGAGGACCCCAAGGAGATTTATGGATGGAGGGTGTACATGCTCGCGTGTTCGGCCTGCTTTGGCGGCATGCTTTTCGGAATGGAGACCGGTATCATAGGAGGTGTCCTTACGATGGATCCTTTCCAAGTGAAATATGGGTTAAAGAACCTTGGCGATATAGGAGAGGCCAATCTCTCCGCTAATATTGTATCCACATTACAGGCAGGGTGCTTCTTTGGCGCCCTCATCGCCTCCCCAGTAGCAGACAAATGGGGTCGAAAGACCGGGTTGATATCCGCATCGTTAATTGCTATCGTTGGCGTTATCATGCAAGTGGCAGCAAGCGGGCACCTGGAAGCTATGTACATCGGACGTCTAATCAACGGTTTCGGTGTCGGCTTCGCTTCGATGATCAATCCTCTCTATGTCTCTGAAAACGCCCCAAGAGCCATCCGTGGTGGTCTAACAGGCCTCTACCAACTGTTCATCACAATGGGAATTATGCTCGCCTTCTGGATCAACTACGGCTCTTCCCTCCACATCAAGGGCACGGCACAATACATGGTTCCACTTGCCATGCAGGCCCTCCCCGCCCTTCTTATGCTTGTGGGTATGCTCCTATGCAACGAATCCCCCCGTTGGCTCGCAAAACAAGACCGCTGGGAAGACGCTCGGAAGACGCTCTCCCGCGTGCGCAACCTCCCCTCAACACATCAGTACATTGAGAACGAGTTCCAAGATATCGTCAATCAACTTGAGCATGAGCGCCAACTCATCGGTGGTTCCGGCTTCTGGGACCTTATGAAAGAGATGTGGCTCATCCCAGGCAACCGCAAACGAGCCATGATCAGCATCTTCCTCATGGTCTGCCAGCAAATGACCGGCACGAACGCCATTAATTACTACGCACCACAGATCTTTGAAAATCTGGGCATCACCGGTACTACGACAGGCCTCTTCGCCACGGGAGTGTACGGGATCGTGAAGGTGGTGGCATGTGCCGTCTTCCTAGTCTTCGTCGCCGATTCTTTGGGCCGTCGACGCTCTCTGCTCTGGACCTCTGTCGCCCAGGGCCTAGCTATGCTCTACATCGGGTTATATATCCGCATTGCGCCACCGGTAGAAGGCCAGCCCGTGATCCCCGCTGGCTATGTCGCTCTCGTCTGTATCTTCCTCTTTGCCGCGTGCTTCCAGTTTGGCTGGGGGCCCGTCTGCTGGATCTATGTCTCCGAGATCCCGACTGCCCGACTGAGAAGTCTGAACGTCGCCATGGCTGCCGCGACCCAGTGGCTGTTCAACTTTGTCGTTTCTCGGGCTGTTCCCAATATGCTGGCGACCGTTGGTGCCAACGGTTACGGGACATACATCATTTTCGCCTGTTTTTGTTTCTCAATGGGCGTGTGGGTTTGGTTCTTTATTCCCGAAACCAAAGGTCTCTCACTGGAGAAAATGGATGAGCTCTTCGGTGCTACTAGCAGTGATACTCATTTGAAGACTGAAGATGTAGAGAGAAGTGCATCCCAAGTGGAAGGTGACCATAAAGATGAAGTTGCTACAGAAACTAGGGTAGAAAGGGTGTAA > 115 AO090001000381 unnamed_protein_product;_predicted_transporter_(major_facilitator_superfamily) NA BAE56904.1 NA MTERRLRRLGLFNREPRKGVRDVFDLESHGCIREGSRLPKERIPSGILIEAATQQSWRSTSWALKEPITGSCISVSIFRFNTYLGDPRYISCVAAACMVLYGYDASVYNSVQGSKNWVLYFNDPDDNMIGAVNTAYTVGAIFGGFFLGGPVADFLGRKYGMAIGCVMVIASTFMQTFAPRGNIACFLAGRCIIGIGQGIALTAGPIYIGELAPAEIRGKIMTFWQMFYSVGSFICFWVNYGCTEHKENLGEWDWKMVVIFQLLVPCLILKARKALQRVREPHEVEEELLKIREAIEYEKEAISGSYSALWKDKSLRKRMALALVINAGQQITGQGTLNTYSTKIYQKVFPNAGQIALINALNATFGIIFTLNAVWIIDRFGRKFLLIVGGIGMGICMIIVAAVETETPSIGDPGSDVKSTPVGISIVFLLFLFIFFYKPSWGATVWIWTSEIFSMNVRAQAVGMASQTQNVANAIVQQFFPTFLNNCGFYAFYMFAGINFLLSVFVFFFIPETKQVPLEEIDALFGGANHVTHGEELVAGEKQLQVMQSNTGTEKAEAVTIENAPTRQH bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 AP007154 957548..957679 Machida,M.,_Asai,K.,_Sano,M.,_Tanaka,T.,_Kumagai,T.,_Terai,G.,_Kusumoto,K.,_Arima,T.,_Akita,O.,_Kashiwagi,Y.,_Abe,K.,_Gomi,K.,_Horiuchi,H.,_Kitamoto,K.,_Kobayashi,T.,_Takeuchi,M.,_Denning,D.W.,_Galagan,J.E.,_Nierman,W.C.,_Yu,J.,_Archer,D.B.,_Bennett,J.W.,_Bhatnagar,D.,_Cleveland,T.E.,_Fedorova,N.D.,_Gotoh,O.,_Horikawa,H.,_Hosoyama,A.,_Ichinomiya,M.,_Igarashi,R.,_Iwashita,K.,_Juvvadi,P.R.,_Kato,M.,_Kato,Y.,_Kin,T.,_Kokubun,A.,_Maeda,H.,_Maeyama,N.,_Maruyama,J.,_Nagasaki,H.,_Nakajima,T.,_Oda,K.,_Okada,K.,_Paulsen,I.,_Sakamoto,K.,_Sawano,T.,_Takahashi,M.,_Takase,K.,_Terabayashi,Y.,_Wortman,J.R.,_Yamada,O.,_Yamagata,Y.,_Anazawa,H.,_Hata,Y.,_Koide,Y.,_Komori,T.,_Koyama,Y.,_Minetoki,T.,_Suharnan,S.,_Tanaka,A.,_Isono,K.,_Kuhara,S.,_Ogasawara,N._and_Kikuchi,H. NA 0:132 URL:http://www.bio.nite.go.jp/dogan/Top. NA 04-JUN-2011 Aspergillus_oryzae_RIB40_DNA,_SC001. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2UNG1_ASPOR.gb Aspergillus 83766426 Nature_438_(7071),_1157-1161_(2005) fungi AP007154 NA NA green_and_blue_molds sac_fungi 16372010 132 NA genomic_DNA NA RIB_40 NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_Aspergillus_oryzae NA AP007154.1 ATGACAGAGAGGAGGCTCAGACGTCTTGGTCTCTTTAATAGGGAGCCTCGCAAGGGAGTACGGGATGTTTTCGATCTAGAGTCGCATGGGTGCATCCGTGAGGGAAGCAGGTTACCGAAGGAGAGGATTCCT > 116 AO090001000069 unnamed_protein_product;_predicted_transporter_(major_facilitator_superfamily) NA BAE56629.1 NA MAGGMASQGISAKRAELAGGRVGWRGLVSSKKAFGIALFASLGGLVYGYNQGMFAQILTMRSFIDATQGYAEHTGTAQGMLTSILELGAWLGTLANGYLADALGRRVTVVVAVVVFCVGVIVQACTTNPDFVYAGRFVTGLGVGNLSMIVPLYNAELAPPEIRGSLVAVQQLAITFGIMVSFWIGYGTNFIGGTGEGQSIAAWEIPVCIQILPALVLAVGMMLFMPQSPRHLMNQGREEECLQTVARLRDASVDDMLVRIEFLEMKALRMFEEETARKKYPQYQDGSFKSRFMIGVHDYMSLITDKSLFKRTTVACLIMVFQQWNGINAPQIFKDLELGGTTTSLLATGVAGIFEFVFTIPAVLWVDNIGRKKILIAGGIGMAVCHFIVAGIIGSYQHTFAEHKAPGWVAVVFVWIFIINFAYSWGPVAWIVVSEVYPLSMRAKGVSIGGSSNWLNNFAVGLSTSPFLSASNYGTFIFFGCITTIGVFWVWFLVPETKGRTLEEMDELFGSGGMAAEDEARKRRIEREIGLLALLAGGGWSAGGNLGKALPGTSIGVTASEGPGAGHEIRWV bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 AP007154 153544..153688 Machida,M.,_Asai,K.,_Sano,M.,_Tanaka,T.,_Kumagai,T.,_Terai,G.,_Kusumoto,K.,_Arima,T.,_Akita,O.,_Kashiwagi,Y.,_Abe,K.,_Gomi,K.,_Horiuchi,H.,_Kitamoto,K.,_Kobayashi,T.,_Takeuchi,M.,_Denning,D.W.,_Galagan,J.E.,_Nierman,W.C.,_Yu,J.,_Archer,D.B.,_Bennett,J.W.,_Bhatnagar,D.,_Cleveland,T.E.,_Fedorova,N.D.,_Gotoh,O.,_Horikawa,H.,_Hosoyama,A.,_Ichinomiya,M.,_Igarashi,R.,_Iwashita,K.,_Juvvadi,P.R.,_Kato,M.,_Kato,Y.,_Kin,T.,_Kokubun,A.,_Maeda,H.,_Maeyama,N.,_Maruyama,J.,_Nagasaki,H.,_Nakajima,T.,_Oda,K.,_Okada,K.,_Paulsen,I.,_Sakamoto,K.,_Sawano,T.,_Takahashi,M.,_Takase,K.,_Terabayashi,Y.,_Wortman,J.R.,_Yamada,O.,_Yamagata,Y.,_Anazawa,H.,_Hata,Y.,_Koide,Y.,_Komori,T.,_Koyama,Y.,_Minetoki,T.,_Suharnan,S.,_Tanaka,A.,_Isono,K.,_Kuhara,S.,_Ogasawara,N._and_Kikuchi,H. NA 0:145 URL:http://www.bio.nite.go.jp/dogan/Top. NA 04-JUN-2011 Aspergillus_oryzae_RIB40_DNA,_SC001. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2UP86_ASPOR.gb Aspergillus 83766426 Nature_438_(7071),_1157-1161_(2005) fungi AP007154 NA NA green_and_blue_molds sac_fungi 16372010 145 NA genomic_DNA NA RIB_40 NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_Aspergillus_oryzae NA AP007154.1 ATGGCGGGTGGAATGGCCTCTCAAGGCATCTCTGCCAAGCGCGCAGAGCTTGCTGGAGGCAGAGTCGGATGGCGCGGGCTGGTCAGCAGCAAGAAAGCGTTTGGTATTGCGCTGTTCGCCTCGCTGGGTGGTTTGGTCTACGGAT > 117 AO090308000004 unnamed_protein_product;_predicted_transporter_(major_facilitator_superfamily) NA BAE56554.1 NA MGAGRGSPTVAGGQAIAYGPTGYKGIIKEPRIFGLACFASIGGFLFGYDQGVISGVLVMNSFVSHCLVHLISYHIKRLQSCVNTCLVSIMTLGAMCGAFANGPISDSLSRRWSILCANIVFLIGSVIQCAAENVAMLFVGRFVFGCAVGMLAMVVPLYLSELATPNNRGALVALQQLSITLGIMSSFWINYGTQYIGVRLLGESSFALQCLPSAILAIGTFFLPYSPRREEEAKQVLVRLRRLTATDYRLTLEFLEVKAARVFDEESRLAKYGDNSSRFQIAWNQYKELFTVPHLRRRTTIACLLQILQQFTGINAVIYYAPQFFEAIGLRGNSVNLLATGVVGIVFFICTIPAVMYLDQWGRRKTLILGSIGMSIAELIVATLYAVHPAAGWAACVFVWVYIGTFAFSIACVNWVMPSEMFPPATRGKAVGVAIAANYLSNFIVALITPWMLQSITFGTFYFFLVFSITLGVWTYFCVPETNGVPIEEMDTLFGGNEGEADLQRIASIRARLGFETSEDRKMVLEETKHDSVEHCERVD bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 AP007152 7837..8298 Machida,M.,_Asai,K.,_Sano,M.,_Tanaka,T.,_Kumagai,T.,_Terai,G.,_Kusumoto,K.,_Arima,T.,_Akita,O.,_Kashiwagi,Y.,_Abe,K.,_Gomi,K.,_Horiuchi,H.,_Kitamoto,K.,_Kobayashi,T.,_Takeuchi,M.,_Denning,D.W.,_Galagan,J.E.,_Nierman,W.C.,_Yu,J.,_Archer,D.B.,_Bennett,J.W.,_Bhatnagar,D.,_Cleveland,T.E.,_Fedorova,N.D.,_Gotoh,O.,_Horikawa,H.,_Hosoyama,A.,_Ichinomiya,M.,_Igarashi,R.,_Iwashita,K.,_Juvvadi,P.R.,_Kato,M.,_Kato,Y.,_Kin,T.,_Kokubun,A.,_Maeda,H.,_Maeyama,N.,_Maruyama,J.,_Nagasaki,H.,_Nakajima,T.,_Oda,K.,_Okada,K.,_Paulsen,I.,_Sakamoto,K.,_Sawano,T.,_Takahashi,M.,_Takase,K.,_Terabayashi,Y.,_Wortman,J.R.,_Yamada,O.,_Yamagata,Y.,_Anazawa,H.,_Hata,Y.,_Koide,Y.,_Komori,T.,_Koyama,Y.,_Minetoki,T.,_Suharnan,S.,_Tanaka,A.,_Isono,K.,_Kuhara,S.,_Ogasawara,N._and_Kikuchi,H. NA 0:>462 URL:http://www.bio.nite.go.jp/dogan/Top. NA 04-JUN-2011 Aspergillus_oryzae_RIB40_DNA,_SC308. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2UPG1_ASPOR.gb Aspergillus 83766409 Nature_438_(7071),_1157-1161_(2005) fungi AP007152 NA NA green_and_blue_molds sac_fungi 16372010 462 NA genomic_DNA NA RIB_40 NA Eurotium_oryzae NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_Aspergillus_oryzae NA AP007152.1 CTAGTCTACGCGTTCGCAATGTTCTACACTGTCGTGTTTGGTTTCCTCCAGCACCATCTTTCTGTCTTCCGAAGTTTCGAATCCTAGCCTCGCCCTAATACTCGCAATCCGCTGTAGATCCGCTTCACCCTCATTGCCACCAAACAATGTATCCATTTCCTCAATGGGAACACCATTCGTCTCGGGAACACAGAAGTAAGTCCATACTCCGAGCGTGATAGAAAACACCAAGAAGAAGTAGAACGTGCCGAAAGTGATAGATTGGAGCATCCACGGTGTGATCAGCGCCACGATGAAATTTGAGAGATAGTTGGCGGCAATCGCCACTCCAACAGCTTTACCGCGCGTCGCCGGGGGGAACATTTCCGATGGCATCACCCAGTTCACACAGGCAATGCTGAACGCAAATGTTCCGATATAGACCCAGACAAAGACACAAGCGGCCCAGCCGGCAGCTGGGTG > 118 AOR_1_1892174 NA MFS_quinate_transporter XP_001818062.1 NA MVDWSRWKTHPYYALVIFIIACGSIPKGYDEGGFSASVKLESFKEDFNLISSNWTHDETGLANRSANITSFNVLGAAFGALFALDLNDRFGRLNSWRLACLVWASGLFIQVFSSGIYGLLLFARIWSGLGAGALTVTTPLYLSEIAPARTRGLVVSCYMVILLAVLAMGFFINYGANQHMAPTRTQYRLVQAIPLIPVGLAMMASYIVPETPRYLVSKQKHDEGRAVLARLRGKDINDPELEAEFVLIDSQVRAKASDLATVTPWTAFKETQTNPNYRQRFWLLITMHTIAQWTGGNGITYYISTIFEYAGVTGNSTSLISSGAYGIVKLVFTMAFTWGLIDLFGRRRCALAGLSLQLAAHIYMGAYMGLQPGSSDNKSASDAAIASVFVYAVGWSVGLCTIPYLYGTEIFPTRIRNVSYAVSMSLHWFFQFAVVRVTPNMFASLNVWGAYLFWAIICTLGLVILGIWMPETKGVPIERMGDLFDTPWYLRWRARPKSDDSLETAPSVSSSTGAKQPEYKNTSL bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 XM_001818010 65..1639 Sawano,T.,_Tanaka,T.,_Machida,M._and_Yamada,O. NA 0:1575 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884661).On_Jan_7,_2011_this_sequence_version_replaced_gi:169767181.Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_oryzae_RIB40_MFS_quinate_transporter,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2UQV5_ASPOR.gb Aspergillus 317140230 Submitted_(03-JUN-2004)_Contact:Toshihiko_Sawano_National_Institute_of_Technology_and_Evaluation,_Genome_Analysis_Center,_Department_Of_Biotechnology;_2-49-10_Nishihara,_Shibuya-ku,_Tokyo_151-0066,_Japan fungi XM_001818010 NA NA green_and_blue_molds sac_fungi NA 1575 NA mRNA NA NA NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001818010.2 ATGGTAGACTGGTCCCGGTGGAAGACCCACCCCTATTATGCTCTTGTTATCTTCATTATTGCTTGTGGGAGTATCCCCAAAGGTTATGACGAAGGTGGCTTCAGCGCTAGCGTGAAATTGGAATCTTTCAAAGAAGACTTCAACCTCATTTCATCCAATTGGACCCACGATGAGACAGGGCTTGCCAACCGCAGTGCCAATATCACCTCTTTCAATGTCTTGGGTGCTGCCTTCGGTGCACTCTTCGCCCTGGACCTGAATGATCGATTCGGCAGATTAAACTCATGGCGCTTGGCTTGTCTGGTATGGGCGTCGGGCCTGTTCATCCAGGTCTTCTCTTCGGGCATATATGGCCTCTTGCTGTTCGCGAGAATCTGGAGCGGTTTGGGAGCTGGAGCTCTGACCGTGACGACACCGCTATATTTGTCTGAAATCGCCCCCGCACGAACTAGAGGACTTGTGGTTAGCTGCTACATGGTCATCTTGTTGGCCGTTTTAGCTATGGGTTTCTTTATTAATTACGGCGCCAACCAACACATGGCCCCAACCCGGACACAGTACCGGCTGGTACAAGCTATCCCCCTAATCCCAGTCGGACTCGCCATGATGGCCTCCTACATTGTCCCAGAAACGCCCCGCTACCTAGTCTCCAAACAAAAACATGACGAAGGCCGCGCAGTACTCGCCCGCCTCCGCGGCAAAGACATCAACGACCCGGAACTTGAAGCCGAATTCGTCCTAATCGACTCACAAGTACGCGCCAAAGCTAGCGATCTTGCCACCGTCACCCCCTGGACAGCCTTCAAAGAAACGCAAACCAACCCCAACTACCGCCAGCGCTTCTGGCTCCTCATCACAATGCACACAATCGCCCAATGGACGGGCGGCAACGGCATCACCTACTACATCTCGACGATCTTCGAGTACGCCGGTGTAACAGGCAACTCGACCTCGCTGATCAGCTCCGGCGCCTACGGCATTGTCAAGCTGGTCTTCACGATGGCCTTCACATGGGGACTTATCGACCTGTTCGGCCGCCGCCGTTGCGCCTTGGCGGGTCTCAGTCTCCAGCTAGCGGCCCACATTTACATGGGCGCCTATATGGGTCTGCAACCCGGCTCATCCGACAACAAATCCGCGTCCGACGCCGCCATCGCCTCTGTCTTCGTTTACGCCGTCGGCTGGTCCGTCGGCCTCTGTACAATCCCTTACCTCTACGGAACGGAGATCTTCCCTACCCGTATCCGGAACGTGAGTTATGCGGTCAGTATGTCGCTGCACTGGTTCTTCCAGTTTGCCGTCGTCCGCGTCACGCCTAATATGTTCGCCTCGTTGAATGTGTGGGGCGCCTATCTCTTCTGGGCTATCATTTGTACCCTTGGTTTGGTTATCTTGGGTATCTGGATGCCTGAGACTAAGGGTGTGCCGATCGAGCGCATGGGTGATCTTTTCGATACCCCGTGGTACCTGCGTTGGCGTGCCCGGCCTAAGTCTGATGACTCCCTTGAAACGGCTCCCAGTGTCTCTTCTAGTACTGGCGCTAAGCAGCCGGAGTACAAGAATACGTCCTTGTAA > 119 AOR_1_1486174 NA MFS_sugar_transporter XP_001817862.1 NA MGLPRKLPPYVVASMLCSCGGLLFGMDTGIIGPVTTMDSYVSQFGSQSATVHGLIVSSILIPAAVSSFFAGFLADKLGRSKGISIGALIFALGAALEAAAVHIAMFIVGRCVEGIGEGLYLGTLVVYICEISPTSVRGVLTTGPQLLITLGLVVGFFTCYGTARIESSFSWRTPFLILACLAVTFSVVSWLWLPPSPRWLRIHGRETEATAAWDRLGVTHAEREKMEVEEDRETNMQRRAAPETGNASTVERIASGPRPQIQSVKDKLFDIFSKDVRTRTALAVFLMGMQQLSGIDGVLYYAPLLFQQAGLASTDASFFASGVSALVIFGVTIPALIWADRWGRRHSTIYGGIGLSITMFLMGALYAGNAVHSSTGAGRWVVIVSIYIFAVIYSLSWAVGIKIYAAEIQPQRTRASATSLAHGSNWTANFLVALTTPILLSRSSFGAYFLFGGCTLITALICAIFMPETKGRSLDEIEEAFKSKSLGSQSFVKIIRPITRQTS bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 XM_001817810 NA Sawano,T.,_Tanaka,T.,_Machida,M._and_Yamada,O. NA 0:1512 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884661).Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_oryzae_RIB40_MFS_sugar_transporter,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2URF5_ASPOR.gb Aspergillus 169766781 Submitted_(03-JUN-2004)_Contact:Toshihiko_Sawano_National_Institute_of_Technology_and_Evaluation,_Genome_Analysis_Center,_Department_Of_Biotechnology;_2-49-10_Nishihara,_Shibuya-ku,_Tokyo_151-0066,_Japan fungi XM_001817810 NA NA green_and_blue_molds sac_fungi NA 1512 NA mRNA NA NA NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001817810.1 ATGGGCCTGCCTCGTAAGCTTCCACCCTATGTGGTCGCTAGTATGCTGTGTTCCTGCGGCGGGCTGTTATTTGGGATGGACACTGGCATTATTGGACCTGTGACTACTATGGACAGCTATGTTTCACAATTCGGTAGCCAATCTGCAACCGTGCATGGGTTGATAGTATCGTCTATTTTGATTCCAGCAGCTGTTTCGTCCTTTTTTGCTGGCTTTCTTGCAGATAAATTGGGTAGGTCAAAGGGTATCAGTATTGGTGCTTTGATATTTGCTCTCGGAGCTGCACTCGAGGCCGCCGCCGTCCATATCGCTATGTTTATCGTTGGAAGATGTGTTGAAGGAATAGGCGAGGGTCTCTACCTGGGCACGCTGGTCGTCTACATTTGCGAGATATCACCAACTAGCGTACGAGGAGTGCTGACTACTGGCCCTCAGTTGTTGATTACACTGGGATTGGTGGTTGGATTCTTTACCTGCTACGGGACTGCTCGTATCGAGTCTTCGTTCTCATGGCGGACACCATTTTTGATACTGGCGTGTCTAGCGGTCACATTTTCGGTGGTTTCATGGCTCTGGCTTCCCCCGTCACCGAGGTGGTTGAGGATCCATGGTCGTGAAACAGAAGCAACAGCAGCGTGGGATCGTCTGGGAGTCACCCATGCAGAACGTGAAAAGATGGAGGTGGAAGAGGATCGCGAGACTAACATGCAACGAAGAGCAGCCCCAGAGACTGGCAATGCATCTACCGTGGAACGGATTGCATCCGGCCCACGGCCCCAAATTCAGTCCGTTAAAGACAAACTTTTCGATATCTTTTCAAAAGATGTCCGTACACGAACAGCACTTGCCGTATTCTTAATGGGAATGCAGCAACTTAGTGGAATTGATGGCGTACTCTACTACGCTCCTCTACTTTTTCAACAGGCTGGACTTGCCTCCACGGATGCCAGCTTTTTTGCTTCAGGTGTCTCTGCTCTTGTTATCTTTGGTGTAACAATCCCTGCCCTTATATGGGCTGACAGGTGGGGTCGCCGGCACAGCACTATATATGGTGGTATTGGACTTAGCATAACAATGTTCTTGATGGGAGCCTTGTACGCAGGAAATGCTGTGCATAGCTCAACCGGCGCAGGCAGATGGGTTGTAATTGTTTCCATTTACATTTTCGCAGTCATTTACTCCCTTAGCTGGGCAGTTGGAATCAAGATTTACGCCGCGGAAATCCAACCGCAACGAACGCGAGCCTCAGCAACGAGCTTAGCACATGGAAGCAACTGGACGGCTAACTTCCTCGTGGCTCTTACGACCCCCATCCTGCTGTCTCGCAGTAGCTTTGGTGCATACTTCCTCTTCGGGGGATGCACACTGATAACTGCTCTGATCTGTGCAATCTTCATGCCAGAAACTAAGGGCAGGTCCCTGGATGAGATTGAGGAGGCCTTCAAATCCAAGTCCCTAGGATCACAGTCCTTTGTCAAAATCATCCGCCCAATTACCCGACAAACTTCATGA > 120 AO090005000743 unnamed_protein_product;_predicted_transporter_(major_facilitator_superfamily) NA BAE55772.1 NA MAENKSEDCTMAPPEPEHLESAGPSNEKVQGDPLTLAEVIERNRPDPWGSGYRKLYLMSALVFLCSTMNGYDTSLMGSINALPNYTEYYNLPTKGSIGQMAGALFIWMADWRGRRTHIFIGCLGVCVATVITSTAKKLSVFIGGRFLLSFFATCAHTASPLLLVELAPPQYRGSVAGMYNTLYYLGSILATSSVYGAHLHLAHRGHLDWRLPLWLQMVCPGLVCLGIWFVPESPRWLIAKDRHEEAQAFIVKYHANGDASHPIVVLEMNEMTNNLQEEGITHWRNFFDLSVLVKSRSRRYRLMLNLVFSWFGQFSGNNVISYYLPTLLKNVGVTNTDTQLLLNIIYALTGWIAATIGTRFHDIVGRRKMFLGSTAGMVICLAVTAATAAVFVHSSSTIASSASIAFIYIFGVVFAFAFTSMQPIYPGEVMSNDMRAKGMGTFKLTAGAAGFINTFAAPVALADIGYWFYVFFVFWDCFEFAFIYFFFVETKGRTLEELEEVFEAPNPRKASLKVPSRPRRVENR bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 AP007151 1987705..1987912 Machida,M.,_Asai,K.,_Sano,M.,_Tanaka,T.,_Kumagai,T.,_Terai,G.,_Kusumoto,K.,_Arima,T.,_Akita,O.,_Kashiwagi,Y.,_Abe,K.,_Gomi,K.,_Horiuchi,H.,_Kitamoto,K.,_Kobayashi,T.,_Takeuchi,M.,_Denning,D.W.,_Galagan,J.E.,_Nierman,W.C.,_Yu,J.,_Archer,D.B.,_Bennett,J.W.,_Bhatnagar,D.,_Cleveland,T.E.,_Fedorova,N.D.,_Gotoh,O.,_Horikawa,H.,_Hosoyama,A.,_Ichinomiya,M.,_Igarashi,R.,_Iwashita,K.,_Juvvadi,P.R.,_Kato,M.,_Kato,Y.,_Kin,T.,_Kokubun,A.,_Maeda,H.,_Maeyama,N.,_Maruyama,J.,_Nagasaki,H.,_Nakajima,T.,_Oda,K.,_Okada,K.,_Paulsen,I.,_Sakamoto,K.,_Sawano,T.,_Takahashi,M.,_Takase,K.,_Terabayashi,Y.,_Wortman,J.R.,_Yamada,O.,_Yamagata,Y.,_Anazawa,H.,_Hata,Y.,_Koide,Y.,_Komori,T.,_Koyama,Y.,_Minetoki,T.,_Suharnan,S.,_Tanaka,A.,_Isono,K.,_Kuhara,S.,_Ogasawara,N._and_Kikuchi,H. NA 0:208 URL:http://www.bio.nite.go.jp/dogan/Top. NA 04-JUN-2011 Aspergillus_oryzae_RIB40_DNA,_SC005. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2URP3_ASPOR.gb Aspergillus 83764984 Nature_438_(7071),_1157-1161_(2005) fungi AP007151 NA NA green_and_blue_molds sac_fungi 16372010 208 NA genomic_DNA NA RIB_40 NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genome_sequencing_and_analysis_of_Aspergillus_oryzae NA AP007151.1 ATGGCTGAGAACAAAAGCGAGGACTGTACTATGGCGCCACCAGAGCCTGAGCATCTTGAGTCAGCTGGCCCGTCAAATGAGAAAGTTCAAGGAGATCCCCTTACCCTGGCAGAAGTTATTGAAAGAAACCGACCCGATCCATGGGGCTCGGGGTATAGAAAATTATATCTCATGTCCGCTTTAGTTTTCCTGTGTTCTACCATGAATG > 121 AOR_1_344174 NA sugar_transporter XP_001817290.1 NA MADEIPHHVNDGRNSERNMEAQSAFASTLVVDVEKSLHSKGADPSKCSTSSNGISVSTPTNQAGSNAVYAAKAQLLNQALVDMKMGRYQWVLFIITSVGWFLDSFWIMSFVVIAPSASNEAQFFFPGDKSSYLFVSLAVGLTVGATAWPWMSDILGRRWIFTSTIVLMGMGGLVGAGMPSFTGLCVVGFVVGFAVAGNQLVDAIILIESLPASHQFLVTVQGAFWGLGQLVSAAVGWAFIAGYTCGTGLDAISTSQALSTHSSRAEGSTQSSQSSTSCHYVSNKGWRYLWWTFGCITLFLYLCRFVFPFRETPKYLLSKRRDAEAAQLVNNIATYSKRGTWLSETSFARVDSTIDATESRRTPRLRSLIFALQPTGLPILCLLWALTGLTFPLHKTSLTAYLASTHNIAPITATTVTTPYLYTHYLYTSLCAIPGPIIAGMLIQTKPFGRKRTGSAIALLTGLFMLLATLARSRNALLAFECVLSFLQFADLAVLTTYTVEIFAAPVRGFGVGVMGFFWGVFGLVAMIANTFAGDVVAGGAAVWFCGAVWVVMSGAWLTLNETRGFAAA bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 XM_001817238 NA Sawano,T.,_Tanaka,T.,_Machida,M._and_Yamada,O. NA 0:1710 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884661).Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_oryzae_RIB40_sugar_transporter,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2UT27_ASPOR.gb Aspergillus 169765637 Submitted_(03-JUN-2004)_Contact:Toshihiko_Sawano_National_Institute_of_Technology_and_Evaluation,_Genome_Analysis_Center,_Department_Of_Biotechnology;_2-49-10_Nishihara,_Shibuya-ku,_Tokyo_151-0066,_Japan fungi XM_001817238 NA NA green_and_blue_molds sac_fungi NA 1710 NA mRNA NA NA NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001817238.1 ATGGCCGACGAAATACCACATCATGTCAATGATGGTAGGAACTCCGAGAGGAATATGGAAGCACAAAGCGCATTTGCGTCTACTTTGGTAGTAGATGTCGAGAAGTCTCTGCATAGCAAAGGAGCCGATCCCAGCAAGTGTTCCACAAGTTCGAATGGCATATCTGTTAGCACTCCTACGAATCAGGCCGGCAGTAATGCAGTCTACGCTGCCAAAGCACAACTGCTGAATCAGGCGTTGGTGGACATGAAAATGGGCCGATACCAATGGGTACTCTTCATCATCACCAGTGTAGGATGGTTTCTTGACAGTTTCTGGATAATGTCATTCGTCGTTATTGCCCCGTCAGCCTCGAATGAAGCCCAGTTCTTCTTCCCCGGAGATAAATCGTCCTATCTGTTCGTCAGTCTGGCCGTCGGCCTAACGGTTGGCGCAACTGCCTGGCCATGGATGTCAGACATCCTGGGCCGTCGGTGGATCTTCACAAGCACAATCGTCCTTATGGGCATGGGAGGACTTGTCGGTGCCGGCATGCCTTCCTTTACCGGTCTCTGTGTCGTCGGCTTCGTGGTAGGCTTTGCTGTCGCAGGTAACCAGCTAGTCGATGCCATCATCCTGATAGAGTCGCTTCCGGCTTCCCATCAATTCTTGGTTACCGTACAAGGGGCGTTCTGGGGCTTGGGCCAGCTAGTCTCAGCCGCGGTTGGATGGGCGTTCATAGCAGGATATACCTGCGGCACCGGCCTCGACGCAATCAGCACATCACAAGCTCTATCAACCCACTCCTCCCGCGCCGAAGGATCAACACAATCAAGCCAGAGCAGCACATCCTGCCATTACGTTTCCAACAAAGGCTGGCGATACCTATGGTGGACATTCGGTTGCATCACACTGTTCCTCTACCTCTGTCGCTTCGTATTTCCCTTCCGCGAGACACCCAAATACCTCCTCTCCAAGCGCCGCGACGCCGAAGCCGCCCAACTAGTCAACAACATAGCCACATATAGTAAACGCGGTACCTGGCTCAGCGAAACCTCCTTCGCAAGGGTCGACTCAACCATTGACGCCACCGAATCCCGTCGAACTCCACGTCTCCGCTCCCTTATCTTCGCCCTTCAGCCCACCGGCCTCCCCATTCTCTGTCTCCTCTGGGCCCTAACAGGCCTCACATTCCCCCTCCACAAAACCTCCCTCACAGCCTACCTCGCCTCAACCCACAACATCGCCCCCATAACCGCCACAACAGTAACAACCCCCTACCTCTACACCCACTACCTCTACACATCCCTCTGCGCAATCCCCGGCCCCATCATAGCAGGTATGCTCATCCAAACAAAACCCTTCGGCCGCAAACGCACCGGCTCCGCAATCGCCCTTCTCACCGGCTTATTCATGCTCCTTGCCACACTGGCTCGATCAAGAAACGCCCTCTTGGCTTTTGAATGCGTCCTTTCTTTCCTGCAATTTGCGGACTTGGCGGTTTTGACGACGTATACGGTTGAGATCTTTGCGGCGCCAGTTCGGGGCTTTGGGGTCGGTGTTATGGGGTTCTTTTGGGGAGTTTTTGGACTTGTGGCGATGATTGCGAATACTTTTGCTGGGGATGTTGTTGCGGGAGGTGCGGCGGTTTGGTTTTGTGGTGCTGTTTGGGTTGTTATGAGTGGTGCTTGGTTGACGTTGAATGAGACGAGGGGTTTTGCTGCTGCGTAG > 122 AOR_1_140174 NA glucose_transporter_rco-3 XP_001817192.1 NA MGFMLKKPDDATGSAAPAIVIGLFVAFGGVLFGYDTGTISGILAMPYWRKLFSTGYINPSDNYPDVTSSQSSMIVSLLSAGTFFGALGAAPIADYFGRRLAMIINTFVFCFGVILQTAATAIPLFVAGRFFAGLGVGLLSATIPLYQSETAPKWIRGTIVGAYQLAITIGLLLAAIVNNSTKGRDDTGSYRIPVAVQFAWAIILVVGMIVLPETPRFLIKKGKHEAAAKALSRLRRIDVNDPAIVEELAEIQANHEYELSVGNASYLSILRGSIGKRLATGCAVQGLQQLAGVNFIFYYGTTFFEHSGIKDGFIITLITNIVNVVSTFPGLYMVEKWGRRPLLLFGAVGMCVSQLIVAIVGTATTSDVANKVLIAFVCVYIFFFACSWGCTAWVVTGELFPLKARAKCLSITTATNWLLNWAIAYATPYMVNSGPGNANLQSKVFFIWGGFCFIAGIFVYTCIYETKGLTLEQVDELYAKIPVAWRSHEFVPSVSYADVRDVAAGKVSGNLADLEADAQMKRDMEHVEKA bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 XM_001817140 72..1664 Sawano,T.,_Tanaka,T.,_Machida,M._and_Yamada,O. NA 0:1593 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884661).On_Jan_7,_2011_this_sequence_version_replaced_gi:169765441.Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_oryzae_RIB40_glucose_transporter_rco-3,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2UTC5_ASPOR.gb Aspergillus 317138988 Submitted_(03-JUN-2004)_Contact:Toshihiko_Sawano_National_Institute_of_Technology_and_Evaluation,_Genome_Analysis_Center,_Department_Of_Biotechnology;_2-49-10_Nishihara,_Shibuya-ku,_Tokyo_151-0066,_Japan fungi XM_001817140 NA NA green_and_blue_molds sac_fungi NA 1593 NA mRNA NA NA NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001817140.2 ATGGGCTTCATGTTGAAGAAGCCGGATGATGCTACGGGCTCTGCTGCCCCTGCCATCGTTATTGGCTTGTTTGTTGCCTTTGGTGGTGTTTTGTTCGGTTATGATACCGGCACCATCAGTGGCATCCTTGCCATGCCTTACTGGCGCAAGCTGTTCTCCACGGGCTATATCAACCCGTCAGACAACTATCCCGATGTGACCTCCTCTCAATCCTCCATGATCGTGTCTCTCCTGTCTGCAGGAACTTTCTTCGGTGCCCTTGGTGCAGCACCCATTGCTGATTACTTCGGTCGTCGGCTTGCTATGATCATCAACACATTTGTTTTCTGCTTTGGTGTCATCCTTCAGACCGCTGCTACTGCTATCCCGTTATTTGTTGCGGGAAGATTCTTTGCAGGCCTAGGTGTTGGATTGCTCTCTGCAACAATCCCGCTGTACCAGTCCGAAACCGCTCCTAAGTGGATCCGTGGTACCATCGTTGGTGCCTACCAGCTGGCTATCACCATTGGATTGCTCCTTGCTGCCATCGTGAACAATTCCACTAAGGGCCGTGACGATACTGGTTCCTACCGTATCCCTGTCGCTGTTCAGTTTGCCTGGGCTATTATCCTGGTTGTTGGCATGATCGTACTCCCTGAGACGCCTCGCTTCTTGATCAAGAAGGGCAAGCATGAAGCTGCTGCCAAGGCTCTCTCACGCCTTCGCCGCATCGATGTCAATGATCCCGCCATTGTGGAGGAGCTGGCTGAGATCCAGGCCAACCATGAATATGAACTCAGTGTGGGCAATGCCAGCTACCTCTCCATTCTTCGTGGGAGTATCGGCAAGCGACTGGCCACTGGCTGTGCCGTTCAGGGTCTGCAGCAGCTGGCTGGAGTCAACTTCATCTTCTACTACGGAACTACTTTCTTCGAACACTCCGGTATCAAGGACGGATTTATTATTACTTTGATCACCAACATTGTTAATGTCGTCTCAACCTTCCCTGGTCTCTATATGGTCGAGAAATGGGGTCGTCGTCCTCTTCTCTTGTTCGGTGCTGTCGGCATGTGTGTCTCTCAACTCATCGTTGCCATTGTTGGCACCGCCACCACTTCCGACGTCGCAAACAAGGTGCTGATCGCCTTCGTCTGTGTCTACATCTTCTTCTTCGCTTGCTCATGGGGTTGCACCGCGTGGGTGGTGACCGGTGAGCTCTTCCCTCTCAAGGCTCGTGCCAAGTGTCTCTCAATCACGACCGCCACCAACTGGCTCCTCAACTGGGCCATCGCATATGCTACCCCTTATATGGTTAACTCCGGCCCGGGCAACGCCAACCTGCAGTCCAAGGTGTTCTTCATCTGGGGTGGATTCTGCTTCATTGCCGGTATTTTCGTCTACACCTGCATCTACGAGACCAAGGGTCTTACCTTGGAGCAGGTTGATGAGCTTTACGCTAAGATTCCTGTGGCCTGGCGCTCCCATGAATTTGTTCCATCCGTCAGCTATGCTGACGTTCGTGACGTTGCCGCCGGCAAAGTGTCTGGCAACCTCGCTGATCTAGAGGCCGACGCCCAGATGAAGCGTGATATGGAGCATGTTGAGAAGGCCTAG > 123 AOR_1_446184 NA sugar_transporter XP_001816757.1 NA MGRRYLGLQGNALQIAIGVIAGMDFLLFGYDQGVTGGLLTLQSFIKYFPTIATSGAYYDSLTQAEQSTQSTRQGIVVAAYNLGCFAGSIPTIWVGNWLGRRKTIFLGSFIMVIGALLQCTAYQLPQLIVGRLVTGFGNGMNTSTVPTWQSECCKSNHRGKLVMIEGAMITCGITISYWIDFGLLFADPNEVAWRFPLAFQIFFAAIILAFVMFLPESPRWLVLKGREDEAKEVLGALLGDGTDPTFLQTEFTAIKATVLEMAKGSFKDMFTMDEDRHFHRTVLAYVNQMFQQISGINLITYYIPVVLEEQMGMTLINSRLIAACNGTEYFIASWIAVFTIEKFGRRTLMLFGAAGMSISMIILAITASLKTSEANIACIVFLFVFNTFFAIGWLGMTWLYPAEIVPLKIRAPANALATSSNWIFNFLVVMITPVAFDNIDYQTYIIFAVINAFIVPVVFFFYPETTRRSLEEMDRIFRKTKSIFSVVRIANEEPHMYGKHGELLHTLDDVEDEAVRRASVLSHAHKELEKDSSENDSTNKA bitunicate_ascomycetes Aspergillus_oryzae_RIB40 Aspergillus_oryzae_RIB40 XM_001816705 186..1811 Sawano,T.,_Tanaka,T.,_Machida,M._and_Yamada,O. NA 0:1626 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884660).On_Jan_7,_2011_this_sequence_version_replaced_gi:169764570.Derived_by_automatic_computational_analysis_using_gene_predictionmethod:_Multi-Genome_Gnomon. NA 03-MAR-2011 Aspergillus_oryzae_RIB40_sugar_transporter,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_oryzae_Q2UUL0_ASPOR.gb Aspergillus 317138216 Submitted_(03-JUN-2004)_Contact:Toshihiko_Sawano_National_Institute_of_Technology_and_Evaluation,_Genome_Analysis_Center,_Department_Of_Biotechnology;_2-49-10_Nishihara,_Shibuya-ku,_Tokyo_151-0066,_Japan fungi XM_001816705 NA NA green_and_blue_molds sac_fungi NA 1626 NA mRNA NA NA NA Eurotium_oryzae NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 510516 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Direct_Submission NA XM_001816705.2 ATGGGTCGCAGGTATTTGGGCCTTCAGGGCAACGCCCTGCAAATCGCCATCGGTGTTATTGCTGGTATGGACTTTCTACTATTCGGTTATGATCAGGGTGTCACCGGTGGTCTTTTGACCCTTCAGTCCTTTATCAAATATTTCCCCACCATTGCGACCAGTGGTGCGTACTATGATAGTCTCACCCAGGCCGAACAGAGTACCCAATCTACTCGCCAAGGTATTGTTGTCGCTGCGTACAACTTAGGATGTTTTGCAGGATCTATCCCGACAATCTGGGTTGGAAATTGGCTTGGTCGACGTAAAACTATCTTTCTCGGTTCTTTCATCATGGTCATTGGAGCTCTACTGCAGTGTACCGCGTACCAGCTGCCCCAACTGATCGTTGGACGTCTGGTGACTGGATTCGGAAACGGCATGAACACATCCACCGTGCCCACTTGGCAGTCTGAGTGCTGCAAATCCAATCATCGTGGTAAACTGGTCATGATCGAGGGTGCCATGATCACTTGTGGTATTACTATTAGTTACTGGATCGACTTTGGTTTGCTCTTTGCCGACCCCAATGAGGTCGCCTGGCGTTTCCCACTGGCTTTCCAGATCTTCTTTGCCGCTATCATCCTGGCTTTTGTCATGTTCCTTCCCGAATCTCCCCGCTGGCTTGTGCTTAAGGGCAGAGAGGATGAAGCGAAAGAAGTGCTGGGGGCTTTGTTAGGCGACGGAACCGATCCCACATTCTTGCAGACTGAGTTCACGGCTATCAAGGCGACCGTTTTGGAGATGGCTAAGGGTTCGTTCAAGGATATGTTCACCATGGATGAAGACCGTCATTTCCACCGCACCGTGTTGGCCTATGTCAACCAGATGTTCCAGCAGATTTCCGGCATCAATCTGATCACGTACTATATCCCGGTTGTGTTGGAAGAGCAGATGGGTATGACCCTAATCAACTCTCGACTGATTGCGGCATGCAACGGAACCGAGTACTTCATCGCCTCTTGGATTGCGGTGTTCACGATCGAAAAATTTGGTCGCCGGACGCTGATGCTTTTCGGTGCCGCGGGTATGTCAATCTCGATGATTATCCTCGCCATCACAGCTAGTCTCAAAACCTCGGAAGCCAACATCGCCTGCATTGTCTTCCTATTTGTGTTCAATACGTTCTTTGCTATCGGCTGGCTGGGAATGACCTGGCTGTATCCCGCCGAAATTGTGCCTTTGAAGATTCGTGCTCCAGCCAATGCCCTAGCGACATCGTCGAACTGGATCTTCAACTTCCTCGTGGTTATGATCACCCCTGTCGCTTTCGATAACATTGACTACCAAACCTACATTATTTTCGCCGTTATTAACGCATTCATCGTTCCGGTTGTATTCTTCTTCTATCCGGAGACAACCCGTCGGTCGCTGGAAGAAATGGACCGCATCTTCCGAAAGACGAAGAGCATCTTCTCGGTCGTGCGTATTGCGAATGAGGAGCCTCACATGTATGGCAAGCATGGTGAGCTCCTGCATACGCTGGATGATGTTGAGGATGAGGCTGTGCGTCGGGCTAGTGTGCTGAGCCACGCTCACAAGGAGTTGGAAAAAGACAGCTCTGAAAACGACAGCACGAACAAGGCATGA > 124 ATEG_09633 NA hypothetical_protein XP_001218255.1 NA MGLNPYLGLRGNALLRAAVMLVVCPTFVCYGYNMSVAGGLLTLETFNLQFPQMDTINTTGAQNHYNSQIQGTVIALYTVGGIFGALSCVYLGDAWGRRKVIFITNAITAVGAILMASSFHFAQFIVARLVLGLGIGGYVATVPVWQSEISPAHKRGSNVVTDGIFVGIGVTGALWIDLGFYFIKGNSVSWRFPLAFQLVLTLTAMVFITTLPESPRWLVKMGRVDEARGVLAALQDEDEHSDSVMTAIQDIETSLAKAGSGTWRDMFTMGEARLFHRAYLAATGQMFQQMCGVNLITYYATTIFQQYLGLDPVKSRILAAAMGLTQPFGGFLAFFTIDRLGRRPLLLWSAGVMAISMAILAGTTSTQNNTGALVVAVIFLYIFQFTFTVGYSGLTFLYAAEIAPLQVRAAVNAVSTATVWAFNFLLAQVTPVGFATINNRYYIIFAVINAAMIPAVFFFFPETKGRSLEEIDEIFAQSKSIFDPPKVARRMAKMQVGQVFLEARDTSSSDESTGDKAVKA bitunicate_ascomycetes Aspergillus_terreus_NIH2624 Aspergillus_terreus_NIH2624 XM_001218254 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Henn,M.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Yandava,C.,_Denning,D.,_Nierman,B.,_Milne,T._and_Madden,K. NA 0:1563 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165938).COMPLETENESS:_incomplete_on_both_ends. NA 31-MAR-2008 Aspergillus_terreus_NIH2624_predicted_protein_(ATEG_09633)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_terreus_Q0C9K1_ASPTN.gb Aspergillus 115442895 Unpublished fungi XM_001218254 NA NA green_and_blue_molds sac_fungi NA 1563 NA mRNA NA NIH2624 NA Aspergillus_terreus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 341663 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Annotation_of_the_Aspergillus_terreus_NIH2624_genome NA XM_001218254.1 ATGGGCCTGAATCCGTACCTGGGCCTGCGTGGCAATGCCCTCCTCCGTGCGGCCGTCATGTTGGTCGTCTGTCCGACCTTTGTCTGCTATGGCTACAACATGAGTGTGGCCGGCGGTCTGTTGACCCTCGAGACCTTTAACCTGCAATTTCCCCAGATGGACACCATCAACACGACTGGGGCACAGAACCACTACAACTCTCAGATTCAGGGCACTGTGATCGCTCTCTACACCGTCGGCGGTATCTTTGGGGCCCTCTCGTGCGTCTACCTCGGCGATGCCTGGGGCCGCCGCAAAGTCATCTTCATCACCAATGCCATCACCGCGGTCGGGGCCATCCTCATGGCGTCGTCGTTCCACTTTGCGCAGTTCATCGTCGCGAGACTGGTTCTCGGGCTGGGCATCGGCGGGTACGTGGCCACGGTGCCGGTGTGGCAGTCGGAGATCTCGCCCGCACACAAGCGCGGCTCCAACGTGGTCACGGACGGCATCTTCGTGGGCATCGGCGTGACGGGGGCGCTGTGGATCGACCTGGGCTTCTACTTCATCAAGGGCAACTCGGTGTCGTGGCGGTTCCCGCTGGCGTTCCAGCTGGTGCTCACGCTGACGGCCATGGTCTTCATCACGACGCTGCCCGAGTCGCCGCGCTGGCTCGTCAAGATGGGCCGCGTCGACGAGGCGCGCGGCGTGCTCGCTGCGCTGCAGGACGAGGACGAGCACTCGGACTCGGTGATGACCGCCATCCAGGATATCGAGACCTCGCTCGCCAAGGCCGGCTCCGGCACCTGGCGCGACATGTTCACCATGGGCGAGGCCCGCCTCTTCCACCGCGCCTACCTCGCCGCCACCGGCCAGATGTTCCAGCAGATGTGCGGCGTCAACCTCATCACCTACTACGCCACCACCATCTTCCAACAGTACCTGGGGCTGGACCCGGTGAAGTCGCGCATCCTCGCCGCCGCCATGGGCCTGACGCAGCCGTTTGGCGGCTTCCTCGCGTTTTTTACGATTGACCGCCTCGGCCGCCGCCCGCTGCTGCTCTGGAGCGCCGGCGTCATGGCCATCTCCATGGCCATCCTCGCCGGCACCACCTCGACCCAGAACAACACCGGCGCGCTCGTCGTCGCCGTCATCTTCCTCTACATCTTCCAGTTCACCTTCACCGTCGGCTACTCGGGCCTCACCTTCCTGTACGCCGCCGAGATCGCCCCGCTGCAGGTGCGCGCCGCCGTCAACGCCGTCTCCACCGCCACCGTCTGGGCCTTCAACTTCCTCCTCGCCCAGGTCACCCCCGTCGGCTTCGCCACCATCAACAACCGCTACTACATCATCTTCGCCGTCATCAACGCCGCCATGATCCCCGCCGTCTTCTTCTTCTTCCCCGAGACCAAGGGCCGCTCGCTCGAGGAGATCGACGAGATCTTCGCCCAGTCCAAGTCCATCTTCGACCCACCCAAGGTCGCCCGCCGCATGGCCAAGATGCAGGTAGGTCAGGTGTTCCTCGAGGCCCGCGATACCTCCTCGAGCGATGAGTCGACCGGCGACAAAGCTGTGAAGGCGTAG > 125 ATEG_09256 NA hypothetical_protein XP_001217878.1 NA MGTFGSQTSTYNRLVTVFVAIGSLTYGYCASIISSTIGQPGWYTYFNLPAEGEPGYAAITTPAISTANGVFSAGGAVGALFIMWACDYFGRKVNIQLGAFFSLFGGALQGGANSLKMFQAGRFVCGLGIGILVTVCPMYLSEMSSAFRRGWLVGHHAIFLVFGYMLAGWVGYACYFAQDKLGTFGWRFPLCLQCLPPLVLLAGSPWLPRSPRWLISKGKHEEAKRVLNRLRQSPDDPENIVAKEEYYQTAEQIRLEAQRLSEYGTVWNAVLKKKSYRKRMAIGFLTQWGAEFGGPLIINNYAVLLYSNLGMEGGMPLLLSAVWLTTAGVIYNPLGAWLHDKVNSRRGMFITGFIGIVVTTSCLAAMTAEYAGTTNRVGNGFGIFFIYLYLAFQGTCCDTTMYIYVSEIFPTEIRPIGMGFSLFGQFAATIILLQTAPMGFGNVGWKFYLVIICWSAFFIPVIYFFFPETARLTLEEIAKKFGEEVAVHITDAPDEEKVRIERNLALKYDDGPGQAQAPADNSHGESSSPDLSADGLQEAPKTG bitunicate_ascomycetes Aspergillus_terreus_NIH2624 Aspergillus_terreus_NIH2624 XM_001217877 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Henn,M.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Yandava,C.,_Denning,D.,_Nierman,B.,_Milne,T._and_Madden,K. NA 0:1632 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165937).COMPLETENESS:_incomplete_on_both_ends. NA 31-MAR-2008 Aspergillus_terreus_NIH2624_conserved_hypothetical_protein_(ATEG_09256)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_terreus_Q0CAM8_ASPTN.gb Aspergillus 115437703 Unpublished fungi XM_001217877 NA NA green_and_blue_molds sac_fungi NA 1632 NA mRNA NA NIH2624 NA Aspergillus_terreus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 341663 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Annotation_of_the_Aspergillus_terreus_NIH2624_genome NA XM_001217877.1 ATGGGGACGTTCGGGTCTCAAACTAGCACTTACAACAGGCTGGTCACCGTGTTTGTTGCGATTGGATCACTGACATACGGTTATTGCGCGTCGATCATCTCCAGCACGATCGGTCAACCCGGATGGTACACCTATTTCAATCTCCCTGCCGAGGGAGAACCAGGATATGCGGCAATCACCACCCCAGCCATCTCCACCGCCAACGGCGTTTTCAGCGCCGGCGGTGCCGTCGGGGCACTGTTCATAATGTGGGCGTGTGATTACTTCGGTCGAAAGGTCAACATCCAGCTGGGCGCATTTTTCTCCCTGTTCGGAGGTGCCCTTCAGGGCGGCGCCAACTCGCTAAAAATGTTCCAGGCTGGCCGCTTTGTCTGCGGTCTCGGCATCGGTATCCTTGTCACCGTCTGTCCGATGTACCTCTCGGAAATGTCGAGCGCCTTCCGTCGTGGCTGGCTGGTGGGCCATCATGCCATCTTCCTGGTCTTTGGATACATGCTTGCCGGGTGGGTCGGATATGCATGCTACTTCGCGCAGGATAAGCTGGGCACGTTCGGCTGGCGGTTCCCGCTGTGTCTGCAATGCCTGCCGCCGCTAGTGTTGCTCGCCGGGTCGCCATGGCTGCCGCGGTCTCCGCGATGGTTGATTTCTAAGGGGAAGCACGAGGAAGCAAAGCGGGTGCTTAACCGACTCCGGCAGTCCCCTGATGATCCGGAGAATATCGTCGCCAAGGAGGAATACTACCAGACGGCGGAGCAGATCCGTCTGGAGGCGCAGCGTCTCTCGGAGTATGGAACCGTCTGGAACGCGGTCCTCAAGAAGAAATCATACAGGAAGCGGATGGCGATCGGGTTCCTCACGCAATGGGGTGCGGAATTCGGTGGGCCGTTGATTATTAACAACTATGCCGTGCTTCTGTACTCGAACCTTGGCATGGAGGGCGGCATGCCGTTGCTGCTCAGCGCTGTGTGGTTGACCACTGCAGGTGTGATCTACAACCCGCTCGGTGCATGGCTGCACGACAAGGTCAATTCCCGACGAGGCATGTTTATCACCGGATTCATTGGCATCGTCGTCACCACGTCGTGTCTGGCCGCCATGACCGCGGAGTATGCAGGCACCACCAACCGCGTTGGCAACGGCTTTGGCATCTTTTTCATATATCTGTATCTGGCGTTCCAGGGAACCTGCTGTGACACCACCATGTACATCTATGTTTCAGAGATCTTCCCTACCGAGATCCGCCCCATTGGCATGGGCTTCTCGCTGTTTGGCCAATTTGCCGCTACGATTATCCTTCTACAAACCGCCCCAATGGGCTTCGGCAATGTCGGCTGGAAATTCTACCTGGTCATCATTTGCTGGTCGGCCTTTTTCATCCCAGTAATCTACTTCTTCTTCCCTGAGACCGCCCGCCTGACCCTGGAGGAGATTGCAAAGAAATTCGGCGAAGAGGTGGCTGTCCATATCACTGATGCCCCGGACGAGGAGAAGGTCCGTATTGAGCGGAACCTGGCCTTGAAGTACGATGATGGTCCTGGCCAGGCTCAGGCACCAGCTGATAATTCTCATGGAGAGAGTTCCAGTCCTGACCTGTCTGCGGATGGCCTCCAGGAAGCTCCTAAAACGGGCTAA > 126 ATEG_07114 NA hypothetical_protein XP_001209800.1 NA MVALLNAGCFFGALVPALCGHLFGRRHLLAISAFFLIVGGTIQTAAQPPSMSWMYGGRVIAGFGVGMVSTTVPNYVAECSPKQYRGLLMGFFEMFLVTGGVLAYWTTYGVSEHLAETSRQWRVPLSLQIIVACLILVGSFVIVESPRWLAKKDRWEEAERSLCYLRGAHPQDEDIVAELADIKAQLVRERAATEGREIAELLQKGNLRRLVCGVGVALFSIWTGHNGILYYGPAVFRQIGYTSQNAALLASGVFTIIKFVCTVLFLVAGVQLLKRTHLLTLGGLLMGVLLYALGAVLKVHPPAPGTAGSPPAQGMMACIYLYVAAYSFSWGPLSWIYIAEIFPIRIRDYGMAISTMVIWLMNFVVSKITPIAVLNIGWKTWMMYGTFNIAGCLFALSIPETKGVSLEDMDVLFGVVEKQHSQVEEGDEEARISKE bitunicate_ascomycetes Aspergillus_terreus_NIH2624 Aspergillus_terreus_NIH2624 XM_001209800 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Henn,M.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Yandava,C.,_Denning,D.,_Nierman,B.,_Milne,T._and_Madden,K. NA 0:1308 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165933).COMPLETENESS:_incomplete_on_both_ends. NA 31-MAR-2008 Aspergillus_terreus_NIH2624_predicted_protein_(ATEG_07114)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_terreus_Q0CGS8_ASPTN.gb Aspergillus 115386517 Unpublished fungi XM_001209800 NA NA green_and_blue_molds sac_fungi NA 1308 NA mRNA NA NIH2624 NA Aspergillus_terreus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 341663 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Annotation_of_the_Aspergillus_terreus_NIH2624_genome NA XM_001209800.1 ATGGTCGCCCTGCTGAATGCTGGATGCTTCTTTGGAGCGTTGGTGCCGGCGCTGTGCGGCCACCTCTTCGGCCGTCGCCATCTGCTTGCCATCAGTGCATTCTTTCTCATCGTCGGCGGCACGATCCAGACGGCAGCGCAGCCTCCGAGCATGTCGTGGATGTACGGGGGCCGGGTGATTGCCGGGTTCGGGGTGGGCATGGTGTCGACTACCGTGCCGAACTACGTGGCGGAGTGCTCGCCCAAGCAGTACCGCGGCCTGCTGATGGGGTTCTTCGAGATGTTTCTCGTTACTGGCGGCGTGCTGGCCTACTGGACGACCTACGGGGTGTCAGAGCACCTGGCCGAAACCAGTCGGCAGTGGCGGGTACCTCTGTCGCTTCAAATTATTGTGGCTTGTCTGATACTCGTTGGGTCGTTCGTAATTGTGGAGTCGCCTCGCTGGCTCGCGAAGAAGGACCGATGGGAGGAAGCAGAGCGGTCGTTGTGCTACTTGCGCGGTGCACACCCTCAGGATGAGGACATTGTCGCTGAGCTGGCTGACATCAAGGCCCAGCTGGTCCGCGAGCGTGCAGCAACCGAAGGACGAGAGATAGCAGAGTTACTGCAGAAAGGTAATCTGCGCCGTCTGGTGTGTGGAGTTGGCGTTGCGCTGTTTAGTATCTGGACGGGTCATAATGGCATTCTATACTACGGGCCGGCGGTGTTTCGACAGATCGGCTATACCAGTCAGAATGCGGCATTGCTGGCGTCTGGGGTCTTCACAATCATCAAGTTTGTGTGCACTGTGCTGTTCCTCGTTGCTGGGGTTCAGCTGCTGAAGCGGACGCATTTATTGACCCTTGGCGGTCTACTGATGGGTGTGCTGCTGTACGCACTCGGAGCGGTTTTGAAGGTGCATCCTCCTGCTCCCGGGACAGCTGGAAGTCCTCCTGCTCAAGGAATGATGGCATGCATCTATCTCTACGTGGCAGCGTACAGCTTCTCCTGGGGACCATTGAGTTGGATCTACATTGCAGAGATCTTCCCCATCCGCATCCGTGACTATGGAATGGCCATCTCCACGATGGTGATTTGGCTGATGAACTTTGTTGTCTCGAAAATCACCCCCATCGCTGTTCTGAATATTGGATGGAAAACGTGGATGATGTATGGCACATTCAACATCGCTGGCTGTCTCTTCGCCCTGTCGATACCAGAAACTAAAGGCGTCTCTCTTGAAGACATGGACGTCTTGTTCGGGGTGGTCGAAAAGCAGCACTCGCAAGTCGAGGAAGGAGATGAAGAGGCACGGATAAGCAAGGAGTAG > 127 ATEG_06453 NA hypothetical_protein XP_001215631.1 NA MQDTSRASYTPLGPHRDVFHVRVSEAVTFLTAYLPHTWTTWSLKQTKLIRPPTATGDPAPRQTDPWYVYKLAAFVSLGALLFGYDQGVMGMIVADQRWKDLMKPQNSWVTGAVVSMYDIGCFIGAMSTGILADWYGRERMLAIASAVFIIGAVLQAASYTIVQIIIGRIVLGYGVGGCAAGVPLYQSEIAPSTLRGRLIGIEQMVLCTGELIAFWLNYAFSYLPTNDWWRIPLAIQVLPAIVLGLGCWVWVPPSPRWLVAQNRPDCAREVLTRLHGADVAAAELAQIQDTMRLERHTAASWRGMFRRPILRLTLLGCGIQAFQQITGTNSILYYSPSLFQKGGITDSRTANLATGGIGIALFISSWIPIFFFDRLGRKRWLQLGTVGMTGAMIGIAVLQWHAGAHPGARGNYAIVIFPYLFYVFFNVSWGVAAWTYPSEIFPLSMRARGNALATAANWTMCYVVAQASPPLAEAIGWGLYVVYAGICVGALWFVTVALVETRNRSLEEMNRVFGLEGYFADSRCLIPKDPEDDEGE bitunicate_ascomycetes Aspergillus_terreus_NIH2624 Aspergillus_terreus_NIH2624 XM_001215631 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Henn,M.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Yandava,C.,_Denning,D.,_Nierman,B.,_Milne,T._and_Madden,K. NA 0:1611 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165932).COMPLETENESS:_incomplete_on_both_ends. NA 31-MAR-2008 Aspergillus_terreus_NIH2624_predicted_protein_(ATEG_06453)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_terreus_Q0CIN1_ASPTN.gb Aspergillus 115400084 Unpublished fungi XM_001215631 NA NA green_and_blue_molds sac_fungi NA 1611 NA mRNA NA NIH2624 NA Aspergillus_terreus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 341663 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Annotation_of_the_Aspergillus_terreus_NIH2624_genome NA XM_001215631.1 ATGCAGGACACCTCACGGGCGTCCTACACCCCTCTGGGCCCGCATAGGGACGTATTCCACGTGCGTGTCAGTGAAGCTGTCACATTTCTGACGGCCTACTTGCCCCATACCTGGACAACATGGTCCCTGAAACAGACAAAACTCATCCGCCCGCCGACAGCAACAGGGGACCCTGCGCCACGACAGACAGACCCCTGGTACGTGTACAAGCTGGCGGCGTTCGTCTCGCTGGGAGCGCTGCTATTCGGCTACGATCAGGGCGTGATGGGGATGATCGTGGCTGACCAGCGGTGGAAGGACTTGATGAAGCCGCAGAACTCGTGGGTAACCGGAGCCGTGGTCTCCATGTATGACATCGGCTGCTTCATTGGCGCAATGTCCACGGGCATTCTGGCGGATTGGTACGGCCGCGAGCGCATGCTGGCCATAGCCAGCGCGGTCTTCATCATCGGCGCCGTCCTGCAAGCCGCATCATACACCATCGTCCAGATCATCATCGGCCGTATCGTCCTCGGCTACGGCGTCGGAGGCTGCGCCGCCGGCGTCCCCCTCTACCAGTCCGAAATCGCCCCATCCACCCTGCGCGGCCGTCTCATCGGCATCGAGCAGATGGTCCTCTGCACCGGCGAGCTCATCGCCTTCTGGCTCAACTACGCCTTCTCATACCTGCCCACTAACGACTGGTGGCGCATCCCGCTCGCCATCCAGGTCCTCCCGGCCATCGTCCTGGGCCTCGGCTGCTGGGTCTGGGTGCCCCCGAGTCCGCGGTGGCTCGTCGCGCAGAACCGGCCGGACTGCGCGCGCGAGGTTCTCACCCGCCTGCACGGCGCGGACGTCGCCGCCGCCGAGCTGGCGCAGATCCAAGACACGATGCGGCTGGAGAGACACACCGCTGCATCGTGGAGGGGTATGTTCCGCCGGCCGATCCTGCGGCTGACCCTGCTGGGCTGCGGGATCCAGGCCTTCCAGCAGATCACCGGGACGAACTCCATCCTCTACTACTCTCCCTCCCTCTTCCAGAAAGGCGGCATCACAGACTCCCGCACCGCGAACCTCGCGACAGGCGGCATCGGGATCGCCCTCTTCATCAGCTCGTGGATCCCGATCTTCTTCTTCGACCGCCTCGGCCGCAAGCGCTGGCTGCAACTCGGCACGGTGGGGATGACGGGCGCGATGATCGGCATCGCCGTGCTGCAGTGGCACGCGGGCGCGCACCCCGGCGCGCGCGGCAACTACGCCATCGTCATCTTCCCGTATCTGTTCTACGTGTTCTTCAACGTCAGCTGGGGCGTCGCGGCGTGGACGTACCCGTCCGAGATCTTCCCGCTGTCGATGCGCGCCAGGGGCAATGCGCTCGCCACCGCCGCGAACTGGACCATGTGCTATGTCGTTGCGCAGGCGTCGCCGCCGCTGGCTGAGGCCATCGGATGGGGGCTGTATGTGGTGTATGCGGGGATCTGCGTGGGTGCGTTGTGGTTTGTGACGGTTGCGTTGGTGGAGACCAGGAATCGGTCATTGGAGGAGATGAATCGCGTGTTTGGGTTGGAGGGGTATTTTGCGGATTCGAGGTGTTTGATTCCGAAGGACCCTGAGGATGATGAGGGAGAGTAG > 128 ATEG_05514 NA hypothetical_protein XP_001214692.1 NA MAGGTSIWFSKEARSDPKEIFNRRLLYLLVSVSWAGCFYGFDTGNIGGILTLKSFENAFGLINVPQAEIDNRKGTIAAMLAGGASAGSILAAPTSDFIGRKWSVFLWGVVFLVGAAMQMDANYDVLIAGRFIGGMGVGASSMLTPQFLAENSPKSVRGSMTATYNLMILMALMLAFWVNYGVSLWSYPGVEHDHRQWRTAMGIQLIPGGLMCLMIPWVPETPRYLINHGKAEQGLNNICRLRKLPADHEYVQIEYQEIQAQVRYEQECYAGHSYWVVAKDIFTIKSNFRRFFLAIMLFLFHKFTGTDSLNYYAPEIFQLIGVHDDSSLLTTGVYGVVKFVVTIIYVAYLVDRVGRRLPLLIGATMQATAMLYLALYLRFAGVSATNAGGGTPAGGIVGVVWIYIYALGWSFGHSVACYVVAAEIFPTRIRSVCMSFCFFVNWIVDYGITRATPNMLTNMGWGTFLLYAMLTYAGVVFIYFCLPEMKGRSIESMDDLFQRPLWTMWRHAYPTEEERTRHGVVEAARKGEDLGAEQKKDVQHVEAVADGLQTEDLNIDIRCY bitunicate_ascomycetes Aspergillus_terreus_NIH2624 Aspergillus_terreus_NIH2624 XM_001214692 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Henn,M.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Yandava,C.,_Denning,D.,_Nierman,B.,_Milne,T._and_Madden,K. NA 0:1683 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165930).COMPLETENESS:_incomplete_on_both_ends. NA 31-MAR-2008 Aspergillus_terreus_NIH2624_conserved_hypothetical_protein_(ATEG_05514)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_terreus_Q0CLC0_ASPTN.gb Aspergillus 115398200 Unpublished fungi XM_001214692 NA NA green_and_blue_molds sac_fungi NA 1683 NA mRNA NA NIH2624 NA Aspergillus_terreus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 341663 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Annotation_of_the_Aspergillus_terreus_NIH2624_genome NA XM_001214692.1 ATGGCCGGCGGAACAAGCATTTGGTTCAGCAAAGAGGCAAGATCCGACCCTAAGGAGATCTTCAACAGACGACTACTATACCTTCTTGTCTCCGTTTCTTGGGCAGGATGCTTCTATGGTTTCGATACCGGTAATATCGGGGGCATTCTCACCCTGAAGTCCTTTGAGAATGCCTTTGGTTTGATCAACGTCCCTCAAGCCGAGATTGACAACCGCAAGGGCACCATAGCAGCCATGCTTGCAGGCGGAGCATCGGCCGGCTCCATCCTCGCAGCCCCGACCTCTGATTTCATCGGTCGTAAATGGAGCGTATTCCTCTGGGGCGTGGTTTTCCTCGTGGGCGCCGCGATGCAGATGGATGCCAATTACGACGTCCTGATTGCCGGGCGCTTCATTGGAGGCATGGGCGTCGGGGCCAGCTCCATGCTCACGCCGCAGTTTCTGGCGGAAAACTCGCCCAAGTCCGTGCGTGGGTCCATGACGGCCACGTATAACCTCATGATCTTGATGGCCCTCATGCTCGCCTTCTGGGTGAACTACGGCGTGTCGTTGTGGTCGTACCCCGGCGTCGAGCATGATCATCGACAGTGGAGAACCGCCATGGGCATCCAGCTGATCCCCGGCGGCCTGATGTGTCTTATGATCCCCTGGGTTCCGGAGACGCCCCGGTACTTGATTAACCACGGCAAGGCTGAGCAGGGGTTGAACAATATCTGCAGGCTGCGCAAGCTCCCTGCGGACCATGAGTACGTGCAAATCGAGTACCAGGAGATTCAGGCCCAGGTGCGCTACGAGCAGGAATGCTACGCGGGACACAGCTACTGGGTTGTGGCGAAGGATATTTTCACAATCAAGAGCAATTTTCGACGGTTCTTCCTGGCTATCATGTTATTCCTGTTCCACAAATTCACCGGCACCGACTCGTTGAACTACTACGCTCCGGAGATCTTTCAGCTTATCGGAGTACATGATGACTCGTCTCTGCTCACAACCGGCGTGTACGGCGTCGTGAAGTTCGTGGTAACCATCATCTACGTCGCATATCTGGTCGACCGGGTAGGCCGTCGCCTGCCTCTGCTCATCGGCGCAACGATGCAAGCCACAGCGATGCTGTACTTGGCCCTTTACCTCCGCTTCGCCGGTGTCTCTGCTACAAATGCGGGGGGAGGAACGCCAGCCGGTGGGATCGTCGGTGTAGTCTGGATCTACATCTATGCGCTTGGCTGGTCGTTCGGTCACAGTGTAGCGTGCTACGTCGTGGCCGCAGAGATCTTCCCTACGAGAATTCGGTCCGTCTGCATGTCGTTTTGTTTCTTTGTCAACTGGATCGTTGACTATGGAATCACCCGCGCGACTCCGAATATGCTTACGAATATGGGATGGGGCACATTTCTGTTGTATGCTATGCTTACCTATGCTGGCGTCGTTTTCATCTACTTCTGTCTGCCTGAGATGAAGGGCCGTTCCATTGAGAGTATGGATGATCTGTTCCAGCGGCCGCTTTGGACCATGTGGAGGCATGCGTACCCTACAGAGGAGGAGAGAACTCGGCATGGAGTGGTCGAGGCAGCGCGGAAAGGCGAGGATCTTGGTGCAGAGCAGAAGAAAGACGTGCAGCATGTAGAGGCTGTCGCGGATGGTCTCCAGACTGAAGATTTGAATATAGATATTCGCTGCTACTGA > 129 ATEG_05082 NA hypothetical_protein XP_001214260.1 NA MGFRLRPPKTTRDVVPQKPAKGHYFFAHREFPRVPWWKRKNMRNLYIYIVLLILTNTANGFDGSMMNGLNTLSYWQEYFNYPRGAILGLFNASMSLGSLIGLFFVPYLIDWRGRKIGLLIGSLIMLLAVGLQSGARNFGMFVAARIVIGFGDCIVLGSAPLLIAEIAHPQDRAVLVTLSGASYHSGAFIASWVTLGTLSIESDWSWRLPSLLQAIFTVVIVAGVYWMPESPRWLIYKDRHQEALDVLIKYHAEGDEHDEFVQLEYAEIKAAIALDKDIGHTGWVDFLRSKGNRKRIALITALGLFSQWSGNGLISYYLKYVMDSVGITDAQTQLGINAGMKTEGLVTNFVFAFFIERLGRRPLYLASTIGTFLVFNAWTIVSARYDIAPNKALGYAFVFFTFLYGVFYDIKSGLMATYTTEILPYGLRAKGFTWLNFCVTAALFFNQYINAIALDAIHWKYYIVYCVFLAFEVWVIFSFLIETRYTPMEEIAKYFDGESAVDVGEVATADMKERGLDMDTVKGVSVHVEKQG bitunicate_ascomycetes Aspergillus_terreus_NIH2624 Aspergillus_terreus_NIH2624 XM_001214260 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Henn,M.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Yandava,C.,_Denning,D.,_Nierman,B.,_Milne,T._and_Madden,K. NA 0:1599 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165930).COMPLETENESS:_incomplete_on_both_ends. NA 31-MAR-2008 Aspergillus_terreus_NIH2624_conserved_hypothetical_protein_(ATEG_05082)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_terreus_Q0CMK2_ASPTN.gb Aspergillus 115397336 Unpublished fungi XM_001214260 NA NA green_and_blue_molds sac_fungi NA 1599 NA mRNA NA NIH2624 NA Aspergillus_terreus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 341663 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Annotation_of_the_Aspergillus_terreus_NIH2624_genome NA XM_001214260.1 ATGGGTTTCCGCCTCCGCCCCCCGAAGACGACTCGCGATGTCGTGCCCCAGAAGCCAGCAAAGGGGCACTACTTCTTCGCGCACCGGGAGTTCCCCCGCGTGCCCTGGTGGAAGCGCAAGAACATGCGCAACCTATACATCTACATCGTGCTGCTCATTCTCACCAACACGGCCAACGGCTTCGACGGCTCCATGATGAACGGTCTCAACACGCTCTCCTACTGGCAGGAATACTTCAACTACCCGCGCGGCGCCATCCTGGGCCTCTTCAACGCGTCCATGAGTCTGGGCTCGCTGATCGGCCTGTTCTTCGTCCCGTACCTGATCGACTGGCGCGGCCGTAAGATCGGCCTGCTGATCGGCTCCCTGATCATGTTGCTGGCCGTGGGCCTGCAGTCGGGCGCGCGCAACTTTGGCATGTTTGTCGCCGCGCGCATCGTCATCGGCTTTGGCGACTGCATCGTGCTGGGAAGTGCGCCGCTGCTGATTGCTGAGATTGCGCATCCGCAGGACCGTGCCGTGCTCGTGACGTTGAGCGGTGCGTCGTACCATTCGGGGGCGTTCATCGCCAGCTGGGTCACTCTGGGCACGTTGTCTATCGAAAGCGACTGGTCCTGGCGTCTTCCCAGTCTGCTGCAGGCCATCTTCACCGTGGTCATCGTGGCCGGCGTGTACTGGATGCCCGAGAGCCCGCGTTGGCTGATCTACAAAGACCGCCACCAGGAGGCTCTCGACGTGCTGATCAAGTACCACGCCGAGGGCGACGAGCACGACGAGTTCGTGCAGCTCGAGTACGCCGAGATCAAGGCGGCCATCGCGCTCGACAAGGACATCGGCCACACCGGCTGGGTCGACTTCCTCCGGTCCAAGGGCAACCGCAAGCGCATCGCGCTCATCACGGCCCTGGGTCTCTTCAGCCAGTGGAGCGGCAACGGGCTCATCTCCTACTACCTCAAGTATGTCATGGACAGCGTGGGCATCACGGACGCGCAGACGCAGCTCGGCATCAACGCCGGCATGAAGACCGAGGGTCTCGTCACGAACTTTGTCTTTGCCTTCTTCATCGAGCGGTTGGGACGGCGCCCGCTGTATCTGGCCTCGACCATCGGCACGTTCCTCGTCTTCAATGCGTGGACGATCGTCTCGGCGCGGTATGACATTGCGCCTAACAAGGCCCTGGGCTATGCGTTTGTCTTTTTTACGTTTTTGTACGGCGTCTTCTACGACATCAAATCCGGCCTGATGGCAACCTACACCACCGAAATCCTCCCCTACGGCCTCCGCGCCAAGGGCTTCACCTGGCTCAACTTCTGCGTGACGGCCGCGCTCTTCTTCAACCAGTACATCAACGCGATCGCGCTCGACGCCATCCACTGGAAATACTACATCGTGTACTGCGTGTTCCTGGCCTTCGAGGTGTGGGTCATCTTCTCGTTCCTGATCGAGACGCGCTACACGCCCATGGAGGAAATCGCCAAGTATTTCGACGGCGAGAGCGCCGTCGATGTTGGCGAGGTCGCCACGGCCGATATGAAGGAGCGCGGGCTGGATATGGATACGGTCAAGGGGGTGTCGGTGCATGTCGAGAAGCAGGGGTAG > 130 ATEG_04727 NA hypothetical_protein XP_001213905.1 NA MADTLGKKDLDDAPVSQVEETNVEVVKQFVPQSLASDGESAEKAQAEHINLNKNLSAKIKNPLADLTPDQVLRDVEEFANEHGLEESLPLLRKGVLISRDPENYRSVPGMTEEDITAIENEVVHKWRQPWSLYFTIILCSIGAAVQGWDQTGSNGMNINKAEPANLSFPAQMGIPQEGPNAARNQWIVGVVNAGPYIASACLGCWLSDPVNDFFGRRGAIFGSAIFCFAAPLGGAFCQTWPQMFVTRLLLGLGMGLKGSTIPIYCAENTPAVIRGGLVMSWQLWTAFGIFLGTCANLVVKDTGDIAWRLQIGSAFIPALPLIFGVYICPESPRWYIKKGQFKKAFESLRRLRNTELQAARDLYYIYAQVKVEQEIAGEGNYVTRFIELFTIPRLRRATLASFTVMLAQQMCGINIVAFYSSTIFEKAGAGYTGALWASFGFGLVNFLFAFPAVFTIDTYGRRALLLFTFPQMAWTLLAAGFCFYIPEENRAHLACIALFVFLFAAFYSPGEGPVPFTYSAEVFPLSHREVGMSWAVATCLGWAAVLSITFPRMLDAMTPTGAFGFYAGLNVTALVMIFFWVPETKQRTLEELDYIFAVPTRMHMSYQLKKALPYWVNRYIFRRNVTLEPLYKFDHLGNTA bitunicate_ascomycetes Aspergillus_terreus_NIH2624 Aspergillus_terreus_NIH2624 XM_001213905 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Henn,M.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Yandava,C.,_Denning,D.,_Nierman,B.,_Milne,T._and_Madden,K. NA 0:1923 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165929).COMPLETENESS:_incomplete_on_both_ends. NA 31-MAR-2008 Aspergillus_terreus_NIH2624_conserved_hypothetical_protein_(ATEG_04727)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_terreus_Q0CNK7_ASPTN.gb Aspergillus 115396531 Unpublished fungi XM_001213905 NA NA green_and_blue_molds sac_fungi NA 1923 NA mRNA NA NIH2624 NA Aspergillus_terreus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 341663 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Annotation_of_the_Aspergillus_terreus_NIH2624_genome NA XM_001213905.1 ATGGCGGATACCTTGGGGAAGAAAGACCTAGATGACGCGCCTGTTTCCCAGGTGGAGGAAACTAATGTGGAAGTCGTGAAGCAGTTTGTACCCCAGTCTCTTGCAAGCGACGGGGAGTCTGCCGAGAAGGCCCAGGCTGAGCATATCAACCTGAACAAAAACCTGTCAGCCAAGATCAAGAACCCCCTGGCAGACTTGACCCCAGACCAGGTCCTTCGTGATGTCGAGGAGTTTGCCAACGAGCATGGTCTGGAGGAGTCTCTTCCTCTTTTGAGAAAGGGTGTTCTGATCTCGCGGGACCCGGAGAATTACAGGTCGGTCCCAGGCATGACCGAAGAGGACATCACTGCGATTGAAAACGAGGTCGTCCACAAGTGGCGTCAGCCGTGGTCCCTGTACTTCACCATCATTCTCTGTTCCATTGGTGCCGCCGTCCAGGGATGGGATCAAACCGGAAGTAACGGTATGAATATCAACAAAGCAGAGCCTGCCAACCTCTCTTTCCCCGCACAGATGGGTATTCCCCAAGAGGGCCCAAACGCTGCGAGGAACCAGTGGATCGTGGGTGTCGTGAACGCCGGCCCCTATATCGCTAGCGCCTGTCTGGGCTGCTGGCTCTCGGACCCCGTGAATGACTTCTTCGGCCGCCGTGGTGCCATCTTCGGCTCGGCCATCTTCTGCTTCGCCGCTCCTCTTGGTGGTGCCTTCTGCCAAACCTGGCCCCAGATGTTCGTGACCCGGCTTCTGCTTGGATTGGGAATGGGCTTGAAAGGCTCGACTATCCCCATCTACTGTGCGGAGAATACGCCGGCCGTCATTCGTGGTGGTCTGGTCATGTCCTGGCAACTGTGGACCGCATTCGGCATTTTCCTCGGAACCTGCGCGAACCTGGTCGTCAAAGACACGGGCGATATTGCCTGGAGACTGCAAATCGGATCCGCCTTCATTCCTGCCCTGCCGTTGATTTTCGGTGTGTATATCTGCCCGGAGTCCCCTCGTTGGTACATCAAAAAGGGCCAGTTCAAGAAAGCATTCGAATCTCTTCGTCGGCTTCGGAACACCGAGCTTCAGGCGGCTCGGGATCTCTATTACATCTACGCGCAGGTCAAGGTGGAGCAAGAAATTGCTGGCGAAGGCAACTATGTCACCCGTTTCATTGAGCTGTTCACGATCCCCCGCCTGCGTCGGGCCACCCTGGCCTCCTTCACCGTCATGCTGGCCCAGCAGATGTGTGGTATCAACATCGTCGCCTTCTACTCGTCTACCATTTTTGAGAAAGCCGGCGCTGGTTATACCGGAGCTCTTTGGGCCTCGTTCGGCTTCGGTCTAGTGAATTTCCTGTTCGCCTTCCCCGCCGTCTTCACCATCGATACATACGGACGTCGCGCCCTGCTTCTCTTCACTTTCCCCCAGATGGCCTGGACGCTGCTGGCGGCCGGCTTCTGTTTCTACATCCCCGAAGAGAACAGAGCCCACTTGGCCTGTATCGCTCTGTTCGTCTTCCTGTTCGCCGCGTTCTACTCGCCAGGAGAAGGTCCCGTGCCGTTCACCTACTCGGCCGAGGTCTTTCCGCTTTCTCATCGTGAGGTTGGAATGTCTTGGGCTGTGGCCACTTGTCTCGGCTGGGCCGCCGTCCTTTCCATCACCTTCCCACGCATGCTGGACGCCATGACGCCGACAGGAGCTTTCGGATTCTATGCTGGTCTCAACGTCACTGCCTTGGTCATGATCTTCTTCTGGGTCCCCGAGACGAAGCAACGCACCCTCGAAGAACTCGACTACATCTTTGCCGTGCCGACTCGCATGCACATGAGCTACCAGCTGAAGAAGGCGCTTCCCTACTGGGTCAACCGGTACATCTTCCGCCGCAATGTGACGCTGGAGCCGCTGTACAAGTTCGACCATCTTGGCAATACGGCTTGA > 131 ATEG_04169 NA hypothetical_protein XP_001213347.1 NA MGRVYAIAIAAFAATGSFLFGYDSGVMTDVIESKNFLAYFNTTQTSAIVGAINSTFSGGAAIGALQGGLTMDRFGRKFTIQMGAVICLVGAILQAAAKNLAMILVGRILAGWAVGLMSMSVPVYQAELAHPKYRGFIIGLAQQMIGIGFIVSTWVGFGSLHAPVTSEFQWRFPLAFQTVPALLLVIGMFFFPESPRYLVEKERYEEAQKVLRRLHYDGTNEEWINSEYNEIKSTIEAEKAITAPGWAIMFKVPQWRMRLLHGTLVQVFTQMTNINVINYYQTIMYNSLGITGGRNILVTGIYNCVGPLTNLIFIIFLSDRVGRRKPMMFGAVAIGIVLVCQAALNSQNVDGTKHGYSIGGVFFIFCVTVIFSLSFGPCSWTYMAEVMPMQIRGTGNAFATGVGNWAVSTLWAQVSPIALGSIGWKFNFVFAAFNLLVTFPTIYFLFVETKQKSLEEIDLLFGGRALGTLPEQVNEKQEETQGSATNIEHTGV bitunicate_ascomycetes Aspergillus_terreus_NIH2624 Aspergillus_terreus_NIH2624 XM_001213347 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Henn,M.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Yandava,C.,_Denning,D.,_Nierman,B.,_Milne,T._and_Madden,K. NA 0:1479 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165928).COMPLETENESS:_incomplete_on_both_ends. NA 31-MAR-2008 Aspergillus_terreus_NIH2624_conserved_hypothetical_protein_(ATEG_04169)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_terreus_Q0CQ65_ASPTN.gb Aspergillus 115391684 Unpublished fungi XM_001213347 NA NA green_and_blue_molds sac_fungi NA 1479 NA mRNA NA NIH2624 NA Aspergillus_terreus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 341663 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Annotation_of_the_Aspergillus_terreus_NIH2624_genome NA XM_001213347.1 ATGGGTCGGGTCTACGCTATTGCAATCGCCGCATTTGCGGCAACTGGCTCGTTCCTGTTTGGGTACGACAGTGGTGTCATGACCGATGTGATCGAGTCGAAAAACTTCCTCGCCTACTTCAACACTACGCAGACATCTGCTATTGTCGGGGCTATCAACAGCACGTTCTCTGGCGGTGCTGCCATTGGGGCCCTCCAGGGAGGTCTGACCATGGACCGATTTGGTCGTAAATTCACCATTCAGATGGGTGCCGTAATTTGCCTCGTTGGTGCTATTCTACAGGCTGCGGCGAAAAATCTTGCTATGATCTTAGTTGGTCGAATTCTGGCCGGGTGGGCCGTGGGTCTCATGTCCATGTCGGTCCCCGTCTATCAAGCCGAGCTGGCTCATCCAAAGTACCGTGGTTTCATTATCGGTCTAGCTCAGCAGATGATCGGTATTGGATTTATTGTCAGCACCTGGGTTGGATTCGGCTCGCTCCATGCCCCTGTCACCAGTGAATTCCAATGGCGCTTCCCTCTGGCGTTCCAGACCGTTCCTGCGCTGCTCCTCGTCATTGGAATGTTCTTCTTCCCGGAGTCGCCGCGTTACTTGGTGGAGAAGGAGCGCTACGAAGAAGCGCAAAAGGTCCTCCGGAGGTTACACTATGACGGGACAAATGAGGAGTGGATCAACTCGGAATATAACGAGATCAAATCAACGATTGAGGCAGAGAAAGCCATCACGGCTCCGGGCTGGGCCATTATGTTCAAGGTTCCCCAATGGCGGATGCGGTTGCTACACGGTACTCTCGTCCAGGTCTTCACCCAGATGACCAACATCAATGTCATCAACTACTATCAAACCATCATGTACAACTCACTTGGCATTACGGGAGGGCGGAACATCCTGGTGACGGGTATCTACAATTGTGTTGGACCCCTGACGAACTTGATTTTCATCATCTTCTTGTCCGATCGAGTGGGACGCCGCAAGCCGATGATGTTCGGGGCGGTAGCTATTGGCATTGTACTGGTTTGCCAAGCGGCTCTAAACTCCCAGAACGTGGACGGAACCAAGCATGGCTACAGTATCGGAGGTGTCTTCTTCATCTTCTGCGTCACGGTCATCTTCTCCTTGTCGTTTGGACCATGCAGCTGGACGTACATGGCCGAAGTCATGCCGATGCAGATCCGAGGTACCGGCAACGCCTTTGCGACGGGCGTTGGCAACTGGGCTGTCAGTACGTTGTGGGCGCAGGTGTCGCCGATTGCCCTGGGCAGCATCGGATGGAAGTTCAACTTTGTTTTTGCCGCCTTCAATCTGCTGGTCACCTTCCCCACCATTTACTTTCTCTTTGTCGAAACGAAGCAAAAGTCTCTTGAAGAGATCGATCTGCTCTTCGGAGGACGGGCTCTGGGTACTTTGCCGGAGCAGGTGAACGAGAAACAGGAGGAGACGCAGGGGTCGGCGACGAACATCGAGCACACTGGAGTGTGA > 132 ATEG_03527 similar_to_monosaccharide_transporter hypothetical_protein XP_001212705.1 NA MKFSLPKKPHLKPKPESHFQNGAPGDHSSQTEIAPTGETVVDTPIPLLTWRSFVMGIFVSMGGFCFGYDTGQISGFLEMKDFLQRYGELNSEGTYYFSNARSGLIVALLSIGTLIGALIAAPIADRVGRKWSITGWCLMLCVGITIQISAPTGKWYQVAMGRWVAGLGVGALSLLVPMYQAESGPRHIRGSLVSTYQLFITLGIFVANCINFGTEARSDTGSWRIPMGITYLWAIILGAGMALFPESPRYDFRHGKVDKAISTISKMYGVPKNHRALILEFDEIQQKYQEEQERGQVTWVRLFRAPRMGYRVAVGVALQALQQLTGANYFFYYGTTIFKGAGIPNSYVTQMILGGVNFGCTFLGLYLIENYGRRRSLIAGALWMFICFMIFASVGHFLLDRENPERTKTPGVVMVVFACLFILGFASTWGPMVWTIIAELYPSEYRARAMSLATASNWLWNFLLAFFTPFITSAIDFRLGYVFAGCLFLAAGLVYVAVIEGRGRTLEEIDTMYVMKVPPWKSSKFVFPETAFPHHRESAEKDRVAHIDRNGNGREGPATESV bitunicate_ascomycetes Aspergillus_terreus_NIH2624 Aspergillus_terreus_NIH2624 XM_001212705 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Henn,M.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Yandava,C.,_Denning,D.,_Nierman,B.,_Milne,T._and_Madden,K. NA 0:1689 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165927).COMPLETENESS:_incomplete_on_both_ends. NA 31-MAR-2008 Aspergillus_terreus_NIH2624_hypothetical_protein_(ATEG_03527)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_terreus_Q0CS07_ASPTN.gb Aspergillus 115390399 Unpublished fungi XM_001212705 NA NA green_and_blue_molds sac_fungi NA 1689 NA mRNA NA NIH2624 NA Aspergillus_terreus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 341663 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Annotation_of_the_Aspergillus_terreus_NIH2624_genome NA XM_001212705.1 ATGAAATTCTCGCTGCCAAAGAAACCTCACTTGAAGCCGAAACCTGAATCCCACTTTCAGAATGGGGCCCCCGGAGACCACAGCTCGCAAACCGAGATCGCCCCAACAGGCGAGACTGTGGTGGATACGCCCATCCCGCTCTTGACCTGGCGATCCTTTGTGATGGGCATCTTCGTTTCCATGGGCGGATTCTGCTTCGGTTACGATACGGGTCAGATCTCTGGGTTTCTCGAAATGAAGGATTTCCTCCAGCGTTATGGCGAGCTTAACTCGGAGGGGACCTATTACTTCTCCAATGCCCGTTCTGGGCTTATTGTGGCTTTGCTTTCCATTGGCACGCTGATCGGTGCGCTTATTGCGGCTCCCATCGCCGATCGAGTCGGCCGAAAGTGGTCAATCACCGGGTGGTGTCTCATGCTCTGCGTGGGCATCACCATCCAAATCAGCGCGCCGACTGGAAAGTGGTACCAGGTAGCCATGGGGCGATGGGTTGCCGGCTTAGGCGTAGGTGCCCTTTCACTCCTTGTGCCCATGTACCAAGCCGAGTCTGGTCCGAGGCATATTCGTGGATCACTGGTCAGCACGTACCAATTGTTCATTACTCTGGGCATCTTCGTCGCAAACTGCATCAACTTCGGGACGGAAGCCCGGAGTGACACTGGATCCTGGCGCATCCCTATGGGTATCACCTACCTCTGGGCAATTATTCTCGGTGCCGGCATGGCGCTCTTCCCCGAGAGTCCGCGGTATGATTTCCGACATGGGAAAGTGGACAAGGCAATCTCTACCATATCCAAGATGTATGGCGTCCCCAAGAACCACCGCGCCCTCATCTTAGAGTTCGACGAAATCCAGCAGAAATACCAAGAGGAGCAGGAACGCGGCCAGGTAACCTGGGTCCGTCTGTTCCGAGCACCACGCATGGGGTATCGTGTTGCGGTTGGAGTCGCCCTGCAAGCGCTGCAGCAACTCACCGGGGCGAACTACTTCTTCTACTACGGTACCACCATCTTCAAAGGGGCCGGCATTCCGAACAGCTATGTCACCCAGATGATTCTCGGCGGCGTGAATTTTGGCTGCACGTTCTTGGGCCTGTACCTGATTGAGAACTACGGTCGTCGTCGCTCGCTGATTGCCGGCGCCTTGTGGATGTTCATCTGCTTTATGATCTTCGCGTCTGTCGGCCACTTCCTCCTCGACCGCGAGAATCCCGAACGGACCAAGACCCCGGGCGTGGTCATGGTCGTCTTTGCGTGTCTCTTCATCCTCGGCTTCGCCAGTACATGGGGGCCGATGGTGTGGACCATCATTGCCGAGTTGTATCCATCCGAGTACCGAGCCCGTGCGATGTCCCTGGCGACTGCGTCGAACTGGCTGTGGAACTTCCTCTTGGCGTTCTTCACGCCCTTCATCACTAGCGCCATTGATTTCCGGCTAGGGTATGTCTTTGCAGGGTGTCTGTTCCTTGCGGCTGGGCTTGTGTATGTTGCGGTGATTGAAGGTCGTGGGCGCACCCTGGAGGAGATTGACACCATGTATGTCATGAAGGTGCCCCCGTGGAAGAGCTCCAAGTTTGTGTTCCCAGAGACGGCTTTCCCCCACCACAGAGAGTCGGCTGAGAAAGATCGGGTTGCTCATATTGATCGGAACGGGAATGGGCGGGAAGGGCCTGCTACGGAGAGCGTGTAA > 133 ATEG_02527 NA hypothetical_protein XP_001211705.1 NA MKGEDIAEDKAHVEHLSEPADTKEAQQASAAEHEATFWQALKTNHKAALWSAAISLTIIMEGYDVGLIYQFFGYPAFQKTFGTYLPEKEGYEVSGPWQAGLSNGANAGIVIGGFLNGYLSARYGYKKVIIVALFFMNWFNFILFFASSAPVLLVGQILCGLTWGVFATTGPAYASEWSYRIAYAIQWVWPIPLIILILFAPESPWWLARNGKIDEVYKSLAKLDNRDRESHQKTVAQIQHTLELERKMEAGTSYLDCFRGIDRRRTEIACMAFAGQVLSGSPFAYGPTYFFVQAGISTDKSYQIAVGGTAIAFVGTVTSWFLLGRLGRRLLYVGGVACLTMFLLMIGIIASTSESSGAKWGQAALCLVWLFTYSTTIGPVTFTIISETSSMELRAKSVCLSRNVYNITQIIGNIVEPYLINPTEANLKGKTAYFWFGTAFLTTVWAYFRLPECQGRTYDELDIMFHEKVPARKFASYEVNVYDANTLRRKSVSRLIFSSLPLNRPHMNDLGLSLTLHNILYFLDTGIGATATTQDGAVDPHTAEAQPEKVHIRGVDELTTDDIKHFATQHFTVEQPSRIEWIDDTSANIVYSSADIGLQALSYFTQVTEEEDASALPALRLRSAKLLSTHPESVLQVRSAVKTDRKKPRAYEASRFYLMHPEHDPRERLRRELSDRRQDDSNDGDYRRRRFDGRELRRRRDRDADENFSASMYDDTRASSDDYSDSDRCRGGRGRRGPRELFPDDGRSSGRLRDRSASPGRDTLMDSGNPDRDEHGSRSRFRERSPHVSRRNEGKELFPTSGDSNARELFPNKPASSYLKKELFPSKVSNHRRSDAIDAADETADLFSRRISVPLMDGQQDDAPRNRNIELFPDSSEGNGVHIRGAAGQDQGMTIRGAAGISIKGRGASVRELFPEKYKSNAGKELFSDKIEGRGGPRRKAEDMFG bitunicate_ascomycetes Aspergillus_terreus_NIH2624 Aspergillus_terreus_NIH2624 XM_001211705 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Henn,M.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Yandava,C.,_Denning,D.,_Nierman,B.,_Milne,T._and_Madden,K. NA 0:2841 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165926).COMPLETENESS:_incomplete_on_both_ends. NA 31-MAR-2008 Aspergillus_terreus_NIH2624_conserved_hypothetical_protein_(ATEG_02527)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_terreus_Q0CUV7_ASPTN.gb Aspergillus 115388398 Unpublished fungi XM_001211705 NA NA green_and_blue_molds sac_fungi NA 2841 NA mRNA NA NIH2624 NA Aspergillus_terreus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 341663 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Annotation_of_the_Aspergillus_terreus_NIH2624_genome NA XM_001211705.1 ATGAAAGGCGAGGATATTGCAGAGGACAAGGCTCATGTAGAGCACCTGTCAGAGCCTGCAGATACGAAAGAAGCCCAGCAGGCATCTGCAGCTGAGCATGAGGCGACGTTCTGGCAGGCCCTAAAAACAAACCACAAGGCTGCATTATGGTCTGCAGCGATATCTCTGACGATCATCATGGAAGGATATGATGTTGGTCTGATTTATCAATTCTTTGGGTACCCAGCCTTCCAGAAGACCTTTGGTACGTATCTGCCGGAGAAAGAGGGATATGAGGTCTCTGGACCATGGCAAGCAGGTTTGAGCAACGGTGCCAATGCTGGTATTGTAATCGGCGGGTTTCTGAACGGCTATTTGTCCGCCAGATATGGGTACAAGAAAGTGATCATCGTTGCGCTGTTCTTCATGAACTGGTTCAACTTCATCCTGTTCTTTGCCTCATCGGCCCCCGTTCTCCTGGTCGGACAGATCCTGTGCGGACTGACGTGGGGTGTGTTCGCAACCACAGGGCCGGCATATGCATCGGAATGGTCCTATCGCATCGCCTATGCGATACAATGGGTATGGCCTATTCCCTTGATCATCTTGATCCTATTCGCACCAGAATCACCCTGGTGGCTGGCGCGAAACGGGAAAATCGACGAAGTCTACAAGTCACTAGCCAAGCTAGACAACAGAGACCGCGAGTCACACCAGAAAACGGTGGCACAAATCCAGCACACCCTCGAGCTCGAAAGGAAGATGGAGGCGGGAACCAGCTACCTGGATTGTTTCCGGGGCATTGACCGTCGCCGTACTGAGATTGCATGCATGGCCTTTGCGGGCCAGGTCCTGTCCGGCTCGCCCTTTGCGTATGGTCCTACGTACTTCTTCGTGCAGGCGGGAATCAGCACAGACAAGTCCTACCAGATTGCGGTTGGAGGGACTGCCATTGCGTTTGTGGGCACTGTGACCTCGTGGTTTTTGCTAGGCCGCCTTGGCCGGCGACTGTTATATGTGGGTGGCGTGGCTTGTCTCACCATGTTTCTGCTGATGATCGGTATCATCGCGTCAACTTCGGAGTCCAGCGGCGCCAAATGGGGCCAGGCGGCTCTCTGTCTCGTCTGGCTGTTCACATATTCCACCACCATTGGCCCTGTCACCTTTACCATCATCTCCGAGACCTCCTCCATGGAGCTGAGAGCCAAGTCGGTCTGTCTATCGCGGAACGTCTATAACATCACGCAGATCATTGGAAACATCGTGGAGCCGTATCTGATCAACCCGACTGAGGCCAATCTAAAAGGGAAGACGGCGTACTTCTGGTTTGGGACGGCCTTTTTAACCACCGTGTGGGCCTACTTTCGGCTACCAGAATGCCAGGGAAGGACGTATGATGAGTTGGATATCATGTTCCATGAGAAAGTGCCGGCTCGGAAGTTTGCCAGCTATGAGGTGAATGTATATGACGCGAATACGCTGCGGAGGAAGTCTGTATCCCGCCTCATCTTCTCCTCACTTCCCCTCAACCGCCCTCACATGAATGATCTCGGCCTTTCCCTGACACTACACAATATCCTTTACTTTTTAGACACCGGAATCGGTGCGACCGCCACCACCCAGGATGGGGCAGTCGACCCTCACACGGCAGAAGCACAACCCGAGAAAGTTCACATCCGAGGCGTGGATGAGCTGACAACGGATGATATCAAACATTTCGCGACCCAACACTTTACCGTGGAACAACCGTCTCGAATCGAATGGATCGACGACACCTCCGCGAACATTGTCTACTCATCCGCAGACATCGGCCTGCAAGCGCTGTCCTACTTCACACAGGTCACCGAGGAAGAAGATGCATCTGCCCTACCGGCGCTCCGCCTCCGATCGGCCAAGCTCCTATCGACCCATCCGGAGTCCGTGCTGCAGGTGCGCTCGGCCGTGAAGACAGACCGCAAGAAGCCCCGCGCCTACGAAGCAAGTCGATTCTACCTCATGCACCCCGAACATGACCCGCGCGAACGGTTGCGCCGTGAACTGTCCGACCGGCGACAAGACGACTCGAACGATGGCGACTACAGACGCAGGCGGTTCGATGGGCGCGAGCTGCGCCGTCGCAGAGACCGCGATGCCGACGAGAACTTCAGCGCGAGCATGTACGATGATACCAGAGCTAGCAGCGACGATTACTCCGACTCGGACAGATGTCGTGGTGGACGCGGACGTCGAGGGCCCCGTGAGCTGTTCCCCGACGACGGACGCTCCTCCGGTCGTCTGCGGGACCGCAGCGCGTCACCCGGTAGAGATACCCTGATGGATAGTGGCAACCCCGATCGGGATGAGCATGGATCGCGCAGTCGGTTCCGAGAACGATCTCCCCATGTTAGTCGTCGGAACGAAGGCAAGGAGTTGTTCCCTACGTCTGGCGATTCCAACGCGCGAGAGCTGTTCCCCAACAAACCGGCGTCGAGTTATCTCAAGAAGGAGCTTTTCCCGAGCAAGGTCAGCAATCACCGTCGGTCTGATGCCATCGACGCGGCCGACGAAACCGCCGATCTTTTCTCTCGGCGGATTTCGGTTCCCTTGATGGACGGTCAGCAGGATGATGCGCCGCGGAACAGGAACATCGAGCTGTTCCCGGATTCTTCGGAAGGGAACGGCGTTCACATCCGTGGTGCCGCTGGTCAGGACCAAGGCATGACGATTCGCGGCGCCGCGGGCATCTCGATCAAGGGACGGGGTGCTTCTGTTCGTGAGCTGTTCCCGGAGAAGTACAAGTCCAACGCTGGCAAGGAGCTTTTCTCCGATAAGATCGAGGGACGAGGAGGTCCGCGCCGCAAGGCTGAAGACATGTTCGGATGA > 134 ATEG_01584 NA hypothetical_protein XP_001208949.1 NA MADNPISDTTLWQNRKCLFLCCLVSMANMQYGFDLAAVGSLQAMPGFLKVFGYRDPESEMGYAIDSTVQQLITSLLTLGSFISSLVAGFFSAYLGRRAALWLACVVNAVACAIQIGTTSPGVLYLGRLLLGFANGFLVTFSNIYTAEASPAHMRGVMVALFAYWVNIGSILGAAVDNKTKERLGPLSYQIPLACLYIVPALLFIALFFVPESPRWLLHRGKEKAARKALEQLRGSSYDTILASPGGSDSDEIGSVVPTLLELELAEMVKGVEEEKREQGDVAARDMFRGADLRRTMLCYCMIGCQTASGVWFLIGYQTYFFTVCGIAKAFEFSIMNTCFGFLGVNIGMYAIRNLLGRRGILMLGAIACGLCQLATAIAATVSPNSLPTGQTLVAFTALFMFFYNGCVGAASYPVATELVSSRLRAWTVGTATSLGYLLAWLTNFCTPYFINPEHLNWGARYGYIWAASNLCCVVFFYFFMPEMKGRSLEELDEIFEARIPARKFQSYQCAIRETARIDAVNAKVDNEQKK bitunicate_ascomycetes Aspergillus_terreus_NIH2624 Aspergillus_terreus_NIH2624 XM_001208949 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Henn,M.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Oleary,S.,_Yandava,C.,_Denning,D.,_Nierman,B.,_Milne,T._and_Madden,K. NA 0:1593 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165925).COMPLETENESS:_incomplete_on_both_ends. NA 31-MAR-2008 Aspergillus_terreus_NIH2624_predicted_protein_(ATEG_01584)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Aspergillus_terreus_Q0CXK0_ASPTN.gb Aspergillus 115384803 Unpublished fungi XM_001208949 NA NA green_and_blue_molds sac_fungi NA 1593 NA mRNA NA NIH2624 NA Aspergillus_terreus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 341663 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Annotation_of_the_Aspergillus_terreus_NIH2624_genome NA XM_001208949.1 ATGGCCGACAATCCCATATCAGATACCACCCTATGGCAGAACCGCAAATGCCTCTTCCTCTGCTGTCTGGTCTCGATGGCCAATATGCAATATGGGTTCGATCTGGCAGCTGTGGGATCGCTCCAGGCGATGCCGGGCTTTCTCAAAGTTTTCGGATATCGAGATCCAGAATCGGAGATGGGGTATGCAATTGATAGCACGGTCCAGCAGTTAATAACCTCCCTCCTCACTCTAGGGTCCTTCATCTCTTCACTGGTGGCAGGATTTTTCTCCGCATATCTAGGCCGCCGGGCTGCACTATGGCTTGCATGTGTCGTGAACGCAGTGGCATGCGCCATCCAGATCGGGACTACCTCGCCGGGAGTCCTGTACCTAGGAAGACTACTTCTAGGATTTGCAAACGGCTTTCTGGTCACATTCTCCAACATCTACACTGCGGAGGCGTCCCCAGCCCACATGCGGGGCGTGATGGTTGCTCTATTTGCGTACTGGGTGAATATCGGGAGCATTCTCGGTGCTGCGGTGGATAACAAGACTAAAGAGCGTCTTGGTCCTCTGTCGTATCAAATACCTCTGGCATGTCTCTATATTGTTCCCGCCCTCCTTTTTATCGCACTGTTCTTTGTGCCCGAAAGCCCCAGGTGGCTGCTCCATCGAGGCAAAGAGAAAGCTGCGAGGAAGGCGCTGGAACAACTGCGTGGATCTAGCTACGACACTATCCTTGCTTCTCCCGGTGGCAGTGACAGTGATGAGATCGGGAGTGTAGTACCGACTCTACTCGAGCTGGAGTTGGCAGAGATGGTCAAGGGCGTGGAGGAAGAAAAGCGTGAGCAGGGTGATGTTGCCGCGCGGGATATGTTCCGAGGAGCTGACCTCCGTCGGACGATGCTCTGCTATTGCATGATCGGATGCCAGACTGCGTCCGGCGTCTGGTTCCTCATCGGTTACCAAACATACTTCTTCACCGTGTGCGGGATCGCCAAAGCGTTCGAGTTCTCCATCATGAACACCTGTTTCGGGTTCCTCGGGGTCAATATCGGCATGTATGCCATCCGGAATCTGTTGGGTCGTCGCGGGATCCTCATGCTGGGCGCCATTGCCTGCGGGCTGTGTCAACTCGCCACTGCGATTGCCGCAACGGTCAGCCCAAACTCTCTTCCCACGGGACAGACCCTAGTTGCCTTCACAGCTTTGTTCATGTTCTTCTATAACGGCTGTGTTGGCGCGGCGAGTTATCCCGTCGCGACGGAGTTGGTCAGCTCTCGACTACGCGCGTGGACGGTGGGCACCGCCACGTCGCTTGGATATCTACTTGCTTGGTTGACGAATTTCTGTACGCCTTATTTTATTAATCCCGAGCATCTGAACTGGGGGGCCCGCTATGGTTACATATGGGCGGCTTCTAACCTGTGCTGTGTTGTATTCTTTTACTTCTTCATGCCGGAGATGAAGGGGCGCTCTTTGGAGGAGTTGGATGAGATTTTTGAGGCTCGTATACCTGCGCGCAAATTCCAGTCTTATCAGTGTGCCATTCGAGAGACGGCACGGATCGATGCAGTCAATGCGAAAGTCGACAATGAACAGAAGAAATGA > 135 RBAM_036810 sugar_transporter_CsbC hypothetical_protein YP_001423241.1 11 MKKNTKKYLIYFFGALGGLLYGYDTGVISGALLFINNDIPLNTLTEGLVVSMLLLGAIFGSALSGTCSDRWGRRKVVFVLSLIFIIGALACAASQTVTMLIISRVILGLAVGGSTALVPVYLSEMAPTKIRGTLGTLNNLMIVTGILLAYIVNYIFTPFEAWRWMVGLAAVPAALLLIGIAFMPESPRWLVKRGREQEARQVMEMTHDKEDIAVELAEMKQGEAEKKESTLGLLKAKWIRPMLLIGIGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASVLGTMGIGVLNVIMCITAMILIDRIGRKKLLMWGSVGITLSLASLSAILLLAGLSASTAWLTVLFLGIYIVFYQATWGPVVWVLMPELFPSNARGAATGFTTLILSATNLIVSLVFPLMLSAMGIGWVFGIFSVICLSSFFFAAYIVPETKGRSLEEIETHLKKRFSLKKRSKQNQILKQRTL Bacillus/Lactobacillus/Streptococcus_group Bacillus_amyloliquefaciens_FZB42 Bacillus_amyloliquefaciens_FZB42 NC_009725 3788436..3789824 Chen,X.H.,_Koumoutsi,A.,_Scholz,R.,_Eisenreich,A.,_Schneider,K.,_Heinemeyer,I.,_Morgenstern,B.,_Voss,B.,_Hess,W.R.,_Reva,O.,_Junge,H.,_Voigt,B.,_Jungblut,P.R.,_Vater,J.,_Sussmuth,R.,_Liesegang,H.,_Strittmatter,A.,_Gottschalk,G._and_Borriss,R. NA 0:1389 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000560.Source_DNA_is_available_from_Rainer_Borriss_(Humboldt_UniversityBerlin,_Institute_of_Biology,_Bacterial_Genetics_Chausseestr._117D-10115_Berlin,_Germany).COMPLETENESS:_full_length. NA 24-JAN-2012 Bacillus_amyloliquefaciens_FZB42,_complete_genome. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_amyloliquefaciens_A7ZAI4_BACA2.gb Bacillus_rRNA_group_1 154684518 Nat._Biotechnol._25_(9),_1007-1014_(2007) NA NC_009725 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 17704766 1389 NA genomic_DNA NA FZB42 NA Bacillus_velezensis_Ruiz-Garcia_et_al._2005 NA forward NA NA NA NA NA NA Bacillus_amyloliquefaciens_subsp._plantarum NA NA NA prokaryotes NA 326423 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus Comparative_analysis_of_the_complete_genome_sequence_of_the_plant_growth-promoting_bacterium_Bacillus_amyloliquefaciens_FZB42 NA NC_009725.1 GTGAAGAAAAACACCAAAAAATACCTGATTTACTTTTTCGGAGCATTAGGCGGGCTGCTTTACGGCTATGACACCGGTGTGATTTCAGGGGCTTTGTTATTTATTAACAATGATATTCCTTTAAACACGCTGACCGAGGGATTGGTCGTCAGCATGCTGCTGCTCGGTGCGATTTTCGGGTCCGCATTAAGCGGGACATGCTCTGACCGATGGGGCCGGAGAAAAGTGGTTTTCGTCCTTTCACTCATTTTTATTATCGGCGCGCTTGCCTGTGCGGCTTCGCAAACCGTCACCATGCTGATTATCTCCCGTGTCATTCTCGGGTTAGCCGTCGGGGGCTCAACGGCGCTGGTTCCCGTTTATCTATCTGAGATGGCGCCGACAAAAATACGCGGAACGCTCGGCACATTGAATAACTTAATGATTGTAACCGGAATTTTACTCGCATATATCGTGAATTACATATTCACCCCGTTTGAAGCTTGGCGCTGGATGGTCGGTCTCGCCGCAGTACCGGCGGCGCTTTTATTAATCGGAATCGCGTTTATGCCGGAATCTCCGAGATGGCTCGTCAAACGCGGCCGTGAGCAGGAAGCCAGACAAGTCATGGAAATGACCCACGACAAAGAGGATATCGCCGTTGAATTGGCGGAAATGAAACAAGGAGAAGCCGAGAAAAAAGAATCTACGCTCGGCTTGCTGAAAGCAAAATGGATCCGTCCTATGCTGCTGATCGGGATCGGCCTCGCCATCTTCCAGCAGGCGGTCGGTATCAACACGGTGATTTACTATGCGCCGACCATCTTTACAAAGGCCGGACTCGGCACTTCGGCGTCCGTTCTCGGCACGATGGGCATCGGTGTCTTAAACGTCATCATGTGTATCACCGCCATGATCTTAATCGACCGGATCGGCCGGAAAAAACTGCTGATGTGGGGAAGCGTCGGCATTACCTTGAGCCTGGCGTCACTATCAGCCATTCTCCTTCTGGCCGGCCTGTCAGCTTCAACAGCATGGCTGACCGTGCTGTTTCTCGGCATCTATATCGTCTTCTACCAGGCGACCTGGGGTCCCGTCGTATGGGTTCTGATGCCGGAGCTGTTCCCGTCAAACGCACGCGGAGCCGCAACCGGATTTACGACATTGATTCTGTCGGCAACCAACCTGATCGTTTCACTGGTATTCCCGCTTATGCTGAGCGCTATGGGCATCGGCTGGGTATTCGGAATATTCTCAGTCATTTGCCTCTCATCTTTCTTCTTCGCCGCTTACATCGTTCCTGAAACGAAGGGCAGAAGTTTAGAAGAAATCGAAACGCACTTGAAAAAACGGTTCTCCTTAAAAAAGCGCAGCAAACAAAATCAAATTCTTAAACAGCGCACACTGTAA > 136 RBAM_037920 conserved_hypothetical_protein_YyaJ hypothetical_protein YP_001423348.1 11 MKHQTFSNVANRLDRLPISRVHYQVLTALGIIYFFDLADLFTLSNVAPALIEHWGVKLSTIADITAASFLGMFLGASIGGRLSDRIGRKKALNCFVLVFSISSFLNALAWDIPSLMIFRFLTGLGVAAAMIVTNSYLAEFFPSSVRGKYISLCAMIGLIGVPVTNVVSAFVIPLGSWGWRLVFVWGAAGLIYFFFIRRLEESPRWHENRGAYDQANAIMNRLEARAEKEKGPLPAPKEAAEVHTVKHAGYLGLFQGRNLKITIILSAVWILETFGFYGFASWVPSLLKSNGITMEKTLWYNVLHSVGAPLGALLGSMISETFQRKWILAASAFLTAIAGLLYGMTFIPLMIIVFGFVVNVTERIFTSNLYAYTSEPYPTEYRSAGSGLAYGLGRFSNIFGSLLVGFIAVKLGYISVFLFIGGCWLLCSVLLILFGPKTNAQQI Bacillus/Lactobacillus/Streptococcus_group Bacillus_amyloliquefaciens_FZB42 Bacillus_amyloliquefaciens_FZB42 NC_009725 3896831..3898162 Chen,X.H.,_Koumoutsi,A.,_Scholz,R.,_Eisenreich,A.,_Schneider,K.,_Heinemeyer,I.,_Morgenstern,B.,_Voss,B.,_Hess,W.R.,_Reva,O.,_Junge,H.,_Voigt,B.,_Jungblut,P.R.,_Vater,J.,_Sussmuth,R.,_Liesegang,H.,_Strittmatter,A.,_Gottschalk,G._and_Borriss,R. NA 0:1332 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000560.Source_DNA_is_available_from_Rainer_Borriss_(Humboldt_UniversityBerlin,_Institute_of_Biology,_Bacterial_Genetics_Chausseestr._117D-10115_Berlin,_Germany).COMPLETENESS:_full_length. NA 24-JAN-2012 Bacillus_amyloliquefaciens_FZB42,_complete_genome. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_amyloliquefaciens_A7ZAU1_BACA2.gb Bacillus_rRNA_group_1 154684518 Nat._Biotechnol._25_(9),_1007-1014_(2007) NA NC_009725 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 17704766 1332 NA genomic_DNA NA FZB42 NA Bacillus_velezensis_Ruiz-Garcia_et_al._2005 NA forward NA NA NA NA NA NA Bacillus_amyloliquefaciens_subsp._plantarum NA NA NA prokaryotes NA 326423 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus Comparative_analysis_of_the_complete_genome_sequence_of_the_plant_growth-promoting_bacterium_Bacillus_amyloliquefaciens_FZB42 NA NC_009725.1 ATGAAACATCAGACATTCTCAAATGTAGCGAACCGATTAGACCGTCTCCCCATTTCACGTGTGCATTATCAAGTATTAACCGCTCTCGGAATCATCTATTTTTTTGATCTCGCTGATCTGTTTACGCTCAGCAACGTGGCTCCGGCGCTGATTGAGCATTGGGGCGTGAAGCTGTCCACCATTGCCGACATCACGGCCGCATCCTTCCTGGGCATGTTTTTAGGCGCGTCCATCGGCGGAAGGCTGTCCGATCGGATCGGCAGGAAAAAAGCGCTGAATTGTTTTGTCCTTGTCTTTTCGATCTCATCTTTTCTGAATGCGCTGGCATGGGACATTCCGTCCTTAATGATTTTCCGCTTCTTGACCGGTCTCGGCGTCGCGGCCGCCATGATTGTGACGAACAGCTATTTGGCGGAATTTTTTCCATCCTCTGTACGGGGAAAATACATCTCCCTTTGCGCCATGATCGGACTAATCGGCGTTCCCGTCACAAACGTTGTTTCCGCTTTTGTCATTCCTTTAGGCTCATGGGGGTGGCGGCTCGTATTCGTATGGGGGGCGGCCGGTCTCATTTATTTCTTTTTTATCCGCCGGCTTGAGGAATCGCCGCGCTGGCACGAAAATCGGGGCGCATATGATCAGGCAAACGCCATTATGAACCGTCTTGAAGCACGTGCAGAGAAAGAAAAAGGCCCGCTTCCCGCGCCAAAAGAGGCGGCAGAAGTACATACAGTGAAGCACGCAGGCTACTTAGGGCTGTTTCAGGGCAGGAATTTAAAGATCACCATCATCCTGTCAGCGGTATGGATTCTTGAAACCTTTGGCTTTTACGGCTTTGCTTCATGGGTGCCCAGCCTGCTGAAAAGCAACGGCATCACCATGGAAAAAACGCTGTGGTACAATGTGCTTCACTCTGTCGGCGCGCCGCTTGGCGCATTGCTCGGTTCCATGATATCCGAAACGTTCCAAAGGAAATGGATTCTGGCCGCAAGCGCCTTTCTGACTGCCATTGCCGGACTGTTATACGGCATGACGTTTATTCCCCTCATGATTATTGTGTTTGGGTTTGTCGTTAACGTCACGGAACGGATCTTCACCTCAAATCTATACGCCTACACATCGGAACCGTATCCTACGGAATATCGCTCGGCCGGGAGCGGGCTGGCGTATGGGCTCGGCCGTTTTTCCAACATATTCGGCTCCCTGCTCGTCGGATTTATTGCCGTTAAGCTCGGCTACATCAGCGTCTTTTTGTTCATCGGCGGCTGCTGGCTTCTATGTTCCGTTTTGTTAATCCTCTTCGGCCCGAAAACAAATGCACAGCAAATTTAA > 137 BAS0868 NA alpha-ketoglutarate_permease YP_027144.1 11 MAQAKSNRVAGNIFKGSVGNLIEWYDWYVYSAFAVYFSAEFFPKGDPTSQLLNTAAIFAVGFLMRPIGSLLMGRYADRHGRRAALTLSITVMASGSLIIACTPSYESIGIMAPIILVLARLLQGLSLGGEYGTSATYLSEMASSGRRGFYSSFQYVTLVAGQMVALGVQIVLQQLLSEPDMKAWGWRIPFIIGAMGAVAVLWLRRTMDESEQFANIKSQKRESAGTVRTLMKHPKAVLTVVGLTLGGTVAFYTYTTYLQKFMVNTVGLPKEIVSWINFVALLIFVVLQPIAGLLSDKIGRRPLLMAFGILGTLLTAPIFFFMEKTTEPIVAFLLMMVGLIIVTGYTSINAIVKAELFPTEIRALGVGLPYALTVAIFGGTAEFIALWLKSIGMESLFYFYVAGCIAISFITYWRMDESSKTSQIEAELGGGDQLVNNKSS Bacillus/Lactobacillus/Streptococcus_group Bacillus_anthracis_str._Sterne Bacillus_anthracis_str._Sterne NC_005945 931053..932375 Brettin,T.S.,_Bruce,D.,_Challacombe,J.F.,_Gilna,P.,_Han,C.,_Hill,K.,_Hitchcock,P.,_Jackson,P.,_Keim,P.,_Longmire,J.,_Lucas,S.,_Okinaka,R.,_Richardson,P.,_Rubin,E._and_Tice,H. NA 0:1323 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE017225.The_Sterne_strain_of_Bacillus_anthracis_is_lacking_the_plasmidpXO2,_resulting_in_an_avirulent_phenotype_that_maintains_the_mainanthrax_toxin._Prevention_of_anthrax_in_cattle_can_be_accomplishedby_vaccination_with_living_spores_of_the_Sterne_strain._Mostlivestock_vaccines_in_use_throughout_the_world_are_derivatives_ofthe_live_spore_vaccine_formulated_by_Sterne_in_1937_and_still_usedescendants_of_his_strain_34F2_(Anthrax:_the_disease_in_relation_tovaccines._Hambleton,_P,_Carnabm_J,_and_Melling_J._Vaccine_19842:125-132_and_Anthrax_vaccines:_past,_present_and_future._Turnbull,PC._Vaccine_1991_9(8):533-539)._Plasmid_and_fosmid_libraries_wereprepared_at_the_Joint_Genome_Institute_in_Los_Alamos_(JGI-LANL),NM._Shotgun_sequencing_was_performed_at_the_JGI_Production_GenomicsFacility_(JGI-PGF)_in_Walnut_Creek,_CA._to_a_coverage_of_16x.Finishing_was_performed_at_JGI-LANL_starting_with_39_contigs_and_15scaffolds._Repetitive_regions_were_identified,_assembled_andfinished_individually_using_a_local_software_package_called_RepFin.Twenty_four_gaps_were_closed_with_primer_walks_and_15_by_PCR._Genepredictions_were_performed_using_Glimmer_and_tRNAs_were_identifiedusing_tRNAScan-SE._Basic_analysis_of_the_gene_predictions_wasperformed_by_searching_the_coding_sequence_against_the_PFam,BLOCKS,_and_Prodom_databases._For_the_most_part,_gene_definitionswere_transferred_directly_from_the_TIGR_Bacillus_anthracis_AmesGenBank_records_using_a_bi-directional_best_hit_mapping_between_thetwo_genomes._A_total_of_5415_features_have_been_annotated_on_thesequence_record.COMPLETENESS:_full_length. NA 21-JAN-2012 Bacillus_anthracis_str._Sterne_chromosome,_complete_genome. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_anthracis_Q81UF5_BACAN.gb Bacillus_rRNA_group_1 49183039 Unpublished NA NC_005945 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1323 NA genomic_DNA NA Sterne NA anthrax_bacterium NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 260799 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Complete_genome_sequence_of_Bacillus_anthracis_Sterne NA NC_005945.1 TTAACTAGACTTATTATTAACTAATTGATCCCCGCCACCAAGCTCCGCCTCAATCTGCGAAGTCTTCGATGATTCATCCATACGCCAATACGTAATAAAGCTGATGGCGATACATCCAGCTACGTAGAAGTAGAATAGTGATTCCATTCCGATACTTTTTAGCCATAATGCGATGAACTCAGCTGTTCCGCCGAATATCGCAACGGTTAGTGCATATGGTAAACCTACGCCAAGTGCGCGAATTTCAGTTGGGAAGAGTTCGGCTTTTACAATTGCGTTAATGGAAGTGTAACCAGTAACGATAATGAGGCCGACCATCATGAGTAAGAATGCTACGATTGGTTCTGTCGTTTTTTCCATAAAGAAGAAGATTGGTGCTGTTAGTAACGTTCCGAGAATACCGAATGCCATTAATAATGGGCGGCGGCCGATTTTATCAGATAGTAGCCCTGCAATCGGTTGAAGTACGACGAATATAAGTAGTGCGACAAAGTTAATCCAGCTTACAATTTCTTTCGGAAGACCGACTGTGTTTACCATGAATTTTTGTAAATATGTTGTGTACGTATAGAATGCAACAGTGCCTCCTAATGTTAGGCCGACTACTGTCAATACTGCTTTCGGATGTTTCATAAGAGTGCGAACGGTTCCTGCGCTCTCGCGTTTTTGTGATTTTATGTTTGCGAATTGCTCCGATTCATCCATCGTACGGCGAAGCCATAATACAGCTACTGCACCCATCGCTCCAATAATGAACGGAATGCGCCATCCCCAAGCTTTCATATCTGGTTCGCTTAGTAATTGCTGAAGAACAATTTGAACGCCTAATGCAACCATTTGCCCCGCAACGAGCGTTACATATTGGAAGCTTGAATAAAAACCGCGGCGACCACTACTAGCCATTTCAGATAAATACGTTGCGGAAGTTCCGTACTCTCCGCCAAGTGATAATCCTTGCAGTAAACGGGCAAGAACTAAAATAATTGGTGCCATAATACCGATGCTTTCGTAACTAGGTGTACAGGCGATAATTAAAGAACCACTGGCCATAACCGTAATCGAAAGCGTTAATGCTGCTCGGCGTCCGTGCCGATCTGCATAACGTCCCATTAGTAAACTTCCGATAGGGCGCATTAAAAATCCAACTGCGAAAATAGCCGCTGTGTTCAATAATTGACTCGTTGGATCACCTTTAGGAAAGAACTCTGCTGAAAAATAAACAGCGAAAGCAGAGTAAACGTACCAGTCGTACCATTCAATTAAATTGCCGACAGAACCTTTAAAAATATTGCCGGCGACTCGATTAGATTTTGCTTGAGCCAT > 138 BC059799_3361 identified_by_match_to_protein_family_HMM_PF07690 putative_membrane_protein EDX69682.1 11 MKKDFTENDTKTLLASRNALFLLFALPGVAFATWISRTAAARDILAVSNAEMGWILFGLSVGSIIGLLSASHFIDGKGARDVIIGSMFFMIVGLLCLGITIYFVSSMGAFGSLLVFGVGYGLAEVALNVEGSSIEQKLGTTLLPKFHGFFSVGTLVGALSGSAAISLHIPLLYQFLAISVVFVLLVCMLYHFLPHGTGKKEKSRNKKRAKHNPLRMEKKVLLLGLFVLGMAFAEGSANDWLPIVRVDGHQQSVVTGSIMYTIFVLAMTLARMCSSYFLDRFGRVAVVRATIMMAIIGMTIVIFGSNSYFLAFGVVLWGIGAALGFPIGLSAAGDSGENATSNVATVSIIGFTAFLVGPPFLGILGEAFGIRNALLAVLLFVILSGIVSSVTRENTSS Bacillus/Lactobacillus/Streptococcus_group Bacillus_cereus_NVH0597-99 Bacillus_cereus_NVH0597-99 ABDK02000002 380003..381196 Dodson,R.J.,_Durkin,A.S.,_Rosovitz,M.J.,_Rasko,D.A.,_Ravel,J._and_Sutton,G. NA 0:1194 B._cereus_NVH0597-99_was_isolated_from_a_spice_mix_in_1999,_and_isbelieved_to_be_the_cause_of_a_food-borne_outbreak_of_B._cereusdiarrheal_syndrome_in_Norway._The_isolate_also_resides_close_to_theB._anthracis_cluster_by_MLST_analysis.Annotation_was_updated_on_the_contigs_in_January_2010. NA 11-JAN-2010 Bacillus_cereus_NVH0597-99_gcontig2_1106483384188,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_cereus_B3Z4L5_BACCE.gb Bacillus_rRNA_group_1 196030979 Unpublished NA ABDK02000002 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1194 NA genomic_DNA NA NVH0597-99 NA Bacillus_medusa NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 451707 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Genome_sequence_of_Bacillus_cereus_NVH0597-99 NA ABDK02000002.1 TTAACTCGATGTATTCTCTCTCGTAACAGACGATACAATTCCAGACAAGATAACAAATAATAAAACTGCTAGCAAAGCATTACGTATTCCGAATGCTTCTCCAAGTATCCCTAAAAATGGTGGTCCGACTAAAAACGCTGTAAAACCGATTATAGAAACTGTCGCAACATTAGAAGTCGCATTTTCGCCGCTATCTCCAGCAGCAGAAAGACCAATTGGGAAACCTAGTGCGGCACCAATCCCCCACAGTACTACACCAAATGCTAGAAAATATGAGTTACTCCCAAATATGACAATTGTCATTCCTATAATAGCCATCATAATAGTAGCACGTACGACAGCGACACGACCGAATCGATCAAGAAAATAACTACTGCACATTCGAGCCAATGTCATTGCCAATACAAAAATAGTGTACATAATAGAACCTGTCACTACACTTTGCTGATGTCCGTCTACCCTCACGATAGGTAGCCAATCATTCGCACTTCCTTCTGCAAATGCCATTCCAAGCACAAAAAGACCAAGTAAAAGCACCTTTTTTTCCATACGTAAAGGATTATGCTTCGCTCGCTTTTTGTTCCGTGATTTCTCCTTCTTTCCTGTTCCATGCGGAAGAAAGTGATACAACATACATACAAGTAATACAAACACGACCGAAATCGCAAGGAATTGATACAAAAGTGGGATATGAAGAGAGATGGCGGCAGAACCACTGAGAGCGCCTACTAAAGTTCCTACACTAAAAAAGCCATGAAATTTCGGAAGAAGAGTTGTTCCTAGTTTCTGCTCAATAGAAGAACCCTCTACATTCAATGCAACTTCTGCTAATCCATATCCTACTCCAAATACTAGTAAGCTACCAAAAGCCCCCATACTAGAAACAAAATAAATAGTAATACCTAAACAAAGTAATCCAACGATCATAAAAAACATACTACCTATAATAACGTCTCTAGCTCCCTTACCGTCAATAAAGTGACTTGCACTCAGTAAACCAATTATTGAACCGACAGATAATCCGAACAAAATCCAGCCCATTTCTGCATTTGACACTGCTAAAATATCTCGCGCCGCTGCCGTTCTAGAAATCCATGTAGCAAACGCGACACCTGGCAAAGCAAATAAGAGGAATAGAGCATTTCGAGAGGCAAGTAGCGTCTTCGTATCATTCTCTGTAAAATCTTTCTTCAT > 139 BCQ_0998 Code:_GEPR;_COG:_COG0477 sugar_(and_other)_transporter,_major_facilitator_superfamily YP_002528720.1 11 MAQAKSNRVAGNIFKGSVGNLIEWYDWYVYSAFAVYFSAEFFPKGDPTSQLLNTAAIFAVGFLMRPIGSLLMGRYADRHGRRAALTLSITVMAGGSFIIACTPSYESIGIMAPIILVLARLLQGLSLGGEYGTSATYLSEMASSGRRGFYSSFQYVTLVAGQMVALGVQIVLQQLLSEPDMKAWGWRIPFIIGAMGAVAVLWLRRTMDESEQFSNIKSQKRESAGTVRALMKHPKAVLTVVGLTLGGTVAFYTYTTYLQKFMVNTVGLPKEVVSWINFVALLIFVVLQPIAGLLSDKIGRRPLLMAFGILGTLLTAPIFFFMEKTTEPIVAFLLMMVGLIIVTGYTSINAIVKAELFPTEIRALGVGLPYALTVAIFGGTAEFIALWLKSIGMESLFYFYVAGCIAISFITYWRMDESSKTSQIEAELDGGDSLKNGTSSK Bacillus/Lactobacillus/Streptococcus_group Bacillus_cereus_Q1 Bacillus_cereus_Q1 NC_011969 989499..990824 Xiong,Z.,_Jiang,Y.,_Qi,D.,_Lu,H.,_Yang,F.,_Yang,J.,_Chen,L.,_Sun,L.,_Xu,X.,_Xue,Y.,_Zhu,Y._and_Jin,Q. NA 0:1326 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000227.COMPLETENESS:_full_length. NA 29-SEP-2011 Bacillus_cereus_Q1_chromosome,_complete_genome. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_cereus_B9IS66_BACCQ.gb Bacillus_rRNA_group_1 222093774 J._Bacteriol._191_(3),_1120-1121_(2009) NA NC_011969 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 19060151 1326 NA genomic_DNA NA Q1 NA Bacillus_medusa NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 361100 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Complete_genome_sequence_of_the_extremophilic_Bacillus_cereus_strain_Q1_with_industrial_applications NA NC_011969.1 TTATTTTGAACTAGTACCATTCTTCAAACTATCCCCACCATCAAGCTCCGCCTCAATCTGCGAAGTCTTCGATGACTCATCCATACGCCAATACGTAATAAAGCTGATCGCGATACATCCGGCTACGTAGAAGTAGAATAGTGATTCCATTCCGATACTCTTTAGCCATAATGCGATAAACTCGGCTGTTCCGCCGAATATTGCAACGGTTAGTGCATATGGTAAACCTACGCCAAGTGCGCGAATTTCAGTTGGGAAGAGCTCTGCTTTTACAATTGCGTTAATCGATGTGTAACCAGTAACGATAATAAGGCCGACCATCATAAGTAAAAATGCTACGATTGGTTCTGTCGTTTTTTCCATAAAGAAGAAGATCGGTGCTGTTAGTAACGTTCCGAGAATACCGAATGCCATTAATAGTGGACGGCGTCCGATTTTATCGGATAGTAGCCCTGCAATCGGTTGAAGTACGACGAATATAAGTAGTGCGACAAAGTTAATCCAGCTTACAACTTCTTTCGGAAGACCGACTGTGTTTACCATGAATTTTTGTAAATATGTTGTGTACGTATAGAATGCAACAGTGCCTCCGAGTGTTAGGCCGACTACTGTTAATACTGCTTTCGGGTGTTTCATAAGAGCACGAACAGTTCCTGCGCTTTCGCGTTTTTGTGATTTTATGTTTGAGAATTGCTCCGACTCGTCCATCGTGCGGCGAAGCCATAATACAGCTACTGCGCCCATCGCTCCAATAATGAATGGAATGCGCCATCCCCAAGCTTTCATATCTGGTTCGCTTAGTAATTGCTGAAGAACAATTTGAACGCCTAACGCAACCATCTGTCCAGCAACGAGCGTTACATATTGGAAGCTTGAATAAAAACCGCGGCGACCACTACTAGCCATTTCAGATAAATACGTTGCGGAAGTTCCGTACTCTCCGCCAAGTGATAATCCTTGCAGCAAACGGGCAAGAACTAAAATAATTGGTGCCATAATACCGATACTTTCGTAACTAGGTGTACAGGCGATAATGAAAGAACCACCGGCCATAACCGTAATCGAAAGCGTTAATGCTGCTCGGCGTCCGTGCCGATCCGCATAGCGGCCCATTAATAAACTTCCGATAGGGCGCATTAAAAATCCAACTGCGAAAATAGCCGCTGTGTTCAGTAACTGACTCGTTGGATCTCCTTTAGGAAAGAACTCTGCTGAGAAGTAAACAGCGAAAGCAGAGTAAACGTACCAGTCGTACCATTCAATTAAATTGCCGACAGAACCTTTGAAAATATTGCCGGCGACTCGGTTTGATTTTGCTTGAGCCAT > 140 BCA_0965 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 alpha-ketoglutarate_permease YP_002748254.1 11 MAQAKSNRVAGNIFKGSVGNLIEWYDWYVYSAFAVYFSAEFFPKGDPTSQLLNTAAIFAVGFLMRPIGSLLMGRYADRHGRRAALTLSITVMAGGSFIIACTPSYESIGIMAPIILVLARLLQGLSLGGEYGTSATYLSEMASSGRRGFYSSFQYVTLVAGQMVALGVQIVLQQLLSEPDMKAWGWRIPFIIGAMGAVAVLWLRRTMDESEQFANIKSQKRESAGTVRALMKHPKAVLTVVGLTLGGTVAFYTYTTYLQKFMVNTVGLPKEVVSWINFVALLIFVVLQPIAGLLSDKIGRRPLLMAFGILGTLLTAPIFFFLEKTTEPMVAFLLMMVGLIIVTGYTSINAIVKAELFPTEIRALGVGLPYALTVAIFGGTAEFIALWLKSIGMESLFYFYVAGCIAISFITYWRMDESSKTSQIEAELGGGDSLKNGTSLK Bacillus/Lactobacillus/Streptococcus_group Bacillus_cereus_03BB102 Bacillus_cereus_03BB102 NC_012472 913374..914699 Dodson,R.J.,_Jackson,P.,_Munk,A.C.,_Brettin,T.,_Bruce,D.,_Detter,C.,_Tapia,R.,_Han,C.,_Sutton,G._and_Sims,D. NA 0:1326 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001407.The_authors_wish_to_acknowledge_the_Intelligence_TechnologyInnovation_Center_for_funding_the_sequencing_and_the_NIH/NIAID_forfunding_the_annotation_at_the_Pathema_Bioinformatics_ResourceCenter.DNA_Source:_Paul_Jackson,_jackson80@llnl.gov.COMPLETENESS:_full_length. NA 25-JAN-2012 Bacillus_cereus_03BB102,_complete_genome. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_cereus_C1EZT2_BACC3.gb Bacillus_rRNA_group_1 225862057 Unpublished NA NC_012472 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1326 NA genomic_DNA NA 03BB102 NA Bacillus_medusa NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 572264 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Genome_sequence_of_Bacillus_cereus_03BB102 NA NC_012472.1 TTATTTTAAACTAGTACCATTCTTCAAACTATCCCCACCACCAAGCTCCGCCTCAATCTGCGAAGTTTTCGATGACTCATCCATACGCCAATACGTAATAAAACTTATCGCGATACATCCAGCTACGTAGAAGTAGAATAGTGATTCCATTCCGATACTTTTTAGCCATAATGCGATGAACTCAGCTGTTCCGCCGAATATCGCAACTGTTAGTGCATATGGTAAACCTACGCCTAGTGCGCGAATTTCAGTTGGGAAGAGTTCTGCTTTTACAATTGCATTAATGGAAGTGTAACCAGTAACGATAATGAGACCGACCATCATGAGTAAAAATGCTACCATTGGTTCTGTCGTTTTTTCTAGGAAGAAGAAGATTGGTGCTGTTAGTAACGTTCCGAGAATACCGAATGCCATTAATAGTGGGCGACGTCCAATTTTATCGGATAATAGCCCTGCAATTGGTTGAAGTACGACGAAAATAAGTAGTGCAACAAAGTTAATCCAGCTTACAACTTCTTTCGGAAGACCGACTGTGTTTACCATAAACTTTTGTAAATATGTTGTGTACGTGTAGAATGCGACAGTGCCGCCTAGTGTTAGGCCGACTACTGTTAATACTGCTTTCGGGTGTTTCATAAGAGCGCGAACGGTTCCTGCGCTTTCGCGTTTTTGTGATTTTATGTTTGCGAATTGCTCCGACTCATCCATCGTGCGGCGAAGCCATAATACAGCTACTGCGCCCATCGCTCCAATAATGAATGGAATACGCCATCCCCAAGCTTTCATATCTGGTTCGCTTAGTAATTGCTGAAGAACAATTTGAACGCCTAACGCAACCATTTGCCCAGCTACAAGCGTCACATATTGGAAACTTGAATAAAAGCCACGGCGTCCACTACTAGCCATTTCAGATAAATACGTTGCGGAAGTTCCATACTCTCCGCCGAGTGATAATCCTTGTAGTAAACGGGCAAGAACTAAAATAATTGGTGCCATAATACCGATGCTTTCGTAACTAGGTGTACAGGCGATAATGAAAGAACCACCCGCCATAACCGTAATGGAAAGTGTTAATGCTGCCCGGCGTCCGTGCCGATCTGCATAGCGCCCCATTAATAAACTTCCGATAGGGCGCATTAAAAATCCAACTGCGAAAATAGCCGCTGTGTTCAGTAACTGACTCGTTGGATCTCCTTTAGGAAAGAACTCTGCTGAGAAGTAAACAGCGAAAGCAGAGTAAACGTACCAGTCATACCATTCAATTAAATTGCCGACAGAACCTTTGAAAATATTGCCGGCGACTCGGTTAGATTTTGCTTGAGCCAT > 141 bcere0002_3150 similar_to_putative_sialic_acid_transporter_PRK12307;_similar_to_Benzoate_transport_protein,_putative_of_Bacillaceae_UniRef_RepID=Q6I451_BACAN Benzoate_transport_protein EEK52589.1 11 MQPSAPPHLESTETIFSSSITKLVVFICWLAILADGYDLGIYGAVLPKLLEDKSWALSPAHAGTIASYALFGMFIGAILVGAITDLIGRKWTLICCLALFSITMGLAAIASSPELFGLSRFIGGIGLGGVIPTASALTVEYSPKKGNLLFMLLCLLAIL Bacillus/Lactobacillus/Streptococcus_group Bacillus_cereus_ATCC_10876 Bacillus_cereus_ATCC_10876 ACLT01000013 79794..80273 Read,T.D.,_Akmal,A.,_Bishop-Lilly,K.,_Chen,P.E.,_Cook,C.,_Kiley,M.P.,_Lentz,S.,_Mateczun,A.,_Nagarajan,N.,_Nolan,N.,_Osborne,B.I.,_Pop,M.,_Sozhamannan,S.,_Stewart,A.C.,_Sulakvelidze,A.,_Thomason,B.,_Willner,K._and_Zwick,M.E. NA 0:480 Genome_Coverage:_32.5XSequencing_Technology:_454. NA 30-APR-2009 Bacillus_cereus_ATCC_10876_contig00505,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_cereus_C2MVV7_BACCE.gb Bacillus_rRNA_group_1 228594733 Unpublished NA ACLT01000013 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 480 NA genomic_DNA 526980 ATCC_10876 NA Bacillus_medusa NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 526980 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Annotation_of_the_Bacillus_cereus_ATCC_10876_genome NA ACLT01000013.1 CTAAAGGATAGCCAGTAAACATAAGAGCATAAATAAAAGATTGCCTTTTTTTGGTGAATATTCAACAGTAAGTGCTGAAGCCGTTGGGATAACACCGCCTAATCCGATTCCTCCTATAAATCGAGATAATCCAAATAACTCAGGAGAAGAAGCGATAGCCGCTAAACCCATTGTGATAGAAAAAAGTGCTAAACAGCATATAAGCGTCCATTTACGCCCAATTAGATCTGTAATCGCTCCAACTAGAATAGCCCCAATAAACATCCCAAATAAAGCATAGCTTGCAATTGTACCAGCGTGCGCTGGTGATAGCGCCCAGCTTTTGTCTTCTAGGAGCTTTGGTAGAACGGCACCGTAAATACCTAAATCATATCCATCAGCTAAAATGGCTAGCCAACAAATAAAAACAACAAGTTTTGTAATAGAGCTTGAAAAGATAGTTTCTGTAGATTCTAGATGAGGTGGAGCTGAAGGTTGCAT > 142 bcere0006_8170 similar_to_alpha-ketoglutarate_transporter_PRK10406;_similar_to_Alpha-ketoglutarate_transporter,_MFS_superfamily_protein_of_Bacteria_UniRef_RepID=Q0SBC8_RHOSR Alpha-ketoglutarate_transporter,_MFS_super EEK69089.1 11 MAQAKSNRVAGNIFKGSVGNLIEWYDWYVYSAFAVYFSAEFFPKGDPTSQLLNTAAIFAVGFLMRPIGSLLMGRYADRHGRRAALTLSITVMAGGSLIIACTPSYESIGIMAPIILVLARLLQGLSLGGEYGTSATYLSEMASSGRRGFYSSFQYVTLVAGQMVALGVQIVLQQLLSEPDMKAWGWRIPFIIGAMGAVAVLWLRRTMDESEQFANIKSQKRESAGTVRALMKHPKAVLTVVGLTLGGTVAFYTYTTYLQKFMVNTVGLPKEVVSWINFVALLIFVVLQPIAGLLSDKIGRRPLLMAFGILGTLLTAPIFFFMEKTTEPIVAFLLMMVGLIIVTGYTSINAIVKAELFPTEIRALGVGLPYALTVAIFGGTAEFIALWLKSIGMESLFYFYVAGCIAISFITYWRMDESSKTSQIEAELVGGDSLKNGTSSK Bacillus/Lactobacillus/Streptococcus_group Bacillus_cereus_MM3 Bacillus_cereus_MM3 ACLW01000031 101063..102388 Read,T.D.,_Akmal,A.,_Bishop-Lilly,K.,_Chen,P.E.,_Cook,C.,_Kiley,M.P.,_Lentz,S.,_Mateczun,A.,_Nagarajan,N.,_Nolan,N.,_Osborne,B.I.,_Pop,M.,_Sozhamannan,S.,_Stewart,A.C.,_Sulakvelidze,A.,_Thomason,B.,_Willner,K._and_Zwick,M.E. NA 0:1326 Bacteria_available_from_BDRDGenome_Coverage:_30.8XSequencing_Technology:_454. NA 30-APR-2009 Bacillus_cereus_MM3_contig00524,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_cereus_C2PB38_BACCE.gb Bacillus_rRNA_group_1 228611746 Unpublished NA ACLW01000031 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1326 NA genomic_DNA NA MM3 NA Bacillus_medusa NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 526971 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Annotation_of_the_Bacillus_cereus_MM3_genome NA ACLW01000031.1 TTATTTTGAACTAGTACCGTTCTTTAAACTATCTCCACCAACTAACTCCGCCTCAATCTGCGAAGTCTTCGATGACTCATCCATACGCCAATACGTAATAAAGCTGATCGCGATACATCCAGCTACGTAGAAGTAGAATAGTGATTCCATTCCGATGCTCTTTAGCCATAGTGCGATGAACTCAGCTGTTCCACCAAATATCGCAACAGTTAGTGCATATGGTAAACCTACGCCAAGTGCACGAATTTCAGTTGGGAATAGTTCTGCTTTTACAATTGCGTTAATGGAAGTGTAGCCAGTAACGATAATGAGGCCGACCATCATGAGTAAAAATGCTACGATTGGTTCTGTCGTTTTTTCCATGAAGAAGAAAATTGGTGCTGTTAGTAATGTTCCGAGAATACCGAATGCCATTAATAGTGGGCGGCGTCCAATTTTATCGGATAGTAACCCCGCAATTGGTTGAAGTACGACGAAAATAAGTAGTGCGACAAAGTTAATCCAGCTTACAACTTCTTTCGGAAGACCGACTGTGTTTACCATGAATTTTTGTAAATATGTTGTGTACGTATAGAATGCAACAGTGCCTCCGAGTGTTAGGCCGACTACCGTTAATACTGCTTTCGGGTGTTTCATAAGAGCGCGAACGGTTCCTGCGCTTTCGCGTTTTTGTGATTTTATGTTTGCGAATTGCTCTGATTCATCCATTGTGCGGCGAAGCCATAATACAGCTACTGCACCCATCGCTCCAATAATGAATGGAATACGCCATCCCCAAGCTTTCATATCTGGTTCGCTTAGTAATTGCTGAAGAACAATTTGAACGCCTAACGCAACCATTTGTCCGGCAACGAGTGTTACATATTGGAAGCTAGAATAAAAGCCGCGGCGACCACTACTAGCCATTTCAGATAAATACGTTGCGGAAGTGCCGTACTCTCCGCCGAGTGATAATCCTTGAAGTAAACGAGCAAGAACTAAAATAATTGGCGCCATAATACCGATGCTTTCGTAACTAGGTGTACAGGCAATAATTAAAGAACCACCCGCCATAACCGTAATCGAAAGCGTTAATGCTGCCCGGCGTCCGTGCCGATCCGCATAACGCCCCATTAATAAACTTCCAATAGGGCGCATTAAAAATCCAACTGCGAAAATAGCTGCTGTGTTCAGTAACTGGCTCGTTGGATCTCCTTTAGGAAAGAACTCTGCTGAAAAATAAACGGCGAAGGCAGAGTAAACGTACCAGTCGTACCATTCAATTAAATTGCCGACTGAACCTTTGAAAATATTGCCGGCGACTCGGTTTGATTTTGCTTGAGCCAT > 143 bcere0007_8360 similar_to_alpha-ketoglutarate_transporter_PRK10406;_similar_to_Alpha-ketoglutarate_transporter,_MFS_superfamily_protein_of_Bacteria_UniRef_RepID=Q0SBC8_RHOSR Alpha-ketoglutarate_transporter,_MFS_super EEK74624.1 11 MAQAKSNRVAGNIFKGSVGNLIEWYDWYVYSAFAVYFSAEFFPKGDPTSQLLNTAAIFAVGFLMRPIGSLLMGRYADRHGRRAALTLSITVMAGGSLIIACTPSYESIGIMAPIILVLARLLQGLSLGGEYGTSATYLSEMASSGRRGFYSSFQYVTLVAGQMVALGVQIVLQQLLSEPDMKAWGWRIPFIIGAMGAVAVLWLRRTMDESEQFSNMESKNRESAGTVRALMKHPKAVLTVVGLTLGGTVAFYTYTTYLQKFMVNTVGLPKEVVSWINFVALLIFVVLQPIAGLLSDKIGRRPLLMAFGILGTLLTAPIFFFMEKTTEPIVAFLLMMVGLIIVTGYTSINAIVKAELFPTEIRALGVGLPYALTVAIFGGTAEFIALWLKSIGMESLFYFYVAGCIAISFITYWRMDESSKTSQIEAELGGGDKLVNNKSS Bacillus/Lactobacillus/Streptococcus_group Bacillus_cereus_AH621 Bacillus_cereus_AH621 ACLX01000033 7180..8502 Read,T.D.,_Akmal,A.,_Bishop-Lilly,K.,_Chen,P.E.,_Cook,C.,_Kiley,M.P.,_Lentz,S.,_Mateczun,A.,_Nagarajan,N.,_Nolan,N.,_Osborne,B.I.,_Pop,M.,_Sozhamannan,S.,_Stewart,A.C.,_Sulakvelidze,A.,_Thomason,B.,_Willner,K._and_Zwick,M.E. NA 0:1323 Bacteria_available_from_BDRDGenome_Coverage:_8.5XSequencing_Technology:_454. NA 30-APR-2009 Bacillus_cereus_AH621_contig00181,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_cereus_C2PS13_BACCE.gb Bacillus_rRNA_group_1 228617553 Unpublished NA ACLX01000033 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1323 NA genomic_DNA NA AH621 NA Bacillus_medusa NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 526972 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Annotation_of_the_Bacillus_cereus_AH621_genome NA ACLX01000033.1 TTAACTAGATTTATTATTAACTAATTTATCCCCGCCACCAAGCTCCGCCTCAATCTGCGAAGTCTTCGATGACTCATCCATACGCCAATACGTAATAAAGCTTATTGCGATACATCCAGCTACGTAAAAATAGAATAGTGATTCCATCCCGATACTCTTTAGCCATAATGCGATAAATTCCGCTGTTCCGCCGAATATCGCAACGGTTAGAGCATATGGTAAACCTACGCCTAGTGCGCGAATTTCAGTTGGGAAGAGTTCTGCTTTTACAATTGCGTTAATGGAAGTGTAACCAGTAACGATAATAAGGCCGACCATCATGAGTAAAAATGCTACGATTGGTTCTGTCGTTTTTTCCATAAAGAAGAAGATCGGTGCTGTTAGTAACGTTCCGAGAATACCGAAAGCCATTAAGAGTGGGCGGCGTCCAATTTTATCGGATAATAGCCCCGCAATCGGTTGAAGTACAACGAATATAAGTAGTGCGACAAAGTTAATCCAGCTTACAACTTCTTTCGGGAGACCGACTGTGTTTACCATGAATTTTTGTAAATATGTTGTGTACGTATAGAATGCAACAGTGCCTCCTAGTGTTAGACCGACTACTGTTAATACTGCTTTCGGGTGTTTCATAAGAGCGCGAACGGTTCCTGCGCTTTCGCGGTTTTTCGATTCCATATTTGAGAACTGCTCTGATTCATCCATCGTGCGGCGAAGCCATAATACAGCTACTGCTCCCATCGCACCAATAATGAATGGAATACGCCATCCCCAAGCTTTCATATCTGGTTCGCTTAGTAATTGCTGAAGAACAATTTGAACACCTAACGCAACCATCTGTCCAGCAACGAGCGTTACATATTGAAAACTTGAATAAAAACCACGGCGACCACTGCTAGCCATTTCAGATAAATATGTTGCGGAAGTTCCATACTCTCCGCCGAGTGATAATCCTTGAAGTAAACGAGCGAGAACTAAAATAATTGGTGCCATAATACCGATGCTTTCGTAACTAGGTGTACAGGCGATAATTAAAGAACCACCGGCCATAACTGTAATGGAAAGCGTTAATGCTGCCCGACGGCCGTGCCGATCCGCATAACGTCCCATTAATAAACTTCCGATAGGGCGCATTAAAAATCCGACTGCGAAAATAGCTGCTGTGTTCAGTAATTGACTTGTTGGATCTCCTTTAGGAAAGAACTCTGCTGAGAAATAAACAGCAAAAGCAGAGTAAACGTACCAGTCGTACCATTCAATTAAATTGCCGACGGAACCTTTAAAGATATTGCCGGCGACTCGGTTAGATTTTGCTTGAGCCAT > 144 bcere0011_8050 similar_to_alpha-ketoglutarate_transporter_PRK10406;_similar_to_Alpha-ketoglutarate_transporter,_MFS_superfamily_protein_of_Bacteria_UniRef_RepID=Q0SBC8_RHOSR Alpha-ketoglutarate_transporter,_MFS_super EEK90803.1 11 MIMAQAKSNRVAGNIFKGSVGNLIEWYDWYVYSAFAVYFSAEFFPKGDPTSQLLNTAAIFAVGFLMRPIGSLLMGRYADRNGRRAALTLSITVMAGGSLIIACTPSYESIGIMAPIILVLARLLQGLSLGGEYGTSATYLSEMASSGRRGFYSSFQYVTLVAGQMVALGVQIVLQQLLSEPDMKAWGWRIPFIIGAMGAVAVLWLRRTMDESEQFANIKSQKRESAGTIRALMKHPKAVLTVVGLTLGGTVAFYTYTTYLQKFMVNTVGLPKEVVSWINFVALLIFVVLQPIAGLLSDKIGRRPLLMAFGILGTLLTAPIFFFMEKTTEPIVAFLLMMVGLIIVTGYTSINAIVKAELFPTEIRALGVGLPYALTVAIFGGTAEFIALWLKSIGMESLFYFYVAGCIAISFITYWRMDESSKTSQIEAELGGGDTLVNNKSS Bacillus/Lactobacillus/Streptococcus_group Bacillus_cereus_m1550 Bacillus_cereus_m1550 ACMA01000020 13453..14781 Read,T.D.,_Akmal,A.,_Bishop-Lilly,K.,_Chen,P.E.,_Cook,C.,_Kiley,M.P.,_Lentz,S.,_Mateczun,A.,_Nagarajan,N.,_Nolan,N.,_Osborne,B.I.,_Pop,M.,_Sozhamannan,S.,_Stewart,A.C.,_Sulakvelidze,A.,_Thomason,B.,_Willner,K._and_Zwick,M.E. NA 0:1329 Bacteria_available_from_BDRDGenome_Coverage:_33.7XSequencing_Technology:_454. NA 30-APR-2009 Bacillus_cereus_m1550_contig00936,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_cereus_C2R483_BACCE.gb Bacillus_rRNA_group_1 228634200 Unpublished NA ACMA01000020 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1329 NA genomic_DNA NA m1550 NA Bacillus_medusa NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 526969 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Annotation_of_the_Bacillus_cereus_m1550_genome NA ACMA01000020.1 TTAACTAGACTTATTATTAACTAGTGTATCCCCACCACCAAGCTCTGCCTCAATCTGCGAAGTCTTCGATGACTCATCCATACGCCAATACGTAATAAAGCTGATCGCGATACATCCAGCTACGTAGAAGTAGAAGAGTGATTCCATTCCGATACTCTTTAGCCATAATGCGATGAACTCAGCTGTTCCGCCGAATATCGCAACGGTTAGTGCATATGGTAAACCTACGCCAAGTGCGCGAATTTCAGTTGGGAAGAGTTCTGCTTTTACAATTGCGTTAATCGATGTGTAACCAGTAACAATAATAAGGCCGACCATCATAAGTAAGAACGCTACGATTGGTTCTGTCGTTTTTTCCATGAAGAAGAAGATCGGTGCTGTTAGTAATGTTCCGAGAATACCGAATGCCATTAATAGTGGGCGGCGTCCAATTTTATCGGATAATAGCCCTGCAATTGGCTGAAGTACGACGAATATAAGTAGTGCGACAAAGTTAATCCAGCTTACAACTTCTTTCGGAAGGCCGACTGTGTTTACCATGAACTTTTGTAAATATGTTGTGTACGTATAAAATGCAACAGTGCCTCCTAATGTTAGGCCGACTACTGTTAATACTGCTTTCGGATGTTTCATAAGAGCGCGAATGGTTCCTGCGCTTTCACGTTTTTGTGATTTTATGTTTGCGAATTGCTCCGATTCATCCATCGTGCGGCGAAGCCATAATACAGCTACTGCACCCATCGCTCCAATAATGAATGGAATACGCCATCCCCAAGCTTTCATATCTGGTTCGCTTAGTAATTGCTGAAGAACAATTTGAACGCCTAACGCAACCATCTGTCCAGCAACGAGCGTGACATATTGGAAACTTGAATAAAAGCCCCGGCGACCACTACTAGCCATTTCAGATAAATACGTTGCGGAAGTTCCGTACTCTCCGCCGAGTGATAATCCTTGTAGTAAACGGGCAAGAACTAAAATAATGGGTGCCATAATACCGATGCTTTCGTAACTAGGGGTACAGGCGATAATTAAAGAACCACCGGCCATAACCGTAATCGAAAGCGTTAATGCTGCCCGGCGTCCGTTCCGATCCGCATATCGTCCCATTAATAAACTTCCGATAGGGCGCATTAAAAATCCAACTGCGAAAATAGCTGCTGTGTTCAGTAACTGACTCGTTGGATCGCCTTTTGGAAAGAACTCTGCTGAGAAGTAAACAGCGAAAGCAGAGTAAACGTACCAGTCGTACCATTCAATTAAATTGCCAACAGAACCTTTGAAAATATTGCCGGCGACTCGGTTAGATTTTGCTTGAGCCATAATCAT > 145 bcere0020_8050 similar_to_alpha-ketoglutarate_transporter_PRK10406;_similar_to_Alpha-ketoglutarate_transporter,_MFS_superfamily_protein_of_Bacteria_UniRef_RepID=Q0SBC8_RHOSR Alpha-ketoglutarate_transporter,_MFS_super EEL41745.1 11 MAQAKSSRVAGNIFKGSVGNLIEWYDWYVYSAFAVYFSAEFFPKGDPTSQLLNTAAIFAVGFLMRPIGSLLMGRYADRHGRRAALTLSITVMAGGSLIIACTPSYESIGIMAPIILVLARLLQGLSLGGEYGTSATYLSEMASSGRRGFYSSFQYVTLVAGQMVALGVQIVLQQLLSEPDMKAWGWRIPFIIGAMGAVAVLWLRRTMDESEQFSNIKSQKRESAGTISALMKHPKAVLTVVGLTLGGTVAFYTYTTYLQKFMVNTVGLPKEVVSWINFVALLIFVVLQPIAGLLSDKIGRRPLLMAFGILGTLLTAPIFFFMEKTTEPIVAFLLMMVGLIIVTGYTSINAIVKAELFPTEIRALGVGLPYALTVAIFGGTAEFIALWLKSIGMESLFYFYVAGCIAISFITYWRMDESSKTSQIEAELGGGDKLVNNKSS Bacillus/Lactobacillus/Streptococcus_group Bacillus_cereus_Rock3-29 Bacillus_cereus_Rock3-29 ACMJ01000024 5334..6656 Read,T.D.,_Akmal,A.,_Bishop-Lilly,K.,_Chen,P.E.,_Cook,C.,_Kiley,M.P.,_Lentz,S.,_Mateczun,A.,_Nagarajan,N.,_Nolan,N.,_Osborne,B.I.,_Pop,M.,_Sozhamannan,S.,_Stewart,A.C.,_Sulakvelidze,A.,_Thomason,B.,_Willner,K._and_Zwick,M.E. NA 0:1323 Bacteria_available_from_BDRDGenome_Coverage:_19.1XSequencing_Technology:_454. NA 30-APR-2009 Bacillus_cereus_Rock3-29_contig00255,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_cereus_C2V7Y9_BACCE.gb Bacillus_rRNA_group_1 228687842 Unpublished NA ACMJ01000024 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1323 NA genomic_DNA NA Rock3-29 NA Bacillus_medusa NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 526984 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Annotation_of_the_Bacillus_cereus_Rock3-29_genome NA ACMJ01000024.1 TTAACTAGATTTATTGTTAACTAATTTATCCCCACCACCAAGCTCCGCCTCAATCTGCGAAGTCTTTGATGACTCATCCATACGCCAATACGTAATAAAGCTGATCGCGATACATCCAGCTACGTAGAAGTAGAAGAGTGATTCCATTCCGATACTCTTTAGCCATAATGCGATGAACTCAGCTGTTCCGCCGAATATCGCAACTGTTAGTGCATATGGTAAACCTACGCCAAGTGCGCGAATTTCAGTTGGGAAGAGTTCGGCTTTTACAATTGCGTTAATTGATGTGTAACCAGTAACGATAATGAGGCCGACCATCATGAGTAAGAATGCTACGATTGGTTCTGTCGTTTTTTCCATAAAGAAGAAGATCGGCGCTGTTAGTAATGTTCCGAGAATACCGAATGCCATTAATAGTGGACGGCGTCCGATTTTATCGGATAGTAGTCCTGCAATCGGTTGAAGTACGACGAATATAAGTAGTGCGACAAAGTTAATCCAGCTTACAACTTCTTTAGGAAGGCCGACTGTGTTTACCATGAACTTTTGTAAATATGTTGTGTACGTATAAAATGCAACAGTGCCTCCTAGTGTTAGACCGACTACTGTTAATACTGCTTTCGGATGTTTCATAAGAGCGCTAATGGTTCCTGCGCTTTCGCGTTTTTGCGATTTTATGTTTGAGAACTGCTCCGACTCATCCATCGTGCGGCGAAGCCATAATACAGCTACTGCACCCATCGCTCCAATAATGAACGGAATGCGCCATCCCCAAGCTTTCATATCTGGTTCGCTTAGTAATTGTTGAAGAACAATTTGAACGCCTAACGCAACCATTTGTCCAGCAACGAGCGTTACATATTGGAAGCTTGAATAAAAACCACGGCGACCACTACTAGCCATTTCAGATAAATACGTTGCGGAAGTTCCGTACTCTCCGCCAAGTGATAATCCTTGCAGTAAACGAGCAAGAACTAAAATAATTGGCGCCATAATACCGATGCTTTCGTAACTAGGTGTACAGGCGATAATTAAAGAACCACCGGCCATAACCGTAATGGAAAGAGTTAATGCTGCCCGGCGTCCGTGCCGATCTGCATATCGTCCCATTAGCAAACTGCCGATAGGGCGCATTAAAAATCCAACTGCGAAAATAGCTGCTGTGTTCAATAATTGACTCGTTGGATCTCCTTTAGGAAAGAACTCTGCTGAAAAATAAACGGCAAAAGCAGAGTAAACGTACCAGTCGTACCATTCAATTAAATTGCCGACAGAACCTTTGAAAATATTACCGGCGACTCGGCTAGATTTTGCTTGAGCCAT > 146 bcere0027_30200 similar_to_putative_sialic_acid_transporter_PRK12307;_similar_to_Sugar_(And_other)_transporter_of_Bacillus_cereus_group_UniRef_RepID=A0RGE6_BACAH Sugar_transporter EEL75666.1 11 MKKDFAENDTKTLLASRNALFLLFALPGVAFATWISRTAATRDILAVSNAEMGWILFGLSVGSIIGLLSASHFIDGKGARDVIIGSMFFMIVGLLCLGITIYFVSSMGAFGSLLVFGVGYGLAEVALNVEGSAIEQKLGTTLLPKFHGFFSIGTLVGALSGSAAISLHIPILYQFLAISVMFVLLVCMLYRFLPHGTGKKEKSRNKKRAKHTSLRMEKKVLLLGLFVLGMAFAEGSANDWLPIVMVDGHEQSVVTGSIMYTIFVLAMTLARMCSSYFLDRFGRVAVMRATIMMAIIGMTIVIFGSNSYFLALGVVLWGIGAALGFPIGLSAAGDDSGNATSNVAAVSIIGFTAFLVGPPFLGILGEAFGIRNALLAVLLFVILSGIVSSVMRENASI Bacillus/Lactobacillus/Streptococcus_group Bacillus_cereus_AH676 Bacillus_cereus_AH676 ACMQ01000142 8007..9200 Read,T.D.,_Akmal,A.,_Bishop-Lilly,K.,_Chen,P.E.,_Cook,C.,_Kiley,M.P.,_Lentz,S.,_Mateczun,A.,_Nagarajan,N.,_Nolan,N.,_Osborne,B.I.,_Pop,M.,_Sozhamannan,S.,_Stewart,A.C.,_Sulakvelidze,A.,_Thomason,B.,_Willner,K._and_Zwick,M.E. NA 0:1194 Bacteria_available_from_BDRDGenome_Coverage:_12.9XSequencing_Technology:_454. NA 30-APR-2009 Bacillus_cereus_AH676_contig00111,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_cereus_C2YCW0_BACCE.gb Bacillus_rRNA_group_1 228724323 Unpublished NA ACMQ01000142 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1194 NA genomic_DNA NA AH676 NA Bacillus_medusa NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 526991 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Annotation_of_the_Bacillus_cereus_AH676_genome NA ACMQ01000142.1 TTAAATCGATGCATTCTCTCTCATAACAGACGATACAATTCCAGACAAGATAACAAATAATAAAACAGCTAGCAAAGCATTACGTATTCCGAATGCTTCTCCAAGTATTCCTAAAAATGGTGGTCCGACTAAAAACGCTGTAAAACCGATGATAGAAACTGCAGCAACATTAGAAGTCGCATTTCCACTGTCATCTCCAGCAGCAGAAAGCCCAATCGGGAAACCTAACGCGGCACCAATCCCCCACAGTACTACACCAAGTGCTAGAAAATATGAGTTACTCCCAAATATGACGATTGTCATTCCTATAATCGCCATCATAATAGTAGCACGCATAACCGCGACACGACCGAATCGATCAAGAAAATAACTACTGCACATTCGAGCTAATGTCATTGCCAATACAAAAATAGTGTACATAATAGAACCTGTTACTACACTTTGCTCATGTCCATCTACCATCACAATAGGTAACCAATCATTTGCACTTCCTTCTGCAAATGCCATTCCAAGCACAAAAAGACCAAGTAAAAGCACCTTTTTTTCCATCCGTAAAGAAGTATGTTTCGCTCGCTTTTTGTTTCGCGATTTCTCCTTCTTTCCTGTCCCATGCGGAAGAAAACGATACAACATACATACAAGTAATACAAACATGACCGAAATCGCAAGAAATTGATACAGAATTGGGATGTGAAGCGAGATGGCGGCAGAACCACTGAGCGCGCCTACTAAAGTTCCTATACTAAAAAAGCCATGGAATTTCGGAAGAAGAGTTGTTCCTAATTTCTGCTCAATGGCAGAACCTTCTACATTCAATGCGACTTCTGCTAATCCATATCCTACTCCAAATACTAGTAAGCTACCAAAAGCCCCCATACTAGAAACAAAATAAATAGTAATACCTAAACAAAGCAATCCAACAATCATAAAAAACATACTGCCTATAATAACGTCTCTAGCTCCCTTACCGTCAATAAAATGACTTGCACTTAGTAAACCAATTATTGAACCGACAGATAATCCGAACAAAATCCAGCCCATTTCTGCATTTGACACTGCTAAAATATCTCGAGTAGCTGCTGTTCTAGAAATCCATGTAGCAAATGCCACACCTGGCAAAGCAAATAAGAGGAATAGAGCATTTCGAGAGGCAAGTAGCGTCTTTGTATCATTTTCCGCAAAATCTTTCTTCAT > 147 BCZK3049 NA sugar_(and_other)_transporter,_N-terminal_region YP_084636.1 11 MKKDFTENDTKTLLASRNALFLLFALPGVAFATWISRTAAARDILAVSNAEMGWILFGLSVGSIIGLLSASHFIDGKGARDVIIGSMFFMIVGLFCLGITIYFASSMGAFGSLLVFGVGYGLAEVALNVEGSSIEQKLGTTLLPKFHGFFSVGTLVGALSGSAAISLHIPIWYQFLAISVVFVLLVCMLYRFLPHGTGKKEKSRNKK Bacillus/Lactobacillus/Streptococcus_group Bacillus_cereus_E33L Bacillus_cereus_E33L NC_006274 3177601..3178224 Han,C.S.,_Xie,G.,_Challacombe,J.F.,_Altherr,M.R.,_Bhotika,S.S.,_Brown,N.,_Bruce,D.,_Campbell,C.S.,_Campbell,M.L.,_Chen,J.,_Chertkov,O.,_Cleland,C.,_Dimitrijevic,M.,_Doggett,N.A.,_Fawcett,J.J.,_Glavina,T.,_Goodwin,L.A.,_Green,L.D.,_Hill,K.K.,_Hitchcock,P.,_Jackson,P.J.,_Keim,P.,_Kewalramani,A.R.,_Longmire,J.,_Lucas,S.,_Malfatti,S.,_McMurry,K.,_Meincke,L.J.,_Misra,M.,_Moseman,B.L.,_Mundt,M.,_Munk,A.C.,_Okinaka,R.T.,_Parson-Quintana,B.,_Reilly,L.P.,_Richardson,P.,_Robinson,D.L.,_Rubin,E.,_Saunders,E.,_Tapia,R.,_Tesmer,J.G.,_Thayer,N.,_Thompson,L.S.,_Tice,H.,_Ticknor,L.O.,_Wills,P.L.,_Brettin,T.S._and_Gilna,P. NA 0:624 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000001.COMPLETENESS:_full_length. NA 22-JAN-2012 Bacillus_cereus_E33L_chromosome,_complete_genome. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_cereus_Q638N1_BACCZ.gb Bacillus_rRNA_group_1 52140164 J._Bacteriol._188_(9),_3382-3390_(2006) NA NC_006274 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 16621833 624 NA genomic_DNA NA E33L NA Bacillus_medusa NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 288681 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Pathogenomic_sequence_analysis_of_Bacillus_cereus_and_Bacillus_thuringiensis_isolates_closely_related_to_Bacillus_anthracis NA NC_006274.1 TCACTTTTTGTTCCGTGATTTCTCCTTCTTTCCTGTTCCATGCGGAAGAAAACGATACAACATACATACAAGTAATACAAACACGACCGAAATCGCAAGGAATTGATACCAAATTGGAATATGAAGAGAGATGGCGGCAGAACCACTGAGAGCGCCTACTAAAGTTCCTACACTAAAAAAGCCATGGAATTTCGGAAGAAGAGTTGTTCCTAGTTTCTGCTCAATAGAAGAACCCTCTACATTCAATGCAACTTCTGCTAATCCATATCCTACTCCAAATACTAGTAAGCTACCAAAAGCCCCCATACTAGAAGCAAAATAAATAGTAATACCTAAACAGAATAATCCAACGATCATAAAAAACATACTACCTATAATAACGTCTCTAGCTCCCTTACCATCAATAAAGTGACTTGCACTCAGTAAACCAATTATTGAACCGACAGATAATCCGAACAAAATCCAGCCCATTTCTGCATTTGACACTGCTAAAATATCTCGCGCCGCTGCCGTTCTAGAAATCCATGTAGCAAACGCGACACCTGGCAAAGCAAATAAGAGGAATAGAGCATTTCGAGAGGCCAGTAGCGTCTTTGTATCATTCTCTGTAAAATCTTTCTTCAT > 148 BcoaDRAFT_5755 PFAM:_major_facilitator_superfamily_MFS_1;_General_substrate_transporter;_KEGG:_bur:Bcep18194_A4860_major_facilitator_transporter major_facilitator_superfamily_MFS_1 EEN93276.1 11 MNQTIGHQLDRLSVGKVQRRATMVIGMGLFFDFFELFLAGVLSSVLGEEFHVSASLMPLLLGSSFLGMFIGAIFLCHIADRYGRKRAFMLNIGIYSLFTIFIAFSPNVGTVIFFRFLAGMGLGAQPALCDTYLSELIPSVKRGKYIAWAYTLGFLAVPVEGFLSRVLVPLSPMGLDGWRWVFLLGAAGGVFVLIAARSLPESPRWLATKGRMQEAVALLERFQEGKKEAGMVSKLQSEPADQTPKGSTLSAVFQKRLWKSTVMLYIFQIFQTIGYYGFGTLAPLVLASKGYTVTHSLEYIALSFIGYPLGSLLSVPLIEKMDRKWLVCFSAVCMGVFGVLFGIGGSPFLVIVFGFAYTLCSNIFSNAFHVLQAEIFPTEIRASATGMAYSISRIMSGLMPFMLLPVLENEGATAMFIIVAIAMLIVVLDIALLAPKTTGRSLENIESLSEPQLFGKNRVHL Bacillus/Lactobacillus/Streptococcus_group Bacillus_coagulans_36D1 Bacillus_coagulans_36D1 AAWV02000001 2279338..2280723 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Chertkov,O.,_Brettin,T.,_Han,C.,_Detter,C.,_Pitluck,S.,_Patel,M.,_Ou,M.,_Rhee,M.S.,_Harbrucker,R.,_Ingram,L.O._and_Shanmugam,K.T. NA 0:1386 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4001342Source_DNA_and_Bacteria_available_from_K._Shanmugam_(shan@ufl.edu)Contacts:_K._Shanmugam_(shan@ufl.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)We_are_labeling_this_project_as_Permanent_Draft._No_further_work_onthis_project_is_planned_for_now.This_WGS_project_has_been_superceded_by_the_complete_genome_in(non-WGS)_GenBank_record_CP003056.##Metadata-START##Organism_Display_Name_::_Bacillus_coagulans_36D1GOLD_Stamp_ID_::_Gi01001Greengenes_ID_::_207475Sequencing_Depth_::_9.5xBody_Sample_SubSite_::_Intestinal_tractOxygen_Requirement_::_FacultativeCell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_SporulatingTemperature_Range_::_ThermophileTemperature_Optimum_::_55_CGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Host,_Intestinal_microfloraPhenotypes_::_Acidophile##Metadata-END## NA 01-MAY-2009 Bacillus_coagulans_36D1_ctg473,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_coagulans_C1P798_BACCO.gb Bacillus_rRNA_group_1 229325521 Unpublished NA AAWV02000001 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1386 NA genomic_DNA NA 36D1 NA Bacillus_coagulans_Hammer_1915_(Approved_Lists_1980)_emend._De_Clerck_et_al._2004 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 345219 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus Sequencing_of_the_draft_genome_and_assembly_of_Bacillus_coagulans_36D1 NA AAWV02000001.1 TTGAATCAGACGATCGGGCATCAGTTGGACAGACTGTCAGTAGGAAAAGTGCAACGACGGGCAACCATGGTAATTGGAATGGGATTATTTTTTGATTTTTTTGAGTTATTTCTTGCAGGGGTGCTCTCCAGTGTATTAGGTGAAGAATTTCATGTCTCTGCTTCACTTATGCCTTTGCTGCTGGGCTCCAGCTTTTTGGGGATGTTTATCGGGGCTATTTTCCTTTGCCATATTGCGGACCGTTACGGCAGAAAGCGGGCGTTTATGCTCAATATCGGCATTTATAGTCTTTTTACTATTTTCATTGCCTTTAGCCCGAATGTCGGCACGGTCATTTTTTTCCGGTTCCTGGCAGGAATGGGCCTGGGCGCGCAGCCGGCGTTATGTGATACATATTTAAGCGAATTGATTCCGTCGGTAAAACGCGGGAAATATATTGCCTGGGCGTATACGCTTGGTTTTCTCGCCGTTCCTGTTGAAGGATTTCTTTCCCGTGTCCTTGTACCTTTAAGCCCAATGGGATTGGATGGATGGAGATGGGTGTTCCTGCTTGGGGCGGCAGGGGGTGTTTTCGTCTTGATAGCGGCGCGGTCGCTTCCGGAGTCTCCGCGCTGGCTTGCCACTAAAGGAAGAATGCAGGAAGCAGTTGCATTATTGGAGAGATTTCAGGAAGGAAAGAAAGAGGCCGGGATGGTTTCAAAATTGCAATCTGAGCCTGCAGATCAAACGCCAAAGGGAAGTACTTTGAGTGCGGTCTTTCAAAAAAGATTATGGAAAAGTACGGTCATGCTTTACATTTTTCAAATTTTCCAAACGATTGGCTACTACGGCTTTGGGACGCTCGCACCGCTTGTACTCGCATCAAAGGGCTACACCGTCACGCATTCACTGGAGTATATTGCCTTGTCATTTATCGGCTACCCGCTCGGATCATTACTTTCTGTTCCGCTTATCGAAAAAATGGACCGTAAATGGCTGGTGTGCTTTTCCGCTGTTTGTATGGGTGTATTTGGCGTTTTATTTGGGATCGGCGGCTCGCCTTTTCTGGTCATTGTATTTGGATTTGCCTATACACTTTGCAGCAATATCTTTTCAAATGCTTTCCACGTACTGCAGGCGGAAATCTTTCCAACTGAAATCCGTGCGAGTGCTACCGGAATGGCATACAGCATCAGCCGCATTATGAGCGGCCTCATGCCGTTTATGCTGCTCCCGGTACTGGAAAATGAAGGTGCAACAGCGATGTTTATTATTGTTGCAATAGCAATGCTGATTGTCGTATTGGATATCGCACTACTGGCGCCAAAAACGACAGGACGTTCACTCGAAAATATAGAGAGTCTATCTGAACCGCAACTTTTTGGAAAAAACAGGGTTCACCTTTAA > 149 BcoaDRAFT_4347 TIGRFAM:_sugar_transporter;_PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bsu:BSU35830_hypothetical_protein sugar_transporter EEN91887.1 11 MKFKINNGLIYFFGALGGLLFGYDTGVISGALLFIKNDLHLTSWTEGIVVSSILFGCMIGAAISGAMSDRWGRKKVVLIAASVFCIGALGTALAPNTGVLILFRVILGLAVGSASTLVPMYLSEMAPTSIRGALSSLNQLMIMTGILLAYIINYVFAATGSWRWMLGFALIPGLLMLIGMLFLPESPRWLLKQGKEPEARTILNYMRKGHGVEEEIREIKQANELEKNQGGFSEVKQAWVRPALIAGIGLAVFQQIIGCNTVLYYAPTTFTNVGLGASAAILGTVGIGIVNVIITAIAVLIIDKVGRKPLLLIGNAGMSLALFVLGIVNALLGPSTAASWTTVICLAVYIAFFSLSWGPVVWVMLSEIFPLKIRGIGMGIGSVTNWLANLIVSLTFPKLIEQFGISTMFIIYGIMGVLAFIFVTRKVSETKGKSLEQIEIDLRQQAEHKKFNFSQSIQK Bacillus/Lactobacillus/Streptococcus_group Bacillus_coagulans_36D1 Bacillus_coagulans_36D1 AAWV02000001 740458..741837 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Chertkov,O.,_Brettin,T.,_Han,C.,_Detter,C.,_Pitluck,S.,_Patel,M.,_Ou,M.,_Rhee,M.S.,_Harbrucker,R.,_Ingram,L.O._and_Shanmugam,K.T. NA 0:1380 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4001342Source_DNA_and_Bacteria_available_from_K._Shanmugam_(shan@ufl.edu)Contacts:_K._Shanmugam_(shan@ufl.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)We_are_labeling_this_project_as_Permanent_Draft._No_further_work_onthis_project_is_planned_for_now.This_WGS_project_has_been_superceded_by_the_complete_genome_in(non-WGS)_GenBank_record_CP003056.##Metadata-START##Organism_Display_Name_::_Bacillus_coagulans_36D1GOLD_Stamp_ID_::_Gi01001Greengenes_ID_::_207475Sequencing_Depth_::_9.5xBody_Sample_SubSite_::_Intestinal_tractOxygen_Requirement_::_FacultativeCell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_SporulatingTemperature_Range_::_ThermophileTemperature_Optimum_::_55_CGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Host,_Intestinal_microfloraPhenotypes_::_Acidophile##Metadata-END## NA 01-MAY-2009 Bacillus_coagulans_36D1_ctg473,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_coagulans_C1PBB9_BACCO.gb Bacillus_rRNA_group_1 229325521 Unpublished NA AAWV02000001 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1380 NA genomic_DNA NA 36D1 NA Bacillus_coagulans_Hammer_1915_(Approved_Lists_1980)_emend._De_Clerck_et_al._2004 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 345219 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus Sequencing_of_the_draft_genome_and_assembly_of_Bacillus_coagulans_36D1 NA AAWV02000001.1 ATGAAATTTAAAATCAATAATGGCTTGATTTACTTTTTTGGCGCTTTGGGCGGATTATTATTTGGATATGATACCGGTGTAATTTCCGGCGCCCTTCTTTTTATCAAAAATGATTTACACCTGACTTCCTGGACAGAAGGAATTGTCGTCAGCTCCATTCTGTTTGGCTGTATGATCGGTGCCGCAATTAGCGGAGCAATGTCTGACAGATGGGGAAGAAAAAAAGTCGTTCTCATCGCAGCATCTGTTTTCTGTATTGGAGCATTAGGTACCGCGTTGGCACCAAATACTGGTGTTTTAATTCTTTTCCGGGTCATATTGGGCCTGGCAGTCGGAAGTGCCTCTACCCTTGTTCCAATGTATTTATCAGAAATGGCACCAACTTCAATCCGCGGTGCATTGTCCAGTTTGAATCAACTGATGATCATGACAGGTATTTTATTGGCTTATATCATTAACTATGTTTTTGCTGCTACAGGAAGCTGGCGCTGGATGCTCGGTTTTGCGCTGATCCCGGGTTTGCTGATGTTAATCGGTATGCTTTTTTTACCAGAAAGCCCACGTTGGCTTTTGAAACAGGGAAAAGAACCTGAAGCAAGAACGATTCTCAATTATATGAGAAAAGGGCACGGCGTTGAAGAAGAAATACGTGAGATCAAGCAAGCAAACGAACTTGAAAAAAATCAGGGCGGTTTTAGTGAAGTAAAACAAGCGTGGGTGCGGCCAGCATTAATTGCCGGCATAGGATTGGCAGTCTTTCAACAGATCATTGGCTGCAATACCGTTCTATATTACGCACCTACCACTTTTACAAACGTCGGGCTAGGAGCATCTGCAGCTATTCTGGGTACAGTAGGCATCGGGATTGTTAACGTGATCATTACAGCTATTGCAGTTCTTATCATCGATAAAGTTGGTAGAAAACCACTTTTATTAATCGGTAATGCCGGTATGTCTCTTGCCTTATTTGTACTGGGGATTGTAAACGCTTTACTTGGCCCGTCAACTGCTGCCAGTTGGACAACGGTGATTTGCCTGGCTGTTTACATTGCATTTTTCTCCCTCAGCTGGGGACCGGTCGTATGGGTGATGCTCTCTGAAATCTTTCCGCTTAAAATTCGCGGCATAGGCATGGGGATTGGCAGTGTTACAAACTGGCTTGCAAACTTAATTGTCTCCTTAACTTTTCCTAAATTGATTGAACAATTTGGCATTTCAACCATGTTTATTATATATGGCATTATGGGTGTTCTGGCGTTCATCTTTGTAACCCGAAAAGTATCCGAGACAAAAGGAAAAAGCCTTGAGCAAATTGAGATTGATCTCAGACAACAAGCTGAGCATAAAAAATTTAACTTTTCTCAATCCATACAAAAATAA > 150 BMQ_pBM70039 NA MFS_transporter,_sugar_porter_(SP)_family YP_003565844.1 11 MENLKLPNDYSAQTEQVKEKDSKKFLKLVTIVSTFGGLLFGYDTGVINGALPFMARPDQLNLNPFTEGLVASSLVLGAAFGSIFGGRLSDNKGRRKVILYLAILFFFSAAGCVIAPNTTIMVAFRFLLGLAVGGSSVVIPSYLAEIAPTDRRGILVTQNELMIVTGQFLAYICNAVIGNVFGDAGHAWRYMLVIATLPALALWIGVLILPESPRWLASKGKMTDALKILQKIRSESIAQQELKDIKAHISEEQKIEKMSFKDLRTPWIRRIVVLGIFIGSISQLVGINSIMYYGTQILENSGFGTKTALIANVANGLIAVVAVIVGMSLLNKVNRKPMLLTGLTGVTVALITIGISALILTGSPVLPYVVLSMTVVYLAFFQGAIGPMVWLILAEIFPVRLRGIGMGFAVLFLWFCNFLVGLFFPLLLDVIGLSSTFFLFAAFGIVGIIYVAKFLPETRGLSLEQIEANFKKES Bacillus/Lactobacillus/Streptococcus_group Bacillus_megaterium_QM_B1551 Bacillus_megaterium_QM_B1551 NC_014023 32998..34422 Eppinger,M.,_Bunk,B.,_Johns,M.A.,_Edirisinghe,J.N.,_Kutumbaka,K.K.,_Koenig,S.S.,_Creasy,H.H.,_Rosovitz,M.J.,_Riley,D.R.,_Daugherty,S.,_Martin,M.,_Elbourne,L.D.,_Paulsen,I.,_Biedendieck,R.,_Braun,C.,_Grayburn,S.,_Dhingra,S.,_Lukyanchuk,V.,_Ball,B.,_Ul-Qamar,R.,_Seibel,J.,_Bremer,E.,_Jahn,D.,_Ravel,J._and_Vary,P.S. NA 0:1425 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001990.Bacteria_available_from_the_Bacillus_Genetic_Stock_Center,(http://www.bgsc.org/),_The_Ohio_State_University,_776_BiologicalSciences_Building,_484_West_12th_Avenue,_Columbus._Ohio_43210_underinventory_No._7A116_or_from_Patricia_S._Vary_(pvary@niu.edu),_Dept.of_Biological_Sciences,_Northern_Illinois_University,_DeKalb,_IL60115.COMPLETENESS:_full_length. NA 25-JAN-2012 Bacillus_megaterium_QM_B1551_plasmid_pBM700,_complete_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_megaterium_D5E456_BACMQ.gb Bacillus_rRNA_group_1 294508916 J._Bacteriol._193_(16),_4199-4213_(2011) NA NC_014023 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 21705586 1425 NA genomic_DNA NA QM_B1551 NA Bacillus_megaterium_de_Bary_1884 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 545693 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus Genome_sequences_of_the_biotechnologically_important_Bacillus_megaterium_strains_QM_B1551_and_DSM319 NA NC_014023.1 TCAGCTTTCTTTTTTAAAGTTAGCCTCGATTTGTTCTAATGAAAGACCTCTTGTCTCTGGTAAGAATTTCGCTACATATATTATTCCCACAATACCAAATGCGGCGAATAGGAAAAATGTTGATGACAAACCTATTACATCTAGTAGAAGAGGGAAGAATAATCCTACTAAAAAATTGCAAAACCATAAAAATAATACAGCGAATCCCATACCAATACCACGTAAACGAACAGGGAAGATTTCAGCAAGTATGAGCCATACCATCGGGCCAATAGCTCCTTGGAAAAAGGCTAAGTATACTACTGTCATTGATAATACTACATATGGCAGCACCGGAGATCCCGTAAGTATTAGAGCAGAAATTCCAATCGTAATAAGTGCGACTGTAACACCTGTTAAACCTGTAAGTAACATGGGTTTTCTGTTCACTTTATTTAGTAATGACATACCCACAATAACTGCTACAACAGCAATTAATCCGTTTGCTACATTTGCAATTAATGCTGTTTTTGTACCAAAACCAGAATTTTCAAGAATTTGTGTTCCATAATACATAATAGAGTTGATACCCACTAGTTGTGATATAGAGCCAATAAAAATACCAAGAACCACAATACGGCGAATCCAAGGTGTCCTTAAATCTTTGAAACTCATTTTTTCTATTTTTTGCTCTTCTGAAATATGTGCTTTTATATCCTTCAATTCTTGCTGAGCGATACTCTCACTACGAATCTTTTGTAGGATCTTCAATGCGTCGGTCATTTTTCCTTTTGATGCTAACCATCGGGGACTTTCAGGTAAAATAAGTACTCCAATCCAAAGCGCCAAGGCTGGCAATGTCGCAATCACCAACATATAACGCCAAGCATGTCCTGCATCTCCAAAAACATTACCAATAACTGCATTACATATATAAGCAAGGAACTGTCCAGTAACAATCATCAGTTCATTTTGTGTAACCAAAATACCACGCCTGTCCGTTGGTGCTATTTCAGCAAGATATGAGGGGATAACCACAGAAGAACCGCCAACAGCAAGTCCCAATAGAAAACGAAAAGCAACCATTATGGTTGTATTTGGTGCTATGACACACCCAGCTGCAGAAAAGAAAAATAATATCGCAAGGTACAAAATAACCTTCCTACGTCCTTTATTATCGGATAAGCGTCCGCCAAATATGGAGCCAAACGCAGCACCTAATACGAGAGAACTTGCTACTAAACCCTCAGTGAAAGGATTTAAGTTTAATTGGTCAGGCCGGGCCATAAATGGAAGCGCCCCATTAATAACCCCTGTATCATATCCGAATAATAGTCCTCCAAACGTGGATACAATGGTGACCAATTTTAAAAACTTTTTTGAGTCCTTTTCCTTGACCTGTTCCGTTTGAGCTGAGTAATCATTAGGCAACTTGAGATTTTCCAC > 151 bmyco0002_7820 similar_to_alpha-ketoglutarate_transporter_PRK10406;_similar_to_Alpha-ketoglutarate_transporter,_MFS_superfamily_protein_of_Bacteria_UniRef_RepID=Q0SBC8_RHOSR Alpha-ketoglutarate_transporter,_MFS_super EEM06649.1 11 MIFFKLLQLNREVLIMSQSTNRTNTRRITGNIFKGSVGNLIEWYDWYVYSAFAVYFSAEFFPKGDSTSQLLNTAAIFAVGFLMRPLGSLLMGRYADRHGRRAALTLSITIMAGGSLIIACTPGYSTIGIMAPIILVLARLLQGLSLGGEYGTSATYLSEMASSGRRGFYSSFQYVTLVAGQLVALGVQIILQQILSEPDMKSWGWRIPFIIGAMGAVAVLWLRRTMDESEQFSKMGSESRESAGTIRALMKHPKAVLTVVGLTLGGTVAFYTYTTYLQKFMVNTVGLPKEVVSWINFIALLVFVVLQPLAGMLSDRIGRRPLLIGFGILGTLLTVPLFLIMEQTKYPIVAFLLMMVGLIIVTGYTSINAIVKAELFPTEIRALGVGFPYAITVAVFGGTAEFIALWLKSIGLESLFYFYVAGCIAISFITYWRMAESSKTSHIEAELTDENTLAAHKSGSRHS Bacillus/Lactobacillus/Streptococcus_group Bacillus_mycoides_Rock1-4 Bacillus_mycoides_Rock1-4 ACMV01000051 13665..15056 Read,T.D.,_Akmal,A.,_Bishop-Lilly,K.,_Chen,P.E.,_Cook,C.,_Kiley,M.P.,_Lentz,S.,_Mateczun,A.,_Nagarajan,N.,_Nolan,N.,_Osborne,B.I.,_Pop,M.,_Sozhamannan,S.,_Stewart,A.C.,_Sulakvelidze,A.,_Thomason,B.,_Willner,K._and_Zwick,M.E. NA 0:1392 Bacteria_available_from_BDRDGenome_Coverage:_13.4XSequencing_Technology:_454. NA 30-APR-2009 Bacillus_mycoides_Rock1-4_contig00504,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_mycoides_C3AI56_BACMY.gb Bacillus_rRNA_group_1 228757399 Unpublished NA ACMV01000051 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1392 NA genomic_DNA NA Rock1-4 NA Bacillus_mycoides_Flugge_1886 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 526998 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Annotation_of_the_Bacillus_mycoides_Rock1-4_genome NA ACMV01000051.1 TTAAGAGTGTCGTGAACCAGACTTGTGAGCAGCTAACGTATTTTCATCGGTCAGTTCGGCCTCGATGTGAGAGGTTTTAGATGACTCAGCCATACGCCAATAAGTGATGAAGCTTATGGCAATGCAGCCAGCTACGTAGAAGTAGAAGAGCGACTCGAGCCCAATACTTTTCAGCCATAATGCGATGAACTCCGCCGTTCCGCCGAACACTGCAACAGTGATTGCGTAAGGGAATCCCACGCCAAGGGCACGGATTTCAGTTGGGAAGAGCTCAGCTTTCACGATTGCATTGATGGAAGTATAACCGGTGACAATAATGAGACCTACCATCATAAGCAAGAAAGCAACGATAGGGTACTTCGTTTGCTCCATGATTAGGAACAGTGGGACTGTCAGTAAAGTTCCGAGTATGCCGAAACCAATCAATAGCGGACGTCGTCCAATCCGGTCGGATAACATACCAGCGAGTGGTTGAAGTACGACGAATACTAATAAGGCAATAAAGTTAATCCAGCTAACAACTTCCTTAGGAAGGCCCACAGTATTCACCATGAACTTCTGTAAATACGTCGTGTAAGTATAGAATGCAACAGTCCCGCCGAGCGTTAGCCCAACGACTGTTAATACTGCCTTAGGATGTTTCATCAGAGCACGAATGGTTCCAGCACTCTCACGGCTTTCAGAACCCATTTTTGAGAATTGCTCCGATTCATCCATCGTGCGACGCAGCCACAATACAGCTACTGCTCCCATTGCTCCGATGATGAAGGGAATACGCCAGCCCCAAGATTTCATATCCGGCTCGCTGAGTATTTGCTGGAGGATGATCTGAACACCAAGTGCTACTAGCTGTCCCGCAACAAGTGTGACATACTGGAAGCTCGAGTAGAAACCACGTCGGCCGCTGCTTGCCATCTCGGATAAATATGTAGCCGAAGTTCCATATTCTCCACCTAATGACAAACCTTGAAGCAGACGTGCGAGAACGAGAATAATAGGGGCCATTATACCAATGGTGCTATAACCTGGGGTACAGGCAATGATTAACGAACCACCGGCCATGATGGTGATAGAAAGCGTCAATGCAGCGCGACGACCATGACGATCGGCATAACGGCCCATCAGTAGGCTTCCTAGCGGGCGCATCAAGAAGCCAACGGCGAAGATTGCTGCCGTGTTAAGCAGTTGACTCGTCGAATCTCCCTTAGGGAAGAACTCTGCTGAGAAATACACGGCGAAAGCAGAATAGACGTACCAGTCGTACCATTCAATCAGATTTCCAACTGAACCTTTGAAGATGTTTCCTGTTATGCGCCTTGTATTTGTGCGATTGGTGGATTGAGACATGATTAAAACCTCCCTATTTAATTGAAGTAATTTGAAAAATATCAT > 152 BpOF4_10620 COG0477_Permeases_of_the_major_facilitator_superfamily putative_MFS_major_facilitator_transporter YP_003427069.1 11 MIREQQEENRPLYRLIVLIIMVAIAGFAQGMLLPLLAIMLEDAGVSSSLNGLNAAALYIGVLLASPFIEHPVRKYGYKPVITIGLILMITSLLLLPVWQAFWFWFILRIIIGIGDNMVHFATQVWITTTSTQENRGRNISLYGLAFGLGFGAGPFMTRLLAINEWLPFLISAGLSLLAWLLILQMRNEFPLSDLETGSKLSTWSRYKEVFKLAWFAFLPAFGYGFLEASLHGNYPVYALRSGMTIELVSILLPAFVIGGLITQLPLGLLSDRIGRKRILLILSALGAFCFFAMITFESSSTILFILFILAGAFVGSFFSLGVMYLADLIPAHLLPTGNVMMAISFGVGSMTGPLIGGVFIDIFERGSIYYSIGGMLLFILVTGTLFKSAQTNTNQEVTLSK Bacillus/Lactobacillus/Streptococcus_group Bacillus_pseudofirmus_OF4 Bacillus_pseudofirmus_OF4 NC_013791 564931..566136 Janto,B.,_Ahmed,A.,_Ito,M.,_Liu,J.,_Hicks,D.B.,_Pagni,S.,_Fackelmayer,O.J.,_Smith,T.A.,_Earl,J.,_Elbourne,L.D.,_Hassan,K.,_Paulsen,I.T.,_Kolsto,A.B.,_Tourasse,N.J.,_Ehrlich,G.D.,_Boissy,R.,_Ivey,D.M.,_Li,G.,_Xue,Y.,_Ma,Y.,_Hu,F.Z._and_Krulwich,T.A. NA 0:1206 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001878.On_Jan_5,_2011_this_sequence_version_replaced_gi:288553026.Genome_was_manually_curated_based_on_annotation_generated_by_theNCBI_Prokaryotic_Genomes_Automatic_Annotation_Pipeline_Group.Information_about_the_Pipeline_can_be_found_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.COMPLETENESS:_full_length. NA 25-JAN-2012 Bacillus_pseudofirmus_OF4_chromosome,_complete_genome. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_pseudofirmus_D3FUK7_BACPE.gb Bacillus_rRNA_group_1 316994385 Environ._Microbiol._13_(12),_3289-3309_(2011) NA NC_013791 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 21951522 1206 NA genomic_DNA NA OF4 NA Bacillus_pseudofirmus_Nielsen_et_al._1995 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398511 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus Genome_of_alkaliphilic_Bacillus_pseudofirmus_OF4_reveals_adaptations_that_support_the_ability_to_grow_in_an_external_pH_range_from_7.5_to_11.4 NA NC_013791.2 TTATTTTGATAACGTAACTTCTTGGTTTGTATTCGTTTGAGCAGACTTAAATAACGTTCCTGTTACTAAGATGAAGAGGAGCATGCCGCCAATCGAATAATAAATACTGCCTCTTTCAAAGATATCAATAAACACACCCCCGATAAGCGGACCTGTCATACTTCCTACGCCAAAACTGATCGCCATCATCACGTTTCCAGTCGGCAAAAGGTGGGCAGGGATAAGATCGGCTAAGTACATAACTCCTAGAGAAAAGAAGGAGCCGACAAACGCTCCAGCCAAAATAAATAAGATAAATAGGATTGTGCTAGATGATTCAAAAGTAATCATTGCAAAAAAACAGAAGGCACCAAGGGCGGATAGAATTAATAAGATTCGTTTTCTGCCGATACGATCACTAAGAAGACCCAGCGGCAATTGAGTAATCAGACCCCCGATTACAAAGGCTGGCAAAAGAATGGATACGAGTTCTATTGTCATACCTGACCTAAGCGCATAAACAGGATAATTCCCGTGAAGAGATGCTTCAAGAAAGCCATATCCAAAGGCCGGCAGAAAGGCAAACCATGCAAGTTTGAATACTTCCTTATAACGACTCCACGTTGAAAGCTTGCTTCCGGTTTCCAAGTCAGATAAAGGAAACTCGTTTCTCATTTGAAGAATTAATAACCATGCGAGTAAACTAAGGCCGGCAGATATTAAAAATGGCAGCCATTCGTTGATGGCTAGAAGCCTAGTCATAAATGGACCTGCTCCAAACCCTAACCCAAAAGCGAGACCGTACAATGATATATTTCGACCACGGTTTTCCTGTGTACTGGTCGTTGTAATCCATACTTGTGTAGCAAAATGAACCATATTATCGCCGATGCCAATAATGATTCTAAGGATAAACCAAAACCAAAAAGCCTGCCATACAGGAAGTAATAAAAGAGAGGTGATCATAAGAATTAAACCGATCGTAATGACAGGCTTATATCCATACTTCCTTACAGGGTGCTCGATAAAAGGCGAAGCAAGCAGAACACCAATATAAAGAGCTGCTGCATTTAAGCCGTTAAGGGATGATGAGACGCCGGCATCTTCTAGCATAATAGCCAAAAGAGGCAAGAGCATTCCTTGGGCAAAGCCTGCTATGGCAACCATAATTATTAAGACGATTAAGCGGTATAAAGGGCGGTTTTCCTCTTGTTGTTCACGTATCAT > 153 HMPREF1013_01741 NA hypothetical_protein EFV78056.1 11 MEKKLEKKVLIASLIGSSIEWFDYFLYGTVAALVFNQMFFHSDDPAVGLMLAYASFALAFFIRPLGGVIFSHIGDKIGRKKTLVLTLSLMGGATVLMGFLPTYDNIGTAAPILLIILRLIQGIGLGGEWGGALLLAVEYAPKNRRGFFGSIPQMGVTIGMLLGTLALSIMTLLPEEAFLSWGWRVPFILSALLVFFGLWIRKGIDETPSFKKAQEKGEIAKIPFVETMRSHWKEVLIAVGAKVVETAPFYIFGTFIVSYATTQLGFSRTVTLNAVTIATIITTILIPIMGKLSDKVGRKKLYVGGTVLMMLYAFPYFWLLHQGSAFLLVVATILGLGIIWAPITAVLGTMFSEIFKSNVRYTGITLGYQIGAALAGGTAPLVATALLNAYDNSYVPVALYIMLAAAISLIAISSVRDRSNQDLDSDLPGDDAFHTGFGQTDQKA Bacillus/Lactobacillus/Streptococcus_group Bacillus_sp._2_A_57_CT2 Bacillus_sp._2_A_57_CT2 ACWD01000025 78776..80110 Earl,A.,_Ward,D.,_Feldgarden,M.,_Gevers,D.,_Daigneault,M.,_Strauss,J.,_Allen-Vercoe,E.,_Young,S.K.,_Zeng,Q.,_Gargeya,S.,_Fitzgerald,M.,_Haas,B.,_Abouelleil,A.,_Alvarado,L.,_Arachchi,H.M.,_Berlin,A.,_Brown,A.,_Chapman,S.B.,_Chen,Z.,_Dunbar,C.,_Freedman,E.,_Gearin,G.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Howarth,C.,_Larson,L.,_Lui,A.,_MacDonald,P.J.P.,_Mehta,T.,_Montmayeur,A.,_Murphy,C.,_Neiman,D.,_Pearson,M.,_Priest,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_White,J.,_Yandava,C.,_Nusbaum,C._and_Birren,B. NA 0:1335 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Source_DNA_provided_by_Daigneault,_M.,_Strauss,_J.C.,_andAllen-Vercoe,_E._(Molecular_and_Cellular_Biology,_University_ofGuelph,_Guelph,_Ontario,_N1G_2W1,_Canada).Bacteria_provided_by_Daigneault,_M.,_Strauss,_J.C.,_andAllen-Vercoe,_E._(Molecular_and_Cellular_Biology,_University_ofGuelph,_Guelph,_Ontario,_N1G_2W1,_Canada).Please_be_aware_that_the_annotation_is_done_automatically_withlittle_or_no_manual_curation.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_v._2.1-PreRelease-4/28/2009Assembly_Name_::_Bacillus_sp_2_A_57_CT2_V1Genome_Coverage_::_19xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 11-JAN-2011 Bacillus_sp._2_A_57_CT2_cont1.25,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_sp_E5WH36_9BACI.gb Bacillus_rRNA_group_1 317397277 Unpublished NA ACWD01000025 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1335 NA genomic_DNA NA 2_A_57_CT2 NA Bacillus_sp._2_A_57_CT2 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 665959 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus The_Genome_Sequence_of_Bacillus_sp._strain_2_A_57_CT2 NA ACWD01000025.1 CTAAGCTTTTTGGTCGGTTTGTCCGAAGCCTGTATGGAATGCATCATCTCCTGGAAGATCAGAATCAAGGTCCTGATTGCTTCGGTCACGGACGGATGAAATCGCAATCAAAGAGATGGCAGCTGCAAGCATGATGTATAACGCTACAGGAACATAGGAATTGTCATACGCATTCAGCAGGGCAGTTGCAACGAGAGGAGCGGTTCCTCCTGCCAGAGCGGCTCCTATTTGATAGCCCAGTGTGATGCCGGTATAGCGGACATTCGACTTAAATATTTCTGAAAACATAGTCCCAAGTACAGCGGTAATTGGAGCCCAGATGATCCCGAGACCCAATATGGTAGCCACAACCAGCAGAAACGCCGAACCCTGATGAAGCAGCCAGAAGTATGGAAAGGCGTAAAGCATCATCAGGACCGTTCCGCCCACATATAGCTTTTTCCGGCCAACTTTGTCAGACAGTTTTCCCATGATCGGGATTAGTATTGTAGTAATTATCGTTGCAATCGTAACGGCATTCAGAGTAACAGTGCGTGAGAATCCAAGCTGTGTTGTCGCATAGGAAACAATAAAGGTTCCGAAAATATAAAATGGCGCTGTCTCCACCACTTTTGCGCCGACTGCAATCAATACTTCCTTCCAATGGCTGCGCATGGTTTCCACAAACGGAATCTTGGCGATTTCGCCTTTCTCCTGGGCCTTTTTAAAGGATGGTGTTTCATCAATCCCTTTGCGGATCCATAAGCCAAAAAAGACAAGCAGGGCACTTAGGATGAACGGGACACGCCATCCCCATGATAAAAAGGCTTCCTCAGGCAATAAAGTCATGATGGATAAGGCAAGCGTTCCAAGGAGCATTCCGATGGTGACACCCATTTGCGGAATGCTTCCAAAAAAGCCGCGCCGATTTTTTGGGGCATACTCAACAGCAAGCAGCAATGCGCCGCCCCATTCTCCTCCAAGGCCAATACCTTGTATTAAGCGTAAAATGATCAGCAGGATCGGTGCTGCCGTGCCAATATTGTCGTAGGTAGGCAAAAAGCCCATGAGGACAGTTGCACCGCCCATAAGGGATAGTGTGAGGACAAGAGTCTTCTTTCTGCCGATTTTATCGCCGATGTGGCTGAAAATTACCCCGCCAAGCGGGCGGATAAAGAAAGCAAGTGCGAAAGAGGCATATGCCAGCATCAAACCGACAGCCGGGTCATCGCTATGAAAAAACATTTGATTAAATACAAGTGCAGCAACCGTCCCGTACAAAAAGTAATCAAACCATTCGATGGAACTTCCGATCAGGCTTGCGATCAGCACTTTCTTTTCTAATTTCTTTTCCAT > 154 BSU6633_03827 COG0477_Permeases_of_the_major_facilitator_superfamily putative_carbohydrate_transporter EFG93338.1 11 MKKQSNIWLYFFGALGGALYGYDTGVISGAILFMKKDLGLNAFTEGLVVSSLLVGAILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADAEAWRWMLGLAAVPSLLLLIGILFMPESPRWLFTNGEENKAKKVLEKLRGTKDIDQEIHDIQEAEKQDEGGLKELFDPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNVLMTLIAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNTAAASWTTVICLGVFIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIGIMAFLFVRFKVTETKGKSLEEIEQDLRDKNGQGGSAGKQQTVQT Bacillus/Lactobacillus/Streptococcus_group Bacillus_subtilis_subsp._spizizenii_ATCC_6633 Bacillus_subtilis_subsp._spizizenii_ATCC_6633 ADGS01000007 19909..21282 Metcalf,W.W.,_Zhang,J.K._and_Borisova,S.A. NA 0:1374 Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation.##Genome-Assembly-Data-START##Assembly_Method_::_Newbler_assembler_v._1.1.02.15Genome_Coverage_::_30xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 17-MAY-2010 Bacillus_subtilis_subsp._spizizenii_ATCC_6633_contig00007,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_subtilis_D5MX41_BACSU.gb Bacillus_rRNA_group_1 296152448 Unpublished NA ADGS01000007 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1374 NA genomic_DNA NA ATCC_6633 NA Vibrio_subtilis NA forward NA NA NA NA NA NA Bacillus_subtilis_subsp._spizizenii_Nakamura_et_al._1999 NA NA NA prokaryotes NA 703612 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus The_complete_genome_sequence_of_the_gram-positive_bacterium_Bacillus_subtilis_ATCC_6633 NA ADGS01000007.1 ATGAAAAAGCAGTCCAATATATGGCTTTATTTTTTCGGCGCTCTTGGAGGCGCGTTATACGGCTATGATACCGGAGTGATTTCCGGAGCTATTTTATTTATGAAAAAGGACTTAGGCTTGAATGCCTTTACGGAAGGACTTGTTGTCAGCTCCTTATTGGTTGGGGCGATATTAGGCTCAGGAGCGGCCGGCAAGCTAACTGACCGTTTCGGAAGAAAAAAAGCGATTATGGCGGCCGCGCTGCTGTTTTGTATAGGAGGTCTGGGTGTGGCGCTCGCCCCGAATACGGGAGTCATGGTGCTGTTTCGCATCATTTTGGGACTTGCAGTCGGAACATCGACGACGATCGTGCCGCTCTATTTATCTGAACTCGCTCCAAAACATAAGCGCGGGGCGCTGTCATCTCTGAATCAGCTGATGATCACGGTCGGCATCCTTCTATCTTACATTGTCAATTATATATTTGCCGATGCCGAAGCGTGGCGCTGGATGCTTGGATTGGCTGCTGTGCCATCGCTGCTTTTGCTCATTGGCATTTTGTTCATGCCCGAGAGTCCGCGCTGGCTGTTTACGAATGGCGAAGAAAATAAAGCGAAAAAGGTTCTCGAAAAATTGCGTGGCACAAAAGATATTGATCAGGAAATACATGATATTCAAGAAGCGGAAAAGCAGGATGAAGGCGGCCTGAAGGAGCTGTTCGATCCATGGGTGCGTCCCGCTCTGATTGCCGGCCTGGGACTGGCGTTTCTGCAGCAATTTATCGGAACAAATACGATCATCTATTATGCGCCAAAGACCTTTACAAACGTCGGATTCGGAAACTCTGCATCGATTTTAGGAACGGTCGGAATCGGCACAGTCAATGTTCTCATGACGTTAATAGCGATTAAAATCATCGACAAGATCGGAAGAAAGCCGCTATTGTTATTCGGGAATGCCGGGATGGTGATCAGCTTAATCGTTCTCGCGCTGGTGAATCTCTTTTTCGATAATACCGCGGCTGCCTCATGGACGACTGTCATTTGCCTAGGTGTGTTTATCGTTGTCTTTGCGGTCAGCTGGGGCCCGGTTGTCTGGGTGATGCTTCCTGAATTGTTCCCGCTCCATGTCAGAGGAATCGGTACCGGTGTATCGACTTTGATGCTGCACGTTGGGACACTGATTGTTTCACTCACCTATCCAATATTAATGGAAGCGATCGGTATCAGTTATTTATTCCTGATTTATGCCGCGATCGGTATCATGGCGTTCTTATTTGTCCGGTTTAAAGTGACAGAGACGAAGGGAAAAAGCCTTGAAGAAATTGAGCAAGATTTAAGGGACAAAAACGGACAGGGAGGATCTGCCGGAAAACAGCAGACTGTCCAAACATAA > 155 BSUW23_02830 NA sugar_transporter YP_003864933.1 11 MTSKKAYISLIYFFGALGGLLFGYDTGVISGALLFIREDMELTPFLEGLVVSGVLIGALVGAAFCGRFSDRYGRKKTIIWLGVLFTQLEPLEQAWLIISEYYCYSE Bacillus/Lactobacillus/Streptococcus_group Bacillus_subtilis_subsp._spizizenii_str._W23 Bacillus_subtilis_subsp._spizizenii_str._W23 NC_014479 575707..576027 Zeigler,D.R. NA 0:321 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002183.Bacteria_available_from_the_Bacillus_Genetic_Stock_Center.COMPLETENESS:_full_length. NA 26-JAN-2012 Bacillus_subtilis_subsp._spizizenii_str._W23_chromosome,_complete_genome. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_subtilis_E0U4G6_BACPZ.gb Bacillus_rRNA_group_1 305672698 Microbiology_(Reading,_Engl.)_157_(PT_7),_2033-2041_(2011) NA NC_014479 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 21527469 321 NA genomic_DNA NA W23 NA Vibrio_subtilis NA forward NA NA NA NA NA NA Bacillus_subtilis_subsp._spizizenii_Nakamura_et_al._1999 NA NA NA prokaryotes NA 655816 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus The_genome_sequence_of_Bacillus_subtilis_subsp._spizizenii_W23:_insights_into_speciation_within_the_B._subtilis_complex_and_into_the_history_of_B._subtilis_genetics NA NC_014479.1 ATGACATCCAAAAAGGCCTATATCAGTCTTATTTACTTTTTCGGGGCATTAGGAGGTTTGCTGTTCGGGTACGATACGGGTGTAATATCCGGCGCTCTGCTGTTTATAAGGGAAGACATGGAGCTGACCCCGTTTTTAGAAGGATTAGTTGTCAGTGGAGTGCTGATTGGTGCTTTAGTTGGCGCAGCCTTTTGCGGAAGATTTTCCGATCGTTATGGCAGGAAAAAAACCATCATCTGGCTGGGTGTGCTTTTTACACAATTGGAGCCATTGGAACAGGCTTGGCTCATAATATCGGAATATTATTGCTATTCAGAATAG > 156 bthur0014_8150 similar_to_alpha-ketoglutarate_transporter_PRK10406;_similar_to_Alpha-ketoglutarate_transporter,_MFS_superfamily_protein_of_Bacteria_UniRef_RepID=Q0SBC8_RHOSR Alpha-ketoglutarate_transporter,_MFS_super EEN04429.1 11 MAQVKSNRVAGNIFKGSVGNLIEWYDWYVYSAFAVYFSAEFFPKGDPTSQLLNTAAIFAVGFLMRPIGSLLMGRYADRHGRRAALTLSITVMAGGSLIIACTPSYESIGIMAPIILVLARLLQGLSLGGEYGTSATYLSEMASSGRRGFYSSFQYVTLVAGQMVALGVQIVLQQLLSEPDMKAWGWRIPFIIGAMGAVAVLWLRRTMDESEQFANIKSQKRESAGTVRALMKHPKAVLTVVGLTLGGTVAFYTYTTYLQKFMVNTVGLPKEVVSWINFVALLIFVVLQPIAGLLSDKIGRRPLLMAFGILGTLLTAPIFFFMEKTTEPIVAFLLMMVGLIIVTGYTSINAIVKAELFPTEIRALGVGLPYALTVAIFSGTAEFIALWLKSIGMESLFYFYVAGCIAISFITYWRMDESSKTSQIEAELGGGDTLVNNKSS Bacillus/Lactobacillus/Streptococcus_group Bacillus_thuringiensis_IBL_4222 Bacillus_thuringiensis_IBL_4222 ACNL01000030 9447..10769 Read,T.D.,_Akmal,A.,_Bishop-Lilly,K.,_Chen,P.E.,_Cook,C.,_Kiley,M.P.,_Lentz,S.,_Mateczun,A.,_Nagarajan,N.,_Nolan,N.,_Osborne,B.I.,_Pop,M.,_Sozhamannan,S.,_Stewart,A.C.,_Sulakvelidze,A.,_Thomason,B.,_Willner,K._and_Zwick,M.E. NA 0:1323 Bacteria_available_from_BDRDGenome_Coverage:_8.4XSequencing_Technology:_454. NA 30-APR-2009 Bacillus_thuringiensis_IBL_4222_contig00477,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_thuringiensis_C3IFJ5_BACTU.gb Bacillus_rRNA_group_1 228860004 Unpublished NA ACNL01000030 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1323 NA genomic_DNA NA IBL_4222 NA Bacillus_thuringiensis_Berliner_1915 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 527020 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Annotation_of_the_Bacillus_thuringiensis_IBL_4222_genome NA ACNL01000030.1 TTAACTAGACTTATTATTAACTAATGTATCCCCACCACCAAGCTCCGCCTCAATCTGCGAAGTCTTCGATGACTCATCCATGCGCCAATACGTAATAAAGCTGATCGCGATACATCCAGCTACGTAGAAGTAGAATAGTGATTCCATTCCGATACTCTTTAGCCATAATGCGATGAACTCAGCTGTTCCGCTGAATATCGCAACGGTTAGTGCATATGGTAAACCTACGCCTAGTGCGCGAATTTCAGTTGGGAAGAGTTCTGCTTTTACAATGGCGTTAATGGAAGTGTAACCAGTAACGATAATGAGACCGACCATCATAAGTAAGAACGCTACGATTGGTTCTGTCGTTTTTTCCATGAAGAAGAAGATTGGTGCTGTTAGTAACGTTCCGAGAATACCGAATGCCATTAATAGTGGGCGACGTCCAATTTTATCGGATAATAGCCCCGCAATTGGTTGAAGTACAACGAAAATAAGTAGTGCGACAAAGTTAATCCAGCTTACAACTTCTTTCGGAAGACCGACTGTGTTTACCATGAACTTTTGTAAATATGTTGTGTACGTATAAAATGCGACAGTACCTCCTAATGTTAGGCCGACTACTGTTAATACTGCTTTCGGGTGTTTCATAAGCGCGCGAACGGTTCCTGCGCTTTCGCGTTTTTGTGATTTTATGTTTGCGAATTGCTCCGACTCATCCATCGTGCGGCGAAGCCATAATACAGCTACTGCGCCCATCGCTCCAATAATGAACGGAATACGCCATCCCCAAGCTTTCATATCTGGTTCGCTTAGTAATTGCTGAAGAACAATTTGAACGCCTAACGCAACCATTTGCCCAGCAACGAGCGTTACATATTGGAAACTTGAATAAAAGCCGCGGCGACCACTACTAGCCATTTCAGATAAATATGTGGCAGAAGTTCCATACTCTCCCCCGAGTGATAACCCTTGTAGTAAACGGGCAAGAACTAAAATAATTGGTGCCATAATACCGATACTTTCGTAACTAGGTGTACAGGCGATAATTAAAGAACCACCGGCCATAACCGTAATCGAAAGTGTTAATGCTGCCCGGCGTCCGTGCCGATCTGCATAGCGTCCCATTAATAAACTTCCGATAGGGCGCATTAAAAACCCAACTGCGAAAATAGCTGCCGTGTTCAGTAACTGACTCGTTGGATCTCCTTTAGGAAAGAACTCTGCTGAGAAGTAAACAGCGAAAGCAGAGTAAACGTACCAGTCGTACCATTCAATTAAATTGCCGACAGAACCTTTGAAAATATTGCCGGCGACTCGGTTTGATTTTACTTGAGCCAT > 157 RBTH_05376 NA Citrate-proton_symporter EAO55233.1 11 MAQVKSNRVAGNIFKGSVGNLIEWYDWYVYSAFAVYFSAEFFPKGDPTSQLLNTAAIFAVGFLMRPIGSLLMGRYADRHGRRAALTLSITVMAGGSLIIACTPSYESIGIMAPIILVLARLLQGLSLGGEYGTSATYLSEMASSGRRGFYSSFQYVTLVAGQMVALGVQIVLQQLLSEPDMKAWGWRIPFIIGAMGAVAVLWLRRTMDESEQFANIKSQKRESAGTVRALMKHPKAVLTVVGLTLGGTVAFYTYTTYLQKFMVNTVGLPKEVVSWINFVALLIFVVLQPIAGLLSDKIGRRPLLMAFGILGTLLTAPIFFFMEKTTEPIVAFLLMMVGLIIVTGYTSINAIVKAELFPTEIRALGVGLPYALTVAIFSGTAEFIALWLKSIGMESLFYFYVAGCIAISFITYWRMDESSKTSQIEAELGGGDTLVNNKSS Bacillus/Lactobacillus/Streptococcus_group Bacillus_thuringiensis_serovar_israelensis_ATCC_35646 Bacillus_thuringiensis_serovar_israelensis_ATCC_35646 AAJM01000086 6465..7787 Anderson,I.,_Sorokin,A.,_Kapatral,V.,_Reznik,G.,_Bhattacharya,A.,_Mikhailova,N.,_Burd,H.,_Joukov,V.,_Kaznadzey,D.,_Walunas,T.,_DSouza,M.,_Larsen,N.,_Pusch,G.,_Liolios,K.,_Grechkin,Y.,_Lapidus,A.,_Goltsman,E.,_Chu,L.,_Fonstein,M.,_Ehrlich,D.,_Overbeek,R.,_Kyrpides,N._and_Ivanova,N. NA 0:1323 NA NA 14-SEP-2005 Bacillus_thuringiensis_serovar_israelensis_ATCC_35646_sq1838,_whole_genome_shotgun_sequence. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacillus_thuringiensis_Q3EV88_BACTI.gb Bacillus_rRNA_group_1 74492044 Unpublished NA AAJM01000086 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1323 NA genomic_DNA NA ATCC_35646 NA Bacillus_thuringiensis_Berliner_1915 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 339854 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Bacillus,_Bacillus_cereus_group Comparative_genome_analysis_of_Bacillus_cereus_group_genomes_with_Bacillus_subtilis NA AAJM01000086.1 TTAACTAGACTTATTATTAACTAATGTATCCCCACCACCAAGCTCCGCCTCAATCTGCGAAGTCTTCGATGACTCATCCATGCGCCAATACGTAATAAAGCTGATCGCGATACATCCAGCTACGTAGAAGTAGAATAGTGATTCCATTCCGATACTCTTTAGCCATAATGCGATGAACTCAGCTGTTCCGCTGAATATCGCAACGGTTAGTGCATATGGTAAACCTACGCCTAGTGCGCGAATTTCAGTTGGGAAGAGTTCTGCTTTTACAATGGCGTTAATGGAAGTGTAACCAGTAACGATAATGAGACCGACCATCATAAGTAAGAACGCTACGATTGGTTCTGTCGTTTTTTCCATGAAGAAGAAGATTGGTGCTGTTAGTAACGTTCCGAGAATACCGAATGCCATTAATAGTGGGCGACGTCCAATTTTATCGGATAATAGCCCCGCAATTGGTTGAAGTACAACGAAAATAAGTAGTGCGACAAAGTTAATCCAGCTTACAACTTCTTTCGGAAGACCGACTGTGTTTACCATGAACTTTTGTAAATATGTTGTGTACGTATAAAATGCGACAGTACCTCCTAATGTTAGGCCGACTACTGTTAATACTGCTTTCGGGTGTTTCATAAGCGCGCGAACGGTTCCTGCGCTTTCGCGTTTTTGTGATTTTATGTTTGCGAATTGCTCCGACTCATCCATCGTGCGGCGAAGCCATAATACAGCTACTGCGCCCATCGCTCCAATAATGAACGGAATACGCCATCCCCAAGCTTTCATATCTGGTTCGCTTAGTAATTGCTGAAGAACAATTTGAACGCCTAACGCAACCATTTGCCCAGCAACGAGCGTTACATATTGGAAACTTGAATAAAAGCCGCGGCGACCACTACTAGCCATTTCAGATAAATATGTGGCAGAAGTTCCATACTCTCCCCCGAGTGATAACCCTTGTAGTAAACGGGCAAGAACTAAAATAATTGGTGCCATAATACCGATACTTTCGTAACTAGGTGTACAGGCGATAATTAAAGAACCACCGGCCATAACCGTAATCGAAAGTGTTAATGCTGCCCGGCGTCCGTGCCGATCTGCATAGCGTCCCATTAATAAACTTCCGATAGGGCGCATTAAAAACCCAACTGCGAAAATAGCTGCCGTGTTCAGTAACTGACTCGTTGGATCTCCTTTAGGAAAGAACTCTGCTGAGAAGTAAACAGCGAAAGCAGAGTAAACGTACCAGTCGTACCATTCAATTAAATTGCCGACAGAACCTTTGAAAATATTGCCGGCGACTCGGTTTGATTTTACTTGAGCCAT > 158 BACDOR_00759 KEGG:_cal:orf19.644_1.7e-51_HXT4;_high-affinity_glucose_transporter_or_sensor_K01804;_Psort_location:_CytoplasmicMembrane,_score:_10.00 hypothetical_protein EEB27072.1 11 MKNKKNNFYLMGVVFIAILGGLLFGYDTAVISGAEQALQKHLGLDAFWHGVTASSALIGCVIGSAFSGYFASGLGRRNSLRLAALLFFLSALGSYYPEFLFFSKGDTSFALILAFNFYRIIGGIGVGLASAVCPMYIAEIAPSEIRGKLVSCNQFAIIFGMLVVYFVNYMIKDGMPDEVLVSDGWRYMFGSEAVPAALFGILLFLVPETPRYLAMTHQDDKAFSVLEKVNGTDKAKTILSEIKAVTSEKTEKLLTYGLTVIVVGILLSVFQQAIGINAVLYYAPRIFEKIGGGGDGMMQTVVMGVVNILFTLVAIFTVEKMGRKPLLIVGSIGMAVGAFCVAFCDEFQVGGILPVLSIIVYAAFFMMSWGPICWVLIAEIFPNTIRGKAVAIAVAFQWIFNYLVSSTFPAMYEFSPVFAYGLYGVICVLAALFVWKMVPETKGKTLEDMTRLWKKGAKEA Bacteroidia Bacteroides_dorei_DSM_17855 Bacteroides_dorei_DSM_17855 ABWZ01000013 466079..467461 Sudarsanam,P.,_Ley,R.,_Guruge,J.,_Turnbaugh,P.J.,_Mahowald,M.,_Liep,D._and_Gordon,J. NA 0:1383 Bacteroides_dorei_(GenBank_Accession_Number_for_16S_rDNA_gene:AB242142)_is_a_member_of_the_Bacteroidetes_division_of_the_domainbacteria_and_has_been_isolated_from_human_feces._The_sequencedstrain_was_obtained_from_Deutsche_Sammlung_von_Mikroorganismen_undZellkulturen_GmbH_(DSMZ)_(DSM_17855).This_is_a_Newbler_assembly(http://www.454.com/enabling-technology/the-software.asp)consisting_of_one_full_plate_of_a_Roche_454_FLX_fragment_libraryand_one_full_plate_of_a_Roche_454_FLX_paired_end_library_run_with_aQ20_coverage_of_38.4X.This_sequenced_strain_is_part_of_a_comprehensive,_sequence-basedsurvey_of_members_of_the_normal_human_gut_microbiota._A_jointeffort_of_the_WU-GSC_and_the_Center_for_Genome_Sciences_atWashington_University_School_of_Medicine,_the_purpose_of_thissurvey_is_to_provide_the_general_scientific_community_with_a_broadview_of_the_gene_content_of_100_representatives_of_the_majordivisions_represented_in_the_intestines_microbial_community._Thisinformation_should_provide_a_frame_of_reference_for_analyzingmetagenomic_studies_of_the_human_gut_microbiome._Further_details_ofthis_effort_are_described_in_a_white_paper_entitled_Extending_OurView_of_Self:_the_Human_Gut_Microbiome_Initiative_(HGMI)(http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMISeq.pdf)._These_studies_are_supported_by_National_Human_GenomeResearch_Institute.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.For_answers_to_your_questions_regarding_this_assembly_or_project,or_any_other_GSC_genome_project,_please_visit_our_Genome_Groups_webpage_(http://genome.wustl.edu/genome_group_index.cgi)_and_email_thedesignated_contact_person.Annotation_was_added_to_the_contigs_in_November_2008.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC. NA 13-NOV-2008 Bacteroides_dorei_DSM_17855_B_dorei-1.0_Cont3.6,_whole_genome_shotgun_sequence. NA Bacteroidaceae_Pribram_1933 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacteroides_dorei_B6VTX5_9BACE.gb Ristella 208430097 Unpublished NA ABWZ01000013 NA NA Bacteroidales Cytophaga-Flexibacter-Bacteroides_phylum NA 1383 NA genomic_DNA NA DSM_17855 NA Bacteroides_sp._219 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 483217 Bacteria,_Bacteroidetes,_Bacteroidia,_Bacteroidales,_Bacteroidaceae,_Bacteroides Draft_genome_sequence_of_Bacteroides_dorei_(DSM_17855) NA ABWZ01000013.1 ATGAAAAACAAGAAAAACAATTTCTATCTGATGGGAGTGGTGTTTATAGCCATTCTCGGCGGTTTACTTTTCGGTTATGATACAGCTGTTATTTCGGGAGCGGAGCAGGCTCTGCAAAAACATTTGGGATTAGATGCTTTCTGGCATGGCGTGACTGCTTCCAGTGCATTGATAGGTTGTGTCATTGGTAGTGCTTTTTCCGGTTATTTTGCTTCGGGGTTAGGACGTCGTAATTCGTTGCGTCTGGCTGCTTTATTGTTCTTTCTGTCTGCTTTAGGCTCTTATTATCCCGAATTTTTATTTTTCTCTAAAGGAGATACTTCGTTTGCATTGATCCTTGCTTTTAACTTTTATCGTATCATCGGGGGGATCGGTGTAGGACTTGCCTCTGCTGTTTGTCCGATGTACATTGCCGAAATTGCTCCTTCCGAAATTCGTGGTAAATTGGTTTCTTGTAATCAGTTTGCTATTATTTTTGGCATGTTGGTAGTCTATTTTGTGAATTATATGATTAAAGATGGTATGCCGGATGAAGTGCTTGTTTCCGATGGTTGGAGATATATGTTTGGTTCAGAAGCGGTTCCGGCTGCATTATTTGGCATTTTATTGTTTTTGGTTCCTGAAACTCCGCGCTATTTGGCTATGACCCATCAGGATGATAAAGCGTTTTCTGTACTTGAAAAAGTAAATGGAACAGATAAGGCTAAAACTATTTTGTCTGAAATAAAGGCTGTGACTTCCGAGAAAACAGAGAAACTGCTTACATACGGGTTGACAGTTATTGTAGTCGGTATCTTGCTTTCTGTATTTCAGCAAGCTATCGGTATTAATGCTGTGCTTTATTATGCACCGCGTATTTTTGAGAAAATCGGTGGCGGTGGTGATGGTATGATGCAGACTGTGGTAATGGGGGTAGTTAATATTCTCTTTACATTGGTTGCTATCTTTACCGTAGAGAAGATGGGACGTAAACCCTTGTTGATTGTTGGTTCTATTGGTATGGCTGTAGGTGCATTCTGTGTTGCATTTTGTGATGAGTTTCAGGTGGGAGGTATTCTTCCTGTTCTTTCCATCATTGTTTATGCTGCATTTTTTATGATGTCATGGGGACCTATCTGCTGGGTGTTGATTGCAGAGATATTTCCGAATACTATCCGCGGCAAGGCAGTGGCTATCGCTGTAGCTTTCCAGTGGATATTCAATTATCTGGTCTCTTCCACTTTTCCTGCCATGTATGAATTCAGTCCGGTGTTTGCCTATGGGCTTTATGGCGTGATTTGTGTGCTTGCAGCTCTGTTTGTATGGAAGATGGTTCCTGAAACAAAAGGAAAGACTTTGGAAGATATGACTCGTCTTTGGAAAAAAGGAGCGAAGGAGGCTTGA > 159 BACINT_02715 KEGG:_cal:orf19.3526_7.9e-52_ITR2;_myo-inositol_transporter_K08140;_COG:_COG0477_Permeases_of_the_major_facilitator_superfamily;_Psort_location:_CytoplasmicMembrane,_score:_10.00 hypothetical_protein EDV03590.1 11 MKSTINLGYLVFLSVVAALGGFLFGYDTAVISGTIAQVTEQFRLDALQQGWYVGCALVGSIIGVLFAGILSDKFGRKFTMILSAILFSTSAIGCAVSVDFNQLVVYRIIGGVGIGVVSIISPLYISELAVAQYRGRLVSLYQLAVTIGFLGAYLVNYQLLGYSTSNPDIVTGWWSLIFVTEVWRGMLGMEILPALLFFIIIFFIPESPRWLILKGREEKATNILERIYTSSKDALFQLAETKSVLSSESKSEWKLLLQPGIRKAVIIGVCIAMLGQFMGVNAVLYYGPSIFENAGLSGGDSLFYQVLVGLVNTLTTVLALVIIDKIGRKKLVYYGVSGMVISLILIATYFIYGESWGISSIFLLVFFLFYVFCCAVSICAVVFVLLSEMYPTRVRGFAMSIAGFALWIGTYLIGQLTPWMLQNLTPAGTFILFAIMCVPYMLIVWKLVPETTGKSLEEIERHWMKK Bacteroidia Bacteroides_intestinalis_DSM_17393 Bacteroides_intestinalis_DSM_17393 ABJL02000008 765997..767397 Sudarsanam,P.,_Ley,R.,_Guruge,J.,_Turnbaugh,P.J.,_Mahowald,M.,_Liep,D._and_Gordon,J. NA 0:1401 Bacteroides_intestinalis_(GenBank_Accession_Number_for_16S_rDNAgene:_AB214328)_is_a_member_of_the_Bacteroidetes_division_of_thedomain_bacteria_and_has_been_isolated_from_human_feces._Thesequenced_strain_was_obtained_from_Deutsche_Sammlung_vonMikroorganismen_und_Zellkulturen_GmbH_(DSMZ)_(DSM_17393).We_have_collected_7X_coverage_in_plasmid_end_reads_and_454_reads.We_have_performed_one_round_of_automated_sequenceimprovement(pre-finishing),_along_with_manual_improvement_thatincludes_breaking_apart_any_mis-assembly,_and_making_manual_joinswhere_possible._Manual_edits_also_are_made_where_the_consensusappears_to_be_incorrect._All_low_quality_data_on_the_ends_ofcontigs_is_removed._Contigs_are_ordered_and_oriented_wherepossible.Sequencing/Assembly:_The_genomic_DNA_was_purified_from_liquidculture_derived_from_a_single_bacterial_colony._A_hybrid_sequencingstrategy_that_utilized_reads_from_both_454_GS-20_and_ABI_3730xlsequencers_was_devised_and_implemented_to_generate_the_draft_genomesequences._454_reads_were_assembled_using_Newbler_(454_LifeSciences)_into_454_de_novo_contigs._These_de_novo_contigs_wereconverted_in_silico_to_800_base_paired_reads_(superreads)_with400_base_overlaps_with_neighboring_superreads._Finally,_PCAP(Huang,_et_al,_Genome_Research,_13:2164,_(2003))_was_used_toassemble_the_super-reads_and_the_conventional_3730xl_capillaryreads.This_sequenced_strain_is_part_of_a_comprehensive,_sequence-basedsurvey_of_members_of_the_normal_human_gut_microbiota._A_jointeffort_of_the_WU-GSC_and_the_Center_for_Genome_Sciences_atWashington_University_School_of_Medicine,_the_purpose_of_thissurvey_is_to_provide_the_general_scientific_community_with_a_broadview_of_the_gene_content_of_100_representatives_of_the_majordivisions_represented_in_the_intestines_microbial_community._Thisinformation_should_provide_a_frame_of_reference_for_analyzingmetagenomic_studies_of_the_human_gut_microbiome._Further_details_ofthis_effort_are_described_in_a_white_paper_entitled_Extending_OurView_of_Self:_the_Human_Gut_Microbiome_Initiative_(HGMI)(http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMISeq.pdf)._These_studies_are_supported_by_National_Human_GenomeResearch_Institute.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.For_answers_to_your_questions_regarding_this_assembly_or_project,or_any_other_GSC_genome_project,_please_visit_our_Genome_Groups_webpage_(http://genome.wustl.edu/genome_group_index.cgi)_and_email_thedesignated_contact_person.Annotation_was_added_to_the_contigs_in_June_2008.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC. NA 05-JUN-2008 Bacteroides_intestinalis_DSM_17393_B_intestinalis-2.0.1_Cont607,_whole_genome_shotgun_sequence. NA Bacteroidaceae_Pribram_1933 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacteroides_intestinalis_B3CFQ4_9BACE.gb Ristella 172072828 Unpublished NA ABJL02000008 NA NA Bacteroidales Cytophaga-Flexibacter-Bacteroides_phylum NA 1401 NA genomic_DNA NA DSM_17393 NA Bacteroides_intestinalis_Bakir_et_al._2006 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 471870 Bacteria,_Bacteroidetes,_Bacteroidia,_Bacteroidales,_Bacteroidaceae,_Bacteroides Draft_genome_sequence_of_Bacteroides_intestinalis_(DSM_17393) NA ABJL02000008.1 TTATTTTTTCATCCAATGGCGTTCAATCTCTTCCAAAGACTTTCCTGTGGTCTCGGGAACAAGTTTCCAAACAATCAGCATATAGGGTACACACATGATTGCAAACAGAATGAATGTTCCGGCGGGGGTAAGATTCTGGAGCATCCAGGGGGTTAACTGCCCAATCAAGTATGTACCTATCCATAACGCAAAGCCGGCAATGGACATGGCAAATCCACGCACCCGAGTCGGGTACATTTCAGAAAGAAGCACAAATACCACAGCACATATAGACACGGCACAACAAAATACATAGAAAAGGAAAAATACTAAAAGGAAAATGCTGGAGATACCCCAGGACTCACCATAAATAAAGTAAGTTGCAATCAGTATTAAAGAAATTACCATACCTGATACGCCATAATAAACCAACTTTTTACGTCCTATTTTATCAATAATAACAAGAGCCAATACAGTAGTCAATGTATTCACCAATCCCACTAAAACCTGATAGAATAAAGAATCACCTCCGGATAAACCTGCATTTTCAAAAATAGAAGGTCCATAATATAAAACGGCATTCACACCCATAAACTGTCCCAACATAGCAATACATACACCGATAATAACAGCTTTCCTTATACCAGGTTGCAACAAGAGCTTCCATTCAGATTTAGACTCGGATGATAGTACAGATTTAGTCTCTGCCAATTGAAATAAAGCATCCTTAGAAGAGGTATAAATTCTCTCAAGAATATTAGTAGCCTTTTCTTCTCTCCCTTTCAATATCAACCAGCGCGGACTTTCGGGTATGAAGAATATGATGATAAAGAACAATAAAGCGGGCAATATCTCCATACCTAACATTCCTCTCCAGACTTCTGTTACAAATATCAGGCTCCACCACCCTGTAACAATATCAGGATTGCTCGTGGAATATCCCAAAAGCTGATAATTCACAAGATAAGCACCTAAAAATCCAATCGTAACCGCTAACTGGTACAAGGAAACCAAGCGTCCACGATACTGAGCCACAGCAAGCTCCGAAATATAGAGCGGAGAGATGATAGAAACAACACCTATCCCGACACCACCTATAATCCGATAGACAACCAATTGATTAAAATCCACAGATACAGCACAGCCAATGGCGGATGTGGAAAACAAAATAGCTGAAAGGATCATAGTAAATTTTCGTCCGAACTTATCGCTCAAAATGCCTGCAAAAAGTACTCCGATAATAGAACCAACCAGTGCACAGCCTACATACCATCCTTGTTGTAAGGCATCCAGTCGAAACTGTTCTGTTACTTGAGCAATAGTACCGGAGATAACAGCAGTGTCATATCCAAATAAGAAACCGCCCAAGGCCGCTACTACTGAAAGAAAAACTAAATAGCCTAAATTAATTGTCGACTTCAT > 160 CW1_2800 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 MFS_transporter,_sugar_porter_(SP)_family_protein EFF55786.1 11 MINTTNEGSKLYLYSITSVAILGGLLFGYDTAVISGAEKGLEAFFLSASDFQYNKVMHGITSSSALIGCVLGGAISGIFASRLGRRNSLRLAAVLFFLSALGSYYPEVLFFEYGKPNMDLLIAFNLYRVLGGIGVGLASAVCPMYIAEIAPSNIRGTLVSCNQFAIIFGMLVVYFVNFLIMGDHQNPIILKDAAGVLSVSAESDMWTVYEGWRYMFGSEAFPAAFFGLLLFFVPKTPRYLVLIQQDEKAYSILEKINGKTKAQEILNDIKATAHEKTEKIFTYGVAVIVIGILLSVFQQAIGINAVLYYAPRIFENAGAEGGGMMQTVIMGIVNIVFTLVAIFTVDRFGRKPLLIIGSIGMAVGAFAVAMCDSMAIKGVLPVLSVIVYAAFFMMSWGPICWVLISEIFPNTIRGKAVAIAVAFQWIFNYIVSSTFPALYDFSPMFAYSLYGIICVAAAIFVWRWVPETKGKTLEDMSKLWKKNK Bacteroidia Bacteroides_ovatus_SD_CC_2a Bacteroides_ovatus_SD_CC_2a ADMP01000246 13294..14748 Nelson,K.E.,_Sutton,G.,_Torralba,M.,_Durkin,S.,_Harkins,D.M.,_Montgomery,R.,_Ziemer,C.,_Klaassens,E.,_Ocuiv,P.,_Morrison,M._and_Nelson,K.E. NA 0:1455 Bacteroides_ovatus_is_part_of_the_normal_human_gut_flora,_howeverit_is_the_least_common_of_the_Bacteroides_intestinal_isolates._Inone_comprehensive_16S_rDNA_sequence-based_enumeration_of_thecolonic_microbiota_of_three_healthy_adult_humans_it_represents,_onaverage,_0.034%_of_all_16S_rDNA_sequences_and_0.041%_of_thesequences_in_its_division_(Eckburg_et._al._(2005))._This_organismis_occasionally_isolated_from_clinical_specimens_and_can_also_beisolated_from_poultry.This_genome_is_part_of_a_collection_of_seven_draft_genomessubmitted_for_inclusion_within_the_International_Human_MicrobiomeConsortium_(IHMC)_Data_and_Analysis_Coordination_Center_(DACC)._Allof_the_bacteria_were_cultured_from_human_stool_samples._Fundssupporting_the_genome_sequencing_at_JCVI_were_provided_via_aUSDA-IFAFS_award_to_the_North_American_Consortium_for_Genomics_ofFibrolytic_Bacteria,_and_CSIRO_(Australia).The_four_strains_below_were_all_isolated_in_Mark_Morrisons_lab(The_Ohio_State_University,_Queensland_Biosciences_Precinct,_306Carmody_Road,_St._Lucia_QLD_4067,_Australia)_as_part_of_theAustralian_Human_Gut_Microbiome_Project,_the_current_contributionof_the_Commonwealth_Scientific_and_Industrial_Research_Organization(CSIRO)_to_the_IHMC.Enterococcus_faecalis_PC1.1_(pid:791166)Enterococcus_faecium_PC4.1_(pid:791161)Bacteroides_vulgatus_PC510_(pid:42763)Turicibacter_sp._PC909_(pid:42765)The_three_strains_below_were_isolated_in_North_America_by_CherieZiemer_(National_Laboratory_for_Agriculture_and_the_Environment,ARS-USDA,_2202_NSRIC,_2110_University_Blvd,_Ames,_IA_50011-3120)_aspart_of_a_DARPA-funded_project.Bacteroides_ovatus_SD_CMC_3f_(pid:42769)Bacteroides_xylanisolvens_SD_CC_1b_(pid:42773)Bacteroides_ovatus_SD_CC_2a_(pid:42771).##Genome-Assembly-Data-START##Assembly_Method_::_Newbler_Assembler_v._1.1.03.24-64-7Genome_Coverage_::_14.1xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 30-MAR-2010 Bacteroides_ovatus_SD_CC_2a_contig00054,_whole_genome_shotgun_sequence. NA Bacteroidaceae_Pribram_1933 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacteroides_ovatus_D4X0U4_BACOV.gb Ristella 292637349 Submitted_(29-MAR-2010)_The_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA ADMP01000246 NA NA Bacteroidales Cytophaga-Flexibacter-Bacteroides_phylum NA 1455 NA genomic_DNA NA SD_CC_2a NA Pseudobacterium_ovatum NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 702444 Bacteria,_Bacteroidetes,_Bacteroidia,_Bacteroidales,_Bacteroidaceae,_Bacteroides Direct_Submission NA ADMP01000246.1 ATGATTAATACAACGAACGAGGGTAGTAAACTCTACCTATATTCGATAACCTCTGTCGCCATTTTGGGAGGACTGCTTTTCGGATACGATACAGCGGTTATTTCCGGTGCAGAGAAAGGCTTGGAGGCTTTTTTCCTTTCGGCCTCTGATTTTCAATACAATAAAGTAATGCATGGAATCACATCTTCCAGTGCATTAATTGGCTGTGTACTGGGTGGTGCGATCTCCGGTATATTTGCTTCCCGTTTGGGACGTCGTAATTCTCTAAGGCTTGCTGCCGTACTCTTTTTCCTTTCAGCATTAGGTTCCTATTATCCGGAAGTCTTGTTTTTCGAATATGGAAAGCCGAACATGGATTTGCTGATTGCTTTTAATTTGTATCGTGTTTTGGGCGGTATCGGTGTTGGACTGGCTTCTGCAGTCTGTCCGATGTATATTGCTGAAATTGCTCCTTCTAATATTCGTGGAACGCTTGTATCGTGTAACCAGTTTGCTATCATCTTCGGTATGTTGGTAGTATACTTCGTGAATTTCCTGATTATGGGCGACCATCAAAATCCTATTATTTTGAAAGATGCAGCCGGTGTACTGTCTGTTAGTGCTGAATCTGATATGTGGACTGTTTATGAAGGATGGCGTTACATGTTCGGTTCGGAAGCTTTCCCTGCCGCTTTCTTCGGTCTGTTGTTGTTCTTTGTTCCCAAGACTCCTCGTTATCTTGTATTGATACAGCAGGATGAAAAGGCTTATTCGATTCTTGAAAAGATCAATGGTAAGACAAAAGCACAGGAAATTCTTAATGATATTAAAGCTACTGCTCATGAAAAGACAGAGAAAATCTTTACTTATGGAGTGGCAGTAATTGTGATCGGTATTTTGCTTTCTGTATTCCAACAGGCTATCGGTATTAATGCGGTACTTTATTATGCTCCTCGTATTTTCGAAAATGCAGGTGCAGAAGGAGGTGGCATGATGCAGACAGTTATTATGGGTATTGTAAACATTGTCTTTACATTGGTTGCAATCTTCACTGTAGACCGCTTCGGACGTAAACCACTATTGATAATCGGTTCTATTGGTATGGCTGTAGGTGCATTTGCGGTAGCAATGTGTGATAGCATGGCAATAAAGGGTGTTCTCCCGGTACTTTCAGTGATTGTGTATGCAGCATTCTTTATGATGTCTTGGGGACCGATTTGCTGGGTGTTGATCTCGGAAATATTCCCGAACACCATCCGTGGTAAAGCGGTGGCAATCGCCGTAGCATTCCAATGGATATTCAATTACATTGTATCTTCTACTTTCCCGGCACTGTACGACTTCAGCCCGATGTTTGCATATAGTTTATATGGCATAATCTGTGTGGCTGCTGCTATCTTCGTTTGGCGTTGGGTGCCTGAAACGAAAGGTAAGACACTGGAAGATATGAGCAAGCTTTGGAAGAAAAATAAATAA > 161 BSIG_00259 NA arabinose-proton_symporter EES69986.1 11 MSDMKSTINFGYLIFLSVVAALGGFLFGYDTAVISGTIAQVTQLFQLDTLQQGWYVGCALIGSIVGVLFAGILSDKLGRKMTMIISATLFSTSALGCAISADFTQLVVYRIIGGVGIGVVSIVSPLYISEVAVAQYRGRLVSLYQLAVTVGFLGAYLINYQLLAYAESGNQLSMDWLNKIFVTEVWRGMLGMETLPAVLFFIIIFFIPESPRWLIVRGKEEKAVNILERIYNSVSEAASQLKETKSVLTSETKSEWAMLMKPGIFKAVIIGVCIAILGQFMGVNAVLYYGPSIFENAGLSGGDSL Bacteroidia Bacteroides_sp._1_1_6 Bacteroides_sp._1_1_6 GG695899 333268..334182 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Allen-Vercoe,E.,_Strauss,J.,_Ambrose,C.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:>915 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_12.12xSequencing_Technology:_454. NA 08-JUL-2009 Bacteroides_sp._1_1_6_genomic_scaffold_supercont1.1,_whole_genome_shotgun_sequence. NA Bacteroidaceae_Pribram_1933 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacteroides_sp_C6IET8_9BACE.gb Ristella 251841647 Unpublished NA GG695899 NA NA Bacteroidales Cytophaga-Flexibacter-Bacteroides_phylum NA 915 NA genomic_DNA NA 1_1_6 NA Bacteroides_sp._1_1_6 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 469586 Bacteria,_Bacteroidetes,_Bacteroidia,_Bacteroidales,_Bacteroidaceae,_Bacteroides The_Genome_Sequence_of_Bacteroides_sp._strain_1_1_6 NA GG695899.1 ATGAGTGATATGAAGTCTACAATTAACTTTGGCTATCTTATTTTCCTTTCTGTTGTAGCAGCTTTGGGAGGATTTTTGTTCGGATATGATACTGCTGTTATATCCGGAACAATCGCTCAGGTTACTCAACTTTTTCAACTGGATACGTTGCAACAGGGGTGGTATGTGGGATGTGCTTTAATAGGTTCTATCGTCGGTGTTCTTTTTGCCGGTATCCTGAGTGATAAGCTGGGACGAAAAATGACGATGATTATTTCAGCGACTCTGTTTTCTACATCGGCTTTAGGTTGTGCGATCTCCGCAGACTTCACCCAATTGGTAGTCTATCGTATTATTGGTGGAGTTGGTATTGGTGTTGTGTCGATTGTTTCTCCTTTGTATATATCTGAAGTGGCTGTGGCACAATATAGAGGGCGTTTGGTATCTTTATATCAATTGGCTGTGACAGTTGGATTTTTAGGAGCTTATTTGATTAACTATCAATTGCTGGCTTATGCTGAAAGTGGTAATCAGTTAAGTATGGACTGGTTGAATAAGATATTTGTTACTGAAGTCTGGCGAGGAATGTTGGGAATGGAAACATTGCCGGCTGTGTTATTCTTCATCATTATCTTCTTTATTCCGGAGAGTCCTCGTTGGCTGATCGTAAGAGGTAAAGAAGAAAAAGCTGTCAATATATTAGAAAGGATATATAATTCAGTTTCAGAGGCTGCAAGTCAATTAAAAGAAACGAAATCTGTATTGACGTCTGAAACAAAATCTGAATGGGCTATGTTAATGAAACCCGGAATTTTTAAAGCGGTCATCATTGGTGTATGCATTGCTATTTTGGGACAGTTCATGGGTGTAAATGCTGTACTTTATTATGGCCCTTCCATTTTCGAAAACGCAGGACTTTCAGGAGGAGATTCTTTG > 162 HMPREF9007_01377 NA arabinose-proton_symporter_(Arabinose_transporter) EFI05889.1 11 MYTIVNLSQVLVGLVNTLTTVLALVIIDRVGRKQLVYYGVSGMVVSLLLIGIYFLFGDSWGVSSLFLLVFFLFYVFCCAVSICAVVFVLLSEMYPTKVRGLAMSIAGFALWIGTYLIGQLTPWMLQNLTPAGTFFLFAVMCVPYMLIVWKLVPE Bacteroidia Bacteroides_sp._1_1_14 Bacteroides_sp._1_1_14 GG774703 823078..823539 Ward,D.,_Earl,A.,_Feldgarden,M.,_Gevers,D.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Bochicchio,J.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Strauss,J.,_Daigneault,M.,_McDonald,J.,_Ambrose,C.E.,_Allen-Vercoe,E.,_Haas,B.,_Nusbaum,C._and_Birren,B. NA <0:462 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Source_DNA_provided_by_Daigneault,_M.,_Ambrose,_C.E._andAllen-Vercoe,_E._(Molecular_and_Cellular_Biology,_University_ofGuelph,_Guelph,_Ontario,_N1G_2W1,_Canada).Bacteria_provided_by_Strauss,_J.C.,_Ambrose,_C.E._and_Allen-Vercoe,E._(Molecular_and_Cellular_Biology,_University_of_Guelph,_Guelph,Ontario,_N1G_2W1,_Canada).Gene_Calling_Method:_GeneMark;_Glimmer;_Metagene;_PFAM;_Blast_tonon-redundant_protein_database;_Manual_curation.##Genome-Assembly-Data-START##Assembly_Method_::_Newbler_v._2.1-PreRelease-4/28/2009Genome_Coverage_::_12xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 14-JUN-2010 Bacteroides_sp._1_1_14_genomic_scaffold_supercont1.2,_whole_genome_shotgun_sequence. NA Bacteroidaceae_Pribram_1933 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacteroides_sp_D7I9G4_9BACE.gb Ristella 298262462 Unpublished NA GG774703 NA NA Bacteroidales Cytophaga-Flexibacter-Bacteroides_phylum NA 462 NA genomic_DNA NA 1_1_14 NA Bacteroides_sp._1_1_14 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 469585 Bacteria,_Bacteroidetes,_Bacteroidia,_Bacteroidales,_Bacteroidaceae,_Bacteroides The_Genome_Sequence_of_Bacteroides_sp._strain_1_1_14 NA GG774703.1 CTCCGGCACGAGTTTCCATACGATGAGCATATACGGCACGCACATGACTGCGAACAGGAAGAATGTTCCGGCGGGGGTGAGATTCTGGAGCATCCAGGGGGTTAACTGTCCGATCAGGTACGTTCCTATCCACAGGGCGAATCCTGCAATGGACATCGCCAGTCCGCGCACCTTGGTGGGGTACATCTCCGAGAGGAGCACGAACACCACGGCACAGATGGAGACGGCACAGCAGAATACATAGAACAGGAAGAAAACGAGCAGGAAGAGGCTGGATACTCCCCAGGAATCACCGAAGAGGAAGTAAATGCCGATCAGCAGGAGGGAGACAACCATCCCCGAAACTCCGTAATAGACCAGTTGCTTGCGGCCGACCCTGTCGATGATCACAAGAGCAAGAACGGTGGTCAGAGTGTTGACTAGTCCTACGAGAACTTGGCTTAAATTAACTATAGTATACAG > 163 HMPREF0104_00383 NA D-xylose-proton_symporter EFI10255.1 11 MIYVIAIVAAMGGLLFGFDTGVISGAIPFFQKDFGIDDSMVEVVTSSGLLGAILGALCCGKLTDRIGRRKVILTSAVIFAIGALWSGWAPGIYHLIAARLFLGVAIGISSFAVPLYIAEVSPAKSRGMFVAMFQLMITIGLLVSYLSDLYFADETSVSCWRPMFYVGVIPAIILFVGMLLVPPSPRWLMSVGREEESLSVLKMIEHPDQVNVSFEQMRNEMRKNDEQQGRFKDLAQPWLRNALVIAIGIMFFQQFVGINTVIYYSPKIFLMAGFDGAVSAIGASVGVGVVNLLFTLLSVYFVDRLGRRKLYFLGLSGIVISLSLLATSFIFAAQLGDSGKWLSIVLIFLYVGFFAISIGPLGWLIVSEVFPQKLRGLGASLGSLSVWFFNAIVSFTFFKILKVFSIPGTDLTINGESQGNPAGAFLFYAFIGIVAIIWGYFYVPETKGVSLENIEAFWGKGGHPKDKII Bacteroidia Bacteroides_sp._3_1_19 Bacteroides_sp._3_1_19 GG774759 521502..522911 Ward,D.,_Earl,A.,_Feldgarden,M.,_Gevers,D.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Bochicchio,J.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Strauss,J.,_Daigneault,M.,_McDonald,J.,_Ambrose,C.E.,_Allen-Vercoe,E.,_Haas,B.,_Nusbaum,C._and_Birren,B. NA 0:1410 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Source_DNA_provided_by_McDonald,_J.,_Ambrose,_C.E.,_Strauss,_J.C.and_Allen-Vercoe,_E._(Molecular_and_Cellular_Biology,_University_ofGuelph,_Guelph,_Ontario,_N1G_2W1,_Canada).Bacteria_provided_by_Strauss,_J.C.,_Ambrose,_C.E._and_Allen-Vercoe,E._(Molecular_and_Cellular_Biology,_University_of_Guelph,_Guelph,Ontario,_N1G_2W1,_Canada).Gene_Calling_Method:_GeneMark;_Glimmer;_Metagene;_PFAM;_Blast_tonon-redundant_protein_database;_Manual_curation.##Genome-Assembly-Data-START##Assembly_Method_::_Newbler_v._2.1-PreRelease-4/28/2009Genome_Coverage_::_40xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 14-JUN-2010 Bacteroides_sp._3_1_19_genomic_scaffold_supercont1.1,_whole_genome_shotgun_sequence. NA Bacteroidaceae_Pribram_1933 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bacteroides_sp_D7ILM8_9BACE.gb Ristella 298268221 Unpublished NA GG774759 NA NA Bacteroidales Cytophaga-Flexibacter-Bacteroides_phylum NA 1410 NA genomic_DNA NA 3_1_19 NA Bacteroides_sp._3_1_19 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 469592 Bacteria,_Bacteroidetes,_Bacteroidia,_Bacteroidales,_Bacteroidaceae,_Bacteroides The_Genome_Sequence_of_Bacteroides_sp._strain_3_1_19 NA GG774759.1 ATGATTTATGTGATAGCGATTGTCGCCGCCATGGGAGGACTATTGTTTGGTTTTGATACCGGCGTGATTTCCGGGGCGATTCCTTTCTTCCAGAAAGATTTTGGCATAGACGATAGTATGGTGGAGGTCGTTACTTCCTCCGGTTTGCTGGGAGCTATTCTGGGAGCGCTGTGTTGTGGTAAGTTGACGGATCGCATAGGGCGTAGGAAAGTCATTTTGACTTCGGCTGTTATTTTCGCTATCGGTGCGTTATGGTCGGGATGGGCTCCGGGCATTTATCATTTGATCGCCGCCCGTTTATTCCTGGGGGTGGCTATCGGGATATCTTCTTTTGCGGTGCCTCTTTATATCGCAGAAGTTTCTCCGGCGAAATCACGGGGGATGTTTGTCGCCATGTTCCAATTGATGATTACGATCGGGCTTCTGGTATCTTATCTTTCGGATTTGTATTTTGCGGATGAGACGTCTGTTTCATGTTGGAGGCCGATGTTTTATGTGGGGGTGATTCCCGCTATTATTTTGTTCGTGGGTATGTTGCTGGTTCCACCATCTCCAAGGTGGTTGATGTCCGTTGGCAGGGAGGAGGAGAGTTTATCGGTCTTAAAGATGATCGAGCACCCGGATCAAGTAAATGTCTCATTTGAGCAGATGCGGAATGAGATGCGGAAAAATGATGAGCAACAAGGGCGTTTTAAGGATTTGGCTCAGCCTTGGTTGAGGAATGCGTTGGTTATCGCTATTGGTATCATGTTCTTCCAACAGTTCGTAGGTATCAATACGGTGATCTATTATAGTCCTAAAATATTCTTGATGGCCGGTTTCGATGGTGCGGTCTCTGCGATTGGGGCTTCTGTAGGGGTGGGAGTTGTCAATTTATTGTTCACGTTACTGTCTGTCTATTTCGTAGATCGGCTGGGAAGGCGTAAACTTTATTTTCTGGGGTTGAGCGGTATCGTGATTTCCTTGTCGCTACTCGCTACCTCTTTTATATTCGCCGCTCAATTAGGGGATTCCGGGAAATGGCTTTCCATTGTCCTTATTTTCTTATATGTGGGATTTTTCGCTATCAGCATCGGGCCTCTAGGTTGGTTGATTGTGTCGGAAGTGTTTCCACAAAAGTTAAGAGGGCTGGGGGCTTCTCTCGGTTCATTGTCCGTTTGGTTTTTCAATGCGATCGTATCGTTTACCTTTTTCAAGATACTGAAGGTATTCTCAATACCGGGAACCGATTTAACGATCAATGGCGAAAGCCAAGGGAATCCGGCAGGAGCGTTCTTATTTTATGCGTTTATTGGAATTGTGGCGATTATTTGGGGATATTTCTATGTACCGGAAACGAAAGGAGTTTCATTGGAGAATATCGAGGCTTTTTGGGGAAAAGGAGGACACCCGAAAGATAAAATAATATAA > 164 BARCL_0975 NA alpha-ketoglutarate_permease YP_004159227.1 11 MENEETLALYDAKKRILSIISSASGNLVEWYDFYVYSFTSIYFASQFFPSDGNIILQLFKAAIVFSIGFLMRPIGGWLFGFIADRYGRKRSMLISVFMMCGGSFLIAVLPTYETIGTSAAVLLLLLRMLQGLSVGGEYGTTATYMSEIALKNRRGFFSSFQYTTLIGGQLLASLVIFILAFYLTENQLKAWGWRIPFAIGGLGAIVAIYLRRSLHETTTKESRSKEQAGSIRELWRNHRKAFSLVVGFTAGGSLTFYTYTTYMQKYLITTTGFDKHTATTIMTAALFVFMLLQPAFGALADKIGTKTSLLIWSSLSVIFTIPGLQIIGNTDNLWVALSTLIVMLCIISFYTSISGIVKAEMFPSSIRAMGVGLSYAIANALFGGSAESVALLLKDIGYEFVFYLYITGMMIIAFIAVLLMPDARKSGYLQGEGIH alpha_subgroup Bartonella_clarridgeiae_73 Bartonella_clarridgeiae_73 NC_014932 1071405..1072712 Engel,P.,_Salzburger,W.,_Liesch,M.,_Chang,C.C.,_Maruyama,S.,_Lanz,C.,_Calteau,A.,_Lajus,A.,_Medigue,C.,_Schuster,S.C._and_Dehio,C. NA 0:1308 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FN645454.Annotation_results_relative_to_BLAST_similarities,_COGassignations,_enzymatic_function_prediction_(PRIAM_software),_TMHMMand_SignalP_predictions,_and_synteny_conservation_(Syntonizersoftware)_are_available_in_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage.COMPLETENESS:_full_length. NA 26-JAN-2012 Bartonella_clarridgeiae_73,_complete_genome. NA Bartonellaceae_Gieszczykiewicz_1939_(Approved_Lists_1980)_emend._Brenner_et_al._1993 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bartonella_clarridgeiae_E6YIG8_BARC7.gb Rochalimaea_(Macchiavello_1947)_Krieg_1961 319898193 PLoS_Genet._7_(2),_E1001296_(2011) NA NC_014932 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives 21347280 1308 NA genomic_DNA NA 73 NA Bartonella_clarridgeiae_Lawson_and_Collins_1996 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 696125 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Bartonellaceae,_Bartonella Parallel_evolution_of_a_type_IV_secretion_system_in_radiating_lineages_of_the_host-restricted_bacterial_pathogen_Bartonella NA NC_014932.1 ATGGAGAATGAAGAAACTTTAGCACTATATGACGCGAAAAAACGTATTTTGTCTATCATATCTAGCGCATCGGGTAATTTAGTAGAGTGGTATGACTTTTATGTTTATTCATTTACTTCAATTTATTTTGCATCGCAATTTTTTCCTTCAGATGGCAACATTATACTCCAACTTTTTAAAGCTGCTATAGTTTTTTCTATTGGCTTTCTTATGCGTCCAATCGGTGGATGGCTCTTTGGATTCATTGCTGATCGTTATGGACGCAAACGCTCAATGCTTATTTCTGTTTTTATGATGTGTGGTGGTTCGTTCTTAATTGCCGTACTTCCTACCTATGAAACTATTGGAACCTCCGCAGCAGTCCTTTTACTTTTACTCCGAATGCTTCAAGGACTTTCTGTTGGTGGTGAGTATGGAACAACAGCAACTTATATGAGCGAAATTGCCCTTAAAAATCGCCGAGGTTTTTTTAGTTCCTTCCAATATACTACGCTGATTGGGGGTCAACTTCTTGCCAGTCTTGTTATATTTATTTTAGCGTTTTATCTCACAGAGAATCAACTAAAAGCATGGGGTTGGCGTATCCCATTTGCTATTGGTGGATTAGGAGCTATTGTGGCGATTTATCTCCGTCGTTCACTTCATGAAACAACAACAAAAGAAAGTCGTTCTAAAGAACAAGCTGGTAGTATTAGAGAACTTTGGCGCAACCATCGAAAAGCCTTTTCTTTAGTGGTTGGTTTTACAGCTGGAGGATCACTAACATTTTATACCTATACAACTTATATGCAAAAATATCTCATTACCACTACTGGATTTGATAAGCATACAGCTACAACTATAATGACTGCTGCACTGTTTGTTTTTATGTTACTTCAACCAGCATTTGGCGCTTTAGCTGATAAAATTGGAACAAAAACCTCACTTCTCATTTGGAGTTCCCTATCTGTGATTTTCACGATTCCTGGACTTCAAATCATTGGTAATACTGATAATTTATGGGTTGCCTTATCAACCCTTATTGTAATGTTATGCATTATCAGTTTTTATACATCCATCTCTGGTATCGTAAAAGCAGAAATGTTCCCATCATCAATACGAGCAATGGGTGTTGGTTTATCTTACGCCATTGCTAATGCATTATTTGGTGGATCAGCTGAATCCGTAGCACTTTTATTAAAAGATATTGGATATGAATTTGTCTTTTATCTTTATATAACTGGCATGATGATTATTGCATTCATTGCAGTTCTTTTGATGCCTGATGCTCGAAAAAGCGGATATCTTCAAGGTGAAGGCATTCACTAA > 165 BIFLAC_05475 COG0477_Permeases_of_the_major_facilitator_superfamily probable_sugar_transporter EDT89032.1 11 MTTAELGLGAATPIDGPSPEREPLANAEATTLTRNERLDRLPFNKAHRKLLMASGIGWAFDAMDVGLVSFVVTAIAADPHFNLDATQKSWVLSIGFIGMAIGAALGGFLADKLGRKTVFTATMIVFGLANGAMAFSWTLLALLAARFVIGLGLGAELPVASTLVSEFSPAKQRGRITVLLESFWAVGWILAAMIGYFVIPNTGDWGWRWALLIGAIPLLYAIVARRHLPESVRFLEARGDNERAEASVRYFEQASGVAAVPSKPARKLGRIRMRELVGRKYLGITLAIWATWFFVNFSYYGAFTWMPSLLADQFGSLTKSFGYTLAISIAQLPGYFLAAFLVERWGRRKTLSVFLAVSALAAFLFSQSATVAQVLCFGMLLSASNLGAWGVMYAVTPEIYPTRMRSTAAGAAAAVGRIAAIVAPLLVPWFLTMSGGNKSVAFIVFAVAFVLACVAALFLPERTGESLED high_GC_Gram+ Bifidobacterium_animalis_subsp._lactis_HN019 Bifidobacterium_animalis_subsp._lactis_HN019 ABOT01000005 133356..134765 Collett,M.A.,_Depree,K.M.,_Rand,C.J.,_Mason,C._and_Stanton,J.-A.L. NA 0:1410 Genome_was_manually_curated_based_on_annotation_generated_by_theNCBI_Prokaryotic_Genomes_Automatic_Annotation_Pipeline_Group.Information_about_the_Pipeline_can_be_found_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.Source_DNA_is_available_from_Mike_Collett,_Fonterra_ResearchCentre,_Private_Bag_11029,_Palmerston_North_4442,_New_Zealand,michael.collett@fonterra.com_The_strain_is_available_from_eitherMike_Collett,_Fonterra_Research_Centre,_Private_Bag_11029,Palmerston_North_4442,_New_Zealand,_michael.collett@fonterra.com_orfrom_Australian_Government_Analytical_Laboratories_(AGAL)_strainnumber,_NM_97/09513.This_version_of_the_assembly,_Blac_1.0,_represents_31-fold_coverageof_the_genome. NA 15-APR-2008 Bifidobacterium_animalis_subsp._lactis_HN019_contig09,_whole_genome_shotgun_sequence. NA Bifidobacteriaceae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bifidobacterium_animalis_B2EBC3_BIFAN.gb Tissieria 183218265 Submitted_(02-APR-2008)_Fonterra_Research_Centre,_Private_Bag_11029,_Palmerston_North_4442,_New_Zealand NA ABOT01000005 NA NA Bifidobacteriales_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1410 NA genomic_DNA NA HN019 NA Bifidobacterium_longum_subsp._animalis_biotype_a NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA Bifidobacterium_lactis_Meile_et_al._1997 NA NA NA prokaryotes NA 486409 Bacteria,_Actinobacteria,_Actinobacteridae,_Bifidobacteriales,_Bifidobacteriaceae,_Bifidobacterium Direct_Submission NA ABOT01000005.1 ATGACCACCGCGGAACTGGGCCTCGGCGCCGCAACGCCGATCGACGGCCCCTCACCGGAGCGCGAGCCGCTCGCCAATGCCGAAGCGACCACGCTCACACGCAACGAACGACTCGACCGCCTGCCGTTCAACAAGGCGCATCGCAAACTGCTCATGGCGTCGGGCATCGGTTGGGCCTTCGACGCCATGGATGTGGGATTGGTGTCGTTCGTCGTCACCGCCATCGCCGCCGACCCGCATTTCAACCTTGACGCCACGCAGAAGTCATGGGTGCTGTCGATCGGCTTCATTGGCATGGCCATCGGCGCCGCGCTGGGCGGTTTCCTCGCCGACAAGCTCGGCCGCAAGACGGTGTTCACCGCCACAATGATCGTGTTCGGACTCGCCAACGGTGCCATGGCATTCTCGTGGACGCTGCTCGCGCTCTTGGCGGCACGCTTCGTGATCGGCCTCGGTCTGGGCGCCGAACTGCCGGTCGCCTCCACGCTCGTCTCCGAATTCTCGCCGGCCAAGCAGCGCGGCCGCATCACGGTGCTGCTCGAATCGTTCTGGGCGGTAGGCTGGATTCTCGCCGCGATGATCGGCTATTTCGTGATTCCAAACACCGGCGACTGGGGTTGGCGTTGGGCGCTGCTCATCGGCGCCATCCCGCTGCTCTATGCGATTGTCGCGCGCCGCCACCTGCCCGAGTCCGTGCGCTTCCTCGAGGCCCGTGGCGACAACGAACGCGCAGAGGCCTCCGTCCGCTACTTCGAACAAGCCTCGGGTGTCGCCGCCGTGCCATCGAAACCCGCCAGGAAACTGGGTAGGATTCGCATGCGCGAACTCGTCGGCCGTAAATACCTCGGCATCACGCTGGCGATCTGGGCCACCTGGTTCTTCGTCAACTTCTCGTACTACGGTGCGTTCACCTGGATGCCGTCGCTGCTTGCAGACCAGTTCGGCTCGCTCACGAAGTCGTTCGGCTACACGCTCGCCATCTCGATCGCGCAGCTGCCCGGCTACTTCCTTGCCGCATTCCTCGTGGAACGTTGGGGCCGGCGCAAGACGCTGAGCGTGTTCCTCGCCGTCTCCGCGCTCGCCGCGTTCCTGTTCTCGCAATCCGCAACGGTGGCGCAGGTGCTGTGCTTCGGCATGCTGCTCTCCGCCTCCAACCTGGGTGCGTGGGGTGTGATGTACGCGGTGACGCCGGAGATCTACCCGACCCGCATGCGTTCCACCGCAGCCGGTGCAGCCGCCGCCGTGGGCCGTATCGCCGCCATCGTGGCGCCGCTTCTCGTGCCGTGGTTCCTCACGATGTCCGGCGGCAACAAGTCCGTCGCCTTCATCGTCTTCGCTGTCGCCTTCGTGCTCGCCTGCGTCGCCGCGCTGTTCCTGCCCGAGCGTACCGGTGAATCCCTGGAGGATTAA > 166 Blon_0130 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_blo:BL0532_transmembrane_transport_protein_possibly_for_shikimate major_facilitator_superfamily_protein YP_002321637.1 11 MTAAVEETGLGQAAGKAATLVRDSVKTVIAASMVGTAIEFYDFYAYGTAAANYFPHIFFSAKDNPTVALLMSLLTFAIAFIARPLGSLIFGHFGDRMGRKTTLVVSLMTMGVGTFLIGCLPTYDQVGVGAVAILCLLRFIQGIGLGGEWSGAALVATENAPEDKRALYGSFPELGAPIGFFLSNGTYFVLESFNNQDAMLAWGWRVPFLLSAILVIVGLVVRVHMEETPIFRMAQEQKKVVKSPLTEVFRKSWRQVLQATFLVAVTYTLFYTLATWSLAWGTKEQGEGGGGLGFTNQEYLLMLMISICVFALFIVLSCLYADKIGRKRVLTFSSCALVVFAVLFPFLLDGGLVGQKNFLANMVFLCVGFALMGVAFGPIGAFLPELFEANVRYSGSGIGYNLAAIVGAAFVPTIATWLSSHWGVHSVGLYLAVMAVCCLVSVLTCRETKDADFTK high_GC_Gram+ Bifidobacterium_longum_subsp._infantis_ATCC_15697 Bifidobacterium_longum_subsp._infantis_ATCC_15697 NC_011593 153976..155343 Sela,D.A.,_Chapman,J.,_Adeuya,A.,_Kim,J.H.,_Chen,F.,_Whitehead,T.R.,_Lapidus,A.,_Rokhsar,D.S.,_Lebrilla,C.B.,_German,J.B.,_Price,N.P.,_Richardson,P.M._and_Mills,D.A. NA 0:1368 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001095.URL_--_http://www.jgi.doe.govJGI_Project_ID:_40002686Source_DNA_available_from_David_Mills_(damills@ucdavis.edu)Bacteria_available_from_ATCC:_ATCC_15697Contacts:_David_Mills_(damills@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-PGFFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Bifidobacterium_longum_subsp._infantis_ATCC_15697_chromosome,_complete_genome. NA Bifidobacteriaceae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bifidobacterium_longum_B7GT36_BIFLS.gb Tissieria 213690928 Proc._Natl._Acad._Sci._U.S.A._105_(48),_18964-18969_(2008) NA NC_011593 NA NA Bifidobacteriales_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 19033196 1368 NA genomic_DNA NA ATCC_15697 NA Bifidobacterium_longum_Reuter_1963 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA NA NA NA NA prokaryotes NA 391904 Bacteria,_Actinobacteria,_Actinobacteridae,_Bifidobacteriales,_Bifidobacteriaceae,_Bifidobacterium The_genome_sequence_of_Bifidobacterium_longum_subsp._infantis_reveals_adaptations_for_milk_utilization_within_the_infant_microbiome NA NC_011593.1 ATGACTGCAGCAGTCGAAGAGACTGGCTTAGGGCAGGCGGCAGGTAAAGCCGCTACCTTGGTACGCGATTCGGTCAAGACCGTGATCGCCGCATCGATGGTCGGTACCGCCATCGAATTCTATGACTTCTACGCCTACGGCACCGCCGCGGCAAACTACTTCCCGCACATCTTCTTCTCCGCGAAGGACAACCCCACCGTCGCACTGCTGATGAGCTTGCTGACCTTCGCCATCGCCTTCATCGCCCGCCCGCTGGGCTCGCTGATCTTCGGCCACTTCGGCGATCGCATGGGCCGCAAGACCACGCTGGTCGTGAGCCTCATGACCATGGGTGTCGGCACCTTCCTGATTGGCTGCCTGCCCACCTACGATCAGGTCGGCGTTGGTGCAGTCGCCATCCTCTGCCTCCTGCGCTTCATCCAGGGCATCGGCCTGGGCGGCGAATGGTCCGGCGCGGCACTGGTCGCCACCGAGAACGCGCCTGAAGACAAGCGCGCACTGTACGGCTCCTTCCCGGAGCTGGGCGCGCCGATCGGCTTCTTCCTGTCCAACGGCACCTACTTCGTGCTCGAATCCTTCAACAATCAGGACGCGATGCTGGCTTGGGGCTGGCGTGTGCCGTTCCTGCTGTCCGCCATCCTGGTGATCGTCGGCCTCGTGGTTCGCGTTCACATGGAGGAGACCCCGATCTTCCGTATGGCTCAGGAGCAGAAGAAGGTCGTCAAGTCCCCGCTGACCGAGGTCTTCCGCAAGTCCTGGCGTCAGGTGCTGCAGGCCACCTTCCTCGTGGCCGTGACCTACACGCTGTTCTACACGCTCGCCACCTGGTCCCTCGCTTGGGGCACCAAGGAGCAGGGCGAAGGCGGCGGCGGCCTTGGCTTCACCAACCAGGAATACCTGCTCATGCTCATGATCTCCATCTGCGTGTTCGCCCTGTTCATCGTGCTGTCCTGCCTGTACGCGGACAAGATCGGCCGCAAGCGCGTGCTGACCTTCTCCTCCTGCGCACTCGTCGTGTTCGCCGTGCTCTTCCCGTTCCTGCTGGACGGTGGTCTGGTCGGGCAGAAGAACTTCCTCGCCAACATGGTGTTCCTGTGCGTTGGCTTTGCCCTGATGGGCGTCGCCTTCGGCCCGATCGGCGCGTTCCTGCCTGAACTGTTCGAGGCGAACGTGCGCTACTCCGGCTCCGGCATCGGCTACAATCTGGCCGCCATCGTCGGCGCGGCGTTCGTGCCGACCATCGCCACTTGGCTGAGCTCCCACTGGGGCGTCCACTCCGTGGGCCTCTACCTCGCCGTGATGGCCGTGTGCTGCCTGGTGTCGGTCCTGACCTGCCGTGAGACGAAGGACGCTGACTTTACCAAGTGA > 167 HMPREF0175_0275 COG:_COG0477;_Pfam:_PF00083;_InterPro:_IPR003663 sugar_transporter EEI81807.1 11 MAGLFRTASKQPNPLGTAIRTRGSGKYTFGLALSAGLAGLLYGYDTVSISGAIEFLRARYGLSTLMEGLVVSSIMLGAVIGAATAGFLSDRFGRKRILIIGGAFFLVAAVWSALTIGPIALIVARAAGGYGIGLTAALAVTYITESAPANIRGLLAFSYQLLAVCGIFLTNVINYIIASHGSNDWDIAAGWRWMLGLGAIPAAAFLLAMRRAPESPRFLIQIGRTDEGFAVLEHILGTERARLRTDDIQASVKLETEMSHEFHDLFRPGLRRALAIGIFLAVFNQFIGMNAISYYGPVMFSDLGFAGDTQFLAAASVGGVELVATVVGMYLIDTFGRKRLMEIGTGMMCVFALCISGSYFMGNSLLTLIFVMAFTISFAFSMGPIPWIVIPELFPTYLRGRATGLCVMCLLFANWIIAQFTPMMIDGLGGGISFAIFAVLDLICLFGIVALVPETMGRTLEEIEHLWQPKTDLAYAKYALSTADANIRHAEATLRRIENERQQALGIMDAAERARAAAQQKIFAIETAKRAEAERLEAQRAAEEAAKAAANMAAEEDTAATVSEVTTDENVPSLMRRTRGAVLVGKSSSRRHDGEYTDGSANGPADGSVDGSVTDSADGAMLDGAAAEAAASAAVAALADSLPDDPFTLANRPTTRSGADDTDSVDAADAVDSANDANRNRKQTNAVQPAHMASIGHAHSADMPRGVLLPSADEDSYSEHSFAETDDDREAQAINAALDSLDTLIRG high_GC_Gram+ Bifidobacterium_longum_subsp._longum_ATCC_55813 Bifidobacterium_longum_subsp._longum_ATCC_55813 ACHI01000005 306082..308325 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:2244 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_ATCC._The_genomic_DNA_wasprepared_from_a_single_bacterial_isolate._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data,_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data_and_at_least_10_fold_coverage_ofIllumina/Solexa_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_to_the_Illumina/Solexa_data_withmapping_tools_such_as_Mosaic_and_Crossmatch_and_these_data_wereused_for_error_correction_for_this_version_of_the_draft_assembly.This_draft_assembly_meets_the_HMP_draft_quality_standards_(morethan_90%_of_the_genome_is_included_in_contigs,_more_than_90%_of_acore_set_of_bacterial_genes_are_found_with_>_30%_identity_and_>_30%length;_more_than_90%_of_the_bases_in_the_assembly_have_more_than_5fold_sequence_coverage,_the_contig_N50_length_is_greater_than_5kb,the_scaffold_N50_length_is_greater_than_20kb,_and_there_is_lessthan_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_53xSequencing_Technology:_454;_ABI;_Solexa/IlluminaAnnotation_was_added_to_the_contigs_in_April_2009. NA 21-APR-2009 Bifidobacterium_longum_subsp._longum_ATCC_55813_contig00005,_whole_genome_shotgun_sequence. NA Bifidobacteriaceae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bifidobacterium_longum_C2GTC8_BIFLI.gb Tissieria 224798116 Submitted_(09-JAN-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACHI01000005 NA NA Bifidobacteriales_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 2244 NA genomic_DNA NA ATCC_55813 NA Bifidobacterium_longum_Reuter_1963 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA NA NA NA NA prokaryotes NA 548480 Bacteria,_Actinobacteria,_Actinobacteridae,_Bifidobacteriales,_Bifidobacteriaceae,_Bifidobacterium Direct_Submission NA ACHI01000005.1 TCAGCCTCTGATAAGGGTATCCAGAGAGTCGAGGGCCGCGTTGATGGCCTGAGCCTCGCGGTCGTCATCCGTCTCGGCGAAGGAATGCTCGCTGTAGGAATCCTCGTCGGCACTGGGCAACAACACTCCGCGAGGCATATCGGCACTGTGCGCGTGCCCAATAGAGGCCATATGTGCCGGCTGCACGGCATTTGTCTGCTTGCGGTTTCGATTCGCGTCATTCGCGGAATCAACGGCATCTGCGGCATCAACGCTATCTGTATCATCCGCACCACTGCGCGTAGTCGGCCGATTCGCCAGCGTGAATGGATCGTCGGGCAGTGAATCGGCCAAGGCCGCGACTGCTGCGCTGGCCGCTGCCTCGGCCGCCGCGCCGTCCAGCATCGCACCATCCGCAGAGTCAGTCACGGAGCCATCCACAGAGCCATCCGCAGGGCCGTTCGCAGAGCCGTCCGTATACTCACCGTCGTGCCGTCTACTGGATGACTTACCAACCAGAACAGCGCCCCTCGTACGCCGCATAAGCGACGGCACGTTCTCATCCGTCGTAACTTCCGAGACGGTCGCTGCCGTGTCTTCTTCTGCAGCCATATTCGCCGCTGCCTTGGCGGCTTCCTCGGCAGCGCGCTGCGCCTCCAGCCGTTCTGCCTCGGCCCTTTTGGCGGTCTCTATGGCGAAAATCTTCTGCTGTGCCGCAGCGCGAGCCCGCTCAGCCGCATCCATAATGCCCAATGCCTGCTGACGTTCGTTTTCAATACGACGCAGCGTGGCTTCCGCGTGGCGGATATTCGCATCAGCCGTGCTCAGCGCGTATTTTGCGTAGGCCAAATCGGTTTTCGGCTGCCATAGATGCTCGATTTCCTCCAGCGTGCGTCCCATTGTCTCCGGCACCAACGCCACGATGCCGAACAGGCAAATCAGATCCAGAACCGCGAAAATCGCGAACGATATGCCGCCGCCCAATCCATCGATCATCATCGGCGTGAATTGTGCGATGATCCAGTTGGCGAACAGCAGACACATCACACACAATCCGGTGGCGCGACCGCGCAGATACGTGGGGAAGAGCTCGGGAATCACAATCCAGGGAATCGGTCCCATCGAAAAGGCGAACGATATGGTGAACGCCATGACGAATATAAGCGTCAGCAGCGAATTGCCCATGAAATACGAGCCCGAAATGCATAGCGCGAACACGCACATCATGCCGGTGCCTATTTCCATAAGACGTTTACGGCCGAACGTGTCGATCAGGTACATGCCTACCACGGTGGCCACCAGCTCCACGCCGCCTACGCTGGCGGCCGCGAGGAACTGAGTGTCCCCGGCGAACCCGAGATCCGAGAACATCACCGGCCCATAGTAGGAAATGGCGTTCATGCCGATGAACTGGTTGAACACGGCGAGAAAGATGCCGATGGCGAGTGCCCGTCGCAGGCCTGGACGGAACAAATCATGGAATTCGTGCGACATCTCGGTTTCCAGTTTGACCGAGGCTTGGATGTCATCGGTGCGCAGGCGTGCGCGTTCGGTGCCGAGGATGTGCTCGAGCACCGCGAAACCTTCATCGGTTCTGCCTATCTGAATGAGGAATCGTGGGCTTTCCGGTGCCCTCCGCATAGCCAGCAGGAAGGCGGCGGCCGGAATCGCGCCTAATCCCAGCATCCAGCGCCATCCAGCGGCGATATCCCAGTCGTTTGATCCGTGGGAGGCGATGATGTAGTTGATGACGTTGGTCAGGAAGATACCGCAAACCGCAAGCAGCTGATAAGAGAAGGCGAGCAGACCACGGATGTTGGCCGGAGCCGATTCGGTGATGTATGTGACGGCCAGCGCGGCGGTCAGGCCGATGCCGTAGCCGCCGGCCGCGCGCGCCACGATAAGCGCTATGGGACCTATCGTCAGCGCACTCCATACAGCCGCAACGAGGAAGAACGCGCCGCCGATAATAAGGATACGTTTCCTGCCGAATCGGTCGGAAAGGAATCCGGCGGTGGCCGCTCCGATGACGGCACCGAGCATGATGGAGGAAACGACGAGGCCCTCCATGAGAGTACTGAGCCCGTATCTGGCGCGCAGGAATTCGATGGCACCGGAGATGGAGACGGTGTCGTAGCCGTACAGTAATCCGGCAAGACCCGCACTCAAAGCCAGTCCGAATGTATATTTTCCTGATCCGCGGGTGCGTATGGCTGTTCCTAAAGGATTGGGCTGCTTGGAAGCAGTCCGAAACAGTCCCGCCAT > 168 BIL_03860 NA MFS_transporter,_sugar_porter_(SP)_family CBK70044.1 11 MTTTPASPVSKQTASAAQETSATGAAATAIETIETGVAGVAGAATNAAANAIEDLEAAESRDFSTRFPLNSAFIFTFGALGGMLFGFDTGIISGASPLIESDFGLSVSQTGFITSSVLIGSCAGALSIGALSDRFGRKKLLIVSALLFLLGSGLCASSTGFAMMVCARIILGLAVGAASALTPAYLAELAPKERRGSLSTLFQLMVTFGILLAYASNLGFLNHNLFGIRDWRWMLGSALVPAALLLLGGLLLPESPRYLVNKGDTCNAFKVLTLIRKDVDQTQVQIELDEIKAVAAQDTKGGVRELFRIARPALVAAIGIMLFQQLVGINSVIYFLPQVFIKGFGFPEGDAIWVSVGIGVVNFVSTIVATLIMDRFPRKGVLIFGSIVMTVSLAVLAVMNFVGDVAVLAVPTMILIAFYILGFAVSWGPIAWVLIGEIFPLSVRGIGSSFGSAANWLGNFIVSQFFLVLLDAFGNNVGGPFAIFGVFSALSIPFVMRLVPETNGKSLEEIEEEMTKR high_GC_Gram+ Bifidobacterium_longum_subsp._longum_F8 Bifidobacterium_longum_subsp._longum_F8 FP929034 448658..450211 Pajon,A.,_Turner,K.,_Parkhill,J.,_Duncan,S._and_Flint,H. NA 0:1554 This_is_a_reference_genome_for_the_metaHIT_project_DNA_source:Rowett_Institute_of_Nutrition_and_Health,_University_of_Aberdeen_--http://www.rowett.ac.uk/divisions/ghp/_Sequencing_technology:_454Genome_coverage:_45xAnnotation_was_added_using_ab_initio_prediction_IMG/ER_--http://img.jgi.doe.gov/submit_(Markowitz,_Szeto_et_al._2007). NA 10-JAN-2011 Bifidobacterium_longum_subsp._longum_F8_draft_genome. NA Bifidobacteriaceae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bifidobacterium_longum_D6DC23_BIFLO.gb Tissieria 291516109 Unpublished NA FP929034 NA NA Bifidobacteriales_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1554 NA genomic_DNA NA F8 NA Bifidobacterium_longum_Reuter_1963 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA NA NA NA NA prokaryotes NA 722911 Bacteria,_Actinobacteria,_Actinobacteridae,_Bifidobacteriales,_Bifidobacteriaceae,_Bifidobacterium The_genome_sequence_of_Bifidobacterium_longum_longum_F8 NA FP929034.1 ATGACGACGACACCGGCATCACCCGTATCGAAACAGACGGCATCCGCGGCGCAGGAAACCAGCGCAACCGGGGCGGCGGCCACCGCAATCGAAACCATCGAAACCGGCGTGGCCGGAGTGGCGGGCGCGGCCACAAACGCGGCAGCAAACGCAATCGAGGACCTCGAAGCCGCCGAATCACGCGACTTCTCCACGCGCTTCCCGCTCAACAGCGCATTCATCTTCACCTTCGGCGCGCTCGGCGGCATGCTGTTCGGTTTCGACACCGGCATTATCTCCGGTGCCTCCCCGCTTATCGAATCAGACTTCGGCCTGAGCGTCTCCCAGACCGGCTTCATCACCTCCTCGGTGCTGATCGGCTCGTGCGCAGGTGCGTTGTCGATCGGCGCGCTGTCTGACCGGTTCGGCCGCAAGAAGCTGCTCATCGTCTCCGCGCTGCTGTTCCTGCTCGGCTCAGGCCTGTGCGCCTCCTCCACCGGATTCGCGATGATGGTGTGCGCCCGCATCATCCTGGGCCTCGCGGTCGGCGCGGCTTCTGCCCTGACCCCGGCGTACTTGGCCGAACTGGCGCCGAAGGAGCGTCGCGGCTCGCTGTCCACGCTCTTCCAGCTCATGGTCACCTTCGGCATTCTGCTGGCCTACGCCTCCAACCTCGGATTCCTGAACCACAACCTCTTCGGCATCCGCGACTGGCGCTGGATGCTCGGTTCGGCGCTGGTGCCGGCCGCCTTGTTGCTGCTCGGCGGCCTGCTGCTGCCCGAATCCCCGCGTTATCTGGTGAACAAGGGCGACACCTGCAACGCCTTCAAAGTGCTTACGCTGATTCGCAAGGACGTGGATCAGACCCAGGTGCAGATTGAGCTGGACGAAATCAAGGCCGTGGCCGCACAGGACACCAAGGGTGGCGTGCGCGAACTGTTCCGTATCGCTCGTCCGGCGCTGGTGGCCGCCATTGGCATCATGCTGTTCCAGCAGCTCGTGGGCATCAACTCGGTGATCTACTTCCTGCCGCAGGTGTTCATCAAGGGCTTCGGCTTCCCTGAAGGCGACGCGATCTGGGTGTCGGTGGGCATCGGCGTGGTGAACTTCGTGAGCACCATCGTGGCCACGCTTATCATGGATCGTTTCCCGCGCAAGGGCGTGCTGATCTTCGGTTCCATCGTGATGACCGTTTCGCTCGCAGTGCTCGCCGTGATGAACTTCGTGGGCGACGTGGCCGTGCTGGCCGTGCCGACGATGATTCTCATCGCTTTCTATATCCTCGGCTTTGCGGTCTCGTGGGGCCCGATCGCCTGGGTGCTTATCGGCGAGATCTTCCCGCTGAGCGTGCGCGGCATCGGCTCCTCCTTCGGCTCGGCGGCGAACTGGCTGGGCAACTTCATCGTCTCCCAGTTCTTCCTCGTGCTGCTCGATGCGTTCGGCAACAATGTGGGCGGCCCGTTCGCGATTTTCGGCGTGTTTTCGGCCCTGTCCATCCCGTTCGTGATGCGCTTGGTGCCCGAGACCAACGGCAAGTCGCTGGAGGAAATCGAGGAGGAAATGACCAAGCGCTAG > 169 BLJ_1223 NA sugar_transporter YP_003661504.1 11 MSTTTPAQPAQLTRNERLDRLPFNKAHRKLLVASGIGWAFDAMDVGLVSFVVAAIAADPHFNLTPTEKSWVLSIGFVGMAIGAAVGGFIADRVGRKTVFTATLIIFGIANGAMALSWSLGMLLGARLIIGLGLGAELPVASTLVSEFSPTKQRGRMTVLLESFWAVGWIIAAIIGYFVIPNTGDWGWRWALAIGALPLLYAIVTRVHIPESVRFLEAKGREDEAEKAVRYFEEAGGVAPVTSPKGKPLTKIKTRELFGSKYLARTIAIWATWFFVNFSYYGAFTWMPSLLADQFGSLTKSFGYTLAISIAQLPGYFLAAWLVEVWGRRKTLSIFLVVSAVAAFAFSQAGSAALVLVFGMLLSASNLGAWGVLYAVTPEIYPTRLRGAAAGAAAAVGRIAAIIAPLLMPWFLTLSGGNKAVAFIIFAAAFILACIAALCLPERKGLNLED high_GC_Gram+ Bifidobacterium_longum_subsp._longum_JDM301 Bifidobacterium_longum_subsp._longum_JDM301 NC_014169 1433223..1434572 Wei,Y.X.,_Zhang,Z.Y.,_Liu,C.,_Zhu,Y.Z.,_Zhu,Y.Q.,_Zheng,H.,_Zhao,G.P.,_Wang,S._and_Guo,X.K. NA 0:1350 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002010.Source_DNA_is_available_from_Department_of_Medical_Microbiology_andParasitology,_Shanghai_Jiao_Tong_University_School_of_Medicine.Email:Weiyx2007@yahoo.cn.COMPLETENESS:_full_length. NA 01-AUG-2010 Bifidobacterium_longum_subsp._longum_JDM301_chromosome,_complete_genome. NA Bifidobacteriaceae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bifidobacterium_longum_D6ZUW8_BIFLJ.gb Tissieria 296453187 J._Bacteriol._192_(15),_4076-4077_(2010) NA NC_014169 NA NA Bifidobacteriales_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 20525832 1350 NA genomic_DNA NA JDM301 NA Bifidobacterium_longum_Reuter_1963 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA NA NA NA NA prokaryotes NA 759350 Bacteria,_Actinobacteria,_Actinobacteridae,_Bifidobacteriales,_Bifidobacteriaceae,_Bifidobacterium Complete_genome_sequence_of_Bifidobacterium_longum_JDM301 NA NC_014169.1 TCAGTCTTCGAGATTGAGGCCTTTGCGCTCGGGCAAGCAGAGGGCTGCTATGCAGGCGAGGATGAAGGCGGCGGCGAAGATGATGAAGGCCACGGCCTTGTTGCCGCCGGACAGGGTCAGGAACCACGGCATGAGGAGCGGCGCGATGATGGCGGCGATGCGGCCCACCGCGGCGGCGGCACCGGCGGCCGCGCCACGCAGGCGGGTCGGGTAGATTTCCGGGGTCACGGCGTACAACACGCCCCACGCACCGAGGTTGGAGGCGGACAGCAGCATGCCGAACACGAGCACGAGGGCCGCTGATCCGGCCTGCGAGAACGCGAAGGCGGCCACGGCGGAGACGACCAGGAAGATGCTCAGCGTCTTGCGGCGGCCCCAGACCTCCACCAGCCAGGCGGCCAGGAAGTAACCGGGCAGCTGGGCGATGGAGATGGCGAGCGTGTAGCCGAATGACTTGGTCAGGGAGCCAAACTGGTCGGCGAGCAGCGACGGCATCCATGTGAACGCGCCGTAGTAGGAGAAGTTCACGAAGAACCACGTGGCCCAGATGGCGATGGTGCGGGCCAGGTACTTGGAGCCGAACAGCTCGCGCGTCTTGATCTTCGTCAGCGGCTTGCCCTTGGGAGAGGTTACCGGGGCCACTCCCCCGGCTTCCTCGAAGTAGCGCACGGCCTTTTCGGCTTCGTCTTCGCGACCCTTGGCTTCGAGGAATCGCACGGATTCTGGGATGTGTACACGGGTGACAATCGCGTAGAGCAGTGGCAGCGCGCCGATGGCCAGCGCCCAGCGCCAGCCCCAGTCACCGGTGTTCGGGATCACGAAGTAGCCGATTATGGCGGCGATGATCCAGCCGACGGCCCAGAACGATTCCAGCAGCACGGTCATGCGGCCGCGCTGTTTGGTCGGCGAAAACTCGGAGACCAGCGTGGAGGCGACCGGTAGTTCCGCGCCCAAGCCCAGTCCGATGATCAGTCGGGCGCCGAGCAGCATGCCGAGCGACCAGGACAGCGCCATGGCGCCGTTGGCGATGCCGAAGATGATCAGCGTGGCGGTGAACACGGTTTTGCGGCCCACGCGGTCGGCGATGAAGCCGCCCACCGCCGCGCCGATGGCCATGCCGACGAAGCCGATGGACAGCACCCACGACTTTTCGGTCGGGGTGAGGTTGAAGTGCGGGTCGGCTGCGATGGCGGCGACCACGAAGGAAACGAGGCCGACGTCCATGGCGTCGAATGCCCAGCCGATGCCGGAGGCGACGAGGAGTTTACGGTGCGCCTTGTTGAAGGGCAGCCGGTCGAGGCGCTCGTTGCGGGTGAGCTGCGCGGGTTGCGCTGGAGTGGTGGTGCTCAC > 170 BPP1095 ortholog_of_Bordetella_pertussis_(BX470248)_BP2732 membrane_transport_protein NP_883414.1 11 MSTTTQHPGYAPATPHPGSSGGASHSHVAPGEIAVGVVIGRASEYFDFFVFGIACVLVFPSVFFPFESELDGMLWAFVIFSFAFIARPFGTALSMAVQRRWGRGAKLTAALFLLGTATCGMAFLPGYDAIGMYAILLLSLFRCLQGLALGGSWDGLPSLLALNAPAGRRGWYAMLGQLGAPIGFMIASALFLFLFLISTLARDDFLDWGWRYPFFVAFAINVVALFARLRLVVTEEYTQLMEEGELEPIRTTEMLREQGYNMLIGAFAALASYALFHLVTVFPLSWIAAGASQMSGDVLVVQIAGAALAIVCTLASGWLADRIGRRTTLGLMALLIGVFALFTPWLLGGGPLAQDAFILIGFALLGLSYGQASGTVTANFIRRFRYTGAAFTADMAWLLGAAFAPLVALGLSARFGLVAVSVYLLSGVACTLLALRVNRLLETRD beta_subgroup Bordetella_parapertussis_12822 Bordetella_parapertussis_12822 NC_002928 1167938..1169275 Parkhill,J.,_Sebaihia,M.,_Preston,A.,_Murphy,L.D.,_Thomson,N.,_Harris,D.E.,_Holden,M.T.,_Churcher,C.M.,_Bentley,S.D.,_Mungall,K.L.,_Cerdeno-Tarraga,A.M.,_Temple,L.,_James,K.,_Harris,B.,_Quail,M.A.,_Achtman,M.,_Atkin,R.,_Baker,S.,_Basham,D.,_Bason,N.,_Cherevach,I.,_Chillingworth,T.,_Collins,M.,_Cronin,A.,_Davis,P.,_Doggett,J.,_Feltwell,T.,_Goble,A.,_Hamlin,N.,_Hauser,H.,_Holroyd,S.,_Jagels,K.,_Leather,S.,_Moule,S.,_Norberczak,H.,_ONeil,S.,_Ormond,D.,_Price,C.,_Rabbinowitsch,E.,_Rutter,S.,_Sanders,M.,_Saunders,D.,_Seeger,K.,_Sharp,S.,_Simmonds,M.,_Skelton,J.,_Squares,R.,_Squares,S.,_Stevens,K.,_Unwin,L.,_Whitehead,S.,_Barrell,B.G._and_Maskell,D.J. NA 0:1338 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_BX470249.On_Aug_12,_2003_this_sequence_version_replaced_gi:27532921.COMPLETENESS:_full_length. NA 21-JAN-2012 Bordetella_parapertussis_12822_chromosome,_complete_genome. NA Alcaligenaceae_De_Ley_et_al._1986 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bordetella_parapertussis_Q7WBB0_BORPA.gb Bordetella_Moreno-Lopez_1952_(Approved_Lists_1980)_emend._Von_Wintzingerode_et_al._2001 33594723 Nat._Genet._35_(1),_32-40_(2003) NA NC_002928 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 12910271 1338 NA genomic_DNA NA 12822 NA Haemophilus_parapertussis NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 257311 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Alcaligenaceae,_Bordetella Comparative_analysis_of_the_genome_sequences_of_Bordetella_pertussis,_Bordetella_parapertussis_and_Bordetella_bronchiseptica NA NC_002928.3 ATGTCGACCACCACGCAGCATCCCGGCTATGCCCCTGCAACGCCCCATCCGGGCTCCTCGGGCGGCGCCAGCCACTCGCACGTGGCGCCTGGCGAGATCGCGGTCGGCGTCGTCATCGGCAGGGCCTCCGAATACTTCGATTTCTTCGTCTTCGGCATCGCCTGCGTGCTGGTGTTTCCCAGCGTGTTCTTTCCGTTCGAGAGCGAACTCGACGGCATGCTGTGGGCGTTCGTGATTTTCTCGTTCGCCTTCATCGCGCGCCCGTTCGGCACCGCGCTGTCGATGGCGGTGCAGCGGCGCTGGGGGCGCGGCGCCAAGCTGACCGCGGCCCTGTTCCTGCTGGGCACGGCGACCTGCGGCATGGCGTTCCTGCCCGGCTACGACGCCATCGGCATGTACGCGATCCTGCTGCTCAGCCTGTTCCGCTGCCTGCAGGGCCTGGCGCTGGGCGGTTCGTGGGATGGCCTGCCTTCGCTGCTGGCGTTGAACGCGCCGGCGGGGCGGCGCGGCTGGTACGCCATGCTGGGCCAGCTGGGCGCGCCCATCGGCTTCATGATCGCCAGCGCCCTGTTCCTGTTCCTGTTCCTCATCTCGACGCTGGCCCGCGACGACTTCCTCGACTGGGGATGGCGCTATCCCTTCTTCGTCGCCTTCGCCATCAACGTGGTCGCGCTGTTCGCGCGCCTGCGGCTGGTCGTGACCGAGGAATACACCCAGTTGATGGAAGAGGGCGAACTCGAGCCGATCCGCACCACGGAGATGTTGCGCGAGCAAGGCTACAACATGCTGATCGGCGCGTTCGCGGCGCTGGCCAGCTATGCGCTGTTCCACCTGGTGACGGTGTTCCCGCTGTCGTGGATCGCGGCCGGCGCCAGCCAGATGAGCGGCGACGTGCTGGTGGTGCAGATCGCCGGCGCGGCGCTGGCCATCGTGTGCACCCTGGCCTCGGGCTGGCTGGCCGACCGCATCGGCCGGCGCACCACGCTGGGCCTGATGGCGCTGCTGATCGGCGTGTTCGCGCTGTTCACGCCCTGGCTGCTGGGCGGCGGGCCGCTGGCGCAGGATGCCTTCATCCTGATCGGCTTCGCGCTGCTCGGGTTGTCGTACGGGCAGGCCTCGGGCACGGTGACGGCCAACTTCATCCGCCGTTTCCGCTATACCGGCGCCGCGTTCACGGCCGACATGGCCTGGCTGCTGGGCGCGGCGTTCGCGCCGCTGGTGGCGCTGGGGCTGTCGGCGCGCTTCGGCCTGGTGGCCGTCAGCGTCTACCTGCTGTCGGGCGTGGCCTGCACGCTGCTGGCGCTGCGCGTCAACCGCCTGCTGGAAACGCGCGACTAG > 171 Bpet1265 NA transporter YP_001629869.1 11 MSHVAARLERIPFCRPHFKLLLMGGLGFAFEALDAGIIAFILPVLRTQWSLSSLEVGFLASSTYIGFLIGALLAGLLGDRFGRRGVMMWALAIFCVMSIANAMTHDWHLFFLFRMLAGIGMGAEGAIIAPFLAEFVASRYRGRFTGSLAGFFSFGFVIAALLGYFIVPLSDNGWRWVLVISAVPVVVLLWWRHALDESPRWLESQGRHDEADAVVSRFEARAQRALGRALPAVAPQAETQVPVARAKESFSAQLKTLWSPAWRGVTAMTWTFWLSITFCSYAFFTWIPGLLVQQGMTITKSFGYSIAIYLAQIPGYYSAAYFNDKIGRKYTIVMYMAFACASAMALVFVKDPTHVLIASVLLSFGMNGVNAGQYAYTPELYPTSMRATGMGAASSFARLGAIASPTLVGAIYPILGFGGVFGMTTVVLLTGAVVVLFFGVNTNNRTLEDISRTRQEQAHS beta_subgroup Bordetella_petrii_DSM_12804 Bordetella_petrii_DSM_12804 NC_010170 1328691..1330073 Gross,R.,_Guzman,C.A.,_Sebaihia,M.,_dos_Santos,V.A.,_Pieper,D.H.,_Koebnik,R.,_Lechner,M.,_Bartels,D.,_Buhrmester,J.,_Choudhuri,J.V.,_Ebensen,T.,_Gaigalat,L.,_Herrmann,S.,_Khachane,A.N.,_Larisch,C.,_Link,S.,_Linke,B.,_Meyer,F.,_Mormann,S.,_Nakunst,D.,_Ruckert,C.,_Schneiker-Bekel,S.,_Schulze,K.,_Vorholter,F.J.,_Yevsa,T.,_Engle,J.T.,_Goldman,W.E.,_Puhler,A.,_Gobel,U.B.,_Goesmann,A.,_Blocker,H.,_Kaiser,O._and_Martinez-Arias,R. NA 0:1383 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM902716.COMPLETENESS:_full_length. NA 24-JAN-2012 Bordetella_petrii_DSM_12804_chromosome,_complete_genome. NA Alcaligenaceae_De_Ley_et_al._1986 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bordetella_petrii_A9IDR8_BORPD.gb Bordetella_Moreno-Lopez_1952_(Approved_Lists_1980)_emend._Von_Wintzingerode_et_al._2001 163854304 BMC_Genomics_9,_449_(2008) NA NC_010170 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 18826580 1383 NA genomic_DNA NA DSM_12804 NA Bordetella_petrii_von_Wintzingerode_et_al._2001 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 340100 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Alcaligenaceae,_Bordetella The_missing_link:_Bordetella_petrii_is_endowed_with_both_the_metabolic_versatility_of_environmental_bacteria_and_virulence_traits_of_pathogenic_Bordetellae NA NC_010170.1 TCAAGAATGCGCCTGCTCCTGCCTGGTGCGGGAAATATCCTCGAGCGTGCGGTTGTTGGTGTTCACGCCGAAAAACAACACGACCACTGCACCTGTCAGCAGGACGACGGTGGTCATGCCGAACACGCCGCCAAAGCCCAGGATGGGATAGATGGCGCCCACCAGCGTAGGCGAGGCGATGGCGCCCAAACGAGCGAACGACGAGGCCGCACCCATGCCGGTCGCGCGCATGCTGGTCGGATACAGCTCGGGGGTGTAGGCGTACTGGCCCGCGTTCACGCCGTTCATGCCGAACGACAGCAAAACCGAGGCGATCAACACGTGGGTCGGGTCCTTGACGAAGACCAGCGCCATCGCGCTGGCGCAGGCAAACGCCATGTACATGACGATCGTGTACTTGCGGCCGATCTTGTCGTTGAAGTATGCGGCCGAGTAGTAGCCGGGAATCTGGGCAAGATAGATGGCGATGGAGTAGCCGAAGCTCTTGGTGATAGTCATGCCTTGCTGCACCAGCAGGCCCGGGATCCACGTGAAGAAGGCGTACGAGCAGAACGTGATCGACAGCCAGAAGGTCCAGGTCATGGCCGTCACGCCGCGCCAGGCGGGCGACCACAGCGTTTTTAATTGTGCGCTGAACGATTCCTTTGCTCGGGCGACCGGCACCTGCGTCTCGGCCTGCGGTGCCACGGCGGGCAGGGCCCTTCCCAGTGCGCGTTGGGCACGGGCTTCGAAACGGCTGACGACCGCGTCGGCCTCATCATGTCGGCCCTGGCTCTCCAGCCAGCGCGGTGACTCGTCCAGCGCATGGCGCCACCACAGTAGAACCACCACGGGCACCGCGCTGATCACCAGGACCCAGCGCCAGCCGTTGTCCGACAGCGGCACGATGAAATAGCCCAGCAGCGCGGCGATCACAAAGCCGAAGGAGAAAAAGCCCGCCAGTGAGCCCGTGAAGCGGCCACGGTAGCGGCTGGCCACGAACTCGGCCAGAAAGGGCGCGATGATCGCGCCTTCGGCGCCCATGCCGATGCCGGCCAGCATGCGGAACAGGAAGAACAGGTGCCAGTCGTGCGTCATGGCATTGGCGATGGACATGACGCAGAAGATCGCCAGCGCCCACATCATCACGCCGCGTCGCCCGAAGCGGTCGCCCAAGAGGCCCGCCAGCAGCGCGCCGATCAGAAAGCCGATATAGGTGCTGCTGGCCAGGAAGCCCACTTCCAGGCTGCTTAGGCTCCACTGGGTGCGCAGCACGGGTAGGATGAACGCGATGATGCCCGCGTCCAGCGCTTCGAACGCGAAGCCCAAGCCGCCCATCAGCAGCAGTTTGAAGTGGGGCCGGCAGAACGGAATACGTTCGAGTCTTGCAGCGACATGCGACAT > 172 BC1G_01506 NA hypothetical_protein XP_001559947.1 NA MFTKTKRVKFSLKGIGIKKPEGVAGSSAFAILVGLFVAFGGVLFGYDTGTIGGIITMRYWLDTFSTGYIDPKTGQLGITSSESSLIVSILSAGTLFGALFAAPVADWTGRRIALWIVLCVFAFGVIMQTASVDIALFVAGRFFAGFGVGMVSMLVGAYQLAITIGLLLAAVVDNATKDLDNTGSYRIPIAVQFAWVLILGTGLIFLPETPRYLIKRGRHDKAAKSLGRLRRLDINDPHLVGELQEIESNYVHEQSCCLQALQQLTGINFIFYYGTSFFAASGIKEPFVTSMITSSVNVFSTLPGLYLVEAWGRRRLLIFGALGMFACQMIVGSVGTAFPNGDNIAAQKALVAFVCIYIFFFASSWGPVGWIIPGEIFPLPVRAKGISMTTASNWLLNWAIAYSTPYLVNPGPGNANLQAKIFFVWGGCCLLCAVFVYFLIYETKGLSLEEVDELYESVGKAWKSTHWVPVEGYGREWRGGENGNGAGNGAGNGTGMGNDNGVMARGGATSAEHKEEVA Leotiomycetes Botryotinia_fuckeliana_B05.10 Botryotinia_fuckeliana_B05.10 XM_001559897 NA Birren,B.,_Galagan,J.,_Lander,E.,_Devon,K.,_Nusbaum,C.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_OLeary,S.,_Amedeo,P.,_Briggs,S.,_Baker,S.,_Goff,S.,_Hohn,T.,_Hutchison,D.,_Lam,S.,_Martin,C.,_Miguel,T.,_Rose,M.,_Turgeon,B.G.,_Wu,G.,_Yoder,O._and_Zheng,L. NA 0:1557 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001814568).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Botryotinia_fuckeliana_B05.10_hypothetical_protein_(BC1G_01506)_partial_mRNA. NA Sclerotiniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Botryotinia_fuckeliana_A6RM34_BOTFB.gb Botryotinia 154321262 Unpublished fungi XM_001559897 NA NA Leotiales sac_fungi NA 1557 NA mRNA NA B05.10 NA Sclerotinia_fuckeliana NA forward NA NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 332648 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Leotiomycetes,_Helotiales,_Sclerotiniaceae,_Botryotinia Annotation_of_the_Botryotinia_fuckeliana_B05.10_genome NA XM_001559897.1 ATGTTTACGAAAACCAAACGAGTGAAGTTCAGTCTCAAGGGGATCGGAATTAAAAAGCCGGAGGGAGTAGCAGGCTCATCTGCCTTTGCTATTCTCGTGGGCCTGTTTGTGGCATTCGGTGGAGTGCTTTTCGGATACGACACCGGAACAATCGGTGGCATCATAACCATGCGCTATTGGCTGGATACCTTCTCTACAGGATACATTGATCCCAAAACTGGTCAACTCGGCATTACTTCTAGTGAATCATCCTTGATAGTATCAATCCTATCTGCGGGAACACTCTTTGGTGCTCTATTTGCTGCACCAGTTGCTGATTGGACGGGAAGGCGCATTGCACTTTGGATTGTTCTATGTGTTTTTGCCTTTGGTGTCATAATGCAGACAGCTTCAGTTGATATTGCGTTGTTTGTGGCAGGAAGGTTTTTTGCTGGGTTTGGGGTTGGTATGGTTTCGATGCTAGTGGGTGCCTATCAACTTGCCATCACAATTGGATTGTTACTTGCGGCGGTTGTTGACAATGCTACCAAAGATCTCGACAATACCGGATCATACAGAATCCCAATTGCAGTTCAGTTTGCCTGGGTTCTTATATTAGGGACGGGACTTATCTTCCTCCCCGAAACACCTCGTTATCTGATTAAACGTGGCAGACACGATAAAGCGGCAAAGTCGCTTGGTAGACTTCGAAGACTGGATATCAATGATCCCCACTTGGTTGGCGAGCTTCAAGAAATCGAGTCCAACTATGTTCACGAGCAAAGTTGCTGCCTTCAAGCTCTTCAACAGCTAACTGGAATAAACTTCATTTTCTACTATGGCACTTCATTCTTTGCCGCCTCCGGAATTAAAGAACCTTTCGTCACGAGTATGATCACATCATCCGTCAACGTCTTCTCCACACTTCCTGGCCTCTATCTCGTCGAAGCATGGGGCCGACGTCGTCTCCTCATTTTCGGCGCTCTCGGAATGTTCGCCTGCCAAATGATAGTCGGTAGCGTCGGCACCGCCTTCCCCAACGGAGACAACATCGCGGCGCAAAAAGCGCTCGTGGCATTCGTATGCATCTACATATTTTTCTTCGCCAGCAGCTGGGGACCCGTAGGCTGGATTATCCCGGGAGAGATCTTCCCACTCCCTGTGCGCGCGAAAGGGATTTCCATGACGACTGCTTCGAATTGGCTTTTGAACTGGGCAATTGCGTATTCGACGCCTTATTTGGTGAATCCTGGACCGGGGAATGCGAATCTGCAGGCGAAGATTTTCTTTGTGTGGGGCGGTTGCTGTTTGTTGTGTGCGGTGTTTGTGTATTTTTTGATTTATGAGACGAAGGGGTTGAGTTTGGAGGAGGTGGATGAGTTGTATGAGAGTGTGGGGAAGGCGTGGAAGAGTACGCATTGGGTGCCGGTGGAGGGGTATGGGAGGGAGTGGAGAGGAGGGGAGAATGGGAATGGGGCTGGGAATGGGGCTGGGAATGGGACTGGGATGGGGAATGATAATGGTGTTATGGCGCGGGGAGGGGCGACGTCTGCTGAGCATAAGGAGGAAGTTGCTTGA > 173 BC1G_09068 similar_to_hexose_transporter hypothetical_protein XP_001552597.1 NA MARFGRNGNGGVDNSHPSTVVNSGNNSMEATTGARAFNANSEKGVHQYENLHVPSVTLRTIFMTILVAMGGFIFGYDTGQISGFLEMEVFLQRFGQRTTNLVKYPTGYYFTNVRSGLIVGLLSIGTLIGCLIAGPLANRFGRRTCIPPWCMVFCVGVVAQMAVGTGDWVGIAMGRWCAGLGVGGLSVLVPMYMAETSPVPVRGAVISCYQLFITIGIFTADCINYGTEGFSSTASYRIPMGVGFIWAIILGVGILFLPETPRYDFNHNNGTKARTTMAGFYGVDESHPMIETEVAEIEKVRIASSGNHPWYEAITGPRMLYRVSLAMALQMLQQLTGANYFFYYGTTIFAGVGIKNSYVTAMILGGVNVGATFFGVYMARHFRRRESLYIAALWQTMCFLIFASVGQFLFKDAAEGSATAKTAGSVMIVFACLFIVGFASTWGPLVWACIGEMFPYRYRAVAMAFATSANWFWNFMLAFFTPFITNDIQYAYGYVFAGCNLAAFFVVFFFLVESSGRTLEEVDAMYLLEVKPIGSHAYVFDAATMATLGTDINTDAMNLETRNGKLQKVNEAGQGGVLHDEGIPAGNQSPKY Leotiomycetes Botryotinia_fuckeliana_B05.10 Botryotinia_fuckeliana_B05.10 XM_001552547 NA Birren,B.,_Galagan,J.,_Lander,E.,_Devon,K.,_Nusbaum,C.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_OLeary,S.,_Amedeo,P.,_Briggs,S.,_Baker,S.,_Goff,S.,_Hohn,T.,_Hutchison,D.,_Lam,S.,_Martin,C.,_Miguel,T.,_Rose,M.,_Turgeon,B.G.,_Wu,G.,_Yoder,O._and_Zheng,L. NA 0:1779 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001814518).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Botryotinia_fuckeliana_B05.10_hypothetical_protein_(BC1G_09068)_partial_mRNA. NA Sclerotiniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Botryotinia_fuckeliana_A6S7T6_BOTFB.gb Botryotinia 154304384 Unpublished fungi XM_001552547 NA NA Leotiales sac_fungi NA 1779 NA mRNA NA B05.10 NA Sclerotinia_fuckeliana NA forward NA NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 332648 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Leotiomycetes,_Helotiales,_Sclerotiniaceae,_Botryotinia Annotation_of_the_Botryotinia_fuckeliana_B05.10_genome NA XM_001552547.1 ATGGCTCGCTTTGGTCGCAATGGCAATGGCGGTGTCGATAATAGCCATCCATCAACTGTTGTCAACTCAGGGAATAACTCGATGGAAGCTACAACTGGAGCAAGGGCTTTCAATGCCAATTCAGAAAAGGGTGTTCACCAATACGAAAATCTTCATGTTCCTTCCGTTACTCTGCGCACTATATTCATGACCATCTTGGTTGCAATGGGTGGATTTATCTTTGGTTATGATACTGGACAAATTTCTGGTTTCTTGGAGATGGAAGTTTTCCTTCAGAGATTTGGTCAACGAACTACGAACTTAGTAAAATATCCTACTGGGTACTATTTTACAAATGTGCGATCTGGATTAATTGTTGGCTTGTTATCCATCGGTACCTTGATCGGATGTTTGATTGCTGGACCTCTTGCCAATAGATTTGGACGCAGAACGTGTATTCCACCTTGGTGTATGGTGTTTTGTGTCGGTGTTGTTGCACAAATGGCGGTTGGCACTGGTGATTGGGTAGGAATTGCAATGGGAAGATGGTGTGCTGGTTTGGGAGTTGGTGGATTATCGGTCCTTGTACCAATGTACATGGCTGAGACTTCCCCTGTCCCTGTAAGAGGAGCCGTCATTTCATGTTACCAACTCTTCATTACTATCGGAATCTTCACCGCAGACTGTATCAACTATGGAACCGAAGGATTTAGCAGCACGGCATCTTACAGAATTCCCATGGGCGTTGGATTTATCTGGGCAATTATCCTTGGCGTTGGAATCCTCTTCCTTCCGGAGACTCCCAGATACGATTTCAATCATAACAATGGCACAAAGGCTCGAACCACCATGGCTGGCTTCTATGGCGTCGACGAAAGTCACCCAATGATTGAGACCGAGGTAGCCGAAATCGAGAAAGTTCGCATAGCATCCAGCGGTAATCACCCATGGTATGAAGCCATCACCGGCCCAAGAATGCTCTACAGAGTTTCTCTTGCAATGGCATTACAAATGTTGCAACAACTCACCGGTGCCAATTACTTTTTCTATTATGGTACTACTATCTTCGCTGGCGTCGGTATCAAAAACTCCTACGTTACTGCTATGATTCTTGGTGGTGTAAATGTTGGAGCTACTTTCTTTGGTGTCTATATGGCTCGTCATTTCCGTCGTCGCGAATCCTTATATATCGCTGCTCTATGGCAAACCATGTGTTTCCTCATCTTTGCATCTGTTGGACAATTCCTGTTCAAGGATGCTGCAGAAGGAAGTGCCACAGCTAAAACTGCTGGAAGTGTCATGATTGTCTTTGCTTGCCTCTTCATCGTTGGTTTTGCCAGTACATGGGGACCCCTTGTCTGGGCATGTATCGGTGAAATGTTTCCATACCGATACAGAGCTGTCGCAATGGCTTTCGCTACTTCGGCAAATTGGTTCTGGAACTTTATGCTTGCATTCTTCACCCCATTTATCACAAACGATATTCAATATGCATATGGATACGTCTTCGCTGGATGTAATCTTGCAGCTTTCTTCGTCGTTTTCTTCTTCCTGGTCGAATCTAGTGGAAGAACTCTAGAAGAAGTCGATGCCATGTATTTATTGGAAGTCAAGCCTATTGGAAGTCATGCATACGTCTTTGACGCTGCCACAATGGCAACTTTGGGTACGGATATTAATACCGACGCTATGAATCTGGAGACAAGAAATGGTAAGCTTCAAAAAGTCAATGAAGCTGGCCAAGGTGGAGTTTTGCATGATGAGGGAATTCCAGCTGGAAATCAGTCTCCCAAATATTAA > 174 blr3396 NA major_facilitator_superfamily_transporter NP_770036.1 11 MTMDARATAVPADQNLTRSEERQVVLASTLGTVFEWYDFFIYGSLAVFMSSVLFPPDNPTAAVLASLGALAAGFVIRPIGAVVFGRIGDLVGRKYTFLITIVMMGGGTALIGFLPTYASVGHAAWISLVMLRLIQGLAVGGEYGGAVIYVAEHSRPDRRGLLTGWIQITSSVGLALSIAVIIGTQSVMSEADFKAWGWRAPFIISIAMLAFSIYVRAKLHESPVFTRLKAERRLSRSPVRDTFARWSSLRLVLIGLFGVTAGMGSTYFTGQFYVMIFMQQIARIDLQTSYTLMAIGLVIGAPAFVFFGWLSDRVGRKWLMMTGLVLSALCYRPMFSSLLEAANPQLVAATRSAPVTVHADTTSEACRFGLAAALLSSHGDHGKPCVQAKKLLIGSGINFSYAAPVDGQAVAMTVNGKTIAGYDAAAYRKALSEAGYPAKADPAKVSSAYIVFLLVVMTVIVAMVYGPVASFLVEVFPANIRYTALSFPYHIGAGIFGGFLPFFATYLSLAVGDVFAGLWYPVVICTVVAVIGSIMLPNRPQIETDH alpha_subgroup Bradyrhizobium_japonicum_USDA_110 Bradyrhizobium_japonicum_USDA_110 NC_004463 3763081..3764721 Kaneko,T.,_Nakamura,Y.,_Sato,S.,_Minamisawa,K.,_Uchiumi,T.,_Sasamoto,S.,_Watanabe,A.,_Idesawa,K.,_Iriguchi,M.,_Kawashima,K.,_Kohara,M.,_Matsumoto,M.,_Shimpo,S.,_Tsuruoka,H.,_Wada,T.,_Yamada,M._and_Tabata,S. NA 0:1641 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_BA000040.COMPLETENESS:_full_length. NA 20-JAN-2012 Bradyrhizobium_japonicum_USDA_110_chromosome,_complete_genome. NA alpha-2_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bradyrhizobium_japonicum_Q89PT4_BRAJA.gb Bradyrhizobium_Jordan_1982 27375111 DNA_Res._9_(6),_225-256_(2002) NA NC_004463 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives 12597279 1641 NA genomic_DNA NA USDA_110 NA Rhizobium_japonicum_(Kirchner_1896)_Buchanan_1926_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 224911 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Bradyrhizobiaceae,_Bradyrhizobium Complete_genomic_sequence_of_nitrogen-fixing_symbiotic_bacterium_Bradyrhizobium_japonicum_USDA110_(supplement) NA NC_004463.1 ATGACGATGGATGCACGAGCGACGGCGGTACCCGCCGACCAGAATCTGACGCGCAGCGAGGAGCGGCAGGTCGTTCTCGCCTCGACCCTCGGCACCGTGTTCGAGTGGTACGACTTCTTCATCTACGGCTCGCTGGCCGTGTTCATGAGTTCGGTATTGTTTCCGCCGGACAACCCGACCGCCGCCGTGCTTGCGTCGCTCGGCGCTCTTGCGGCAGGCTTCGTGATCCGGCCGATCGGCGCAGTGGTCTTCGGCCGCATCGGCGATCTGGTCGGTCGAAAATATACCTTCCTCATCACCATCGTGATGATGGGCGGCGGCACGGCCTTGATCGGCTTCCTGCCCACCTATGCCAGCGTGGGTCATGCTGCATGGATCTCGCTGGTCATGCTGCGATTGATCCAGGGCCTCGCGGTCGGCGGCGAGTATGGCGGTGCCGTCATCTACGTTGCGGAGCATTCGCGTCCGGACCGGCGCGGGCTTCTGACCGGCTGGATCCAGATCACATCGTCGGTCGGGCTGGCGCTCTCCATCGCGGTCATCATCGGCACGCAGAGCGTCATGAGCGAGGCCGACTTCAAGGCCTGGGGATGGCGCGCTCCCTTCATCATCTCGATCGCGATGCTGGCGTTCTCGATCTACGTCCGCGCCAAGCTGCATGAATCGCCCGTCTTCACGCGTCTCAAGGCCGAGCGTCGCCTGTCCAGGAGCCCGGTCAGAGACACGTTCGCCCGGTGGTCCAGCCTTCGCCTGGTGTTGATCGGGCTGTTCGGTGTGACCGCGGGGATGGGGTCCACTTACTTCACCGGCCAGTTCTACGTGATGATCTTCATGCAGCAGATCGCAAGGATCGACCTGCAGACATCCTATACCCTGATGGCCATCGGCCTCGTCATCGGTGCGCCGGCTTTCGTTTTCTTCGGTTGGCTGTCCGATCGGGTCGGACGCAAATGGCTGATGATGACGGGTCTCGTACTTTCGGCGCTGTGCTACCGGCCGATGTTTTCGTCGCTGCTGGAGGCAGCAAATCCGCAGCTCGTGGCCGCGACCCGCAGTGCGCCGGTGACGGTGCACGCCGACACCACCAGCGAAGCATGCCGGTTCGGCCTTGCGGCCGCATTGCTGAGCTCGCATGGCGATCATGGCAAGCCTTGCGTCCAGGCCAAGAAGCTGTTGATCGGAAGCGGCATCAACTTCAGCTATGCCGCCCCGGTCGATGGCCAGGCCGTAGCCATGACGGTCAACGGCAAGACGATTGCCGGATACGATGCGGCGGCTTATCGCAAGGCCCTGTCCGAGGCGGGTTACCCCGCCAAGGCGGATCCCGCGAAGGTGTCGTCAGCCTACATCGTCTTTCTGCTGGTCGTCATGACCGTCATCGTCGCGATGGTCTATGGGCCGGTGGCGTCGTTCCTGGTCGAGGTGTTTCCGGCCAACATCCGATACACGGCACTTTCGTTTCCCTACCACATCGGCGCCGGCATCTTCGGTGGCTTCCTGCCGTTCTTTGCAACCTATCTTTCGCTCGCGGTCGGCGACGTGTTTGCGGGGCTCTGGTATCCGGTCGTCATTTGCACGGTCGTCGCCGTGATCGGATCGATCATGCTGCCGAACAGGCCGCAAATCGAGACGGATCACTGA > 175 bll0695 NA major_facilitator_superfamily_transporter NP_767335.1 11 MRSAHLGEDTMSVVGIDTGFELGAAPSVPDEISRRLEAMPGSPYVWRLVILLSLGGCFEIYDLFLTGYIAPGLSRSGLLSTTTQAFFGFAGIGAFVAATFAGLFVGTFFLGFLADRFGRRAIFTYALLGYTAASVIMACQTSPEGLLFWRFLAGIGIGVEVITIDAYITELVPSRMRGRAFAVNQSIMFVAVPVVAFLAWWLVPLAPYGVEGWRWVVLIGAAASMIIWVLRLFLPESPLWLARHGRNEEALRILTTLEAASGGAGSRPATSPARQAVRSTTNVSFADLFRPPYLSLVVLFMVFNLCQAFGFYGFANWVPTLLVEKGINVTKSLQYSFIVAFAYPIAPLLASSFADKFERRWIIAGACVAIIVFGMAFAQLTEPALLIVCGVLLTACNTTMSYAYHAYQTEVFPTQIRARASGLVYSMSRLSATFSGFIVAYMLKEGGVTGVFGLITAAMLIVVIAMALFGPNVRGKPLDAV alpha_subgroup Bradyrhizobium_japonicum_USDA_110 Bradyrhizobium_japonicum_USDA_110 NC_004463 741449..742894 Kaneko,T.,_Nakamura,Y.,_Sato,S.,_Minamisawa,K.,_Uchiumi,T.,_Sasamoto,S.,_Watanabe,A.,_Idesawa,K.,_Iriguchi,M.,_Kawashima,K.,_Kohara,M.,_Matsumoto,M.,_Shimpo,S.,_Tsuruoka,H.,_Wada,T.,_Yamada,M._and_Tabata,S. NA 0:1446 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_BA000040.COMPLETENESS:_full_length. NA 20-JAN-2012 Bradyrhizobium_japonicum_USDA_110_chromosome,_complete_genome. NA alpha-2_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bradyrhizobium_japonicum_Q89WJ2_BRAJA.gb Bradyrhizobium_Jordan_1982 27375111 DNA_Res._9_(6),_225-256_(2002) NA NC_004463 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives 12597279 1446 NA genomic_DNA NA USDA_110 NA Rhizobium_japonicum_(Kirchner_1896)_Buchanan_1926_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 224911 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Bradyrhizobiaceae,_Bradyrhizobium Complete_genomic_sequence_of_nitrogen-fixing_symbiotic_bacterium_Bradyrhizobium_japonicum_USDA110_(supplement) NA NC_004463.1 CTACACCGCGTCCAGCGGTTTGCCGCGCACGTTCGGACCGAACAGCGCCATCGCGATCACCACGATCAGCATGGCCGCGGTGATCAGGCCGAACACGCCGGTGACGCCGCCCTCCTTCAGCATGTAGGCGACGATGAAGCCCGAGAACGTCGCGCTTAGCCGGCTCATCGAATAGACGAGGCCGGATGCACGTGCCCGGATCTGGGTCGGAAACACCTCGGTCTGATAGGCGTGATAGGCGTAGGACATCGTGGTGTTGCAGGCCGTCAGCAGCACGCCGCAGACGATCAGCAGCGCCGGCTCGGTCAGTTGCGCGAACGCCATGCCGAAGACGATGATGGCGACGCAGGCGCCGGCGATGATCCAGCGCCGCTCGAATTTGTCGGCGAAGCTCGAAGCGAGCAGCGGCGCGATCGGATAGGCGAAGGCGACGATGAAGGAATATTGCAGGCTCTTGGTGACGTTGATGCCCTTCTCGACCAGCAGCGTCGGCACCCAATTGGCGAAGCCGTAGAAGCCGAAGGCCTGGCAGAGGTTGAACACCATGAACAGGACCACGAGCGAGAGATAGGGCGGGCGGAACAGGTCGGCGAAGCTGACATTCGTGGTCGATCGCACCGCCTGGCGCGCAGGCGACGTCGCGGGCCGCGACCCGGCGCCGCCGCTGGCGGCCTCCAGCGTCGTTAGGATGCGAAGCGCCTCCTCGTTGCGGCCGTGCCGCGCCAGCCAGAGCGGGCTTTCGGGCAGGAACAGCCTGAGCACCCAGATGATCATGCTGGCGGCGGCGCCGATCAGCACCACCCAGCGCCAGCCCTCGACACCGTAAGGCGCGAGCGGCACCAGCCACCAGGCGAGGAATGCGACGACGGGGACGGCGACGAACATGATCGACTGGTTCACCGCAAAGGCGCGCCCGCGCATCCGGCTTGGCACGAGCTCAGTGATGTAGGCGTCGATGGTGATGACCTCGACGCCGATGCCGATGCCGGCGAGGAAACGCCAGAACAGCAGACCTTCCGGAGAGGTCTGGCAGGCCATGATCACGGAGGCCGCGGTGTAGCCGAGCAGCGCATAGGTGAAGATCGCGCGCCGGCCGAAGCGGTCGGCGAGGAAGCCGAGGAAGAAGGTGCCGACGAACAGGCCGGCAAAGGTCGCGGCGACGAAGGCGCCGATGCCGGCGAAGCCGAAGAACGCCTGCGTCGTCGTGCTCAAAAGTCCGCTGCGGCTCAGGCCCGGCGCGATATAGCCGGTGAGGAACAGATCGTAGATCTCGAAGCAGCCGCCGAGCGAGAGCAGGATGACGAGGCGCCAGACATAGGGCGACCCCGGCATCGCCTCGAGCCGCCGCGAGATCTCGTCCGGCACGGACGGCGCAGCGCCGAGCTCGAAGCCTGTGTCGATGCCGACAACGCTCATGGTGTCCTCCCCGAGGTGCGCGGATCGCAC > 176 BRADO4212 Evidence_3_:_Function_proposed_based_on_presence_of_conserved_amino_acid_motif,_structural_feature_or_limited_homology;_Product_type_pt_:_transporter major_facilitator_superfamily_citrate_transporter_permease YP_001206189.1 11 MQPSPTDAMRRRVVISSTIGNALEWFDFTVFGLFAATISKLFFPADDPLASLLSTFAVFGLAFVARPLGGLVFGLYADRYGRKAALVVMITMMAIGTGLIGVLPTFASIGIAAPLLLLLARLIQGFSAGGEFGSASAMLIEFAPPGRKGFYGAFQTVSQALAFALGAMMAVTLSKTLSPADFASWGWRVPFILGILIGPVGWYLRRRCDESPEFRTHMAERAARATPARKTPLGQLFAEHPRELMASFGLIAAGTAIYYVGGVFLPAYAASELKLPLADAQLGLLAVSLSNIPLGLASGMLSDRIGRRGVILPALLLYPILYVVLFRQLVAEPTTAHLWQLQSVGLILGVLGGAVPAFMTEIFPVGVRATGASLMYNLGVMLFGGLAPFINTWMVQATGDKSAPVYYILAAAAVGLLGMVVYRRRT alpha_subgroup Bradyrhizobium_sp._ORS_278 Bradyrhizobium_sp._ORS_278 NC_009445 4413710..4414990 Giraud,E.,_Moulin,L.,_Vallenet,D.,_Barbe,V.,_Cytryn,E.,_Avarre,J.C.,_Jaubert,M.,_Simon,D.,_Cartieaux,F.,_Prin,Y.,_Bena,G.,_Hannibal,L.,_Fardoux,J.,_Kojadinovic,M.,_Vuillet,L.,_Lajus,A.,_Cruveiller,S.,_Rouy,Z.,_Mangenot,S.,_Segurens,B.,_Dossat,C.,_Franck,W.L.,_Chang,W.S.,_Saunders,E.,_Bruce,D.,_Richardson,P.,_Normand,P.,_Dreyfus,B.,_Pignol,D.,_Stacey,G.,_Emerich,D.,_Vermeglio,A.,_Medigue,C._and_Sadowsky,M. NA 0:1281 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU234118.Annotation_data_relative_to_BLAST_similarities,_COG_assignations,enzymatic_function_prediction_(PRIAM_software),_TMHMM_and_SignalPpredictions,_and_synteny_results_(Syntonizer_software)_areavailable_in_FrankiaScope_database_via_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage/frankia.Each_annotation_includes_a_confidence_level_as_follow:_1_:_Functionexperimentally_demonstrated_in_the_studied_organism_2a_:_Functionof_homologous_gene_experimentally_demonstrated_in_an_other_organism2b_:_Function_of_strongly_homologous_gene3_:_Function_proposed_based_on_presence_of_conserved_amino_acidmotif,_structural_feature_or_limited_homology4_:_Homologs_of_previously_reported_genes_of_unknown_function_5_:No_homology_to_any_previously_reported_sequences_6_:_Doubtful_CDS7_:_Gene_remnant.COMPLETENESS:_full_length. NA 19-JAN-2012 Bradyrhizobium_sp._ORS_278_chromosome,_complete_genome. NA alpha-2_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bradyrhizobium_sp_A4YVN8_BRASO.gb Bradyrhizobium_Jordan_1982 146337175 Science_316_(5829),_1307-1312_(2007) NA NC_009445 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives 17540897 1281 NA genomic_DNA NA ORS278 NA Bradyrhizobium_sp._ORS278 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 114615 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Bradyrhizobiaceae,_Bradyrhizobium Legumes_symbioses:_absence_of_Nod_genes_in_photosynthetic_bradyrhizobia NA NC_009445.1 ATGCAGCCGTCACCAACCGATGCGATGCGTCGCCGTGTCGTGATCTCCTCGACCATCGGCAATGCGCTCGAATGGTTCGACTTCACCGTCTTCGGGCTGTTCGCCGCGACCATCAGCAAGCTGTTCTTTCCCGCCGACGATCCGCTGGCATCGCTGCTCTCGACATTTGCGGTATTTGGCCTCGCCTTCGTCGCGCGCCCGCTCGGCGGACTGGTGTTCGGCCTCTACGCCGACCGCTACGGGCGCAAGGCGGCGCTGGTCGTGATGATCACGATGATGGCGATCGGCACCGGCCTGATCGGCGTGCTGCCGACCTTCGCATCGATCGGCATTGCCGCGCCGCTCTTGCTGCTGCTCGCGCGTCTGATCCAGGGGTTCTCGGCCGGCGGCGAGTTCGGCTCGGCGAGCGCCATGCTGATCGAGTTCGCTCCGCCAGGGCGCAAGGGGTTCTATGGCGCTTTCCAGACCGTGTCGCAGGCGCTCGCCTTCGCGCTCGGCGCAATGATGGCGGTCACGCTCAGCAAGACGCTGTCGCCCGCGGATTTCGCCAGCTGGGGCTGGCGGGTGCCGTTCATCCTGGGAATCCTGATCGGGCCCGTCGGCTGGTATCTGCGCCGCCGATGCGATGAATCGCCTGAATTCCGGACCCATATGGCGGAACGTGCAGCAAGAGCCACGCCTGCAAGAAAGACCCCGCTCGGGCAGCTGTTCGCGGAGCATCCGCGCGAGCTCATGGCCTCGTTCGGCCTGATCGCGGCCGGCACCGCGATCTACTATGTCGGCGGTGTGTTCCTGCCGGCCTACGCCGCGAGCGAGCTCAAGCTGCCGCTGGCCGACGCGCAGCTCGGGCTGCTCGCGGTCAGCCTCAGCAACATTCCGCTGGGTCTCGCGTCGGGCATGCTCTCTGATCGCATCGGGCGGCGTGGCGTCATCTTGCCGGCGCTGCTGCTCTATCCCATCCTCTACGTGGTGTTGTTCAGGCAGCTGGTGGCGGAGCCGACCACCGCGCATCTGTGGCAGCTCCAGTCCGTCGGCCTGATCCTCGGCGTGCTCGGCGGCGCGGTGCCGGCGTTCATGACCGAGATCTTTCCTGTCGGCGTGCGCGCGACCGGGGCGTCGCTGATGTACAATCTCGGCGTGATGCTGTTCGGTGGCCTGGCGCCGTTCATCAATACCTGGATGGTTCAAGCCACCGGCGACAAGTCCGCGCCGGTCTACTACATTCTCGCCGCCGCCGCGGTCGGCCTGCTCGGGATGGTCGTGTACCGCAGGAGAACATAA > 177 NA orf49kD;_probable_citrate_transporter transmembrane_proton_symport_protein AAK00168.1 11 MSPASIGHGSNAKSRIGAILRATSGNFLEQFDFFLFGFYASAIGNAFFPSGSETASLLNTFGVFWLGALMRPVGAIVLGAYIDQIGRRQGLIITLSIMAIGTIIIAFCPGYATIGIAAPVIVLFGRLLQGFSAGVEVGGVSVYLSEIATPGNRGFYTSFQSSSQQVAIFVAALIGYFLSEALPAEMVAAWGWRIPFFLGCLIVPLIFFLRRTLEETPEFLVMKNHPTAREVFASTVANWRIVILGMMIAMLTTTTFYFVTVYTPTFGKHVLQLSSQNTLLVTLLVAVTNFIWNPIGGAISDKIGRKPVLLTIAGLALVTVYPALSWLVTDPSFGKMLAVEMMFSFYFGTYSGAMLGALVEIVPKHVRTTCFSLAFALAAALFGTFTPLASTWLIERTNDKASPGFWLMFAALLGIIAVLTIYPGNTKRVAKPSRLERSNRALTAQFLTY alpha_subgroup Bradyrhizobium_sp._WM9 Bradyrhizobium_sp._WM9 AF222753 26244..27593 Stepkowski,T.,_Swiderska,A.,_Miedzinska,K.,_Czaplinska,M.,_Biesiadka,J.,_Swiderski,M._and_Legocki,A. NA 0:1350 NA NA 01-FEB-2001 Bradyrhizobium_sp._WM9_nodulation_region_1. NA alpha-2_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Bradyrhizobium_sp_Q9AQ12_BRASW.gb Bradyrhizobium_Jordan_1982 12642165 Unpublished NA AF222753 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1350 NA genomic_DNA 133505 WM9 NA Bradyrhizobium_sp._WM9 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 133505 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Bradyrhizobiaceae,_Bradyrhizobium Molecular_characterization_of_nodulation_functions,_SSU_rRNA_and_dnaK_genes_in_the_lupin_Bradyrhizobium_reveals_distinct_phylogenetic_pathways_of_the_symbiotic_and_housekeeping_loci_in_the_Bradyrhizobium_genus NA AF222753.1 CTAATACGTGAGAAATTGCGCGGTTAGGGCCCTGTTAGACCGCTCGAGTCGCGACGGCTTCGCAACTCTCTTGGTGTTTCCTGGATAGATCGTCAGTACGGCGATGATGCCGAGCAAAGCTGCAAACATCAACCAGAAACCGGGGGACGCCTTATCATTGGTCCGTTCGATCAGCCAAGTTGATGCGAGCGGCGTAAACGTGCCAAAGAGAGCTGCTGCGAGTGCGAAGGCTAAAGAAAAGCAAGTTGTGCGAACGTGCTTCGGCACGATTTCGACCAGAGCGCCCAACATGGCGCCGCTATAGGTGCCAAAGTAGAACGAGAACATCATCTCCACTGCCAGCATCTTGCCAAAGCTTGGGTCGGTCACAAGCCAAGACAACGCCGGATATACGGTCACCAAGGCGAGCCCGGCAATCGTCAGCAAGACCGGCTTACGGCCGATTTTGTCTGAAATCGCGCCGCCAATTGGGTTCCAGATGAAGTTCGTTACGGCGACCAGAAGCGTCACCAAGAGCGTGTTCTGCGAGGACAGCTGCAATACGTGCTTGCCAAACGTAGGCGTGTACACCGTGACGAAATAGAAGGTCGTGGTCGTCAGCATCGCGATCATCATGCCGAGAATGACAATGCGCCAGTTCGCAACTGTGGAGGCGAAGACCTCGCGGGCCGTTGGGTGGTTCTTCATGACCAGAAACTCCGGAGTTTCCTCCAGCGTCCGGCGCAGGAAGAAGATAAGCGGAACGATCAAGCAGCCAAGGAAGAACGGGATCCGCCAGCCCCAGGCGGCAACCATTTCGGCCGGAAGTGCTTCGCTCAAAAAATATCCGATAAGAGCCGCGACAAAGATCGCAACCTGCTGGCTCGAGGACTGAAACGATGTGTAAAAACCGCGGTTGCCCGGAGTGGCAATCTCGGAGAGGTAGACGGAAACGCCGCCAACCTCAACGCCGGCAGAAAAGCCCTGCAACAGCCGTCCGAACAGCACGATCACGGGTGCGGCAATGCCGATCGTCGCATAGCCGGGACAAAAGGCGATGATGATGGTGCCAATGGCCATTATCGAAAGCGTGATGATCAAGCCTTGCCGACGGCCAATCTGGTCAATATAGGCTCCAAGCACGATCGCGCCAACAGGTCGCATCAAGGCACCGAGCCAGAACACACCGAACGTGTTAAGCAGTGAAGCCGTTTCACTTCCTGATGGAAAGAACGCATTTCCGATGGCACTGGCGTAGAACCCGAACAAGAAGAAGTCGAACTGCTCGAGGAAGTTGCCGCTCGTCGCACGTAAGATGGCGCCAATGCGGGATTTGGCATTTGACCCGTGCCCAATGGACGCTGGTGACAT > 178 BBAL3_1300 GEPR_COG0477_Permeases_of_the_major_facilitator_superfamily transporter,_major_facilitator_family EDX80143.1 11 MTARDGQSIGFAPKQDFTVSDAKNVSPTARKGRVLFASLIGTTIEFYDFYIYATAAVLVFPRLFFPGADPTTAMLSSFATFSIAFFARPVGALAFGHFGDRVGRKATLVAALMTMGVSTVAIGLLPTHASVGIIAPLLLALCRFGQGLGLGGEWGGAVLLATENAPPGKKAWFGMFPQLGAPIGFILSTASFIVLTSTMNEAQFEAWGWRLPFLASALLVFVGLWVRLKITETPEFQKAVDRNERVKAPAVTLFAHHKMALFLGTFSGVTTFSLFYLMTVFALGWATTGMGYERADILPIQLIGVLFFAAFIPVTALLADRYGQVKVLIASSVGIGLFGALFAPLFGAGLTGLLIFFALGFGLMGCTYGPIGAAMARPFPTTVRYTGASMAFNLAGIVGASLAPYLATWLAQNYGLAAVGGYLALSAVVTILALWGMGRVSPETEL alpha_subgroup Brevundimonas_sp._BAL3 Brevundimonas_sp._BAL3 DS989898 2028792..2030132 Hagstrom,A.,_Ferriera,S.,_Johnson,J.,_Kravitz,S.,_Beeson,K.,_Sutton,G.,_Rogers,Y.-H.,_Friedman,R.,_Frazier,M._and_Venter,J.C. NA 0:1341 With_funding_from_the_Gordon_and_Betty_Moore_Foundation(www.moore.org),_the_J._Craig_Venter_Institute_(www.jcvi.org)_issequencing,_assembling,_and_auto-annotating_the_genomes_ofapproximately_165_marine_microbes._These_microbes_were_contributedby_collaborators_worldwide,_and_embody_an_array_of_physiologicaldiversity,_including_carbon_fixers,_photoautotrophs,photoheterotrophs,_nitrifiers,_and_methanotrophs._This_work_wasdesigned_to_complement_other_ongoing_research_at_JCVI_andelsewhere_to_characterize_the_microbial_biodiversity_of_marine_andterrestrial_environments_through_metagenomics_profiling_ofenvironmental_samples.Please_be_aware_that_the_annotation_is_done_automatically_withlittle_or_no_manual_curation. NA 15-AUG-2008 Brevundimonas_sp._BAL3_scf_1104670153119_genomic_scaffold,_whole_genome_shotgun_sequence. NA Caulobacteraceae_Henrici_and_Johnson_1935 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brevundimonas_sp_B4W7H1_9CAUL.gb Brevundimonas_Segers_et_al._1994_emend._Abraham_et_al._1999 196183874 Submitted_(07-JUL-2008)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA DS989898 NA NA Caulobacterales_Henrici_and_Johnson_1935 purple_photosynthetic_bacteria_and_relatives NA 1341 NA genomic_DNA NA BAL3 NA Brevundimonas_sp._BAL3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 391600 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Caulobacterales,_Caulobacteraceae,_Brevundimonas Direct_Submission NA DS989898.1 TTAAAGCTCGGTCTCCGGGCTGACCCGTCCCATGCCCCACAGGGCCAGGATGGTCACCACCGCCGACAGGGCCAGATAACCGCCGACCGCCGCCAGCCCATAGTTCTGCGCCAGCCAGGTCGCCAGATAGGGCGCCAGCGACGCCCCGACGATGCCCGCCAGATTGAAGGCCATGGACGCCCCCGTATAGCGGACCGTCGTCGGGAAGGGCCGCGCCATGGCCGCGCCGATGGGGCCATAGGTGCAGCCCATCAGCCCGAACCCCAGGGCGAAGAAGATCAGCAGTCCGGTCAGACCGGCGCCGAACAGGGGCGCGAACAGGGCGCCGAACAGGCCGATGCCCACCGACGACGCGATCAACACCTTCACCTGCCCATACCTGTCCGCCAGCAGGGCCGTCACCGGAATGAAGGCGGCGAAGAACAGCACCCCGATCAACTGGATCGGCAGGATGTCCGCCCGCTCATATCCCATGCCCGTCGTGGCCCAACCCAGGGCGAAGACGGTCATCAGATAGAACAGCGAGAAGGTCGTCACCCCGCTGAACGTCCCCAGGAACAGCGCCATCTTGTGATGAGCAAACAGGGTGACGGCCGGCGCCTTGACCCGCTCGTTGCGGTCCACCGCCTTCTGGAACTCGGGGGTCTCGGTGATCTTCAACCGCACCCACAGACCGACGAACACCAAAAGGGCGCTGGCCAGGAAGGGAAGACGCCACCCCCAGGCCTCGAATTGAGCCTCGTTCATCGTCGAGGTCAGCACGATGAAGGAGGCGGTCGATAGAATGAAGCCGATCGGCGCGCCAAGCTGCGGGAACATGCCGAACCAGGCCTTCTTGCCGGGCGGGGCGTTCTCGGTGGCCAGCAGCACGGCGCCGCCCCATTCTCCGCCCAGGCCCAGCCCCTGTCCGAACCGGCACAGGGCCAGCAACAGGGGCGCGATGATCCCGACCGAGGCATGGGTCGGCAGCAGGCCGATGGCCACGGTCGACACGCCCATGGTCATCAGGGCCGCCACCAGCGTCGCCTTGCGCCCGACCCGGTCCCCGAAATGCCCGAAGGCCAGGGCGCCGACCGGCCGCGCGAAGAAGGCGATGGAGAAGGTGGCGAAGGACGACAGCATGGCCGTCGTCGGATCGGCGCCGGGGAAGAACAGGCGCGGAAACACCAACACCGCCGCCGTGGCGTAGATGTAGAAGTCGTAGAATTCGATCGTGGTGCCGATCAGGCTGGCGAAAAGAACCCGCCCCTTCCGGGCGGTCGGCGAAACATTCTTTGCGTCAGACACGGTGAAATCCTGCTTGGGAGCAAAGCCAATGCTTTGCCCGTCCCGCGCGGTCAA > 179 BAAG_00553 NA major_facilitator_transporter EEX63630.1 11 MNITIEETLDQAGTGSFQRGLLGIFGLVWAADAMQVLAVGFTGAAIAKTFGLTVPQALQTGTLFFLGMLVGAALFGRLADKYGRRRILLITVACDALFGLLSAFAPDFGSLLALRFLTGLAVGGTLPVDYAMMAEFLPAKNRGRWLVMLEGFWAVGTVVIAIAAWATSVAGVEDAWRYIFIVTAAPALIGIWLRFRVPESPMHLLKSGRVEEAKAVINLVLSRNGKPELPPGAKLLAPRLVTNERLLSPNLRQRTLTSLAIWFLVSVSYYGIFTWIPAKLASDGFGFVRGYGFLVVVALAQLPGYALAAYGVEAWGRRKTLIGFLFVSAAACALFTVATSSSVVGASILIMSFALLGTWGALYAFTPELYPTALRASGMGAAGAMARLGGLLAPSAMAVVINQSFYTAVAMFAGLLALAGIIAFFINVETRQQALN alpha_subgroup Brucella_abortus_bv._6_str._870 Brucella_abortus_bv._6_str._870 DS999869 581523..582833 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Whatmore,A.M.,_Perrett,L.L.,_OCallaghan,D.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1311 Genome_Coverage:_40.74xSequencing_Technology:_454Annotation_was_added_to_the_scaffolds_in_October_2009. NA 07-OCT-2009 Brucella_abortus_bv._6_str._870_supercont1.12_genomic_scaffold,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_abortus_C9U9Z3_BRUAB.gb Brucella_Meyer_and_Shaw_1920 222160336 Unpublished NA DS999869 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1311 NA genomic_DNA NA 870 NA Brucella_melitensis_bv._Abortus NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 520454 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella The_Genome_Sequence_of_Brucella_abortus_bv._6_str._870 NA DS999869.1 CTAGTTCAGCGCCTGCTGGCGTGTTTCAACATTAATGAAGAATGCGATGATACCCGCCAGCGCCAACAGCCCTGCGAACATTGCCACCGCCGTATAGAAACTCTGGTTGATAACCACAGCCATGGCCGATGGCGCCAGAAGCCCGCCAAGGCGCGCCATCGCCCCTGCCGCCCCCATACCGCTTGCTCTTAGCGCCGTCGGATAAAGCTCTGGTGTAAAAGCATAAAGTGCGCCCCAGGTGCCGAGCAAAGCAAAGCTCATGATGAGGATGGAAGCGCCAACGACAGATGAACTTGTCGCCACCGTGAAAAGCGCGCAGGCGGCGGCGCTGACGAACAGGAACCCGATCAGCGTCTTGCGACGCCCCCATGCCTCGACGCCATAGGCGGCAAGCGCATAGCCCGGCAATTGCGCCAGTGCCACAACAACCAGAAACCCATAGCCCCGCACAAATCCGAACCCGTCGCTCGCAAGCTTTGCCGGAATCCACGTGAAAATGCCGTAATAGGAAACCGAAACCAGAAACCAGATCGCCAGGCTCGTCAATGTGCGCTGGCGCAGATTGGGTGAAAGCAGCCGCTCATTCGTCACCAGACGCGGCGCCAACAGTTTCGCGCCGGGGGGCAATTCCGGCTTGCCATTGCGGCTCAGCACCAGGTTAATAACGGCTTTTGCTTCTTCGACGCGCCCGGATTTAAGCAGATGCATCGGTGATTCCGGCACGCGGAAACGCAGCCATATGCCGATCAGGGCGGGGGCAGCGGTTACGATGAAAATATAGCGCCAGGCGTCCTCGACTCCAGCCACGCTCGTCGCCCAGGCTGCAATTGCGATCACGACCGTGCCAACTGCCCAGAACCCTTCCAGCATGACCAGCCAGCGCCCGCGATTTTTCGCCGGAAGAAACTCCGCCATCATGGCATAATCGACCGGCAAAGTACCGCCGACTGCCAAGCCGGTCAGGAAACGAAGGGCAAGCAAGGAGCCAAAATCCGGGGCGAAAGCCGAAAGCAACCCGAACAGCGCATCGCAGGCCACAGTGATGAGCAATATGCGACGGCGGCCATATTTATCGGCAAGACGGCCGAAAAGTGCAGCACCAACCAACATGCCGAGGAAGAACAGCGTTCCCGTCTGCAAGGCCTGCGGGACGGTCAGGCCGAAAGTTTTCGCAATTGCGGCACCCGTAAAGCCTACGGCCAGCACCTGCATGGCATCTGCTGCCCAGACGAGGCCAAAAATCCCAAGAAGGCCGCGCTGAAATGAGCCCGTCCCCGCCTGGTCGAGCGTTTCTTCGATCGTAATGTTCAT > 180 BADG_02311 NA major_facilitator_transporter EEX60273.1 11 MAVSSSAAAGAQKMTGEERKVIFASSLGTVFEWYDFYLYGTLASFIGAAFFNEYPEATRNIFVLLAFAAGFLVRPFGALVFGRIGDLVGRKYTFLVTIVIMGGSTFLVGLLPGSASLGIFAPIILIALRMLQGLALGGEYGGAATYVAEHAPNNRRGFFTSWIQTTATLGLFLSLLVILGAQTLLSKDAFAAWGWRIPFLVSVLLLGISVWIRMQMSESPAFKRMKEEGKTSKAPLSEAFGQWKNAKIALIALFGLTAGQAVVWYCGQFYALFFLQNVLKVENQSANIMVAIALLIGTGFFVIFGWLSDKIGRKPIIMAGLILAAVTYFPLFKALTNAANPALAQAEQTVKATVTAAPGDCNFQFNATGTSKFTTSCDVATSFLAKSSVPYETVQTAAPGTPATITIGDTTIQSYDAVQAGADAAAKQAALAHGVNLALQQAGFPLVRDTAKVPDSKLDAFVAANPELQLNADAIRAGDAKTMVSAADLVKQKLLTQSEAESLGVSSEQAVYSIPNAGAFKMVADPAQVNWVLTIAILTILVIYVTMVYGPIAAILVEMFPTRIRYNGMSLPYHIGNGWFGGLLPAGVFALSAAKGDIYYGLWYPIIIASVTFVIGMLFVKETKGVDLNKVD alpha_subgroup Brucella_abortus_bv._2_str._86/8/59 Brucella_abortus_bv._2_str._86/8/59 DS999911 441637..443535 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Whatmore,A.M.,_Perrett,L.L.,_OCallaghan,D.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1899 Genome_Coverage:_42.43xSequencing_Technology:_454Annotation_was_added_to_the_scaffolds_in_October_2009. NA 07-OCT-2009 Brucella_abortus_bv._2_str._86/8/59_supercont1.16_genomic_scaffold,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_abortus_C9V1K6_BRUAB.gb Brucella_Meyer_and_Shaw_1920 222160378 Unpublished NA DS999911 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1899 NA genomic_DNA NA 86/8/59 NA Brucella_melitensis_bv._Abortus NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 520450 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella The_Genome_Sequence_of_Brucella_abortus_bv._2_str._86/8/59 NA DS999911.1 TCAATCGACCTTGTTGAGATCGACTCCCTTGGTTTCCTTCACGAACAGCATGCCGATCACGAAGGTTACGGATGCGATGATGATCGGGTACCAGAGACCGTAATAGATGTCGCCCTTGGCCGCGCTGAGCGCGAACACGCCAGCGGGAAGCAGGCCGCCGAACCAGCCGTTGCCGATATGATAAGGTAGCGACATGCCGTTATAGCGGATGCGGGTTGGGAACATCTCGACGAGGATTGCTGCAATCGGGCCATATACCATCGTCACGTAGATGACGAGGATAGTCAGGATCGCGATGGTCAGCACCCAGTTCACCTGTGCAGGATCAGCAACCATCTTGAATGCGCCCGCATTCGGGATGGAATAAACGGCCTGTTCGGAACTGACGCCAAGGCTTTCAGCTTCGCTCTGGGTAAGAAGCTTCTGCTTCACGAGGTCAGCAGCGGAAACCATCGTCTTGGCGTCGCCAGCGCGAATGGCATCTGCATTGAGTTGCAATTCCGGGTTGGCGGCGACGAAGGCGTCGAGCTTGCTATCCGGCACTTTCGCTGTATCGCGAACGAGCGGGAAACCAGCCTGCTGCAAGGCAAGGTTCACGCCATGGGCAAGTGCTGCCTGCTTGGCTGCGGCATCCGCACCGGCCTGAACCGCGTCATAAGACTGGATCGTGGTATCGCCGATGGTGATGGTCGCAGGTGTTCCGGGCGCCGCCGTCTGCACGGTTTCGTAAGGCACCGAACTCTTGGCGAGGAAGCTTGTTGCAACATCGCAGGAGGTGGTGAACTTGGACGTGCCGGTGGCGTTGAACTGGAAGTTACAGTCGCCGGGTGCTGCCGTAACCGTTGCCTTCACGGTCTGTTCGGCCTGCGCCAGCGCCGGGTTGGCGGCATTGGTCAGCGCCTTGAACAGCGGGAAGTAGGTGACGGCGGCGAGGATGAGACCAGCCATGATGATCGGCTTGCGGCCGATCTTGTCCGAAAGCCAGCCAAAAATCACGAAGAAGCCGGTGCCGATCAGGAGGGCAATTGCCACCATGATGTTGGCCGACTGGTTTTCCACCTTCAACACGTTCTGAAGGAAGAAGAGGGCGTAAAACTGTCCGCAATACCAGACAACGGCCTGACCGGCGGTGAGGCCGAAAAGGGCGATGAGGGCGATCTTGGCATTCTTCCACTGGCCGAAAGCTTCCGAAAGCGGGGCCTTGGAGGTTTTGCCTTCTTCCTTCATGCGCTTGAACGCGGGCGATTCGCTCATCTGCATGCGGATCCAGACGGAAATACCGAGCAGGAGAACCGATACGAGGAACGGAATACGCCAGCCCCAGGCCGCGAAGGCGTCCTTGCTGAGCAAGGTCTGGGCGCCCAGGATCACGAGCAGCGACAGGAACAGGCCGAGCGTTGCCGTGGTCTGGATCCATGAAGTGAAGAAGCCGCGACGGTTGTTCGGCGCATGTTCGGCCACATAGGTTGCCGCGCCGCCATATTCGCCGCCGAGCGCCAGCCCCTGCAACATGCGCAGCGCAATCAGGATGATCGGTGCGAAGATGCCGAGCGAGGCGGAGCCGGGCAGAAGGCCGACCAGGAAGGTCGATCCGCCCATGATGACGATGGTAACAAGGAATGTATATTTACGGCCGACGAGGTCGCCGATGCGTCCGAAGACGAGAGCGCCGAAGGGGCGCACAAGGAAACCTGCCGCAAAAGCCAGAAGAACGAAGATGTTTCGGGTTGCTTCCGGGTATTCGTTGAAGAAGGCCGCGCCGATAAAGGACGCCAGCGTTCCATAGAGATAGAAGTCATACCATTCAAAGACGGTACCGAGCGAGGACGCAAAGATGACCTTGCGCTCTTCGCCCGTCATTTTTTGTGCGCCGGCCGCGGCGCTTGACGAGACTGCCAT > 181 BARG_00384 NA major_facilitator_transporter EEX78954.1 11 MTVAEAVAPQANSVRRVLTASMIGTTIEFFDFYIYATAAVIVFPYLFFPASDGNSALLQSFATFAIAFFARPVGAAIFGHFGDKIGRKATLVAALMTMGLSTVAIGFLPTYASIGVAAPLLLALCRLGQGLGLGGEWGGAVLLATENAPEGKRTWYGMFPQLGAPAGFILATGIFLLLAETMTEEQFFAYGWRVPFIASAILVAVGLFIRLRIAETPEFQKAIDKAERVAVPAAQLFRHHKMNLFLGTIGTMATFVLFYLMTVFSLGWGTRALGYSREEFLVLQMIGVIFFGLTIPLSALLSDRYGMRTIMVIVTVLIGLYGFIMAPLFAAGTAGVLGFLIIGFGLMGMTYGPIGAVLAEPFPTSVRYTGASLAFNLAGILGASLAPYIATWLATDYGFAYVGYYMVAAAIISLIGFVFITLKDKK alpha_subgroup Brucella_abortus_bv._9_str._C68 Brucella_abortus_bv._9_str._C68 EQ999630 409525..410805 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Whatmore,A.M.,_Perrett,L.L.,_OCallaghan,D.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1281 Genome_Coverage:_40.71xSequencing_Technology:_454Annotation_was_added_to_the_scaffolds_in_October_2009. NA 08-OCT-2009 Brucella_abortus_bv._9_str._C68_genomic_scaffold_supercont1.1,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_abortus_C9VPD9_BRUAB.gb Brucella_Meyer_and_Shaw_1920 224020394 Unpublished NA EQ999630 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1281 NA genomic_DNA NA C68 NA Brucella_melitensis_bv._Abortus NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 520455 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella The_Genome_Sequence_of_Brucella_abortus_bv._9_str._C68 NA EQ999630.1 CTATTTCTTGTCTTTCAGCGTTATGAAGACAAAGCCGATCAGCGAAATGATTGCCGCTGCCACCATGTAATAGCCGACATAGGCAAAGCCGTAATCGGTGGCGAGCCAGGTGGCGATATAGGGGGCAAGCGACGCGCCCAGAATACCGGCCAGATTGAAGGCCAGCGACGCGCCCGTATAGCGCACCGAAGTCGGGAAGGGTTCGGCAAGAACCGCGCCGATGGGGCCATAGGTCATGCCCATCAGCCCAAAGCCGATGATGAGAAAGCCCAACACGCCTGCGGTGCCCGCCGCAAAGAGCGGCGCCATGATGAAGCCGTAGAGGCCGATCAGCACGGTGACGATGACCATGATGGTGCGCATGCCGTAGCGGTCGGAGAGCAGGGCGGAAAGCGGAATGGTGAGGCCGAAGAAGATGACGCCGATCATCTGAAGCACGAGGAATTCCTCGCGGCTGTAGCCCAGTGCGCGCGTGCCCCAGCCGAGCGAAAACACGGTCATGAGATAGAAGAGCACGAAGGTTGCCATGGTGCCGATGGTGCCAAGGAACAGGTTCATCTTGTGATGCCTGAAAAGCTGTGCGGCTGGCACGGCGACCCTTTCAGCCTTGTCGATGGCTTTCTGGAACTCCGGTGTTTCGGCAATCCGCAGGCGGATGAAAAGGCCCACGGCCACCAGAATTGCACTGGCGATGAAGGGAACACGCCAGCCATAGGCAAAGAACTGTTCTTCGGTCATGGTTTCGGCGAGCAGCAGGAAAATGCCCGTGGCCAGAATGAAGCCTGCCGGTGCGCCAAGCTGCGGGAACATGCCATACCAGGTCCGCTTGCCTTCCGGTGCGTTTTCGGTGGCGAGCAGCACTGCACCGCCCCATTCGCCGCCAAGACCCAGCCCCTGACCCAGACGGCAGAGCGCCAGCAGAAGCGGAGCCGCAACGCCGATGGAGGCATAAGTTGGCAGGAAGCCGATGGCAACTGTGGAAAGACCCATGGTCATCAGTGCCGCGACGAGCGTGGCCTTGCGGCCGATCTTGTCACCGAAATGGCCGAAAATCGCAGCGCCGACAGGGCGGGCGAAAAAGGCGATGGCGAAAGTGGCAAAGGATTGCAACAGTGCGGAATTGCCGTCGCTTGCCGGGAAAAACAGGTACGGAAATACGATCACCGCAGCCGTTGCATAAATATAGAAATCGAAAAATTCAATGGTCGTGCCGATCATGCTTGCCGTCAAGACACGACGCACGGAGTTTGCCTGTGGGGCAACCGCTTCTGCGACAGTCAT > 182 BAYG_02410 NA MFS_transporter,_metabolite:H+_symporter EFH32882.1 11 MNIRPEAGDVAGMNITIEETLDQAGTGSFQRGLLGIFGLVWAADAMQVLAVGFTGAAIAKTFGLTVPQALQTGTLFFLGMLVGAALFGRLADKYGRRRILLITVACDALFGLLSAFAPDFGSLLALRFLTGLAVGGTLPVDYAMMAEFLPAKNRGRWLVMLEGFWAVGTVVIAIAAWATSVAGVEDAWRYIFIVTAAPALIGIWLRFRVPESPMHLLKSGRVEEAKAVINLVLSRNGKPELPPGAKLLAPRLVTNERLLSPNLRQRTLTSLAIWFLVSVSYYGIFTWIPAKLASDGFGFVRGYGFLVVVALAQLPGYALAAYGVEAWGRRKTLIGFLFVSAAACALFTVATSSSVVGASILIMSFALLGTWGALYAFTPELYPTALRASGMGAAGAMARLGGLLAPSAMAVVINQSFYTAVAMFAGLLALAGIIAFFINVETRQQALN alpha_subgroup Brucella_abortus_bv._5_str._B3196 Brucella_abortus_bv._5_str._B3196 GG774528 584612..585958 Ward,D.,_Whatmore,A.M.,_Perrett,L.L.,_OCallaghan,D.,_Young,S.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Henn,M.R.,_Nusbaum,C._and_Birren,B. NA 0:1347 ##Genome-Assembly-Data-START##Genome_Coverage_::_21.6xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 28-MAY-2010 Brucella_abortus_bv._5_str._B3196_genomic_scaffold_supercont1.22,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_abortus_D7H7C2_BRUAB.gb Brucella_Meyer_and_Shaw_1920 297172997 Unpublished NA GG774528 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1347 NA genomic_DNA NA B3196 NA Brucella_melitensis_bv._Abortus NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 520453 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella The_Genome_Sequence_of_Brucella_abortus_bv._5_str._B3196 NA GG774528.1 CTAGTTCAGCGCCTGCTGGCGTGTTTCAACATTAATGAAGAATGCGATGATACCCGCCAGCGCCAACAGCCCTGCGAACATTGCCACCGCCGTATAGAAACTCTGGTTGATAACCACAGCCATGGCCGATGGCGCCAGAAGCCCGCCAAGGCGCGCCATCGCCCCTGCCGCCCCCATACCGCTTGCTCTTAGCGCCGTCGGATAAAGCTCTGGTGTAAAAGCATAAAGTGCGCCCCAGGTGCCGAGCAAAGCAAAGCTCATGATGAGGATGGAAGCGCCAACGACAGATGAACTTGTCGCCACCGTGAAAAGCGCGCAGGCGGCGGCGCTGACGAACAGGAACCCGATCAGCGTCTTGCGACGCCCCCATGCCTCGACGCCATAGGCGGCAAGCGCATAGCCCGGCAATTGCGCCAGTGCCACAACAACCAGAAACCCATAGCCCCGCACAAATCCGAACCCGTCGCTCGCAAGCTTTGCCGGAATCCACGTGAAAATGCCGTAATAGGAAACCGAAACCAGAAACCAGATCGCCAGGCTCGTCAATGTGCGCTGGCGCAGATTGGGTGAAAGCAGCCGCTCATTCGTCACCAGACGCGGCGCCAACAGTTTCGCGCCGGGGGGCAATTCCGGCTTGCCATTGCGGCTCAGCACCAGGTTAATAACGGCTTTTGCTTCTTCGACGCGCCCGGATTTAAGCAGATGCATCGGTGATTCCGGCACGCGGAAACGCAGCCATATGCCGATCAGGGCGGGGGCAGCGGTTACGATGAAAATATAGCGCCAGGCGTCCTCGACTCCAGCCACGCTCGTCGCCCAGGCTGCAATTGCGATCACGACCGTGCCAACTGCCCAGAACCCTTCCAGCATGACCAGCCAGCGCCCGCGATTTTTCGCCGGAAGAAACTCCGCCATCATGGCATAATCGACCGGCAAAGTACCGCCGACTGCCAAGCCGGTCAGGAAACGAAGGGCAAGCAAGGAGCCAAAATCCGGGGCGAAAGCCGAAAGCAACCCGAACAGCGCATCGCAGGCCACAGTGATGAGCAATATGCGACGGCGGCCATATTTATCGGCAAGACGGCCGAAAAGTGCAGCACCAACCAACATGCCGAGGAAGAACAGCGTTCCCGTCTGCAAGGCCTGCGGGACGGTCAGGCCGAAAGTTTTCGCAATTGCGGCACCCGTAAAGCCTACGGCCAGCACCTGCATGGCATCTGCTGCCCAGACGAGGCCAAAAATCCCAAGAAGGCCGCGCTGAAATGAGCCCGTCCCCGCCTGGTCGAGCGTTTCTTCGATCGTAATGTTCATGCCAGCAACGTCCCCTGCTTCCGGCCGAATATTCAT > 183 BCAN_B0906 NA major_facilitator_transporter YP_001594827.1 11 MAVSSSAAAGAQKMTGEERKVIFASSLGTVFEWYDFYLYGTLASFIGAAFFNEYPEATRNIFVLLAFAAGFLVRPFGALVFGRIGDLVGRKYTFLVTIVIMGGSTFLVGLLPGSASLGIFAPIILIALRMLQGLALGGEYGGAATYVAEHAPNNRRGFFTSWIQTTATLGLFLSLLVILGAQTLLSKDAFAAWGWRIPFLVSVLLLGISVWIRMQMSESPAFKRMKEEGKTSKAPLSEAFSQWKNAKIALIALFGLTAGQAVVWYCGQFYALFFLQNVLKVENQSANIMVAIALLIGTGFFVIFGWLSDKIGRKPIIMAGLILAAVTYFPLFKALTNAANPALAQAEQTVKATVTAAPGDCNFQFNATGTSKFTTSCDVATSFLAKSSVPYETVQTAAPGTPATITIGDTTIQSYDAVQADADAAAKQAALAHGVNLALQQAGFPLVRDTAKVPDSKLDAFVAANPELQLNADAIRAGDAKTMVSAADLVKQKLLTQSEAESLGVSSEQAVYSIPNAGAFKMVADPAQVNWVLTIAILTILVIYVTMVYGPIAAILVEMFPTRIRYTGMSLPYHIGNGWFGGLLPAGVFALSAAKGDIYYGLWYPIIIASVTFVIGMLFVKETKGVDLNKVD alpha_subgroup Brucella_canis_ATCC_23365 Brucella_canis_ATCC_23365 NC_010104 870035..871933 Setubal,J.C.,_Bowns,C.,_Boyle,S.,_Crasta,O.R.,_Czar,M.J.,_Dharmanolla,C.,_Gillespie,J.J.,_Kenyon,R.W.,_Lu,J.,_Mane,S.,_Mohapatra,S.,_Nagrani,S.,_Purkayastha,A.,_Rajasimha,H.K.,_Shallom,J.M.,_Shallom,S.,_Shukla,M.,_Snyder,E.E.,_Sobral,B.W.,_Wattam,A.R.,_Will,R.,_Williams,K.,_Yoo,H.,_Bruce,D.,_Detter,C.,_Munk,C._and_Brettin,T.S. NA 0:1899 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000873.Draft_sequencing_of_Brucella_canis_ATCC_23365_was_performed_at_theJoint_Genome_Institute_(JGI)_production_genomics_facility_in_WalnutCreek,_CA_using_a_combination_of_3_kb_and_8_kb_DNA_libraries._Tworounds_of_genome_finishing_were_performed_by_the_JGI_at_Los_AlamosNational_Laboratory,_Los_Alamos,_NM._The_completed_genome_sequencesof_Brucella_canis_ATCC_23365_contain_40301_reads,_achieving_anaverage_of_10-fold_sequence_coverage_per_base_with_an_error_rateless_than_1_in_100,000._Annotation_and_database_submission_werecarried_out_by_the_Pathosystems_Resource_Integration_Center,Blacksburg,_VA_(PATRIC_http://patric.vbi.vt.edu),_a_BioinformaticsResource_Center_supported_by_the_NIH/NIAID.COMPLETENESS:_full_length. NA 29-NOV-2011 Brucella_canis_ATCC_23365_chromosome_chromosome_II,_complete_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_canis_A9MCG9_BRUC2.gb Brucella_Meyer_and_Shaw_1920 161620094 Unpublished NA NC_010104 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1899 II genomic_DNA NA NA NA Brucella_melitensis_bv._Canis NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 483179 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella Brucella_canis_ATCC_23365_whole_genome_shotgun_sequencing_project NA NC_010104.1 ATGGCAGTCTCGTCAAGCGCCGCGGCCGGCGCACAAAAAATGACGGGCGAAGAGCGCAAGGTCATCTTTGCGTCCTCGCTCGGTACCGTCTTTGAATGGTATGACTTCTATCTCTATGGAACGCTGGCGTCCTTTATCGGCGCGGCCTTCTTCAACGAATACCCGGAAGCAACCCGAAACATCTTCGTTCTTCTGGCTTTTGCGGCAGGTTTCCTTGTGCGCCCCTTCGGCGCTCTCGTCTTCGGACGCATCGGCGACCTCGTCGGCCGTAAATATACATTCCTTGTTACCATCGTCATCATGGGCGGATCGACCTTCCTGGTCGGCCTTCTGCCCGGCTCCGCCTCGCTCGGCATCTTCGCACCGATCATCCTGATTGCGCTGCGCATGTTGCAGGGGCTGGCGCTCGGCGGCGAATATGGCGGCGCGGCAACCTATGTGGCCGAACATGCGCCGAACAACCGTCGCGGCTTCTTCACTTCATGGATCCAGACCACGGCAACGCTCGGCCTGTTCCTGTCGCTGCTCGTGATCCTGGGCGCCCAGACCTTGCTCAGCAAGGACGCCTTCGCGGCCTGGGGCTGGCGTATTCCGTTCCTCGTATCGGTTCTCCTGCTCGGTATTTCCGTCTGGATCCGCATGCAGATGAGCGAATCGCCCGCGTTCAAGCGCATGAAGGAAGAAGGCAAAACCTCCAAGGCCCCGCTTTCGGAAGCTTTCAGCCAGTGGAAGAATGCCAAGATCGCCCTCATCGCCCTTTTCGGCCTCACCGCCGGTCAGGCCGTTGTCTGGTATTGCGGACAGTTTTACGCCCTCTTCTTCCTTCAGAACGTGTTGAAGGTGGAAAACCAGTCGGCCAACATCATGGTGGCAATTGCCCTCCTGATCGGCACCGGCTTCTTCGTGATTTTTGGCTGGCTTTCGGACAAGATCGGCCGCAAGCCGATCATCATGGCTGGTCTCATCCTCGCCGCCGTCACCTACTTCCCGCTGTTCAAGGCGCTGACCAATGCCGCCAACCCGGCGCTGGCGCAGGCCGAACAGACCGTGAAGGCAACGGTTACGGCAGCACCCGGCGACTGTAACTTCCAGTTCAACGCCACCGGCACGTCCAAGTTCACCACCTCCTGCGATGTTGCAACAAGCTTCCTCGCCAAGAGTTCGGTGCCTTACGAAACCGTGCAGACGGCGGCGCCCGGAACACCTGCGACCATCACCATCGGCGATACCACGATCCAGTCTTATGACGCGGTTCAGGCCGATGCGGATGCCGCAGCCAAGCAGGCAGCACTTGCCCATGGCGTAAACCTTGCCTTGCAGCAGGCTGGTTTCCCGCTCGTTCGCGATACGGCGAAAGTGCCGGATAGCAAGCTCGACGCCTTCGTCGCCGCCAACCCGGAATTGCAACTCAATGCAGATGCCATTCGCGCTGGCGACGCCAAGACGATGGTTTCCGCTGCTGACCTCGTGAAGCAGAAGCTTCTTACCCAGAGCGAAGCTGAAAGCCTTGGCGTCAGTTCCGAACAGGCCGTTTATTCCATCCCGAATGCGGGCGCATTCAAGATGGTTGCTGATCCTGCACAGGTGAACTGGGTGCTGACCATCGCGATCCTGACTATCCTCGTCATCTACGTGACGATGGTATATGGCCCGATTGCAGCAATCCTCGTCGAGATGTTCCCAACCCGCATCCGCTATACCGGCATGTCGCTGCCTTATCATATCGGCAACGGCTGGTTCGGCGGCCTGCTTCCCGCTGGCGTGTTCGCGCTCAGCGCGGCCAAGGGCGACATCTATTACGGTCTCTGGTACCCGATCATCATCGCATCCGTAACCTTCGTGATCGGCATGCTGTTCGTGAAGGAAACCAAGGGAGTCGATCTCAACAAGGTCGATTGA > 184 BAIG_00927 NA major_facilitator_transporter EEX96539.1 11 MTGEERKVIFASSLGTVFEWYDFYLYGTLASFIGAAFFNEYPEATRNIFVLLAFAAGFLVRPFGALVFGRIGDLVGRKYTFLVTIVIMGGSTFLVGLLPGSASLGIFAPIILIALRMLQGLALGGEYGGAATYVAEHAPNNRRGFFTSWIQTTATLGLFLSLLVILGAQTLLSKDAFAAWGWRIPFLVSVLLLGISVWIRMQMSESPAFKRMKEEGKTSKAPLSEAFGQWKNAKIALIALFGLTAGQAVVWYCGQFYALFFLQNVLKVENQSANIMVAIALLIGTGFFVIFGWLSDKIGRKPIIMAGLILAAVTYFPLFKALTNAANPALAQAEQTVKATVTAAPGDCNFQFNATGTSKFTTSCDVATSFLAKSSVPYETVQTAAPGTPATITIGDTTIQSYDAVQAGADAAAKQAALAHGVNLALQQAGFPLVRDTAKVPDSKLDAFVAANPELQLNADAIRAGDAKTMVSAADLVKQKLLTQSEAESLGVSSEQAVYSIPNAGAFKMVADPAQVNWVLTIAILTILVIYVTMVYGPIAAILVEMFPTRIRYTGMSLPYHIGNGWFGGLLPAGVFALSAAKGDIYYGLWYPIIIASVTFVIGMLFVKETKGVDLNKVD alpha_subgroup Brucella_ceti_M644/93/1 Brucella_ceti_M644/93/1 DS999669 960894..962753 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Whatmore,A.M.,_Perrett,L.L.,_OCallaghan,D.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1860 Genome_Coverage:_38.28xSequencing_Technology:_454Annotation_was_added_to_the_scaffolds_in_October_2009. NA 14-OCT-2009 Brucella_ceti_M644/93/1_supercont1.1_genomic_scaffold,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_ceti_C9T1Z2_9RHIZ.gb Brucella_Meyer_and_Shaw_1920 221788608 Unpublished NA DS999669 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1860 NA genomic_DNA NA M644/93/1 NA Brucella_sp._B14/94 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 520459 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella The_Genome_Sequence_of_Brucella_ceti_M644/93/1 NA DS999669.1 ATGACGGGCGAAGAGCGCAAGGTCATCTTTGCGTCCTCGCTCGGTACCGTCTTTGAATGGTATGACTTCTATCTCTATGGAACGCTGGCGTCCTTTATCGGCGCGGCCTTCTTCAACGAATACCCGGAAGCAACCCGAAACATCTTCGTTCTTCTGGCTTTTGCGGCAGGTTTCCTTGTGCGCCCCTTCGGCGCTCTCGTCTTCGGACGCATCGGCGACCTCGTCGGCCGTAAATATACATTCCTTGTTACCATCGTCATCATGGGCGGATCGACCTTCCTGGTCGGCCTTCTGCCCGGCTCCGCCTCGCTCGGCATCTTCGCACCGATCATCCTGATTGCGCTGCGCATGTTGCAGGGGCTGGCGCTCGGCGGCGAATATGGCGGCGCGGCAACCTATGTGGCCGAACATGCGCCGAACAACCGTCGCGGCTTCTTCACTTCATGGATCCAGACCACGGCAACGCTCGGCCTGTTCCTGTCGCTGCTCGTGATCCTGGGCGCCCAGACCTTGCTCAGCAAGGACGCCTTCGCGGCCTGGGGCTGGCGTATTCCGTTCCTCGTATCGGTTCTCCTGCTCGGTATTTCCGTCTGGATCCGCATGCAGATGAGCGAATCGCCCGCGTTCAAGCGCATGAAGGAAGAAGGCAAAACCTCCAAGGCCCCGCTTTCGGAAGCTTTCGGCCAGTGGAAGAATGCCAAGATCGCCCTCATCGCCCTTTTCGGCCTCACCGCCGGTCAGGCCGTTGTCTGGTATTGCGGACAGTTTTACGCCCTCTTCTTCCTTCAGAACGTGTTGAAGGTGGAAAACCAGTCGGCCAACATCATGGTGGCAATTGCCCTCCTGATCGGCACCGGCTTCTTCGTGATTTTTGGCTGGCTTTCGGACAAGATCGGCCGCAAGCCGATCATCATGGCTGGTCTCATCCTCGCCGCCGTCACCTACTTCCCGCTGTTCAAGGCGCTGACCAATGCCGCCAACCCGGCGCTGGCGCAGGCCGAACAGACCGTGAAGGCAACGGTTACGGCAGCACCCGGCGACTGTAACTTCCAGTTCAACGCCACCGGCACGTCCAAGTTCACCACCTCCTGCGATGTTGCAACAAGCTTCCTCGCCAAGAGTTCGGTGCCTTACGAAACCGTGCAGACGGCGGCGCCCGGAACACCTGCGACCATCACCATCGGCGATACCACGATCCAGTCTTATGACGCGGTTCAGGCCGGTGCGGATGCCGCAGCCAAGCAGGCAGCACTTGCCCATGGCGTGAACCTTGCCTTGCAGCAGGCTGGTTTCCCGCTCGTTCGCGATACGGCGAAAGTGCCGGATAGCAAGCTCGACGCCTTCGTCGCCGCCAACCCGGAATTGCAACTCAATGCAGATGCCATTCGCGCTGGCGACGCCAAGACGATGGTTTCCGCTGCTGACCTCGTGAAGCAGAAGCTTCTTACCCAGAGCGAAGCTGAAAGCCTTGGCGTCAGTTCCGAACAGGCCGTTTATTCCATCCCGAATGCGGGCGCATTCAAGATGGTTGCTGATCCTGCACAGGTGAACTGGGTGCTGACCATCGCGATCCTGACTATCCTCGTCATCTACGTGACGATGGTATATGGCCCGATTGCAGCAATCCTCGTCGAGATGTTCCCAACCCGCATCCGCTATACCGGCATGTCGCTGCCTTATCATATCGGCAACGGCTGGTTCGGCGGCCTGCTTCCCGCTGGCGTGTTCGCGCTCAGCGCGGCCAAGGGCGACATCTATTACGGTCTCTGGTACCCGATCATCATCGCATCCGTAACCTTCGTGATCGGCATGCTGTTCGTGAAGGAAACCAAGGGAGTCGATCTCAACAAGGTCGATTGA > 185 BAQG_02758 NA major_facilitator_transporter EEX85941.1 11 MAVSSSAAAGAQKMTGEERKVIFASSLGTVFEWYDFYLYGTLASFIGAAFFNEYPEATRNIFVLLAFAAGFLVRPFGALVFGRIGDLVGRKYTFLVTIVIMGGSTFLVGLLPGSASLGIFAPIILIALRMLQGLALGGEYGGAATYVAEHAPNNRRGFFTSWIQTTATLGLFLSLLVILGAQTLLSKDAFAAWGWRIPFLVSVLLLGISVWIRMQMSESPAFKRMKEEGKTSKAPLSEAFGQWKNAKIALIALFGLTAGQAVVWYCGQFYALFFLQNVLKVENQSANIMVAIALLIGTGFFVIFGWLSDKIGRKPIIMAGLILAAVTYFPLFKALTNAANPALAQAEQTVKATVTAAPGDCNFQFNATGTSKFTTSCDVATSFLAKSSVPYETVQTAAPGTPATITIGDTTIQSYDAVQAGADAAAKQAALAHGVNLALQQAGFPLVRDTAKVPDSKLDAFVAANPELQLNADAIRAGDAKTMVSAADLVKQKLLTQSEAESLGVSSEQAVYSIPNAGAFKMVADPAQVNWVLTIAILTILVIYVTMVYGPIAAILVEMFPTRIRYTGMSLPYHIGNGWFGGLLPAGVFALSAAKGDIYYGLWYPIIIASVTFVIGMLFVKETKGVDLNKVD alpha_subgroup Brucella_ceti_B1/94 Brucella_ceti_B1/94 EQ999619 972786..974684 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Whatmore,A.M.,_Perrett,L.L.,_OCallaghan,D.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1899 Genome_Coverage:_35.16xSequencing_Technology:_454Annotation_was_added_to_the_scaffolds_in_October_2009. NA 09-OCT-2009 Brucella_ceti_B1/94_genomic_scaffold_supercont1.4,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_ceti_C9VG39_9RHIZ.gb Brucella_Meyer_and_Shaw_1920 224018056 Unpublished NA EQ999619 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1899 NA genomic_DNA NA B1/94 NA Brucella_sp._B14/94 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 520457 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella The_Genome_Sequence_of_Brucella_ceti_B1/94 NA EQ999619.1 ATGGCAGTCTCGTCAAGCGCCGCGGCCGGCGCACAAAAAATGACGGGCGAAGAGCGCAAGGTCATCTTTGCGTCCTCGCTCGGTACCGTCTTTGAATGGTATGACTTCTATCTCTATGGAACGCTGGCGTCCTTTATCGGCGCGGCCTTCTTCAACGAATACCCGGAAGCAACCCGAAACATCTTCGTTCTTCTGGCTTTTGCGGCAGGTTTCCTTGTGCGCCCCTTCGGCGCTCTCGTCTTCGGACGCATCGGCGACCTCGTCGGCCGTAAATATACATTCCTTGTTACCATCGTCATCATGGGCGGATCGACCTTCCTGGTCGGCCTTCTGCCCGGCTCCGCCTCGCTCGGCATCTTCGCACCGATCATCCTGATTGCGCTGCGCATGTTGCAGGGGCTGGCGCTCGGCGGCGAATATGGCGGCGCGGCAACCTATGTGGCCGAACATGCGCCGAACAACCGTCGCGGCTTCTTCACTTCATGGATCCAGACCACGGCAACGCTCGGCCTGTTCCTGTCGCTGCTCGTGATCCTGGGCGCCCAGACCTTGCTCAGCAAGGACGCCTTCGCGGCCTGGGGCTGGCGTATTCCGTTCCTCGTATCGGTTCTCCTGCTCGGTATTTCCGTCTGGATCCGCATGCAGATGAGCGAATCGCCCGCGTTCAAGCGCATGAAGGAAGAAGGCAAAACCTCCAAGGCCCCGCTTTCGGAAGCTTTCGGCCAGTGGAAGAATGCCAAGATCGCCCTCATCGCCCTTTTCGGCCTCACCGCCGGTCAGGCCGTTGTCTGGTATTGCGGACAGTTTTACGCCCTCTTCTTCCTTCAGAACGTGTTGAAGGTGGAAAACCAGTCGGCCAACATCATGGTGGCAATTGCCCTCCTGATCGGCACCGGCTTCTTCGTGATTTTTGGCTGGCTTTCGGACAAGATCGGCCGCAAGCCGATCATCATGGCTGGTCTCATCCTCGCCGCCGTCACCTACTTCCCGCTGTTCAAGGCGCTGACCAATGCCGCCAACCCGGCGCTGGCGCAGGCCGAACAGACCGTGAAGGCAACGGTTACGGCAGCACCCGGCGACTGTAACTTCCAGTTCAACGCCACCGGCACGTCCAAGTTCACCACCTCCTGCGATGTTGCAACAAGCTTCCTCGCCAAGAGTTCGGTGCCTTACGAAACCGTGCAGACGGCGGCGCCCGGAACACCTGCGACCATCACCATCGGCGATACCACGATCCAGTCTTATGACGCGGTTCAGGCCGGTGCGGATGCCGCAGCCAAGCAGGCAGCACTTGCCCATGGCGTGAACCTTGCCTTGCAGCAGGCTGGTTTCCCGCTCGTTCGCGATACGGCGAAAGTGCCGGATAGCAAGCTCGACGCCTTCGTCGCCGCCAACCCGGAATTGCAACTCAATGCAGATGCCATTCGCGCTGGCGACGCCAAGACGATGGTTTCCGCTGCTGACCTCGTGAAGCAGAAGCTTCTTACCCAGAGCGAAGCTGAAAGCCTTGGCGTCAGTTCCGAACAGGCCGTTTATTCCATCCCGAATGCGGGCGCATTCAAGATGGTTGCTGATCCTGCACAGGTGAACTGGGTGCTGACCATCGCGATCCTGACTATCCTCGTCATCTACGTGACGATGGTATATGGCCCGATTGCAGCAATCCTCGTCGAGATGTTCCCAACCCGCATCCGCTATACCGGCATGTCGCTGCCTTATCATATCGGCAACGGCTGGTTCGGCGGCCTGCTTCCCGCTGGCGTGTTCGCGCTCAGCGCGGCCAAGGGCGACATCTATTACGGTCTCTGGTACCCGATCATCATCGCATCCGTAACCTTCGTGATCGGCATGCTGTTCGTGAAGGAAACCAAGGGAGTCGATCTCAACAAGGTCGATTGA > 186 BAPG_00912 NA major_facilitator_transporter EEZ08249.1 11 MESVMAGQLLPIAALLASTFLMLLAGGLAGILLPLRGGMEGWSTTTIGWMGTSYSLAFTIGCIFIPHLVRRVGHVRVFSALLTLLSMALLFHALVVNPAAWMIFRGIAGFSLAGSYMIIESWLNERVTNESRGMIFSIYMIITMVGLLLGQYILPFGNAATQTLFIICAIIYASALLPTALSSAQSPNPLTQVSLDLKGLYRRSPAAVVGSFIAGIVAGTWNFLAAIYGEMNGLSTFGIATMLASAMIGGAIFQYPLGRASDFVDRRYMMILAGAIGFTLSFIMVLFHPTSPYTLYAMMFLFGSVVFPIYSLNVAHANDYADASEFVKISGGLLIVYGVGSVLGPAISGPLMDVIGANGFFVTMAIAYCIYGLHAWWRIYRLERPAISDQKTEFKFHTPDGQSTPETMQLDPRAEGTSGQAQ alpha_subgroup Brucella_ceti_M490/95/1 Brucella_ceti_M490/95/1 EQ999608 937627..938895 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Whatmore,A.M.,_Perrett,L.L.,_OCallaghan,D.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1269 Genome_Coverage:_38.16xSequencing_Technology:_454Annotation_was_added_to_the_scaffolds_in_November_2009. NA 06-NOV-2009 Brucella_ceti_M490/95/1_genomic_scaffold_supercont1.10,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_ceti_D1FEG4_9RHIZ.gb Brucella_Meyer_and_Shaw_1920 224016520 Unpublished NA EQ999608 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1269 NA genomic_DNA NA M490/95/1 NA Brucella_sp._B14/94 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 520458 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella The_Genome_Sequence_of_Brucella_ceti_M490/95/1 NA EQ999608.1 TTATTGCGCCTGCCCCGATGTGCCTTCCGCACGCGGGTCGAGCTGCATGGTTTCCGGTGTCGATTGCCCGTCGGGCGTGTGGAACTTGAACTCGGTCTTCTGGTCGCTGATTGCGGGGCGCTCCAGCCGGTAGATGCGCCACCAGGCGTGCAGCCCATAGATGCAATAGGCAATCGCCATGGTGACGAAAAATCCGTTCGCGCCGATGACATCCATCAGCGGGCCTGAAATTGCTGGCCCAAGCACGCTGCCAACCCCATAGACGATGAGCAGCCCGCCGGAAATCTTTACGAATTCGCTGGCATCGGCATAGTCGTTCGCATGGGCGACGTTCAGGCTATAGATCGGAAAGACCACCGAGCCGAACAGAAACATCATCGCATAGAGCGTATAGGGCGAGGTCGGGTGAAACAGCACCATGATGAACGACAGGGTGAAGCCGATGGCGCCTGCAAGGATCATCATATAGCGGCGGTCGACGAAATCGGAAGCGCGTCCAAGCGGGTACTGGAAGATTGCGCCGCCGATCATCGCCGAGGCAAGCATGGTGGCGATGCCGAAAGTGGAAAGCCCGTTCATCTCCCCATAGATGGCGGCAAGGAAATTCCATGTGCCTGCCACGATGCCTGCGATGAAGGAGCCGACAACTGCGGCGGGCGAGCGGCGGTAAAGCCCTTTGAGGTCCAGCGAAACCTGTGTCAGCGGGTTGGGTGACTGGGCGCTTGAAAGTGCTGTGGGCAGAAGCGCGCTGGCATAGATAATGGCGCAGATGATGAAAAGTGTCTGCGTGGCGGCATTGCCGAAGGGTAGGATATACTGCCCCAGAAGCAGCCCGACCATGGTGATGATCATATAGATCGAGAAGATCATGCCGCGCGATTCATTGGTCACGCGCTCGTTCAGCCAGCTTTCGATAATCATGTAGGAACCGGCGAGGGAGAAGCCCGCAATGCCGCGAAAAATCATCCACGCGGCCGGGTTGACCACCAGTGCATGGAACAGCAGCGCCATGGACAGCAGCGTCAGAAGCGCCGAAAAGACACGCACATGGCCGACGCGGCGCACCAGATGCGGAATGAAAATGCAGCCGATGGTGAAGGCCAGCGAATAGCTTGTCCCCATCCAGCCGATTGTCGTCGTGGACCAGCCTTCCATGCCACCGCGAAGCGGAAGGAGAATACCGGCAAGGCCGCCTGCGAGCAGCATGAGAAATGTGCTTGCCAGCAGCGCGGCTATGGGCAGAAGCTGTCCCGCCATGACGGACTCCAC > 187 BAWG_1843 NA major_facilitator_transporter EEW87364.1 11 MNITIEETLDQAGTGSFQRGLLGIFGLVWAADAMQVLAVGFTGAAIAKTFGLTVPQALQTGTLFFLGMLVGAALFGRLADKYGRRRILLITVACDALFGLLSAFAPDFGSLLALRFLTGLAVGGTLPVDYAMMAEFLPAKNRGRWLVMLEGFWAVGTVVIAIAAWATSVAGVEDAWRYIFIVTAAPALIGIWLRFRVPESPMHLLKSGRVEEAKAVINLVLSRNGKPELPPGAKLLAPRLVTNERLLSPNLRQRTLTSLAIWFLVSVSYYGIFTWIPAKLASDGFGFVRGYGFLVVVALAQLPGYALAAYGVEAWGRRKTLIGFLFVSAAACALFTVATSSSVVGASILIMSFALLGTWGALYAFTPELYPTALRASGMGAAGAMARLGGLLAPSAMAVVINQSFYTAVAMFAGLLALAGIIAFFINVETRQQALN alpha_subgroup Brucella_melitensis_bv._1_str._16M Brucella_melitensis_bv._1_str._16M GG703779 589697..591007 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Whatmore,A.M.,_Perrett,L.L.,_OCallaghan,D.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1311 Genome_Coverage:_74.08xSequencing_Technology:_454. NA 30-SEP-2009 Brucella_melitensis_bv._1_str._16M_genomic_scaffold_supercont1.2,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_melitensis_D0B6X2_BRUME.gb Brucella_Meyer_and_Shaw_1920 260151725 Unpublished NA GG703779 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1311 NA genomic_DNA NA 16M NA Streptococcus_Miletensis NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 224914 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella The_Genome_Sequence_of_Brucella_melitensis_bv._1_str._16M NA GG703779.1 ATGAACATTACGATCGAAGAAACGCTCGACCAGGCGGGGACGGGCTCATTTCAGCGCGGCCTTCTTGGGATTTTTGGCCTCGTCTGGGCAGCAGATGCCATGCAGGTGCTGGCCGTAGGCTTTACGGGTGCCGCAATTGCGAAAACTTTCGGCCTGACCGTCCCGCAGGCCTTGCAGACGGGGACGCTGTTCTTCCTCGGCATGTTGGTTGGTGCTGCACTTTTCGGCCGTCTTGCCGATAAATATGGCCGCCGTCGCATATTGCTCATCACTGTGGCCTGCGATGCGCTGTTCGGGTTGCTTTCGGCTTTCGCCCCGGATTTTGGCTCCTTGCTTGCCCTTCGTTTCCTGACCGGCTTGGCAGTCGGCGGTACTTTGCCGGTCGATTATGCCATGATGGCGGAGTTTCTTCCGGCGAAAAATCGCGGGCGCTGGCTGGTCATGCTGGAAGGGTTCTGGGCAGTTGGCACGGTCGTGATCGCAATTGCAGCCTGGGCGACGAGCGTGGCTGGAGTCGAGGACGCCTGGCGCTATATTTTCATCGTAACCGCTGCCCCCGCCCTGATCGGCATATGGCTGCGTTTCCGCGTGCCGGAATCACCGATGCATCTGCTTAAATCCGGGCGCGTCGAAGAAGCAAAAGCCGTTATTAACCTGGTGCTGAGCCGCAATGGCAAGCCGGAATTGCCCCCCGGCGCGAAACTGTTGGCGCCGCGTCTGGTGACGAATGAGCGGCTGCTTTCACCCAATCTGCGCCAGCGCACATTGACGAGCCTGGCGATCTGGTTTCTGGTTTCGGTTTCCTATTACGGCATTTTCACGTGGATTCCGGCAAAGCTTGCGAGCGACGGGTTCGGATTTGTGCGGGGCTATGGGTTTCTGGTTGTTGTGGCACTGGCGCAATTGCCGGGCTATGCGCTTGCCGCCTATGGCGTCGAGGCATGGGGGCGTCGCAAGACGCTGATCGGGTTCCTGTTCGTCAGCGCCGCCGCCTGCGCGCTTTTCACGGTGGCGACAAGTTCATCTGTCGTTGGCGCTTCCATCCTCATCATGAGCTTTGCTTTGCTCGGCACCTGGGGCGCACTTTATGCTTTTACACCAGAGCTTTATCCGACGGCGCTAAGAGCAAGCGGTATGGGGGCGGCAGGGGCGATGGCGCGCCTTGGCGGGCTTCTGGCGCCATCGGCCATGGCTGTGGTTATCAACCAGAGTTTCTATACGGCGGTGGCAATGTTCGCAGGGCTGTTGGCGCTGGCGGGTATCATCGCATTCTTCATTAATGTTGAAACACGCCAGCAGGCGCTGAACTAG > 188 BASG_01077 NA major_facilitator_family_transporter EEZ16236.1 11 MAVSSSAAAGAQKMTGEERKVIFASSLGTVFEWYDFYLYGTLASFIGAAFFNEYPEATRNIFVLLAFAAGFLVRPFGALVFGRIGDLVGRKYTFLVTIVIMGGSTFLVGLLPGSASLGIFAPIILIALRMLQGLALGGEYGGAATYVAEHAPNNRRGFFTSWIQTTATLGLFLSLLVILGAQTLLSKDAFAAWGWRIPFLVSVLLLGISVWIRMQMSESPAFKRMKEEGKTSKAPLSEAFGQWKNAKIALIALFGLTAGQAVVWYCGQFYALFFLQNVLKVENQSANIMVAIALLIGTGFFVIFGWLSDKIGRKPIIMAGLILAAVTYFPLFKALTNAANPALAQAEQTVKATVMAAPGDCNFQFNATGTSKFTTSCDVATSFLAKSSVPYETVQTAAPGTPATITIGDTTIQSYDAVQAGTDAAAKQAALAHGVNLALQQAGFPLVRDTAKVPDSKLDAFVAANPELQLNADAIRAGDAKTMVSAADLVKQKLLTQSEAESLGVSSEQAVYSIPNAGAFKMVADPAQVNWVLTIAILTILVIYVTMVYGPIAAILVEMFPTRIRYTGMSLPYHIGNGWFGGLLPAGVFALSAAKGDIYYGLWYPIIIASVTFVIGMLFVKETKGVDLNKVD alpha_subgroup Brucella_melitensis_bv._2_str._63/9 Brucella_melitensis_bv._2_str._63/9 ACEM01000009 102835..104733 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Whatmore,A.M.,_Perrett,L.L.,_OCallaghan,D.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1899 Genome_Coverage:_16.24xSequencing_Technology:_454Annotation_was_added_to_the_contigs_in_November_2009. NA 06-NOV-2009 Brucella_melitensis_bv._2_str._63/9_cont1.9,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_melitensis_D0GA55_BRUME.gb Brucella_Meyer_and_Shaw_1920 223712669 Unpublished NA ACEM01000009 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1899 NA genomic_DNA NA 63/9 NA Streptococcus_Miletensis NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 520465 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella The_Genome_Sequence_of_Brucella_melitensis_bv._2_str._63/9 NA ACEM01000009.1 TCAATCGACCTTGTTGAGATCGACTCCCTTGGTTTCCTTCACGAACAGCATGCCGATCACGAAGGTTACGGATGCGATGATGATCGGGTACCAGAGACCGTAATAGATGTCGCCCTTGGCCGCGCTGAGCGCGAACACGCCAGCGGGAAGCAGGCCGCCGAACCAGCCGTTGCCGATATGATAAGGTAGCGACATGCCGGTATAGCGGATGCGGGTTGGGAACATCTCGACGAGGATTGCTGCAATCGGGCCATATACCATCGTCACGTAGATGACGAGGATAGTCAGGATCGCGATGGTCAGCACCCAGTTCACCTGTGCAGGATCAGCAACCATCTTGAATGCGCCCGCATTCGGGATGGAATAAACGGCCTGTTCGGAACTGACGCCAAGGCTTTCAGCTTCGCTCTGGGTAAGAAGCTTCTGCTTCACGAGGTCAGCAGCGGAAACCATCGTCTTGGCGTCGCCAGCGCGAATGGCATCTGCATTGAGTTGCAATTCCGGGTTGGCGGCGACGAAGGCGTCGAGCTTGCTATCCGGCACTTTCGCTGTATCGCGAACGAGCGGGAAACCAGCCTGCTGCAAGGCAAGGTTCACGCCATGGGCAAGTGCTGCCTGCTTGGCTGCGGCATCCGTACCGGCCTGAACCGCGTCATAAGACTGGATCGTGGTATCGCCGATGGTGATGGTCGCAGGTGTTCCGGGCGCCGCCGTCTGCACGGTTTCGTAAGGCACCGAACTCTTGGCGAGGAAGCTTGTTGCAACATCGCAGGAGGTGGTGAACTTGGACGTGCCGGTGGCGTTGAACTGGAAGTTACAGTCGCCGGGTGCTGCCATAACCGTTGCCTTCACGGTCTGTTCGGCCTGCGCCAGCGCCGGGTTGGCGGCATTGGTCAGCGCCTTGAACAGCGGGAAGTAGGTGACGGCGGCGAGGATGAGACCAGCCATGATGATCGGCTTGCGGCCGATCTTGTCCGAAAGCCAGCCAAAAATCACGAAGAAGCCGGTGCCGATCAGGAGGGCAATTGCCACCATGATGTTGGCCGACTGGTTTTCCACCTTCAACACGTTCTGAAGGAAGAAGAGGGCGTAAAACTGTCCGCAATACCAGACAACGGCCTGACCGGCGGTGAGGCCGAAAAGGGCGATGAGGGCGATCTTGGCATTCTTCCACTGGCCGAAAGCTTCCGAAAGCGGGGCCTTGGAGGTTTTGCCTTCTTCCTTCATGCGCTTGAACGCGGGCGATTCGCTCATCTGCATGCGGATCCAGACGGAAATACCGAGCAGGAGAACCGATACGAGGAACGGAATACGCCAGCCCCAGGCCGCGAAGGCGTCCTTGCTGAGCAAGGTCTGGGCGCCCAGGATCACGAGCAGCGACAGGAACAGGCCGAGCGTTGCCGTGGTCTGGATCCATGAAGTGAAGAAGCCGCGACGGTTGTTCGGCGCATGTTCGGCCACATAGGTTGCCGCGCCGCCATATTCGCCGCCGAGCGCCAGCCCCTGCAACATGCGCAGCGCAATCAGGATGATCGGTGCGAAGATGCCGAGCGAGGCGGAGCCGGGCAGAAGGCCGACCAGGAAGGTCGATCCGCCCATGATGACGATGGTAACAAGGAATGTATATTTACGGCCGACGAGGTCGCCGATGCGTCCGAAGACGAGAGCGCCGAAGGGGCGCACAAGGAAACCTGCCGCAAAAGCCAGAAGAACGAAGATGTTTCGGGTTGCTTCCGGGTATTCGTTGAAGAAGGCCGCGCCGATAAAGGACGCCAGCGTTCCATAGAGATAGAAGTCATACCATTCAAAGACGGTACCGAGCGAGGACGCAAAGATGACCTTGCGCTCTTCGCCCGTCATTTTTTGTGCGCCGGCCGCGGCGCTTGACGAGACTGCCAT > 189 BAMG_01844 NA major_facilitator_transporter EEZ13207.1 11 MNITIEETLDQAGTGSFQRGLLGIFGLVWAADAMQVLAVGFTGAAIAKTFGLTVPQALQTGTLFFLGMLVGAALFGRLADKYGRRRILLITVACDALFGLLSAFAPDFGSLLALRFLTGLAVGGTLPVDYAMMAEFLPAKNRGRWLVMLEGFWAVGTVVIAIAAWATSVAGVEDAWRYIFIVTAAPALIGIWLRFRVPESPMHLLKSGRVEEAKAVINLVLSRNGKPELPPGAKLLAPRLVTNERLLSPNLRQRTLTSLAIWFLVSVSYYGIFTWIPAKLASDGFGFVRGYGFLVVVALAQLPGYALAAYGVEAWGRRKTLIGFLFVSAAACALFTVATSSSVVGASILIMSFALLGTWGALYAFTPELYPTALRASGMGAAGAMARLGGLLAPSAMAVVINQSFYTAVAMFAGLLALAGIIAFFINVETRQQALN alpha_subgroup Brucella_melitensis_bv._1_str._Rev.1 Brucella_melitensis_bv._1_str._Rev.1 EQ999555 587848..589158 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Whatmore,A.M.,_Perrett,L.L.,_OCallaghan,D.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1311 Genome_Coverage:_32.14xSequencing_Technology:_454Annotation_was_added_to_the_scaffolds_in_November_2009. NA 06-NOV-2009 Brucella_melitensis_bv._1_str._Rev.1_genomic_scaffold_supercont1.7,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_melitensis_D1EU68_BRUME.gb Brucella_Meyer_and_Shaw_1920 224016482 Unpublished NA EQ999555 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1311 NA genomic_DNA NA Rev.1 NA Streptococcus_Miletensis NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 520464 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella The_Genome_Sequence_of_Brucella_melitensis_bv._1_str._Rev.1 NA EQ999555.1 ATGAACATTACGATCGAAGAAACGCTCGACCAGGCGGGGACGGGCTCATTTCAGCGCGGCCTTCTTGGGATTTTTGGCCTCGTCTGGGCAGCAGATGCCATGCAGGTGCTGGCCGTAGGCTTTACGGGTGCCGCAATTGCGAAAACTTTCGGCCTGACCGTCCCGCAGGCCTTGCAGACGGGGACGCTGTTCTTCCTCGGCATGTTGGTTGGTGCTGCACTTTTCGGCCGTCTTGCCGATAAATATGGCCGCCGTCGCATATTGCTCATCACTGTGGCCTGCGATGCGCTGTTCGGGTTGCTTTCGGCTTTCGCCCCGGATTTTGGCTCCTTGCTTGCCCTTCGTTTCCTGACCGGCTTGGCAGTCGGCGGTACTTTGCCGGTCGATTATGCCATGATGGCGGAGTTTCTTCCGGCGAAAAATCGCGGGCGCTGGCTGGTCATGCTGGAAGGGTTCTGGGCAGTTGGCACGGTCGTGATCGCAATTGCAGCCTGGGCGACGAGCGTGGCTGGAGTCGAGGACGCCTGGCGCTATATTTTCATCGTAACCGCTGCCCCCGCCCTGATCGGCATATGGCTGCGTTTCCGCGTGCCGGAATCACCGATGCATCTGCTTAAATCCGGGCGCGTCGAAGAAGCAAAAGCCGTTATTAACCTGGTGCTGAGCCGCAATGGCAAGCCGGAATTGCCCCCCGGCGCGAAACTGTTGGCGCCGCGTCTGGTGACGAATGAGCGGCTGCTTTCACCCAATCTGCGCCAGCGCACATTGACGAGCCTGGCGATCTGGTTTCTGGTTTCGGTTTCCTATTACGGCATTTTCACGTGGATTCCGGCAAAGCTTGCGAGCGACGGGTTCGGATTTGTGCGGGGCTATGGGTTTCTGGTTGTTGTGGCACTGGCGCAATTGCCGGGCTATGCGCTTGCCGCCTATGGCGTCGAGGCATGGGGGCGTCGCAAGACGCTGATCGGGTTCCTGTTCGTCAGCGCCGCCGCCTGCGCGCTTTTCACGGTGGCGACAAGTTCATCTGTCGTTGGCGCTTCCATCCTCATCATGAGCTTTGCTTTGCTCGGCACCTGGGGCGCACTTTATGCTTTTACACCAGAGCTTTATCCGACGGCGCTAAGAGCAAGCGGTATGGGGGCGGCAGGGGCGATGGCGCGCCTTGGCGGGCTTCTGGCGCCATCGGCCATGGCTGTGGTTATCAACCAGAGTTTCTATACGGCGGTGGCAATGTTCGCAGGGCTGTTGGCGCTGGCGGGTATCATCGCATTCTTCATTAATGTTGAAACACGCCAGCAGGCGCTGAACTAG > 190 BAKG_02206 NA major_facilitator_transporter EEZ34191.1 11 MTVAEAVAPQANSVRRVLTASMIGTTIEFFDFYIYATAAVIVFPHLFFPASDGNSALLQSFATFAIAFFARPIGAAIFGHFGDKIGRKATLVAALMTMGLSTVAIGFLPTYASIGVAAPLLLALCRLGQGLGLGGEWGGAVLLATENAPEGKRTWYGMFPQLGAPAGFILATGIFLLLAETMTEEQFFAYGWRVPFIASAILVAVGLFIRLRIAETPEFQKAIDKAERVAVPAAQLFRHHKMNLFLGTIGTMATFVLFYLMTVFSLGWGTRALGYSREEFLVLQMIGVIFFGLTIPLSALLSDRYGMRTIMVIVTVLIGLYGFIMAPLFAAGTAGVLGFLIIGFGLMGMTYGPIGTVLAEPFPTAVRYTGASLAFNLAGILGASLAPYIATWLATDYGFAYVGYYMVAAAIISLIGFVFITLKDKK alpha_subgroup Brucella_sp._83/13 Brucella_sp._83/13 DS999659 460304..461584 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Whatmore,A.M.,_Perrett,L.L.,_OCallaghan,D.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1281 Genome_Coverage:_28.53xSequencing_Technology:_454Annotation_was_added_to_the_scaffolds_in_November_2009. NA 09-NOV-2009 Brucella_sp._83/13_supercont1.11_genomic_scaffold,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_sp_D1D0Z8_9RHIZ.gb Brucella_Meyer_and_Shaw_1920 221769926 Unpublished NA DS999659 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1281 NA genomic_DNA NA 83/13 NA Brucella_sp._83/13 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 520449 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella The_Genome_Sequence_of_Brucella_sp._83/13 NA DS999659.1 CTATTTTTTGTCTTTCAGCGTGATGAAGACAAAGCCGATCAGCGAAATAATTGCCGCTGCGACCATGTAATAGCCGACATAGGCAAAGCCGTAATCGGTGGCGAGCCAGGTGGCGATATAAGGGGCCAGCGACGCGCCCAGAATACCGGCCAGATTGAAGGCCAGCGACGCGCCCGTATAGCGCACCGCAGTCGGGAAGGGTTCGGCAAGAACCGTGCCGATGGGGCCATAGGTCATGCCCATCAGCCCAAAGCCGATGATGAGAAAGCCCAGCACGCCAGCGGTGCCCGCCGCAAAGAGCGGCGCCATGATGAAGCCGTAGAGGCCGATCAGCACGGTGACGATGACCATGATAGTGCGCATGCCGTAGCGGTCGGAGAGCAGGGCGGAAAGCGGGATGGTGAGGCCGAAGAAGATGACGCCGATCATCTGAAGCACGAGGAATTCCTCGCGGCTGTAGCCCAGTGCGCGCGTGCCCCAGCCGAGCGAAAACACGGTCATGAGATAGAAGAGCACGAAAGTTGCCATGGTGCCGATGGTGCCAAGGAACAGGTTCATCTTGTGATGCCTGAAAAGCTGTGCGGCTGGCACGGCGACCCTTTCAGCCTTGTCGATGGCTTTCTGGAACTCCGGTGTTTCGGCAATCCGCAGGCGAATGAAAAGGCCCACGGCCACAAGAATTGCACTGGCGATGAAGGGAACACGCCAGCCATAGGCAAAGAACTGTTCTTCGGTCATGGTTTCGGCGAGCAGCAGGAAAATGCCCGTGGCCAGAATGAAGCCTGCCGGTGCGCCAAGCTGCGGGAACATGCCATACCAGGTCCGCTTGCCTTCCGGTGCGTTTTCGGTGGCGAGCAGCACTGCGCCGCCCCATTCACCGCCAAGACCCAGCCCCTGACCCAGACGGCAGAGCGCCAGCAGAAGCGGGGCCGCAACGCCGATGGAGGCATAAGTTGGCAGGAAACCGATGGCAACTGTGGAAAGCCCCATGGTCATCAGTGCCGCGACGAGCGTGGCCTTGCGGCCGATCTTGTCACCGAAATGGCCGAAAATCGCAGCGCCGATCGGGCGGGCGAAAAAGGCGATGGCGAAAGTGGCAAAGGATTGCAACAGTGCGGAATTGCCGTCGCTTGCCGGGAAAAACAGGTGCGGGAATACGATCACCGCAGCCGTTGCATAAATATAGAAATCGAAAAATTCAATGGTCGTGCCGATCATGCTTGCCGTCAAGACACGACGCACGGAGTTTGCCTGTGGGGCAACCGCTTCTGCGACAGTCAT > 191 BROD_0210 NA major_facilitator_transporter EFM63662.1 11 MTVAEAVAPQANSVRRVLTASMIGTTIEFFDFYIYATAAVIVFPHLFFPASDGNSALLQSFATFAIAFFARPIGAAIFGHFGDKIGRKATLVAALMTMGLSTVAIGFLPTYASIGVAAPLLLALCRLGQGLGLGGEWGGAVLLATENAPEGKRTWYGMFPQLGAPAGFILATGIFLLLAETMTEEQFFAYGWRVPFIASAILVAVGLFIRLRIAETPEFQKAIDKAERVAVPAAQLFRHHKMNLFLGTIGTMATFVLFYLMTVFSLGWGTRALGYSREEFLVLQMIGVIFFGLTIPLSALLSDRYGMRTIMVIVTVLIGLYGFIMAPLFAAGTAGVLGFLIIGFGLMGMTYGPIGTVLAEPFPTAVRYTGASLAFNLAGILGASLAPYIATWLATDYGFAYVGYYMVAAAIISLIGFVFITLKDKK alpha_subgroup Brucella_sp._NF_2653 Brucella_sp._NF_2653 ADFB01000015 33740..35020 Setubal,J.C.,_Boyle,S.,_Crasta,O.R.,_Kenyon,R.W.,_Mane,S.,_Shukla,M.,_Snyder,E.E.,_Sobral,B.W.,_Wattam,A.R.,_Will,R.,_Williams,K.,_Yoo,H.,_Frace,M.A.,_Sammons,S.A.,_Hoffmaster,A.R.,_Tiller,R.V.,_Olsen-Rasmussen,M._and_De,B.K. NA 0:1281 Source_available_from:_Barun_Kumar_De_(CDC/CCID/NCZVED).Brucella_rodentia_sp._NF_2653_was_isolated_from_a_wild_nativerodent_(Melomys_lutillus,_commonly_known_as_the_small_climbing_rat)in_North_Queensland,_Australia.Annotation_and_database_submission_were_carried_out_by_thePathosystems_Resource_Integration_Center,_Blacksburg,_VA_(PATRIChttp://patric.vbi.vt.edu),_a_Bioinformatics_Resource_Centersupported_by_the_NIH/NIAID.##Genome-Assembly-Data-START##Assembly_Method_::_Newbler_v._2.0.00.22Genome_Coverage_::_29.1xSequencing_Technology_::_Roche/454_FLX##Genome-Assembly-Data-END## NA 03-SEP-2010 Brucella_sp._NF_2653_VBI00228_111,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_sp_E0DT50_9RHIZ.gb Brucella_Meyer_and_Shaw_1920 306407430 Submitted_(11-MAY-2010)_The_Pathosystems_Resource_Integration_Center_(PATRIC),_Virginia_Bioinformatics_Institute_at_Virginia_Polytechnic_Institute_and_State_University,_Bioinformatics_I,_Washington_Street,_Blacksburg,_VA_24061,_USA NA ADFB01000015 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1281 NA genomic_DNA NA NF_2653 NA Brucella_sp._NF_2653 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 693748 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella Direct_Submission NA ADFB01000015.1 CTATTTTTTGTCTTTCAGCGTGATGAAGACAAAGCCGATCAGCGAAATAATTGCCGCTGCGACCATGTAATAGCCGACATAGGCAAAGCCGTAATCGGTGGCGAGCCAGGTGGCGATATAAGGGGCCAGCGACGCGCCCAGAATACCGGCCAGATTGAAGGCCAGCGACGCGCCCGTATAGCGCACCGCAGTCGGGAAGGGTTCGGCAAGAACCGTGCCGATGGGGCCATAGGTCATGCCCATCAGCCCAAAGCCGATGATGAGAAAGCCCAGCACGCCAGCGGTGCCCGCCGCAAAGAGCGGCGCCATGATGAAGCCGTAGAGGCCGATCAGCACGGTGACGATGACCATGATAGTGCGCATGCCGTAGCGGTCGGAGAGCAGGGCGGAAAGCGGGATGGTGAGGCCGAAGAAGATGACGCCGATCATCTGAAGCACGAGGAATTCCTCGCGGCTGTAGCCCAGTGCGCGCGTGCCCCAGCCGAGCGAAAACACGGTCATGAGATAGAAGAGCACGAAAGTTGCCATGGTGCCGATGGTGCCAAGGAACAGGTTCATCTTGTGATGCCTGAAAAGCTGTGCGGCTGGCACGGCGACCCTTTCAGCCTTGTCGATGGCTTTCTGGAACTCCGGTGTTTCGGCAATCCGCAGGCGAATGAAAAGGCCCACGGCCACAAGAATTGCACTGGCGATGAAGGGAACACGCCAGCCATAGGCAAAGAACTGTTCTTCGGTCATGGTTTCGGCGAGCAGCAGGAAAATGCCCGTGGCCAGAATGAAGCCTGCCGGTGCGCCAAGCTGCGGGAACATGCCATACCAGGTCCGCTTGCCTTCCGGTGCGTTTTCGGTGGCGAGCAGCACTGCGCCGCCCCATTCACCGCCAAGACCCAGCCCCTGACCCAGACGGCAGAGCGCCAGCAGAAGCGGGGCCGCAACGCCGATGGAGGCATAAGTTGGCAGGAAACCGATGGCAACTGTGGAAAGCCCCATGGTCATCAGTGCCGCGACGAGCGTGGCCTTGCGGCCGATCTTGTCACCGAAATGGCCGAAAATCGCAGCGCCGATCGGGCGGGCGAAAAAGGCGATGGCGAAAGTGGCAAAGGATTGCAACAGTGCGGAATTGCCGTCGCTTGCCGGGAAAAACAGGTGCGGGAATACGATCACCGCAGCCGTTGCATAAATATAGAAATCGAAAAATTCAATGGTCGTGCCGATCATGCTTGCCGTCAAGACACGACGCACGGAGTTTGCCTGTGGGGCAACCGCTTCTGCGACAGTCAT > 192 BROD_1435 NA major_facilitator_family_transporter EFM62499.1 11 MAVSSSAAAGAQKMTGEERKVIFASSLGTVFEWYDFYLYGTLASFIGAAFFNEYPEATRNIFVLLAFAAGFLVRPFGALVFRRIGDLVGRKYTFLVTIVIMGGSTFLVGLLPGSASLGIFAPIILIALRMLQGLALGGEYGGAATYVAEHAPNNRRGFFTSWIQTTATLGLFLSLLVILGAQTLLSKDAFAAWGWRIPFLVSVLLLGISVWIRMQMSESPAFKRMKEEGKTSKAPLSEAFGQWKNAKIALIALFGLTAGQAVVWYCGQFYALFFLQNVLKVENQSANIMVAIALLIGTGFFVIFGWLSDKIGRKPIIMAGLILAAVTYFPLFKALTNAANPALAQAEQTVKATVTAAPGDCNFQFNATGTSKFTTSCDVATSFLAKSSVPYETVQTAAPGTPATITIGDTTIQSYDAVQAGADAAAKQAALAHGVNLALQQAGFPLVRDTAKVPDSKLDAFVAANPELQLNADAIRAGDAKTMVSAADLVKQKLLTQSEAESLGVSSEQAVYSIPNAGAFKMVADPAQVNWVLTIAILTILVIYVTMVYGPIAAILVEMFPTRIRYTGMSLPYHIGNGWFGGLLPAGVFALSAAKGDIYYGLWYPIIIASVTFVIGMLFVKETKGVDLNKVD alpha_subgroup Brucella_sp._NF_2653 Brucella_sp._NF_2653 ADFB01000055 34595..36493 Setubal,J.C.,_Boyle,S.,_Crasta,O.R.,_Kenyon,R.W.,_Mane,S.,_Shukla,M.,_Snyder,E.E.,_Sobral,B.W.,_Wattam,A.R.,_Will,R.,_Williams,K.,_Yoo,H.,_Frace,M.A.,_Sammons,S.A.,_Hoffmaster,A.R.,_Tiller,R.V.,_Olsen-Rasmussen,M._and_De,B.K. NA 0:1899 Source_available_from:_Barun_Kumar_De_(CDC/CCID/NCZVED).Brucella_rodentia_sp._NF_2653_was_isolated_from_a_wild_nativerodent_(Melomys_lutillus,_commonly_known_as_the_small_climbing_rat)in_North_Queensland,_Australia.Annotation_and_database_submission_were_carried_out_by_thePathosystems_Resource_Integration_Center,_Blacksburg,_VA_(PATRIChttp://patric.vbi.vt.edu),_a_Bioinformatics_Resource_Centersupported_by_the_NIH/NIAID.##Genome-Assembly-Data-START##Assembly_Method_::_Newbler_v._2.0.00.22Genome_Coverage_::_29.1xSequencing_Technology_::_Roche/454_FLX##Genome-Assembly-Data-END## NA 03-SEP-2010 Brucella_sp._NF_2653_VBI00228_46,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_sp_E0DWF7_9RHIZ.gb Brucella_Meyer_and_Shaw_1920 306406225 Submitted_(11-MAY-2010)_The_Pathosystems_Resource_Integration_Center_(PATRIC),_Virginia_Bioinformatics_Institute_at_Virginia_Polytechnic_Institute_and_State_University,_Bioinformatics_I,_Washington_Street,_Blacksburg,_VA_24061,_USA NA ADFB01000055 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1899 NA genomic_DNA NA NF_2653 NA Brucella_sp._NF_2653 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 693748 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella Direct_Submission NA ADFB01000055.1 ATGGCAGTCTCGTCAAGCGCCGCGGCCGGCGCACAAAAAATGACGGGCGAAGAGCGCAAGGTCATCTTTGCGTCCTCGCTCGGTACCGTCTTTGAATGGTATGACTTCTATCTCTATGGAACGCTGGCGTCCTTCATCGGCGCGGCCTTCTTCAACGAATACCCGGAAGCAACCCGAAACATCTTCGTTCTTCTGGCTTTTGCGGCAGGTTTCCTTGTGCGCCCCTTCGGCGCTCTCGTCTTCAGACGCATCGGCGACCTCGTCGGCCGTAAATATACATTCCTTGTTACCATCGTCATCATGGGCGGATCGACCTTCCTGGTCGGCCTTCTGCCCGGCTCCGCCTCGCTCGGCATCTTCGCACCGATCATCCTAATTGCACTGCGCATGTTGCAGGGTCTGGCGCTCGGCGGCGAATATGGCGGCGCGGCAACCTATGTGGCCGAACATGCGCCGAATAACCGTCGCGGCTTCTTCACTTCATGGATCCAGACCACGGCAACGCTCGGCCTGTTCCTGTCGCTGCTCGTGATCCTGGGCGCCCAGACCTTGCTCAGCAAGGACGCCTTCGCGGCTTGGGGCTGGCGTATTCCGTTCCTCGTATCGGTTCTCCTGCTCGGTATTTCCGTCTGGATCCGCATGCAGATGAGCGAATCGCCCGCGTTCAAGCGCATGAAAGAAGAAGGCAAAACCTCCAAGGCCCCGCTTTCGGAAGCTTTCGGCCAGTGGAAGAATGCCAAGATCGCCCTCATCGCCCTTTTCGGCCTCACCGCCGGTCAGGCCGTTGTCTGGTATTGCGGACAGTTTTACGCCCTCTTCTTCCTTCAGAACGTGTTGAAGGTGGAAAACCAGTCGGCCAACATCATGGTGGCAATCGCCCTCCTGATCGGCACCGGCTTCTTCGTGATCTTTGGCTGGCTTTCGGACAAGATCGGCCGCAAGCCGATCATCATGGCTGGCCTCATCCTCGCCGCCGTCACCTACTTCCCACTGTTCAAGGCTCTGACCAATGCCGCAAACCCGGCACTGGCGCAGGCCGAACAGACCGTGAAGGCAACGGTTACGGCAGCACCCGGCGACTGTAACTTCCAGTTCAATGCCACGGGCACGTCCAAGTTCACCACCTCCTGCGATGTTGCAACAAGCTTCCTCGCCAAGAGTTCGGTGCCTTACGAAACCGTGCAGACGGCGGCGCCCGGAACGCCTGCGACCATCACCATCGGCGATACCACGATCCAGTCTTATGACGCGGTTCAGGCCGGTGCGGATGCCGCAGCCAAGCAGGCAGCACTTGCCCATGGCGTGAACCTTGCCTTGCAGCAGGCCGGTTTCCCGCTCGTTCGCGATACGGCGAAAGTGCCGGATAGCAAGCTCGACGCCTTCGTCGCCGCCAACCCCGAATTGCAACTCAATGCAGATGCCATTCGCGCTGGCGACGCCAAAACGATGGTTTCCGCTGCTGACCTCGTGAAGCAGAAGCTTCTTACCCAGAGCGAAGCTGAAAGCCTTGGCGTCAGTTCCGAACAGGCCGTTTATTCCATCCCGAATGCGGGCGCATTCAAGATGGTTGCTGATCCTGCACAGGTGAACTGGGTGCTGACCATCGCGATCCTGACTATCCTCGTCATTTACGTGACGATGGTATATGGCCCGATTGCAGCAATCCTCGTCGAGATGTTCCCAACCCGCATCCGCTATACCGGCATGTCGCTGCCTTATCATATCGGCAACGGCTGGTTCGGCGGCCTGCTTCCCGCTGGCGTGTTCGCGCTCAGCGCGGCCAAGGGCGACATCTATTACGGTCTCTGGTACCCGATCATCATCGCATCCGTAACCTTCGTGATCGGCATGCTGTTCGTGAAGGAAACCAAGGGCGTCGATCTCAACAAGGTCGATTGA > 193 BSUIS_A0649 NA major_facilitator_transporter YP_001627298.1 11 MAGQLLPIAALLASTFLMLLAGGLAGILLPLRGGMEGWSTTTIGWMGTSYSLAFTIGCIFIPHLVRRVGHVRVFSALLTLLSMALLFHALVVNPAAWMIFRGIAGFSLAGSYMIIESWLNERVTNESRGMIFSIYMIITMVGLLLGQYILPFGNAATQTLFIICAIIYASALLPTALSSAQSPNPLTQVSLDLKGLYRRSPAAVVGSFIAGIVAGTWNFLAAIYGEMNGLSTFGIATMLASAMIGGAIFQYPLGRASDFVDRRYMMILAGAIGFTLSFIMVLFHPTSPYTLYAMMFLFGSVVFPIYSLNVAHANDYADASEFVKISGGLLIVYGVGSVLGPAISGPLMDVIGANGFFVTMAIAYCIYGLHAWWRIYRLERPAISDQKTEFKFHTPDGQSTPETMQLDPRAEGTSGQAQ alpha_subgroup Brucella_suis_ATCC_23445 Brucella_suis_ATCC_23445 NC_010169 633916..635172 Setubal,J.C.,_Bowns,C.,_Boyle,S.,_Crasta,O.R.,_Czar,M.J.,_Dharmanolla,C.,_Gillespie,J.J.,_Kenyon,R.W.,_Lu,J.,_Mane,S.,_Mohapatra,S.,_Nagrani,S.,_Purkayastha,A.,_Rajasimha,H.K.,_Shallom,J.M.,_Shallom,S.,_Shukla,M.,_Snyder,E.E.,_Sobral,B.W.,_Wattam,A.R.,_Will,R.,_Williams,K.,_Yoo,H.,_Bruce,D.,_Detter,C.,_Munk,C._and_Brettin,T.S. NA 0:1257 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000911.Draft_sequencing_of_Brucella_suis_ATCC_23445_was_performed_at_theJoint_Genome_Institute_(JGI)_production_genomics_facility_in_WalnutCreek,_CA_using_a_combination_of_3_kb_and_8_kb_DNA_libraries._Tworounds_of_genome_finishing_were_performed_by_the_JGI_at_Los_AlamosNational_Laboratory,_Los_Alamos,_NM._The_completed_genomesequences_of_Brucella_canis_ATCC_23365_contain_39183_reads,achieving_an_average_of_10-fold_sequence_coverage_per_base_with_anerror_rate_less_than_1_in_100,000._Annotation_and_databasesubmission_were_carried_out_by_the_Pathosystems_ResourceIntegration_Center,_Blacksburg,_VA_(PATRIChttp://patric.vbi.vt.edu),_a_Bioinformatics_Resource_Centersupported_by_the_NIH/NIAID.COMPLETENESS:_full_length. NA 21-NOV-2011 Brucella_suis_ATCC_23445_chromosome_chromosome_I,_complete_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Brucella_suis_B0CKU8_BRUSI.gb Brucella_Meyer_and_Shaw_1920 163842277 Unpublished NA NC_010169 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1257 I genomic_DNA NA ATCC_23445 NA Brucella_suis_Huddleson_1929_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 470137 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Brucella Brucella_suis_ATCC_23445_whole_genome_shotgun_sequencing_project NA NC_010169.1 TTATTGCGCCTGCCCCGATGTGCCTTCCGCACGCGGGTCGAGCTGCATGGTTTCCGGTGTCGATTGCCCGTCGGGCGTGTGGAACTTGAACTCGGTCTTCTGGTCGCTGATTGCGGGGCGCTCCAGCCGGTAGATGCGCCACCAGGCGTGCAGCCCATAGATGCAATAGGCAATCGCCATGGTGACGAAAAATCCGTTCGCGCCGATGACATCCATCAGCGGGCCTGAAATTGCTGGCCCAAGCACGCTGCCAACCCCATAGACGATGAGCAGCCCGCCGGAAATCTTTACGAATTCGCTGGCATCGGCATAGTCGTTCGCATGGGCGACGTTCAGGCTATAGATCGGAAAGACCACCGAGCCGAACAGAAACATCATCGCATAGAGCGTATAGGGCGAGGTCGGGTGAAACAGCACCATGATGAACGACAGGGTGAAGCCGATGGCGCCTGCAAGGATCATCATATAGCGGCGGTCGACGAAATCGGAAGCGCGTCCAAGCGGGTACTGGAAGATTGCGCCGCCGATCATCGCCGAGGCAAGCATGGTGGCGATGCCGAAAGTGGAAAGCCCGTTCATCTCCCCATAGATGGCGGCAAGGAAATTCCATGTGCCTGCCACGATGCCTGCGATGAAGGAGCCGACAACTGCGGCGGGCGAGCGGCGGTAAAGCCCTTTGAGGTCCAGCGAAACCTGTGTCAGCGGGTTGGGTGACTGGGCGCTTGAAAGTGCTGTGGGCAGAAGCGCGCTGGCATAGATAATGGCGCAGATGATGAAAAGTGTCTGCGTGGCGGCATTGCCGAAGGGTAGGATATACTGCCCCAGAAGCAGCCCGACCATGGTGATGATCATATAGATCGAGAAGATCATGCCGCGCGATTCATTGGTCACGCGCTCGTTCAGCCAGCTTTCGATAATCATGTAGGAACCGGCGAGGGAGAAGCCCGCAATGCCGCGAAAAATCATCCACGCGGCCGGGTTGACCACCAGTGCATGGAACAGCAGCGCCATGGACAGCAGCGTCAGAAGCGCCGAAAAGACACGCACATGGCCGACGCGGCGCACCAGATGCGGAATGAAAATGCAGCCGATGGTGAAGGCCAGCGAATAGCTTGTCCCCATCCAGCCGATTGTCGTCGTGGACCAGCCTTCCATGCCACCGCGAAGCGGAAGGAGAATACCGGCAAGGCCGCCTGCGAGCAGCATGAGAAATGTGCTTGCCAGCAGCGCGGCTATGGGCAGAAGCTGTCCCGCCAT > 194 BamIOP4010DRAFT_1115 TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bmu:Bmul_6132_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS) metabolite/H+_symporter,_major_facilitator_superfamily_(MFS) EDT05381.1 11 MNHTESIAATSGVSPMTRAAAVLRVTSGNFIEQFDFFLFGFYATSISKIFFPSTSEFASLMLAFAVFGAGFLMRPLGAIFLGAYIDKVGRRTGLIVTLSIMASGTILIACVPGYATIGLLAPALVLLGRLLQGFSAGAELGGVSVYLAEMATPDNKGFYTSWQSASQQVAIVVAAAIGYGLNQWLSAQQIGAWGWRVPFFIGCAIVPFLFMLRRSLQETAAFEARRHHPQAREIFAMLLGNWRTVIGGMLLTAMTTTTFYLITVYTPTFGKSVLKLSTSDSLMVTLLVAASNFVWLPIGGTISDRIGRKPLLLAISMLAIFTSYPALSWLADAPSFARMLIVLLWFSFFFGMYNGAMVAALTEVMPVEVRVAGFSLAFSLATALFGGFTPAVSTYLIQVLHDKAAPGYWLSFAALCSLCATLRLYRRRAGSSNASAASSS beta_subgroup Burkholderia_ambifaria_IOP40-10 Burkholderia_ambifaria_IOP40-10 ABLC01000014 40821..42143 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Larimer,F.,_Land,M.L.,_Hauser,L.,_Tiedje,J._and_Richardson,P. NA 0:1323 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4082282Source_DNA_and_Bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376). NA 17-MAR-2008 Burkholderia_ambifaria_IOP40-10_ctg00113,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_B1FAQ6_9BURK.gb Pseudomonas_RNA_homology_group_II 170137100 Unpublished NA ABLC01000014 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1323 NA genomic_DNA NA IOP40-10 NA Burkholderia_cepacia_complex_genomovar_VII NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 396596 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Sequencing_of_the_draft_genome_and_assembly_of_Burkholderia_ambifaria_IOP40-10 NA ABLC01000014.1 ATGAACCACACAGAATCGATCGCCGCTACGTCCGGCGTTTCGCCCATGACGAGGGCCGCCGCCGTGTTGCGCGTGACCAGCGGCAATTTCATCGAACAGTTCGATTTCTTTCTGTTCGGCTTCTACGCGACATCGATCTCGAAGATCTTTTTCCCGTCCACCAGCGAGTTCGCCTCGCTGATGCTCGCCTTCGCGGTGTTCGGCGCGGGCTTTCTGATGCGTCCGCTCGGTGCGATCTTTCTCGGCGCGTATATCGACAAGGTCGGACGGCGCACCGGGCTGATCGTTACGCTGTCGATCATGGCGAGCGGCACCATTCTGATTGCCTGCGTGCCTGGGTACGCGACGATCGGCCTGCTCGCGCCGGCGCTCGTGCTGCTCGGGCGTCTGTTGCAGGGCTTCTCGGCGGGCGCGGAACTGGGCGGCGTGTCTGTCTATCTCGCGGAAATGGCGACGCCCGATAACAAGGGCTTTTACACGAGTTGGCAGTCGGCGAGCCAGCAGGTCGCCATCGTCGTGGCGGCGGCCATCGGTTACGGGCTGAACCAGTGGCTGTCCGCGCAGCAGATCGGTGCATGGGGCTGGCGCGTGCCGTTTTTCATCGGCTGCGCGATCGTGCCGTTCCTGTTCATGCTGCGCCGTTCGCTGCAGGAGACCGCAGCGTTCGAAGCGCGGCGGCATCATCCGCAGGCGCGCGAGATTTTTGCGATGCTGCTCGGCAACTGGCGCACCGTCATCGGCGGCATGCTGCTGACGGCGATGACCACCACCACCTTCTATCTCATCACCGTCTATACGCCGACCTTCGGGAAGTCGGTGCTGAAGCTGTCCACCTCCGACAGCCTGATGGTCACGCTGCTTGTGGCTGCATCGAATTTCGTCTGGCTGCCGATCGGCGGCACGATTTCCGACCGCATCGGTCGCAAGCCGCTGCTGCTCGCCATTTCCATGCTGGCGATCTTCACGTCTTATCCAGCGCTGTCCTGGCTCGCCGATGCACCGAGCTTCGCGCGCATGCTGATCGTTCTGCTGTGGTTCTCGTTCTTCTTCGGCATGTATAACGGCGCGATGGTCGCCGCGCTCACCGAAGTGATGCCGGTCGAAGTGCGCGTCGCGGGCTTCTCGCTGGCGTTCAGTCTCGCGACGGCGCTGTTCGGCGGCTTTACGCCGGCGGTATCGACGTATCTGATTCAGGTCCTGCATGACAAGGCCGCACCAGGCTACTGGCTGAGCTTCGCTGCGCTCTGCAGCTTGTGCGCGACGCTCAGGCTGTACCGTCGCCGCGCGGGCAGCAGCAACGCGTCGGCGGCATCGTCGTCCTGA > 195 BamMEX5DRAFT_4124 TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bam:Bamb_3805_shikimate_transporter metabolite/H+_symporter,_major_facilitator_superfamily_(MFS) EDT40105.1 11 MTPTFDTLAPAAGARARNQARKAAIGSFVGAVVDWYDFLLYGIVAALVFNSEFFPKISPTMGTLAAFATFGVGFLFRPLGGIVFGHFGDRLGRKRMLVLTVMLMGLSTVAIGLLPGFATIGWWAPVLLVLMRAVQGFAVGGEWGGAALMAVESAPKQKKAFYSSGVQVGYGVGLVLATGIVSILSHTLGEAAFKTWGWRLPFVFSIVLVLIGLWVRKSMDESQEFVEKVEHGNRKLRLPVLEALTRHPKAFLLIVALRLAELFTMYIVTAFALSYSTSNLGLSRDLFLNIGLLVGAVSCVTIPCFAWLADRFGLRRIYLIGAVIGLVSAVPFFVALESRSIAWIVVFSILLANAAHDMVVSVQQPLFTELFGAEYRYSGAGVGYQFASVVGGGFTPFIAVALVSMAGGSWHFVAAYLAVGCLISLVVAARMRAAQ beta_subgroup Burkholderia_ambifaria_MEX-5 Burkholderia_ambifaria_MEX-5 ABLK01000146 10737..12044 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Larimer,F.,_Land,M.L.,_Hauser,L.,_Tiedje,J._and_Richardson,P. NA 0:1308 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4082280Source_DNA_and_Bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)We_are_labeling_this_project_Permanent_Draft._At_this_time_thereare_no_further_plans_to_do_additional_sequencing_for_this_project. NA 27-MAR-2008 Burkholderia_ambifaria_MEX-5_ctg00547,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_B1T8K8_9BURK.gb Pseudomonas_RNA_homology_group_II 171095083 Unpublished NA ABLK01000146 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1308 NA genomic_DNA NA MEX-5 NA Burkholderia_cepacia_complex_genomovar_VII NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 396597 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Sequencing_of_the_draft_genome_and_assembly_of_Burkholderia_ambifaria_MEX-5 NA ABLK01000146.1 ATGACACCCACCTTCGACACCCTCGCCCCCGCCGCTGGCGCCCGCGCGCGCAACCAGGCCCGCAAGGCCGCGATAGGCAGCTTTGTCGGCGCCGTCGTCGACTGGTACGACTTCCTGCTGTACGGGATCGTCGCCGCGCTCGTATTCAATTCCGAATTCTTCCCGAAGATCAGCCCGACCATGGGCACGCTCGCGGCGTTCGCGACCTTCGGCGTCGGCTTTCTGTTCCGTCCGCTCGGCGGGATCGTGTTCGGCCATTTCGGCGACCGGCTCGGCCGCAAGCGGATGCTCGTGCTGACCGTGATGCTGATGGGGCTGTCGACCGTCGCGATCGGCCTGCTGCCGGGTTTCGCGACGATCGGCTGGTGGGCGCCCGTGCTGCTGGTGCTGATGCGCGCGGTCCAGGGCTTCGCGGTCGGCGGCGAATGGGGCGGCGCGGCGCTGATGGCCGTCGAGAGCGCGCCGAAGCAGAAGAAGGCGTTCTACAGCAGCGGCGTGCAGGTCGGCTACGGCGTCGGGCTCGTGCTGGCGACGGGGATCGTGTCGATCCTGAGCCATACGCTCGGCGAGGCCGCGTTCAAGACGTGGGGCTGGCGCCTGCCGTTCGTGTTCAGCATCGTGCTGGTGCTGATCGGGCTGTGGGTCCGCAAGAGCATGGACGAGTCGCAGGAGTTCGTCGAGAAGGTCGAGCACGGTAACCGCAAGCTGCGCCTGCCGGTGCTCGAAGCGCTGACGCGCCATCCGAAGGCGTTCCTGCTGATCGTCGCGCTGCGGCTCGCCGAGCTGTTCACGATGTATATCGTCACGGCATTCGCGCTCAGCTATTCGACGTCGAACCTGGGCCTGTCGCGCGACCTGTTCCTGAACATCGGCCTGCTGGTCGGCGCGGTGAGCTGCGTGACGATCCCGTGCTTCGCCTGGCTCGCCGACCGCTTCGGCCTGCGCCGCATCTACCTGATCGGCGCGGTGATCGGCCTCGTGTCGGCGGTGCCGTTCTTCGTCGCGCTGGAGTCGCGTTCGATCGCGTGGATCGTCGTGTTCTCGATCCTGTTGGCCAATGCCGCGCACGACATGGTCGTGAGTGTCCAGCAGCCGCTCTTCACCGAGCTGTTCGGCGCGGAATACCGCTACAGCGGCGCAGGCGTCGGTTATCAGTTCGCGAGTGTGGTCGGCGGCGGGTTCACGCCGTTCATCGCGGTGGCGCTGGTCAGCATGGCCGGCGGTTCGTGGCACTTCGTCGCCGCTTATCTCGCGGTGGGCTGCCTGATCTCGCTGGTGGTCGCCGCGCGGATGCGGGCGGCGCAATGA > 196 BamMEX5DRAFT_4470 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bch:Bcen2424_0717_major_facilitator_superfamily_MFS_1 major_facilitator_superfamily_MFS_1 EDT39749.1 11 MHAVTQSRSIASSPRVWRAVVAASIGNALEWFDLVVYGFFAVTISKLFFPAGNDTVSLLLTLGTFGVSFFMRPLGAIVLGAYADRAGRKAALTLSILLMMAGTLVIAVLPTYRTIGVAAPLILVAARLMQGFSAGGEFGSATAFLAEHVPGRRGFFASWQVASQGLTTLLAAGFGTVLNAQLTADQMAAWGWRIPFFFGLLLGPVAYYIRSKVDETPEFLAAESTTSPLRDTFASHKARLVAAMGVVVLGTVATYLVLFMPTYGVKQLGLAPSAAFAAILVVGVIQMAFAPLVGHWSDRYGRVRVMIAPALGILVLIYPAFAYLVAHPGFGTLIALQVLLAFLMTGYFAALPGLLSEVFPVQTRTTGMSLAYNVAVTIFGGFGPFIIAWLIRETGMKTAPSFYLMFAAVLSLAALVVLRRRFGFR beta_subgroup Burkholderia_ambifaria_MEX-5 Burkholderia_ambifaria_MEX-5 ABLK01000168 6558..7835 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Larimer,F.,_Land,M.L.,_Hauser,L.,_Tiedje,J._and_Richardson,P. NA 0:1278 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4082280Source_DNA_and_Bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)We_are_labeling_this_project_Permanent_Draft._At_this_time_thereare_no_further_plans_to_do_additional_sequencing_for_this_project. NA 27-MAR-2008 Burkholderia_ambifaria_MEX-5_ctg00917,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_B1T9K4_9BURK.gb Pseudomonas_RNA_homology_group_II 171094699 Unpublished NA ABLK01000168 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1278 NA genomic_DNA NA MEX-5 NA Burkholderia_cepacia_complex_genomovar_VII NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 396597 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Sequencing_of_the_draft_genome_and_assembly_of_Burkholderia_ambifaria_MEX-5 NA ABLK01000168.1 TCACCGGAACCCGAACCGCCGCCGCAGCACGACCAGCGCCGCGAGGCTCAGCACGGCCGCGAACATCAGGTAGAAGCTCGGCGCGGTCTTCATCCCGGTCTCGCGGATCAGCCACGCGATGATGAACGGCCCGAAGCCGCCGAAGATCGTCACCGCGACGTTATACGCGAGCGACATCCCGGTCGTGCGCGTCTGCACCGGAAACACCTCGGACAGCAGGCCCGGCAACGCCGCGAAATAGCCGGTCATCAGGAACGCGAGCAGCACCTGCAGCGCGATCAGCGTGCCGAAGCCCGGATGCGCGACCAGGTACGCGAACGCCGGATAGATCAGCACGAGAATGCCGAGGGCCGGCGCGATCATCACGCGCACGCGGCCGTAGCGATCCGACCAGTGGCCGACGAGCGGCGCGAACGCCATCTGGATCACGCCGACGACGAGAATCGCCGCGAACGCGGCCGACGGCGCGAGGCCGAGCTGCTTCACACCGTAGGTCGGCATGAACAGCACGAGATAGGTCGCGACGGTGCCGAGCACGACCACGCCCATCGCGGCGACGAGCCGCGCCTTGTGCGACGCGAACGTGTCGCGCAACGGACTCGTGGTGCTTTCGGCCGCGAGGAATTCGGGCGTCTCGTCGACCTTCGAGCGGATGTAGTACGCGACGGGCCCGAGCAGCAGCCCGAAGAAGAACGGAATGCGCCAGCCCCACGCGGCCATCTGGTCGGCCGTGAGTTGCGCGTTCAGCACGGTGCCGAAACCGGCGGCAAGCAATGTCGTGAGGCCCTGGCTCGCGACCTGCCAGCTCGCGAAGAAGCCGCGCCGGCCCGGCACGTGCTCGGCCAGGAACGCGGTCGCGCTGCCGAATTCGCCGCCCGCCGAGAAACCCTGCATCAGCCGTGCGGCGACGAGGATCAGCGGCGCCGCGACGCCGATCGTCCGGTAGGTCGGCAGCACCGCGATGACGAGCGTGCCGGCCATCATCAGCAGGATCGACAGCGTGAGTGCGGCCTTGCGGCCCGCGCGGTCGGCGTACGCGCCGAGCACGATCGCGCCGAGCGGACGCATGAAGAACGACACGCCGAACGTGCCGAGCGTGAGCAGCAGCGACACGGTGTCGTTGCCGGCCGGGAAGAACAGCTTCGAGATCGTCACCGCGAAGAAGCCGTAGACGACGAGGTCGAACCACTCGAGCGCGTTGCCGATCGACGCGGCGACCACCGCGCGCCACACGCGCGGCGACGAGGCAATGGAGCGGGACTGCGTGACGGCGTGCAT > 197 BamMC406_2957 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bam:Bamb_3091_general_substrate_transporter general_substrate_transporter YP_001809649.1 11 MATIANSTKTARPERALNRRAVVAAVIGNALEWYDFTVFGFMTVVIAELFFPTSSEYSSLLLTTATFGVAFFMRPIGGIVFGLYADRAGRKAALSLVILLMTAGIFLLAIAPPYAAIGIGGPLLIVLGRLLQGFSAGGEFGSATALLIEAAPFSKRGFYGSWQMASQAAALLIGALVGAAITRGLSYDALRSWGWRVPFILGLVIGPIGFYIRRHLADSEAFLHAQQSARRATLGEVFTRYPREVLCGLGSVIALTVTIYVLISYLPTFAVKQLKLPYAESFYAVIIGNLLLMVLSPIAGAWSDRIGRKGLSLWSLVLTLALMYPLFAWLDAAPSIGRLIAVQAVLSVTLAGYYGPFGAMIAELFPANVRSTGLSIAYNVAVMLFGGFGQFIVTWLIKTTGTPLAPTYYVMAGLALSIVAVAFVPARNADLDAPD beta_subgroup Burkholderia_ambifaria_MC40-6 Burkholderia_ambifaria_MC40-6 NC_010551 3278920..3280227 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Lang,D.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Ramette,A.,_Konstantinidis,K.,_Tiedje,J._and_Richardson,P. NA 0:1308 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001025.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002673Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_ambifaria_MC40-6_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_B1YPC8_BURA4.gb Pseudomonas_RNA_homology_group_II 172059067 Unpublished NA NC_010551 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1308 1 genomic_DNA NA MC40-6 NA Burkholderia_cepacia_complex_genomovar_VII NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398577 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome1_of_Burkholderia_ambifaria_MC40-6 NA NC_010551.1 TCAGTCCGGCGCGTCGAGATCCGCGTTGCGCGCGGGCACGAACGCGACGGCGACGATCGACAGCGCGAGCCCCGCCATCACGTAGTAGGTGGGCGCGAGTGGCGTGCCCGTCGTCTTGATCAGCCACGTGACGATGAACTGCCCGAACCCGCCGAACAGCATCACCGCGACGTTGTACGCGATCGACAGCCCGGTCGAGCGCACGTTGGCCGGGAACAGCTCGGCGATCATCGCGCCGAACGGCCCGTAGTAGCCCGCGAGCGTCACCGACAGCACGGCCTGCACCGCGATCAGCCGCCCGATGCTCGGCGCGGCGTCGAGCCACGCGAACAGCGGGTACATCAGCGCGAGCGTCAGCACGAGCGACCACAGCGACAGCCCCTTGCGGCCGATGCGGTCCGACCACGCGCCCGCGATCGGCGACAGCACCATCAGCAACAGATTGCCGATGATCACCGCGTAGAACGACTCCGCATACGGCAGCTTCAGCTGCTTCACCGCGAAGGTCGGCAGATAACTGATCAGCACGTAGATCGTGACCGTCAGCGCGATCACCGAGCCGAGCCCGCACAGCACCTCGCGCGGATAGCGCGTGAACACTTCGCCGAGCGTCGCGCGGCGCGCGCTTTGCTGTGCATGCAGGAATGCTTCGGAATCGGCGAGATGACGGCGGATATAGAAACCGATCGGACCGATCACGAGCCCGAGGATGAACGGCACGCGCCAGCCCCAGCTGCGCAGCGCGTCGTACGACAGCCCGCGCGTGATCGCCGCGCCGACCAGTGCGCCGATCAGCAGCGCGGCCGCCTGGCTCGCCATCTGCCAGCTGCCGTAGAAACCGCGTTTCGAGAACGGCGCGGCTTCGATCAGCAGCGCGGTCGCGCTGCCGAATTCGCCGCCGGCCGAGAAACCCTGCAGCAGGCGGCCGAGCACGATCAGGAGCGGGCCGCCGATGCCGATCGCCGCATAGGGCGGTGCGATCGCGAGCAGGAAGATGCCGGCCGTCATCAGCAGGATCACGAGCGACAGCGCGGCCTTGCGGCCCGCGCGGTCCGCATAGAGCCCGAACACGATGCCGCCGATCGGGCGCATGAAGAATGCGACGCCGAACGTCGCGGTGGTCAGCAGCAGCGAAGAATATTCACTGGAAGTCGGGAAGAACAGCTCGGCGATCACGACCGTCATGAAGCCGAACACCGTGAAGTCGTACCACTCGAGCGCATTGCCGATCACTGCCGCCACGACCGCGCGCCGGTTCAGCGCACGCTCGGGCCGCGCCGTTTTCGTTGAATTCGCAATCGTCGCCAT > 198 BamMC406_0632 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bam:Bamb_0608_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_001807345.1 11 MHAVTQSSSIASSQRVWRAVVAASIGNALEWFDLVVYGFFAVTISKLFFPAGNDTVSLLLTLGTFGVSFFMRPLGAIVLGAYADRAGRKAALTLSILLMMAGTLVIAVLPTYGTIGVAAPLILVAARLMQGFSAGGEFGSATAFLAEHVPGRRGFFASWQVASQGLTTLLAAGFGTVLNAQLTADQMAAWGWRIPFFFGLLLGPVAYYIRSKVDETPEFLAAESTATPLRDTFASHKARLVAAMGVVVLGTVATYLVLFMPTYGVKQLGLAPSAAFAAILVVGVIQMAFAPLVGHWSDRYGRVRVMIAPALGILVLIYPAFAYLVAHPGFGTLIALQVLLAFLMTGYFAALPGLLSEVFPVQTRTTGMSLAYNVAVTIFGGFGPFIIAWLIRATGMKTAPSFYLMFAAVLSLAALFVLRRRFGFR beta_subgroup Burkholderia_ambifaria_MC40-6 Burkholderia_ambifaria_MC40-6 NC_010551 709997..711274 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Lang,D.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Ramette,A.,_Konstantinidis,K.,_Tiedje,J._and_Richardson,P. NA 0:1278 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001025.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002673Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_ambifaria_MC40-6_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_B1YTG4_BURA4.gb Pseudomonas_RNA_homology_group_II 172059067 Unpublished NA NC_010551 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1278 1 genomic_DNA NA MC40-6 NA Burkholderia_cepacia_complex_genomovar_VII NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398577 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome1_of_Burkholderia_ambifaria_MC40-6 NA NC_010551.1 ATGCACGCCGTCACGCAGTCCAGCTCCATTGCCTCGTCGCAGCGCGTGTGGCGCGCGGTGGTCGCCGCGTCGATCGGCAACGCGCTCGAGTGGTTCGACCTCGTCGTCTACGGCTTCTTCGCGGTCACGATCTCGAAGCTGTTCTTTCCGGCCGGCAACGACACCGTGTCGCTGCTGCTCACGCTCGGCACGTTCGGCGTGTCGTTCTTCATGCGTCCGCTCGGCGCGATCGTGCTCGGCGCTTATGCCGACCGCGCGGGCCGCAAGGCCGCCCTCACGCTGTCGATCCTGTTGATGATGGCCGGCACGCTCGTCATCGCGGTGCTGCCGACCTACGGGACGATCGGCGTCGCGGCGCCGCTGATCCTCGTCGCCGCACGGCTGATGCAGGGTTTCTCGGCGGGCGGCGAATTCGGCAGCGCGACCGCGTTCCTGGCCGAGCACGTGCCGGGCCGGCGCGGCTTCTTCGCGAGCTGGCAGGTCGCGAGCCAGGGCCTCACGACACTGCTTGCCGCCGGTTTCGGCACCGTGCTGAACGCGCAGCTCACGGCCGACCAGATGGCCGCGTGGGGCTGGCGCATTCCGTTCTTCTTCGGGTTGCTGCTCGGGCCCGTCGCGTACTACATCCGCTCGAAGGTCGACGAGACGCCCGAATTCCTCGCGGCCGAAAGCACCGCGACCCCGCTGCGCGACACGTTCGCGTCGCACAAGGCGCGGCTCGTCGCCGCGATGGGCGTGGTCGTGCTCGGCACCGTCGCGACCTATCTCGTGCTGTTCATGCCGACCTACGGCGTGAAGCAGCTCGGCCTCGCGCCGTCGGCCGCGTTCGCGGCGATCCTCGTCGTCGGGGTGATCCAGATGGCGTTCGCGCCGCTCGTCGGCCACTGGTCGGATCGCTACGGCCGCGTGCGCGTGATGATCGCGCCGGCGCTCGGCATTCTCGTGCTGATCTATCCGGCGTTCGCGTACCTGGTCGCGCACCCGGGCTTCGGCACGCTGATCGCGCTGCAGGTGCTGCTCGCGTTCCTGATGACCGGTTATTTCGCGGCGTTGCCGGGCCTGCTGTCGGAAGTGTTTCCGGTGCAGACACGCACGACCGGGATGTCGCTCGCGTATAACGTCGCGGTGACGATCTTCGGCGGCTTCGGGCCGTTCATCATCGCGTGGCTGATCCGCGCGACCGGGATGAAGACCGCGCCGAGCTTCTACCTGATGTTCGCGGCCGTGCTGAGCCTCGCGGCGCTGTTCGTGCTGCGGCGGCGGTTCGGATTTCGGTGA > 199 BamMC406_0863 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bam:Bamb_0851_general_substrate_transporter general_substrate_transporter YP_001807570.1 11 MSASPPAVAHATGSAGAAVSHRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPIGSFLFGHFGDRIGRKSTLVASLIVMGVSTTAIGFVPGYDTIGALAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPQGKRGWFGMFPQLGPSVGFLMSNGLFFALALSLSDEQFRSWGWRIPFLVSAVLVAVGLYVRLKITETPAFQAALDRNERVRVPVATLVSQHWRPTLLGALAMVVCYTLFYISTVFSLSYGVATLHIPRQSFLGLLCFAVVFMGLATPLSAWASDRFGRKPVLIVGAIAALLSGFAMEPLLGSGSMPLVALFLTLELFLMGVTFAPMGALLPELFPTNVRYTGAGVAYNLGGILGASIAPYIAQLLAAHGGLSWVGGYVSVAAAISLIGVLLMRETRDASLV beta_subgroup Burkholderia_ambifaria_MC40-6 Burkholderia_ambifaria_MC40-6 NC_010551 951169..952482 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Lang,D.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Ramette,A.,_Konstantinidis,K.,_Tiedje,J._and_Richardson,P. NA 0:1314 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001025.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002673Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_ambifaria_MC40-6_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_B1YUM7_BURA4.gb Pseudomonas_RNA_homology_group_II 172059067 Unpublished NA NC_010551 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1314 1 genomic_DNA NA MC40-6 NA Burkholderia_cepacia_complex_genomovar_VII NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398577 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome1_of_Burkholderia_ambifaria_MC40-6 NA NC_010551.1 TCAGACGAGCGATGCGTCGCGGGTCTCGCGCATCAGCAGCACGCCGATCAGGCTGATTGCCGCCGCGACCGACACGTACCCGCCGACCCACGACAGGCCGCCGTGCGCAGCGAGCAGCTGCGCGATGTACGGCGCGATCGACGCACCGAGGATCCCGCCGAGGTTGTACGCGACGCCCGCGCCCGTATAGCGGACGTTGGTCGGGAACAGCTCGGGCAGCAGCGCGCCCATCGGCGCGAACGTCACGCCCATCAGAAACAGCTCGAGCGTCAGGAACAGCGCGACGAGCGGCATCGAACCGCTGCCGAGCAGCGGCTCCATCGCGAAGCCGGACAGCAGCGCGGCGATCGCGCCGACGATCAGCACCGGCTTGCGCCCGAAGCGATCCGACGCCCATGCCGATAGCGGCGTCGCGAGCCCCATGAACACCACCGCGAAGCACAGCAGGCCAAGGAAGCTCTGGCGCGGAATATGCAGCGTCGCCACGCCGTACGACAGCGAGAACACCGTTGAGATATAGAACAGCGTGTAGCAGACCACCATCGCGAGCGCGCCGAGCAGCGTGGGCCGCCAGTGTTGCGACACGAGCGTCGCGACCGGCACACGCACGCGCTCGTTGCGATCGAGCGCGGCCTGGAACGCCGGCGTCTCGGTGATCTTCAGTCGAACGTAAAGGCCCACCGCGACGAGCACCGCGCTGACGAGGAACGGGATGCGCCAGCCCCAGCTGCGGAATTGTTCGTCGGACAGCGACAGCGCGAGCGCGAAGAACAGCCCGTTCGACATCAGGAAGCCGACCGACGGCCCCAGTTGCGGGAACATCCCGAACCAGCCGCGCTTGCCTTGCGGCGCGTGCTCGGTCGCGAGCAGCGCCGCGCCGCCCCATTCTCCGCCGAGGCCGATCCCCTGACCGAAGCGCAGCACGCACAGCAGCACCGGCGCGAGCGCGCCGATCGTGTCGTAGCCGGGCACGAAGCCGATCGCGGTGGTGGACACGCCCATGACGATCAGCGACGCGACGAGCGTCGATTTGCGGCCGATGCGGTCGCCGAAGTGGCCGAACAGGAACGAGCCGATCGGCCGTGCGATGAACGCGATGCCGAACGTGACGAACGCAGACAGCGCCTGTGCGGTGGCCGAGCCGTGCGGAAAGAACACCGGACCGATGACGAGCGCCGCGGCGGTCGCGTACACGTAGAAGTCGTAGAACTCGATCGCGGTGCCGATGAAGCTCGCGAACACGATGCGCCGGTGGCTGACGGCGGCGCCGGCCGAACCGGTTGCGTGTGCAACGGCCGGGGGAGATGCGGACAT > 200 BamMC406_2576 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bam:Bamb_2702_major_facilitator_superfamily_MFS_1 general_substrate_transporter YP_001809269.1 11 MATLGGQISHSPMTAEEKKVIFASSLGTVFEWYDFYLAGSLAAYISKSFFSGVNPTAAFIFTLLGFAAGFAVRPFGAIVFGRLGDLVGRKHTFLVTIVIMGISTFVVGFLPGYTTIGIAAPVIFIAMRLLQGLALGGEYGGAATYVAEHAPANRRGFYTAWIQTTATLGLFLSLLVILGVRTFIGEEAFGNWGWRVPFVASILLLAVSVWIRLQLNESPVFLRIKAEGKTSKAPLTEAFGQWKNLKIVILALVGLTAGQAVVWYTGQFYALFFLTQTLKVDGASANILIAIALLIGTPFFLFFGSLSDRIGRKPIILAGCLIAALTYFPLFKALTHYANPQLELATQKAPISVIADPATCSFQFNPVGTSKFTSSCDIVKSALAKAGLNYENVAAPAGSTAQIKVGDTVIPAYDGKAPDAKAQGAAFDKTLASTLKGAGYPAKADPAQLNWPMTIVILTILVIYVTMVYGPIAAMLVEMFPTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAAKGNIYSGLWYPIVIALATFVIGLLFVKETKDSNIYAQD beta_subgroup Burkholderia_ambifaria_MC40-6 Burkholderia_ambifaria_MC40-6 NC_010551 2859930..2861588 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Lang,D.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Ramette,A.,_Konstantinidis,K.,_Tiedje,J._and_Richardson,P. NA 0:1659 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001025.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002673Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_ambifaria_MC40-6_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_B1YVZ2_BURA4.gb Pseudomonas_RNA_homology_group_II 172059067 Unpublished NA NC_010551 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1659 1 genomic_DNA NA MC40-6 NA Burkholderia_cepacia_complex_genomovar_VII NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398577 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome1_of_Burkholderia_ambifaria_MC40-6 NA NC_010551.1 ATGGCAACCTTAGGCGGGCAAATTTCGCACTCGCCGATGACGGCCGAAGAAAAGAAGGTGATCTTCGCGTCGTCGCTCGGCACCGTGTTCGAGTGGTACGACTTTTACCTGGCCGGGTCACTCGCGGCCTACATCAGCAAGAGCTTCTTCTCCGGGGTCAATCCGACCGCCGCCTTCATCTTCACGCTGCTCGGCTTCGCGGCCGGCTTCGCCGTGCGGCCGTTCGGCGCGATCGTGTTCGGCCGGCTCGGCGATCTCGTCGGCCGCAAGCACACGTTCCTTGTGACGATCGTGATCATGGGCATCTCGACCTTCGTGGTCGGCTTCCTGCCCGGCTACACGACGATCGGCATCGCGGCGCCCGTGATCTTCATCGCGATGCGGCTGCTGCAGGGCCTCGCGCTCGGCGGCGAGTACGGCGGCGCGGCGACCTACGTCGCCGAGCATGCGCCGGCGAACCGTCGCGGCTTCTACACCGCGTGGATCCAGACGACCGCGACGCTCGGCCTGTTCCTGTCGCTGCTCGTGATCCTCGGCGTACGCACGTTCATCGGCGAGGAAGCATTCGGCAACTGGGGCTGGCGCGTGCCGTTCGTCGCGTCGATCCTGCTGCTCGCGGTGTCGGTGTGGATCCGGTTGCAGCTGAATGAATCGCCGGTGTTCCTGCGCATCAAGGCCGAGGGCAAGACGTCGAAGGCGCCGCTGACCGAAGCGTTCGGCCAGTGGAAGAACCTGAAGATCGTGATCCTCGCGCTCGTCGGCCTGACCGCCGGCCAGGCCGTCGTCTGGTACACGGGGCAGTTCTACGCGCTGTTCTTCCTCACGCAGACGCTGAAGGTCGACGGTGCCAGCGCGAACATCCTGATCGCGATCGCGCTCCTGATCGGCACGCCGTTCTTCCTGTTCTTCGGCTCGCTGTCGGACCGGATCGGCCGCAAGCCGATCATTCTCGCCGGCTGCCTGATCGCGGCGCTCACCTACTTCCCGCTGTTCAAGGCGCTCACGCACTACGCGAACCCGCAGCTCGAACTCGCGACGCAGAAGGCACCGATCTCGGTCATCGCCGATCCGGCCACCTGCTCGTTCCAGTTCAACCCGGTGGGCACGTCGAAGTTCACGAGCTCGTGCGACATCGTGAAGAGCGCGCTCGCGAAGGCCGGCCTGAACTACGAGAACGTCGCGGCGCCGGCAGGCTCGACCGCGCAGATCAAGGTGGGTGACACGGTGATCCCGGCCTATGACGGCAAGGCGCCCGATGCGAAGGCGCAGGGCGCGGCGTTCGACAAGACGCTCGCGTCGACGCTGAAGGGCGCCGGCTATCCGGCCAAGGCCGACCCGGCGCAGCTCAACTGGCCGATGACGATCGTGATACTGACGATCCTCGTGATCTACGTGACGATGGTCTACGGCCCGATCGCCGCGATGCTGGTCGAGATGTTCCCGACGCGGATCCGCTACACGTCGATGTCGCTGCCCTATCACATCGGTAACGGCTGGTTCGGCGGCTTCCTGCCGGCGACCGCGTTCGCGATCGTCGCGGCGAAGGGCAACATCTATTCGGGGCTCTGGTATCCGATCGTGATCGCGCTGGCCACGTTCGTGATCGGTCTGCTGTTCGTCAAGGAGACGAAGGACTCGAACATCTACGCGCAGGATTGA > 201 BamMC406_5869 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bam:Bamb_6108_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_001815860.1 11 MTGQVGEAVSPGSAAAVQDTASKRELKRVVAASMVGSVAEWYEFFLYGTASALVFGTHFFKKTGNPIDGLLAAFALYAVGFAARPIGGLVFGYYGDKFGRKYLLQVSLIVVGITTFLMGCLPTFDAIGYWAPVLLVSLRLIQGFAFGGEWGGAILLVSEHSPDNRRGYWASWPQAGVPAGNLVATIILLVLSSSLSEADFLAWGWRAAFWFSAVVVLIGFWIRRKVDDAPIFKEAQARRAQKQEKQLGVVHVLKYHWQQVLIGIGARFAENILYYMVVTFSLTYLKLVVGADTTRILKLMFAANAIHFFFIPLMGLLSDFVGRKPVYLTGAVLTAGWGFVAFPMMDTGNDWIIMAAIVLGLFIESMTYSPYSALMTEMFPTNVRYTALSLCYQVAPLMAGSLAPLIGLSLLERYHSSTPIALYLVAAAVISIVCVGVAKETRGKSLRDVDAEASRRTHA beta_subgroup Burkholderia_ambifaria_MC40-6 Burkholderia_ambifaria_MC40-6 NC_010557 401017..402396 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Lang,D.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Ramette,A.,_Konstantinidis,K.,_Tiedje,J._and_Richardson,P. NA 0:1380 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001027.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002673Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_ambifaria_MC40-6_chromosome_chromosome_3,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_B1Z3J4_BURA4.gb Pseudomonas_RNA_homology_group_II 172064800 Unpublished NA NC_010557 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1380 3 genomic_DNA NA MC40-6 NA Burkholderia_cepacia_complex_genomovar_VII NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398577 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome3_of_Burkholderia_ambifaria_MC40-6 NA NC_010557.1 ATGACAGGTCAGGTCGGCGAGGCAGTCTCGCCCGGTAGTGCAGCAGCCGTGCAGGACACGGCGTCGAAACGGGAATTGAAGCGGGTCGTCGCGGCGTCGATGGTCGGATCGGTGGCGGAGTGGTACGAGTTCTTCCTGTATGGAACGGCGTCGGCGCTGGTGTTCGGCACGCATTTCTTCAAGAAGACCGGCAATCCGATCGACGGCCTGCTCGCCGCGTTCGCGCTGTATGCGGTGGGGTTCGCCGCGCGGCCGATCGGCGGGCTGGTGTTCGGCTACTACGGCGACAAGTTCGGCCGCAAGTACCTGCTGCAGGTCAGCCTGATCGTGGTCGGCATCACGACCTTCCTGATGGGCTGCCTGCCGACCTTCGATGCGATCGGCTACTGGGCGCCGGTGCTGCTGGTGTCGCTGCGGCTGATTCAGGGCTTCGCGTTCGGCGGCGAGTGGGGCGGCGCGATCCTGCTGGTCAGCGAACACAGCCCGGACAACCGTCGCGGCTACTGGGCCAGCTGGCCGCAAGCCGGCGTGCCGGCCGGCAACCTCGTCGCGACCATCATCCTGCTGGTGCTGTCGAGTTCGCTGTCCGAGGCCGACTTTTTGGCATGGGGCTGGCGCGCGGCGTTCTGGTTCTCGGCGGTGGTCGTGCTGATCGGCTTCTGGATTCGCCGCAAGGTCGACGATGCGCCGATCTTCAAGGAAGCGCAGGCGCGCCGCGCACAGAAGCAGGAAAAGCAGCTTGGCGTGGTTCACGTGCTGAAGTATCACTGGCAGCAGGTGCTGATCGGCATTGGCGCGCGGTTCGCCGAGAACATCCTGTACTACATGGTCGTCACGTTTTCGTTGACCTACCTGAAGCTGGTGGTCGGCGCCGACACCACGCGGATCCTGAAGCTGATGTTCGCGGCCAACGCGATCCACTTCTTCTTCATTCCGCTGATGGGGCTGCTATCGGACTTCGTCGGCCGCAAGCCCGTGTATCTGACGGGCGCGGTGCTGACCGCCGGCTGGGGCTTCGTCGCGTTCCCGATGATGGATACCGGCAACGACTGGATCATCATGGCCGCGATCGTGCTCGGTCTGTTCATCGAATCGATGACGTACTCGCCGTACTCGGCGCTGATGACCGAGATGTTCCCGACCAACGTGCGCTATACCGCGCTGTCGCTGTGCTACCAGGTCGCGCCGCTGATGGCCGGCTCGCTCGCGCCGCTGATCGGGCTGTCGCTGCTCGAGCGCTATCACTCGTCGACGCCGATCGCGCTGTACCTGGTCGCCGCGGCCGTGATCTCGATCGTGTGCGTGGGTGTCGCGAAGGAAACGCGCGGCAAGTCGCTGCGCGATGTGGATGCGGAGGCGAGTCGGCGTACGCATGCGTGA > 202 BamMC406_5889 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bam:Bamb_6155_general_substrate_transporter general_substrate_transporter YP_001815879.1 11 MSSSQAHPAKARSSRKALKLDDITIVDPAVLKRAVGAMAFGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSAQLLATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAATMIMMAVGTFAIGLIPSYASIGIMAPVLLLVARLVQGFSTGGEYGGAATFIAEFSTDKRRGFMGSFLEFGTLIGYTLGAATVAVLSATLSQDALLSWGWRVPFFIAGPLGLVGLYVRLKLEETPAFKKEAESREADERSRPKQSFGTLLVEQWKPLLQCVGLVLIFNVTDYMALSYLPNYLSATLHFNETHGLFMVLIVMVLMMPMTLYAGHLSDRVGRKPVMMAGCVGLLVLSVPALLLIRTGGMLPVFGGMLIYGTLLSTFTGVMPSALPALFPTRIRYGALAIGFNVSVSLFGGTTPLVTAWLVDRTGDLMMPAYYLMGASFIGIVSVLALRETARRPLPGSAPCVASRAEAQDLIRRGADEGRVRDRKFTPIGERA beta_subgroup Burkholderia_ambifaria_MC40-6 Burkholderia_ambifaria_MC40-6 NC_010557 423331..424800 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Lang,D.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Ramette,A.,_Konstantinidis,K.,_Tiedje,J._and_Richardson,P. NA 0:1470 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001027.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002673Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_ambifaria_MC40-6_chromosome_chromosome_3,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_B1Z3L3_BURA4.gb Pseudomonas_RNA_homology_group_II 172064800 Unpublished NA NC_010557 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1470 3 genomic_DNA NA MC40-6 NA Burkholderia_cepacia_complex_genomovar_VII NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398577 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome3_of_Burkholderia_ambifaria_MC40-6 NA NC_010557.1 TTACGCGCGTTCACCGATCGGCGTGAACTTGCGGTCGCGCACGCGGCCTTCGTCGGCGCCGCGGCGAATCAGGTCCTGCGCTTCCGCACGGCTCGCGACGCATGGAGCGGAACCGGGCAGCGGCCGCCGTGCGGTTTCGCGCAGCGCTAGCACCGACACGATGCCGATGAACGACGCACCCATCAGGTAGTAGGCCGGCATCATCAGGTCGCCAGTGCGATCGACGAGCCATGCGGTGACGAGCGGCGTCGTGCCGCCGAACAGCGACACCGATACGTTGAAGCCGATCGCGAGCGCGCCGTAGCGGATCCGCGTCGGGAACAGCGCGGGCAGCGCGGACGGCATCACGCCGGTGAAGGTCGACAGCAGCGTGCCGTAGATCAGCATCCCGCCGAACACGGGCAGCATCCCGCCCGTGCGGATCAGCAGCAGCGCCGGCACCGACAGCACGAGCAGGCCGACGCAGCCGGCCATCATCACCGGCTTGCGGCCGACGCGGTCCGACAGATGGCCCGCGTAGAGCGTCATCGGCATCATCAGCACCATCACGATCAGCACCATGAAGAGGCCGTGCGTCTCGTTGAAGTGCAGCGTCGCCGACAGGTAGTTCGGCAGGTACGACAGCGCCATGTAGTCGGTCACGTTGAAGATCAGCACCAGGCCGACGCACTGGAGCAGCGGCTTCCACTGTTCGACGAGCAGCGTGCCGAACGACTGCTTCGGGCGCGAGCGCTCGTCCGCTTCGCGCGATTCGGCTTCCTTCTTGAACGCGGGCGTTTCCTCGAGCTTGAGCCGCACGTACAGGCCGACGAGGCCGAGCGGCCCGGCGATGAAGAACGGCACGCGCCAGCCCCACGACAGCAGCGCATCCTGCGACAGCGTGGCCGAGAGCACCGCGACGGTGGCCGCGCCGAGCGTGTAGCCGATCAGCGTGCCGAACTCGAGGAAGCTGCCCATGAAGCCGCGGCGCTTGTCGGTCGAGAACTCGGCGATGAAGGTGGCGGCGCCGCCGTATTCGCCGCCGGTCGAGAAGCCCTGCACGAGGCGGGCGACGAGCAGCAGCACGGGCGCCATGATGCCGATCGACGCGTAGCTGGGGATCAGACCGATCGCGAAGGTGCCGACGGCCATCATGATCATCGTGGCGGCGAGCACGCGCTGGCGGCCGATGCGGTCGCCCAGCGGGCCGAACACCATGCCGCCGAGCGGGCGCACGAGGAACGCGGCCGCGAACGTGCCGAAGGTCGCGAGCAGCTGCGCGGACGGGCTGCTCGACGGGAAGAACACCTTGCCGAGCGTGACGGCGATATAGCTGTAGACGCCGAAGTCGAACCATTCCATCGCGTTGCCGAACGCCATGGCCCCGACCGCGCGTTTCAGGACGGCCGGGTCGACGATCGTGATGTCGTCCAGCTTCAGGGCCTTGCGCGAAGACCGGGCTTTCGCGGGGTGCGCTTGCGATGAACTCAA > 203 BamMC406_6371 TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bam:Bamb_5623_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS) major_facilitator_superfamily_metabolite/H(+)_symporter YP_001816354.1 11 MHPSPSLPTGRSKAAAVFRVTAGNFLEQFDFFLFGFYATQIATVFFPAASEFASLMMTFAVFGAGFLMRPLGAIVLGAYIDDVGRRKGLIVTLAIMASGTILIAFVPGYATIGLLAPVLVLLGRLLQGFSAGAELGGVSVYLAEMATPGRKGFFTSWQSASQQVAIVVAAALGFALNHWLSASAIAAWGWRVPFFVGCMIVPFIFMLRRKLEETQEFKARRHRPTMKEVFTTLMHNWRVVVAGMMLVAMTTTSFYLITVYAPTFGKTVLHLSTADSLLVTLCIGLSNFVWLPIGGALSDRIGRRPLLVGMTVLAIATAYPALSLLAHAPSFVNMLLVLLWLSFMYGIYNGAMVVALTEVMPVEVRVAGFSLAYSLATAVFGGFTPAISTALIHMTGDKAAPGYWMSLAAACALLATFALYRRQPATLTPAH beta_subgroup Burkholderia_ambifaria_MC40-6 Burkholderia_ambifaria_MC40-6 NC_010557 975491..976786 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Lang,D.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Ramette,A.,_Konstantinidis,K.,_Tiedje,J._and_Richardson,P. NA 0:1296 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001027.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002673Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_ambifaria_MC40-6_chromosome_chromosome_3,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_B1Z4Y8_BURA4.gb Pseudomonas_RNA_homology_group_II 172064800 Unpublished NA NC_010557 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1296 3 genomic_DNA NA MC40-6 NA Burkholderia_cepacia_complex_genomovar_VII NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398577 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome3_of_Burkholderia_ambifaria_MC40-6 NA NC_010557.1 ATGCACCCCTCGCCCAGCCTTCCGACCGGACGTTCGAAGGCCGCCGCGGTATTCCGCGTGACGGCCGGCAACTTCCTCGAGCAATTCGACTTCTTCCTGTTCGGCTTCTACGCCACGCAGATCGCCACCGTATTCTTTCCCGCCGCGAGCGAGTTCGCTTCCCTGATGATGACGTTCGCCGTGTTCGGCGCCGGCTTCCTGATGCGGCCGCTGGGTGCGATCGTGCTGGGCGCGTACATCGACGACGTCGGCCGCCGCAAGGGCCTCATCGTCACGCTGGCGATCATGGCGAGCGGCACCATCCTGATCGCGTTCGTGCCGGGCTACGCGACGATCGGCCTGCTCGCGCCGGTGCTCGTGCTGCTCGGGCGCCTGCTGCAAGGCTTTTCGGCGGGTGCCGAGCTGGGTGGCGTGTCGGTCTATCTGGCCGAAATGGCCACGCCCGGCCGCAAGGGTTTCTTCACGAGCTGGCAGTCCGCCAGCCAGCAGGTCGCGATCGTCGTCGCGGCAGCCCTCGGCTTCGCGCTCAATCACTGGCTCAGCGCGTCGGCGATCGCCGCGTGGGGCTGGCGCGTGCCATTCTTCGTCGGCTGCATGATCGTGCCGTTCATCTTCATGCTGCGCCGCAAACTGGAGGAAACGCAGGAGTTCAAGGCACGCCGGCATCGTCCGACCATGAAGGAAGTCTTCACCACGCTGATGCATAACTGGCGCGTCGTGGTCGCCGGCATGATGCTGGTCGCGATGACCACCACGAGTTTCTATCTGATCACGGTCTACGCGCCCACCTTCGGCAAGACCGTCCTGCACCTGAGCACCGCCGACAGCCTGCTTGTGACGCTGTGCATCGGCCTGTCGAACTTCGTGTGGCTGCCGATCGGCGGCGCGCTGTCCGATCGCATCGGCCGCCGGCCGCTGCTCGTCGGCATGACGGTGCTCGCGATCGCGACCGCCTATCCCGCGCTGTCGCTGCTCGCTCATGCGCCGTCGTTCGTCAACATGCTGCTCGTGCTGCTGTGGCTGTCGTTCATGTACGGGATCTACAACGGCGCGATGGTCGTCGCGCTCACGGAAGTGATGCCGGTGGAGGTGCGTGTCGCCGGCTTCTCGCTCGCCTACAGCCTCGCGACGGCCGTGTTCGGCGGCTTCACGCCCGCCATCTCGACCGCGCTCATCCACATGACCGGCGACAAGGCCGCACCGGGCTACTGGATGAGCCTCGCCGCGGCGTGCGCGCTGCTCGCGACGTTCGCGCTCTATCGCCGCCAGCCGGCGACGCTCACGCCCGCGCACTGA > 204 BamMC406_6481 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bam:Bamb_5728_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_001816459.1 11 MNSLNASQIPLAPPRPLTGSDHRTLVLAALGGALEFYDFVIYVFFATVIGQLFFPQSIPDWLRQVQTFGVFAAGYLARPLGGVIMAHFGDLVGRKRMFTMSVMLMALPTLMMGLLPTYASIGVAAPVLLLLCRVLQGAAVGGEVPGAWVFVSEHVPARHVGYACGLLTGGLTLGILLGSLIAAGINQHYSHAAIGEYAWRIPFVVGGLFGILSAFLRRWLHETPVFIDMKRSRALTREVPLKAVLRDHGRAVLVSMMLTWTLTAAIVVVILMTPTLVAKRFHIEPALALQANSAATLCLTIGCIVAGTVAGRIGTARTIFCGCLLLGASYFFMLRQLAVEPSLLLPLYAVSGFFVGAVAAIPVAMVNAFPPVVRFSGISFSYNVAYALFGGLTPVFVSVMLKSNPHAPEFYVGALCIVGALAGFALRPARSSSGIEAAISKP beta_subgroup Burkholderia_ambifaria_MC40-6 Burkholderia_ambifaria_MC40-6 NC_010557 1104630..1105958 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Lang,D.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Ramette,A.,_Konstantinidis,K.,_Tiedje,J._and_Richardson,P. NA 0:1329 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001027.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002673Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_ambifaria_MC40-6_chromosome_chromosome_3,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_B1Z593_BURA4.gb Pseudomonas_RNA_homology_group_II 172064800 Unpublished NA NC_010557 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1329 3 genomic_DNA NA MC40-6 NA Burkholderia_cepacia_complex_genomovar_VII NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398577 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome3_of_Burkholderia_ambifaria_MC40-6 NA NC_010557.1 TCACGGCTTCGAAATGGCCGCCTCGATCCCGGATGACGACCGTGCAGGGCGCAACGCGAAGCCTGCCAGCGCGCCGACGATGCACAGCGCGCCCACATAAAACTCCGGCGCGTGCGGGTTCGATTTGAGCATCACGGACACGAACACCGGCGTCAGGCCGCCGAACAGCGCATACGCGACGTTATACGAGAACGAGATCCCCGAAAAACGCACGACCGGCGGAAACGCGTTGACCATGGCGACCGGGATCGCCGCCACCGCGCCGACGAAGAAACCGGATACCGCGTAGAGTGGCAGCAGCAATGACGGCTCGACGGCGAGCTGCCGGAGCATGAAAAAATACGATGCGCCGAGCAGCAGGCAGCCGCAGAAGATCGTGCGGGCGGTGCCGATGCGTCCGGCCACCGTACCGGCGACGATACATCCGATGGTCAGGCAGAGCGTCGCGGCCGAATTGGCCTGCAGCGCAAGTGCCGGCTCGATATGAAAACGCTTCGCGACGAGCGTCGGCGTCATCAGGATCACGACGACGATCGCGGCGGTCAGCGTCCACGTGAGCATCATCGAAACCAGCACGGCCCTGCCGTGATCGCGCAGCACCGCCTTCAACGGCACCTCGCGGGTCAGCGCGCGGCTGCGCTTCATGTCGATGAACACGGGCGTCTCGTGGAGCCAGCGTCGCAGAAATGCCGATAGGATTCCGAACAATCCGCCGACCACGAAAGGAATCCGCCATGCATACTCGCCGATGGCGGCATGCGAGTAGTGCTGGTTGATCCCCGCCGCGATCAGCGAGCCGAGCAGGATGCCGAGCGTGAGGCCGCCCGTCAGCAGGCCGCATGCATAGCCGACATGGCGCGCCGGCACGTGCTCGGACACGAACACCCACGCGCCGGGCACCTCGCCGCCCACGGCCGCGCCTTGCAACACGCGGCACAGCAGGAGCAGCACGGGCGCGGCGACGCCGATCGATGCGTAAGTCGGCAGCAACCCCATCATCAACGTCGGCAGTGCCATCAGCATCACGCTCATCGTGAACATGCGCTTGCGGCCGACGAGATCGCCGAAATGCGCCATGATCACGCCGCCGAGGGGGCGCGCGAGATAACCGGCCGCGAACACCCCGAACGTCTGCACCTGGCGCAGCCAGTCGGGAATCGACTGCGGGAAGAACAATTGACCGATGACCGTCGCGAAAAACACGTAAATCACGAAGTCGTAAAACTCTAGTGCGCCGCCCAGCGCGGCGAGCACCAGCGTTCGGTGGTCGCTGCCTGTCAGCGGACGGGGCGGCGCAAGCGGAATCTGAGACGCGTTCAATGAATTCAT > 205 Bamb_6422 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bbr:BB2073_sugar_transport_protein major_facilitator_transporter YP_778300.1 11 MHNELTAARRSAFSADERRVVFAASLGAVFEWYDFFLYGSLAALIAAQFFSSLNHTTAFVFALLTFAAGFIVRPIGALVFGRLGDLVGRKHTFLLTILIMGCSTLLVGLLPGYATLGVAAPIILVVLRMLQGLALGGEYGAAATYVAEHAPHDKRGGWTSWIQTTSTIGLLLSLVLIITVRSLTGTSFEVWGWRIPFLFSGVLLGISVYVRLSMHESPAFQRIKAEGRTSRAPLSEAFGQWRYLKLVLQALFGLLAGQAVVWFTALFYAMFFLTQTLKVDAGTTNLLVGLALVISTPLYVFFGRLSDRIGRKPIILCGSFLAALTIVPIFHGLTHFANPALAAAQASSPVAIVSDPADCSFQFNPTGTASFNSACDVARRVLSANSASYATVDAAAGSSTRVKIGATEIAAPSLKGLAPAQAKVAEQQFRVATIRALGEAGYPLKANPETVNRPMILVLLVLLMAYGAMTLGPIAAILVEMFPTRIRYTAMSLPYHVGNGYFGGLLPTVCFALVAQTGDIYFGLWYPVTVAAVSFVIGLVFIREPRRDALYSDD beta_subgroup Burkholderia_ambifaria_AMMD Burkholderia_ambifaria_AMMD NC_008392 1048581..1050245 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Bruce,D.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_Parke,J.,_Coenye,T.,_Konstantinidis,K.,_Ramette,A.,_Tiedje,J._and_Richardson,P. NA 0:1665 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000442.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000046Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_ambifaria_AMMD_chromosome_chromosome_3,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_Q0B1K7_BURCM.gb Pseudomonas_RNA_homology_group_II 115360317 Unpublished NA NC_008392 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1665 3 genomic_DNA NA AMMD NA Burkholderia_cepacia_complex_genomovar_VII NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 339670 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_Chromosome_3_of_Burkholderia_cepacia_AMMD NA NC_008392.1 ATGCACAACGAGCTCACCGCGGCACGCCGTAGTGCCTTCAGCGCCGACGAGAGGAGAGTGGTTTTTGCCGCCTCCCTCGGAGCTGTATTCGAATGGTACGACTTCTTCTTATATGGATCGCTGGCGGCACTGATTGCTGCGCAATTCTTCAGTAGTCTGAATCATACGACTGCGTTTGTTTTCGCGCTGCTGACCTTCGCGGCCGGGTTCATTGTTCGACCGATTGGAGCGCTTGTATTCGGCAGACTGGGCGATCTCGTCGGCCGAAAACACACGTTTCTATTGACGATTCTCATCATGGGTTGCTCGACGCTGTTGGTCGGGTTGTTGCCTGGCTACGCAACCCTGGGCGTTGCCGCACCGATTATCTTGGTCGTTCTTCGAATGCTCCAGGGCTTGGCGCTTGGCGGAGAGTACGGCGCGGCGGCGACATACGTTGCCGAGCACGCGCCGCATGACAAGCGAGGCGGGTGGACCTCATGGATTCAGACCACGTCCACGATCGGGCTGCTGCTGTCGCTGGTCTTGATCATCACCGTGCGTTCGCTGACGGGTACATCGTTCGAGGTGTGGGGGTGGCGCATCCCCTTCTTGTTTTCCGGCGTCCTGTTGGGGATTTCCGTATATGTGCGTCTTTCGATGCATGAGTCACCGGCGTTCCAGCGCATCAAGGCAGAGGGACGAACGTCTCGCGCACCGTTGTCGGAAGCATTTGGTCAGTGGCGCTATCTGAAGCTCGTCCTGCAGGCTCTGTTTGGATTGCTTGCGGGACAGGCGGTTGTATGGTTCACCGCGCTTTTTTACGCGATGTTCTTTCTGACGCAGACATTGAAGGTCGATGCCGGCACAACGAACTTGTTAGTGGGACTTGCGCTGGTCATCAGTACACCGCTCTACGTATTCTTTGGACGTCTTTCCGACCGCATCGGACGAAAGCCGATCATTCTGTGTGGCTCGTTCCTGGCGGCATTGACTATCGTGCCGATCTTTCATGGGTTGACTCACTTTGCCAACCCGGCATTGGCTGCCGCTCAGGCGTCTTCGCCGGTGGCCATCGTCAGTGATCCGGCCGACTGCTCGTTCCAGTTCAATCCAACCGGTACCGCATCGTTCAACAGCGCGTGTGACGTTGCGCGCCGTGTGCTGTCGGCAAATTCCGCAAGTTACGCGACAGTCGATGCAGCCGCCGGGTCAAGCACGCGCGTCAAGATTGGCGCAACGGAGATCGCTGCGCCTTCGTTGAAAGGGCTTGCTCCGGCACAAGCGAAAGTAGCGGAGCAGCAGTTCAGGGTGGCCACGATCAGGGCGTTGGGCGAGGCAGGATATCCGCTGAAGGCTAATCCGGAGACGGTGAATCGCCCGATGATTCTCGTTCTGCTTGTGCTGCTCATGGCGTACGGAGCGATGACCCTTGGCCCTATTGCCGCCATTCTTGTCGAGATGTTCCCCACACGGATCAGGTACACAGCGATGTCGTTGCCGTATCACGTCGGCAACGGCTATTTTGGTGGGCTACTTCCGACGGTGTGTTTTGCGCTGGTTGCGCAGACAGGGGACATCTACTTCGGGCTCTGGTATCCGGTGACAGTCGCAGCGGTGTCGTTCGTCATAGGGCTGGTGTTCATCCGAGAACCTCGTCGAGACGCACTTTATAGCGACGACTAA > 206 Bamb_3972 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bur:Bcep18194_B1297_major_facilitator_superfamily_(MFS_1)_transporter major_facilitator_transporter YP_775860.1 11 METSALSFAGSQVDARAAAKKRRLIAAAAVGNALEFYDFTVYSFFAILIGKLFFPVHSSFGQLMLAVASFGVGFVTRPLGGLVIGMYADRAGRKKAMILTLLLMALGTATIAVAPTFAQIGLAAPLLLVLARLLQGFASGGEVGASTTLLLEQAPQHRRGFYASFQFSSQGLAALAGALTGVALTSTLNAAQLESWGWRVPFIIGTLFVPLGYWLRRTVEEVPPAAPAAAATHDEPVASLPLAAVLRHHGKAVFAGLGVTIGGTSIHYIIVFYMAIYGVQVLHLPTWLSMTAGCVAGAILMLVTPIGGHLSDIYGRNRIAWWTRIVLMAAIYPAFIALNRWPGAASLLSIIAALSIVHAINIGATGAMLGELFPRAVRATGGALVYSVGVAIFGGFAQFFVTWLIAATGNANAPAWYAIGCGAFTLLAIRCMDEKAGKALD beta_subgroup Burkholderia_ambifaria_AMMD Burkholderia_ambifaria_AMMD NC_008391 870864..872189 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Bruce,D.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_Parke,J.,_Coenye,T.,_Konstantinidis,K.,_Ramette,A.,_Tiedje,J._and_Richardson,P. NA 0:1326 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000441.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000046Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_ambifaria_AMMD_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_Q0B8J7_BURCM.gb Pseudomonas_RNA_homology_group_II 115357970 Unpublished NA NC_008391 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1326 2 genomic_DNA NA AMMD NA Burkholderia_cepacia_complex_genomovar_VII NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 339670 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_Chromosome_2_of_Burkholderia_cepacia_AMMD NA NC_008391.1 ATGGAAACGTCCGCCCTTTCGTTCGCCGGCTCGCAGGTCGATGCCCGCGCCGCCGCGAAGAAGCGCCGCCTGATCGCGGCCGCCGCGGTCGGCAACGCGCTCGAGTTCTACGACTTCACGGTCTACAGCTTCTTCGCGATCCTGATCGGCAAGCTGTTCTTTCCCGTGCACTCGTCGTTCGGGCAGTTGATGCTCGCGGTCGCGAGCTTCGGCGTTGGCTTCGTCACGCGTCCGCTCGGCGGGCTCGTGATCGGCATGTACGCCGACCGCGCCGGCCGCAAGAAGGCGATGATCCTCACGCTGCTGCTGATGGCGCTGGGCACCGCGACGATCGCGGTCGCGCCGACCTTCGCGCAGATCGGCCTCGCCGCACCGCTGCTGCTCGTGCTCGCGCGGCTCCTGCAGGGGTTCGCGTCGGGCGGCGAAGTCGGCGCGTCGACGACGCTGCTGCTCGAACAGGCGCCGCAGCACCGCCGCGGCTTCTACGCGTCGTTTCAGTTCTCGAGCCAGGGGCTTGCCGCGCTCGCGGGGGCGCTGACCGGCGTCGCGCTCACGTCGACACTCAATGCCGCGCAGCTCGAAAGCTGGGGCTGGCGCGTGCCGTTCATCATCGGCACGCTGTTCGTGCCGCTCGGCTACTGGCTGCGCCGCACCGTCGAGGAAGTGCCGCCTGCCGCGCCCGCAGCCGCCGCCACGCACGACGAGCCGGTCGCGTCGCTGCCGCTCGCCGCCGTGCTGCGCCATCACGGCAAGGCCGTGTTCGCGGGCCTCGGCGTGACGATCGGCGGCACGTCGATCCACTACATCATCGTGTTCTACATGGCGATCTACGGCGTGCAGGTGCTGCACCTGCCGACCTGGCTGTCGATGACGGCCGGCTGCGTCGCCGGCGCGATCCTGATGCTCGTGACGCCGATCGGCGGCCACCTCTCGGATATCTATGGACGCAACCGGATCGCCTGGTGGACGCGCATCGTGCTGATGGCCGCGATCTATCCGGCGTTCATTGCGCTGAACCGCTGGCCGGGCGCCGCGTCGCTGCTCTCGATCATCGCTGCGCTGTCGATCGTGCACGCGATCAACATCGGCGCGACGGGTGCGATGCTCGGCGAATTGTTCCCGCGCGCGGTGCGGGCGACCGGCGGTGCGCTGGTGTATAGCGTGGGCGTCGCAATCTTCGGCGGCTTCGCGCAGTTCTTCGTCACGTGGCTGATCGCGGCGACCGGGAATGCGAATGCGCCTGCGTGGTATGCGATCGGGTGTGGCGCGTTCACGCTGCTTGCGATTCGGTGCATGGATGAGAAGGCGGGGAAGGCGCTTGATTGA > 207 Bamb_0608 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bur:Bcep18194_A3805_major_facilitator_superfamily_(MFS_1)_transporter major_facilitator_transporter YP_772501.1 11 MHAVTQSSSIASSPRVWRAVVAASIGNALEWFDLVVYGFFAVTISKLFFPAGNDTVSLLLTLGTFGVSFFMRPLGAIVLGAYADRAGRKGALTLSILLMMAGTLVIAVLPTYGTIGVAAPLILVAARLMQGFSAGGEFGSATAFLAEHVPGRRGFFASWQVASQGLTTLLAAGFGTVLNAQLTAEQMAAWGWRIPFFFGLLLGPVAYYIRSKVDETPEFLAAESTATPLRDTFASHKARLVAAMGVVVLGTVATYLVLFMPTYGVKQLGLAPSAAFAAILVVGVIQMAFAPLVGHWSDRYGRVRVMIAPALGILVLIYPAFAYLVAHPGFGTLIALQVLLAFLMTGYFAALPGLLSEVFPVQTRTTGMSLAYNVAVTIFGGFGPFIIAWLIRATGMKTAPSFYLMFAAVLSLAALFVLRRRFGFR beta_subgroup Burkholderia_ambifaria_AMMD Burkholderia_ambifaria_AMMD NC_008390 679362..680639 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Bruce,D.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_Parke,J.,_Coenye,T.,_Konstantinidis,K.,_Ramette,A.,_Tiedje,J._and_Richardson,P. NA 0:1278 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000440.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000046Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_ambifaria_AMMD_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_ambifaria_Q0BI56_BURCM.gb Pseudomonas_RNA_homology_group_II 115350056 Unpublished NA NC_008390 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1278 1 genomic_DNA NA AMMD NA Burkholderia_cepacia_complex_genomovar_VII NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 339670 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_Chromosome_1_of_Burkholderia_cepacia_AMMD NA NC_008390.1 ATGCACGCCGTCACGCAGTCCAGCTCCATTGCCTCGTCGCCGCGCGTGTGGCGCGCGGTGGTTGCCGCGTCGATCGGCAACGCGCTCGAGTGGTTCGACCTCGTCGTCTACGGCTTCTTCGCGGTGACGATCTCGAAGCTGTTCTTTCCGGCCGGCAACGACACCGTGTCGCTGCTGCTCACGCTCGGCACGTTCGGCGTGTCCTTCTTCATGCGTCCGCTCGGCGCGATCGTGCTCGGCGCGTACGCCGACCGCGCGGGCCGCAAGGGCGCGCTCACGCTGTCGATCCTGCTGATGATGGCCGGCACGCTCGTCATCGCGGTGCTGCCGACCTACGGGACGATCGGCGTCGCGGCGCCGCTGATCCTCGTCGCCGCACGGCTGATGCAGGGTTTCTCGGCGGGCGGCGAATTCGGCAGCGCGACCGCGTTCCTGGCCGAGCACGTGCCGGGCCGGCGCGGCTTCTTCGCGAGCTGGCAGGTCGCGAGCCAGGGGCTCACGACCCTGCTTGCCGCCGGTTTCGGCACCGTGCTGAACGCGCAGCTCACGGCCGAGCAGATGGCCGCGTGGGGCTGGCGCATTCCGTTCTTCTTCGGGCTGCTGCTCGGGCCCGTCGCGTACTACATCCGCTCGAAGGTCGACGAGACGCCCGAATTCCTCGCGGCCGAAAGCACCGCGACCCCGTTGCGCGACACGTTCGCGTCGCACAAGGCGCGGCTCGTCGCCGCGATGGGCGTGGTCGTGCTCGGCACCGTCGCGACCTATCTCGTGCTGTTCATGCCGACCTACGGCGTGAAGCAGCTCGGCCTCGCACCGTCGGCCGCGTTCGCGGCGATCCTCGTCGTCGGCGTGATCCAGATGGCGTTCGCGCCGCTCGTCGGCCACTGGTCGGATCGCTACGGCCGCGTGCGCGTGATGATCGCGCCGGCGCTCGGCATTCTCGTGCTGATCTATCCGGCATTCGCGTACCTAGTCGCGCATCCGGGCTTCGGCACGCTGATCGCGCTGCAGGTGCTGCTCGCGTTCCTGATGACCGGCTATTTCGCGGCGTTGCCGGGCCTGTTGTCGGAAGTGTTTCCGGTGCAGACGCGCACGACCGGGATGTCGCTCGCGTATAACGTCGCGGTGACGATCTTCGGCGGCTTCGGGCCGTTCATCATCGCGTGGCTGATCCGCGCGACCGGGATGAAGACCGCGCCGAGCTTCTACCTGATGTTCGCGGCCGTGCTGAGCCTCGCGGCGCTGTTCGTGCTGCGGCGGCGGTTCGGGTTCCGGTGA > 208 Bcen2424_0717 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bcn:Bcen_0233_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_834363.1 11 MHAVTQSSSIASSPRVWRAVVAASIGNALEWFDLVVYGFFAVTISKLFFPAGNDTVSLLLTLGTFGVSFFMRPLGAIVLGAYADRAGRKAALTLSILLMMAGTLIIAVLPTYGTIGVAAPVILVAARLMQGFSAGGEFGSATAFLAEHVPGRRGFFASWQVASQGLTTLLAAGFGTVLNAQLTADQMASWGWRVPFFFGLLLGPVAYYIRTKVDETPEFLAAEGTANPLRDTFASHKARLVAAMGVVVLGTVATYLVLFMPTYGVKQLGLAPSAAFAAILVVGVIQMAFAPLVGHWSDRYGRVRVMIAPAVGILVLIYPAFAYLVAHPGFGTLIALQVLLAFLMTGYFAALPGLLSEVFPVQTRTTGMSLAYNVAVTIFGGFGPFIIAWLIRETGMKTAPSFYLMFAAVLSLAALVVLRRRFGFR beta_subgroup Burkholderia_cenocepacia_HI2424 Burkholderia_cenocepacia_HI2424 NC_008542 796384..797661 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_LiPuma,J.J.,_Gonzalez,C.F.,_Konstantinidis,K.,_Tiedje,J.M._and_Richardson,P. NA 0:1278 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000458.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3635681Source_DNA_and_bacteria_available_from_James_M._Tiedje(tiedjej@msu.edu)Contacts:_James_M._Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 12-SEP-2011 Burkholderia_cenocepacia_HI2424_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cenocepacia_A0K4P3_BURCH.gb Pseudomonas_RNA_homology_group_II 116688024 Unpublished NA NC_008542 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1278 1 genomic_DNA NA HI2424 NA Burkholderia_cepacia_genomovar_IIIb NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 331272 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_Chromosome_1_of_Burkholderia_cenocepacia_HI2424 NA NC_008542.1 ATGCATGCGGTCACGCAGTCCAGCTCCATTGCCTCGTCGCCGCGCGTGTGGCGCGCGGTGGTCGCCGCGTCGATCGGCAACGCGCTCGAGTGGTTCGATCTCGTCGTCTACGGCTTTTTCGCGGTGACGATCTCGAAGCTGTTCTTCCCGGCCGGCAACGACACCGTGTCGCTGCTGCTCACGCTCGGCACGTTCGGCGTGTCGTTCTTCATGCGCCCGCTCGGCGCGATCGTGCTCGGCGCGTATGCCGACCGCGCGGGTCGCAAGGCCGCGCTCACGCTGTCGATCCTGCTGATGATGGCCGGCACGCTGATCATCGCGGTGCTGCCGACCTACGGGACGATCGGCGTCGCCGCGCCGGTGATCCTCGTCGCCGCGCGGCTGATGCAGGGCTTCTCCGCCGGCGGCGAGTTCGGCAGCGCGACCGCGTTCCTCGCCGAGCACGTGCCGGGCCGGCGCGGCTTCTTCGCGAGCTGGCAGGTCGCGAGCCAGGGGCTCACGACGCTGCTCGCCGCGGGCTTCGGCACCGTGCTGAACGCGCAGCTCACGGCCGACCAGATGGCGTCGTGGGGCTGGCGCGTGCCGTTCTTCTTCGGGTTGCTGCTCGGGCCCGTCGCGTACTACATCCGCACCAAGGTCGACGAGACGCCCGAATTCCTCGCGGCCGAAGGCACCGCGAACCCGCTGCGCGATACGTTCGCGTCGCACAAGGCGCGCCTCGTCGCGGCCATGGGCGTGGTCGTGCTCGGCACCGTCGCCACCTATCTCGTGCTGTTCATGCCGACCTATGGCGTGAAGCAGCTCGGCCTCGCGCCGTCGGCCGCGTTTGCCGCGATTCTCGTGGTCGGCGTGATCCAGATGGCGTTCGCGCCGCTCGTCGGCCACTGGTCGGATCGCTACGGCCGCGTGCGCGTGATGATCGCGCCGGCCGTCGGCATCCTCGTGCTGATCTATCCGGCGTTCGCGTATCTCGTCGCGCATCCGGGCTTCGGCACGCTGATCGCGCTGCAGGTGCTGCTCGCGTTCCTGATGACCGGCTACTTCGCGGCGCTGCCGGGGCTGTTGTCCGAGGTGTTTCCGGTGCAGACGCGCACGACCGGGATGTCGCTCGCCTATAACGTCGCGGTGACGATCTTCGGCGGCTTCGGGCCGTTCATCATCGCGTGGCTGATCCGCGAGACCGGGATGAAGACCGCGCCGAGCTTCTATCTGATGTTCGCGGCCGTGCTGAGCCTCGCGGCGCTGGTCGTGCTGCGGCGGCGGTTCGGGTTTCGGTGA > 209 Bcen2424_1696 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bcn:Bcen_1217_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_835341.1 11 MNSQSLDLGGHAGGPESARPPAASAGAGADAAALPGRRVTLGDFMDDLPVGALHRFVVWVIGVGLFFDMYEIFLVSTIGSALQHEYGLSRQSADFKLLLASAFIGMFVGAMCLGSLADRIGRRKAFLLTLGWYSAFSLVGAFSVNADMLVACRFLTGIGVGAIYPVADSFLSEILPKDKRGRLAAWAYTTSYVAVPLVGFLALWLNPLQVAGVAGWRIILAIGSLGAVYVLLVQHRLPESPRWLLAQGRTADAHAALRRFAESAGVRVPEHFAEPVEPQRPLGLGERIALLRRQPYGARYVMLAIFHLLQGFGYYGFGTLAGTVVKSRGFDVTDSTLFIALSFIGYPIGSLLSIPLLNWIERRTLVIVSILSIAVFGLCFAYSGNTMLIVGFGFLTTCASNVFSNAYHVYQAEIFPARVRSTAIGSTYALSRIVSGALPFVLLPVLGHYGAGAMFGVISVALGIVAVTLRVLGPLTTRRSQDEINPV beta_subgroup Burkholderia_cenocepacia_HI2424 Burkholderia_cenocepacia_HI2424 NC_008542 1884072..1885535 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_LiPuma,J.J.,_Gonzalez,C.F.,_Konstantinidis,K.,_Tiedje,J.M._and_Richardson,P. NA 0:1464 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000458.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3635681Source_DNA_and_bacteria_available_from_James_M._Tiedje(tiedjej@msu.edu)Contacts:_James_M._Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 12-SEP-2011 Burkholderia_cenocepacia_HI2424_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cenocepacia_A0K7H1_BURCH.gb Pseudomonas_RNA_homology_group_II 116688024 Unpublished NA NC_008542 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1464 1 genomic_DNA NA HI2424 NA Burkholderia_cepacia_genomovar_IIIb NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 331272 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_Chromosome_1_of_Burkholderia_cenocepacia_HI2424 NA NC_008542.1 TCAAACCGGATTGATCTCGTCCTGGCTGCGCCGCGTGGTCAGCGGCCCGAGCACGCGCAGCGTGACGGCGACGATGCCGAGTGCGACCGAGATCACGCCGAACATCGCGCCCGCGCCGTAGTGGCCGAGCACCGGCAGCAACACGAACGGCAGCGCGCCGCTCACGATCCGCGACAGCGCATAGGTACTGCCGATCGCCGTCGAGCGCACGCGCGCCGGGAAAATCTCGGCCTGATACACGTGATACGCGTTGCTGAACACGTTCGACGCACAGGTCGTCAGGAACCCGAAGCCGACGATCAGCATCGTATTGCCCGAATACGCGAAGCACAGCCCGAACACCGCGATCGACAGGATCGACACGATCACGAGCGTGCGGCGCTCGATCCAGTTGAGCAGCGGAATCGACAGCAGCGAGCCGATCGGATAGCCGATGAACGACAGCGCGATGAACAGCGTGCTGTCCGTCACGTCGAAGCCGCGGCTTTTCACGACCGTGCCGGCCAGCGTGCCGAACCCGTAGTAGCCGAAGCCCTGCAACAGGTGAAAGATCGCCAGCATCACATAGCGGGCGCCATACGGTTGGCGGCGTAGCAGCGCGATGCGCTCGCCGAGCCCGAGCGGCCGCTGCGGCTCGACCGGTTCCGCGAAGTGTTCGGGCACACGCACGCCGGCGCTTTCCGCGAAACGCCGCAGCGCCGCGTGCGCATCGGCCGTGCGGCCTTGCGCGAGCAGCCAGCGCGGGCTTTCCGGCAGCCGGTGCTGGACGAGCAGCACGTACACGGCGCCGAGGCTGCCGATCGCGAGGATGATGCGCCAGCCGGCGACGCCCGCCACCTGCAACGGATTCAGCCACAGCGCGAGAAAGCCGACGAGCGGCACCGCGACATACGAAGTCGTGTAGGCCCACGCGGCGAGCCGCCCGCGCTTGTCCTTCGGCAGGATTTCGGACAGGAAGCTGTCGGCGACCGGATAGATCGCGCCGACGCCGATGCCCGTCAGGAACCGGCATGCCACGAGCATGTCGGCGTTCACGGAAAACGCACCGACCAGCGAGAACGCGCTGTACCACCCGAGCGTGAGCAGGAACGCCTTGCGCCGGCCGATGCGGTCGGCCAGGCTGCCAAGGCACATCGCGCCGACGAACATGCCGATGAACGCCGACGCCAGCAATAGCTTGAAATCGGCGCTTTGCCGGCTCAGCCCGTATTCGTGCTGCAACGCGGAGCCGATCGTACTGACGAGAAAAATCTCGTACATGTCGAAGAACAGCCCGACGCCGATTACCCAGACGACGAATCGATGCAATGCGCCGACCGGCAGATCGTCCATGAAATCGCCGAGCGTGACGCGGCGGCCGGGAAGGGCTGCCGCATCGGCGCCGGCGCCTGCTGAAGCGGCCGGCGGCCGGGCGGATTCAGGGCCGCCGGCATGGCCGCCTAGGTCGAGGGATTGGCTGTTCAT > 210 BCPG_02096 NA General_substrate_transporter:Major_facilitator_superfamily EAY63800.1 11 MPIIVDRPAPPKAAAHLYQGTWRRFMATLGGQISHSPMTGEEKKVIFASSLGTVFEWYDFYLAGSLAAYISKSFFSGVNPTAAFIFTLLGFAAGFAVRPFGAIVFGRLGDLVGRKHTFLVTIVIMGVSTFVVGFLPGYASIGIAAPVIFIAMRLLQGLALGGEYGGAATYVAEHAPANRRGFYTAWIQTTATLGLFLSLLVILGVRTFIGEEAFGNWGWRVPFVASILLLGVSVWIRLQLNESPVFLRIKAEGKTSKAPLTEAFGQWKNLKIVILALIGLTAGQAVVWYTGQFYALFFLTQTLKVDGASANILIAIALLIGTPFFLFFGSLSDKIGRKPIILAGCLIAALTYFPLFKALTHYANPQLELATQKAPITVVADPATCSFQFNPVGTSKFTTSCDIAKSALAKAGLNYENVAAPAGTLAEIKVGDTVIQTYDGKAADAKAQGAAFDKTLASTLKGAGYPAKADPAQLNWPMTIVILTILVIFVTMVYGPIAAMLVEMFPTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAAKGNIYSGLWYPIVIALATFVIGLLFVKETKDSDIYAQD beta_subgroup Burkholderia_cenocepacia_PC184 Burkholderia_cenocepacia_PC184 CH482377 2524407..2526140 Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Borowsky,M.L.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Young,S.,_LaButti,K.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_White,J.,_Larson,L.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Oleary,S.,_LiPuma,J._and_Lory,S. NA 0:1734 NA NA 07-FEB-2007 Burkholderia_cenocepacia_PC184_supercont1.1_genomic_scaffold,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cenocepacia_A2VVQ4_9BURK.gb Pseudomonas_RNA_homology_group_II 84788935 Unpublished NA CH482377 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1734 NA genomic_DNA NA PC184 NA Burkholderia_cepacia_genomovar_IIIb NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 350702 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex The_Genome_Sequence_of_Burkholderia_cenocepacia_(strain_PC184) NA CH482377.1 TCAATCCTGCGCGTAGATGTCCGAGTCCTTCGTCTCCTTGACGAACAGCAGGCCGATCACGAACGTGGCCAGCGCGATCACGATCGGATACCAGAGCCCCGAGTAGATGTTGCCCTTCGCCGCGACGATCGCGAACGCAGTTGCCGGCAGGAAGCCGCCGAACCAGCCGTTGCCGATGTGATAGGGCAGCGACATCGACGTGTAGCGGATTCGCGTCGGGAACATCTCGACCAGCATCGCGGCGATCGGGCCGTAGACCATCGTCACGAAGATCACGAGGATCGTCAGGATCACGATCGTCATCGGCCAGTTGAGTTGCGCCGGGTCGGCCTTCGCCGGGTAGCCGGCCCCCTTCAGCGTCGACGCGAGGGTCTTGTCGAACGCCGCGCCCTGCGCCTTCGCGTCGGCCGCCTTGCCGTCGTAGGTCTGGATCACCGTGTCGCCGACCTTGATTTCGGCCAGCGTGCCGGCCGGCGCCGCGACGTTCTCGTAGTTCAGGCCGGCCTTCGCGAGCGCGCTCTTCGCGATGTCGCACGAGGTGGTGAACTTCGACGTGCCCACCGGGTTGAACTGGAACGAGCAGGTAGCCGGATCGGCGACGACCGTGATCGGCGCCTTCTGCGTCGCTAGTTCGAGCTGCGGGTTCGCGTAGTGCGTGAGCGCCTTGAACAGCGGGAAGTAGGTCAGCGCGGCGATCAGGCAGCCGGCAAGGATGATCGGCTTGCGGCCGATCTTGTCCGACAGCGAGCCGAAGAACAGGAAGAACGGCGTGCCGATCAGGAGCGCGATCGCGATCAGGATGTTCGCGCTGGCGCCGTCGACCTTCAGCGTCTGCGTGAGGAAGAACAGCGCGTAGAACTGGCCCGTGTACCACACGACCGCCTGGCCGGCCGTCAGGCCGATCAGCGCGAGGATCACGATCTTCAGGTTCTTCCACTGGCCGAACGCTTCGGTCAGCGGCGCCTTCGACGTCTTGCCTTCCGCCTTGATGCGCAGGAACACCGGCGATTCGTTCAGTTGCAGCCGGATCCACACCGACACCCCGAGCAGCAGGATCGATGCGACGAACGGCACGCGCCAGCCCCAGTTGCCGAACGCTTCCTCGCCGATGAACGTGCGCACGCCCAGGATCACGAGCAGCGACAGGAACAGGCCGAGCGTGGCCGTCGTCTGGATCCAGGCCGTGTAGAAGCCGCGCCGGTTGGCCGGCGCATGCTCGGCGACGTAGGTCGCCGCGCCGCCGTACTCGCCGCCGAGCGCGAGGCCCTGCAACAGCCGCATCGCGATGAAGATCACGGGGGCGGCGATGCCGATCGACGCGTAGCCCGGCAGGAAGCCGACCACGAACGTCGAGACGCCCATGATCACGATCGTCACGAGGAACGTGTGCTTGCGGCCGACGAGGTCGCCGAGCCGGCCGAACACGATCGCGCCGAACGGCCGCACCGCGAAGCCGGCGGCGAAGCCGAGCAGCGTGAAGATGAACGCGGCGGTCGGATTGACGCCGGAGAAGAAGCTCTTGCTGATGTAGGCCGCGAGCGAGCCGGCCAGGTAAAAGTCGTACCACTCGAACACGGTGCCGAGCGACGACGCGAAGATCACCTTCTTCTCTTCGCCCGTCATCGGCGAGTGCGAAATTTGCCCGCCTAACGTTGCCATGAATCGTCTCCAAGTCCCTTGATATAGATGTGCGGCCGCCTTGGGAGGGGCGGGCCTGTCGACGATTATTGGCAC > 211 BCPG_02171 NA hypothetical_protein EAY63870.1 11 MPLSCRAPFAHLAAAARCIGGRMSTPDALNERPSSIDIGTTLDDGPFTLMQRCVVVLAALAIVLDGFDGQLIGFAIPVLIREWGITRGAFAPAVAAGLVGMGIGSACAGIVADRFGRRQAVIGSVFLFGIATCAIGFAPDVATIAMLRFCAGLGIGGALPTATTMTAEYTPARRRTMMVTATIVCVPLGGMLAGLFAHEVLPRYGWRGLFFAGGALPLVLGFVLVRALPESPRYLARRPARWPELGALLVRMQRPVAPGTVFTDTKDARAPGSRGGFGALFASGQARDTIALWCAFFMCLLAVYAAFSWLPTMLAASGLSVSVAGSGLTAYNLGGVIGALLCAWAIAHAGSRWPLALCSIGGAASAVWLMGVDASRHTGWLIVGLGLHGLFVNAVQSTMYALCAYIYPTAVRATGTASALAFGRLGAILSAFAGAIVITAGGAGAYLTMLAVAMGVVCIALLVMRRHIPRLSRAAQPREGEALARTSS beta_subgroup Burkholderia_cenocepacia_PC184 Burkholderia_cenocepacia_PC184 CH482377 2611275..2612741 Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Borowsky,M.L.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Young,S.,_LaButti,K.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_White,J.,_Larson,L.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Oleary,S.,_LiPuma,J._and_Lory,S. NA 0:1467 NA NA 07-FEB-2007 Burkholderia_cenocepacia_PC184_supercont1.1_genomic_scaffold,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cenocepacia_A2VVX4_9BURK.gb Pseudomonas_RNA_homology_group_II 84788935 Unpublished NA CH482377 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1467 NA genomic_DNA NA PC184 NA Burkholderia_cepacia_genomovar_IIIb NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 350702 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex The_Genome_Sequence_of_Burkholderia_cenocepacia_(strain_PC184) NA CH482377.1 ATGCCGTTGTCTTGTCGCGCACCGTTCGCGCATCTTGCCGCCGCCGCGCGGTGCATCGGAGGCCGCATGAGCACGCCCGACGCACTGAATGAACGGCCGTCGTCGATCGACATCGGCACGACGCTCGACGACGGCCCGTTCACGCTGATGCAGCGCTGCGTGGTGGTGCTCGCCGCGCTCGCGATCGTGCTCGACGGCTTCGACGGCCAGTTGATCGGTTTCGCGATTCCGGTGCTGATCCGCGAATGGGGCATCACGCGCGGTGCGTTCGCGCCGGCCGTCGCGGCGGGACTGGTCGGGATGGGCATCGGCAGCGCCTGCGCGGGGATCGTCGCGGACCGCTTCGGCCGCCGCCAGGCCGTGATCGGCAGCGTGTTCCTGTTCGGCATCGCGACCTGCGCGATCGGGTTCGCGCCCGACGTCGCGACGATCGCGATGCTGCGTTTTTGCGCGGGGCTCGGGATCGGCGGCGCGTTGCCGACGGCCACGACGATGACCGCCGAATACACGCCCGCGCGGCGCCGCACGATGATGGTGACCGCGACGATCGTCTGCGTGCCGCTCGGCGGGATGCTGGCGGGCCTGTTCGCGCACGAGGTGCTGCCGCGCTACGGCTGGCGCGGGCTGTTCTTCGCGGGCGGCGCGTTGCCGCTCGTGCTCGGCTTCGTGCTGGTGCGCGCGTTGCCCGAATCGCCGCGTTATCTCGCGCGGCGCCCCGCACGCTGGCCGGAACTCGGCGCGCTGCTCGTGCGGATGCAGCGGCCGGTCGCGCCGGGCACCGTGTTCACCGATACGAAGGACGCCCGTGCGCCGGGCAGCCGCGGCGGCTTCGGCGCGCTGTTCGCGAGCGGCCAGGCGCGCGACACGATCGCGCTGTGGTGCGCGTTCTTCATGTGCCTGCTCGCCGTGTACGCGGCGTTCAGCTGGTTGCCGACGATGCTCGCGGCGAGCGGGTTGAGCGTGTCGGTCGCGGGCTCGGGCCTCACCGCGTACAACCTCGGCGGCGTGATCGGTGCGCTGCTGTGCGCATGGGCGATCGCGCATGCGGGGTCGCGCTGGCCGCTCGCGCTGTGCAGCATCGGCGGCGCGGCGAGCGCGGTATGGCTGATGGGCGTCGATGCCAGCCGCCATACCGGCTGGCTGATCGTCGGGCTCGGTCTGCACGGGCTGTTCGTCAACGCGGTGCAGTCGACGATGTATGCGCTGTGCGCGTACATCTATCCGACGGCCGTGCGCGCGACGGGCACCGCGAGTGCGCTCGCGTTCGGCCGGCTCGGCGCGATCCTCAGCGCGTTCGCGGGCGCGATCGTGATCACGGCGGGCGGCGCGGGTGCGTACCTGACGATGCTGGCCGTCGCGATGGGGGTGGTGTGCATCGCGCTGCTCGTGATGCGGCGGCACATTCCGCGGCTGTCGCGCGCGGCGCAGCCGCGCGAAGGGGAGGCGCTCGCCCGCACGTCGTCGTGA > 212 Bcenmc03_0951 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bur:Bcep18194_A4094_major_facilitator_superfamily_(MFS_1)_transporter general_substrate_transporter YP_001764250.1 11 MSASPPAVAHATGSAGAVSHRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPIGSFLFGHFGDRIGRKSTLVASLLVMGVSTTAIGFVPGYDTIGALAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPQGKRGWFGMFPQLGPSVGFLMSNGLFFALALSLSDEQFRSWGWRIPFLVSAVLVALGLYVRLKITETPAFQAALDRNERVRVPVATLVTQHWRPTLLGALAMVVCYTLFYISTVFSLSYGVSALHIPRQSFLGLLCFAVVFMGLATPLSAWASDRCGRKPVLVVGAIAALLSGFVMEPLLGSGSMPLVALFLTIELFLMGVTFAPMGALLPELFPTNVRYTGAGVAYNLGGILGASIAPYIAQLLAARGGLSWVGGYVSVAAAISLIGVLLMRETRDASLV beta_subgroup Burkholderia_cenocepacia_MC0-3 Burkholderia_cenocepacia_MC0-3 NC_010508 1051003..1052313 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Bruce,D.,_Goodwin,L.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Tiedje,J._and_Richardson,P. NA 0:1311 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000958.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002674Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 26-JAN-2012 Burkholderia_cenocepacia_MC0-3_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cenocepacia_B1JXL6_BURCC.gb Pseudomonas_RNA_homology_group_II 170731356 Unpublished NA NC_010508 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1311 1 genomic_DNA NA MC0-3 NA Burkholderia_cepacia_genomovar_IIIb NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 406425 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome1_of_Burkholderia_cenocepacia_MC0-3 NA NC_010508.1 TCAGACGAGCGACGCGTCGCGCGTTTCGCGCATCAGCAGGACGCCGATCAGGCTGATCGCCGCCGCCACCGACACATAGCCGCCCACCCACGACAGCCCGCCGCGCGCGGCCAGCAGTTGCGCGATATACGGTGCGATCGACGCGCCGAGAATCCCGCCGAGGTTGTACGCGACGCCCGCGCCCGTATAGCGGACGTTGGTCGGGAACAATTCCGGCAGCAGCGCGCCCATCGGGGCGAACGTCACCCCCATCAGGAACAGCTCGATCGTCAGGAACAGCGCGACGAGCGGCATCGAGCCGCTGCCGAGCAGCGGTTCCATCACGAACCCCGACAACAGCGCGGCGATCGCGCCGACGACCAGCACCGGCTTGCGCCCGCAGCGGTCCGACGCCCATGCGGACAGCGGCGTCGCGAGCCCCATGAAGACGACCGCGAAACACAGCAGGCCGAGGAAGCTCTGGCGCGGAATATGCAGCGCCGACACGCCGTACGACAGCGAGAACACCGTCGAGATGTAGAACAGCGTGTAGCAGACGACCATCGCGAGCGCGCCGAGCAGCGTCGGCCGCCAGTGCTGCGTGACGAGCGTCGCGACCGGCACGCGCACGCGCTCGTTGCGGTCGAGGGCCGCCTGGAACGCGGGCGTTTCGGTGATCTTGAGCCGCACGTACAGGCCGAGCGCGACGAGCACCGCGCTGACGAGGAACGGGATGCGCCAGCCCCAACTGCGGAACTGCTCGTCGGACAGCGACAGCGCGAGCGCGAAGAACAGGCCGTTCGACATCAGGAAGCCGACCGACGGCCCCAGTTGCGGGAACATCCCGAACCAGCCGCGCTTGCCCTGCGGCGCATGCTCGGTCGCGAGCAGCGCCGCGCCGCCCCATTCGCCGCCGAGGCCGATCCCCTGGCCGAAGCGCAGCACGCACAGCAGCACCGGCGCGAGCGCGCCGATCGTGTCGTAGCCGGGCACGAAGCCGATCGCGGTGGTGGACACGCCCATCACGAGCAGCGAGGCGACGAGCGTCGACTTGCGGCCGATGCGATCGCCGAAGTGCCCGAACAGGAACGAGCCGATCGGGCGCGCGATGAAGGCGATGCCGAACGTGACGAACGCCGACAGCGCTTGCGCGGTCGCGGAGCCGTGCGGGAAGAATACGGGGCCGATGACGAGCGCGGCGGCCGTCGCGTACACGTAGAAATCGTAGAACTCGATCGCGGTGCCGATGAAGCTCGCGAACACGATGCGCCGGTGGCTGACGGCGCCGGCCGAACCGGTTGCGTGTGCAACGGCCGGGGGGGATGCGGACAT > 213 Bcenmc03_1592 TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bur:Bcep18194_A4754_citrate-proton_symporter,_(MFS_1) major_facilitator_superfamily_metabolite/H(+)_symporter YP_001764887.1 11 MDVQTDQAALSAQDTRRRVFAIVGASSGNLVEWFDFYIYSFCALYFAPAFFPSGNTTTQLLNTAGVFAAGFLMRPIGGWLFGRIADRHGRRAAMMISVLMMCGGSLVIAVLPTYAQIGALAPALLLVARLFQGLSVGGEYGTSATYMSEVALKGRRGFFASFQYVTLIGGQLCALLVLVILQQTLSAGELKAWGWRIPFVVGAAAALISLYLRKSLDETSTSASRDKKDAGTIRGVWQHKGAFFTVVGFTAGGSLIFYTFTTYMQKYLVNTAGMHAKTASNVMTVALLVYMLMQPVFGALSDKIGRRTSMILFGSFAVIGTVPLMHALKGVTSPVAAFVLITVALAIVSFYTSISGLIKAEMFPPEVRAMGVGLSYAVANAIFGGSAEYVALWFKSIGSEETFYWYVTVLCAISLIVSWRMRDPSKEGYLRHEP beta_subgroup Burkholderia_cenocepacia_MC0-3 Burkholderia_cenocepacia_MC0-3 NC_010508 1758546..1759850 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Bruce,D.,_Goodwin,L.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Tiedje,J._and_Richardson,P. NA 0:1305 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000958.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002674Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 26-JAN-2012 Burkholderia_cenocepacia_MC0-3_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cenocepacia_B1K111_BURCC.gb Pseudomonas_RNA_homology_group_II 170731356 Unpublished NA NC_010508 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1305 1 genomic_DNA NA MC0-3 NA Burkholderia_cepacia_genomovar_IIIb NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 406425 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome1_of_Burkholderia_cenocepacia_MC0-3 NA NC_010508.1 ATGGACGTCCAGACCGACCAAGCTGCGCTGTCCGCGCAAGACACCCGGCGGCGCGTGTTCGCCATCGTCGGCGCCTCATCGGGCAACCTCGTCGAGTGGTTCGACTTCTACATCTACTCGTTCTGCGCGCTGTACTTCGCGCCGGCATTCTTTCCGAGCGGCAACACGACGACGCAGCTGCTGAACACGGCCGGCGTGTTCGCGGCCGGCTTCCTGATGCGTCCGATCGGCGGCTGGCTGTTCGGCCGCATCGCCGACCGTCACGGCCGTCGCGCGGCGATGATGATCTCGGTGCTGATGATGTGCGGCGGGTCGCTCGTGATCGCGGTGCTGCCGACCTATGCGCAGATCGGCGCGCTCGCGCCGGCGCTGCTGCTGGTCGCGCGCCTGTTCCAGGGCCTGTCGGTGGGCGGCGAATACGGGACGAGCGCGACCTACATGAGTGAAGTGGCGCTGAAGGGCCGTCGCGGCTTCTTCGCGTCGTTCCAGTACGTGACGCTGATCGGCGGCCAGCTGTGCGCGCTGCTGGTGCTCGTGATCCTGCAGCAGACGCTGTCGGCCGGCGAACTGAAAGCGTGGGGCTGGCGCATTCCGTTCGTGGTCGGCGCGGCGGCCGCGCTGATTTCGCTGTACCTGCGCAAATCGCTCGACGAAACATCGACGAGCGCATCGCGCGACAAGAAGGACGCCGGCACGATCCGCGGCGTGTGGCAGCACAAGGGCGCGTTCTTCACGGTGGTCGGCTTCACGGCCGGCGGCTCGCTGATCTTCTATACGTTCACGACGTACATGCAGAAGTACCTCGTGAACACGGCCGGCATGCACGCGAAGACGGCCAGCAACGTGATGACCGTCGCGCTGCTCGTCTACATGCTGATGCAGCCGGTGTTCGGCGCGCTGTCGGACAAGATCGGCCGCCGAACGTCGATGATCCTGTTCGGTTCGTTCGCGGTGATCGGCACGGTGCCGCTGATGCATGCGCTGAAAGGCGTGACGAGCCCGGTGGCCGCGTTCGTGCTGATCACGGTTGCGCTGGCGATCGTCAGCTTCTACACGTCGATCAGCGGCCTGATCAAGGCCGAGATGTTCCCGCCGGAAGTGCGCGCGATGGGCGTGGGCCTGTCGTATGCGGTCGCGAACGCGATCTTCGGCGGCTCGGCCGAGTACGTCGCGCTGTGGTTCAAGTCGATCGGCAGCGAGGAAACGTTCTACTGGTACGTGACCGTGCTGTGCGCGATCTCGCTGATCGTGTCGTGGCGGATGCGCGATCCGAGCAAGGAAGGGTACCTGCGCCACGAGCCGTGA > 214 Bcenmc03_5961 TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bur:Bcep18194_B1626_shikimate_transporter shikimate_transporter YP_001779572.1 11 MTPTFDTLDAAGARARSQARKAAIGSFVGAVVDWYDFLLYGIVAALVFNSEFFPKVSPTMGTLAAFATFGVGFLFRPLGGIVFGHYGDRLGRKRMLVLTVMLMGLSTVAIGLLPAFATIGWWAPVLLVLMRAIQGFAVGGEWGGAALMAVESAPKQKKAFYSSGVQVGYGVGLVLATGIVSILSHTLGEAAFKSWGWRLPFVFSIVLVLIGLWVRKNMDESQEFVEKVEHGNRKLRLPVLEALTRHPKAFLLIVALRLAELFTMYIVTAFALSYSTTNLGMSRDLFLNIGLLVGAVSCVTIPCFAWLADRYGLRRIYLIGALIGLASAVPFFVALEARSIAWIVIFSILLANAAHDMVVSVQQPLFTELFGAEYRYSGAGVGYQFASVVGGGFTPFIAVGLVSVAGGSWHLVAGYLAVGCLISLVVAARMRAAR beta_subgroup Burkholderia_cenocepacia_MC0-3 Burkholderia_cenocepacia_MC0-3 NC_010515 3158004..3159308 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Bruce,D.,_Goodwin,L.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Tiedje,J._and_Richardson,P. NA 0:1305 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000959.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002674Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 14-JUL-2011 Burkholderia_cenocepacia_MC0-3_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cenocepacia_B1K5C0_BURCC.gb Pseudomonas_RNA_homology_group_II 170735571 Unpublished NA NC_010515 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1305 2 genomic_DNA NA MC0-3 NA Burkholderia_cepacia_genomovar_IIIb NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 406425 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome2_of_Burkholderia_cenocepacia_MC0-3 NA NC_010515.1 ATGACCCCTACCTTCGACACCCTCGACGCCGCCGGCGCCCGTGCGCGCAGCCAGGCCCGCAAGGCCGCGATCGGCAGCTTCGTCGGCGCCGTCGTCGACTGGTACGATTTCCTGCTGTACGGGATCGTCGCCGCGCTGGTGTTCAATTCCGAGTTTTTCCCGAAAGTCAGCCCGACGATGGGCACGCTCGCGGCGTTCGCCACCTTCGGCGTCGGCTTCCTGTTTCGGCCGCTCGGCGGCATCGTGTTCGGCCACTACGGCGACCGGCTCGGCCGCAAGCGGATGCTCGTGCTGACCGTGATGCTGATGGGGCTGTCGACGGTCGCGATCGGCCTGCTGCCGGCGTTTGCGACGATCGGCTGGTGGGCGCCCGTGCTGCTGGTGCTGATGCGCGCGATCCAGGGTTTCGCGGTCGGCGGCGAATGGGGCGGCGCGGCGCTGATGGCAGTCGAGAGCGCGCCGAAGCAGAAGAAGGCGTTCTACAGCAGCGGCGTGCAGGTCGGCTACGGCGTCGGGCTCGTGCTGGCCACCGGCATCGTCTCGATCCTCAGTCATACGCTCGGCGAGGCCGCGTTCAAGTCGTGGGGCTGGCGTCTGCCGTTCGTGTTCAGCATCGTGCTGGTGCTGATCGGGCTGTGGGTGCGCAAGAACATGGACGAATCGCAGGAGTTCGTCGAGAAGGTCGAGCACGGCAACCGCAAGCTCCGCCTGCCGGTGCTGGAAGCGCTGACGCGCCACCCGAAGGCGTTCCTGCTGATCGTCGCGCTGCGGCTCGCCGAACTGTTCACGATGTACATCGTCACCGCGTTCGCGCTCAGCTATTCGACGACGAACCTCGGCATGTCGCGCGACCTGTTCCTGAACATCGGCCTGCTGGTGGGCGCGGTGAGCTGCGTGACGATCCCCTGCTTCGCGTGGCTTGCCGACCGCTACGGCCTGCGCCGTATCTACCTGATCGGCGCGCTGATCGGTCTTGCGTCGGCGGTGCCGTTCTTCGTCGCACTGGAAGCGCGGTCGATCGCGTGGATCGTGATCTTCTCGATCCTGTTGGCGAACGCCGCGCACGACATGGTCGTGAGCGTCCAGCAGCCGCTGTTCACCGAGCTGTTCGGCGCCGAATACCGCTACAGCGGCGCGGGCGTCGGCTACCAGTTCGCGAGCGTCGTCGGCGGCGGGTTCACGCCGTTCATCGCGGTCGGCCTCGTCAGCGTGGCCGGCGGTTCGTGGCACCTCGTCGCCGGCTACCTGGCGGTCGGCTGCCTGATCTCGCTGGTGGTCGCCGCGCGGATGCGGGCGGCGCGATGA > 215 Bcenmc03_5496 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bam:Bamb_4172_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_001779113.1 11 MSTLAQPAAHTPRRVRNSRLATASMIGTSLEWYDFTIYNTLAALVFNHLFFPSVDPLAGTILAFSTYAVGYVSRPLGGFVFGNLGDRIGRRAVLMLTLVLMGVTTALMGALPTYAQAGILSPILLVALRFVQGVALGGEWAGAVLLSVEHGDQKRRGLSASWTQIGPSFGTLLGTGCIALVTLSTTSDTFLSWGWRVPFAASALLVAFGFWVRRGVDETPQFEQLAESHATAEVPVADVLKYHWKRLLIAGGSRIGSDVLYALIVVFTLTYVTTVLHLSRPVALTAVMIGTACNALAVPFFGALSDRFGRRPVYLAGAIAGIVWAFVFFTLLDSARPVAIVAAVAIGLVIHAVMYGPQGAFVTEQFPTRVRYAGSSLAYTLAGIVGGGFAPLVIAALFRQTGTTTAVSLYVTAALVVTSIALVAARETAHRPLED beta_subgroup Burkholderia_cenocepacia_MC0-3 Burkholderia_cenocepacia_MC0-3 NC_010515 2636378..2637685 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Bruce,D.,_Goodwin,L.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Tiedje,J._and_Richardson,P. NA 0:1308 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000959.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002674Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 14-JUL-2011 Burkholderia_cenocepacia_MC0-3_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cenocepacia_B1K966_BURCC.gb Pseudomonas_RNA_homology_group_II 170735571 Unpublished NA NC_010515 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1308 2 genomic_DNA NA MC0-3 NA Burkholderia_cepacia_genomovar_IIIb NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 406425 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome2_of_Burkholderia_cenocepacia_MC0-3 NA NC_010515.1 TCAATCCTCGAGCGGCCGGTGCGCGGTCTCGCGCGCGGCGACGAGCGCGATCGACGTGACGACGAGCGCGGCGGTGACGTACAACGACACGGCCGTCGTCGTGCCCGTCTGCCGGAACAGCGCGGCGATCACGAGCGGCGCGAAGCCGCCGCCGACGATGCCGGCGAGCGTGTACGCGAGCGACGAGCCCGCATAGCGCACGCGCGTCGGGAATTGTTCGGTCACGAACGCGCCCTGCGGGCCATACATCACCGCATGGATCACGAGGCCGATCGCGACGGCCGCGACGATCGCCACGGGGCGCGCCGAATCGAGCAGCGTGAAGAACACGAACGCCCACACGATGCCGGCGATTGCGCCGGCGAGATACACGGGCCGGCGGCCGAAGCGGTCCGACAGCGCGCCGAAGAACGGCACCGCGAGTGCGTTGCAGGCCGTGCCGATCATCACGGCCGTCAGCGCGACGGGGCGCGACAGGTGCAGCACGGTCGTCACGTAGGTCAGCGTGAACACGACGATCAGCGCATACAGCACGTCCGAGCCGATCCGCGAGCCGCCCGCGATCAGCAGGCGCTTCCAGTGGTACTTCAGCACGTCGGCGACGGGCACTTCGGCGGTTGCGTGCGATTCGGCGAGCTGCTCGAACTGCGGCGTTTCGTCGACGCCGCGCCGCACCCAGAAGCCGAACGCGACGAGCAGCGCGCTGGCCGCGAACGGCACGCGCCAGCCCCACGACAGGAACGTGTCGGACGTGGTCGACAGCGTGACGAGCGCGATGCAGCCAGTGCCGAGCAGCGTGCCGAACGACGGGCCGATCTGCGTCCACGATGCGGACAGCCCGCGCCGTTTCTGGTCGCCGTGCTCGACCGACAGCAGGACCGCGCCGGCCCATTCGCCGCCGAGCGCGACGCCCTGCACGAAGCGCAGCGCGACGAGCAGGATCGGGCTCAGGATGCCGGCCTGCGCATAGGTCGGCAGTGCGCCCATCAGCGCGGTCGTCACGCCCATCAGCACGAGCGTGAGCATCAGCACCGCGCGGCGGCCGATGCGGTCGCCGAGGTTGCCGAACACGAAGCCGCCGAGCGGGCGCGACACGTAGCCGACCGCATAGGTCGAGAACGCGAGGATCGTGCCGGCCAGCGGATCGACCGACGGGAAGAACAGATGGTTGAAAACGAGCGCGGCGAGCGTGTTGTAGATCGTGAAGTCGTACCACTCGAGCGACGTGCCGATCATGCTCGCGGTCGCGAGTCGGCTGTTGCGGACACGGCGGGGCGTGTGGGCGGCGGGCTGGGCGAGAGTGCTCAT > 216 Bcen_3602 PFAM:_General_substrate_transporter;_KEGG:_bur:Bcep18194_B0950_major_facilitator_superfamily_(MFS_1)_transporter major_facilitator_transporter YP_623468.1 11 MSTLNRAAAAQTIDARRAMRRTVAAAALGNGLEFFDFTVYSFFAVLIGRLFFPASSDAGALMLSLATFGVGFVARPLGGVAIGAYADRVGRKPALVLTVALMALGTGIIGFAPTYAQIGIAAPLLIVIGRLLQGFSAGGEVGAATTLLMESGGARRSGELVSWQMASQGGAALAGALVALTLSRWLPSDALQGWGWRVPFVLGLLIGPVGFYLRRHLDDTLPHPAAGAPRVSRRIPWRQVAAGTLLVIGGTSTMYTIVFFLPSFLTLTLGMPASVALLSGCTAGAVMLVGSPFAGRFADRLRRRKPMLRTVCAISTALVLPAFHAMRTWPSVVTVLAVVVVLIGLMTLSSPAGFVMILEALRPEVRATSLGMIYALGVTIFGGFAQLIVSALWRATGSFYAPAWYVLAGGSASLVGLALFREETAR beta_subgroup Burkholderia_cenocepacia_AU_1054 Burkholderia_cenocepacia_AU_1054 NC_008061 728633..729913 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_LiPuma,J.J.,_Konstantinidis,K.,_Tiedje,J.M._and_Richardson,P. NA 0:1281 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000379.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3635680Source_DNA_and_bacteria_available_from_James_M_Tiedje(tiedjej@msu.edu)Contacts:_James_M_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_cenocepacia_AU_1054_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cenocepacia_Q1BPG0_BURCA.gb Pseudomonas_RNA_homology_group_II 107025343 Unpublished NA NC_008061 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1281 2 genomic_DNA NA AU_1054 NA Burkholderia_cepacia_genomovar_IIIb NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 331271 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome_2_of_Burkholderia_cenocepacia_AU_1054 NA NC_008061.1 ATGAGCACCTTGAATCGCGCGGCTGCCGCGCAGACCATCGACGCGCGACGCGCGATGCGGCGGACCGTCGCCGCGGCTGCACTCGGCAACGGACTCGAATTCTTCGACTTCACCGTATATAGCTTCTTTGCTGTACTGATCGGTCGGCTGTTCTTTCCGGCGTCCAGCGATGCGGGTGCGTTGATGCTGTCGCTCGCGACCTTCGGCGTCGGTTTCGTCGCACGGCCGCTCGGCGGCGTCGCGATCGGCGCGTATGCGGACCGCGTCGGGCGCAAGCCCGCGCTGGTGCTGACCGTTGCGCTGATGGCGCTCGGCACCGGCATCATCGGATTCGCGCCGACCTACGCGCAGATCGGCATCGCGGCGCCGCTGCTGATCGTGATCGGCCGACTGCTGCAGGGTTTTTCGGCAGGGGGCGAAGTCGGGGCCGCGACGACGTTGCTGATGGAGTCGGGCGGCGCCCGCCGGAGCGGCGAACTGGTGAGTTGGCAGATGGCCAGCCAGGGCGGTGCGGCGCTCGCCGGCGCGCTCGTCGCGTTGACGTTGTCCCGCTGGCTGCCGTCCGATGCGCTGCAAGGCTGGGGTTGGCGTGTACCGTTCGTGCTCGGCCTGCTGATCGGGCCGGTCGGGTTTTATCTGAGACGCCATCTCGACGACACGCTGCCGCATCCGGCAGCCGGCGCGCCGCGTGTCAGCCGTCGCATTCCCTGGCGGCAGGTCGCGGCCGGCACGTTGCTCGTGATCGGCGGCACGTCGACGATGTATACGATCGTGTTTTTCCTGCCGTCGTTCCTGACGCTGACGCTCGGCATGCCGGCTTCCGTCGCGTTGCTGTCCGGTTGCACGGCGGGCGCGGTGATGCTGGTCGGCTCGCCGTTCGCGGGCCGGTTCGCGGACCGCTTGCGTCGCCGCAAGCCGATGCTGCGAACGGTGTGCGCGATCTCGACGGCGCTGGTGCTACCGGCGTTTCATGCGATGCGCACGTGGCCGTCGGTCGTCACCGTGCTGGCGGTCGTGGTCGTGCTGATCGGCCTGATGACGCTGTCGAGCCCCGCGGGTTTCGTGATGATTCTCGAAGCCTTGCGACCGGAAGTCCGTGCGACGTCGCTCGGGATGATCTATGCGCTGGGCGTGACGATTTTCGGCGGTTTCGCGCAGTTGATCGTCAGCGCGCTGTGGCGGGCGACGGGCAGCTTCTATGCGCCGGCCTGGTACGTGCTCGCCGGCGGGTCGGCCAGTCTCGTCGGTCTGGCGTTGTTTCGCGAGGAAACGGCACGCTGA > 217 Bcen_3101 PFAM:_General_substrate_transporter;_KEGG:_bur:Bcep18194_B0382_major_facilitator_superfamily_(MFS_1)_transporter major_facilitator_transporter YP_622970.1 11 MASTDSLPQAQAPSPSIDPGSISARLDRLPPTRSVWKLVVLLSLGFFFELYDLLYSGYVAPGLVKSGILSATTHGLFGTTGVASFIAALFSGLFIGTIACGFLADRFGRRAIFTWSLLWYTAANVVMAFQDTATGLNFWRFVVGLGLGVEMVTIGTYISELVPKQIRGRAFACEQAVGFVAVPVVAFLAYLLVPHAPLGLDGWRWVVLIGAHGALFVWWIRRELPESPRWLAQQGRVDEADRIMRALEAKVEAEYGRPLPPPAPAEPVPPRGSFRDMWVPPYRSRTIMMTIFNVFQTVGFYGFANWVPTLLIKQGITITSSLMYSSVIALAAPIGPLIGLVIADRFERKSVIVAMAAAIVVCGLLFSQTTVGAFLIVLGIGLTLASNIMSYSFHAYQAELFPTSIRARAVGFVYSWSRFSAIFSSFVIAAVLRGFGTFGVFAFIAGAMVVVMAAIGWMGPRTKGIALETISK beta_subgroup Burkholderia_cenocepacia_AU_1054 Burkholderia_cenocepacia_AU_1054 NC_008061 136824..138242 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_LiPuma,J.J.,_Konstantinidis,K.,_Tiedje,J.M._and_Richardson,P. NA 0:1419 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000379.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3635680Source_DNA_and_bacteria_available_from_James_M_Tiedje(tiedjej@msu.edu)Contacts:_James_M_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_cenocepacia_AU_1054_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cenocepacia_Q1BQV8_BURCA.gb Pseudomonas_RNA_homology_group_II 107025343 Unpublished NA NC_008061 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1419 2 genomic_DNA NA AU_1054 NA Burkholderia_cepacia_genomovar_IIIb NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 331271 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome_2_of_Burkholderia_cenocepacia_AU_1054 NA NC_008061.1 ATGGCCTCAACGGACAGCCTTCCGCAGGCACAAGCCCCATCCCCCTCCATCGACCCCGGCTCCATCTCGGCCCGTCTCGACCGCCTGCCGCCGACGCGCAGCGTCTGGAAGCTCGTCGTGCTGCTGAGCCTCGGCTTCTTCTTCGAACTCTACGACCTGCTGTACAGCGGCTACGTCGCGCCGGGCCTCGTGAAAAGCGGCATCCTGTCCGCGACGACGCACGGCCTGTTCGGCACCACGGGCGTCGCGAGCTTCATCGCCGCGCTGTTCTCCGGCCTTTTCATCGGCACGATCGCGTGCGGCTTCCTCGCCGACCGGTTCGGCCGCCGCGCGATCTTCACGTGGTCGCTGCTGTGGTACACGGCCGCGAACGTCGTGATGGCGTTCCAGGACACCGCGACCGGGCTGAACTTCTGGCGCTTCGTCGTCGGCCTCGGGCTCGGCGTCGAGATGGTGACGATCGGCACCTATATCTCCGAACTCGTGCCGAAGCAGATCCGCGGCCGCGCGTTCGCGTGCGAGCAGGCGGTGGGGTTCGTCGCGGTGCCGGTGGTCGCGTTCCTCGCCTACCTGCTGGTGCCGCACGCGCCGCTCGGCCTCGACGGCTGGCGCTGGGTCGTGCTGATCGGCGCGCATGGCGCGCTGTTCGTGTGGTGGATTCGCCGCGAACTGCCGGAAAGCCCGCGCTGGCTCGCGCAGCAGGGCCGGGTCGACGAGGCCGACCGCATCATGCGCGCGCTGGAGGCGAAGGTCGAAGCCGAATACGGGCGACCGTTGCCGCCGCCCGCGCCGGCCGAACCCGTGCCGCCGCGCGGCAGCTTCCGCGACATGTGGGTGCCGCCGTATCGCAGCCGCACGATCATGATGACGATCTTCAACGTGTTCCAGACGGTCGGCTTCTACGGCTTCGCGAACTGGGTGCCGACGCTGCTGATCAAGCAGGGCATCACGATCACGTCGAGTCTGATGTATTCGAGCGTGATCGCGCTCGCGGCGCCGATCGGCCCGCTGATCGGCCTCGTGATCGCCGACCGCTTCGAGCGCAAGTCGGTGATCGTCGCGATGGCGGCGGCGATCGTCGTCTGCGGGCTGCTGTTCAGCCAGACGACGGTGGGGGCGTTCCTGATCGTGCTCGGCATCGGCCTCACGCTCGCGAGCAACATCATGTCGTACAGCTTCCACGCGTACCAGGCCGAGTTGTTCCCGACGTCGATTCGCGCGCGGGCCGTCGGCTTCGTCTATTCGTGGAGCCGCTTCTCGGCGATCTTCTCGTCGTTCGTGATCGCGGCCGTGCTGCGGGGCTTCGGCACGTTCGGCGTGTTCGCGTTCATCGCGGGCGCGATGGTGGTCGTGATGGCTGCAATCGGATGGATGGGGCCGCGCACGAAGGGCATCGCGCTCGAAACCATCTCGAAGTAG > 218 Bcen_0548 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bur:Bcep18194_A4140_major_facilitator_superfamily_(MFS_1)_transporter general_substrate_transporter YP_620432.1 11 MSAWRGMIRESCRRRVVTRRAAGGQRCPGARGSPCASRIVGFMRRRGIRATRAERENMSTASPAIAQESKVRTVFRVVSGNFLEMYDFMVYGYYASAIAKTYFPSGNAFASLMLSLSVFGAGFLMRPVGAIVLGAYIDHHGRRKGLILTLGLMAIGTLTVAAIPGYATIGVLAPVLVLLGRLLQGFSAGVELGGVSVYLSEIATKGHKGFYTSWQSGSQQVAVVFAAFVGVVLNRALPVEEMTAWGWRIPFLIGCLIVPFLFLIRRSLKETDEFLAKRHRPTMGEIMRSMLDNWGVVVAGMGMVIMTTVSFYMITAYTPTFGKEVLHLSSLDALVVTVCVGISNLVWLPLSGALSDRIGRRPVLIAFTVLTLVSAYPAVLWLVGDPSFLRLLAVELWLSFLYASYNGAMVVALTEVMPADVRTAGFSLAYSLATTIGGFTPAISTLLIHQTGNKAAPGLWLSVAAICGLIATLVLYRTADARNQYKSA beta_subgroup Burkholderia_cenocepacia_AU_1054 Burkholderia_cenocepacia_AU_1054 NC_008060 591570..593036 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_LiPuma,J.J.,_Konstantinidis,K.,_Tiedje,J.M._and_Richardson,P. NA 0:1467 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000378.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3635680Source_DNA_and_bacteria_available_from_James_M_Tiedje(tiedjej@msu.edu)Contacts:_James_M_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_cenocepacia_AU_1054_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cenocepacia_Q1BY46_BURCA.gb Pseudomonas_RNA_homology_group_II 107021562 Unpublished NA NC_008060 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1467 1 genomic_DNA NA AU_1054 NA Burkholderia_cepacia_genomovar_IIIb NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 331271 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome_1_of_Burkholderia_cenocepacia_AU_1054 NA NC_008060.1 ATGTCGGCCTGGCGTGGCATGATTCGCGAATCATGCCGGCGGCGCGTTGTTACGCGCCGTGCCGCCGGCGGGCAGCGATGCCCGGGCGCGCGGGGCTCACCCTGCGCGTCGCGCATCGTCGGATTCATGCGGCGGCGCGGTATTCGCGCCACCCGAGCTGAGCGAGAAAATATGTCCACAGCGTCCCCTGCGATCGCGCAGGAATCGAAAGTCCGCACCGTCTTCCGGGTCGTCAGCGGCAACTTCCTGGAAATGTACGACTTCATGGTCTACGGGTATTACGCGTCGGCCATCGCGAAAACGTACTTTCCGAGCGGCAACGCGTTCGCGTCGCTGATGCTGTCGCTGTCGGTATTCGGCGCGGGTTTCCTGATGCGCCCGGTCGGTGCGATCGTGCTCGGCGCGTACATCGATCATCACGGCCGCCGCAAGGGCCTGATCCTGACGCTCGGGCTGATGGCGATCGGCACGCTCACCGTGGCCGCGATCCCGGGCTATGCGACGATCGGCGTGCTCGCGCCGGTGCTCGTGCTGCTCGGCCGGTTGTTGCAGGGCTTCTCGGCGGGCGTCGAGCTCGGCGGCGTGTCGGTCTACCTGTCGGAGATCGCGACGAAGGGCCACAAGGGGTTCTATACGTCGTGGCAGTCGGGCAGCCAGCAGGTGGCCGTCGTGTTCGCCGCGTTCGTCGGTGTCGTGCTGAACCGCGCGCTGCCGGTCGAGGAAATGACCGCGTGGGGCTGGCGCATTCCGTTCCTGATCGGCTGCCTGATCGTGCCGTTCCTGTTCCTGATCCGCCGGTCGCTGAAGGAGACCGACGAGTTTCTTGCGAAGCGTCACCGGCCGACGATGGGCGAGATCATGCGCTCGATGCTCGACAACTGGGGTGTCGTGGTGGCCGGCATGGGGATGGTGATCATGACGACAGTGTCGTTCTACATGATTACCGCGTACACGCCGACCTTCGGCAAGGAAGTGCTGCACCTGTCGTCGCTCGACGCGCTCGTCGTGACCGTTTGCGTCGGGATCTCGAATCTCGTGTGGTTGCCGCTGTCCGGCGCGCTGTCCGACCGCATCGGTCGCCGCCCGGTGCTGATCGCCTTCACCGTGCTGACGCTGGTGTCGGCTTATCCGGCCGTGCTGTGGCTCGTCGGCGATCCGTCGTTCCTGCGGCTGCTCGCGGTCGAGCTGTGGCTGTCGTTCCTGTACGCGTCGTACAACGGCGCGATGGTCGTCGCGCTGACCGAAGTGATGCCGGCCGACGTGCGTACGGCCGGCTTCTCGCTCGCGTACAGCCTGGCCACGACGATCGGCGGCTTCACGCCGGCGATCTCGACGCTGCTGATCCACCAGACGGGCAACAAGGCGGCGCCGGGGCTGTGGCTGAGCGTGGCCGCGATCTGCGGCCTGATCGCGACGCTCGTGCTGTATCGCACGGCCGATGCGCGCAACCAGTACAAGTCAGCCTGA > 219 BCAL0543 NA major_facilitator_superfamily_protein YP_002229704.1 11 MATIANSTKTIRPERALNRRAVAAAVIGNALEWYDFTVFGFMTVVIAELFFPTSSEYSSLLLTTATFGVAFFMRPIGGIVFGLYADRAGRKAALSLVILLMTAGIFLLAIAPPYAAIGIGGPILIVLGRLLQGFSAGGEFGSSTALLIEAAPFSKRGFYGSWQMASQAAALLIGALVGAAVTRGLSHDALRSWGWRVPFVLGLLIGPIGFYIRRHLADSEAFLHAQQNARRATLGEVFTRHPREVLCGLGSVIALTVTIYVLISYLPTFAVKQLKLPYAESFYAVIIGNLLLMVLSPIAGAWSDRIGRKGLSLWSLVLTLALMYPLFAWLDAAPSIGRLIAVQAVLSVTLAGYYGPFGAMIAELFPANVRSTGLSIAYNVAVMLFGGFGQFIVTWLIKVTGTPLAPTYYVMAGLALSIVAVAFVPARSADLDAPA beta_subgroup Burkholderia_cenocepacia_J2315 Burkholderia_cenocepacia_J2315 NC_011000 595067..596374 Holden,M.T.,_Seth-Smith,H.M.,_Crossman,L.C.,_Sebaihia,M.,_Bentley,S.D.,_Cerdeno-Tarraga,A.M.,_Thomson,N.R.,_Bason,N.,_Quail,M.A.,_Sharp,S.,_Cherevach,I.,_Churcher,C.,_Goodhead,I.,_Hauser,H.,_Holroyd,N.,_Mungall,K.,_Scott,P.,_Walker,D.,_White,B.,_Rose,H.,_Iversen,P.,_Mil-Homens,D.,_Rocha,E.P.,_Fialho,A.M.,_Baldwin,A.,_Dowson,C.,_Barrell,B.G.,_Govan,J.R.,_Vandamme,P.,_Hart,C.A.,_Mahenthiralingam,E._and_Parkhill,J. NA 0:1308 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM747720.COMPLETENESS:_full_length. NA 15-SEP-2010 Burkholderia_cenocepacia_J2315_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cepacia_B4E8I6_BURCJ.gb Pseudomonas_RNA_homology_group_II 206558403 J._Bacteriol._191_(1),_261-277_(2009) NA NC_011000 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 18931103 1308 1 genomic_DNA NA J2315 NA Burkholderia_cepacia_genomovar_IIIb NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 216591 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex The_genome_of_Burkholderia_cenocepacia_J2315,_an_epidemic_pathogen_of_cystic_fibrosis_patients NA NC_011000.1 ATGGCGACGATTGCGAATTCAACGAAAACGATCCGGCCCGAGCGTGCGCTGAACCGGCGCGCGGTGGCGGCCGCCGTGATCGGCAATGCACTCGAGTGGTACGACTTCACGGTGTTCGGCTTCATGACGGTCGTGATCGCCGAACTGTTCTTCCCCACCTCCAGCGAATACTCGTCGCTGCTGCTGACCACCGCGACGTTCGGCGTCGCGTTCTTCATGCGCCCGATCGGCGGCATCGTGTTCGGGCTGTACGCGGACCGCGCGGGCCGCAAGGCCGCGCTGTCGCTCGTGATCCTGCTGATGACGGCCGGCATCTTCCTGCTCGCGATCGCGCCGCCCTATGCGGCGATCGGCATCGGCGGGCCGATCCTGATCGTGCTCGGCCGCCTGCTGCAGGGCTTCTCGGCGGGCGGCGAATTCGGCAGCTCGACCGCGCTGCTGATCGAAGCGGCGCCGTTCTCGAAACGCGGTTTCTACGGCAGCTGGCAGATGGCGAGCCAGGCGGCCGCGCTGCTGATCGGCGCGCTCGTCGGCGCGGCCGTCACGCGCGGGCTGTCGCACGACGCGCTGCGCAGCTGGGGCTGGCGCGTGCCGTTCGTCCTCGGGCTGCTGATCGGCCCGATCGGCTTCTACATCCGCCGCCATCTCGCCGATTCCGAAGCGTTCCTGCATGCGCAGCAGAACGCGCGCCGCGCGACGCTCGGCGAAGTGTTCACGCGCCACCCGCGCGAGGTGCTGTGCGGGCTCGGCTCGGTGATCGCGCTCACCGTGACGATCTACGTGCTGATCAGCTACCTGCCGACCTTCGCGGTGAAGCAGCTGAAGCTGCCGTATGCGGAATCGTTCTACGCGGTGATCATCGGCAACCTGCTGCTGATGGTGCTGTCGCCGATCGCGGGCGCGTGGTCGGACCGCATCGGCCGCAAGGGGCTGTCGCTGTGGTCGCTCGTGCTGACGCTCGCGCTGATGTACCCGCTGTTCGCATGGCTCGACGCGGCGCCGAGCATCGGGCGGCTGATCGCGGTGCAGGCCGTGCTGTCGGTGACGCTGGCAGGCTACTACGGGCCGTTCGGCGCGATGATCGCCGAGCTGTTCCCGGCCAACGTGCGCTCGACCGGGCTGTCGATCGCGTACAACGTCGCGGTGATGCTGTTCGGCGGCTTCGGCCAGTTCATCGTCACGTGGCTGATCAAGGTCACCGGCACGCCGCTCGCGCCGACCTACTACGTGATGGCGGGCCTCGCGCTGTCGATCGTCGCGGTCGCGTTCGTGCCCGCGCGCAGCGCCGACCTCGATGCGCCGGCGTGA > 220 BCAL1252 NA putative_proline/betaine_transporter YP_002230390.1 11 MTLTATHVSPTAVSSPASSSGEAPLAADDITVVDQSLLKRAVSAMAIGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSAQLLATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAATMIMMAVGTFAIGLIPSYASIGIMAPILLLVARLVQGFSTGGEYGGAATFIAEFSTDKRRGFMGSFLEFGTLIGYVLGAGVVALLTASLSQEALLSWGWRVPFLIAGPLGLIGLYIRMKLEETPAFKRQAEEREAQDKAVPKARFRETLLRNWRALLLCVGLVLIFNVTDYMVLSYLPSFMSSTLHFDESHSLVLVLIVMVLMMPMTLYAGRLSDKVGRKPVMLAGCVGLLALSIPSLMLIHAGTTASVFGGLLILGVLLSCFTGVMPSALPALFPTEIRYGALAIGFNVSVSLFGGTTPLVTAWLVDVTHNLMMPAYYMMGAALIGIVSVVALAETARQPLKGSPPAVATRREAHQLALQLREEDDEQEIYGVATPARA beta_subgroup Burkholderia_cenocepacia_J2315 Burkholderia_cenocepacia_J2315 NC_011000 1360757..1362247 Holden,M.T.,_Seth-Smith,H.M.,_Crossman,L.C.,_Sebaihia,M.,_Bentley,S.D.,_Cerdeno-Tarraga,A.M.,_Thomson,N.R.,_Bason,N.,_Quail,M.A.,_Sharp,S.,_Cherevach,I.,_Churcher,C.,_Goodhead,I.,_Hauser,H.,_Holroyd,N.,_Mungall,K.,_Scott,P.,_Walker,D.,_White,B.,_Rose,H.,_Iversen,P.,_Mil-Homens,D.,_Rocha,E.P.,_Fialho,A.M.,_Baldwin,A.,_Dowson,C.,_Barrell,B.G.,_Govan,J.R.,_Vandamme,P.,_Hart,C.A.,_Mahenthiralingam,E._and_Parkhill,J. NA 0:1491 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM747720.COMPLETENESS:_full_length. NA 15-SEP-2010 Burkholderia_cenocepacia_J2315_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cepacia_B4EEI9_BURCJ.gb Pseudomonas_RNA_homology_group_II 206558403 J._Bacteriol._191_(1),_261-277_(2009) NA NC_011000 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 18931103 1491 1 genomic_DNA NA J2315 NA Burkholderia_cepacia_genomovar_IIIb NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 216591 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex The_genome_of_Burkholderia_cenocepacia_J2315,_an_epidemic_pathogen_of_cystic_fibrosis_patients NA NC_011000.1 TCACGCGCGGGCGGGAGTCGCGACGCCGTAGATTTCCTGTTCGTCGTCCTCCTCGCGCAACTGGAGCGCGAGCTGGTGTGCTTCGCGGCGCGTCGCGACGGCGGGCGGCGAGCCCTTCAGCGGCTGGCGCGCGGTTTCGGCGAGTGCGACGACCGACACGATGCCGATCAACGCGGCACCCATCATGTAGTACGCGGGCATCATCAGGTTGTGCGTCACGTCGACGAGCCACGCGGTGACCAGCGGCGTCGTGCCGCCGAACAGCGACACCGACACGTTGAAGCCGATCGCGAGCGCGCCGTAGCGGATCTCGGTCGGGAACAGCGCGGGCAGCGCCGACGGCATCACGCCGGTGAAGCACGACAGCAGCACGCCGAGGATCAGCAGACCGCCGAACACCGACGCGGTGGTGCCCGCATGGATCAGCATCAGCGACGGGATCGACAGCGCCAGCAGGCCCACGCAGCCGGCGAGCATCACCGGCTTGCGGCCGACCTTGTCCGACAGGCGGCCGGCGTACAGCGTCATCGGCATCATCAGCACCATCACGATCAGCACCAGCACGAGGCTGTGCGATTCGTCGAAGTGCAGCGTCGACGACATGAAGCTCGGCAGGTACGACAGCACCATGTAGTCGGTCACGTTGAAGATCAGCACGAGGCCCACGCACAGCAGCAGTGCACGCCAGTTGCGCAGCAGCGTTTCGCGGAAGCGCGCCTTCGGCACGGCCTTGTCCTGCGCTTCGCGCTCTTCGGCCTGGCGCTTGAACGCCGGCGTTTCCTCGAGCTTCATCCGGATGTAGAGACCGATCAGGCCGAGCGGGCCGGCGATCAGGAACGGCACGCGCCAGCCCCACGACAGCAGCGCTTCCTGCGACAGCGACGCGGTGAGCAGCGCGACGACGCCCGCGCCCAGCACATAGCCGATCAGCGTGCCGAATTCGAGGAAGCTGCCCATGAAGCCACGGCGCTTGTCGGTCGAGAACTCGGCGATGAAGGTCGCCGCGCCGCCGTATTCGCCGCCGGTCGAGAAGCCCTGCACGAGGCGGGCGACGAGCAACAGGATCGGGGCCATGATGCCGATCGACGCATAGCTCGGAATCAGGCCGATCGCGAAGGTGCCGACGGCCATCATGATCATCGTCGCGGCGAGCACGCGCTGGCGGCCGATGCGGTCGCCGAGCGGGCCGAACACCATGCCGCCGAGCGGGCGCACGAGGAACGCGGCCGCGAACGTGCCGAAGGTCGCGAGCAGCTGCGCGGACGGGCTGCTGGACGGGAAGAACACCTTGCCGAGCGTGACGGCGATATAGCTGTAGACGCCGAAGTCGAACCATTCCATCGCGTTACCGATGGCCATCGCGCTGACGGCGCGCTTGAGCAGGCTCTGGTCGACGACGGTGATGTCGTCCGCGGCGAGCGGGGCCTCGCCGGACGACGAAGCGGGGGAAGAGACAGCGGTCGGGCTGACGTGTGTTGCGGTCAAGGTCAT > 221 BCAS0367 NA citrate-proton_symporter CAR57299.1 11 MHPSPSTAPDGTAARTSKLGAVLRVTSGNFLEQFDFFLFGFYATSISRVFFPAASEFASLLLTFAVFGAGFLMRPLGAIVLGAYIDEVGRRKGLIVTLSIMASGTILIACVPGYATIGLAAPALVLLGRLLQGFSAGAELGGVSVYLAEMATPGHRGFYTSWQSASQQVAIVIAAALGYLLNHLLTSQEIGAWGWRIPFFIGCAIVPVIFVLRRTLQETDEFKARTHRPRAREVVATMLRNWRTVFAGMLLVAMTTTTFYLITVYTPTFGRAVLKLSTADSLVVTLCVGVSNFFWLPVGGALSDRIGRKPILVAIAVAAIVTSYPALAWLASAPSFGRMLAVLLWLSFFFGMYNGAMVAALTEIMPASVRVAGFSLAFSLATAVFGGFTPAVSTYLIEITGDKAAPGYWLSFAACCGLLATLSLYRKGGTVRRSASPA beta_subgroup Burkholderia_cenocepacia_J2315 Burkholderia_cenocepacia_J2315 AM747722 428096..429412 Holden,M.T.,_Seth-Smith,H.M.,_Crossman,L.C.,_Sebaihia,M.,_Bentley,S.D.,_Cerdeno-Tarraga,A.M.,_Thomson,N.R.,_Bason,N.,_Quail,M.A.,_Sharp,S.,_Cherevach,I.,_Churcher,C.,_Goodhead,I.,_Hauser,H.,_Holroyd,N.,_Mungall,K.,_Scott,P.,_Walker,D.,_White,B.,_Rose,H.,_Iversen,P.,_Mil-Homens,D.,_Rocha,E.P.,_Fialho,A.M.,_Baldwin,A.,_Dowson,C.,_Barrell,B.G.,_Govan,J.R.,_Vandamme,P.,_Hart,C.A.,_Mahenthiralingam,E._and_Parkhill,J. NA 0:1317 NA NA 16-SEP-2010 Burkholderia_cenocepacia_J2315_chromosome_3,_complete_genome. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_cepacia_B4ENB7_BURCJ.gb Pseudomonas_RNA_homology_group_II 190714218 J._Bacteriol._191_(1),_261-277_(2009) NA AM747722 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 18931103 1317 3 genomic_DNA NA J2315 NA Burkholderia_cepacia_genomovar_IIIb NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 216591 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex The_genome_of_Burkholderia_cenocepacia_J2315,_an_epidemic_pathogen_of_cystic_fibrosis_patients NA AM747722.1 TCATGCAGGCGACGCCGAACGCCGCACCGTCCCGCCTTTGCGATACAGCGACAGGGTCGCGAGCAGTCCGCAGCATGCGGCGAAGCTGAGCCAGTATCCGGGTGCGGCCTTGTCGCCCGTGATCTCGATCAGATAGGTCGACACCGCGGGCGTGAAGCCGCCGAAGACCGCCGTCGCGAGGCTGAAGGCCAGCGAGAAACCGGCCACGCGAACGCTGGCGGGCATGATTTCGGTCAGCGCCGCGACCATCGCGCCGTTGTACATGCCGAAGAAGAAGGAGAGCCACAACAGCACGGCCAGCATGCGGCCGAAGCTGGGGGCGGACGCAAGCCACGCGAGCGCGGGATACGACGTCACGATGGCCGCGACTGCGATGGCCACGAGAATCGGCTTGCGTCCGATGCGGTCCGACAGCGCACCGCCGACGGGCAGCCAGAAGAAATTCGACACGCCCACGCACAGCGTGACGACCAGGCTGTCCGCCGTCGACAGTTTCAGTACGGCCCTGCCGAACGTCGGCGTATAGACCGTGATGAGATAGAACGTCGTCGTGGTCATCGCGACCAGCAGCATGCCGGCGAACACGGTGCGCCAGTTCCGCAGCATCGTCGCGACTACCTCGCGTGCACGCGGACGATGGGTGCGCGCCTTGAATTCGTCCGTTTCCTGCAGCGTTCGGCGAAGCACGAAAATGACCGGGACGATCGCGCAACCGATGAAGAACGGGATGCGCCAGCCCCATGCACCGATTTCCTGGCTCGTCAGCAGATGATTCAGCAGATAGCCCAAGGCCGCCGCGATGACGATCGCGACCTGCTGGCTGGCCGACTGCCAGCTCGTATAGAAGCCGCGGTGCCCGGGCGTCGCCATTTCCGCCAGATAGACCGACACGCCGCCCAACTCGGCACCGGCCGAGAAGCCCTGCAGCAGGCGCCCAAGCAATACCAGCGCCGGTGCGGCGAGCCCGATCGTCGCGTACCCCGGCACGCACGCGATCAGGATCGTGCCGCTCGCCATGATCGAGAGCGTCACGATCAGGCCTTTGCGCCTGCCCACTTCGTCGATGTAGGCGCCGAGCACGATCGCGCCGAGCGGGCGCATCAGGAAACCGGCGCCGAAGACGGCAAACGTCAGCAGCAGCGACGCGAACTCGCTTGCCGCCGGAAAGAAGACCCGCGAGATGCTGGTCGCATAGAAGCCGAACAGAAAAAAATCGAACTGCTCGAGAAAATTGCCGCTGGTCACGCGCAGGACCGCGCCGAGCTTCGACGTGCGTGCGGCCGTGCCGTCCGGCGCGGTTGACGGTGAGGGATGCAT > 222 BDAG_04494 NA Major_facilitator_superfamily_(MFS_1)_transporter EAY71654.1 11 MRYVPSWTSVSDASSVADETTSQRGDAPHSLPRVAIAAAALGNATEWFDYGIYAYGLAYISAALFPGNTASATLFALGTFAISFLIRPLGGLFWGPLGDRLGRKRVLALTVLTMSGATLLVGLLPTYATAGWLAPAALIVLRMVQGFSTGGEYGGAATFIAEYAPDSRRGLCGSFLEFATLAGFSLGALLMLGFALLLGDTAMHAWGWRLPFLVAAPLGLVGCYLRSRLEETPVFRELEEQVHRREKTAMSAMPIAQLLVRYAKPLVLLGGLVVALNVVNYVLLAYMPTYMHKELGVSENMSLLIPLIGMLAMMVLLPFAGWLSDHVGRKTMWWFSLVGLFIAAVPMFTLMTHGVLGAFIGFAVLGVLYVPQLATISAMFPAMFPTHVRYAGMAIAYNVSTSLFGGTAPIVNDWLIGKTGNALVPAYYMMAACAVGLVALFAVIETRGCSLRGDTVPGQAG beta_subgroup Burkholderia_dolosa_AUO158 Burkholderia_dolosa_AUO158 CH482382 48120..49505 Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Borowsky,M.L.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Young,S.,_LaButti,K.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_White,J.,_Larson,L.,_Alvarado,L.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Oleary,S.,_LiPuma,J._and_Lory,S. NA 0:1386 NA NA 07-FEB-2007 Burkholderia_dolosa_AUO158_supercont1.3_genomic_scaffold,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_dolosa_A2WI58_9BURK.gb Pseudomonas_RNA_homology_group_II 84788940 Unpublished NA CH482382 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1386 NA genomic_DNA NA AUO158 NA Burkholderia_dolosa_Vermis_et_al._2004 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 350701 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex The_Genome_Sequence_of_Burkholderia_dolosa_(strain_AU0158) NA CH482382.1 TCATCCCGCCTGCCCGGGCACCGTGTCGCCGCGCAGCGAGCATCCGCGCGTCTCGATCACCGCGAACAGCGCGACGAGCCCGACCGCGCACGCGGCCATCATGTAGTACGCGGGAACCAGCGCATTGCCGGTCTTGCCGATCAGCCAGTCGTTGACGATCGGCGCGGTGCCGCCGAACAGCGACGTCGACACGTTGTACGCGATCGCCATCCCCGCATACCGGACGTGCGTCGGGAACATCGCCGGAAACATCGCGGAGATCGTCGCGAGCTGCGGCACGTACAGCACGCCGAGCACCGCGAAGCCGATGAATGCGCCGAGCACGCCGTGCGTCATCAGCGTGAACATCGGTACGGCCGCGATGAACAGCCCGACCAGCGAGAACCACCACATCGTCTTGCGGCCGACGTGGTCCGACAGCCAGCCTGCGAACGGCAGCAGCACCATCATCGCGAGCATGCCGATCAGCGGAATCAGCAGCGACATGTTCTCGCTGACGCCGAGTTCCTTGTGCATGTACGTCGGCATGTACGCGAGCAGCACGTAGTTGACGACGTTCAGCGCGACGACGAGCCCGCCGAGCAGCACCAGCGGCTTCGCGTAGCGCACCAGCAGTTGCGCGATCGGCATCGCGGACATCGCAGTCTTTTCGCGGCGATGCACTTGCTCTTCGAGTTCGCGGAACACCGGCGTTTCCTCCAGACGCGAGCGCAGATAGCAGCCGACGAGGCCGAGCGGCGCCGCGACGAGGAACGGCAGCCGCCAGCCCCACGCATGCATCGCCGTGTCGCCGAGCAGTAGCGCGAAGCCGAGCATCAGCAGTGCGCCCAGCGAGAAGCCGGCGAGCGTCGCGAATTCGAGGAAGCTGCCGCACAGTCCGCGCCGCGAGTCGGGCGCGTATTCGGCGATGAACGTCGCCGCGCCGCCGTACTCGCCGCCGGTCGAGAAGCCCTGCACCATGCGCAGCACGATCAGCGCGGCCGGCGCGAGCCAGCCGGCGGTCGCGTAGGTCGGCAGCAGACCGACGAGCAGCGTCGCGCCGGACATCGTCAGCACGGTCAGCGCGAGCACGCGCTTGCGGCCGAGCCGGTCGCCGAGCGGCCCCCAGAACAGCCCGCCGAGCGGCCGGATCAGGAACGAGATCGCGAACGTGCCGAGCGCGAACAGCGTCGCGCTGGCCGTGTTGCCGGGAAACAGCGCCGCGGAAATGTACGCGAGCCCGTACGCATAGATGCCGTAGTCGAACCATTCGGTCGCGTTGCCGAGCGCGGCGGCCGCGATCGCGACCCGCGGCAGGCTGTGCGGCGCGTCGCCGCGTTGGGACGTCGTCTCGTCGGCAACGGACGAGGCGTCGGAAACGGAAGTCCACGATGGAACGTATCGCAT > 223 bglu_1g30000 NA major_facilitator_family_transporter YP_002912767.1 11 MATVGEHIAHSPMTSDEKRVIFASSLGTVFEWYDFYLAGSLAAYISKSFFSGVNPTAAFIFTLLGFAAGFAVRPFGAIVFGRLGDMVGRKYTFLMTIVIMGLSTFVVGFLPGYASIGIAAPVIFIVMRLLQGLALGGEYGGAATYVAEHAPSNRRGFYTAWIQTTATLGLFLSLLVILGVRLALGEDAFAAWAWRIPFVASILLLGVSVWIRLQLDESPVFLRIKAEGKTSKAPLTEAFGQWKNLKIVILALVGLTAGQAVVWYTGQFYALFFLTQTLKVDGSSANILIAIALLIGTPFFLFFGSLSDRIGRKPIILAGCLIAALSYFPLFKALTHYTNPALETATQKAPISVIANPDECSFQFNPVGTAKFTNSCDVAKAALAKAGLNYDNVAAPAGTLAQIKVGETVIDTYDGKAADAKLKAAAFDKTLAATLKGAGYPAKADPSQINWPMAIVVLTILVIFVTMVYGPIAAMLVEMFPTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAAKGNIYSGLWYPITIALVTFVIGLLFVKETKGSNIYSQD beta_subgroup Burkholderia_glumae_BGR1 Burkholderia_glumae_BGR1 NC_012724 3396906..3398564 Lim,J.,_Lee,T.H.,_Nahm,B.H.,_Choi,Y.D.,_Kim,M._and_Hwang,I. NA 0:1659 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001503.WARNING_On_Jul_14,_2011_this_sequence_was_replaced_bygi:339905954.Source_DNA_and_bacteria_available_from_Ingyu_Hwang(ingyu@snu.ac.kr).COMPLETENESS:_full_length. NA 22-MAR-2011 Burkholderia_glumae_BGR1_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_glumae_C5ACU8_BURGB.gb Pseudomonas_RNA_homology_group_II 238025684 J._Bacteriol._191_(11),_3758-3759_(2009) NA NC_012724 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 19329631 1659 1 genomic_DNA NA BGR1 NA Pseudomonas_glumae_Kurita_and_Tabei_1967_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 626418 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_genome_sequence_of_Burkholderia_glumae_BGR1 NA NC_012724.1 ATGGCGACAGTAGGCGAACACATCGCGCATTCGCCGATGACGAGTGACGAGAAGCGGGTGATCTTCGCGTCGTCGCTCGGCACCGTGTTCGAGTGGTACGACTTTTATCTGGCCGGCTCGCTCGCGGCCTACATCAGCAAGAGCTTCTTTTCCGGCGTCAACCCGACCGCCGCGTTCATCTTCACGCTGCTCGGGTTCGCTGCCGGCTTCGCCGTGCGCCCGTTCGGCGCGATCGTGTTCGGCCGGCTCGGCGACATGGTCGGGCGCAAGTACACGTTCCTGATGACCATCGTGATCATGGGGCTGTCGACCTTCGTGGTGGGCTTCCTGCCCGGCTACGCGTCGATCGGCATTGCCGCGCCGGTGATCTTCATCGTGATGCGGCTGCTGCAGGGGCTCGCGCTGGGCGGCGAGTACGGCGGCGCGGCCACCTACGTGGCCGAGCACGCGCCGTCGAACCGGCGCGGCTTCTATACCGCGTGGATCCAGACCACCGCCACGCTGGGCCTGTTCCTGTCGCTGCTGGTGATTCTCGGCGTGCGCCTGGCGCTCGGCGAGGACGCGTTCGCCGCCTGGGCATGGCGCATCCCGTTCGTCGCCTCGATCCTGCTGCTCGGCGTGTCGGTATGGATTCGGCTGCAACTCGACGAATCGCCGGTGTTCCTGCGCATCAAGGCCGAGGGCAAGACCTCGAAGGCGCCGCTGACCGAGGCGTTCGGCCAGTGGAAGAACCTGAAGATCGTGATCCTCGCGCTGGTCGGGCTGACCGCCGGGCAGGCCGTGGTCTGGTACACGGGCCAGTTCTACGCGCTGTTCTTCCTGACCCAGACGCTGAAGGTGGACGGCAGCAGCGCCAACATCCTGATCGCCATCGCGCTCCTGATCGGCACACCGTTCTTCCTGTTCTTCGGCTCGCTGTCGGACCGCATCGGCCGCAAGCCGATCATCCTGGCCGGCTGCCTGATCGCCGCGCTCTCCTACTTCCCGCTGTTCAAGGCGCTCACGCACTACACGAACCCGGCGCTGGAGACCGCAACGCAGAAGGCGCCGATCAGCGTGATCGCGAACCCGGACGAATGCTCGTTCCAGTTCAACCCGGTGGGCACGGCGAAGTTCACGAACTCGTGCGACGTGGCGAAGGCGGCGCTGGCGAAGGCCGGGCTCAACTACGACAACGTGGCCGCGCCGGCCGGCACGCTGGCGCAGATCAAGGTGGGCGAGACGGTGATCGACACCTATGACGGCAAGGCCGCCGACGCCAAGCTGAAGGCCGCCGCGTTCGACAAGACGCTGGCCGCGACGCTGAAGGGCGCCGGCTACCCGGCGAAGGCCGACCCGTCGCAGATCAACTGGCCGATGGCGATCGTGGTGCTGACGATCCTCGTGATCTTCGTGACGATGGTGTACGGGCCGATCGCGGCGATGCTGGTGGAGATGTTCCCGACGCGGATCCGCTACACGTCGATGTCGCTGCCCTATCACATCGGCAACGGCTGGTTCGGCGGCTTCCTGCCGGCCACGGCGTTCGCGATCGTGGCCGCCAAGGGCAACATCTACTCGGGGCTCTGGTATCCGATCACGATCGCGCTGGTGACGTTCGTGATCGGGCTGCTGTTCGTGAAGGAGACGAAGGGGTCGAACATCTACTCGCAGGATTGA > 224 bglu_1g30140 NA major_facilitator_superfamily_(MFS)_citrate/H_symporter YP_002912781.1 11 MSAVIQVERRDSRARSVFRAVSGNFLEMYDFTVYGYYAAAIAATFFPSGNEFVSLMLAFSVFGAGFLMRPIGAIVLGAYMDRHGRRKGLILSLSLMAVGTMCVAFVPGYQSIGLVAPAIVLFGRLLQGFSAGAELGGVSVYLAEIASRGNRGFFCSWQSASQQVAVVFAASLGVLLNAFVPAQQMTSWGWRVPFLVGCLIVPFLFYIRRTLQESDEFAARKHHPSIGEITRTIVANAGLILAGMGLVIMTTTSFYLITAYTPTFGKVVLKMSSFDALLVTACVGVSNFIWLPISGAVSDRVGRRPVMLAFTILTVFTAYPAVQWLIHAPSFGKLLAVELWLSLLYAWYNGAMVVALTELMPAKVRSTGFSMAYSLATMVGGFTPAISTWLIHATGDKAAPGAWMGAAAVCGMVATLLLYRTKSAREQYRLA beta_subgroup Burkholderia_glumae_BGR1 Burkholderia_glumae_BGR1 NC_012724 3419284..3420579 Lim,J.,_Lee,T.H.,_Nahm,B.H.,_Choi,Y.D.,_Kim,M._and_Hwang,I. NA 0:1296 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001503.WARNING_On_Jul_14,_2011_this_sequence_was_replaced_bygi:339905954.Source_DNA_and_bacteria_available_from_Ingyu_Hwang(ingyu@snu.ac.kr).COMPLETENESS:_full_length. NA 22-MAR-2011 Burkholderia_glumae_BGR1_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_glumae_C5ACW2_BURGB.gb Pseudomonas_RNA_homology_group_II 238025684 J._Bacteriol._191_(11),_3758-3759_(2009) NA NC_012724 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 19329631 1296 1 genomic_DNA NA BGR1 NA Pseudomonas_glumae_Kurita_and_Tabei_1967_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 626418 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_genome_sequence_of_Burkholderia_glumae_BGR1 NA NC_012724.1 TCAGGCGAGCCGATACTGTTCGCGGGCGGATTTCGTCCGGTACAGCAGCAGCGTCGCCACCATGCCGCACACGGCGGCCGCGCCCATCCACGCGCCCGGTGCGGCCTTGTCGCCGGTGGCATGGATCAGCCAGGTGGAGATCGCCGGCGTGAAGCCGCCGACCATCGTGGCCAGACTATAGGCCATCGAGAAGCCGGTGGAGCGCACCTTGGCCGGCATCAGCTCGGTCAGCGCCACCACCATCGCGCCGTTGTACCACGCATAGAGCAGCGAAAGCCACAGCTCCACGGCCAGCAGCTTGCCGAACGACGGCGCGTGGATCAGCCACTGCACCGCCGGATAGGCGGTAAACACGGTCAGGATGGTGAACGCCAGCATCACCGGGCGCCGGCCCACGCGGTCGGACACCGCGCCCGAGATCGGCAGCCAGATGAAGTTCGAGACGCCCACGCAGGCCGTGACGAGCAGCGCGTCGAACGACGACATCTTCAGCACCACCTTGCCGAAGGTGGGCGTATAGGCGGTGATCAGGTAGAACGAGGTGGTGGTCATGATCACCAGGCCCATGCCGGCCAGGATCAGCCCGGCGTTGGCGACGATGGTGCGGGTGATCTCGCCGATGCTGGGATGGTGCTTGCGCGCGGCGAATTCGTCCGACTCCTGCAGCGTGCGGCGGATGTAGAACAGGAACGGCACGATCAGGCAGCCGACCAGGAACGGCACGCGCCAGCCCCAGCTCGTCATCTGCTGGGCGGGCACGAACGCGTTGAGCAGCACGCCGAGCGAGGCCGCGAACACCACCGCCACCTGCTGGCTGGCCGACTGCCACGAGCAGAAGAAGCCGCGGTTGCCGCGCGAGGCGATTTCGGCCAGGTAGACCGACACGCCGCCGAGTTCGGCGCCGGCCGAGAAGCCCTGCAGCAGCCGGCCGAACAGCACGATGGCCGGCGCCACCAGGCCGATGCTCTGGTAGCCGGGCACGAACGCCACGCACATGGTGCCCACCGCCATCAGCGAGAGCGACAGGATCAGCCCCTTGCGGCGGCCGTGGCGGTCCATGTAGGCGCCCAGCACGATCGCGCCGATCGGGCGCATCAGGAAGCCCGCGCCGAACACGGAGAACGCCAGCATCAGCGAAACGAACTCGTTGCCGGACGGGAAGAACGTCGCCGCGATCGCGGCCGCGTAATAGCCGTAGACGGTGAAGTCGTACATCTCCAGGAAATTGCCGCTGACGGCGCGAAACACCGAACGCGCGCGCGAATCGCGCCGCTCGACTTGGATGACTGCTGACAT > 225 bglu_1g33360 NA major_facilitator_superfamily_(MFS_1)_transporter YP_002913102.1 11 MACTAQTQPGGAGKRMTTWATDSTQPQARAPGRRAVIAAVIGNALEWYDFTVFSFMVVVIADLFFPATSEYASLLLTTASFGVAFFMRPVGGIVLGLYADRAGRRAALSLVMVLMTLGIFLIAAAPPYAAIGIAAPLLIVLGRLLQGFSAGGEFGSATALLIEAAPLSRRGFYGSWQMASQSAALLVGALVGAAVTHGLSGAALHAWGWRVPFLIGMLIGPIGYYLRRHLADSEAFLFAKARARRATLGEVLAQHGREVLCGLGSVVALTVTVYVLLSYLPTFAVKQLKLPYGESFYATIVGGVLLTVLSPVAGAWSDRLGRKRLSLASLVATLVLIYPLFLWLDAAPSIGRLVLVQGILAVTLAGYYGPFGAMIAERFPANVRSTGLSLAYNVAVMLFGGFGQTIVTWLIRATGTPLAPTYYVMAGLALSVVAIAAMPRLAPGAEG beta_subgroup Burkholderia_glumae_BGR1 Burkholderia_glumae_BGR1 NC_012724 3795404..3796747 Lim,J.,_Lee,T.H.,_Nahm,B.H.,_Choi,Y.D.,_Kim,M._and_Hwang,I. NA 0:1344 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001503.WARNING_On_Jul_14,_2011_this_sequence_was_replaced_bygi:339905954.Source_DNA_and_bacteria_available_from_Ingyu_Hwang(ingyu@snu.ac.kr).COMPLETENESS:_full_length. NA 22-MAR-2011 Burkholderia_glumae_BGR1_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_glumae_C5AEJ2_BURGB.gb Pseudomonas_RNA_homology_group_II 238025684 J._Bacteriol._191_(11),_3758-3759_(2009) NA NC_012724 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 19329631 1344 1 genomic_DNA NA BGR1 NA Pseudomonas_glumae_Kurita_and_Tabei_1967_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 626418 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_genome_sequence_of_Burkholderia_glumae_BGR1 NA NC_012724.1 TCAGCCCTCGGCGCCGGGCGCGAGGCGCGGCATCGCGGCGATCGCGACCACCGACAGCGCGAGGCCCGCCATCACGTAGTAGGTCGGCGCAAGCGGCGTGCCCGTGGCGCGGATCAGCCAGGTGACGATGGTCTGCCCGAACCCGCCGAACAGCATCACCGCGACGTTGTAAGCAAGCGACAGCCCGGTGGAGCGCACGTTGGCCGGGAACCGCTCGGCGATCATCGCGCCGAACGGCCCGTAGTAGCCCGCCAGCGTGACGGCGAGGATGCCCTGCACGAGCACCAGCCGGCCGATGCTCGGCGCCGCGTCCAGCCAGAGAAAGAGCGGATAGATCAGGACCAGCGTCGCCACCAGCGAGGCGAGCGACAGCCGCTTGCGCCCGAGGCGGTCCGACCAGGCGCCCGCCACCGGCGAGAGCACGGTCAGCAGCACGCCGCCCACGATCGTCGCGTAGAACGACTCGCCGTAGGGCAGCTTCAGCTGCTTGACGGCGAAGGTCGGCAGATAGCTGAGCAGCACGTAGACCGTCACCGTCAGCGCGACCACCGAGCCGAGCCCGCAGAGCACCTCGCGGCCGTGCTGCGCGAGCACCTCGCCGAGCGTCGCGCGCCGCGCGCGCGCCTTGGCGAACAGGAACGCCTCGGAGTCGGCCAGATGGCGGCGCAGGTAATAGCCGATCGGGCCGATCAGCATCCCGATCAGGAACGGCACGCGCCAGCCCCAGGCGTGCAGCGCGGCGCCCGACAGCCCGTGCGTGACGGCCGCGCCCACCAGCGCGCCGACCAGCAGCGCCGCCGACTGGCTCGCCATCTGCCAGCTGCCGTAGAAGCCGCGGCGCGAGAGCGGCGCCGCCTCGATCAGCAGCGCCGTCGCGCTGCCGAACTCGCCGCCCGCCGAGAAGCCCTGCAGCAGCCTGCCGAGCACGATCAGCAGCGGGGCGGCGATGCCGATCGCCGCGTAGGGCGGCGCGGCCGCGATCAGGAAGATGCCGAGCGTCATCAGCACCATCACCAGCGAGAGCGCGGCCCTGCGGCCCGCGCGGTCGGCGTAGAGGCCCAGCACGATGCCGCCGACCGGACGCATGAAGAACGCCACGCCGAAGCTGGCCGTGGTCAGCAGCAGCGACGCGTATTCGCTGGTGGCCGGGAAGAACAGGTCGGCGATCACCACCACCATGAAGCTGAACACGGTGAAGTCGTACCACTCGAGCGCGTTGCCGATCACCGCGGCGATCACCGCGCGGCGCCCCGGTGCGCGCGCCTGCGGTTGCGTCGAATCCGTCGCCCATGTCGTCATGCGTTTGCCAGCCCCGCCCGGTTGCGTCTGCGCCGTGCACGCCAT > 226 bglu_2g13840 NA hypothetical_protein YP_002908979.1 11 MPFDTSLPRRLRGVGPACALGLALAGGPAAAAQAAGPASAPHAYQPHLRPVARIAATRMRIDTPAGSAQFPLYLSRDWSQPLPGVTRAVIVIHGKLRNADRYFRLAEAARAAAREQGAAAADQAGTLLVAPQFLATLDLAGRDAPAALLRWDANGWMAGDDAVSPVPLSSYAVLDAIVARLADRRRFPNLKTVVLAGHSGGGQVVQRYAVAARETGALSREGIALRYVVSSPSSYAYFDAERPGAHGKPAAFDAAACPGFDDWKYGMAKRPPYLADRSAAQLEAAYAARRVTYLVGGNDDDPRQRALDRSCPAEAQGPQRLARAEAYFGYLRARHPEGLNQRLQVVPGVGHDGAKMLGSACALAAIYDTAACGS beta_subgroup Burkholderia_glumae_BGR1 Burkholderia_glumae_BGR1 NC_012721 1771582..1772952 Lim,J.,_Lee,T.H.,_Nahm,B.H.,_Choi,Y.D.,_Kim,M._and_Hwang,I. NA 1367:>1371 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001504.WARNING_On_Jul_8,_2011_this_sequence_was_replaced_bygi:339717964.Source_DNA_and_bacteria_available_from_Ingyu_Hwang(ingyu@snu.ac.kr).COMPLETENESS:_full_length. NA 31-MAR-2011 Burkholderia_glumae_BGR1_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_glumae_C5AIL3_BURGB.gb Pseudomonas_RNA_homology_group_II 238023501 J._Bacteriol._191_(11),_3758-3759_(2009) NA NC_012721 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 19329631 1371 2 genomic_DNA NA BGR1 NA Pseudomonas_glumae_Kurita_and_Tabei_1967_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 626418 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_genome_sequence_of_Burkholderia_glumae_BGR1 NA NC_012721.1 TCAAGCGGGCGTCCTCGGCGTGACGGGTGCCTCGACGCCGAGCCCGGGGTGCCCGCGACGGCACGACCCGACCAGCGCCAGCGAGACGAAACCGGCAAAGATCAGATAGAAGGCGGGTGTCAGGCTGCTGCCCGTCAGCGAGATCAGCCAGGTGACGGTAAACGGCGCCAGGCCGCCGAACAGCGTGACCGAGAGGTTGTACGAGAGCGCGACGCCGGCCGAGCGGCTCCGCACCGGGAACAGCGTCGCGAGCATGCCGGGGTGCGCGCCCGACATCGCCGCGAGAAACACCGTCGCGACGAGTTGCGCGACGAGCAGGCGCGAGGCCGACGGCTCCGCGACCACGAACAGGTAGAGCGGATACGCGCAGATCATCCAGGCGATGGTGACCGCGTAGAACAGCCGGTACGCGCCGAAGCGGTCCGCCAGGCGCCCCGCCAGCGGGAACAGGAACAGGTTCAGCAGGCCCGAGAGGAACGCGCCGCGCAGCGCGACCTGCAGCGGCAGGTGCAGCTGGCGCTCGACGTAGACGGCGAGGTACGAGTGCCAGACGTAGTTGGTGGCCGCCCCCACCGCGATCACGCCCATCGCGCAGAGCGCGGCGCGGCCGTTGTCGCGGAAGAACGCGGCAAGCGGCACCGTCGCGCGCGGGTCCGGCTGCGCGCGGCGCAATTGCTGGAACTCGGGCGACTCGGCCACCCGGTGGCGGATGTAGAAGCCGAGCGGGCCGGCCAGCGCGCCGCACAGGAACGGCACGCGCCAGCCCCATGCCGCCAGCGAGTCGTGCGAGAGCCGCGTGGTGAGCAGGTAGCCGGCGCCCGACGAGAGCAGCAGCGCGAACGACTGCGCCGTCATGTTGAAGCTGCCGTAGAACATCCTGCGGCCGGGCGGCGCGTACTCGACCAGCATCGCCGATGCGGTCGCGAACTGGCCGCCCACCGAGAGCCCCTGCAGCACGCGCGCGAGGATCACCAGCGCGGGCGCCGCGTAGCCGATCTGCGCGTAGCCGGGCGTGAGGCCCATCAGCAGCGTGCTGGCCGCCATCGAGATGATCAGCAGCGACAGCGCGCGGCTGCGTCCCGCGCGGTCGGCGTAGACGCCGAGCAGGATGCCGCCGATCGGCCGCACCACGAAGCCGATCGCGAAGGTCGCGAGCGTCAGCAGCAGCGAGACGAGCGCGTTGCCGGCCGGGAAGAACACCTGCGCGATGATCTTCGAGAAATAGCCGTAGATCAGGAAATCGAACCATTCCAGGCCGTTGCCGAGCACCGAGGCGAAGATCGCGCGGCGCACCATCGCCGGCGACAGACGCGCCGCGGCCGCGTCCGGCCGCGCTGCCTGGTGTGCCGGGGCGGGCGTGGCGCGGCTCAT > 227 BgramDRAFT_0808 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bxe:Bxe_B0186_major_facilitator_superfamily_(MFS)_transporter major_facilitator_superfamily_MFS_1 EDT12244.1 11 MRTIDNTIGDRSAAGVSGPVTRGSIIARLERLPKNAMQVRARILIGLATFFDGFDVIAIAATLPVLIAKWHLTPWEIGFLIGSGSVGQLIGAFVFPWYAERHGRVRAIALSSGIIGVTSIACGFAPTFAAFVVLRVIQGLGLGGELPVAATYINEISRAHGRGRFVLLYEIVFPVGLLASNALGAWIVPRFGWQAMYFIGGMPLILFFVLRKLVPESPRWLAERERMADADAAVHAFERAAKGPLPPVVHSAEFEAMANRHPKRRMGDLFGPAYLKRTLAVAMLWITCGFIQYGLSTWLPTIYRTIYHAPLQLALNLAVAASVLGVVGSLTCALLVDKVGRKPIINLSFLACAVSLLMAGVLHDSSVYVVATCCALSLGFLACGFITAYVYTPELYPTSIRAMGCGVGGAWLKVAAIFAPAIVSKTMIGGNLQIAFYILAAVPFLAAVAVHFLGIETKGKVLEQLEA beta_subgroup Burkholderia_graminis_C4D1M Burkholderia_graminis_C4D1M ABLD01000002 204662..206065 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Larimer,F.,_Land,M.L.,_Hauser,L.,_Tiedje,J._and_Richardson,P. NA 0:1404 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4024118Source_DNA_and_Bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Source_DNA_available_from_James_Tiedje_(tiedjej@msu.edu)Bacteria_available_from_BBBContacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376). NA 17-MAR-2008 Burkholderia_graminis_C4D1M_ctg37,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_graminis_B1FUT9_9BURK.gb Pseudomonas_RNA_homology_group_II 170143881 Unpublished NA ABLD01000002 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1404 NA genomic_DNA NA C4D1M NA Burkholderia_graminis_Viallard_et_al._1998 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 396598 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Sequencing_of_the_draft_genome_and_assembly_of_Burkholderia_graminis_C4D1M NA ABLD01000002.1 TCAAGCCTCCAACTGCTCGAGCACCTTGCCCTTGGTTTCAATCCCGAGAAAATGCACCGCCACCGCCGCAAGAAACGGCACGGCCGCGAGAATATAAAACGCGATCTGCAAATTACCGCCGATCATCGTCTTCGACACAATCGCCGGCGCGAAAATCGCCGCGACTTTCAGCCATGCGCCGCCGACGCCGCAACCCATCGCGCGGATGCTCGTCGGGTACAGTTCCGGCGTGTACACATAAGCGGTGATGAAGCCGCACGCGAGAAAGCCGAGCGACAACGCACAGCACGTCGCCACCACATACACCGACGAATCGTGCAACACGCCCGCCATCAGCAGCGAAACTGCGCACGCCAGAAACGACAGATTAATGATCGGCTTACGCCCCACCTTGTCCACCAGCAGCGCGCAAGTCAGCGACCCCACCACGCCCAGCACCGAAGCCGCCACCGCAAGGTTCAACGCCAGTTGCAACGGCGCGTGATAGATCGTGCGATAGATGGTCGGCAGCCACGTCGACAGACCATACTGAATGAAGCCGCAGGTGATCCACAGCATCGCAACGGCCAACGTGCGCTTCAAATACGCCGGACCGAACAGATCGCCCATGCGGCGCTTCGGATGACGATTCGCCATCGCTTCGAATTCGGCCGAATGCACGACCGGCGGCAACGGACCCTTCGCGGCGCGTTCAAACGCATGGACTGCTGCATCGGCATCGGCCATGCGTTCGCGTTCAGCGAGCCAGCGCGGCGACTCAGGCACGAGCTTGCGCAGCACGAAGAACAGAATCAACGGCATGCCGCCGATAAAATACATCGCCTGCCAGCCGAAACGCGGCACGATCCACGCGCCGAGCGCATTTGAAGCCAGCAGCCCAACCGGAAAAACAATTTCATACAACAGCACGAAACGACCACGCCCATGCGCACGGCTAATCTCGTTGATGTAAGTCGCGGCAACCGGCAATTCGCCGCCGAGTCCCAAGCCCTGAATCACGCGCAACACGACAAATGCCGCGAACGTCGGCGCAAATCCGCACGCAATGCTCGTGACACCGATAATCCCCGAGCTCAGCGCAATCGCTCGAACGCGCCCATGACGCTCGGCATACCACGGGAACACAAACGCACCGATCAGTTGCCCGACCGACCCCGAGCCGATCAGAAAGCCGATTTCCCACGGCGTCAGATGCCACTTCGCGATCAGCACCGGCAGCGTGGCCGCAATCGCGATCACGTCGAAGCCGTCGAAGAACGTGGCGAGCCCGATCAGAATCCGCGCACGCACCTGCATCGCGTTCTTCGGCAGTCGCTCGAGCCGCGCGATGATCGAGCCTCTCGTGACAGGGCCCGAAACGCCTGCGGCGCTGCGGTCTCCAATGGTGTTGTCGATGGTTCTCAT > 228 BgramDRAFT_2901 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bxe:Bxe_A2954_major_facilitator_superfamily_(MFS)_metabolite_transporter major_facilitator_superfamily_MFS_1 EDT10095.1 11 MSTLALSQSRLTKTRVITATTIGTALEFYDFTIYSFFAIQIGQLFFPGASPVNQFLLSIGVFGVGFVVRPLGGVVIGAYADRAGRKNAMVLTIMLMALSCAMIACAPTYAVAGFAAPLIVLAARLIQGFAAGGEFGPGTTLLVEYATDNTRAFFASWNFAATAAGLVLGALVATLVNVLLPKQAVLEWGWRIPFVLGIVAAPAGMLIRRRLEETLTARKPGEAAPSGALKAALTTHLKLTILGTFAELGGSVSVYITAFFLPSHAVRALHLSSTSAVISGIVSSLALFVAAPLAGMLADRYTRKRVLVISRVVMLLLVYPAFAFLSAHPSMTALCIVSALLAVFVSGQIVPVLVMIPELFPKHVRATGIALTYVVSASFFGGFSPFIASWLVARTGNPLAPAWYVAAACAISLVPVIWLKDRTGEALG beta_subgroup Burkholderia_graminis_C4D1M Burkholderia_graminis_C4D1M ABLD01000007 29645..30931 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Larimer,F.,_Land,M.L.,_Hauser,L.,_Tiedje,J._and_Richardson,P. NA 0:1287 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4024118Source_DNA_and_Bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Source_DNA_available_from_James_Tiedje_(tiedjej@msu.edu)Bacteria_available_from_BBBContacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376). NA 17-MAR-2008 Burkholderia_graminis_C4D1M_ctg36,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_graminis_B1G0L4_9BURK.gb Pseudomonas_RNA_homology_group_II 170141903 Unpublished NA ABLD01000007 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1287 NA genomic_DNA NA C4D1M NA Burkholderia_graminis_Viallard_et_al._1998 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 396598 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Sequencing_of_the_draft_genome_and_assembly_of_Burkholderia_graminis_C4D1M NA ABLD01000007.1 GTGTCTACCCTTGCGCTTAGTCAGTCCCGTTTGACGAAGACCCGCGTCATTACTGCCACGACCATCGGCACGGCGCTCGAATTCTACGACTTCACGATCTACAGCTTCTTCGCGATCCAGATCGGGCAGTTGTTCTTTCCGGGCGCGTCGCCCGTCAATCAGTTTTTGCTGTCGATCGGCGTATTCGGCGTGGGCTTCGTGGTGCGGCCGCTCGGCGGCGTCGTGATCGGCGCGTATGCGGATCGCGCGGGCCGCAAGAACGCGATGGTCCTCACGATCATGCTGATGGCGCTTAGCTGCGCGATGATCGCGTGCGCGCCCACTTACGCGGTCGCCGGCTTCGCCGCGCCGCTCATCGTGCTCGCCGCGCGGTTGATACAAGGCTTCGCGGCGGGCGGCGAGTTCGGACCGGGCACGACGCTGCTCGTCGAATATGCCACCGACAACACGCGCGCGTTCTTCGCGAGCTGGAACTTCGCGGCGACCGCGGCAGGCCTCGTGCTCGGCGCGCTGGTCGCGACGCTCGTCAACGTGCTGCTGCCGAAGCAGGCCGTGCTCGAATGGGGCTGGCGGATTCCGTTCGTGCTCGGCATCGTCGCGGCGCCGGCCGGCATGCTGATCCGCCGGCGCCTCGAAGAAACGCTGACCGCGCGCAAGCCCGGCGAAGCCGCGCCGAGCGGCGCGCTGAAGGCCGCGCTGACCACGCATCTGAAGCTGACGATTCTCGGCACTTTCGCCGAGTTGGGCGGCTCCGTGTCGGTCTACATCACCGCCTTTTTTCTGCCGAGTCATGCGGTGCGCGCGCTGCATCTTTCGTCGACGTCCGCGGTGATCTCCGGTATCGTCAGTTCGCTTGCGCTGTTCGTCGCCGCGCCGCTCGCCGGCATGCTCGCGGACCGCTACACCCGCAAGCGCGTGCTCGTGATTTCGCGCGTCGTGATGCTGTTGCTCGTGTATCCGGCGTTTGCATTCCTGAGCGCGCATCCGTCGATGACGGCGCTTTGCATCGTGTCCGCGCTGCTCGCCGTGTTCGTGTCCGGGCAGATCGTGCCCGTGCTCGTGATGATCCCGGAACTGTTCCCGAAGCATGTGCGTGCAACCGGAATTGCATTGACGTATGTTGTGAGCGCATCGTTTTTCGGCGGCTTCTCGCCGTTTATCGCAAGCTGGCTGGTCGCGCGCACCGGCAATCCGCTCGCGCCGGCCTGGTATGTGGCCGCCGCATGCGCGATTTCGCTCGTGCCGGTAATCTGGCTGAAGGACCGCACCGGCGAAGCGCTCGGCTGA > 229 BgramDRAFT_4072 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_azc:AZC_1489_general_substrate_transporter major_facilitator_superfamily_MFS_1 EDT09020.1 11 MNSSSSHAAPFDTTTPATLRAEQRRAIGAGMVGYILEWFDFGVYGFLAAIIAKNFFPSTDEFTSLLASFGVFGVGFVARPIGSVVLGRIADVRGRHITLATTMILMALSTVAIGFLPTYESIGIGAPVLLVAARLVQGFAAGGEWGTAAAFLVEWGGANRRGFFGAFQQSSIAAGLLLGSLVAAILSSALDSNALASWGWRIPFFLGALLGPVGMYVRRRVQESPSFESEAARAHTLSGVQFAKSLFHAFSFVIFWAVSSYMVAVYMPTFANKYAHISRTQALWTSTASLATVMIVAPLMGALSDRIGRKPVLLASCVFFALLSYPLYAFIVSGIGFMTFFWTQLLMNVVFTMYSGAGPAALAEMFPTRVRSTGVAFGGALATILGGFSPFLTTWTIASTGASANAGWLLAGSALFTLPALVVMKDRAREKSI beta_subgroup Burkholderia_graminis_C4D1M Burkholderia_graminis_C4D1M ABLD01000013 19966..21267 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Larimer,F.,_Land,M.L.,_Hauser,L.,_Tiedje,J._and_Richardson,P. NA 0:1302 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4024118Source_DNA_and_Bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Source_DNA_available_from_James_Tiedje_(tiedjej@msu.edu)Bacteria_available_from_BBBContacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376). NA 17-MAR-2008 Burkholderia_graminis_C4D1M_ctg49,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_graminis_B1G3Y2_9BURK.gb Pseudomonas_RNA_homology_group_II 170140832 Unpublished NA ABLD01000013 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1302 NA genomic_DNA NA C4D1M NA Burkholderia_graminis_Viallard_et_al._1998 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 396598 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Sequencing_of_the_draft_genome_and_assembly_of_Burkholderia_graminis_C4D1M NA ABLD01000013.1 TCAAATCGACTTTTCGCGCGCGCGGTCTTTCATCACAACCAGCGCGGGAAGCGTGAACAACGCGCTGCCCGCGAGCAGCCAACCCGCGTTCGCGCTCGCGCCCGTCGAGGCGATCGTCCACGTGGTGAGGAACGGCGAAAAGCCGCCGAGGATGGTCGCAAGCGCGCCGCCGAACGCCACGCCGGTGGAGCGCACGCGCGTCGGGAACATCTCCGCGAGCGCCGCCGGGCCCGCACCCGAATACATCGTGAACACCACGTTCATGAGCAATTGCGTCCAGAAGAACGTCATGAAACCGATGCCCGAGACAATGAACGCATAGAGCGGATACGAAAGCAGCGCGAAGAACACGCAACTCGCGAGCAGCACAGGCTTGCGGCCGATCCGGTCGGACAGCGCGCCCATGAGCGGCGCGACGATCATCACCGTGGCGAGCGAGGCCGTGCTGGTCCAGAGTGCCTGCGTGCGCGAGATATGCGCATACTTGTTCGCGAACGTGGGCATATACACCGCCACCATGTACGAACTCACGGCCCAGAAAATCACGAACGAAAACGCGTGAAACAGCGACTTCGCGAATTGCACGCCGCTCAATGTGTGAGCGCGCGCCGCCTCGCTCTCGAACGACGGCGACTCCTGCACGCGACGGCGCACGTACATACCCACCGGCCCGAGCAATGCGCCGAGAAAGAACGGAATTCGCCAACCCCACGAAGCGAGTGCGTTCGAATCGAGCGCGCTGCTAAGTATGGCCGCGACGAGCGAGCCCAGCAGCAGGCCCGCTGCGATGCTCGATTGCTGAAACGCGCCGAAGAAGCCGCGCCGGTTCGCGCCGCCCCACTCCACCAGAAACGCCGCTGCCGTGCCCCACTCGCCACCCGCCGCGAAACCCTGCACGAGACGCGCCGCCACCAGCAGCACGGGCGCCCCGATGCCGATGCTCTCGTACGTGGGCAGAAAGCCAATCGCAACAGTACTGAGCGCCATCAGGATCATGGTGGTGGCGAGCGTGATGTGGCGGCCGCGCACGTCGGCGATTCGGCCGAGCACGACACTGCCGATGGGCCGCGCGACGAAGCCCACGCCGAACACCCCGAATGAGGCCAACAACGAGGTGAATTCGTCTGTCGACGGGAAAAAGTTCTTCGCGATGATCGCCGCGAGAAAACCGTACACCCCGAAATCGAACCACTCGAGGATATAGCCGACCATACCTGCGCCGATGGCGCGCCGCTGCTCGGCTCGCAGCGTAGCGGGCGTGGTGGTATCGAAGGGAGCTGCGTGAGAGGAGCTGCTGTTCAT > 230 BMA10229_0177 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter YP_001024002.1 11 MPAAPAVPSRAARASAAARLERLPFSGYHKLIFVIIAIAFFFDSVDLGTMTFVLGSIKREFGLSTATAGLVASASFFGMVLGAAVAGLLADRFGRRPVFQWSMVLWGAASYLCSTAQSVDALIVYRVLLGIGMGMEFPVAQTLLSEFVPAAKRGRLIALMDGFWPLGFITAGVVSYFVLPLFGWRTVFALLALPAVFVLVVRRLVPESPRWLEHRGRLAEAGRVLAHVEAKVMKSARVASLPAPSRLAEPACAQGRGAFGEIWSAAYRRRTTMVWLLWFFALLGFYGLTSWLGALLQQAGFAVTQSVFYTVLISLGGIPGFLCAAWLVERWGRKPTCIASLVGGGAMAYVYGQSALFGGSVTLLVGTGLAMQFFLFGMWAVLYTYTPELYGTGARATGSGFASAIGRVGSLIGPYAVGIVLPVFGQGGVFTLGALSFVVAALAVGVLGIETQGLALEALASTHAADDDARDPAGAAAN beta_subgroup Burkholderia_mallei_NCTC_10229 Burkholderia_mallei_NCTC_10229 NC_008835 157484..158920 NA NA 0:1437 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000545.The_bacteria_and_source_DNA_are_available_from_David_DeShazer(David.DeShazer@det.amedd.army.mil).COMPLETENESS:_full_length. NA 26-JAN-2012 Burkholderia_mallei_NCTC_10229_chromosome_II,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_A2RWD3_BURM9.gb Pseudomonas_RNA_homology_group_II 124381141 Submitted_(01-FEB-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_008835 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1437 II genomic_DNA NA NCTC_10229 NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 412022 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_008835.1 TCAGTTCGCCGCCGCGCCCGCGGGATCGCGCGCATCGTCGTCGGCGGCATGCGTCGACGCGAGCGCCTCGAGCGCCAGGCCTTGGGTCTCGATTCCCAGCACGCCCACCGCCAGTGCCGCGACGACGAACGACAGCGCGCCGAGCGTGAACACGCCCCCTTGTCCGAATACGGGCAGCACGATGCCGACCGCGTACGGCCCGATCAGCGAGCCGACCCGCCCGATCGCCGACGCGAAACCCGAGCCGGTTGCGCGCGCGCCCGTGCCGTAGAGCTCCGGCGTGTACGTGTAGAGCACCGCCCACATCCCGAACAGGAAGAACTGCATCGCGAGTCCGGTGCCGACGAGCAGCGTCACGCTGCCGCCGAACAGCGCGCTCTGGCCGTACACGTAGGCCATCGCGCCCCCGCCGACGAGCGACGCGATGCAGGTCGGCTTGCGGCCCCAGCGCTCGACGAGCCACGCCGCGCACAGGAAGCCCGGAATGCCGCCGAGCGAGATCAGCACCGTATAGAACACGGATTGCGTGACGGCGAAGCCGGCTTGCTGCAGGAGCGCGCCGAGCCACGACGTGAGCCCGTAGAAACCGAGCAGCGCGAAAAACCACAGCAGCCAGACCATCGTCGTGCGGCGGCGGTAGGCGGCGCTCCAGATCTCGCCGAACGCACCGCGGCCCTGCGCGCAAGCCGGCTCGGCAAGCCGCGACGGCGCGGGCAGGCTCGCCACGCGCGCGGACTTCATGACCTTTGCCTCGACGTGCGCGAGCACGCGCCCGGCCTCGGCGAGCCGGCCGCGATGCTCGAGCCAGCGCGGCGATTCCGGCACGAGCCGGCGCACGACGAGCACGAACACGGCGGGCAGCGCGAGCAGCGCGAACACGGTGCGCCAGCCGAACAGCGGCAGCACGAAGTACGACACGACGCCGGCGGTGATGAAGCCGAGCGGCCAGAAGCCGTCCATCAGCGCGATCAGCCGGCCGCGCTTCGCGGCGGGAACGAACTCGGACAGCAGCGTTTGCGCGACCGGAAATTCCATCCCCATGCCGATGCCGAGCAGCACGCGATAGACGATCAGCGCGTCGACGCTCTGCGCGGTCGAGCACAGGTACGACGCCGCGCCCCATAGCACCATGCTCCACTGGAAGACGGGCCGCCGGCCGAAGCGGTCCGCGAGCAGCCCCGCGACCGCCGCGCCGAGCACCATGCCGAAGAAGCTCGCGCTCGCGACGAGGCCGGCTGTCGCCGTCGACAGGCCGAACTCCCGCTTGATGGAGCCGAGCACGAAAGTCATCGTGCCGAGGTCGACCGAATCGAAGAAGAACGCGATCGCGATGATCACGAAGATGAGCTTGTGGTATCCGGAAAACGGCAATCGTTCGAGGCGGGCGGCGGCGCTGGCGCGTGCGGCGCGCGACGGGACGGCGGGAGCGGCTGGCAT > 231 BMA10229_A0600 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 proline/betaine_transporter YP_001026595.1 11 MRPFTLATDPRPIASGTPGKPWRTAPRRAVRPPSQEFSTLTATPAPSSSSSAPTEGALPAAAHEITVVDQGLLKRAVGAMALGNAMEWFDFGVYSYIAVTLGQVFFPSSSPSAQLLATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAMTMIMMAVGTFAIGLIPSYDSIGLLAPVLLLVARLVQGFSTGGEYGGAATFIAEFSTDKRRGFMGSFLEFGTLIGYVMGAGVVALLTASLSHDALLSWGWRVPFLIAGPLGLIGLYIRMRLEETPAFKRQAEAREAQDKAVPKAHFRRQLARHWRALLLCVGLVLIFNVTDYMALSYLPSYLSSTLHFDEAHGLVLILIVMVLMMPMTLATGRLSDAVGRKPVMLAGCVGLFALAIPALLLIRTGETALVFGGLLILGALLSCFTGVMPSALPALFPTEIRYGALAIGFNVSVSLFGGTTPLAAAWLVDATGNLMMPAYYLMGAAVIGAISVLALPESARQPLKGSPPAVASHREAHALAREIKRREAAERDDSGYPSAAALRA beta_subgroup Burkholderia_mallei_NCTC_10229 Burkholderia_mallei_NCTC_10229 NC_008836 623745..625349 NA NA 0:1605 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000546.The_bacteria_and_source_DNA_are_available_from_David_DeShazer(David.DeShazer@det.amedd.army.mil).COMPLETENESS:_full_length. NA 26-JAN-2012 Burkholderia_mallei_NCTC_10229_chromosome_chromosome_I,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_A2S3S6_BURM9.gb Pseudomonas_RNA_homology_group_II 124383319 Submitted_(01-FEB-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_008836 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1605 I genomic_DNA NA NCTC_10229 NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 412022 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_008836.1 ATGCGCCCTTTCACGCTCGCGACCGACCCTCGTCCGATCGCGAGCGGCACTCCCGGCAAACCGTGGCGAACCGCGCCCCGTCGCGCGGTTCGGCCGCCGTCACAGGAGTTTTCGACCTTGACTGCAACACCCGCCCCCTCCAGTTCGTCCAGCGCGCCCACCGAAGGCGCGCTTCCCGCCGCTGCGCACGAGATCACCGTCGTCGATCAGGGCCTGCTCAAGCGCGCCGTCGGCGCGATGGCGCTCGGCAACGCGATGGAATGGTTCGACTTCGGCGTCTACAGCTACATCGCCGTCACGCTCGGCCAGGTGTTCTTCCCGTCGAGCAGCCCGTCCGCGCAGTTGCTCGCGACGTTCGGCACGTTCGCCGCCGCCTTCCTCGTGCGCCCGCTCGGCGGGATGGTGTTCGGGCCGCTCGGCGATCGCATCGGCCGCCAGCGCGTGCTCGCGATGACGATGATCATGATGGCGGTCGGCACGTTCGCGATCGGCCTGATCCCGAGCTACGACTCGATCGGCCTCCTCGCGCCCGTGCTGCTCCTCGTCGCGCGTCTCGTGCAAGGCTTCTCGACGGGCGGCGAGTACGGCGGCGCGGCAACCTTCATCGCCGAGTTCTCGACCGACAAGCGCCGCGGCTTCATGGGCAGCTTCCTCGAGTTCGGCACGCTGATCGGCTATGTGATGGGCGCGGGCGTCGTCGCGCTGCTGACGGCTTCGCTGTCGCACGACGCGCTGCTGTCGTGGGGCTGGCGCGTGCCGTTCCTGATCGCCGGCCCGCTCGGCCTGATCGGCCTGTACATCCGGATGAGGCTCGAGGAAACGCCCGCGTTCAAGCGGCAGGCCGAAGCGCGCGAAGCGCAGGACAAGGCCGTGCCGAAGGCGCATTTCCGCCGACAGCTCGCGCGGCACTGGCGCGCGCTGCTGCTGTGCGTCGGCCTCGTGCTGATCTTCAACGTCACCGATTACATGGCGCTGTCGTACCTGCCGAGCTATCTGTCGTCGACGCTGCACTTCGACGAGGCGCACGGCCTCGTGCTGATCCTGATCGTGATGGTGCTGATGATGCCGATGACGCTCGCCACGGGCCGCCTGTCGGACGCCGTCGGACGCAAGCCGGTGATGCTCGCCGGCTGCGTCGGGCTCTTCGCGCTCGCGATTCCCGCGCTGCTCCTGATCCGCACCGGCGAGACGGCGCTCGTGTTCGGCGGCCTGCTGATCCTCGGCGCACTGCTGTCGTGCTTCACGGGCGTGATGCCGTCGGCGCTGCCCGCGCTCTTTCCGACCGAGATCCGCTACGGCGCGCTCGCGATCGGCTTCAACGTGTCGGTGTCGCTGTTCGGCGGCACGACGCCGCTCGCCGCCGCGTGGCTCGTCGACGCGACGGGCAACCTGATGATGCCCGCGTACTACCTGATGGGCGCGGCCGTGATCGGCGCGATCTCGGTGCTCGCGCTGCCCGAGAGCGCGCGCCAGCCGCTCAAGGGCTCGCCGCCCGCCGTCGCGTCGCACCGCGAGGCACACGCGCTCGCGCGCGAGATCAAGCGCCGCGAGGCGGCCGAGCGCGACGACAGCGGCTACCCGTCGGCCGCGGCGTTGCGCGCGTGA > 232 BMA10247_0021 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 hypothetical_protein YP_001079603.1 11 MTKAGCGAPAYGRGRAAGGRRWRFGPPPDEGRRHAARRSAAASAAER beta_subgroup Burkholderia_mallei_NCTC_10247 Burkholderia_mallei_NCTC_10247 NC_009080 20970..22628 NA NA 1655:>1659 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000548.Source_DNA_and_bacteria_available_from_David_DeShazer(david.deshazer@det.amedd.army.mil).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_mallei_NCTC_10247_chromosome_chromosome_I,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_A3MH66_BURM7.gb Pseudomonas_RNA_homology_group_II 126447966 Submitted_(01-MAR-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_009080 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1659 I genomic_DNA NA NCTC_10247 NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320389 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_009080.1 ATGGCAACGGTTGGCGGACAAATTGCGCACGCGCCGATGACGGGCGACGAAAAGCGCGTGATCTTCGCATCGTCGCTCGGCACCGTGTTCGAGTGGTACGACTTCTATCTGGCCGGCTCGCTCGCGGCCTACATCAGCAAGAGCTTCTTTTCAGGCGTCAACCCGACCGCCGTGTTCATCTTCACGCTGCTCGGCTTCGCGGCGGGCTTCGCCGTCCGACCGTTCGGCGCGATCGTGTTCGGCCGCCTCGGCGACCTCGTGGGACGCAAGCATACGTTCCTCATCACGATCGTGATCATGGGGATCTCGACGTTCGTCGTCGGCTTCCTGCCGGGCTACGCGTCGATCGGCATCGCCGCGCCCGTGATCTTCATCGCGATGCGGCTGCTGCAAGGCCTCGCGCTCGGCGGCGAATACGGCGGCGCGGCGACATACGTGGCCGAGCATGCACCCTCGCACCGCCGCGGCTTCTATACGTCGTGGATCCAGACGACCGCGACGCTCGGCCTGTTCCTGTCGCTCCTCGTGATTCTCGGCGTGCGCACCGCGATCGGCGAGGAAGCATTCGGCAGTTGGGGCTGGCGCGTGCCGTTCGTCGCGTCGATCCTGCTGCTCGCCGTATCCGTGTGGATCCGCCTGCAACTGAACGAATCGCCGGTGTTCCTGCGGATCAAGGCCGAGGGCAAGACGTCGAAGGCGCCGCTCACCGAAGCGTTCGGCCAGTGGAAGAACCTGAAGATCGTGATCCTCGCGCTCATCGGGCTGACGGCGGGCCAGGCGGTGGTCTGGTACACGGGCCAGTTCTATGCGCTCTTCTTCCTCACGCAGACGCTGAAGGTCGACGGCGCGAGCGCGAACATCCTGATCGCGCTCGCCCTTCTGATCGGCACGCCGTTCTTCGTGTTCTTCGGCTCGCTGTCCGACAGGATCGGCCGCAAGCCGATCATCCTCGCCGGCTGCCTGATCGCCGCGCTCACCTACTTCCCGCTCTTCAAGGCGCTCACGCACTTCGCGAATCCGGCGCTCGAGGCGGCGACGCAAAAGGCGCCGATCACGGTGGTCGCCAATCCCGACGAATGCTCGTTCCAGTTCAACCCGGTGGGCACGGCGAAGTTCACGTCGTCCTGCGACATCGCGAAAAGCGCGCTCGCGAAATCGGGCCTCAATTACGAGAACGTCGCCGCGCCGGCGGGCACGCTTGCGCAGATCAAGATCGGCGACACGGCGATCGCCACGTACGACGGCAAGGCCGCCGACGCAAAAGACCAGGCGAAGGCGTTCGACAAGACGCTCGCGTCGACGCTGAAGGCGGCGGGCTACCCGGCGAAAGCCGACCCGGCCCGGCTCAACTGGCCGATGACGACGGTGATCCTCGCGATACTCGTGATCTACGTGACGATGGTGTACGGGCCGATCGCGGCGATGCTGGTCGAGATGTTCCCGACGCGGATTCGCTATACGTCGATGTCGCTGCCGTATCACATCGGCAACGGCTGGTTCGGCGGCTTCCTGCCGGCGACGGCGTTCGCGATCGTCGCGGCGAAGGGCGACATCTATTCGGGGCTCTGGTATCCGATCGGCGTCGCGCTCGTCACGTTCGTGATCGGACTGCTGTTCGTGAAGGAAACCAAGGATTCGAATATCTACGCGCAGGATTGA > 233 BMA10247_1032 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_superfamily_transporter_sialate:H(+)_symporter YP_001080587.1 11 MAMSWTREQRNVTIAAYLGWTLDAFDFFLMVFVLKDIAAEFNTKIPAVAFAITLTLAARPIGALIFGRLADHFGRRPTLMINIACYSLLELASGFAPSLAALLVLRTLFGVAMGGEWGVGSALTMETVPPRARGAVSGLLQAGYPSGYLLASVVFGLLYPYIGWRGMFMIGVLPALLVLYVRAKVPESPAWKQMEKRARPGLVATLKQNWKLSIYAVVLMTAFNFFSHGTQDLYPTFLREQHHFDPHTVSWITIVLNIGAIVGGLTFGWLSERIGRRRAIFIAAMIALPVLPLWAFSTGALALAAGAFLMQISVQGAWGVIPVHLNEISPDEIRATFPGFVYQLGNLLASGNATLQAQFAVDHGNNYGMALATVAGIVAVVICVLIVFSRERRGIDMTQTAAMSPTSG beta_subgroup Burkholderia_mallei_NCTC_10247 Burkholderia_mallei_NCTC_10247 NC_009080 1024054..1025280 NA NA 0:1227 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000548.Source_DNA_and_bacteria_available_from_David_DeShazer(david.deshazer@det.amedd.army.mil).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_mallei_NCTC_10247_chromosome_chromosome_I,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_A3MK01_BURM7.gb Pseudomonas_RNA_homology_group_II 126447966 Submitted_(01-MAR-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_009080 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1227 I genomic_DNA NA NCTC_10247 NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320389 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_009080.1 ATGGCCATGAGCTGGACCCGGGAGCAACGCAACGTCACGATCGCCGCCTATCTCGGCTGGACGCTCGACGCGTTCGACTTCTTCCTGATGGTCTTCGTGCTGAAGGACATCGCCGCCGAATTCAACACGAAGATTCCCGCCGTCGCGTTCGCGATCACGCTGACGCTCGCCGCGCGCCCGATCGGCGCGCTGATCTTCGGCCGCCTCGCCGATCACTTCGGCCGCCGGCCGACGCTGATGATCAACATCGCGTGCTACTCGCTGCTCGAGCTCGCGTCCGGCTTCGCGCCGAGCCTCGCCGCGCTGCTCGTGCTGCGCACGCTGTTCGGCGTCGCGATGGGCGGCGAATGGGGCGTCGGCTCCGCGCTGACGATGGAGACGGTTCCGCCGCGCGCGCGCGGCGCGGTGTCGGGCCTGCTGCAGGCGGGCTATCCGAGCGGCTACCTGCTCGCGTCGGTCGTCTTCGGCCTGCTCTACCCGTACATCGGCTGGCGCGGCATGTTCATGATCGGCGTGCTGCCCGCGCTGCTCGTGCTGTACGTGCGCGCGAAAGTGCCCGAATCGCCCGCGTGGAAGCAGATGGAAAAGCGCGCGCGGCCGGGCCTCGTCGCCACGCTCAAGCAGAACTGGAAACTGTCGATCTATGCAGTCGTCCTGATGACCGCGTTCAACTTCTTCTCGCACGGCACGCAGGATCTCTACCCGACTTTCCTGCGCGAGCAGCATCACTTCGATCCGCATACGGTGTCGTGGATCACGATCGTGCTGAACATCGGCGCGATCGTGGGCGGCCTCACGTTCGGCTGGTTGTCCGAACGCATCGGCCGGCGCCGCGCGATCTTCATCGCCGCGATGATCGCGCTGCCCGTGCTGCCGCTGTGGGCGTTCTCGACCGGCGCGCTCGCGCTCGCCGCGGGCGCGTTCCTGATGCAGATCTCGGTGCAGGGCGCGTGGGGCGTGATCCCCGTGCACCTGAACGAGATTTCACCGGACGAGATTCGCGCGACGTTCCCCGGCTTCGTCTATCAGCTCGGCAACCTGCTCGCGTCGGGCAACGCGACGCTGCAGGCGCAGTTCGCGGTCGATCACGGCAACAACTACGGCATGGCGCTCGCGACGGTCGCGGGCATCGTCGCCGTCGTCATCTGCGTTTTAATTGTGTTCAGCCGCGAACGACGCGGAATCGACATGACGCAGACGGCCGCGATGAGCCCGACCAGCGGATGA > 234 BMAFMH_E0535 identified_by_match_to_protein_family_HMM_PF00070;_match_to_protein_family_HMM_PF07992 pyridine_nucleotide-disulfide_oxidoreductase EDK55472.1 11 MPRTVVVIGGGQAAGWVVKTLRDEGFAGRIVMIADEAHLPYERPALSKAVLAGEADIATVRVMQPDAFGALDVDAWQPERAASIDRARRVVRTASGREIEYDRLVIATGGTPRRLPDAIVGTAHLHYLRTLDEALALGEKLRASRRVLVIGGGWIGLEVAATARKLGVDALVVEGAPRLCARSVPGAVSDFLLDLHRANGVDVRLNASLASLDAHPDDARRVRATLAGGGVVDADFAVAGIGLALNTSLATEAGLHVDDGIVVDEYGATSDPAIFACGDVANHPNAWLKRRVRLESWANAQHQAIAAAKAVLGVRAPYAEIPWFWSDQYDVNLQILGDLPADARCIVRGELAAKRATLFFVADGALRGVIAINAARELKLARKWMNQGRAIDVAALADTAKALA beta_subgroup Burkholderia_mallei_FMH Burkholderia_mallei_FMH DS264095 554735..556183 DeShazer,D.,_Woods,D.E._and_Nierman,W.C. NA 1441:>1449 NA NA 18-MAY-2007 Burkholderia_mallei_FMH_scf_1099471655815_genomic_scaffold,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_A5J3J4_BURMA.gb Pseudomonas_RNA_homology_group_II 147747968 Submitted_(06-MAR-2007)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA DS264095 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1449 NA genomic_DNA NA FMH NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 334802 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA DS264095.1 CTACGCCTCGAGTTTCTCGAGCACCTGGCCTTTCGTCTCGATGCCGACGGAATGCACGGTCAGCGCGGCAATGAGCGGCACCGCCGCGAGCAAATAGAACGCCGGGCTCAGATCGCCGCCGACGATCGCGCGCGGCACCACCATCGGCGCGACGAACGAGGCGATCTTCAGCCACGCGCTGCCGAGCCCGCAGCCGGCCGCGCGGATGCTCGTCGGATACTGCTCGGGCGTGTACACATAGGAGGTGATGAAGCCCGAGGCCATCAAACCGAGCGCGAGCGAGCAGAACGCCGCGACCACATACACCGACGATGCGTGATAGACGCCCGCGAAGACGAGCGACAGCGCACAGAGCACGAACGACCACACGATCACCGGCTTGCGGCCGACCACGTCGACGGCGAGCGCCGACACGAGCGAGCCCGCCACGCCCATCACCGAGCCGATCACCGCGAGATTCAGCGCGAGCTGCAGCGGCGCGTGATAGAAGTTCTTGTAGATCGTCGGCAGCCAGGTCGACAGCCCGTACTGGATGAAACCGCACGTGGCCCATAGCGTCGCCACCGCAAGCGTGCGCTTCAGATACGCGGGCCCGAACAGGTCGACCATTCGGCGCTTCGGATGGCTGAGCACGAGCGTGTCGAATTCGCCCGCGTGCGCGACGGGCGGCAGCGGTTCTTTCACCGAGGCCTCGAACGCATGCAGCGCGCGCCCCGCTTCGTCGAGCCGCCCGCGCGACGCGAGCCAGCGCGGCGATTCCGGCACGAGCCGCGTGAGCACGAGCGCGAGCAGCAGCGGCATGCCGCCGATGAAATACATCACCTCCCAGCCGAAGCGCGGCACGAGCCACGCGCCGAACGCCATCGACGCGAGCAGGCCGATCGGAAACACGATCTCGTACAGCAGCACGAAGCGCCCGCGGCCGTGCGCGCGCGTGATTTCGTTGATGTAGGTCGCGGCGACCGGCAGCTCGCCGCCGAGACCGAGCCCCTGCACGATCCGCAGCAGCACGAATGTTTCGAACGTCGAAGCGAATCCGCATGCGATGCTCGTCACGCCGATCACCGCCGAGCTCCACGCGATCGCGCGCACGCGGCCGTGCTTTTGCGCGAGCGCCGGGAACAGGAACGCACCGAGCAATTGGCCGATCGCGCCGGACGCGATCAGCATTCCGATCTGATTCGGCGACAGCCCCCACTTGTGGATCAGCAGCGGCAGCGTCGCCGCGATCGTGATCACGTCGAAGCCGTCGAAGAAGGTCGCGGTGCCGATCAGCACGCGCGCGCGGATCTGCATCGCGTTCGCGGGCAGCCGCTCGATGCGCGCGATGATCGCGCCGGGTGTCGCGGCGCCCGCCGCCGCGTCGGCCGCGGGCGCGCCCGCGATCGCGGTTTCCAGTGTGCTCATGCGTGGGTTCTCCTCCATGTCGTCGTTCTCGTGCTCAGGCAA > 235 BMA721280_A0104 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EDK86001.1 11 MRPFTLATDPRPIASGTPGKPWRTAPRRAVRPPSQEFSTLTATPAPSSSSSAPTEGALPAAAHEITVVDQGLLKRAVGAMALGNAMEWFDFGVYSYIAVTLGQVFFPSSSPSAQLLATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAMTMIMMAVGTFAIGLIPSYDSIGLLAPVLLLVARLVQGFSTGGEYGGAATFIAEFSTDKRRGFMGSFLEFGTLIGYVMGAGVVALLTASLSHDALLSWGWRVPFLIAGPLGLIGLYIRMRLEETPAFKRQAEAREAQDKAVPKAHFRRQLARHWRALLLCVGLVLIFNVTDYMALSYLPSYLSSTLHFDEAHGLVLILIVMVLMMPMTLATGRLSDAVGRKPVMLAGCVGLFALAIPALLLIRTGETALVFGGLLILGALLSCFTGVMPSALPALFPTEIRYGALAIGFNVSVSLFGGTTPLAAAWLVDATGNLMMPAYYLMGAAVIGAISVLALPESARQPLKGSPPAVASHREAHALAREIKRREAAERDDSGYPSAAALRA beta_subgroup Burkholderia_mallei_2002721280 Burkholderia_mallei_2002721280 CH899694 1353110..1354714 DeShazer,D.,_Woods,D.E._and_Nierman,W.C. NA 0:1605 Annotation_was_added_to_the_scaffolds_in_May_2007. NA 22-MAY-2007 Burkholderia_mallei_2002721280_scf_1099945121908_genomic_scaffold,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_A5TM82_BURMA.gb Pseudomonas_RNA_homology_group_II 101071518 Unpublished NA CH899694 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1605 NA genomic_DNA NA 2002721280 NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 370895 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Annotation_of_Burkholderia_mallei_2002721280 NA CH899694.1 ATGCGCCCTTTCACGCTCGCGACCGACCCTCGTCCGATCGCGAGCGGCACTCCCGGCAAACCGTGGCGAACCGCGCCCCGTCGCGCGGTTCGGCCGCCGTCACAGGAGTTTTCGACCTTGACTGCAACACCCGCCCCCTCCAGTTCGTCCAGCGCGCCCACCGAAGGCGCGCTTCCCGCCGCTGCGCACGAGATCACCGTCGTCGATCAGGGCCTGCTCAAGCGCGCCGTCGGCGCGATGGCGCTCGGCAACGCGATGGAATGGTTCGACTTCGGCGTCTACAGCTACATCGCCGTCACGCTCGGCCAGGTGTTCTTCCCGTCGAGCAGCCCGTCCGCGCAGTTGCTCGCGACGTTCGGCACGTTCGCCGCCGCCTTCCTCGTGCGCCCGCTCGGCGGGATGGTGTTCGGGCCGCTCGGCGATCGCATCGGCCGCCAGCGCGTGCTCGCGATGACGATGATCATGATGGCGGTCGGCACGTTCGCGATCGGCCTGATCCCGAGCTACGACTCGATCGGCCTCCTCGCGCCCGTGCTGCTCCTCGTCGCGCGTCTCGTGCAAGGCTTCTCGACGGGCGGCGAGTACGGCGGCGCGGCAACCTTCATCGCCGAGTTCTCGACCGACAAGCGCCGCGGCTTCATGGGCAGCTTCCTCGAGTTCGGCACGCTGATCGGCTATGTGATGGGCGCGGGCGTCGTCGCGCTGCTGACGGCTTCGCTGTCGCACGACGCGCTGCTGTCGTGGGGCTGGCGCGTGCCGTTCCTGATCGCCGGCCCGCTCGGCCTGATCGGCCTGTACATCCGGATGAGGCTCGAGGAAACGCCCGCGTTCAAGCGGCAGGCCGAAGCGCGCGAAGCGCAGGACAAGGCCGTGCCGAAGGCGCATTTCCGCCGACAGCTCGCGCGGCACTGGCGCGCGCTGCTGCTGTGCGTCGGCCTCGTGCTGATCTTCAACGTCACCGATTACATGGCGCTGTCGTACCTGCCGAGCTATCTGTCGTCGACGCTGCACTTCGACGAGGCGCACGGCCTCGTGCTGATCCTGATCGTGATGGTGCTGATGATGCCGATGACGCTCGCCACGGGCCGCCTGTCGGACGCCGTCGGACGCAAGCCGGTGATGCTCGCCGGCTGCGTCGGGCTCTTCGCGCTCGCGATTCCCGCGCTGCTCCTGATCCGCACCGGCGAGACGGCGCTCGTGTTCGGCGGCCTGCTGATCCTCGGCGCACTGCTGTCGTGCTTCACGGGCGTGATGCCGTCGGCGCTGCCCGCGCTCTTTCCGACCGAGATCCGCTACGGCGCGCTCGCGATCGGCTTCAACGTGTCGGTGTCGCTGTTCGGCGGCACGACGCCGCTCGCCGCCGCGTGGCTCGTCGACGCGACGGGCAACCTGATGATGCCCGCGTACTACCTGATGGGCGCGGCCGTGATCGGCGCGATCTCGGTGCTCGCGCTGCCCGAGAGCGCGCGCCAGCCGCTCAAGGGCTCGCCGCCCGCCGTCGCGTCGCACCGCGAGGCACACGCGCTCGCGCGCGAGATCAAGCGCCGCGAGGCGGCCGAGCGCGACGACAGCGGCTACCCGTCGGCCGCGGCGTTGCGCGCGTGA > 236 BMAJHU_I0442 identified_by_match_to_protein_family_HMM_PF00070;_match_to_protein_family_HMM_PF07992 pyridine_nucleotide-disulfide_oxidoreductase EDK61406.1 11 MPRTVVVIGGGQAAGWVVKTLRDEGFAGRIVMIADEAHLPYERPALSKAVLAGEADIATVRVMQPDAFGALDVDAWQPERAASIDRARRVVRTASGREIEYDRLVIATGGTPRRLPDAIVGTAHLHYLRTLDEALALGEKLRASRRVLVIGGGWIGLEVAATARKLGVDALVVEGAPRLCARSVPGAVSDFLLDLHRANGVDVRLNASLASLDAHPDDARRVRATLAGGGVVDADFAVAGIGLALNTSLATEAGLHVDDGIVVDEYGATSDPAIFACGDVANHPNAWLKRRVRLESWANAQHQAIAAAKAVLGVRAPYAEIPWFWSDQYDVNLQILGDLPADARCIVRGELAAKRATLFFVADGALRGVIAINAARELKLARKWMNQGRAIDVAALADTAKALA beta_subgroup Burkholderia_mallei_JHU Burkholderia_mallei_JHU DS264106 454774..456222 DeShazer,D.,_Woods,D.E._and_Nierman,W.C. NA 1441:>1449 NA NA 18-MAY-2007 Burkholderia_mallei_JHU_scf_1099474119502_genomic_scaffold,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_A5XKL7_BURMA.gb Pseudomonas_RNA_homology_group_II 147753967 Submitted_(06-MAR-2007)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA DS264106 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1449 NA genomic_DNA NA JHU NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 334803 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA DS264106.1 CTACGCCTCGAGTTTCTCGAGCACCTGGCCTTTCGTCTCGATGCCGACGGAATGCACGGTCAGCGCGGCAATGAGCGGCACCGCCGCGAGCAAATAGAACGCCGGGCTCAGATCGCCGCCGACGATCGCGCGCGGCACCACCATCGGCGCGACGAACGAGGCGATCTTCAGCCACGCGCTGCCGAGCCCGCAGCCGGCCGCGCGGATGCTCGTCGGATACTGCTCGGGCGTGTACACATAGGAGGTGATGAAGCCCGAGGCCATCAAACCGAGCGCGAGCGAGCAGAACGCCGCGACCACATACACCGACGATGCGTGATAGACGCCCGCGAAGACGAGCGACAGCGCACAGAGCACGAACGACCACACGATCACCGGCTTGCGGCCGACCACGTCGACGGCGAGCGCCGACACGAGCGAGCCCGCCACGCCCATCACCGAGCCGATCACCGCGAGATTCAGCGCGAGCTGCAGCGGCGCGTGATAGAAGTTCTTGTAGATCGTCGGCAGCCAGGTCGACAGCCCGTACTGGATGAAACCGCACGTGGCCCATAGCGTCGCCACCGCAAGCGTGCGCTTCAGATACGCGGGCCCGAACAGGTCGACCATTCGGCGCTTCGGATGGCTGAGCACGAGCGTGTCGAATTCGCCCGCGTGCGCGACGGGCGGCAGCGGTTCTTTCACCGAGGCCTCGAACGCATGCAGCGCGCGCCCCGCTTCGTCGAGCCGCCCGCGCGACGCGAGCCAGCGCGGCGATTCCGGCACGAGCCGCGTGAGCACGAGCGCGAGCAGCAGCGGCATGCCGCCGATGAAATACATCACCTCCCAGCCGAAGCGCGGCACGAGCCACGCGCCGAACGCCATCGACGCGAGCAGGCCGATCGGAAACACGATCTCGTACAGCAGCACGAAGCGCCCGCGGCCGTGCGCGCGCGTGATTTCGTTGATGTAGGTCGCGGCGACCGGCAGCTCGCCGCCGAGACCGAGCCCCTGCACGATCCGCAGCAGCACGAATGTTTCGAACGTCGAAGCGAATCCGCATGCGATGCTCGTCACGCCGATCACCGCCGAGCTCCACGCGATCGCGCGCACGCGGCCGTGCTTTTGCGCGAGCGCCGGGAACAGGAACGCACCGAGCAATTGGCCGATCGCGCCGGACGCGATCAGCATTCCGATCTGATTCGGCGACAGCCCCCACTTGTGGATCAGCAGCGGCAGCGTCGCCGCGATCGTGATCACGTCGAAGCCGTCGAAGAAGGTCGCGGTGCCGATCAGCACGCGCGCGCGGATCTGCATCGCGTTCGCGGGCAGCCGCTCGATGCGCGCGATGATCGCGCCGGGTGTCGCGGCGCCCGCCGCCGCGTCGGCCGCGGGCGCGCCCGCGATCGCGGTTTCCAGTGTGCTCATGCGTGGGTTCTCCTCCATGTCGTCGTTCTCGTGCTCAGGCAA > 237 BMA10399_C0073 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EDP86515.1 11 MTAPQPCARQPARAAAAAFVGTMIEWYDFYIYATAAALVFGELYFPSGDPFVSTMASFGTFAVGFFARPLGGVVFGHLGDRIGRKKALMTTLAMMGAATVCIGLLPSHASIGALAPVLLVLLRIVQGVAVGGEWGGAVLMAGEHAPDGRRTFFASFAQLGSPAGLVLSLVAFRAATSLEKADFLAWGWRLPFLASAVLLIVGLAIRLGVNESPEFEAVKRTRATAKLPIADVLRSASGLVLLCIGANTIGIAGVYFTNTFMIAYTTQQLGIPRATILDCLFAVAIIQFVAQPAAAWLAEKLGGARFLKLAAVAAMASPYPMFMLVTSGRPGAIVAGIALAVVCMAGFYSVIAGFVSGVFAARIRYSAISLSYQVCGALAGGLTPLVGTWLAHRYAGAWLPLALFYTCLAGLSLVSVVALDARRAARGASAREALEAR beta_subgroup Burkholderia_mallei_ATCC_10399 Burkholderia_mallei_ATCC_10399 CH899681 71007..72320 DeShazer,D.,_Woods,D.E._and_Nierman,W.C. NA 0:1314 Annotation_was_added_to_the_scaffolds_in_November_2007. NA 20-NOV-2007 Burkholderia_mallei_ATCC_10399_scf_1047276662082_genomic_scaffold,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_A9K1M5_BURMA.gb Pseudomonas_RNA_homology_group_II 101061121 Unpublished NA CH899681 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1314 NA genomic_DNA NA ATCC_10399 NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 412021 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Annotation_of_Burkholderia_mallei_ATCC_10399 NA CH899681.1 ATGACTGCCCCCCAACCGTGCGCGCGCCAGCCGGCGCGCGCCGCTGCCGCCGCGTTCGTCGGCACGATGATCGAGTGGTACGACTTCTACATTTACGCGACCGCCGCCGCGCTCGTGTTCGGCGAGTTGTACTTTCCGTCGGGCGACCCGTTCGTCAGCACGATGGCTTCGTTCGGCACGTTCGCGGTCGGCTTTTTCGCGCGGCCGCTCGGCGGCGTCGTGTTCGGCCATCTCGGCGACCGGATCGGCCGCAAGAAGGCGCTGATGACGACGCTCGCGATGATGGGCGCGGCGACCGTGTGCATCGGCCTGTTGCCGAGCCATGCGTCGATCGGTGCGCTCGCGCCGGTGCTGCTCGTGCTGCTGCGGATCGTGCAGGGCGTCGCGGTGGGCGGCGAGTGGGGCGGCGCGGTGCTGATGGCGGGCGAGCACGCGCCCGACGGGCGGCGCACGTTCTTCGCTTCGTTCGCGCAGTTGGGCAGCCCGGCCGGGCTGGTCCTGTCGCTCGTCGCGTTTCGCGCGGCCACGTCGCTCGAGAAGGCGGACTTTCTCGCATGGGGCTGGCGCCTGCCGTTTCTCGCGAGCGCGGTGCTGCTGATCGTCGGTCTCGCGATCCGGCTGGGCGTGAACGAATCGCCGGAATTCGAGGCGGTGAAGCGCACGCGCGCCACCGCGAAGCTGCCGATCGCCGACGTGTTGCGCTCCGCGTCGGGGCTCGTGCTGCTGTGCATCGGCGCGAACACGATCGGCATCGCCGGCGTGTATTTCACGAACACGTTCATGATCGCGTACACGACGCAGCAGCTCGGCATCCCGCGCGCGACGATCCTCGATTGCCTGTTCGCGGTCGCGATCATCCAGTTCGTCGCGCAGCCCGCCGCCGCGTGGCTGGCCGAAAAGCTCGGCGGCGCGCGTTTCCTGAAGCTCGCGGCCGTCGCCGCGATGGCTTCGCCGTATCCGATGTTCATGCTCGTGACGAGCGGGCGGCCCGGCGCGATCGTCGCCGGCATCGCGCTCGCGGTGGTCTGCATGGCGGGCTTCTATTCGGTGATCGCGGGTTTCGTCTCCGGCGTGTTCGCGGCGCGCATCCGCTATTCGGCGATCTCGCTGTCCTACCAGGTGTGCGGCGCGCTCGCGGGCGGCCTCACGCCGCTCGTCGGCACGTGGCTCGCGCATCGCTACGCGGGCGCATGGCTGCCGCTCGCGCTGTTCTATACGTGTCTCGCGGGGCTCTCGCTCGTGAGCGTCGTCGCGCTCGACGCGCGCCGCGCCGCGCGAGGCGCTTCGGCCCGCGAAGCGCTGGAGGCGCGCTGA > 238 BMA10399_K0242 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EDP88322.1 11 MPTPTPGTPRPPRTPQPVRAALAAFIGTTVEFYDYYTYATAAALVLGDVFFPSDNPFVSTMASFATFFVGFVARPLSGAVFGHLGDRIGRKKMLVLTMFLMGAATTGIGLLPGYATIGVWAPVLLVLLRILQGIAVGGEWGGAVLMASEHASAGRRTLFASFPQMGSPAGLILSLLAFRYVTSLDHARFVAWGWRLPFLASFVLLLIGVAVRLGVNESPEFERVRDSHAVARFPVAEVLRTAWYPIVLAAAATTIGSAGFFFTNTFMISYVTTYLGMSKSFILDCLFAVTLIQLLSQPVSALLAQRFGETRFLVCAALLSMLTPYPMFVLVRTHDPVAIVAGIAFAVVALSAVYAVIAGFMSAAFPTRVRYSGISIAYQLCALVAGGTTPLVGTMIAQRYRGEWLPLALFFSLLAFVSLVGIVGLGRYRRNLHAVAPRTWAVNP beta_subgroup Burkholderia_mallei_ATCC_10399 Burkholderia_mallei_ATCC_10399 CH899685 243899..245233 DeShazer,D.,_Woods,D.E._and_Nierman,W.C. NA 0:1335 Annotation_was_added_to_the_scaffolds_in_November_2007. NA 20-NOV-2007 Burkholderia_mallei_ATCC_10399_scf_1047276662089_genomic_scaffold,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_A9K7B3_BURMA.gb Pseudomonas_RNA_homology_group_II 101061117 Unpublished NA CH899685 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1335 NA genomic_DNA NA ATCC_10399 NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 412021 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Annotation_of_Burkholderia_mallei_ATCC_10399 NA CH899685.1 TCACGGATTTACCGCCCATGTCCGCGGCGCGACCGCGTGCAGATTCCGGCGATACCGCCCGAGCCCCACGATGCCGACGAGCGACACGAACGCCAGCAGTGAGAAGAACAGCGCGAGCGGCAGCCATTCTCCGCGATAGCGCTGCGCGATCATCGTGCCGACGAGCGGCGTGGTGCCGCCCGCGACTAGCGCGCATAGCTGGTAGGCGATCGAGATGCCCGAATAGCGCACGCGCGTGGGGAACGCGGCGGACATGAAGCCGGCGATCACCGCGTAGACGGCGGAGAGCGCGACGACCGCGAACGCGATGCCCGCGACGATCGCAACCGGATCGTGCGTGCGCACGAGCACGAACATCGGATACGGCGTGAGCATCGACAGCAGCGCCGCGCAGACGAGGAAACGCGTTTCGCCGAAACGTTGCGCGAGCAGCGCCGAGACGGGCTGCGACAGCAACTGGATGAGCGTGACGGCGAACAGGCAATCGAGGATGAACGATTTCGACATCCCGAGATACGTCGTCACGTACGAGATCATGAACGTGTTCGTGAAGAAGAAGCCGGCGGAGCCGATCGTCGTCGCGGCCGCGGCGAGCACGATCGGATACCACGCGGTGCGCAGCACTTCGGCGACCGGAAATCGGGCGACCGCGTGGCTGTCGCGCACGCGCTCGAACTCCGGCGATTCGTTGACGCCGAGCCGTACCGCGACGCCGATCAGCAACAGCACGAAGCTTGCGAGAAACGGCAGGCGCCAGCCCCACGCGACGAAGCGGGCGTGATCGAGCGACGTGACGTAGCGGAACGCGAGCAGCGAGAGGATCAGCCCGGCGGGGCTGCCCATTTGCGGAAACGACGCGAAGAGCGTCCTGCGCCCGGCGCTCGCGTGCTCGCTTGCCATCAGCACCGCGCCGCCCCATTCGCCGCCGACGGCGATGCCCTGGAGGATGCGCAGCAGCACGAGCAGGACGGGGGCCCAGACGCCGATCGTCGCGTAGCCGGGCAGCAGGCCGATGCCGGTTGTCGCGGCGCCCATCAGGAACATCGTCAGGACGAGCATTTTCTTGCGGCCGATCCGGTCGCCGAGATGGCCGAACACCGCACCGCTCAGTGGGCGCGCGACGAAGCCGACGAAGAACGTGGCGAACGATGCCATCGTGCTGACGAAAGGGTTGTCGCTCGGGAAGAACACGTCGCCGAGCACGAGCGCGGCGGCGGTGGCGTACGTGTAGTAATCGTAGAACTCGACGGTGGTGCCGATGAAGGCGGCCAGCGCGGCGCGCACGGGTTGGGGCGTGCGGGGAGGGCGGGGCGTGCCGGGCGTCGGGGTTGGCAT > 239 BMAGB8_1342 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 MFS_transporter,_sialate:H+_symporter EEP84438.1 11 MAMSWTREQRNVTIAAYLGWTLDAFDFFLMVFVLKDIAAEFNTKIPAVAFAITLTLAARPIGALIFGRLADHFGRRPTLMINIACYSLLELASGFAPSLAALLVLRTLFGVAMGGEWGVGSALTMETVPPRARGAVSGLLQAGYPSGYLLASVVFGLLYPYIGWRGMFMIGVLPALLVLYVRAKVPESPAWKQMEKRARPGLVATLKQNWKLSIYAVVLMTAFNFFSHGTQDLYPTFLREQHHFDPHTVSWITIVLNIGAIVGGLTFGWLSERIGRRRAIFIAAMIALPVLPLWAFSTGALALAAGAFLMQISVQGAWGVIPVHLNEISPDEIRATFPGFVYQLGNLLASGNATLQAQFAVDHGNNYGMALATVAGIVAVVICVLIVFSRERRGIDMTQTAAMSPTSG beta_subgroup Burkholderia_mallei_GB8_horse_4 Burkholderia_mallei_GB8_horse_4 AAHO01000066 27750..28976 Nierman,W.C. NA 0:1227 Burkholderia_mallei_GB8_horse_4_is_a_horse-passaged_derivative_ofBurkholderia_mallei_ATCC_23344.DNA_source_was_Donald_E._Woods_(woods@ucalgary.ca)_of_theUniversity_of_Calgary_Health_Science_Center,_Alberta,_Canada.Genome_Coverage:_7.5X.Sequencing_Technology:_ABI.Annotation_was_added_to_the_contigs_in_May_2009.Burkholderia_mallei_GB8_horse_4_is_a_horse-passaged_derivative_ofBurkholderia_mallei_ATCC_23344.DNA_source_was_Donald_E._Woods_(woods@ucalgary.ca)_of_theUniversity_of_Calgary_Health_Science_Center,_Alberta,_Canada.Genome_Coverage:_7.5X.Sequencing_Technology:_ABI.Annotation_was_added_to_the_contigs_in_May_2009. NA 27-MAY-2009 Burkholderia_mallei_GB8_horse_4_contig_397,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_C4B0E3_BURMA.gb Pseudomonas_RNA_homology_group_II 67105595 Submitted_(07-JUN-2005)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA AAHO01000066 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1227 NA genomic_DNA NA GB8_horse_4 NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320390 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA AAHO01000066.1 ATGGCCATGAGCTGGACCCGGGAGCAACGCAACGTCACGATCGCCGCCTATCTCGGCTGGACGCTCGACGCGTTCGACTTCTTCCTGATGGTCTTCGTGCTGAAGGACATCGCCGCCGAATTCAACACGAAGATTCCCGCCGTCGCGTTCGCGATCACGCTGACGCTCGCCGCGCGCCCGATCGGCGCGCTGATCTTCGGCCGCCTCGCCGATCACTTCGGCCGCCGGCCGACGCTGATGATCAACATCGCGTGCTACTCGCTGCTCGAGCTCGCGTCCGGCTTCGCGCCGAGCCTCGCCGCGCTGCTCGTGCTGCGCACGCTGTTCGGCGTCGCGATGGGCGGCGAATGGGGCGTCGGCTCCGCGCTGACGATGGAGACGGTTCCGCCGCGCGCGCGCGGCGCGGTGTCGGGCCTGCTGCAGGCGGGCTATCCGAGCGGCTACCTGCTCGCGTCGGTCGTCTTCGGCCTGCTCTACCCGTACATCGGCTGGCGCGGCATGTTCATGATCGGCGTGCTGCCCGCGCTGCTCGTGCTGTACGTGCGCGCGAAAGTGCCCGAATCGCCCGCGTGGAAGCAGATGGAAAAGCGCGCGCGGCCGGGCCTCGTCGCCACGCTCAAGCAGAACTGGAAACTGTCGATCTATGCAGTCGTCCTGATGACCGCGTTCAACTTCTTCTCGCACGGCACGCAGGATCTCTACCCGACTTTCCTGCGCGAGCAGCATCACTTCGATCCGCATACGGTGTCGTGGATCACGATCGTGCTGAACATCGGCGCGATCGTGGGCGGCCTCACGTTCGGCTGGTTGTCCGAACGCATCGGCCGGCGCCGCGCGATCTTCATCGCCGCGATGATCGCGCTGCCCGTGCTGCCGCTGTGGGCGTTCTCGACCGGCGCGCTCGCGCTCGCCGCGGGCGCGTTCCTGATGCAGATCTCGGTGCAGGGCGCGTGGGGCGTGATCCCCGTGCACCTGAACGAGATTTCACCGGACGAGATTCGCGCGACGTTCCCCGGCTTCGTCTATCAGCTCGGCAACCTGCTCGCGTCGGGCAACGCGACGCTGCAGGCGCAGTTCGCGGTCGATCACGGCAACAACTACGGCATGGCGCTCGCGACGGTCGCGGGCATCGTCGCCGTCGTCATCTGCGTTTTAATTGTGTTCAGCCGCGAACGACGCGGAATCGACATGACGCAGACGGCCGCGATGAGCCCGACCAGCGGATGA > 240 BMAGB8_A1318 identified_by_match_to_protein_family_HMM_PF02653 ABC_transporter,_carbohydrate_uptake_transporter-2 EEP84173.1 11 MTLALSIGAIDLSLGTAIDVASLAFVCALAHRAGCASAALAGLGAALALGAANALLVTRLGIAPFLATLGTLFIGQTIQQLATDGGQPIYLLSTAPPPAFDALAHGVWLGVAAPLWIVAALAGALHVALECLTLGRQARALGAQPGVARHSGLRVGALAAGVFVASALVYGVAGLVLSSTVRSYAPQAGNAYLLNAIGATFIGATLSEARRPNVAGTLLGVLLVSFVANGLLLIGWNFYWQQVASGALVFAVLALGSGVGRERRARDAGQSG beta_subgroup Burkholderia_mallei_GB8_horse_4 Burkholderia_mallei_GB8_horse_4 AAHO01000074 17477..19324 Nierman,W.C. NA 1844:>1848 Burkholderia_mallei_GB8_horse_4_is_a_horse-passaged_derivative_ofBurkholderia_mallei_ATCC_23344.DNA_source_was_Donald_E._Woods_(woods@ucalgary.ca)_of_theUniversity_of_Calgary_Health_Science_Center,_Alberta,_Canada.Genome_Coverage:_7.5X.Sequencing_Technology:_ABI.Annotation_was_added_to_the_contigs_in_May_2009. NA 27-MAY-2009 Burkholderia_mallei_GB8_horse_4_contig_489,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_C4B146_BURMA.gb Pseudomonas_RNA_homology_group_II 67105587 Submitted_(07-JUN-2005)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA AAHO01000074 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1848 NA genomic_DNA NA GB8_horse_4 NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320390 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA AAHO01000074.1 GTGAGCACACTCGATCTCGACGCGCCGATCTCGACGCCGATCCGCACCGCGAGCGACGTTTCGCGCCTCATCAACGCATCGGGCGCGCGCGCGAACCACGCGCGCGTGATCGTCCTGCTCGCGCTCGGCGGCGTGTTCCTCGATGCGTACGATCTGACCACGCTGTCGTACGGCATCGAGGACGTGACCCGCGAGTTCGGCCTGACGCCGGCGCTGAGCGGGCTCGTCAGCGCGTCGATCATGATCGGCACGATCCTCGGCAGCCTGCTCGGCGGCTGGTTCACCGACAAGGTCGGCCGCTACCGCGTGTTCATGGCCGACATGCTCTGCTTCGTCGTCGCCGCGATCGTGGCCGGACTCGCGCCGAACGTAGAGGTGCTGATCGCCGCGCGCTTCGTGATGGGGCTCGGCGTCGGCATCGATCTGCCGGTCGCGATGGCGTTCCTGGCCGAGTTCTCGAAATTCGGCGGGCGCGGCAACAAGGCGTCGCGGCTCGCCGCGTGGTGCCCGATGTGGTACGCGGCGTCGTCCGTGTGCTTCCTGATCGTGTTCGGGCTGTATTTCGCGCTGCCCGCCGAGCACGCGCGCTGGCTGTGGCGCGCGTCGCTGATCTTCGGCGCGGTGCCGGCGCTCGCGATCATCGCGGTACGCGGCCGCTACATGAACGAATCGCCGCTGTGGGCCGCGAATCAAGGCAAGCTGCGCGACGCCGCGCGCATCCTGCGCGAGTCGTACGGGATCCGCGCGCATGCGGCCGACGACACGCCGCGCGCGGCACCGTCGCAGCCGCCCGTCAGTTTTCGCGTGCTGTTCAGGCAGCCGTACCTGCCGCGCACGCTCGTCGCGAGCGCGATGAATCTGTGCATCCCGTTCGAATACACGGCGATCGCGTTCTTCCTGCCGACGATCCTGACGCAGTTCCTCGGCGCGGGCGTGTTCGAGACGATCGCCGCGACGCTCGCGCTCAACGTGCTGTTCGCGCTCACGGGCGGGTTGCTCGGCATGCGCCTCGCGTACCGGCTGCCGTCGCGGCGCGTCGCGATCGCCGGCTTCGCCCGGCGCGCGCGGCTGGACGCCCGCGCGCCGCGTGCTGCTGCGCGGCGGCCCATGGCTTGCGCTCGCGCTCGTGTTCGCGGGCTTTTCCGTCAGCTCCCCGCTGTTCGTCACGTTCGCGAACCTCGGCAACGTGCTGCAGCAAAGCGCGGTCACCGGCCTGCTCGCGTTCGGCCTGACGATCGTGATGATCGGCGGCGGCGCGGATGCGATCAAGGGTGGGCTCGATCTATCGATCGCCGCGAATCTCGGCCTGTGCGCGGCGGTGTTCGCCGCCCTCACGCGCGGCGGCCACGGCGACGCGCTCGCGCTCGCCGCGACTTGCGCGACGGGCGTCGCGGTCGGCGCGCTCGCGTCGTGCGCGCTGCTGAGCGGCAGCGCGCCGGGCGCGGGCGACTATCTGCTGCCCGTCGTCGCGGCGGTGCTGCTCGGCGTCGTGTTCTCGCGCCGGCTCGTGCCGACGATTCCCGGCACGCTCGTCGCCGTGCTGTTCGTCGGCCTGCTCGCGAACGGCTTCCAGTTGAACAGCGTGTCGAGCTATTGGGTGAGCGGCGTCGAGGGCGCGCTGATCCTGTTCGTCGTCGCGGCCGTCGCGCTGCTGCGCCGGCGCCGCTCGCAGGAAGCATTCGATGCGTGACGCAACCGACCGTCTGTCGCGCCTCGCCGCGCTCGGCGCGCTCGCGGCCGTTCTCGCGTTCTTCGCCGTCGCGGCGCCCGGCTTCGCGACGCTCGCGAACGTCGAGCGCGTGCTCGTCAACAACTTCGCGCTGCTCGCGATCGCCGCGCTCGGGATGA > 241 BMAGB8_A1234 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 conserved_hypothetical_protein EEP83686.1 11 MPRVNAFLLTRMSAPAESSGFGKWAFYRAPGLIGQILSYYLKNKFH beta_subgroup Burkholderia_mallei_GB8_horse_4 Burkholderia_mallei_GB8_horse_4 AAHO01000095 10590..11963 Nierman,W.C. NA 1306:>1374 Burkholderia_mallei_GB8_horse_4_is_a_horse-passaged_derivative_ofBurkholderia_mallei_ATCC_23344.DNA_source_was_Donald_E._Woods_(woods@ucalgary.ca)_of_theUniversity_of_Calgary_Health_Science_Center,_Alberta,_Canada.Genome_Coverage:_7.5X.Sequencing_Technology:_ABI.Annotation_was_added_to_the_contigs_in_May_2009. NA 27-MAY-2009 Burkholderia_mallei_GB8_horse_4_contig_486,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_C4B2H6_BURMA.gb Pseudomonas_RNA_homology_group_II 67105566 Submitted_(07-JUN-2005)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA AAHO01000095 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1374 NA genomic_DNA NA GB8_horse_4 NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320390 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA AAHO01000095.1 TCAGCGCGTGAGCACGGCGTCGGCGACGTCGGCCCGCCGATGGCGGCGCGCGTCGAGCGCGATCACGCCGCCGAGCGAGAGCGCCGCGAGGCACGTATAGAACACCGCGAGCGGCCACCACTGCCCGGCGAACCGGTGCGCGAGCCACGTGCCGACGAGCGGCGTCAGCCCGCCCGCGATCGCGCCGCACATCTGGTACGAGATCGAGATCGCCGAATAGCGCACGCGCGTCGGGAACGCGCCGCTCACGAAGCCCGCGATCACCGAGTAGAAACCGGCGAGAAACACGGTCGCGATCGCGATGCCGATCACCATCGGCGCGAGCCGCCCCGTCTGCACGAGCGCGAACATCGGATAGGGCGAGGCCATCGCGAACAGCGCGGCGAGCTTGAGAAAGCGTGCGTCGCCGAGCTTGCCGCCGAGCCACGCGGCGATCGGCTGCGTCACGAACTGGATGATCGCGACGATGAACAGGCAATCGAGGATCAGCGATTTCGTCACGCCCACATGCTGCGTCGTGAACGCGATCATGAACGTGTTCGTGAAATACAGCCCCGCGATACCGATCGTGTTCGCGCACAGGCAGAACAGCAGCATCGCGCGCGACGTGCGCAGCGCCTCGGCGAGCGGCCGCGCGACGGTGCGCGACATCGCCTTCTCATGCGCGAACTCGGGCGATTCGTCGACCTTCAGCCGCACGAACACGCCGACCGCGAGCAGCGCGATGCTCGCGAGAAACGGCAGCCGCCAGCCCCAGGACATGAACGCGCCGTGCTCCATCGACGCGACCGCGCGAAACGCGACGAGCGACAGGATCAGCCCGGCCGGGCTGCCCAACTGCGCGAACGAAGCGAAGAACGTGCGCCGCCCATACGGCGCATGCTCGCCCGCCATCAGCACCGCGCCGCCCCACTCGCCGCCCACCGCGATGCCCTGAACGATGCGCAGCAGCACGAGCAGCACGGGCGCGAGCAGGCCGACGCGTTCGTAGGTCGGCAGCAGACCGACGCAGACCGTCGCCGCGCCCATCAGCGCGAGCGTCGCCATCAGCGCCTTCTTGCGGCCGATCCGGTCGCCGAGATGGCCGAAGAAGAGCCCGCCGAGCGGGCGCGCGAAGAAGCCGACCGCGAACGTCGCGAACGACGCCATCGTGCTCGTGAACGGATCGTGCGACGGGAAGAACAGCTCGCCGAAGACGAGCGCGGCCGCGTTCGCGTAGATGTAGAAGTCGTACCACTCGATCATCGTGCCGACGAACGCGGCGCCGGCCGCGCGGCGCGGCTGGCGCGCCGGCGGGCTCGGTGGGATGCCCCGGGTCAATGCGTTTCTCCTCACTCGAATGTCCGCCCCGGCCGAATCGTCCGGATTCGGCAA > 242 BMAA0788 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter YP_105504.1 11 MASTQSAPRATVPATTIDAGVISARLDRLPPTRSVWKLVALLSLGFFFELYDLLYSGYVAPGLVKGGILSATTRGLFGTTGVASFIAALFAGLFIGTIACGFLADRFGRRAVFTWSLLWYTAANVVMAFQDTAGGLNFWRFVVGLGLGVEMVTIGTYLSELVPKQIRGRAFACEQAVGFVAVPVVALLAYLLVPHAPFGLDGWRWVVLIGAHGAIFVWWIRRQLPESPRWLAQQGRLDEAERVLAALEAKVEAEYGRPLPPPAPAEPIAPRGRFADMWVPPYRRRTVMMTIFNVFQTVGFYGFANWVPTLLIKQGITVTTSLMYSSVIALAAPIGPLIGLAIADRFERKTVIVAMAGAAMIAGLLFSHASAAWLLVALGVCLTLANNIMSYSFHAYQAELFPTAIRARAVGFVYSWSRFSAIFTSFAIAAVLKGFGTPGVFVFIAGAMAIVMASIGLMGPRTKGVALEAISR beta_subgroup Burkholderia_mallei_ATCC_23344 Burkholderia_mallei_ATCC_23344 NC_006349 811274..812692 Nierman,W.C.,_DeShazer,D.,_Kim,H.S.,_Tettelin,H.,_Nelson,K.E.,_Feldblyum,T.,_Ulrich,R.L.,_Ronning,C.M.,_Brinkac,L.M.,_Daugherty,S.C.,_Davidsen,T.D.,_Deboy,R.T.,_Dimitrov,G.,_Dodson,R.J.,_Durkin,A.S.,_Gwinn,M.L.,_Haft,D.H.,_Khouri,H.,_Kolonay,J.F.,_Madupu,R.,_Mohammoud,Y.,_Nelson,W.C.,_Radune,D.,_Romero,C.M.,_Sarria,S.,_Selengut,J.,_Shamblin,C.,_Sullivan,S.A.,_White,O.,_Yu,Y.,_Zafar,N.,_Zhou,L._and_Fraser,C.M. NA 0:1419 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000011.On_Oct_6,_2005_this_sequence_version_replaced_gi:53715870.COMPLETENESS:_full_length. NA 20-JAN-2012 Burkholderia_mallei_ATCC_23344_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_Q62CS4_BURMA.gb Pseudomonas_RNA_homology_group_II 77358719 Proc._Natl._Acad._Sci._U.S.A._101_(39),_14246-14251_(2004) NA NC_006349 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 15377793 1419 2 genomic_DNA 243160 ATCC_23344 NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 243160 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Structural_flexibility_in_the_Burkholderia_mallei_genome NA NC_006349.2 ATGGCTTCAACGCAAAGCGCGCCGCGCGCAACGGTGCCGGCGACGACGATCGACGCCGGCGTCATCTCGGCGCGCCTCGATCGCCTGCCGCCCACGCGCAGCGTCTGGAAACTCGTCGCGCTGCTGAGTCTCGGCTTCTTCTTCGAGCTCTACGATCTGCTGTACAGCGGCTACGTCGCGCCCGGCCTCGTGAAGGGCGGCATCCTGAGCGCGACGACGCGCGGGCTGTTCGGCACGACGGGCGTCGCGAGCTTCATCGCCGCGCTGTTCGCGGGGCTCTTCATCGGCACGATCGCGTGCGGCTTTCTCGCCGACCGCTTCGGCCGCCGCGCGGTGTTTACGTGGTCGCTGCTGTGGTACACGGCCGCGAACGTCGTGATGGCGTTCCAGGATACCGCCGGGGGCCTCAATTTCTGGCGCTTCGTCGTCGGGCTGGGGCTCGGCGTCGAAATGGTGACGATCGGCACGTATCTCTCGGAGTTGGTCCCGAAACAGATTCGCGGCCGCGCGTTCGCGTGCGAGCAGGCGGTCGGCTTCGTCGCGGTGCCCGTGGTGGCGCTGCTCGCGTATCTGCTGGTGCCGCATGCGCCGTTCGGCCTCGACGGCTGGCGCTGGGTCGTGCTGATCGGCGCGCACGGCGCGATCTTCGTCTGGTGGATTCGCCGCCAGTTGCCGGAAAGCCCGCGCTGGCTCGCGCAGCAGGGCCGGCTTGACGAAGCCGAGCGCGTGCTCGCCGCGCTCGAGGCGAAGGTCGAGGCCGAGTACGGCCGGCCGCTGCCGCCGCCCGCGCCCGCCGAGCCCATCGCGCCGCGCGGCCGGTTCGCCGACATGTGGGTGCCGCCGTACCGCAGGCGCACGGTGATGATGACGATCTTCAACGTGTTTCAGACGGTGGGCTTCTACGGCTTCGCGAACTGGGTGCCGACGCTGCTGATCAAGCAGGGGATCACCGTCACGACGAGCCTCATGTATTCGAGCGTGATCGCGCTCGCCGCGCCGATCGGGCCGTTGATCGGCCTTGCGATCGCCGACCGCTTCGAGCGCAAGACGGTGATCGTCGCGATGGCGGGCGCGGCGATGATCGCGGGGCTGCTGTTCAGCCACGCGTCGGCCGCGTGGCTGCTCGTCGCGCTCGGCGTATGCCTCACGCTCGCGAACAACATCATGTCGTACAGCTTCCATGCCTATCAGGCCGAGCTGTTTCCGACCGCGATCCGCGCGCGCGCGGTCGGCTTCGTCTATTCGTGGAGCCGCTTTTCGGCGATCTTCACGTCGTTCGCGATCGCGGCCGTGCTGAAGGGATTCGGCACGCCCGGCGTGTTCGTGTTCATCGCGGGCGCGATGGCGATCGTAATGGCGTCGATCGGGCTGATGGGGCCGCGCACGAAAGGCGTCGCGCTCGAAGCGATATCGCGTTGA > 243 BMA0350 identified_by_similarity_to_SP:Q51955;_match_to_protein_family_HMM_PF00083 4-hydroxybenzoate_transporter YP_102168.1 11 MSARHGGAPLALDIGATLDHGPFTAMQRVAVLLAAFAIVLDGFDSQLIGFAIPVLIKEWGITRDAFAPAVAAGLFGMGVGSACAGLFADRFGRRWAIIGSVFVFGAATCAIGFAPNVATIAALRFVAGLGIGGALPTATTMTAEYTPARRRTMMVTATIVCVPAGGMLAGLFAHEVLPAYGWRGLFWLGGALPLALGLLLVRALPESPRYLARNPARWRELGALLARMGRPVADGTAFTDLAEARAHEGQRRGVRALFSAAYARDTIALWCAFCMCLLAVYSAFSWLPTMLTSQGLSVSVAGSGLTAYNLGGVLGALAIGRFGSRWPLAFCCAGGAASAAWLLGVDAGSHAGWLIVGLAAHGFFVNAVQSTMYALCTFIYPTPVRATGTAGAVAFGRVGAILSAFAGAYVISAGGANAYLAMLAAAMAVVLVALLALRRHIPRLRRGGLPAADELARTAP beta_subgroup Burkholderia_mallei_ATCC_23344 Burkholderia_mallei_ATCC_23344 NC_006348 372342..373724 Nierman,W.C.,_DeShazer,D.,_Kim,H.S.,_Tettelin,H.,_Nelson,K.E.,_Feldblyum,T.,_Ulrich,R.L.,_Ronning,C.M.,_Brinkac,L.M.,_Daugherty,S.C.,_Davidsen,T.D.,_Deboy,R.T.,_Dimitrov,G.,_Dodson,R.J.,_Durkin,A.S.,_Gwinn,M.L.,_Haft,D.H.,_Khouri,H.,_Kolonay,J.F.,_Madupu,R.,_Mohammoud,Y.,_Nelson,W.C.,_Radune,D.,_Romero,C.M.,_Sarria,S.,_Selengut,J.,_Shamblin,C.,_Sullivan,S.A.,_White,O.,_Yu,Y.,_Zafar,N.,_Zhou,L._and_Fraser,C.M. NA 0:1383 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000010.On_Jan_18,_2006_this_sequence_version_replaced_gi:52350556.COMPLETENESS:_full_length. NA 20-JAN-2012 Burkholderia_mallei_ATCC_23344_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_mallei_Q62MA0_BURMA.gb Pseudomonas_RNA_homology_group_II 53723370 Proc._Natl._Acad._Sci._U.S.A._101_(39),_14246-14251_(2004) NA NC_006348 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 15377793 1383 1 genomic_DNA NA ATCC_23344 NA Pseudomonas_mallei_(Zopf_1885)_Redfearn_et_al._1966_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 243160 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Structural_flexibility_in_the_Burkholderia_mallei_genome NA NC_006348.1 ATGAGCGCCCGGCACGGCGGTGCGCCGCTTGCGCTCGATATCGGCGCGACGCTCGACCACGGTCCGTTCACCGCGATGCAGCGCGTCGCGGTGCTGCTCGCCGCGTTCGCGATCGTGCTCGACGGCTTCGACAGCCAGTTGATCGGCTTCGCGATTCCGGTGCTGATCAAGGAGTGGGGGATCACGCGCGACGCGTTCGCGCCCGCCGTCGCGGCGGGCCTGTTCGGGATGGGCGTCGGCAGCGCGTGCGCGGGCCTGTTCGCGGACCGCTTCGGCCGGCGCTGGGCGATCATCGGCAGCGTGTTCGTGTTCGGCGCGGCTACCTGCGCGATCGGCTTCGCGCCGAACGTGGCGACCATCGCCGCGCTGCGCTTCGTCGCGGGCCTCGGGATCGGCGGCGCGCTGCCCACCGCGACGACGATGACGGCCGAGTACACGCCCGCGCGCCGCCGCACGATGATGGTGACGGCGACGATCGTCTGCGTGCCGGCGGGCGGGATGCTCGCGGGCCTGTTCGCGCACGAGGTGCTGCCCGCGTACGGCTGGCGCGGCCTGTTCTGGCTCGGCGGCGCGCTGCCGCTCGCGCTCGGCTTGCTGCTCGTGCGCGCGCTGCCCGAATCGCCGCGCTATCTCGCGCGCAATCCCGCGCGCTGGCGCGAGCTCGGCGCGCTGCTCGCGCGCATGGGCCGGCCCGTCGCCGACGGCACCGCCTTCACCGATCTTGCCGAGGCGCGTGCGCACGAAGGGCAGCGGCGTGGTGTGCGTGCGCTGTTCTCGGCGGCCTACGCGCGCGACACGATCGCGTTGTGGTGCGCATTCTGCATGTGCCTGCTCGCCGTCTACAGCGCATTCAGCTGGCTGCCGACGATGCTGACGTCGCAAGGCCTGAGCGTGTCGGTCGCGGGTTCCGGGCTCACCGCATACAACCTCGGCGGCGTGCTGGGCGCGCTCGCGATCGGCCGTTTCGGTTCGCGCTGGCCGCTCGCGTTCTGCTGTGCGGGCGGCGCGGCGAGCGCCGCGTGGCTGCTCGGCGTCGATGCCGGCAGCCACGCCGGCTGGCTGATCGTCGGCCTCGCCGCGCACGGCTTCTTCGTGAACGCGGTGCAGTCGACGATGTACGCGCTCTGCACGTTCATCTATCCGACGCCCGTGCGCGCGACGGGCACCGCCGGCGCCGTCGCGTTCGGCCGCGTCGGCGCGATCCTGAGCGCGTTCGCGGGCGCGTACGTGATCTCGGCGGGCGGTGCGAACGCGTACCTGGCGATGCTCGCCGCCGCGATGGCGGTCGTGCTCGTCGCGTTGCTCGCGCTGCGCCGGCACATTCCGCGGCTGCGCCGCGGCGGGCTGCCGGCGGCCGACGAGCTCGCGCGCACCGCGCCCTGA > 244 BMULJ_04279 COG0477:_Permeases_of_the_major_facilitator_superfamily,_Escherichia_coli_O157:H7;_KEGG,_K08172 shikimate_transporter YP_001948672.1 11 MTPTFDTLDAAAGARARTQARKAAIGSFVGAVVDWYDFLLYGIVAALVFNAEFFPKVSPTMGTLAAFATFGVGFLFRPLGGVVFGHYGDRLGRKRMLVLTVMLMGLSTVAIGLLPTFATIGWWAPVLLVAMRAIQGFAVGGEWGGAALMAVESAPKQKKAFYSSGVQVGYGVGLVLATGIVSILSHTLGDAAFKTWGWRLPFVFSIVLVLIGLWVRKSMDESQEFVEKVEHGHRKLRLPVLEALTRHPKAFLLIVALRLAELFTMYIVTAFALSYSTSNLGMSRDLFLNIGLLVGAVSCVTIPCFAWLADRFGLRRIYLIGALIGLASAVPFFVALESRSIAWIVLFSILLANAAHDMVVSVQQPLFTELFGAEYRYSGAGVGYQFASVVGGGFTPFIAVGLVSLAGGSWHLVAGYLAAGCLISLVVAARMRAAG beta_subgroup Burkholderia_multivorans_ATCC_17616 Burkholderia_multivorans_ATCC_17616 NC_010805 1211754..1213061 Ohtsubo,Y.,_Yamashita,A.,_Kurokawa,K.,_Takami,H.,_Yuhara,S.,_Nishiyama,E.,_Endo,R.,_Miyazaki,R.,_Ono,A.,_Yano,K.,_Ito,M.,_Sota,M.,_Yuji,N.,_Hattori,M._and_Tsuda,M. NA 0:1308 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AP009386.COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_multivorans_ATCC_17616_chromosome_2,_complete_genome. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_multivorans_A9AKD5_BURM1.gb Pseudomonas_RNA_homology_group_II 189351978 Unpublished NA NC_010805 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1308 2 genomic_DNA NA ATCC_17616 NA Burkholderia_multivorans_Vandamme_et_al._1997 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 395019 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_genome_sequence_of_Burkholderia_multivorans_ATCC_17616 NA NC_010805.1 TCAGCCCGCAGCCCGCATCCGCGCCGCCACCACGAGCGAAATCAGGCAGCCGGCCGCGAGATAACCGGCGACGAGGTGCCACGAGCCGCCGGCCAGGCTGACGAGGCCGACCGCGATGAACGGCGTGAACCCGCCGCCGACGACGCTCGCGAACTGGTAGCCGACGCCCGCGCCGCTGTATCGATACTCGGCGCCGAACAGTTCGGTGAACAGCGGCTGCTGGACGCTGACGACCATGTCGTGCGCCGCGTTCGCGAGCAGGATCGAGAACAGCACGATCCACGCGATCGACCGCGACTCGAGCGCGACGAAGAACGGCACCGCCGATGCAAGGCCGATCAGCGCGCCGATCAAATAGATGCGGCGCAGCCCGAAGCGATCGGCGAGCCACGCGAAGCACGGAATCGTCACGCAGCTCACCGCGCCGACCAGCAGCCCGATGTTCAGGAACAGATCGCGCGACATGCCGAGGTTCGACGTCGAATAGCTGAGCGCGAACGCGGTGACGATGTACATCGTGAACAGCTCCGCGAGCCGCAGCGCGACGATCAGCAGAAACGCCTTCGGATGACGCGTCAGCGCTTCCAGCACAGGCAGCCGCAGCTTGCGGTGGCCGTGCTCGACCTTCTCGACGAACTCCTGCGACTCGTCCATGCTCTTGCGCACCCACAGCCCGATCAGCACCAGCACGATGCTGAACACGAACGGCAGGCGCCAGCCCCAGGTTTTGAACGCGGCGTCGCCGAGCGTGTGGCTCAGAATCGACACGATGCCGGTGGCGAGCACCAGCCCGACGCCGTAGCCGACCTGGACGCCGCTGCTGTAGAACGCCTTCTTCTGCTTCGGCGCACTTTCGACGGCCATCAGCGCCGCGCCGCCCCATTCGCCGCCGACCGCGAAGCCCTGGATCGCGCGCATCGCGACCAGCAGCACGGGCGCCCACCAGCCGATCGTCGCGAACGTGGGCAGCAGCCCGATCGCGACCGTCGACAGCCCCATCAGCATCACGGTCAGCACGAGCATTCGCTTGCGGCCGAGCCGGTCGCCGTAATGGCCGAACACGACGCCGCCGAGCGGACGGAACAGGAAGCCGACGCCGAATGTCGCGAACGCCGCGAGCGTCCCCATCGTCGGGCTTACTTTCGGAAAGAACTCGGCGTTGAATACGAGCGCGGCGACAATCCCGTACAGCAGGAAGTCGTACCAGTCGACGACGGCGCCGACGAAGCTGCCGATCGCGGCCTTGCGGGCCTGGGTGCGCGCCCGGGCGCCGGCAGCGGCGTCGAGGGTGTCGAAGGTCGGGGTCAT > 245 BURMUCGD1_4123 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_superfamily_MFS_1 EEE02937.1 11 MSTFDNVVAGRATMEAAASTPGAIIARLERLPANAMQIRARVLIGTATFFDGFDVITIAATLPLLIHKWGLSPTQIGMLIASGAIGQLIGAFLFPALAEKHGRVKAIAWSSAVIGITSIACGFAPTFEVFVLLRILQGLGLGGELPVAATYINEITRAHGRGRFVLLYEIVFPIGLLVSMALGAWLVPRFGWEIMYFVGGLPLLLALVLTHVVPESPRWLASRGRLAEAGRAVSAFETSVRGELPPVTQTAAFDEMVRQHPKRRMLDLFSRAYRKRTLAIATLWATCGFIQYGLSTWLPTIYKNFYHAPLQLALNLAVIGSVMGVLGSLASALLVDKLGRKPVIVWSFVLCALSLALAGIYHASSVYVVATFCSLSLGLMASGFITAYVYTPEQYPTSIRASGCGLGSAWLKIASFAAPMIVPHAIIGGDLSPAFYLLGAVPLIAAVTVYFVGIETKGKVLEALEA beta_subgroup Burkholderia_multivorans_CGD1 Burkholderia_multivorans_CGD1 ACFB01000001 529951..531351 Holland,S.M.,_Harkins,D.M.,_Brinkac,L.M.,_Hostetler,J._and_Nierman,W.C. NA 0:1401 Genomic_DNA_was_provided_by_Dr._Steven_Holland,_NIAID_BethesdaAssembly_name:_JCVI-gbv1-v1.0Genome_coverage:_14xSequencing_technology:_454;_ABI. NA 22-JAN-2009 Burkholderia_multivorans_CGD1_gcontig_1113107088548,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_multivorans_B9AZJ9_9BURK.gb Pseudomonas_RNA_homology_group_II 221169955 Submitted_(08-JAN-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA ACFB01000001 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1401 NA genomic_DNA NA CGD1 NA Burkholderia_multivorans_Vandamme_et_al._1997 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 513051 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Direct_Submission NA ACFB01000001.1 ATGAGCACTTTCGACAACGTCGTGGCCGGTCGGGCCACGATGGAAGCTGCCGCCTCCACGCCCGGCGCGATCATCGCGCGGCTCGAGCGGCTTCCGGCCAATGCGATGCAGATCCGCGCGCGCGTGCTGATCGGCACCGCGACGTTCTTCGACGGCTTCGACGTGATCACGATCGCGGCGACGCTGCCGCTGCTGATTCACAAGTGGGGCTTGTCGCCGACGCAGATCGGCATGCTGATCGCGTCCGGCGCGATCGGTCAGCTGATCGGCGCGTTCCTGTTTCCCGCACTCGCGGAAAAGCATGGCCGCGTGAAGGCGATCGCGTGGAGCTCGGCCGTGATCGGCATCACGAGCATCGCCTGCGGCTTCGCGCCGACGTTCGAGGTGTTCGTGCTGCTGCGTATCCTGCAAGGGCTCGGGCTCGGCGGCGAATTGCCGGTCGCCGCGACCTACATCAACGAGATCACGCGCGCGCATGGCCGCGGCCGTTTCGTGCTGCTGTACGAAATCGTGTTCCCGATCGGCCTGCTCGTGTCGATGGCGCTCGGCGCGTGGCTCGTGCCGCGCTTCGGCTGGGAGATCATGTACTTCGTCGGCGGGTTGCCGCTGCTGCTCGCGCTCGTGCTCACGCACGTCGTGCCCGAGTCGCCGCGCTGGCTCGCGTCGCGCGGGCGGCTGGCCGAAGCCGGCCGCGCCGTGAGCGCGTTCGAGACCTCGGTGCGCGGCGAGCTGCCGCCCGTCACGCAGACGGCCGCGTTCGACGAAATGGTGCGCCAGCATCCGAAGCGCCGGATGCTCGACCTGTTCAGCCGCGCGTACCGCAAGCGCACGCTCGCGATCGCGACGCTGTGGGCGACCTGCGGGTTCATCCAGTACGGGCTGTCGACGTGGCTGCCGACGATCTACAAGAACTTCTATCATGCGCCGCTGCAACTCGCGCTGAACCTCGCGGTGATCGGCTCGGTGATGGGCGTGCTCGGTTCGCTGGCCTCCGCGCTGCTCGTCGACAAGCTTGGCCGCAAGCCGGTGATCGTGTGGTCGTTCGTGCTGTGCGCACTGTCGCTGGCGCTCGCGGGCATCTATCACGCATCGTCGGTGTACGTCGTCGCGACGTTCTGCTCGCTGTCGCTCGGTCTGATGGCGTCGGGCTTCATTACCGCGTACGTCTATACGCCGGAGCAGTATCCGACCAGCATCCGCGCGTCGGGCTGCGGGCTCGGCAGCGCGTGGCTGAAGATCGCATCGTTCGCGGCGCCGATGATCGTCCCGCACGCGATCATCGGCGGCGATCTGAGCCCGGCGTTCTATCTGCTCGGCGCGGTGCCGCTGATTGCGGCCGTCACCGTGTACTTCGTCGGGATCGAGACGAAGGGCAAGGTGCTCGAAGCGCTCGAGGCGTAA > 246 BURMUCGD1_0632 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_superfamily EEE01235.1 11 MPQFRRAWPAHGCAARGMEARMSTRDDATAPAVDIGATLDDGPFTTMQKCVVLLAALSIVLDGFDGQLIGFAIPVLIKEWGITRGAFAPAVAAGLIGMGIGSACAGLVADRFGRRGAVLGSVFLFGAATCAIGLAHNVETIAALRFVAGLGIGGALPTATTMTAEYTPARRRTMMVTATIVCVPLGGMLAGLFAHEVLPRYGWRTLFFAGGALPLVLGFVLAAALPESPRYLARRPARWAELGALLARMKRPVAPGTVFTDLKDAQAHGGSGGFRSLFAGGQARDTIALWCAFFMCLLAVYAAFSWLPTMLAASGLSVSLAGAGLTAYNLGGVIGALLCAWTISRVGSRWPLVLCSVGGAASALWLMSVDAGSHTRWLIVGLGAHGLFVNAVQSTMYALCAYIYPTAVRATGTASALAFGRLGAILSAFAGAFVITTGGATAYLTMLAAAMGIVCVALLVVRRHIPKLSREPAQPREREELVRTSP beta_subgroup Burkholderia_multivorans_CGD1 Burkholderia_multivorans_CGD1 ACFB01000003 413943..415403 Holland,S.M.,_Harkins,D.M.,_Brinkac,L.M.,_Hostetler,J._and_Nierman,W.C. NA 0:1461 Genomic_DNA_was_provided_by_Dr._Steven_Holland,_NIAID_BethesdaAssembly_name:_JCVI-gbv1-v1.0Genome_coverage:_14xSequencing_technology:_454;_ABI. NA 22-JAN-2009 Burkholderia_multivorans_CGD1_gcontig_1113107088338,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_multivorans_B9B470_9BURK.gb Pseudomonas_RNA_homology_group_II 221168360 Submitted_(08-JAN-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA ACFB01000003 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1461 NA genomic_DNA NA CGD1 NA Burkholderia_multivorans_Vandamme_et_al._1997 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 513051 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Direct_Submission NA ACFB01000003.1 TTGCCGCAGTTTCGCCGCGCATGGCCTGCGCACGGTTGCGCCGCGCGCGGGATGGAGGCACGCATGAGCACGCGCGACGACGCCACCGCGCCCGCCGTCGACATCGGCGCGACGCTCGACGACGGTCCGTTTACGACGATGCAGAAATGCGTGGTGCTGCTGGCCGCGCTCTCGATCGTGCTCGACGGCTTCGACGGCCAGCTGATCGGCTTCGCGATTCCGGTGCTGATCAAGGAATGGGGCATCACGCGCGGCGCCTTCGCGCCGGCCGTCGCGGCCGGGCTGATCGGGATGGGGATCGGCAGCGCCTGCGCGGGGCTCGTCGCCGACCGTTTCGGCCGGCGCGGCGCGGTGCTGGGCAGCGTGTTCCTGTTCGGCGCGGCGACCTGCGCGATCGGGCTCGCGCACAACGTCGAGACGATCGCCGCGCTGCGCTTCGTCGCCGGTCTCGGCATCGGCGGCGCATTGCCGACCGCGACCACGATGACCGCCGAATACACGCCCGCGCGGCGCCGCACGATGATGGTCACCGCGACGATCGTCTGCGTGCCGCTCGGCGGCATGCTCGCCGGCCTGTTCGCGCACGAGGTGCTGCCGCGCTACGGGTGGCGCACGCTGTTCTTCGCGGGCGGCGCGCTGCCGCTCGTGCTCGGCTTCGTGCTGGCGGCGGCGTTGCCCGAATCGCCGCGCTATCTCGCGCGGCGTCCCGCACGCTGGGCCGAGCTCGGCGCGCTGCTGGCGCGCATGAAGCGTCCGGTCGCTCCGGGCACCGTGTTCACCGATCTGAAGGACGCGCAGGCGCACGGCGGCAGCGGCGGGTTCCGCTCGCTGTTCGCGGGCGGCCAGGCGCGCGACACGATCGCGCTGTGGTGCGCGTTCTTCATGTGTCTGCTCGCCGTGTATGCGGCCTTCAGCTGGCTGCCGACGATGCTCGCCGCGAGCGGGCTCAGCGTGTCGCTCGCAGGCGCGGGGCTCACCGCATACAACCTCGGCGGCGTGATCGGCGCGCTGCTGTGCGCATGGACGATCTCACGTGTCGGTTCGCGCTGGCCGCTCGTGCTGTGCAGCGTCGGCGGTGCGGCGAGCGCGCTGTGGCTGATGAGTGTCGATGCGGGCAGCCACACGCGCTGGCTGATCGTCGGCCTCGGCGCGCACGGCCTGTTCGTCAATGCGGTGCAGTCGACGATGTATGCGCTTTGCGCGTACATCTATCCGACGGCCGTGCGCGCGACCGGCACCGCCAGCGCGCTCGCGTTCGGCAGGCTCGGTGCGATCCTCAGCGCGTTCGCCGGTGCGTTCGTGATCACGACGGGCGGCGCGACCGCGTATCTGACGATGCTGGCGGCCGCGATGGGCATCGTCTGCGTCGCGCTGCTGGTCGTGCGGCGGCATATCCCTAAGCTGTCGCGCGAGCCGGCGCAGCCGCGCGAGCGGGAGGAACTGGTTCGCACGTCGCCGTGA > 247 BURMUCGD1_4756 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 shikimate_transporter EEE00188.1 11 MQTRSTLDEHATAALPAPARTARHHLLAGWASMAGTTIEWYDFFLYGTAAALVFNRIFFPSLDPVVGTLAAFGTFAVGFIGRPMGGIVFGHFGDRIGRKSMLMITLLLMGVPSMIIGLIPSYDRIGYWAAALLIAMRFLQGMAVGGEWGGAVLMAVEHAPKGRKGLFGSLPQTGVGLGLILSSLAMAAVAALPEADMLSWGWRVPFLASIALVGLGWFIRAKVPESPDFEKMQRQGKAEKSPVTAALRRHPREVLTIVGARAAENTWFYMVVTFALSYATQQLHLPKAEMLHAITAGALLSLVTMPLCGHLSDLIGQRRMFAIGLVLMCVFAAPFFMMLGTQQTALAWWAIVLGLGVVFPILYAPESLLFAQQFPAEIRYSGISLSVQLAGVIGGGFAPMIATSLLKAGGGQPHYVIAYLVGFGVFALVCTALMRPARH beta_subgroup Burkholderia_multivorans_CGD1 Burkholderia_multivorans_CGD1 ACFB01000005 342865..344184 Holland,S.M.,_Harkins,D.M.,_Brinkac,L.M.,_Hostetler,J._and_Nierman,W.C. NA 0:1320 Genomic_DNA_was_provided_by_Dr._Steven_Holland,_NIAID_BethesdaAssembly_name:_JCVI-gbv1-v1.0Genome_coverage:_14xSequencing_technology:_454;_ABI. NA 22-JAN-2009 Burkholderia_multivorans_CGD1_gcontig_1113107088300,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_multivorans_B9B6P3_9BURK.gb Pseudomonas_RNA_homology_group_II 221167374 Submitted_(08-JAN-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA ACFB01000005 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1320 NA genomic_DNA NA CGD1 NA Burkholderia_multivorans_Vandamme_et_al._1997 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 513051 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Direct_Submission NA ACFB01000005.1 TCAGTGGCGTGCGGGACGCATCAGCGCCGTGCACACGAGCGCGAACACGCCGAAGCCGACGAGATACGCGATGACGTAGTGCGGCTGACCTCCGCCGGCCTTGAGCAGCGAGGTCGCGATCATCGGCGCGAAACCGCCGCCGATCACGCCGGCGAGCTGGACCGACAGCGAGATGCCGCTGTAGCGGATTTCGGCGGGGAACTGCTGCGCGAACAGCAGCGATTCGGGTGCGTACAGAATCGGAAACACGACGCCGAGCCCGAGCACGATCGCCCACCATGCGAGCGCGGTCTGCTGCGTGCCGAGCATCATGAAGAACGGTGCGGCGAACACGCACATCAGCACGAGCCCGATCGCGAACATCCGGCGCTGGCCGATCAGGTCGCTCAGATGGCCGCACAGCGGCATCGTGACGAGCGACAGCAGCGCGCCGGCCGTGATCGCGTGCAGCATCTCGGCCTTCGGCAGATGGAGCTGCTGCGTCGCATACGACAGCGCGAACGTGACGACCATGTAGAACCAGGTGTTCTCGGCCGCACGCGCGCCGACGATCGTCAGCACTTCACGCGGATGGCGGCGCAGCGCGGCCGTCACCGGCGATTTCTCGGCCTTGCCCTGGCGCTGCATCTTCTCGAAGTCGGGCGATTCCGGCACCTTCGCGCGGATGAACCAGCCGAGGCCGACCAGCGCGATGCTCGCGAGGAACGGCACGCGCCAGCCCCACGACAGCATGTCGGCTTCCGGCAGCGCGGCGACCGCGGCCATCGCGAGCGACGAGAGGATCAGGCCGAGCCCGACGCCCGTCTGCGGCAGGCTGCCGAACAGCCCCTTGCGGCCCTTCGGCGCATGCTCGACGGCCATCAGCACCGCGCCGCCCCATTCGCCGCCGACCGCCATCCCCTGCAGGAAGCGCATCGCGATCAGCAGTGCGGCGGCCCAGTAGCCGATGCGGTCGTACGACGGGATCAGCCCGATGATCATGCTCGGCACGCCCATCAGCAGCAGCGTGATCATCAGCATCGACTTGCGGCCGATGCGGTCGCCGAAGTGGCCGAACACGATGCCGCCCATCGGCCGCCCGATGAAGCCGACCGCGAACGTGCCGAACGCGGCCAGCGTACCGACGACTGGGTCGAGCGACGGAAAGAAGATGCGGTTGAACACGAGCGCGGCGGCGGTGCCGTAGAGGAAGAAGTCGTACCACTCGATCGTCGTGCCGGCCATGCTGGCCCAGCCCGCCAGCAGGTGATGCCGCGCGGTGCGCGCGGGGGCCGGCAGCGCGGCGGTTGCATGCTCGTCGAGCGTGGATCGCGTCTGCAT > 248 BURMUCGD1_4739 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 shikimate_transporter EEE00205.1 11 MAIDSRVVRRVAAASVIGATVEWYDFFLYGVVAGIVFDKQYFPADDAFVSTMLAYATFAVGFITRPLGGLLFGHLGDRVGRKSALILTMLIMGVSTAGVAFLPTYAQIGMWAPALLLTLRVLQGIGLGGEWGGAVLMAYEYAPPHRRGLYASLPQIGLAIGLCLAAGVVAALSRVLPDAAFLSWGWRIAFAASLLLVAVGFYIRTRVADTPEFVALKRQRRDTKLPVVELLGSYRRAILLGMGARYIDGVFFNVFAVFSIGYMTRNLSISRGDALLGVMSAAVVMCAFIPVFGSLSDRLGRARVYRWGATLCGLSVLPAFWLLHAHSTNLLAVWLALVIPFGIFYAMAYGPEAALFAELFNANVRYTGISFVYQVSGIFASGMTPIVATALLRANGGEPWLVGVYVMLCALLSIVSARAIEKSGGVAGVAVRAT beta_subgroup Burkholderia_multivorans_CGD1 Burkholderia_multivorans_CGD1 ACFB01000005 359315..360619 Holland,S.M.,_Harkins,D.M.,_Brinkac,L.M.,_Hostetler,J._and_Nierman,W.C. NA 0:1305 Genomic_DNA_was_provided_by_Dr._Steven_Holland,_NIAID_BethesdaAssembly_name:_JCVI-gbv1-v1.0Genome_coverage:_14xSequencing_technology:_454;_ABI. NA 22-JAN-2009 Burkholderia_multivorans_CGD1_gcontig_1113107088300,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_multivorans_B9B6R0_9BURK.gb Pseudomonas_RNA_homology_group_II 221167374 Submitted_(08-JAN-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA ACFB01000005 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1305 NA genomic_DNA NA CGD1 NA Burkholderia_multivorans_Vandamme_et_al._1997 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 513051 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Direct_Submission NA ACFB01000005.1 ATGGCAATCGATTCCCGGGTCGTCCGCCGCGTGGCCGCGGCCAGCGTGATCGGCGCGACGGTCGAGTGGTACGACTTTTTCCTGTACGGCGTCGTCGCCGGCATCGTGTTCGACAAGCAGTATTTCCCGGCCGACGATGCGTTCGTGTCGACGATGCTCGCGTATGCGACGTTCGCGGTCGGCTTCATCACGCGGCCGCTCGGCGGCCTCTTGTTCGGCCATCTCGGCGACCGCGTCGGCCGCAAGTCCGCGCTGATTCTGACGATGCTGATCATGGGCGTGTCGACGGCCGGCGTCGCGTTCCTGCCCACCTATGCGCAGATCGGCATGTGGGCGCCCGCGCTGCTCTTGACGCTGCGCGTGCTGCAGGGGATCGGCCTCGGCGGCGAGTGGGGCGGCGCGGTGCTGATGGCGTACGAATACGCGCCGCCGCATCGGCGCGGGCTCTATGCGAGCCTGCCGCAGATCGGGCTCGCGATCGGGCTGTGTCTCGCGGCCGGCGTCGTCGCCGCGCTGTCGCGCGTGCTGCCGGACGCCGCGTTCCTGTCGTGGGGCTGGCGCATCGCATTCGCGGCATCGCTGCTGCTCGTCGCGGTCGGCTTCTATATCCGCACGCGCGTGGCCGATACGCCCGAGTTCGTCGCGCTGAAACGGCAGCGGCGCGACACGAAGCTGCCGGTCGTCGAACTGCTCGGCAGCTATCGTCGCGCGATCCTGCTCGGCATGGGCGCGCGCTACATCGACGGCGTGTTCTTCAACGTGTTCGCGGTGTTCTCGATCGGCTACATGACGCGCAATCTGTCGATCTCGCGCGGCGACGCGCTGCTCGGCGTGATGAGCGCGGCGGTCGTGATGTGCGCGTTCATTCCGGTGTTCGGCAGCCTGTCCGACCGGCTCGGCCGCGCGCGCGTGTACCGCTGGGGCGCGACGCTTTGCGGGCTGTCGGTGCTGCCGGCGTTCTGGCTGCTGCACGCGCATTCGACGAACCTGCTCGCGGTGTGGCTCGCGCTCGTGATTCCGTTCGGGATTTTCTATGCGATGGCGTACGGGCCCGAGGCCGCGCTGTTTGCCGAGCTGTTCAACGCGAATGTCCGCTATACGGGCATTTCGTTCGTCTATCAGGTGTCGGGCATCTTCGCGAGCGGCATGACGCCGATCGTTGCGACCGCGCTGCTGCGCGCGAACGGCGGCGAGCCGTGGCTCGTCGGGGTTTACGTGATGCTCTGCGCACTGCTGTCGATCGTGTCTGCGCGCGCGATCGAGAAAAGCGGCGGTGTGGCCGGCGTCGCGGTGCGCGCGACCTGA > 249 BURMUCGD1_1587 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_superfamily_MFS_1 EED99569.1 11 MTSPSLDLGGRAAPPAPASPPAARSAAEPAPVPAREVTLGAFMDDLPVGALHRFVVWVIGIGLFFDMYEIFLVSTIGSALQSEFGLNRESADFKLLLASAFIGMFVGAMCLGSVADRIGRRRAFLLTLVWYSAFSLIGAFAVNADMLVACRFLTGIGVGAIYPVADSFLSEILPKDKRGRLAAWAYTTSYVAVPLVGFLALWLNPLHVGSVAGWRIILAIGSLGAVYVLLVRHRLPESPRWLLAQGRDDEAYATLRRFAASAGVRMPERFAAPVEPQRPLALGERLALLRRRPYGARYAMLVIFHLFQGFGYYGFGTLAGVVVKSRGFDVTDSTLFLALSFLGYPLGSLLSIPLLHRIERRTLVIASILSIAAFGLCFAYSNHTVLIVCFGVLTTCASNVFSNAYHVYQAEIFPARVRSTAIGSTYALSRIVSGALPFVLLPVLVRGGAGAMFGTISVALAIVAITLRVLGPLTTRRSQDEINPV beta_subgroup Burkholderia_multivorans_CGD1 Burkholderia_multivorans_CGD1 ACFB01000006 130102..131559 Holland,S.M.,_Harkins,D.M.,_Brinkac,L.M.,_Hostetler,J._and_Nierman,W.C. NA 0:1458 Genomic_DNA_was_provided_by_Dr._Steven_Holland,_NIAID_BethesdaAssembly_name:_JCVI-gbv1-v1.0Genome_coverage:_14xSequencing_technology:_454;_ABI. NA 22-JAN-2009 Burkholderia_multivorans_CGD1_gcontig_1113107088654,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_multivorans_B9B8E7_9BURK.gb Pseudomonas_RNA_homology_group_II 221166966 Submitted_(08-JAN-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA ACFB01000006 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1458 NA genomic_DNA NA CGD1 NA Burkholderia_multivorans_Vandamme_et_al._1997 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 513051 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Direct_Submission NA ACFB01000006.1 ATGACCAGCCCTTCCCTCGATCTCGGCGGCCGCGCGGCGCCGCCCGCACCCGCGTCCCCGCCTGCCGCCCGCTCCGCCGCCGAGCCGGCGCCCGTTCCTGCGCGCGAGGTCACGCTCGGCGCTTTCATGGACGACCTGCCGGTCGGCGCGCTGCACCGGTTCGTCGTCTGGGTGATCGGGATCGGCCTGTTCTTCGACATGTACGAGATCTTTCTCGTCAGCACGATCGGCTCCGCGCTGCAAAGCGAATTCGGGCTGAACCGCGAGAGTGCCGATTTCAAGCTGCTGCTCGCCTCCGCGTTCATCGGGATGTTCGTCGGCGCGATGTGTCTCGGCAGCGTCGCGGATCGTATCGGGCGCCGTCGCGCGTTTCTGCTGACGCTCGTCTGGTACAGCGCGTTCTCGCTGATCGGCGCGTTCGCGGTAAACGCCGACATGCTCGTCGCGTGCCGCTTCCTGACCGGCATCGGCGTCGGCGCGATCTACCCGGTCGCGGACAGCTTCCTGTCCGAAATCCTGCCGAAGGACAAGCGCGGCCGGCTCGCGGCGTGGGCGTACACGACGTCGTATGTCGCCGTGCCGCTCGTCGGCTTTCTCGCGCTGTGGCTGAACCCGCTGCACGTCGGCAGCGTGGCCGGCTGGCGAATCATTCTGGCGATTGGCAGCCTCGGTGCGGTGTACGTGTTGCTCGTACGGCATCGGCTGCCGGAAAGCCCGCGCTGGCTGCTCGCGCAGGGGCGCGACGACGAAGCGTACGCGACGCTACGGCGCTTCGCGGCCAGCGCCGGCGTACGCATGCCCGAACGCTTCGCCGCGCCCGTCGAACCGCAGCGGCCGCTCGCGCTCGGCGAACGCCTCGCGTTGCTGCGCCGCCGGCCGTACGGCGCGCGCTATGCGATGCTCGTGATCTTCCACCTGTTTCAGGGCTTCGGCTACTACGGCTTCGGCACGCTCGCGGGTGTCGTCGTCAAAAGCCGCGGCTTCGACGTGACGGACAGCACGCTGTTCCTCGCGCTGTCGTTTCTCGGCTATCCGCTCGGCTCGCTGCTGTCGATTCCGTTGCTCCATCGCATCGAGCGCCGCACGCTCGTGATCGCGTCGATCCTGTCGATCGCCGCGTTCGGGCTCTGTTTCGCGTATTCGAACCATACGGTGCTGATCGTCTGCTTCGGCGTATTGACGACCTGCGCGTCGAACGTGTTCAGCAACGCGTATCACGTCTATCAGGCCGAGATCTTTCCCGCACGCGTGAGGTCGACGGCGATCGGCAGCACGTACGCGCTGTCGCGCATCGTCAGCGGCGCGCTGCCGTTCGTGCTGCTGCCGGTGCTCGTGCGCGGGGGCGCGGGCGCGATGTTCGGCACGATCTCGGTCGCGCTCGCGATCGTCGCGATCACGCTGCGCGTGCTCGGGCCGTTGACCACGCGCCGTAGTCAGGACGAGATCAATCCGGTGTGA > 250 BURMUCGD2_4497 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_superfamily_MFS_1 EEE09125.1 11 MSTFDNVVAGRAAMEAAASTPGAIIARLERLPANAMQIRARILIGTATFFDGFDVITIAATLPLLIHKWGLSPTQIGMLIASGAIGQLIGAFLFPALAEKHGRVKAIAWSSAVIGITSIACGFAPTFEVFVLLRILQGLGLGGELPVAATYINEITRAHGRGRFVLLYEIVFPIGLLVSMALGAWLVPRFGWEIMYFVGGLPLLLALVLTHVVPESPRWLASRGRLAEAGRAVSAFETSVRGELPPVTQTAAFDEMVRQHPKRRMLDLFSRAYRKRTLAIATLWATCGFIQYGLSTWLPTIYKNFYHAPLQLALNLAVIGSVMGVLGSLASALLVDKLGRKPVIVWSFVLCALSLALAGIYHASSVYVVATFCSLSLGLMASGFITAYVYTPEQYPTSIRASGCGLGSAWLKIASFAAPMIVPHAIIGGDLSPAFYLLGAVPLIAAVTVYFVGIETKGKVLEALEA beta_subgroup Burkholderia_multivorans_CGD2 Burkholderia_multivorans_CGD2 ACFC01000001 179564..180964 Holland,S.M.,_Harkins,D.M.,_Brinkac,L.M.,_Hostetler,J._and_Nierman,W.C. NA 0:1401 Genomic_DNA_was_provided_by_Dr._Steven_Holland,_NIAID_BethesdaAssembly_name:_JCVI-gbv2-v1.0Genome_coverage:_14.5xSequencing_technology:_454;_ABI. NA 22-JAN-2009 Burkholderia_multivorans_CGD2_gcontig_1113103761647,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_multivorans_B9BHC8_9BURK.gb Pseudomonas_RNA_homology_group_II 221176510 Submitted_(08-JAN-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA ACFC01000001 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1401 NA genomic_DNA NA CGD2 NA Burkholderia_multivorans_Vandamme_et_al._1997 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 513052 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Direct_Submission NA ACFC01000001.1 ATGAGCACTTTCGACAACGTCGTGGCCGGTCGGGCCGCGATGGAAGCTGCCGCCTCCACGCCCGGCGCGATCATCGCGCGGCTCGAGCGGCTTCCGGCCAATGCGATGCAAATCCGCGCGCGCATACTGATCGGTACCGCGACGTTCTTCGACGGCTTCGACGTGATCACGATCGCGGCGACGCTGCCGCTGCTGATTCACAAGTGGGGCTTGTCGCCGACGCAGATCGGCATGCTGATCGCATCGGGCGCGATCGGTCAGCTGATCGGCGCCTTCCTGTTTCCCGCACTCGCGGAAAAGCACGGCCGCGTGAAGGCGATCGCGTGGAGCTCGGCCGTGATCGGCATCACGAGCATCGCCTGCGGCTTCGCGCCGACGTTCGAAGTATTCGTGCTGCTGCGGATCCTGCAGGGGCTCGGGCTCGGCGGTGAATTGCCGGTCGCCGCGACCTACATCAACGAGATCACGCGCGCACATGGCCGCGGCCGTTTCGTGCTGCTGTACGAGATCGTGTTCCCGATCGGTCTGCTCGTGTCGATGGCGCTCGGCGCGTGGCTCGTGCCGCGCTTCGGCTGGGAGATCATGTACTTCGTCGGCGGGTTGCCGCTGCTGCTGGCGCTCGTGCTCACGCACGTCGTGCCCGAGTCGCCTCGCTGGCTCGCGTCGCGCGGGCGGCTGGCCGAAGCCGGCCGCGCCGTGAGCGCGTTCGAGACGTCGGTGCGCGGCGAGCTGCCGCCCGTCACGCAGACGGCCGCGTTCGACGAAATGGTGCGCCAGCATCCGAAGCGCCGGATGCTCGACCTGTTCAGCCGCGCGTACCGCAAGCGCACGCTCGCGATCGCGACGCTGTGGGCAACCTGCGGGTTCATCCAGTACGGGCTGTCGACGTGGCTGCCGACCATCTACAAGAACTTCTATCACGCACCGCTGCAGCTCGCGCTGAATCTCGCGGTGATCGGCTCGGTGATGGGCGTGCTCGGTTCGCTCGCGTCGGCGCTGCTCGTCGACAAGCTCGGCCGAAAGCCGGTGATCGTGTGGTCGTTCGTGCTGTGCGCACTGTCGCTGGCGCTCGCGGGCATCTATCACGCATCGTCGGTCTACGTCGTCGCGACGTTCTGCTCGCTGTCGCTCGGTCTGATGGCGTCGGGCTTCATTACCGCGTACGTCTATACGCCGGAGCAGTATCCGACGAGCATCCGCGCGTCGGGCTGCGGGCTCGGCAGCGCGTGGCTGAAGATCGCATCGTTCGCGGCGCCGATGATCGTCCCGCACGCGATCATTGGCGGCGATCTGAGCCCGGCGTTCTATCTGCTCGGCGCGGTGCCGCTGATTGCGGCCGTTACCGTGTACTTCGTCGGGATCGAGACGAAGGGCAAGGTGCTCGAAGCGCTCGAGGCGTAA > 251 BURMUCGD2_0790 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EEE05796.1 11 MTARAAREPQPGHQPKKAAASGWIGSALEYYDFFIYATAAALIFPQIFFPKGDPTTAIVASLATYGVGYVARPIGAFVLGHLGDTHGRKTVLLSCMFLMGFATIGVGLLPTYDQIGLLAPVLLVILRLIQGFAVAGEISGASSMILEHAPFGRRGFFSSFTLQGVQAGQVLAAAVFLPLAHYMPAEQFNSWGWRIPFLLSVVVIFAGWAIRRNVTETPAFTGEEARQTRARSPVVEAFRFHWADMLRVVCMSLMNVIPVVATIFGAAYAVQPAYGIGFAKDVYLWIPVAGNIVAVLVIPYVGSLSDRIGRKPPIVFGALLSGLLAFAYLYAISIQSVPLAFAMSLLMWGAVYQGYNAVFPSFYPELFPTRTRVSAMAIAQNVGTAITAMLPALFTAVAPPGATHIWLTVGAIAFGITVIAALAALSARETYRIAMSELGRRDAEPVDKTEYDRRRAQAPAA beta_subgroup Burkholderia_multivorans_CGD2 Burkholderia_multivorans_CGD2 ACFC01000008 122437..123822 Holland,S.M.,_Harkins,D.M.,_Brinkac,L.M.,_Hostetler,J._and_Nierman,W.C. NA 0:1386 Genomic_DNA_was_provided_by_Dr._Steven_Holland,_NIAID_BethesdaAssembly_name:_JCVI-gbv2-v1.0Genome_coverage:_14.5xSequencing_technology:_454;_ABI. NA 22-JAN-2009 Burkholderia_multivorans_CGD2_gcontig_1113103761763,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_multivorans_B9BTM8_9BURK.gb Pseudomonas_RNA_homology_group_II 221173237 Submitted_(08-JAN-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA ACFC01000008 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1386 NA genomic_DNA NA CGD2 NA Burkholderia_multivorans_Vandamme_et_al._1997 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 513052 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Direct_Submission NA ACFC01000008.1 ATGACCGCACGCGCGGCCCGCGAACCCCAACCCGGACACCAGCCGAAGAAGGCCGCCGCGAGCGGCTGGATCGGCTCGGCGCTCGAGTACTACGACTTCTTCATCTACGCGACGGCGGCAGCGCTGATCTTCCCGCAGATCTTCTTTCCGAAAGGCGATCCGACCACCGCGATCGTCGCGTCGCTCGCGACCTACGGCGTCGGCTATGTCGCGCGGCCGATCGGCGCATTCGTGCTCGGCCACCTCGGCGACACGCACGGTCGCAAGACGGTGCTGCTCTCGTGCATGTTCCTGATGGGCTTTGCGACGATCGGCGTCGGCCTGCTGCCGACCTACGATCAGATCGGCCTGCTGGCGCCGGTCCTGCTCGTGATCCTGCGGCTGATTCAGGGCTTTGCCGTGGCCGGCGAAATCTCCGGCGCAAGCTCGATGATCCTCGAACACGCGCCGTTCGGCCGGCGCGGCTTCTTTTCGAGCTTCACGCTGCAGGGCGTGCAGGCCGGCCAGGTGCTTGCGGCGGCCGTGTTCCTGCCGCTCGCGCACTACATGCCGGCCGAGCAGTTCAACAGCTGGGGCTGGCGCATTCCGTTCCTGCTGAGCGTCGTGGTGATCTTCGCGGGCTGGGCGATCCGCCGCAACGTGACGGAGACGCCCGCCTTCACGGGCGAGGAAGCACGGCAGACGCGCGCGCGCTCGCCCGTCGTCGAGGCATTCAGGTTCCACTGGGCCGATATGCTGCGTGTGGTCTGCATGTCGCTGATGAACGTGATTCCGGTCGTCGCGACGATCTTCGGCGCGGCCTATGCGGTGCAGCCAGCCTACGGCATCGGATTCGCGAAGGACGTCTACCTCTGGATTCCCGTCGCGGGCAACATCGTCGCGGTGCTGGTGATTCCGTACGTCGGCAGTTTGTCCGACCGGATCGGGCGCAAGCCGCCGATCGTGTTCGGCGCGCTGCTCTCGGGGCTGCTCGCATTCGCTTATCTCTATGCGATCAGCATCCAGAGCGTCCCGCTCGCTTTCGCGATGTCGCTGCTGATGTGGGGCGCGGTCTACCAGGGCTACAACGCGGTCTTCCCGAGCTTCTATCCCGAACTGTTTCCGACGCGCACGCGCGTCTCGGCGATGGCGATCGCGCAGAACGTCGGCACCGCGATCACCGCGATGCTGCCGGCGCTGTTTACGGCCGTCGCGCCGCCCGGCGCGACGCACATCTGGCTGACCGTCGGCGCGATCGCGTTCGGCATCACCGTGATCGCCGCGCTGGCCGCGCTCAGCGCCCGCGAAACCTATCGCATCGCGATGAGCGAGCTGGGCCGCCGCGATGCAGAGCCGGTCGACAAGACCGAGTACGATCGCCGCCGTGCACAGGCGCCAGCGGCGTGA > 252 BURMUCGD2M_2833 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_superfamily EEE11496.1 11 MAIASIRFFARAHAFPQRHDPRAIATADGHQKANVGFAWHHGPIMPAAAAFIVRSGRHGASVQVSGSARRTPRPFMRRRRSRALRDRDKDMSTASQAITQESKVRTVFRVVSGNFLEMYDFMVYGYYASAIAKTYFPSGNAFASLMLSLSVFGAGFLMRPVGAIVLGAYIDHHGRRKGLILTLTLMALGTLTVAAVPGYATIGVLAPVLVLLGRLLQGFSAGVELGGVSVYLSEIATKGHKGFYTSWQSGSQQVAVVFAAFVGVLLNRTLPAEEMTAWGWRIPFLIGCLIVPFLFLIRRSLKETDEFLAKRHRPSMGEIMRSMLDNWGIVIAGMGMVIMTTVSFYMITAYTPTFGKEVLHLSSLDALVVTVCIGVSNLVWLPLSGALSDRIGRRPVLIAFTVLTLLTAYPTVSWLVAEPSFLRLLAVELWLSFLYGSYNGAMVVALTEVMPADVRTAGFSLAYSLATTIGGFTPAISTLLIHETANKAAPGLWLSVAALCGLIATLVLYRTPESRNQYKAV beta_subgroup Burkholderia_multivorans_CGD2M Burkholderia_multivorans_CGD2M ACFD01000008 256528..258093 Holland,S.M.,_Harkins,D.M.,_Brinkac,L.M.,_Hostetler,J._and_Nierman,W.C. NA 0:1566 Genomic_DNA_was_provided_by_Dr._Steven_Holland,_NIAID_BethesdaAssembly_name:_JCVI-gbv2-v1.0Genome_coverage:_17.3xSequencing_technology:_454;_ABI. NA 22-JAN-2009 Burkholderia_multivorans_CGD2M_gcontig_1113133477724,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_multivorans_B9CG38_9BURK.gb Pseudomonas_RNA_homology_group_II 221178817 Submitted_(08-JAN-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA ACFD01000008 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1566 NA genomic_DNA NA CGD2M NA Burkholderia_multivorans_Vandamme_et_al._1997 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 513053 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Direct_Submission NA ACFD01000008.1 GTGGCCATCGCGTCGATCCGATTTTTTGCGCGGGCGCATGCTTTTCCGCAGCGGCACGACCCGCGCGCGATCGCGACGGCGGATGGTCACCAAAAGGCAAATGTCGGGTTCGCGTGGCATCATGGCCCGATCATGCCGGCCGCCGCCGCGTTCATCGTGCGCAGCGGCCGGCACGGCGCGAGCGTGCAGGTGTCGGGGTCGGCACGGCGCACGCCGCGTCCGTTCATGAGGCGCCGACGGTCGCGCGCCCTTCGAGATCGAGACAAGGACATGTCCACAGCATCGCAAGCCATCACGCAGGAATCGAAAGTCCGCACTGTGTTTCGCGTCGTCAGCGGCAACTTCCTCGAAATGTACGACTTCATGGTCTACGGCTATTACGCGTCGGCGATCGCGAAGACCTATTTCCCGAGCGGCAACGCGTTCGCGTCGCTGATGCTGTCGCTGTCGGTGTTTGGCGCGGGTTTCCTGATGCGCCCGGTCGGCGCGATCGTGCTCGGCGCGTACATCGACCATCACGGACGCCGCAAGGGGCTGATCCTGACGCTCACGCTGATGGCGCTCGGCACGTTGACCGTCGCCGCGGTGCCCGGCTATGCGACGATCGGCGTGCTCGCACCGGTGCTCGTGCTGCTCGGGCGCCTGCTGCAGGGTTTTTCGGCAGGGGTCGAGCTGGGCGGCGTGTCGGTGTATCTGTCCGAAATCGCGACCAAGGGGCACAAGGGCTTCTACACGTCGTGGCAGTCGGGCAGCCAGCAGGTCGCGGTCGTGTTCGCGGCGTTCGTCGGCGTGCTGCTGAACCGCACGCTGCCGGCCGAAGAGATGACCGCATGGGGCTGGCGCATCCCGTTCCTGATCGGCTGCCTGATCGTGCCGTTCCTGTTCCTGATTCGCCGCTCGCTGAAGGAGACGGACGAGTTCCTCGCGAAGCGCCATCGTCCGTCGATGGGCGAGATCATGCGCTCGATGCTCGACAACTGGGGGATCGTGATCGCGGGGATGGGCATGGTGATCATGACGACGGTGTCGTTCTACATGATCACCGCCTATACGCCGACGTTCGGCAAGGAAGTGCTGCACCTCTCGTCGCTCGACGCGCTCGTCGTGACGGTCTGCATCGGCGTGTCGAACCTCGTCTGGCTGCCGCTGTCCGGTGCCCTGTCGGACCGCATCGGCCGCCGCCCGGTGCTGATCGCGTTCACCGTGCTCACGCTGCTCACCGCGTATCCGACGGTGTCGTGGCTCGTCGCCGAGCCGTCGTTCCTGCGCTTGCTCGCCGTCGAGCTGTGGCTGTCGTTCCTCTACGGGTCGTACAACGGCGCGATGGTCGTCGCGCTGACCGAAGTGATGCCGGCCGACGTGCGCACGGCCGGCTTCTCGCTCGCGTACAGCCTCGCGACGACGATCGGCGGGTTCACGCCGGCGATCTCGACGCTGCTGATCCACGAAACGGCGAACAAGGCCGCGCCCGGGCTGTGGCTCAGCGTCGCCGCGCTGTGCGGATTGATCGCGACGCTCGTGCTGTACCGGACGCCGGAGTCGCGCAACCAGTACAAGGCCGTCTGA > 253 BURMUCGD2M_3148 identified_by_glimmer;_putative hypothetical_protein EEE10256.1 11 MHRRSPCRCTFCSRAAAYAVGRRAGRRPNDYRRAKKDRRAPIGSAAAGSRRAGAARGPAACVTAA beta_subgroup Burkholderia_multivorans_CGD2M Burkholderia_multivorans_CGD2M ACFD01000014 33875..35152 Holland,S.M.,_Harkins,D.M.,_Brinkac,L.M.,_Hostetler,J._and_Nierman,W.C. NA 1272:>1278 Genomic_DNA_was_provided_by_Dr._Steven_Holland,_NIAID_BethesdaAssembly_name:_JCVI-gbv2-v1.0Genome_coverage:_17.3xSequencing_technology:_454;_ABI. NA 22-JAN-2009 Burkholderia_multivorans_CGD2M_gcontig_1113133477768,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_multivorans_B9CJ11_9BURK.gb Pseudomonas_RNA_homology_group_II 221177808 Submitted_(08-JAN-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA ACFD01000014 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1278 NA genomic_DNA NA CGD2M NA Burkholderia_multivorans_Vandamme_et_al._1997 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 513053 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Direct_Submission NA ACFD01000014.1 TCACCGAAACCCGAACCGCCTGCGCAACACGACCAGCGCCGCGAGACTCAGCACTGCCGCGAACATCAGGTAGAAGCTCGGCGCGGTCTTCATCCCGGTCGCCTTGATCAGCCACGCGATGATGAACGGCCCGAAGCCGCCGAAGATCGTCACCGCGATGTTGTACGCGAGCGACATCCCGGTCGTGCGCGTCTGCACCGGAAACACCTCGGACAACAGGCCCGGCAGCGCCGCGAAATAGCCCGTCATCAGCACGGCAAGCAGCACCTGCAGCGCGATCAGCGTGCCGAAGCCCGGATGCGCGACCAGATACGCGAATGCCGGGTAGATCAGCACGAGGAAGCCGAGCGCCGGCGCGAGCATCACGCGCACGCGGCCGTAACGGTCCGACCAGTGGCCGACGAGCGGCGCGAACGCCATCTGGATCACGCCGACGACGAGAATCGCCGCAAATGCGGCCGACGGCGCGAGGCCGAGCTGCTTCACGCCGTAGGTCGGCATGAACAGCACGAGGTACGTCGCGACCGTGCCGAGCACCACCGCGCCGATCGCGGCGACGAGCCGCGCCTTGTGCGACGCGAACGTGTCGCGCAACGGGCTCGCGGTGCTTTCGGCCGCGAGGAACTCCGGCGTCTCGTCGACCTTCTTGCGGATGTAGTAAGCCACCGGCCCCAGCAGCAGCCCGAAGAAGAACGGCACGCGCCAGCCCCACGCGGCCATCTGCGCGGCCGTCAGCTGCGCGTTCAGCACGGTGCCGAAGCCGGCCGCGAGCAGCGTCGTCAGCCCCTGGCTCGCGACCTGCCAGCTCGCGAAGAAGCCGCGCCGCCCCGGCACGTGCTCGGCGAGGAACGCGGTCGCGCTGCCGAACTCGCCGCCGGCCGAAAAGCCCTGCATCAGCCGCGCCGCGACGAGGATCAGCGGCGCCGCGATGCCGATCGTCTCGTAGGTCGGCAGCACCGCGATGATCAGCGTGCCCGCCATCATCAGCAGGATCGACAGCGTGAGCGCAGCCTTGCGGCCCGCGCGGTCCGCATAGGCGCCGAGCACGATCGCGCCGAGCGGACGCATGAAGAACGACACACCGAACGTGCCGAGCGTGAGCAGCAGCGACACGGTGTCGTTGCCGGCCGGAAAGAACAGCCTGGAAATCGTCACCGCGAAAAAGCCGTAGACGACGAGGTCGAACCACTCGAGCGCGTTGCCGATCGACGCGGCGACCACCGCGCGCCACACGCGCGGCGACGAGGCAATGGAACGGGACGGCGTGACGGCATGCAT > 254 Bphy_6220 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bxe:Bxe_B0699_major_facilitator_superfamily_(MFS)metabolite/H+_symporter major_facilitator_transporter YP_001862311.1 11 MAIDQRVVRRVALASVIGATVEWYDFFLYGVVAGIVFNKLYFPATDPLVSTMLAYTTFAVGFVTRPLGGVLFGHFGDRVGRKSALILTLVIMGVSTAGVAFVPTYAQIGIWAPILLLTLRVLQGVGLGGEWGGAVLMAYEYAPPHKRGLYASLPQIGLSIGLCLASGMVAGVSRLLPETSFFAWGWRIAFGASLLLVLIGLYIRLKVMETPEFLALKRSRREAKIPFVDMMSRYRGSVLLGMGARYIDGVFFNVFAVFSIGYLTQHVSMSRTDALLGVMIAAIVMCFFIPLFGAMSDRVGRTRVYRWGSLICGLSVLPAFWLIESQPASTLMIWLAIVVPFGIFYAMVYGPEAALFAELFDAKVRYTGISFVYQFSGIFASGLTPIIATALLRINEGKPWMVCAYVMLSALVSAWSARVIERRAEAYGVTASAH beta_subgroup Burkholderia_phymatum_STM815 Burkholderia_phymatum_STM815 NC_010625 782930..784234 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Bruce,D.,_Goodwin,L.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Bacher,J.,_Blanchard,J.,_Cohan,F.,_James,E.,_Lawrence,J.,_Lizotte-Waniewski,M.,_Moulin,L.,_Rainey,P.,_Riley,M.,_Souza,V.,_Wertz,J._and_Young,P. NA 0:1305 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001045.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002725Source_DNA_and_bacteria_available_from_Michelle_Lizotte-Waniewski(mlizotte@bio.umass.edu)Contacts:_Michelle_Lizotte-Waniewski_(mlizotte@bio.umass.edu)_David_Bruce_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_phymatum_STM815_plasmid_pBPHY01,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_phymatum_B2JWD8_BURP8.gb Pseudomonas_RNA_homology_group_II 186470346 Unpublished NA NC_010625 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1305 NA genomic_DNA NA STM815 NA Burkholderia_phymatum_Vandamme_et_al._2003 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 391038 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_sequence_of_plasmid1_of_Burkholderia_phymatum_STM815 NA NC_010625.1 TCAGTGCGCGCTTGCCGTCACCCCATACGCCTCCGCGCGCCGCTCGATTACCCGCGCGGACCATGCCGACACGAGCGCGGACAGCATCACGTACGCGCAGACCATCCACGGCTTGCCTTCGTTGATGCGCAGCAGCGCAGTGGCGATAATCGGCGTCAACCCGCTCGCGAAGATCCCCGAGAACTGATAGACGAACGAAATGCCCGTATAGCGCACCTTTGCGTCGAAAAGTTCGGCAAAAAGCGCCGCTTCGGGGCCATACACCATCGCGTAGAAGATGCCGAACGGCACGACGATCGCGAGCCAGATCATCAGCGTGCTGGCCGGCTGGCTCTCGATCAACCAGAACGCGGGCAACACCGAGAGTCCGCAGATCAGCGATCCCCAGCGATACACGCGCGTCCGCCCCACCCGATCAGACATTGCGCCGAAAAGCGGAATGAAGAAGCACATCACGATGGCTGCGATCATCACGCCAAGCAGCGCATCGGTACGGCTCATCGACACATGCTGCGTCAGATAGCCGATCGAGAACACGGCGAACACATTAAAGAACACGCCGTCGATATAGCGCGCGCCCATGCCAAGCAGCACTGAACCACGATAGCGGCTCATCATGTCGACAAATGGAATCTTCGCTTCACGCCTGCTGCGTTTGAGCGCGAGAAACTCGGGCGTTTCCATCACCTTCAGCCGAATGTACAGGCCGATCAGCACGAGCAGCAGCGACGCGCCGAATGCGATCCGCCAGCCCCATGCGAAGAACGAGGTTTCGGGCAAGAGCCGCGAGACGCCCGCCACCATGCCCGACGCAAGACACAATCCGATGGACAGGCCGATCTGCGGCAAGCTCGCGTATAGCCCACGTTTGTGCGGCGGGGCGTATTCGTAGGCCATCAGCACCGCGCCGCCCCACTCGCCGCCGAGCCCGACGCCTTGCAGCACGCGCAGCGTCAACAGCAGAATCGGCGCCCAGATGCCGATCTGCGCGTAGGTCGGCACGAACGCGACGCCTGCCGTCGATACGCCCATGATCACCAGCGTGAGAATCAGCGCGGACTTGCGCCCGACGCGGTCGCCAAAGTGACCGAACAGCACGCCGCCGAGCGGTCGCGTAACGAAGCCGACTGCGAACGTCGTGTACGCGAGCATCGTCGATACGAGTGGATCGGTGGCGGGGAAATAGAGCTTGTTGAAGACGATGCCGGCGACGACGCCGTACAGAAAGAAGTCATACCATTCGACGGTCGCACCTATTACGCTCGCTAGTGCGACACGGCGGACCACGCGCTGATCGATTGCCAT > 255 Bphyt_0703 PFAM:_general_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bxe:Bxe_A3994_major_facilitator_superfamily_(MFS)_metabolite/H+_symporter major_facilitator_superfamily_protein YP_001894351.1 11 MNATTAASLAGSRQNSWRAVIAASIGNALEWFDLVVYGFFAVIIAKLFFPAGNDTVSLLLTLGTFGVSFFMRPLGAIVIGAYADRAGRKAALTLSILLMMGGTLIIAILPTYQSIGLAAPVILVLARLMQGFSAGGEFGSATAFLAEHVPGRRGFFASWQVASQGLTTLLAAGFGVLLTGKLSPEQMASWGWRVPFFFGLLIGPVAWYIRTKLDETPEFLAAETTETPLRDTFTSQKLRLLIAIGVVVLGTVSTYLVLFMPTFGVKQLGLAPSVAFSAIALTGLIQMVFSPLVGHLSDRHGRTTIMLSSALLLLVLIYPAFVYLVAHPTFGTLIAMQIVFGFLMTGYFAALPGLLSEMFPVQTRTTGMSLAYNIAVTIFGGFGPFIIAWLISVTGSKAAPSYYLIFAAIVSLVALTAARRKLGFR beta_subgroup Burkholderia_phytofirmans_PsJN Burkholderia_phytofirmans_PsJN NC_010681 774064..775341 Weilharter,A.,_Mitter,B.,_Shin,M.V.,_Chain,P.S.,_Nowak,J._and_Sessitsch,A. NA 0:1278 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001052.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002732Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_David_Bruce_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_phytofirmans_PsJN_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_phytofirmans_B2SX88_BURPP.gb Pseudomonas_RNA_homology_group_II 187922035 J._Bacteriol._193_(13),_3383-3384_(2011) NA NC_010681 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 21551308 1278 1 genomic_DNA NA PsJN NA Burkholderia_phytofirmans_Sessitsch_et_al._2005 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398527 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_Genome_Sequence_of_the_Plant_Growth-Promoting_Endophyte_Burkholderia_phytofirmans_Strain_PsJN NA NC_010681.1 TTAACGAAAGCCGAGCTTGCGACGCGCCGCCGTCAGCGCGACGAGGCTCACGATCGCGGCGAAAATCAGGTAGTAACTCGGCGCGGCCTTCGAGCCCGTCACGCTGATCAGCCACGCGATGATGAACGGCCCGAAGCCGCCGAAGATCGTCACGGCGATGTTATAGGCCAGCGACATGCCGGTGGTGCGCGTTTGCACCGGGAACATCTCCGAAAGCAAACCTGGCAGCGCCGCGAAATAGCCCGTCATCAGAAAGCCGAACACGATCTGCATGGCGATCAAGGTGCCGAAGGTCGGATGCGCGACCAGATACACGAAAGCCGGATAGATGAGGACGAGCAGCAGCAGCGCCGAGCTCAGCATGATCGTGGTGCGCCCATGCCGGTCCGACAGATGACCGACCAACGGCGAGAACACCATCTGGATCAGGCCGGTCAACGCGATCGCCGAAAACGCGACCGAGGGCGCCAGTCCCAACTGCTTCACGCCGAACGTCGGCATGAACAGCACCAGATACGTCGATACCGTGCCGAGCACCACCACGCCGATCGCAATCAGCAGGCGCAATTTCTGGCTGGTGAAGGTGTCGCGCAGCGGCGTTTCGGTGGTTTCGGCCGCGAGAAACTCGGGCGTTTCGTCGAGCTTCGTGCGGATGTACCACGCGACCGGTCCGATCAGCAAACCAAAGAAGAACGGCACGCGCCAACCCCAGGAAGCCATCTGCTCCGGCGAGAGCTTGCCGGTGAGCAGCACGCCGAAACCAGCGGCAAGCAGGGTGGTGAGCCCCTGGCTCGCCACCTGCCAGCTCGCGAAAAAGCCGCGCCGCCCAGGCACGTGTTCTGCGAGGAACGCCGTGGCGCTGCCGAACTCGCCGCCCGCCGAGAAACCCTGCATCAGACGCGCCAGCACGAGGATCACCGGCGCCGCGAGGCCGATGCTTTGATAGGTCGGCAGGATCGCGATGATCAATGTGCCGCCCATCATCAGCAGGATCGAGAGCGTGAGCGCCGCCTTGCGGCCGGCGCGGTCGGCGTAAGCGCCGATCACGATCGCGCCGAGCGGGCGCATGAAGAACGACACGCCGAACGTGCCGAGCGTGAGGAGCAGCGAGACCGTGTCGTTACCGGCCGGGAAAAACAGCTTCGCGATGATCACCGCGAAAAAACCGTACACCACCAGATCGAACCATTCCAGCGCGTTGCCGATCGAGGCCGCGATCACCGCGCGCCACGAATTCTGCCGGCTCCCCGCCAGGCTTGCTGCCGTCGTTGCGTTCAT > 256 Bphyt_4723 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_msm:MSMEG_2911_integral_membrane_transport_protein major_facilitator_superfamily_protein YP_001888459.1 11 MNPARPQATAPASTAMLRRVAFASTIGTAAEYYDFFVYGTAAVLVFGQKFFPSADPLIGTLAAFATYAVGFLARPLGGIVFGHFGDRVGRKKALIVTILIVGLGTFAIGLLPDYQSIGIWAPIALIVIRVLQGFGVGGEQAGAVLLTAEYAPPARRGFFASLVQLGAPAGFLIPSGLFALLGATLTQAQLLDWGWRIPFLASALLVAVGLYIRLRTEESPIFATIQRTKAVASRPVVEVVRQFGPTIVKGVGAKLIEACAFAMYTMIVLAYGKAHGIAQGMLLETVIVAVALELVTIPLAGALSDRIGRRTTFIAGALLHVALVVPFFMAIDSGNRAAIQLVMILAISVGHSLCYAPQAALFPELFPARVRCSGIALIWQIGSLLGSGVLGLLAVKLIQLTHGNSLALIVYVAVLGIVSAVSLFALPETAPLRRGGDLHDWGGGEPVEARTAARASSSSSSLAQP beta_subgroup Burkholderia_phytofirmans_PsJN Burkholderia_phytofirmans_PsJN NC_010676 825258..826655 Weilharter,A.,_Mitter,B.,_Shin,M.V.,_Chain,P.S.,_Nowak,J._and_Sessitsch,A. NA 0:1398 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001053.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002732Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_David_Bruce_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 03-AUG-2011 Burkholderia_phytofirmans_PsJN_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_phytofirmans_B2TDP9_BURPP.gb Pseudomonas_RNA_homology_group_II 187918714 J._Bacteriol._193_(13),_3383-3384_(2011) NA NC_010676 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 21551308 1398 2 genomic_DNA NA PsJN NA Burkholderia_phytofirmans_Sessitsch_et_al._2005 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398527 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_Genome_Sequence_of_the_Plant_Growth-Promoting_Endophyte_Burkholderia_phytofirmans_Strain_PsJN NA NC_010676.1 GTGAACCCAGCACGTCCGCAAGCCACCGCGCCGGCCAGTACCGCCATGCTGCGCCGGGTGGCGTTCGCCTCGACCATCGGCACCGCGGCCGAGTACTACGATTTCTTCGTCTATGGCACGGCTGCCGTGCTGGTGTTCGGCCAGAAATTCTTCCCTTCCGCTGACCCGCTGATCGGCACGCTCGCCGCCTTCGCCACCTACGCGGTCGGTTTTCTGGCGCGGCCGCTGGGCGGCATCGTGTTCGGTCATTTCGGCGATCGCGTCGGCCGCAAGAAGGCCCTGATCGTGACGATCCTGATCGTCGGGTTGGGCACGTTCGCTATCGGCCTGCTGCCGGACTATCAGTCGATCGGCATCTGGGCGCCGATCGCGCTGATCGTGATTCGCGTCTTGCAAGGGTTCGGCGTGGGCGGCGAGCAGGCGGGCGCTGTCCTGCTCACGGCGGAATACGCACCGCCTGCGCGGCGCGGCTTCTTCGCGAGCCTCGTGCAACTCGGCGCACCGGCGGGCTTCCTGATTCCGTCGGGGCTGTTCGCGCTGCTCGGTGCGACGTTGACGCAGGCGCAGTTGCTCGACTGGGGCTGGCGCATTCCGTTTCTCGCGAGCGCGCTGCTGGTCGCCGTGGGTCTGTATATCCGCTTGCGCACCGAGGAGTCGCCGATCTTCGCGACGATCCAGCGCACCAAGGCAGTGGCTTCGCGCCCGGTGGTGGAAGTGGTGCGGCAGTTCGGCCCGACCATCGTCAAAGGTGTCGGCGCCAAATTGATCGAGGCCTGCGCCTTTGCAATGTACACGATGATCGTGCTCGCCTACGGCAAAGCACACGGCATCGCGCAAGGCATGTTGCTCGAAACGGTGATCGTCGCGGTCGCGCTCGAACTCGTGACGATTCCGCTTGCCGGTGCCCTATCCGATCGCATTGGACGGCGAACGACCTTCATCGCGGGCGCGTTATTGCACGTGGCGCTCGTCGTGCCGTTTTTCATGGCGATCGATAGCGGCAATCGCGCGGCGATCCAGCTTGTGATGATTCTCGCCATCAGCGTCGGTCACAGTCTCTGCTATGCACCGCAAGCGGCACTGTTCCCCGAACTCTTTCCGGCGCGTGTGCGGTGCAGCGGTATCGCGCTGATCTGGCAGATCGGCTCGTTGCTCGGCAGCGGTGTACTCGGACTGCTCGCCGTCAAACTGATTCAACTCACGCATGGCAATTCGCTCGCGTTGATCGTCTACGTGGCGGTGCTTGGCATCGTGTCGGCGGTCTCGCTCTTTGCCTTGCCGGAAACCGCGCCTCTGCGCCGCGGCGGCGATCTCCATGATTGGGGCGGCGGTGAGCCGGTCGAGGCGCGTACGGCAGCACGAGCGTCCTCGTCTTCATCTTCTCTCGCGCAGCCCTGA > 257 Bphyt_4378 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bxe:Bxe_B0699_major_facilitator_superfamily_(MFS)metabolite/H+_symporter major_facilitator_superfamily_protein YP_001888125.1 11 MAIDPRAIRRVAFASVIGATVEWYDFFLYGVVAGIVFNKLYFPASDPLVSTLLAYSTFAVGFVTRPLGGVIFGHFGDRIGRKSALILTLIIMGISTAGVAFVPTYAQIGIWAPILLLSLRVLQGIGLGGEWGGAVLMAYEYAPPEKRGLYASLPQIGLSIGLCLASGMVAALSRLLPETAFLSWGWRIAFGASLGLVLIGLYIRAKVMETPEFIALKRNRREAKIPFVDMITRYRGAVVLGMGARYIDGVFFNIFAVFSIGYLTQHVSMSRTDALLGVMIAAGVMCFFIPLFGSMSDKLGRARVYFWGSLICGVSVFPAFWLIEMQPANTLLIWAAIVVPFGIFYAMVYGPEAALFAELFDAEVRYTGISFVYQFSGIFASGLTPIIATILMRLNGGKPWTVCAYVLFSALVSALSVRAIERRRAGAFESVVHARS beta_subgroup Burkholderia_phytofirmans_PsJN Burkholderia_phytofirmans_PsJN NC_010676 436696..438006 Weilharter,A.,_Mitter,B.,_Shin,M.V.,_Chain,P.S.,_Nowak,J._and_Sessitsch,A. NA 0:1311 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001053.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002732Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_David_Bruce_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 03-AUG-2011 Burkholderia_phytofirmans_PsJN_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_phytofirmans_B2TF84_BURPP.gb Pseudomonas_RNA_homology_group_II 187918714 J._Bacteriol._193_(13),_3383-3384_(2011) NA NC_010676 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 21551308 1311 2 genomic_DNA NA PsJN NA Burkholderia_phytofirmans_Sessitsch_et_al._2005 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398527 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_Genome_Sequence_of_the_Plant_Growth-Promoting_Endophyte_Burkholderia_phytofirmans_Strain_PsJN NA NC_010676.1 ATGGCAATCGATCCCCGCGCTATCCGGCGCGTTGCGTTCGCCAGTGTGATCGGCGCAACCGTCGAATGGTATGACTTTTTTCTTTACGGCGTGGTCGCCGGCATCGTATTCAACAAGCTCTATTTTCCGGCCAGCGATCCGCTCGTATCGACGCTGCTCGCCTATTCGACCTTCGCAGTCGGCTTCGTGACGCGGCCTTTGGGCGGCGTGATATTCGGTCACTTCGGCGATCGGATCGGGCGTAAATCGGCGTTGATTCTGACGCTCATCATCATGGGGATCTCGACGGCGGGCGTCGCGTTCGTTCCCACTTATGCGCAGATCGGCATCTGGGCACCGATTCTGTTGTTGTCGCTGCGCGTGTTGCAGGGCATCGGGCTCGGCGGCGAATGGGGCGGCGCGGTGCTGATGGCGTATGAATACGCGCCACCTGAAAAGCGCGGCCTGTACGCGAGCCTGCCGCAGATCGGTTTGTCGATCGGACTCTGTCTCGCATCGGGGATGGTCGCCGCGCTCTCCCGCCTGCTGCCCGAAACGGCGTTCCTGTCGTGGGGGTGGCGGATCGCGTTCGGCGCGTCGCTCGGTCTGGTTTTGATTGGCCTGTACATTCGCGCCAAGGTGATGGAGACGCCCGAATTCATCGCACTCAAACGCAATCGGCGCGAAGCGAAGATTCCGTTCGTCGACATGATCACGCGTTATCGCGGCGCCGTGGTGCTCGGCATGGGCGCGCGTTATATCGACGGCGTGTTCTTCAACATCTTCGCCGTGTTCTCGATCGGCTACCTCACGCAGCACGTGTCGATGAGCCGCACCGATGCCTTGCTCGGCGTGATGATCGCGGCCGGCGTAATGTGCTTTTTTATCCCGCTGTTCGGCAGCATGTCGGATAAGCTCGGCCGCGCGCGGGTGTATTTCTGGGGCTCGCTGATTTGTGGCGTGTCGGTGTTTCCGGCTTTCTGGCTCATCGAAATGCAACCGGCCAACACGCTGTTGATTTGGGCGGCCATCGTGGTGCCGTTCGGCATTTTCTACGCGATGGTGTACGGGCCGGAGGCGGCATTGTTTGCCGAACTGTTCGATGCCGAAGTGCGTTATACGGGCATCTCGTTCGTGTATCAGTTCTCGGGAATCTTCGCGAGCGGGCTCACGCCGATCATCGCGACGATCCTGATGCGGTTGAATGGCGGTAAGCCATGGACTGTGTGCGCGTATGTGTTGTTTTCGGCTTTGGTATCGGCGTTGTCGGTGCGCGCGATAGAGCGGAGGCGGGCGGGCGCGTTCGAATCGGTGGTGCATGCGCGGTCGTGA > 258 Bphyt_5624 TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bmu:Bmul_6132_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS) major_facilitator_superfamily_metabolite/H+_symporter YP_001889341.1 11 MNPTEPIAATSSVSRSTRAAAVLRVTSGNFLEQFDFFLFGFYATFISKIFFPSTSEFASLMLTFAVFGAGFLMRPLGAIFLGAYIDKVGRRMGLIVTLSIMASGTVLIACVPGYASIGLLAPALVLLGRLLQGFSAGAELGGVSVYLAEMATPGNRGFYTSWQSASQQVAIVMAAAIGYGLNEWLSAQQIGAWGWRVPFLIGCAIVPFLFMLRRSLQETAAFEARQHHPQAREIFSMLLANWRIVIGGMLLTAMTTTTFYLITVYTPTFGRSVLKLSTADSLMVTLLVAVSNFVWLPIGGAVSDRIGRKPLLLAVSVLAIFTAYPALSWLADAPSFARMLIVLLWFSFFFGMYNGAMVAALTEVMPAEVRVAGFSLAFSLATAVFGGFTPAVSTYLIQVTHDKAAPGYWLSFAALCGLCATLGLYRRRASSSASAASSA beta_subgroup Burkholderia_phytofirmans_PsJN Burkholderia_phytofirmans_PsJN NC_010676 1826779..1828098 Weilharter,A.,_Mitter,B.,_Shin,M.V.,_Chain,P.S.,_Nowak,J._and_Sessitsch,A. NA 0:1320 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001053.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002732Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_David_Bruce_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 03-AUG-2011 Burkholderia_phytofirmans_PsJN_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_phytofirmans_B2TG95_BURPP.gb Pseudomonas_RNA_homology_group_II 187918714 J._Bacteriol._193_(13),_3383-3384_(2011) NA NC_010676 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 21551308 1320 2 genomic_DNA NA PsJN NA Burkholderia_phytofirmans_Sessitsch_et_al._2005 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398527 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_Genome_Sequence_of_the_Plant_Growth-Promoting_Endophyte_Burkholderia_phytofirmans_Strain_PsJN NA NC_010676.1 TCAGGCGGACGACGCCGCCGACGCGCTGCTGCTCGCGCGGCGGCGGTATAGCCCGAGCGTCGCGCACAAGCCGCAGAGCGCAGCGAAGCTCAGCCAGTAACCGGGCGCGGCCTTGTCATGCGTTACCTGAATAAGATACGTGGACACTGCCGGCGTAAATCCGCCGAAGACTGCCGTCGCCAGACTGAATGCCAGCGAGAAACCCGCGACCCGCACTTCGGCCGGCATCACTTCGGTCAGCGCGGCGACCATTGCGCCGTTGTACATGCCGAAGAAGAACGAGAACCATAGCAGCACGATCAACATGCGTGCGAAGCTCGGTGCATCGGCGAGCCACGACAGCGCCGGATACGCGGTGAAGATCGCCAGCACCGAAACGGCGAGCAACAGCGGCTTGCGGCCAATGCGGTCGGACACCGCGCCGCCAATGGGCAGCCAGACGAAGTTCGATACGGCCACGAGCAGCGTCACCATGAGGCTATCCGCCGTGGACAGCTTCAGCACTGACCTGCCGAAGGTCGGCGTATAGACGGTAATGAGATAGAACGTCGTAGTGGTCATCGCCGTCAGCAACATGCCACCGATGACGATGCGCCAGTTGGCAAGCAGCATCGAAAAGATTTCACGCGCCTGCGGATGATGCTGCCGCGCCTCGAACGCGGCCGTTTCTTGCAGCGAACGGCGCAGCATGAACAGGAACGGCACGATCGCGCAGCCAATGAGGAACGGCACGCGCCAGCCCCACGCCCCGATCTGCTGCGCGGAAAGCCACTCGTTCAGGCCATAGCCAATGGCCGCTGCCATGACGATGGCAACCTGCTGGCTCGCCGACTGCCAGCTCGTGTAAAAGCCCCTGTTGCCGGGCGTCGCCATCTCCGCGAGATAGACCGACACGCCGCCCAGTTCCGCGCCCGCCGAGAAGCCCTGCAGCAGCCGGCCGAGCAATACGAGCGCAGGCGCAAGCAGGCCGATGCTCGCATAGCCCGGCACGCACGCGATCAGAACGGTGCCGCTCGCCATGATCGACAGCGTGACGATCAGCCCCATGCGCCGCCCCACTTTGTCGATATACGCGCCGAGAAAGATCGCGCCGAGAGGACGCATGAGAAAGCCCGCGCCGAACACGGCGAAGGTGAGCATCAACGAGGCGAATTCGCTGGTCGAAGGAAAGAAGATTTTCGAAATAAAGGTTGCGTAAAAGCCGAACAGAAAGAAATCGAACTGTTCGAGGAAGTTGCCGCTGGTCACGCGCAGCACGGCGGCCGCGCGCGTCGAGCGCGAAACGCTTGACGTCGCGGCGATCGGTTCTGTGGGGTTCAT > 259 Bphyt_5520 TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bmu:Bmul_4980_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS) major_facilitator_superfamily_metabolite/H+_symporter YP_001889245.1 11 MHPSPSTLTPARSKAAAVFRVTAGNFLEQFDFFLFGFYATQIANVFFPAASEFASLMMTFAVFGAGFLMRPLGAIVLGAYIDDVGRRKGLIVTLSIMATGTILIAFVPGYATIGLAAPALVLIGRLLQGFSAGAELGGVSVYLAEMATPGRKGLFTSWQSASQQVAIVVAAALGFALNQSLDAATIAAWGWRVPFFVGCMIVPFIFMLRRNLQETEEFKARQHRPNMKEVLRTLVENWTVVIAGMMLVAMTTASFYLITVYAPTFGKTVLHLSTADSLLVTLCVAVSNFVWLPIGGALSDRIGRRPLLVAMTLLAILTAYPALSFLAHAPSFVNMLLALLWLSFMYGIYNGAMVVALTEVMPAQVRVAGFSLAYSLATAVFGGFTPAISTALIHMTGDKAAPGYWMSFAAACALLATFALYRRRAATLTPAH beta_subgroup Burkholderia_phytofirmans_PsJN Burkholderia_phytofirmans_PsJN NC_010676 1724939..1726237 Weilharter,A.,_Mitter,B.,_Shin,M.V.,_Chain,P.S.,_Nowak,J._and_Sessitsch,A. NA 0:1299 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001053.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002732Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_David_Bruce_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 03-AUG-2011 Burkholderia_phytofirmans_PsJN_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_phytofirmans_B2TGM9_BURPP.gb Pseudomonas_RNA_homology_group_II 187918714 J._Bacteriol._193_(13),_3383-3384_(2011) NA NC_010676 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 21551308 1299 2 genomic_DNA NA PsJN NA Burkholderia_phytofirmans_Sessitsch_et_al._2005 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 398527 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_Genome_Sequence_of_the_Plant_Growth-Promoting_Endophyte_Burkholderia_phytofirmans_Strain_PsJN NA NC_010676.1 ATGCACCCCTCGCCCTCTACCCTTACGCCGGCACGTTCAAAGGCTGCGGCGGTTTTCCGCGTAACGGCCGGAAACTTTCTGGAGCAGTTCGACTTTTTTCTGTTCGGCTTCTATGCGACCCAGATCGCCAACGTCTTCTTTCCGGCCGCGAGCGAATTTGCCTCGCTGATGATGACCTTCGCGGTCTTCGGCGCCGGTTTTCTGATGCGCCCGCTGGGCGCAATCGTACTCGGCGCTTACATCGACGACGTGGGCCGCCGCAAGGGTCTGATCGTGACGCTCTCGATCATGGCGACCGGCACCATCCTGATCGCGTTCGTACCGGGCTACGCGACCATTGGCCTTGCGGCGCCCGCGCTGGTGCTGATCGGGCGGCTCTTGCAGGGCTTTTCCGCGGGTGCGGAGCTGGGCGGCGTCTCGGTGTACCTGGCCGAGATGGCCACGCCCGGCCGCAAAGGCCTCTTCACGAGCTGGCAGTCCGCGAGCCAGCAGGTGGCGATCGTCGTGGCCGCGGCCCTCGGCTTCGCGCTCAACCAGTCGCTGGACGCCGCCACCATCGCGGCGTGGGGATGGCGCGTACCGTTCTTCGTCGGCTGCATGATCGTGCCGTTCATCTTCATGCTGCGTCGCAATCTGCAGGAAACCGAGGAATTCAAGGCCCGTCAGCATCGCCCGAACATGAAGGAGGTCTTGCGCACGCTGGTCGAGAACTGGACCGTCGTGATTGCAGGCATGATGCTGGTGGCGATGACCACCGCGAGCTTCTATCTCATCACGGTCTACGCACCGACTTTCGGCAAGACGGTCCTGCACCTGAGCACCGCCGACAGTTTGCTCGTGACCCTATGTGTCGCCGTATCGAACTTCGTGTGGCTGCCGATCGGCGGAGCCCTCTCCGACAGGATCGGTCGCCGGCCGCTGCTCGTCGCCATGACGCTGCTCGCCATCCTGACCGCATACCCGGCATTGTCGTTTCTCGCTCACGCGCCGAGCTTCGTCAACATGCTGCTCGCACTCCTTTGGCTCTCGTTCATGTACGGCATCTATAACGGCGCGATGGTCGTCGCGCTGACGGAAGTGATGCCGGCGCAGGTACGCGTCGCGGGCTTCTCGCTCGCCTATAGCCTCGCGACGGCAGTATTCGGCGGTTTCACGCCGGCGATCTCCACAGCACTCATTCACATGACCGGCGACAAGGCTGCACCCGGCTACTGGATGAGCTTCGCCGCGGCGTGCGCCCTTCTTGCGACATTCGCCCTGTATCGCCGCCGTGCAGCGACGCTAACTCCCGCGCACTAA > 260 BURPS668_2961 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_superfamily_permease YP_001059975.1 11 MSDTRLSASAAAPRAANTTNHRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPIGSFLFGHFGDRIGRKSTLVASLLVMGVSTTAIGFVPGYDAIGALAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRGWFGMFPQLGPSIGFLASNGLFFALALTLSDEQFRSWGWRIPFLVSAALVAVGLYVRLKIAETPAFQAALDRHERVRVPLAALVAHHWRPTLLGALAMVVCYTLFYISTVFSLSYGVSTLHFSRQSFLGLLCFAVLFMALATPLAAAAADRFGRKPVLIAGAIAALLSGFTMAPLLGSGSMPLVALFLTIELFLMGVTFAPMGALLPELFPTNVRYTGAGVAYNLGGILGASIAPYIAQLLAARGGLAWVGAYVSAAAAISLVGVLLMRETRDAKLT beta_subgroup Burkholderia_pseudomallei_668 Burkholderia_pseudomallei_668 NC_009074 2911185..2912498 NA NA 0:1314 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000570.Source_DNA_is_available_from_BEIresources(http://www.beiresources.org/).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_pseudomallei_668_chromosome_chromosome_I,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_A3NCA4_BURP6.gb Pseudomonas_RNA_homology_group_II 126438353 Submitted_(01-MAR-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_009074 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1314 I genomic_DNA NA 668 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320373 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_009074.1 ATGTCGGACACCCGTCTTTCCGCTTCCGCCGCCGCGCCGCGCGCCGCGAACACGACGAACCACCGTCGCATCGTGTTCGCGAGCTTCATCGGCACGGCGATCGAGTTCTACGATTTCTACGTGTACGCGACAGCCGCCGCGCTCGTGATCGGCCCCGTGTTCTTCCCGCACGGCTCGGCCACCGCGCAGGCGCTGTCCGCGTTCGTCACGTTCGGCATCGCGTTCATCGCGCGGCCGATCGGCTCGTTCCTGTTCGGCCACTTCGGCGACCGGATCGGCCGCAAGTCGACGCTCGTCGCGTCACTGCTCGTGATGGGCGTGTCGACGACCGCGATCGGCTTCGTGCCCGGCTACGACGCGATCGGCGCGCTCGCGCCCGTGCTGCTCTGCGTGCTGCGGTTCGGCCAGGGCATCGGCCTCGGCGGCGAATGGGGCGGCGCCGCGCTCCTCGCCACCGAGCACGCGCCCGCCGGCAAGCGCGGCTGGTTCGGGATGTTTCCGCAGCTCGGCCCGTCGATCGGCTTTCTCGCGTCGAACGGCCTGTTCTTCGCGCTTGCGCTCACGCTGTCCGACGAGCAGTTTCGTTCGTGGGGCTGGCGCATCCCGTTTCTCGTGAGCGCCGCGCTCGTCGCGGTCGGCCTCTACGTACGCCTGAAGATCGCCGAAACGCCCGCGTTCCAGGCCGCGCTCGACCGGCACGAGCGCGTGCGCGTGCCGCTCGCGGCGCTCGTTGCGCACCACTGGCGGCCGACGCTGCTCGGCGCGCTCGCGATGGTCGTCTGCTATACGCTGTTCTATATCTCGACGGTGTTCTCGCTGTCGTACGGCGTCTCGACGCTGCATTTCTCGCGCCAGAGCTTCCTCGGCCTGCTGTGTTTCGCGGTGCTGTTCATGGCGCTCGCGACGCCGCTCGCCGCCGCGGCCGCCGATCGCTTCGGTCGCAAGCCGGTGCTGATCGCGGGCGCGATCGCCGCGCTGCTGTCCGGCTTCACGATGGCGCCGCTGCTCGGCAGCGGCTCGATGCCGCTCGTCGCGCTGTTCCTGACGATCGAGCTGTTCCTGATGGGCGTGACGTTCGCGCCGATGGGCGCGCTGCTGCCGGAACTGTTCCCGACCAACGTGCGCTACACGGGCGCGGGGGTCGCGTACAACCTGGGCGGCATCCTGGGCGCGTCGATCGCGCCTTACATCGCGCAGTTGCTTGCCGCGCGCGGCGGACTTGCGTGGGTCGGCGCATACGTGTCGGCCGCGGCGGCGATCAGCCTCGTCGGCGTGCTGCTGATGCGCGAAACGCGCGATGCGAAGCTGACATAA > 261 BURPS668_A0100 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 MFS_transporter,_metabolite:H+_symporter_(MHS)_family_protein YP_001061106.1 11 MEPTFTETGARASEPHATTLAGRAASSGDKLQRLKSIFSASAGNLIEWYDWYVYSAFALYFAHSFFPAGNQTAQLLNTAAVFAVGFLARPVGGWLMGIYADRYGRRPALLVSVVLMCVGSLIIALCPGYDVIGTAAPVLLVVARLLQGLSVGGEYGTSATYLSEVATARDRGFYSSFQYVTLVAGQLVALALLIVLQQFVLTTQQLESWGWRIPFFIGAACALAAMRLRSSMEETGEFKRTLNARDKRGTLAELSKHPRAVLTVVGLTMGGTIAFYTYSIYMQKFLVNTVGMSKHDATLVSAASLALFAILQPIVGSISDRIGRRPVLIAFGVLGTLFTVPIMTAISRTHDVWTAFFLNMAALVIVSGYTSINAVVKAELFPAKIRALGVGFPYALTVSIFGGTAEYLALWLKQAGHESLFYWYVTAAIFCSLLVYVCMRDTGKHSLIKD beta_subgroup Burkholderia_pseudomallei_668 Burkholderia_pseudomallei_668 NC_009075 85459..86811 NA NA 0:1353 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000571.Source_DNA_is_available_from_BEIresources(http://www.beiresources.org/).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_pseudomallei_668_chromosome_chromosome_II,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_A3NFI5_BURP6.gb Pseudomonas_RNA_homology_group_II 126442307 Submitted_(01-MAR-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_009075 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1353 II genomic_DNA NA 668 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320373 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_009075.1 ATGGAGCCGACCTTTACCGAAACCGGCGCGCGGGCGAGCGAGCCCCACGCAACAACGCTTGCCGGCCGAGCCGCATCGTCCGGCGATAAGCTGCAACGCCTGAAGTCGATCTTCTCCGCATCGGCGGGCAATCTGATCGAGTGGTACGACTGGTACGTGTATTCGGCCTTTGCGCTGTACTTCGCGCATTCGTTTTTTCCGGCCGGCAACCAGACCGCGCAACTGCTCAACACGGCCGCCGTCTTCGCGGTGGGCTTTCTGGCGCGCCCCGTCGGCGGCTGGCTGATGGGGATCTACGCGGATCGCTACGGCCGCCGTCCGGCCTTGCTCGTATCGGTCGTGCTGATGTGCGTGGGCTCGCTCATCATCGCCCTCTGCCCGGGGTATGACGTGATCGGCACGGCCGCGCCTGTCCTGCTCGTCGTCGCCCGCCTGCTGCAGGGCTTGAGCGTCGGGGGCGAATACGGCACGTCGGCGACCTATCTCAGCGAAGTCGCGACCGCCCGCGATCGCGGCTTCTACTCCAGCTTTCAGTACGTCACGCTGGTTGCCGGCCAACTCGTCGCGCTGGCGCTGCTGATCGTCCTGCAGCAATTCGTGCTGACGACACAGCAGCTCGAAAGCTGGGGGTGGAGAATTCCGTTCTTCATCGGCGCGGCGTGCGCGCTGGCCGCCATGCGCCTGCGCTCGTCGATGGAGGAAACGGGCGAATTCAAGCGGACCTTAAACGCCCGGGACAAGCGCGGCACGCTCGCGGAACTGAGCAAGCATCCGCGCGCGGTCCTGACCGTGGTCGGCCTGACGATGGGCGGCACGATCGCGTTCTACACCTACTCGATCTACATGCAGAAATTCCTCGTGAACACCGTCGGCATGAGCAAACATGATGCGACCCTGGTATCCGCCGCGTCGCTCGCCCTGTTCGCGATCTTGCAGCCGATCGTCGGCTCGATCTCCGATCGCATCGGCCGTCGCCCCGTGCTGATCGCGTTCGGCGTGCTCGGCACGTTGTTCACCGTGCCGATCATGACGGCCATCAGCCGGACTCATGACGTTTGGACCGCGTTCTTCCTCAACATGGCGGCGCTGGTGATCGTGTCGGGGTATACCTCGATCAACGCAGTCGTGAAGGCGGAATTGTTCCCTGCGAAAATCCGTGCACTGGGCGTCGGCTTTCCGTATGCACTCACCGTGTCGATCTTCGGCGGCACGGCGGAGTATCTGGCGCTCTGGCTCAAGCAGGCTGGCCACGAATCGCTGTTCTATTGGTACGTGACAGCCGCCATATTCTGTTCGTTGCTCGTCTACGTATGCATGCGGGATACCGGGAAGCACTCGCTGATCAAGGATTGA > 262 BURPS668_A2070 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_transporter YP_001063065.1 11 MASTQSAPRATAPATTIDAGVISARLDRLPPTRSVWKLVALLSLGFFFELYDLLYSGYVAPGLVKGGILSATTRGLFGTTGVASFIAALFAGLFIGTIACGFLADRFGRRAVFTWSLLWYTAANLVMAFQDTAGGLNFWRFVVGLGLGVEMVTIGTYISELVPKQIRGRAFACEQAVGFVAVPVVALLAYLLVPHAPFGLDGWRWVVLIGAHGAIFVWWIRRQLPESPRWLAQQGRLDEAERVLAALEAKVEAEYGRPLPPPAPAEPIAPRGRFADMWVPPYRRRTVMMTIFNVFQTVGFYGFANWVPTLLIKQGITVTTSLMYSSVIALAAPIGPLIGLAIADRFERKTVIVAMAGAAMIAGLLFSHASAAWLLVALGVCLTLANNIMSYSFHAYQAELFPTAIRARAVGFVYSWSRFSAIFTSFAIAAVLKGFGTPGVFVFIAGAMAIVMASIGLMGPRTKGVALEAISR beta_subgroup Burkholderia_pseudomallei_668 Burkholderia_pseudomallei_668 NC_009075 2008056..2009474 NA NA 0:1419 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000571.Source_DNA_is_available_from_BEIresources(http://www.beiresources.org/).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_pseudomallei_668_chromosome_chromosome_II,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_A3NL44_BURP6.gb Pseudomonas_RNA_homology_group_II 126442307 Submitted_(01-MAR-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_009075 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1419 II genomic_DNA NA 668 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320373 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_009075.1 TCAACGCGATATCGCTTCGAGCGCGACGCCTTTCGTGCGCGGCCCCATCAGCCCGATCGACGCCATCACGATCGCCATCGCGCCCGCGATGAACACGAACACGCCGGGCGTGCCGAATCCCTTCAGCACGGCCGCGATCGCGAACGACGTGAAGATCGCCGAAAAGCGGCTCCACGAATAGACGAAGCCGACCGCGCGCGCGCGGATCGCGGTCGGAAACAGCTCGGCCTGATAGGCATGGAAGCTGTACGACATGATGTTGTTCGCGAGCGTGAGGCATACGCCGAGCGCGACGAGCAGCCACGCGGCCGACGCGTGGCTGAACAGCAGCCCCGCGATCATCGCCGCGCCCGCCATCGCGACGATCACCGTCTTGCGCTCGAAGCGGTCGGCGATCGCAAGGCCGATCAACGGCCCGATCGGCGCGGCGAGCGCGATCACGCTCGAATACATGAGGCTCGTCGTGACGGTGATCCCCTGCTTGATCAGCAGCGTCGGCACCCAGTTCGCGAAGCCGTAGAAGCCCACCGTCTGAAACACGTTGAAGATCGTCATCATCACCGTGCGCCTGCGGTACGGCGGCACCCACATGTCGGCGAACCGGCCGCGCGGCGCGATGGGCTCGGCGGGCGCGGGCGGCGGCAGCGGCCGGCCGTACTCGGCCTCGACCTTCGCCTCGAGCGCGGCGAGCACGCGCTCGGCTTCGTCAAGCCGGCCCTGCTGCGCGAGCCAGCGCGGGCTTTCCGGCAACTGGCGGCGAATCCACCAGACGAAGATCGCGCCGTGCGCGCCGATCAGCACGACCCAGCGCCAGCCGTCGAGGCCGAACGGCGCATGCGGCACCAGCAGATACGCGAGCAGCGCCACCACGGGCACCGCGACGAAGCCGACCGCCTGCTCGCACGCGAACGCGCGGCCGCGAATCTGTTTCGGGACCAACTCCGAGATATATGTGCCGATCGTCACCATTTCGACGCCGAGCCCCAGCCCGACGACGAAGCGCCAGAAATTGAGGCCCCCGGCGGTATCCTGGAACGCCATCACGAGGTTCGCGGCCGTGTACCACAGCAGCGACCACGTAAACACCGCGCGGCGGCCGAAGCGGTCGGCGAGAAAGCCGCACGCGATCGTGCCGATGAAGAGCCCCGCGAACAGCGCGGCGATGAAGCTCGCGACGCCCGTCGTGCCGAACAGCCCGCGCGTCGTCGCGCTCAGGATGCCGCCCTTCACGAGGCCGGGCGCGACGTAGCCGCTGTACAGCAGATCGTAGAGCTCGAAGAAGAAGCCGAGACTCAGCAGCGCGACGAGTTTCCAGACGCTGCGCGTGGGCGGCAGGCGATCGAGGCGCGCCGAGATGACGCCGGCGTCGATCGTCGTTGCCGGCGCCGTTGCGCGCGGCGCGCTTTGCGTTGAAGCCAT > 263 BURPS1106A_1154 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_transporter YP_001065433.1 11 MTAPQPCARQPARAAAAAFVGTMIEWYDFYIYATAAALVFGELYFPSGDPFVSTMASFGTFAVGFFARPLGGVVFGHLGDRIGRKKALMTTLAMMGAATVCIGLLPSHASIGALAPVLLVLLRIVQGVAVGGEWGGAVLMAGEHAPDGRRTFFASFAQLGSPAGLILSLVAFRAATSLEKADFLAWGWRLPFLASAVLLIVGLAIRLGVNESPEFEAVKRTRATAKLPIADVLRSASGLVLLCIGANTIGIAGVYFTNTFMIAYTTQQLGIPRATILDCLFAVAIIQFVAQPAAAWLAEKLGGARFLKLAAVAAMASPYPMFMLVTSGRPGAIVAGIALAVVCMAGFYSVIAGFVSGVFAARIRYSAISLSYQVCGALAGGLTPLVGTWLAHRYAGAWLPLALFYTCLAGLSLVSVVALDARRAARGASGREALEAR beta_subgroup Burkholderia_pseudomallei_1106a Burkholderia_pseudomallei_1106a NC_009076 1133263..1134576 NA NA 0:1314 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000572.Source_DNA_is_available_from_BEIresources(http://www.beiresources.org/).COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_pseudomallei_1106a_chromosome_chromosome_I,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_A3NSW2_BURP0.gb Pseudomonas_RNA_homology_group_II 126451443 Submitted_(01-MAR-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_009076 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1314 I genomic_DNA NA 1106a NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 357348 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_009076.1 ATGACTGCCCCCCAACCGTGCGCGCGCCAGCCGGCGCGCGCCGCTGCCGCCGCGTTCGTCGGCACGATGATCGAGTGGTACGACTTCTACATTTACGCGACCGCCGCCGCGCTCGTGTTCGGCGAGTTGTACTTTCCGTCGGGCGACCCGTTCGTCAGCACGATGGCTTCGTTCGGCACGTTCGCGGTCGGCTTTTTCGCGCGGCCGCTCGGCGGCGTCGTGTTCGGCCATCTCGGCGACCGGATCGGCCGCAAGAAGGCGCTGATGACGACGCTCGCGATGATGGGCGCGGCGACCGTGTGCATCGGCCTGTTGCCGAGCCATGCGTCGATCGGTGCGCTCGCGCCGGTGCTGCTCGTGCTGCTGCGGATCGTGCAGGGCGTCGCGGTGGGCGGCGAGTGGGGCGGCGCGGTGCTGATGGCGGGCGAGCACGCGCCCGACGGGCGGCGCACGTTCTTCGCTTCGTTCGCGCAGTTGGGCAGCCCGGCCGGGCTGATCCTGTCGCTCGTCGCGTTTCGCGCGGCCACGTCGCTCGAGAAGGCGGACTTTCTCGCATGGGGCTGGCGCCTGCCGTTTCTCGCGAGCGCGGTGCTGCTGATCGTCGGTCTCGCGATCCGGCTGGGCGTGAACGAATCGCCGGAATTCGAGGCGGTGAAGCGCACGCGCGCCACCGCGAAGCTGCCGATCGCCGACGTGTTGCGCTCCGCGTCGGGGCTCGTGCTGCTGTGCATCGGCGCGAACACGATCGGCATCGCCGGCGTGTATTTCACGAACACGTTCATGATCGCGTACACGACGCAGCAGCTCGGCATCCCGCGCGCGACGATCCTCGATTGCCTGTTCGCGGTCGCGATCATCCAGTTCGTCGCGCAGCCCGCCGCCGCGTGGCTGGCCGAAAAGCTCGGCGGCGCGCGTTTCCTGAAGCTCGCGGCCGTCGCCGCGATGGCTTCGCCGTATCCGATGTTCATGCTCGTGACGAGCGGGCGGCCCGGCGCGATCGTCGCCGGCATCGCGCTCGCGGTGGTCTGCATGGCGGGCTTCTATTCGGTGATCGCGGGTTTCGTCTCCGGCGTGTTCGCGGCGCGCATCCGCTATTCGGCGATCTCGCTGTCCTACCAGGTGTGCGGCGCGCTCGCGGGCGGCCTCACGCCGCTCGTCGGCACGTGGCTCGCGCATCGCTACGCGGGCGCATGGCTGCCGCTCGCGCTGTTCTATACGTGTCTCGCGGGGCTCTCGCTCGTGAGCGTCGTCGCGCTCGACGCGCGCCGCGCCGCGCGAGGCGCTTCGGGCCGCGAAGCGCTGGAGGCGCGCTGA > 264 BURPS1106A_1492 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 proline/betaine_transporter YP_001065766.1 11 MRPFTLATDPRPIASGTPGKPWRTAPRRAVRPPSQEFSTLTATPAPSSSSSAPTEGALPAAAHEITVVDQGLLKRAVGAMALGNAMEWFDFGVYSYIAVTLGQVFFPSSSPSAQLLATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAMTMIMMAVGTFAIGLIPSYDSIGLLAPVLLLVARLVQGFSTGGEYGGAATFIAEFSTDKRRGFMGSFLEFGTLIGYVMGAGVVALLTASLSHDALLSWGWRVPFLIAGPLGLIGLYIRMRLEETPAFKRQAEAREAQDKAVPKAHFRRQLARHWRALLLCVGLVLIFNVTDYMALSYLPSYLSSTLHFDEAHGLVLILIVMVLMMPMTLATGRLSDAVGRKPVMLAGCVGLFALAIPALLLIRTGETALVFGGLLILGALLSCFTGVMPSALPALFPTEIRYGALAIGFNVSVSLFGGTTPLAAAWLVDATGNLMMPAYYLMGAAVIGAISVLALPESARQPLKGSPPAVASHREAHALAREIKRREAAERDDSGYPSAAALRA beta_subgroup Burkholderia_pseudomallei_1106a Burkholderia_pseudomallei_1106a NC_009076 1448522..1450126 NA NA 0:1605 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000572.Source_DNA_is_available_from_BEIresources(http://www.beiresources.org/).COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_pseudomallei_1106a_chromosome_chromosome_I,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_A3NTU5_BURP0.gb Pseudomonas_RNA_homology_group_II 126451443 Submitted_(01-MAR-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_009076 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1605 I genomic_DNA NA 1106a NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 357348 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_009076.1 TCACGCGCGCAACGCCGCGGCCGACGGGTAGCCGCTGTCGTCGCGCTCGGCCGCCTCGCGGCGCTTGATCTCGCGCGCGAGCGCGTGTGCCTCGCGGTGCGACGCGACGGCGGGCGGCGAGCCCTTGAGCGGCTGGCGCGCGCTCTCGGGCAGCGCGAGCACCGAGATCGCGCCGATCACGGCCGCGCCCATCAGGTAGTACGCGGGCATCATCAGGTTGCCCGTCGCGTCGACGAGCCACGCGGCGGCGAGCGGCGTCGTGCCGCCGAACAGCGACACCGACACGTTGAAGCCGATCGCGAGCGCGCCGTAGCGGATCTCGGTCGGAAAGAGCGCGGGCAGCGCCGACGGCATCACGCCCGTGAAGCACGACAGCAGTGCGCCGAGGATCAGCAGGCCGCCGAACACGAGCGCCGTCTCGCCGGTGCGGATCAGGAGCAGCGCGGGAATCGCGAGCGCGAAGAGCCCGACGCAGCCGGCGAGCATCACCGGCTTGCGGCCGACGGCGTCCGACAGGCGGCCCGTGGCGAGCGTCATCGGCATCATCAGCACCATCACGATCAGGATCAGCACGAGGCCGTGCGCCTCGTCGAAGTGCAGCGTCGACGACAGATAGCTCGGCAGGTACGACAGCGCCATGTAATCGGTGACGTTGAAGATCAGCACGAGGCCGACGCACAGCAGCAGCGCGCGCCAGTGCCGCGCGAGCTGTCGGCGGAAATGCGCCTTCGGCACGGCCTTGTCCTGCGCTTCGCGCGCTTCGGCCTGCCGCTTGAACGCGGGCGTTTCCTCGAGCCTCATCCGGATGTACAGGCCGATCAGGCCGAGCGGGCCGGCGATCAGGAACGGCACGCGCCAGCCCCACGACAGCAGCGCGTCGTGCGACAGCGAAGCCGTCAGCAGCGCGACGACGCCCGCGCCCATCACATAGCCGATCAGCGTGCCGAACTCGAGGAAGCTGCCCATGAAGCCGCGGCGCTTGTCGGTCGAGAACTCGGCGATGAAGGTTGCCGCGCCGCCGTACTCGCCGCCCGTCGAGAAGCCTTGCACGAGACGCGCGACGAGGAGCAGCACGGGCGCGAGGAGGCCGATCGAGTCGTAGCTCGGGATCAGGCCGATCGCGAACGTGCCGACCGCCATCATGATCATCGTCATCGCGAGCACGCGCTGGCGGCCGATGCGATCGCCGAGCGGCCCGAACACCATCCCGCCGAGCGGGCGCACGAGGAAGGCGGCGGCGAACGTGCCGAACGTCGCGAGCAACTGCGCGGACGGGCTGCTCGACGGGAAGAACACCTGGCCGAGCGTGACGGCGATGTAGCTGTAGACGCCGAAGTCGAACCATTCCATCGCGTTGCCGAGCGCCATCGCGCCGACGGCGCGCTTGAGCAGGCCCTGATCGACGACGGTGATCTCGTGCGCAGCGGCGGGAAGCGCGCCTTCGGTGGGCGCGCTGGACGAACTGGAGGGGGCGGGTGTTGCAGTCAAGGTCGAAAACTCCTGTGACGGCGGCCGAACCGCGCGACGGGGCGCGGTTCGCCACGGTTTGCCGGGAGTGCCGCTCGCGATCGGACGAGGGTCGGTCGCGAGCGTGAAAGGGCGCAT > 265 BURPS1106A_2044 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 MFS_transporter,_metabolite:H+_symporter_(MHS)_family_protein YP_001066309.1 11 MKQSAVPLDTGTAVSPPTSSAGRAIAAASIGNALEWYDFSVYAFFAVYIARNFFHRGNTGTELVEAFMAFGIGFIARPLGALAIGVYGDRAGRKAALTLTILVMATGTGVIAFAPPYAAIGVGAPLLILCGRLLQGFSAGGEVGGAAAFLIEHAPADRKGCYASCLQASMAASNILGALVATGVTLTLTREQIGDWGWRIPFILGLAIAPVGLWLRRTLDETPHFRAEMARAQHAHAEQKAPLLQVVRDHPRALAVGTGFSVLWAVCVYALVIYMPTHAQRALHFDGRDAFIASLVGNCLMAVTCVCAGSWSDRLGRRTVLAAGAALMLVSVYPLLRWLSDVHTLAALLTVQSAFCVLVAIFTGVAPAALSELFPTRVRATGMSLSYNIATTIFGGFAPAILAWLTQQTGNPFAPAWYVMVASAIALASIAALSSTPRHA beta_subgroup Burkholderia_pseudomallei_1106a Burkholderia_pseudomallei_1106a NC_009076 2027478..2028800 NA NA 0:1323 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000572.Source_DNA_is_available_from_BEIresources(http://www.beiresources.org/).COMPLETENESS:_full_length. NA 25-JAN-2012 Burkholderia_pseudomallei_1106a_chromosome_chromosome_I,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_A3NVD8_BURP0.gb Pseudomonas_RNA_homology_group_II 126451443 Submitted_(01-MAR-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_009076 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1323 I genomic_DNA NA 1106a NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 357348 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_009076.1 GTGAAGCAATCCGCAGTTCCCCTCGACACGGGCACGGCCGTGTCGCCCCCTACGTCGAGCGCCGGGCGAGCAATCGCCGCGGCGTCGATCGGCAACGCGCTCGAGTGGTACGACTTTTCCGTCTATGCATTCTTCGCCGTCTACATCGCGCGGAACTTCTTCCATCGAGGCAACACCGGCACCGAGCTGGTCGAGGCTTTCATGGCGTTCGGCATCGGCTTCATCGCACGGCCGCTCGGCGCGCTCGCGATCGGCGTATACGGCGACCGCGCGGGCCGCAAGGCCGCGCTCACGCTGACCATCCTCGTGATGGCAACCGGCACGGGCGTCATCGCGTTCGCGCCGCCATACGCCGCGATCGGCGTGGGCGCGCCGCTGCTGATCCTCTGCGGGAGGCTACTGCAGGGCTTCTCGGCGGGCGGCGAAGTGGGCGGCGCGGCGGCGTTTCTCATCGAGCACGCGCCGGCGGACCGCAAGGGCTGCTACGCGTCGTGTCTGCAGGCGAGCATGGCCGCGTCGAACATCCTCGGCGCGCTGGTCGCGACCGGCGTGACGCTTACGCTGACGCGCGAACAGATCGGCGATTGGGGATGGCGGATTCCGTTCATCCTCGGCCTCGCGATCGCGCCGGTCGGCCTCTGGCTGCGCAGGACGCTCGACGAGACGCCGCACTTCCGCGCCGAGATGGCGCGCGCGCAGCACGCGCATGCGGAACAGAAAGCGCCGCTTCTGCAGGTGGTGCGCGACCACCCGCGCGCGCTCGCCGTCGGCACGGGATTCTCGGTGCTCTGGGCCGTGTGCGTCTACGCGCTGGTGATCTATATGCCGACGCACGCGCAGCGCGCACTGCATTTCGACGGGCGCGACGCGTTCATCGCGTCGCTGGTCGGCAACTGCCTGATGGCCGTCACCTGCGTGTGCGCGGGAAGCTGGTCCGACCGCCTCGGCCGGCGCACGGTGCTCGCCGCCGGCGCGGCGCTGATGCTCGTGTCGGTCTATCCGCTGCTGCGCTGGCTGAGCGACGTGCACACGCTCGCCGCGCTCCTTACCGTCCAGAGCGCGTTCTGCGTGTTGGTGGCCATCTTCACGGGAGTGGCGCCCGCAGCGCTGTCGGAGCTGTTCCCGACCCGCGTACGTGCGACCGGCATGTCCCTGTCCTACAACATCGCCACGACGATCTTCGGCGGCTTCGCGCCCGCGATCCTCGCATGGCTCACGCAACAGACCGGCAATCCGTTTGCGCCGGCCTGGTACGTGATGGTGGCGAGCGCCATCGCGCTCGCATCGATCGCCGCGCTTTCTTCCACGCCACGCCACGCCTGA > 266 BURPS1106A_A1432 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter YP_001075466.1 11 MSTLDLDAPISTPIRTASDVSRLINASGARANHARVIVLLALGGVFLDAYDLTTLSYGIEDVTREFGLTPALSGLVSASIMIGTILGSLLGGWFTDKVGRYRVFMADMLCFVVAAIVAGLAPNVEVLIAARFVMGLGVGIDLPVAMAFLAEFSKFGGRGNKASRLAAWCPMWYAASSVCFLIVFGLYFALPAEHARWLWRASLIFGAVPALAIIAVRGRYMNESPLWAANQGKLRDAARILRESYGIRAHAADDTPRAAPSQPPVSFRVLFRQPYLPRTLVASAMNLCIPFEYTAIAFFLPTILTQFLGAGVFETIAATLALNVLFALTGGLLGMRLAYRLPSRRVAIAGFALQAAALVTLALLGHPQTALGIGAAVLMLGLWLFAEGFGPGAQMMIYPALSYPASIRGTGLGFGRALTGIGSAFALFVLPILNARLGAGMFWIVAIAAFVPIVFLAAIRFEPTARDVDVDIDAGSRAQGDRARVRAAA beta_subgroup Burkholderia_pseudomallei_1106a Burkholderia_pseudomallei_1106a NC_009078 1394946..1396415 NA NA 0:1470 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000573.Source_DNA_is_available_from_BEIresources(http://www.beiresources.org/).COMPLETENESS:_full_length. NA 05-JAN-2011 Burkholderia_pseudomallei_1106a_chromosome_chromosome_II,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_A3P556_BURP0.gb Pseudomonas_RNA_homology_group_II 126455463 Submitted_(01-MAR-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_009078 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1470 II genomic_DNA NA 1106a NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 357348 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_009078.1 CTACGCGGCGGCGCGCACGCGCGCTCGATCGCCTTGCGCACGCGAGCCGGCATCGATATCGACATCGACATCGCGCGCGGTCGGCTCGAAGCGAATCGCCGCGAGAAACACGATCGGCACGAATGCCGCGATCGCCACGATCCAGAACATGCCGGCGCCGAGGCGCGCGTTGAGGATCGGCAGCACGAACAGCGCGAACGCGCTGCCGATGCCCGTCAGCGCACGCCCGAAGCCGAGCCCCGTGCCGCGAATCGACGCCGGATACGACAGCGCCGGATAAATCATCATCTGCGCGCCGGGGCCGAAGCCTTCGGCGAACAGCCACAGGCCGAGCATCAGCACCGCGGCGCCGATGCCGAGCGCGGTCTGCGGATGGCCGAGCAGCGCGAGCGTGACGAGCGCCGCGGCCTGCAACGCGAAGCCGGCGATCGCGACGCGCCGCGACGGCAGCCGGTACGCGAGGCGCATGCCGAGCAACCCGCCCGTGAGCGCGAACAGCACGTTGAGCGCGAGCGTCGCGGCGATCGTCTCGAACACGCCCGCGCCGAGGAACTGCGTCAGGATCGTCGGCAGGAAGAACGCGATCGCCGTGTATTCGAACGGGATGCACAGATTCATCGCGCTCGCGACGAGCGTGCGCGGCAGGTACGGCTGCCTGAACAGCACGCGAAAACTGACGGGCGGCTGCGACGGTGCCGCGCGCGGCGTGTCGTCGGCCGCATGCGCGCGGATCCCGTACGACTCGCGCAGGATGCGCGCGGCGTCGCGCAGCTTGCCTTGATTCGCGGCCCACAGCGGCGATTCGTTCATGTAGCGGCCGCGTACCGCGATGATCGCGAGCGCCGGCACCGCGCCGAAGATCAGCGACGCGCGCCACAGCCAGCGCGCGTGCTCGGCGGGCAGCGCGAAATACAGCCCGAACACGATCAGGAAGCACACGGACGACGCCGCGTACCACATCGGGCACCACGCGGCGAGCCGCGACGCCTTGTTGCCGCGCCCGCCGAATTTCGAGAACTCGGCCAGGAACGCCATCGCGACCGGCAGATCGATGCCGACGCCGAGCCCCATCACGAAGCGCGCGGCGATCAGCACCTCTACGTTCGGCGCGAGTCCGGCCACGATCGCGGCGACGACGAAGCAGAGCATGTCGGCCATGAACACGCGGTAGCGGCCGACCTTGTCGGTGAACCAGCCGCCGAGCAGGCTGCCGAGGATCGTGCCGATCATGATCGACGCGCTGACGAGCCCGCTCAGCGCCGGCGTCAGGCCGAACTCGCGGGTCACGTCCTCGATGCCGTACGACAGCGTGGTCAGATCGTACGCATCGAGGAACACGCCGCCGAGCGCGAGCAGGACGATCACGCGCGCGTGGTTCGCGCGCGCGCCCGATGCGTTGATGAGGCGCGAAACGTCGCTCGCGGTGCGGATCGGCGTCGAGATCGGCGCGTCGAGATCGAGTGTGCTCAC > 267 BURPS305_4505 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EBA48831.1 11 MATVGGQIAHAPMTGDEKRVIFASSLGTVFEWYDFYLAGSLAAYISKSFFSGVNPTAAFIFTLLGFAAGFAVRPFGAIVFGRLGDLVGRKHTFLITIVIMGISTFVVGFLPGYASIGIAAPVIFIAMRLLQGLALGGEYGGAATYVAEHAPSHRRGFYTSWIQTTATLGLFLSLLVILGVRTAIGEEAFGSWGWRVPFVASILLLAVSVWIRLQLNESPVFLRIKAEGKTSKAPLTEAFGQWKNLKIVILALIGLTAGQAVVWYTGQFYALFFLTQTLKVDGASANILIALALLIGTPFFVFFGSLSDRIGRKPIILAGCLIAALTYFPLFKALTHFANPALEAATQKAPITVVANPDECSFQFNPVGTAKFTSSCDIAKSALAKSGLNYENVAAPAGTLAQIKIGDTAIATYDGKAADAKDQAKAFDKTLASTLKAAGYPAKADPAQLNWPMTTVILAILVIYVTMVYGPIAAMLVEMFPTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAAKGDIYSGLWYPIGVALVTFVIGLLFVKETKDSNIYAQD beta_subgroup Burkholderia_pseudomallei_305 Burkholderia_pseudomallei_305 AAYX01000004 123637..125295 Nelson,W.C.,_Wagner,D.,_Currie,B.,_Tuanyok,A.,_Mayo,M.,_Schupp,J.,_Lum,G.,_Keim,P._and_Brettin,T. NA 0:1659 The_authors_wish_to_acknowledge_the_Intelligence_TechnologyInnovation_Center_for_funding_the_sequencing_and_the_NIH/NIAID_forfunding_the_annotation_at_the_Pathema_Bioinformatics_ResourceCenter.The_NIAID_funded_Bioinformatics_Resource_Center_PathoSystemsResource_Integration_Center_(PATRIC;_http://patricbrc.vbi.vt.edu/)is_responsible_for_annotation_updates_of_this_record. NA 28-MAR-2007 Burkholderia_pseudomallei_305,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_A4LIS5_BURPS.gb Pseudomonas_RNA_homology_group_II 134248618 Submitted_(05-MAR-2007)_Bioscience_Division,_Joint_Genome_Institute,_Los_Alamos_National_Laboratory,_Los_Alamos,_NM,_USA NA AAYX01000004 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1659 NA genomic_DNA NA 305 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 425067 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA AAYX01000004.1 ATGGCAACGGTTGGCGGACAAATTGCGCACGCGCCGATGACGGGCGACGAAAAGCGCGTGATCTTCGCATCGTCGCTCGGCACCGTGTTCGAGTGGTACGACTTCTATCTGGCCGGCTCGCTCGCGGCCTACATCAGCAAGAGCTTCTTTTCAGGCGTCAATCCGACCGCCGCGTTCATCTTCACGCTGCTCGGCTTCGCGGCGGGCTTCGCCGTCCGACCGTTCGGCGCGATCGTGTTCGGCCGCCTCGGCGACCTCGTGGGACGCAAGCATACGTTCCTCATCACGATCGTGATCATGGGGATCTCGACGTTCGTCGTCGGCTTCCTGCCGGGCTACGCGTCGATCGGCATCGCCGCGCCCGTGATCTTCATCGCGATGCGGCTGCTGCAAGGCCTCGCGCTCGGCGGCGAATACGGCGGCGCGGCGACATACGTCGCCGAGCATGCACCCTCGCACCGCCGCGGCTTCTATACGTCGTGGATCCAGACGACCGCGACGCTCGGCCTGTTCCTGTCGCTCCTCGTGATTCTCGGCGTGCGCACCGCGATCGGCGAGGAAGCATTCGGCAGTTGGGGCTGGCGCGTGCCGTTCGTCGCGTCGATCCTGCTGCTCGCCGTATCCGTGTGGATCCGCCTGCAACTGAACGAATCGCCGGTGTTCCTGCGGATCAAGGCCGAGGGCAAGACGTCGAAGGCGCCGCTCACCGAAGCGTTCGGCCAGTGGAAGAACCTGAAGATCGTGATCCTCGCGCTCATCGGGCTGACGGCGGGCCAGGCGGTGGTCTGGTACACGGGCCAGTTCTATGCGCTCTTCTTCCTCACGCAAACGCTGAAGGTCGACGGCGCGAGCGCGAACATCCTGATCGCGCTCGCCCTTCTGATCGGCACGCCGTTCTTCGTGTTCTTCGGCTCGCTGTCCGACAGGATCGGCCGCAAGCCGATCATCCTCGCCGGCTGCCTGATCGCCGCGCTCACCTACTTCCCGCTCTTCAAGGCGCTCACGCACTTCGCGAATCCGGCGCTCGAGGCGGCGACGCAAAAGGCGCCGATCACGGTGGTCGCCAATCCCGACGAATGCTCGTTCCAGTTCAACCCGGTGGGCACGGCGAAGTTCACGTCGTCCTGCGACATCGCGAAAAGCGCGCTCGCGAAATCGGGCCTCAATTACGAGAACGTCGCCGCGCCGGCGGGCACGCTTGCGCAGATCAAGATCGGCGACACGGCGATCGCCACGTACGACGGCAAGGCCGCCGACGCAAAAGACCAGGCGAAGGCGTTCGACAAGACGCTCGCGTCGACGCTGAAGGCGGCGGGCTACCCGGCGAAAGCCGACCCGGCCCAGCTCAACTGGCCGATGACGACGGTGATCCTCGCGATACTCGTGATCTACGTGACGATGGTGTACGGGCCGATCGCGGCGATGCTGGTCGAGATGTTCCCGACGCGGATTCGCTATACGTCGATGTCGCTGCCGTATCACATCGGCAACGGCTGGTTCGGCGGCTTCCTGCCGGCGACGGCGTTCGCGATCGTCGCGGCGAAGGGCGACATCTATTCGGGGCTCTGGTATCCGATCGGCGTCGCGCTCGTCACGTTCGTGATCGGGCTGCTGTTCGTGAAGGAAACCAAGGATTCGAATATCTACGCGCAGGATTGA > 268 BURPS406E_R0264 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family EDO85480.1 11 MTAPQPCARQPARAAAAAFVGTMIEWYDFYIYATAAALVFGELYFPSGDPFVSTMASFGTFAVGFFARPLGGVVFGHLGDRIGRKKALMTTLAMMGAATVCIGLLPSHASIGALAPVLLVLLRIVQGVAVGGEWGGAVLMAGEHAPDGRRTFFASFAQLGSPAGLILSLVAFRAATSLEKADFLAWGWRLPFLASAVLLIVGLAIRLGVNESPEFEAVKRTRATAKLPIADVLRSASGLVLLCIGANTIGIAGVYFTNTFMIAYTTQQLGIPRATILDCLFAVAIIQFVAQPAAAWLAEKLGGARFLKLAAVAAMASPYPMFMLVTSGRPGAIVAGIALAVVCMAGFYSVIAGFVSGVFAARIRYSAISLSYQVCGALAGGLTPLVGTWLAHRYAGAWLPLALFYTCLAGLSLVSVVALDARRAARGASGREALEAR beta_subgroup Burkholderia_pseudomallei_406e Burkholderia_pseudomallei_406e CH899730 256071..257384 DeShazer,D.,_Woods,D.E._and_Nierman,W.C. NA 0:1314 Annotation_was_added_to_the_scaffolds_in_October_2007. NA 03-OCT-2007 Burkholderia_pseudomallei_406e_scf_1041048331276,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_A8EFX1_BURPS.gb Pseudomonas_RNA_homology_group_II 101069806 Unpublished NA CH899730 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1314 NA genomic_DNA NA 406e NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 360118 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Annotation_of_Burkholderia_pseudomallei_406e NA CH899730.1 ATGACTGCCCCCCAACCGTGCGCGCGCCAGCCGGCGCGCGCCGCTGCCGCCGCGTTCGTCGGCACGATGATCGAGTGGTACGACTTCTACATTTACGCGACCGCCGCCGCGCTCGTGTTCGGCGAGTTGTACTTTCCGTCGGGCGACCCGTTCGTCAGCACGATGGCTTCGTTCGGCACGTTCGCGGTCGGCTTTTTCGCGCGGCCGCTCGGCGGCGTCGTGTTCGGCCATCTCGGCGACCGGATCGGCCGCAAGAAGGCGCTGATGACGACGCTCGCGATGATGGGCGCGGCGACCGTGTGCATCGGCCTGTTGCCGAGCCATGCGTCGATCGGTGCGCTCGCGCCGGTGCTGCTCGTGCTGCTGCGGATCGTGCAGGGCGTCGCGGTGGGCGGCGAGTGGGGCGGCGCGGTGCTGATGGCGGGCGAGCACGCGCCCGACGGGCGGCGCACGTTCTTCGCTTCGTTCGCGCAGTTGGGCAGCCCGGCCGGGCTGATCCTGTCGCTCGTCGCGTTTCGCGCGGCCACGTCGCTCGAGAAGGCGGACTTTCTCGCATGGGGCTGGCGCCTGCCGTTTCTCGCGAGCGCGGTGCTGCTGATCGTCGGTCTCGCGATCCGGCTGGGCGTGAACGAATCGCCGGAATTCGAGGCGGTGAAGCGCACGCGCGCCACCGCGAAGCTGCCGATCGCCGACGTGTTGCGCTCCGCGTCGGGGCTCGTGCTGCTGTGCATCGGCGCGAACACGATCGGCATCGCCGGCGTGTATTTCACGAACACGTTCATGATCGCGTACACGACGCAGCAGCTCGGCATCCCGCGCGCGACGATCCTCGATTGCCTGTTCGCGGTCGCGATCATCCAGTTCGTCGCGCAGCCCGCCGCCGCGTGGTTGGCCGAAAAGCTCGGCGGCGCGCGTTTCCTGAAGCTCGCGGCCGTCGCCGCGATGGCTTCGCCGTATCCGATGTTCATGCTCGTGACGAGCGGGCGGCCCGGCGCGATCGTCGCCGGCATCGCGCTCGCGGTGGTCTGCATGGCGGGCTTCTATTCGGTGATCGCGGGTTTCGTCTCCGGCGTGTTCGCGGCGCGCATCCGCTATTCGGCGATCTCGCTGTCCTACCAGGTGTGCGGCGCGCTCGCGGGCGGCCTCACGCCGCTCGTCGGCACGTGGCTCGCGCATCGCTACGCGGGCGCATGGCTGCCGCTCGCGCTGTTCTATACGTGTCTCGCGGGGCTCTCGCTCGTGAGCGTCGTCGCGCTCGACGCGCGCCGCGCCGCGCGAGGCGCTTCGGGCCGCGAAGCACTGGAGGCGCGCTGA > 269 BURPS406E_D1111 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EDO87875.1 11 MPAAPAVPSRAARASAAARLERLPFSGYHKLIFVIIAIAFFFDSVDLGTMTFVLGSIKREFGLSTATAGLVASASFFGMVLGAAVAGLLADRFGRRPVFQWSMVLWGAASYLCSTAQSVDALIVYRVLLGIGMGMEFPVAQTLLSEFVPAAKRGRLIALMDGFWPLGFITAGIVSYFVLPLFGWRTVFALLALPAVFVLVVRRLVPESPRWLEHRGRLAEAGRVLAHVEAKVMKSARVASLPAPSRLAESACAQGRGAFGEIWSAAYRRRTTMVWLLWFFALLGFYGLTSWLGALLQQAGFAVTQSVFYTVLISLGGIPGFLCAAWLVERWGRKPTCIASLVGGGAMAYVYGQSALFGGSVTLLVGTGLAMQFFLFGMWAVLYTYTPELYGTGARATGSGFASAIGRVGSLIGPYAVGIVLPVFGQGGVFTLGALSFVVAALAVGVLGIETQGLALEALASTHAADDDARDPAGAAAN beta_subgroup Burkholderia_pseudomallei_406e Burkholderia_pseudomallei_406e CH899738 1006512..1007948 DeShazer,D.,_Woods,D.E._and_Nierman,W.C. NA 0:1437 Annotation_was_added_to_the_scaffolds_in_October_2007. NA 03-OCT-2007 Burkholderia_pseudomallei_406e_scf_1041048331285,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_A8EQ61_BURPS.gb Pseudomonas_RNA_homology_group_II 101069782 Unpublished NA CH899738 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1437 NA genomic_DNA NA 406e NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 360118 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Annotation_of_Burkholderia_pseudomallei_406e NA CH899738.1 TCAGTTCGCCGCCGCGCCCGCGGGATCGCGCGCATCGTCGTCGGCGGCATGCGTCGACGCGAGCGCCTCGAGCGCCAGGCCTTGGGTCTCGATTCCCAGCACGCCTACCGCCAGTGCCGCGACGACGAACGACAGCGCGCCGAGCGTGAACACGCCCCCTTGTCCGAATACGGGCAGCACGATGCCGACCGCGTACGGCCCGATCAGCGAGCCGACCCGCCCGATCGCCGACGCGAAACCCGAGCCGGTTGCGCGCGCGCCCGTGCCGTAGAGCTCCGGCGTGTACGTGTAGAGCACCGCCCACATCCCGAACAGGAAGAACTGCATCGCGAGCCCGGTGCCGACGAGCAGCGTCACGCTGCCGCCGAACAGCGCGCTCTGGCCGTACACGTAGGCCATCGCGCCCCCGCCGACGAGCGACGCGATGCAGGTCGGCTTGCGGCCCCAGCGCTCGACGAGCCACGCCGCGCACAGGAAGCCCGGAATGCCGCCGAGCGAGATCAGCACCGTATAGAACACGGATTGCGTGACGGCGAAGCCGGCTTGCTGCAGGAGCGCGCCGAGCCACGACGTGAGCCCGTAGAAACCGAGCAGCGCGAAAAACCACAGCAGCCAGACCATCGTCGTGCGGCGGCGGTAGGCGGCGCTCCAGATCTCGCCGAACGCACCGCGGCCCTGCGCGCAAGCCGACTCGGCAAGCCGCGACGGCGCGGGCAGGCTCGCCACGCGCGCGGACTTCATGACCTTTGCCTCGACGTGCGCGAGCACGCGCCCGGCCTCGGCGAGCCGGCCGCGATGCTCGAGCCAGCGCGGCGATTCCGGCACGAGCCGGCGCACGACGAGCACGAACACGGCGGGCAGCGCGAGCAGCGCGAACACGGTGCGCCAGCCGAACAGCGGCAGCACGAAGTACGACACGATGCCGGCGGTGATGAAGCCGAGCGGCCAGAAGCCGTCCATCAGCGCGATCAGCCGGCCGCGCTTCGCGGCGGGAACGAACTCGGACAGCAGCGTTTGCGCGACCGGGAATTCCATCCCCATGCCGATGCCGAGCAGCACGCGATAGACGATCAGCGCGTCGACGCTCTGCGCGGTCGAGCACAGGTACGACGCCGCGCCCCATAGCACCATGCTCCACTGGAAGACGGGCCGCCGGCCGAAGCGGTCCGCGAGCAGCCCCGCGACCGCCGCGCCGAGCACCATGCCGAAGAAGCTCGCGCTCGCGACGAGGCCGGCTGTCGCCGTCGACAGGCCGAACTCCCGCTTGATGGAGCCGAGCACGAAAGTCATCGTGCCGAGGTCGACCGAATCGAAGAAGAACGCGATCGCGATGATCACGAAGATGAGCTTGTGGTATCCGGAAAACGGCAATCGTTCGAGGCGGGCGGCGGCGCTGGCGCGCGCGGCGCGCGACGGGACGGCGGGAGCGGCTGGCAT > 270 BURPSPAST_T0221 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EDO90011.1 11 MPAAPAVPSRAARASAAARLERLPFSGYHKLIFVIIAIAFFFDSVDLGTMTFVLGSIKREFGLSTATAGLVASASFFGMVLGAAVAGLLADRFGRRPVFQWSMVLWGAASYLCSTAQSVDALIVYRVLLGIGMGMEFPVAQTLLSEFVPAAKRGRLIALMDGFWPLGFITAGVVSYFVLPLFGWRTVFALLALPAVFVLVVRRLVPESPRWLEHRGRLAEAGRVLAHVEAKVMKSARVASLPAPSRLAEPACAQGRGAFGEIWSAAYRRRTTMVWLLWFFALLGFYGLTSWLGALLQQAGFAVTQSVFYTVLISLGGIPGFLCAAWLVERWGRKPTCIASLVGGGAMAYVYGQSALFGGSVTLLVGTGLAMQFFLFGMWAVLYTYTPELYGTGARATGSGFASAIGRVGSLIGPYAVGIVLPVFGQGGVFTLGALSFVVAALAVGVLGIETQGLALEALASTHAADDDARDPAGAAAN beta_subgroup Burkholderia_pseudomallei_Pasteur_52237 Burkholderia_pseudomallei_Pasteur_52237 CH899742 13612..15048 DeShazer,D.,_Woods,D.E._and_Nierman,W.C. NA 0:1437 Annotation_was_added_to_the_scaffolds_in_October_2007. NA 05-OCT-2007 Burkholderia_pseudomallei_Pasteur_52237_scf_1041069936522,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_A8KFW9_BURPS.gb Pseudomonas_RNA_homology_group_II 101065453 Unpublished NA CH899742 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1437 NA genomic_DNA NA Pasteur_52237 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 331978 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Annotation_of_Burkholderia_pseudomallei_Pasteur_52237 NA CH899742.1 ATGCCAGCCGCTCCCGCCGTCCCGTCGCGCGCCGCACGCGCCAGCGCCGCCGCCCGCCTCGAACGATTGCCGTTTTCCGGATACCACAAGCTCATCTTCGTGATCATCGCGATCGCGTTCTTCTTCGATTCGGTCGACCTCGGCACGATGACTTTCGTGCTCGGCTCCATCAAGCGGGAGTTCGGCCTGTCGACGGCGACAGCCGGCCTCGTCGCGAGCGCGAGCTTCTTCGGCATGGTGCTCGGCGCGGCGGTCGCGGGGCTGCTCGCGGACCGCTTCGGCCGGCGGCCCGTCTTCCAGTGGAGCATGGTGCTATGGGGCGCGGCGTCGTACCTGTGCTCGACCGCGCAGAGCGTCGACGCGCTGATCGTCTATCGCGTGCTGCTCGGCATCGGCATGGGGATGGAATTTCCGGTCGCGCAAACGCTGCTGTCCGAGTTCGTTCCCGCCGCGAAGCGCGGCCGGCTGATCGCGCTGATGGACGGCTTCTGGCCGCTCGGCTTCATCACCGCCGGCGTCGTGTCGTACTTCGTGCTGCCGCTGTTCGGCTGGCGCACCGTGTTCGCGCTGCTCGCGCTGCCCGCCGTGTTCGTGCTCGTCGTGCGCCGGCTCGTGCCGGAATCGCCGCGCTGGCTCGAGCATCGCGGCCGGCTCGCCGAGGCCGGGCGCGTGCTCGCGCACGTCGAGGCAAAGGTCATGAAGTCCGCGCGCGTGGCGAGCCTGCCCGCGCCGTCGCGGCTTGCCGAGCCGGCTTGCGCGCAGGGCCGCGGTGCGTTCGGCGAGATCTGGAGCGCCGCCTACCGCCGCCGCACGACGATGGTCTGGCTGCTGTGGTTTTTCGCGCTGCTCGGTTTCTACGGGCTCACGTCGTGGCTCGGCGCGCTCCTGCAGCAAGCCGGCTTCGCCGTCACGCAATCCGTGTTCTATACGGTACTGATCTCGCTCGGCGGCATTCCGGGCTTCCTGTGCGCGGCGTGGCTCGTCGAGCGCTGGGGCCGCAAGCCGACCTGCATCGCGTCGCTCGTCGGCGGGGGCGCGATGGCCTACGTGTACGGCCAGAGCGCGCTGTTCGGCGGCAGCGTGACGCTGCTCGTCGGCACCGGGCTCGCGATGCAGTTCTTCCTGTTCGGGATGTGGGCGGTGCTCTACACGTACACGCCGGAGCTCTACGGCACGGGCGCGCGCGCAACCGGCTCGGGTTTCGCGTCGGCGATCGGGCGGGTCGGCTCGCTGATCGGGCCGTACGCGGTCGGCATCGTGCTGCCCGTATTCGGACAAGGGGGCGTGTTCACGCTCGGCGCGCTGTCGTTCGTCGTCGCGGCACTGGCGGTGGGCGTGCTGGGAATCGAGACCCAAGGCCTGGCGCTCGAGGCGCTCGCGTCGACGCATGCCGCCGACGACGATGCGCGCGATCCCGCGGGCGCGGCGGCGAACTGA > 271 BURPSPAST_Z0066 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EDO90877.1 11 MFRRGAPPHRRIERRAPEARMSARHGGAPLALDIGATLDHGPFTAMQRVAVLLAAFAIVLDGFDSQLIGFAIPVLIKEWGITRDAFAPAVAAGLFGMGVGSACAGLFADRFGRRWAIIGSVFVFGAATCAIGFAPNVATIAALRFVAGLGIGGALPTATTMTAEYTPARRRTMMVTATIVCVPAGGMLAGLFAHEVLPAYGWRGLFWLGGALPLALGLLLVRALPESPRYLARNPARWRELGALLARMGRPVADGTAFTDLAEARAHEGQRRGVRALFSAAYARDTIALWCAFCMCLLAVYSAFSWLPTMLTSQGLSVSVAGSGLTAYNLGGVLGALGCALAIGRFGSRWPLAFCCAGGAASAAWLLGVDAGSHAGWLIVGLAAHGFFVNAVQSTMYALCTFIYPTPVRATGTAGAVAFGRVGAILSAFAGAYVISAGGANAYLAMLAAAMAVVLVALLALRRHIPRLRRGGLPAADELARTAP beta_subgroup Burkholderia_pseudomallei_Pasteur_52237 Burkholderia_pseudomallei_Pasteur_52237 CH899746 62496..63950 DeShazer,D.,_Woods,D.E._and_Nierman,W.C. NA 0:1455 Annotation_was_added_to_the_scaffolds_in_October_2007. NA 05-OCT-2007 Burkholderia_pseudomallei_Pasteur_52237_scf_1041069936529,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_A8KKN6_BURPS.gb Pseudomonas_RNA_homology_group_II 101065441 Unpublished NA CH899746 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1455 NA genomic_DNA NA Pasteur_52237 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 331978 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Annotation_of_Burkholderia_pseudomallei_Pasteur_52237 NA CH899746.1 TCAGGGCGCGGTGCGCGCGAGCTCGTCGGCCGCCGGCAGCCCGCCGCGGCGCAGCCGCGGAATGTGCCGGCGCAGCGCGAGCAACGCGACGAGCACGACCGCCATCGCGGCGGCGAGCATCGCCAGGTACGCGTTCGCACCGCCCGCCGAGATCACGTACGCGCCCGCGAACGCGCTCAGGATCGCGCCGACGCGGCCGAACGCGACGGCGCCGGCGGTGCCCGTCGCGCGCACGGGCGTCGGATAGATGAACGTGCAGAGCGCGTACATCGTCGACTGCACCGCGTTCACGAAGAAGCCGTGCGCGGCGAGGCCGACGATCAGCCAGCCGGCGTGGCTGCCGGCATCGACGCCGAGCAGCCACGCGGCGCTCGCCGCGCCGCCCGCACAGCAGAACGCGAGCGGCCAGCGCGAACCGAAACGGCCGATCGCGAGCGCGCAGCCGAGCGCGCCCAGCACGCCGCCGAGGTTGTATGCGGTGAGCCCGGAACCCGCGACCGACACGCTCAAGCCTTGCGACGTCAGCATCGTCGGCAGCCAGCTGAATGCGCTGTAGACGGCGAGCAGGCACATGCAGAATGCGCACCACAACGCGATCGTGTCGCGCGCGTAGGCCGCCGAGAACAGCGCACGCACACCGCGCCGCTGCCCTTCGTGCGCACGCGCCTCGGCAAGATCGGTGAAGGCGGTGCCGTCGGCGACGGGCCGGCCCATGCGCGCGAGCAGCGCGCCGAGCTCGCGCCAGCGCGCAGGATTGCGCGCGAGATAGCGCGGCGATTCGGGCAGCGCGCGCACGAGCAGCAAGCCGAGCGCGAGCGGCAGCGCGCCGCCGAGCCAGAACAGGCCGCGCCAGCCGTACGCGGGCAGCACCTCGTGCGCGAACAGGCCCGCGAGCATCCCGCCCGCCGGCACGCAGACGATCGTCGCCGTCACCATCATCGTGCGGCGGCGCGCGGGCGTGTACTCGGCCGTCATCGTCGTCGCGGTAGGCAGCGCGCCGCCGATCCCGAGGCCCGCGACGAAGCGCAGCGCGGCGATGGTCGCCACGTTCGGCGCGAAGCCGATCGCGCAGGTAGCCGCGCCGAACACGAACACGCTGCCGATGATCGCCCAGCGCCGGCCGAAGCGGTCCGCGAACAGGCCCGCGCACGCGCTGCCGACGCCCATCCCGAACAGGCCCGCCGCGACGGCGGGCGCGAACGCGTCGCGCGTGATCCCCCACTCCTTGATCAGCACCGGAATCGCGAAGCCGATCAACTGGCTGTCGAAGCCGTCGAGCACGATCGCGAACGCGGCGAGCAGCACCGCGACGCGCTGCATCGCGGTGAACGGACCGTGGTCGAGCGTCGCGCCGATATCGAGCGCAAGCGGCGCACCGCCGTGCCGGGCGCTCATGCGAGCCTCCGGCGCGCGGCGCTCGATGCGGCGATGCGGCGGCGCGCCGCGGCGAAACAC > 272 BURPSPAST_AB0379 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 MFS_transporter,_metabolite:H+_symporter_(MHS)_family_protein EDO95207.1 11 MRGAPTRRAAQRIDHAAARCAAGSRASDGPQGRRVRLRTAAREPPACVTCRVHPTLDSNKGATAAERARQATRARADAVPPQPEPRMSDTRLSASAAAPRAANTTNHRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPIGSFLFGHFGDRIGRKSTLVASLLVMGVSTTAIGFVPGYDAIGALAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRGWFGMFPQLGPSIGFLASNGLFFALALTLSDEQFRSWGWRIPFLVSAALVAVGLYVRLKIAETPAFQAALDRHERVRVPLAALVAHHWRPTLLGALAMVVCYTLFYISTVFSLSYGVSTLHFSRQSFLGLLCFAVLFMALATPLAAAAADRFGRKPVLIAGAIAALLSGFTMAPLLGSGSMPLVALFLTIELFLMGMTFAPMGALLPELFPTNVRYTGAGVAYNLGGILGASIAPYIAQLLAARGGLAWVGAYVSAAAAISLVGVLLMRETRDAKLT beta_subgroup Burkholderia_pseudomallei_Pasteur_52237 Burkholderia_pseudomallei_Pasteur_52237 CH899755 369304..370875 DeShazer,D.,_Woods,D.E._and_Nierman,W.C. NA 0:1572 Annotation_was_added_to_the_scaffolds_in_October_2007. NA 05-OCT-2007 Burkholderia_pseudomallei_Pasteur_52237_scf_1041069936550,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_A8KX27_BURPS.gb Pseudomonas_RNA_homology_group_II 101065406 Unpublished NA CH899755 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1572 NA genomic_DNA NA Pasteur_52237 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 331978 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Annotation_of_Burkholderia_pseudomallei_Pasteur_52237 NA CH899755.1 TTATGTCAGCTTCGCATCGCGCGTTTCGCGCATCAGCAGCACGCCGACGAGGCTGATCGCCGCCGCGGCCGACACGTATGCGCCGACCCACGCAAGTCCGCCGCGCGCGGCAAGCAACTGCGCGATGTAAGGCGCGATCGACGCGCCCAGGATGCCGCCCAGGTTGTACGCGACCCCCGCGCCCGTGTAGCGCACGTTGGTCGGGAACAGTTCCGGCAGCAGCGCGCCCATCGGCGCGAACGTCATGCCCATCAGGAATAGCTCGATCGTCAGGAACAGCGCGACGAGCGGCATCGAGCCGCTGCCGAGCAGCGGCGCCATCGTGAAGCCGGACAGCAGCGCGGCGATGGCGCCCGCGATCAGCACCGGCTTGCGACCGAAGCGATCGGCGGCCGCGGCGGCGAGCGGCGTCGCGAGCGCCATGAACAGCACCGCGAAACACAGCAGGCCGAGGAAGCTCTGGCGCGAGAAATGCAGCGTCGAGACGCCGTACGACAGCGAGAACACCGTCGAGATATAGAACAGCGTATAGCAGACGACCATCGCGAGCGCGCCGAGCAGCGTCGGCCGCCAGTGGTGCGCAACGAGCGCCGCGAGCGGTACGCGCACGCGCTCGTGCCGGTCGAGCGCGGCCTGGAACGCGGGCGTTTCGGCGATCTTCAGGCGTACGTAGAGGCCGACCGCGACGAGCGCCGCGCTCACGAGAAACGGGATGCGCCAGCCCCACGAACGAAACTGCTCGTCGGACAGCGTGAGCGCAAGCGCGAAGAACAGGCCGTTCGACGCGAGAAAGCCGATCGACGGGCCGAGCTGCGGAAACATCCCGAACCAGCCGCGCTTGCCGGCGGGCGCGTGCTCGGTGGCGAGGAGCGCGGCGCCGCCCCATTCGCCGCCGAGGCCGATGCCCTGGCCGAACCGCAGCACGCAGAGCAGCACGGGCGCGAGCGCGCCGATCGCGTCGTAGCCGGGCACGAAGCCGATCGCGGTCGTCGACACGCCCATCACGAGCAGTGACGCGACGAGCGTCGACTTGCGGCCGATCCGGTCGCCGAAGTGGCCGAACAGGAACGAGCCGATCGGCCGCGCGATGAACGCGATGCCGAACGTGACGAACGCGGACAGCGCCTGCGCGGTGGCCGAGCCGTGCGGGAAGAACACGGGGCCGATCACGAGCGCGGCGGCTGTCGCGTACACGTAGAAATCGTAGAACTCGATCGCCGTGCCGATGAAGCTCGCGAACACGATGCGACGGTGGTTCGTCGTGTTCGCGGCGCGCGGCGCGGCGGCGGAAGCGGAAAGACGGGTGTCCGACATGCGGGGCTCCGGTTGTGGCGGCACGGCGTCCGCTCGAGCGCGCGTCGCTTGTCGCGCGCGCTCGGCGGCCGTTGCGCCTTTGTTCGAATCGAGAGTCGGGTGGACGCGGCACGTGACGCATGCCGGCGGTTCGCGCGCGGCGGTGCGAAGGCGCACGCGGCGCCCCTGCGGGCCGTCGCTTGCCCGCGAGCCGGCCGCGCATCGCGCGGCCGCGTGATCAATGCGTTGCGCGGCGCGCCGGGTAGGCGCACCGCGCAA > 273 BURPSS13_Q0031 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 citrate-proton_symporter EDS85035.1 11 MSTASPAIQQESKARTVFRVVSGNFLEMYDFMVYGYYASAIAKTYFPSGNAFASLMLSLSVFGAGFLMRPVGAIVLGAYIDHHGRRKGLILTLALMALGTLTVATIPGYATIGVLAPILVLLGRLLQGFSAGVELGGVSVYLSEIATKGNKGFYTSWQSGSQQVAVVFAAFVGVLLNRALPVEQMTSWGWRIPFLIGCLIVPFLFLIRRSLKETDEFLAKRRRPSMGEIMKSMLENWGVVLAGMGMVIMTTVSFYMITAYTPTFGKEVLHLSAIDALVVTVCVGLSNLVWLPLSGALSDRIGRRPVLIAFTALTILTAYPAMQWLVGSPSFLRLLGVELWLSFLYGSYNGAMVVALTEVMPADVRTAGFSLAYSLATTIGGFTPAISTLLIHETGNKAAPGLWLGLAAICGLIATLVLYRSPEARNQYRTT beta_subgroup Burkholderia_pseudomallei_S13 Burkholderia_pseudomallei_S13 CH899768 29975..31270 DeShazer,D.,_Woods,D.E._and_Nierman,W.C. NA 0:1296 Source_DNA_and_bacteria_available_from_David_DeShazer(david.deshazer@det.amedd.army.mil)._This_version_of_the_projectrepresents_9.48x_coverage_of_the_genome.Annotation_was_added_to_the_scaffolds_in_March_2008. NA 07-MAR-2008 Burkholderia_pseudomallei_S13_scf_1041068450772_genomic_scaffold,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_B1HCY6_BURPS.gb Pseudomonas_RNA_homology_group_II 101067259 Unpublished NA CH899768 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1296 NA genomic_DNA NA S13 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320374 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Annotation_of_Burkholderia_pseudomallei_S13 NA CH899768.1 ATGTCTACCGCGTCCCCCGCAATCCAGCAGGAATCCAAAGCCAGGACCGTGTTCCGCGTCGTCAGCGGCAACTTCCTGGAGATGTACGACTTCATGGTCTACGGCTACTACGCGTCCGCGATCGCCAAGACCTACTTCCCGAGCGGCAACGCGTTCGCCTCGCTGATGCTGTCGCTGTCGGTGTTCGGCGCGGGCTTTCTGATGCGTCCCGTCGGCGCGATCGTGCTCGGCGCGTACATCGACCATCACGGCCGCCGCAAGGGCCTCATCCTGACGCTCGCGTTGATGGCGCTCGGCACGCTGACCGTCGCGACGATTCCGGGCTACGCGACGATCGGCGTGCTCGCGCCGATTCTCGTGCTGCTCGGCCGCCTGCTGCAGGGTTTCTCGGCGGGCGTCGAGCTGGGCGGCGTATCGGTGTATCTGTCCGAGATCGCGACGAAGGGCAACAAGGGCTTCTATACGTCGTGGCAGTCGGGCAGCCAGCAGGTGGCCGTGGTGTTCGCCGCGTTCGTCGGCGTGCTGCTGAACCGCGCGCTGCCTGTCGAGCAAATGACGTCGTGGGGCTGGCGCATCCCGTTCCTGATCGGCTGCCTGATCGTGCCGTTCCTGTTCCTGATCCGCCGCTCGCTGAAGGAGACCGACGAGTTCCTCGCGAAGCGCCGCCGCCCGAGCATGGGCGAGATCATGAAGTCGATGCTCGAGAACTGGGGCGTGGTGCTGGCCGGCATGGGGATGGTCATCATGACGACCGTGTCGTTCTACATGATCACCGCGTACACGCCGACTTTCGGCAAGGAAGTGCTGCATCTGTCGGCGATCGACGCGCTCGTCGTGACCGTTTGCGTCGGGCTGTCGAACCTGGTCTGGCTGCCGCTGTCGGGCGCGCTGTCCGATCGGATCGGCCGCCGCCCGGTGCTGATCGCGTTCACCGCGCTCACGATCCTCACCGCGTATCCGGCGATGCAGTGGCTCGTCGGTTCGCCGTCGTTCCTGCGGCTGTTGGGCGTCGAGCTGTGGCTGTCGTTCCTGTACGGCTCGTACAACGGCGCGATGGTCGTCGCGCTGACCGAGGTGATGCCGGCCGACGTGCGCACCGCGGGCTTCTCGCTCGCTTACAGCCTCGCGACGACGATCGGCGGCTTCACGCCGGCGATCTCGACGCTGCTGATTCACGAGACCGGCAACAAGGCGGCGCCGGGCCTCTGGCTCGGCCTCGCCGCGATCTGCGGGCTGATCGCGACGCTCGTGCTGTACCGGTCGCCTGAAGCGCGCAATCAATACAGGACGACTTGA > 274 BURPS1655_J0261 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family EDU10207.1 11 MSDVQAASLAARIDRLPATATIWKLVWVLSIGGFFEVYDLFQMTYLPAGMVRDGIFHAGARGAFGISDQGALGAATFAGLFIGEMFVSRLADRFGRRALFTGSLLLYTAASVAMCVQSSALGVLVCRFVASCGVGAELITIGAFLSELVPKAVRGRAFAVCFAIGYLAMPVLAFVSWLWVPHAPLGLSGWRWVVLLGGSGAVAVWWLQSRLPESPRWLAERGRVAEADAILRRLEACVERETGRPLPPVPPPVDAPRHAIAPSRRASMWDADNRGRTAMLIVFNAFLSIGFFGFSQWLPTLLAAQGASVTKSLWYAFVIAFAYPVSPFAAAALADRIERKWLIVAAAFGVALFGTGFAMSAHPAAVIAFGILVTLCNTVLASNATAYQSEVFPTRIRSRALGFVHSIGRLTGIASSFVVALLIEHVGVPSVFVLIGASMAIVMLSIGMFGPRTNNRSLEDIVARASESGAATGARRAAPGEARRSIG beta_subgroup Burkholderia_pseudomallei_1655 Burkholderia_pseudomallei_1655 CH899716 247096..248559 DeShazer,D.,_Woods,D.E._and_Nierman,W.C. NA 0:1464 Annotation_was_added_to_the_scaffolds_in_April_2008. NA 22-APR-2008 Burkholderia_pseudomallei_1655_scf_1047336684787_genomic_scaffold,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_B2H573_BURPS.gb Pseudomonas_RNA_homology_group_II 101061130 Unpublished NA CH899716 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1464 NA genomic_DNA NA 1655 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 331109 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Annotation_of_Burkholderia_pseudomallei_1655 NA CH899716.1 ATGTCGGATGTCCAAGCAGCATCGCTCGCGGCGCGCATCGATCGCCTGCCCGCGACCGCAACGATCTGGAAGCTCGTCTGGGTGCTGAGCATCGGCGGCTTCTTCGAGGTCTACGACCTGTTCCAGATGACTTACCTGCCCGCCGGCATGGTTCGCGACGGCATCTTTCATGCGGGCGCGCGCGGCGCATTCGGCATATCGGATCAGGGCGCGCTCGGTGCGGCGACTTTCGCCGGCCTGTTCATCGGCGAGATGTTCGTATCGCGGCTCGCCGACCGCTTCGGGCGTCGCGCGTTGTTCACGGGCTCGCTGCTGCTCTACACGGCCGCGAGCGTCGCGATGTGCGTGCAGTCGAGCGCGCTCGGCGTTCTCGTGTGCCGCTTCGTCGCGAGTTGCGGCGTGGGCGCGGAGCTGATCACGATCGGCGCGTTCCTGTCCGAGCTCGTGCCGAAAGCGGTGCGCGGCCGCGCGTTCGCGGTGTGCTTCGCGATCGGCTATCTCGCGATGCCGGTGCTCGCGTTCGTGTCGTGGCTATGGGTGCCGCACGCGCCGCTCGGCCTGTCCGGCTGGCGCTGGGTGGTGCTGCTCGGCGGCAGCGGCGCGGTCGCGGTCTGGTGGTTGCAGTCGCGGCTGCCCGAATCCCCGCGCTGGCTCGCGGAGCGCGGCCGGGTGGCGGAGGCCGACGCGATCCTTCGCCGGCTCGAAGCGTGCGTCGAGCGCGAGACCGGCCGGCCGCTGCCGCCCGTGCCGCCGCCCGTCGACGCGCCGCGCCATGCGATCGCCCCGTCGCGCCGCGCATCGATGTGGGATGCCGACAATCGCGGCCGCACGGCGATGCTGATCGTGTTCAACGCCTTTCTGAGCATCGGCTTCTTCGGCTTCAGCCAATGGTTGCCGACGCTGCTCGCCGCGCAGGGCGCATCGGTGACGAAGAGCCTCTGGTATGCGTTCGTGATCGCGTTCGCGTATCCGGTGTCGCCGTTCGCCGCCGCGGCGCTCGCGGACCGGATCGAGCGCAAATGGCTGATCGTCGCGGCCGCGTTCGGCGTCGCGCTGTTCGGCACCGGCTTTGCGATGTCGGCGCATCCGGCCGCGGTGATCGCGTTCGGCATCCTCGTCACGCTGTGCAACACGGTGCTCGCGAGCAATGCGACCGCGTACCAGTCCGAAGTGTTTCCCACCCGCATCCGCAGCCGCGCGCTCGGCTTCGTTCATTCGATCGGGCGGCTCACCGGCATCGCGAGCAGCTTTGTCGTCGCGCTGCTGATCGAGCACGTCGGTGTGCCTTCGGTGTTCGTGCTGATCGGCGCGAGCATGGCGATCGTGATGCTCTCGATCGGCATGTTCGGGCCGCGGACGAACAACCGCTCGCTCGAGGATATCGTCGCTCGCGCAAGCGAGAGCGGTGCCGCAACCGGCGCGCGCCGCGCCGCGCCGGGCGAGGCGCGGCGGTCGATCGGCTGA > 275 BURPS1655_D0658 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family EDU12052.1 11 MPTPTPGTPRPPRTPQPVRAALAAFIGTTVEFYDYYTYATAAALVLGDVFFPSDNPFVSTMASFATFFVGFVARPLSGAVFGHLGDRIGRKKMLVLTMFLMGAATTGIGLLPGYATIGVWAPVLLVLLRILQGIAVGGEWGGAVLMASEHASAGRRTLFASFPQMGSPAGLILSLLAFRYVTSLDHARFVAWGWRLPFLASFVLLLIGVAVRLGVNESPEFERVRDSHAVARFPVAEVLRTAWYPIVLAAAATTIGSAGFFFTNTFMISYVTTYLGMSKSFILDCLFAVTLIQLLSQPVSALLAQRFGETRFLVCAALLSMLTPYPMFVLVRTHDPVAIVAGIAFAVVALSAVYAVIAGFMSAAFPTRVRYSGISIAYQLCALVAGGTTPLVGTMIAQRYRGEWLPLALFFSLLAFVSLVGIVGLGRYRRNLHAVAPRAWAVNP beta_subgroup Burkholderia_pseudomallei_1655 Burkholderia_pseudomallei_1655 CH899721 11819..13153 DeShazer,D.,_Woods,D.E._and_Nierman,W.C. NA 0:1335 Annotation_was_added_to_the_scaffolds_in_April_2008. NA 22-APR-2008 Burkholderia_pseudomallei_1655_scf_1047336684792_genomic_scaffold,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_B2HAH5_BURPS.gb Pseudomonas_RNA_homology_group_II 101061125 Unpublished NA CH899721 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1335 NA genomic_DNA NA 1655 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 331109 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Annotation_of_Burkholderia_pseudomallei_1655 NA CH899721.1 TCACGGATTCACCGCCCATGCCCGCGGCGCGACCGCGTGCAGATTCCGGCGATACCGCCCGAGCCCCACGATGCCGACGAGCGACACGAACGCCAGCAGTGAGAAGAACAGCGCGAGCGGCAGCCATTCTCCGCGATAGCGCTGCGCGATCATCGTGCCGACGAGCGGCGTGGTGCCGCCCGCGACTAGCGCGCATAGCTGGTAGGCGATCGAGATGCCCGAATAGCGCACGCGCGTGGGGAACGCGGCGGACATGAAGCCGGCGATCACCGCGTAGACGGCGGAGAGCGCGACGACCGCGAACGCGATGCCCGCGACGATCGCAACCGGATCGTGCGTGCGCACGAGCACGAACATCGGATACGGCGTGAGCATCGACAGCAGCGCCGCGCAGACGAGGAAACGCGTTTCGCCGAAACGTTGCGCGAGCAGCGCCGAGACGGGCTGCGACAGCAACTGGATGAGCGTGACGGCGAACAGGCAATCGAGGATGAACGATTTCGACATCCCGAGATACGTCGTCACGTACGAGATCATGAACGTGTTCGTGAAGAAGAAGCCGGCGGAGCCGATCGTCGTCGCGGCCGCGGCGAGCACGATCGGATACCACGCGGTGCGCAGCACTTCGGCGACCGGAAATCGGGCGACCGCGTGGCTGTCGCGCACGCGCTCGAACTCCGGCGATTCGTTGACGCCGAGCCGTACCGCGACGCCGATCAGCAACAGCACGAAGCTTGCGAGAAACGGCAGGCGCCAGCCCCACGCGACGAAGCGGGCGTGATCGAGCGACGTGACGTAGCGGAACGCGAGCAGCGAGAGGATCAGCCCGGCGGGGCTGCCCATTTGCGGAAACGACGCGAAGAGCGTCCTGCGCCCGGCGCTCGCGTGCTCGCTTGCCATCAGCACCGCGCCGCCCCATTCGCCGCCGACGGCGATGCCCTGGAGGATGCGCAGCAGCACGAGCAGGACGGGGGCCCAGACGCCGATCGTCGCGTAGCCGGGCAGCAGGCCGATGCCGGTTGTCGCGGCGCCCATCAGGAACATCGTTAGGACGAGCATTTTCTTGCGGCCGATCCGGTCGCCGAGATGGCCGAACACCGCACCGCTCAGCGGGCGCGCGACGAAGCCGACGAAGAACGTGGCGAACGATGCCATCGTGCTGACGAAAGGGTTGTCGCTCGGGAAGAACACGTCGCCGAGCACGAGCGCGGCGGCGGTGGCGTACGTGTAGTAATCGTAGAACTCGACGGTGGTGCCGATGAAGGCGGCCAGCGCGGCGCGCACGGGTTGGGGCGTGCGGGGAGGGCGGGGCGTGCCGGGCGTCGGGGTTGGCAT > 276 BUC_1098 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 MFS_transporter EEC36840.1 11 MSARHGGAPLALDIGATLDHGPFTAMQRVAVLLAAFAIVLDGFDSQLIGFAIPVLIKEWGITRDAFAPAVAAGLFGMGVGSACAGLFADRFGRRWAIIGSVFVFGAATCAIGFAPNVATIAALRFVAGLGIGGALPTATTMTAEYTPARRRTMMVTATIVCVPAGGMLAGLFAHEVLPAYGWRGLFWLGGALPLALGLLLVRALPESPRYLARNPARWRELGALLARMGRPVADGTAFTDLAEARAHEGQRRGVRALFSAAYARDTIALWCAFCMCLLAVYSAFSWLPTMLTSQGLSVSVAGSGLTAYNLGGVLGALGCALAIGRFGSRWPLAFCCAGGAASAAWLLGVDAGSHAGWLIVGLAAHGFFVNAVQSTMYALCTFIYPTPVRATGTAGAVAFGRVGAILSAFAGAYVISAGGANAYLAMLAAAMAVVLVALLALRRHIPRLRRGGLPAADELARTAP beta_subgroup Burkholderia_pseudomallei_576 Burkholderia_pseudomallei_576 ACCE01000002 429695..431089 Harkins,D.M.,_Brinkac,L.M.,_Dunbar,J.,_Munk,A.C.,_Brettin,T.S.,_Tapia,R.,_Green,L.,_Bruce,D._and_Detter,C. NA 0:1395 The_Burkholderia_pseudomallei_576_isolate_was_obtained_from_theWellcome_Trust_Unit_in_Bangkok,_Thailand._The_strain_was_originallyisolated_from_a_49_year_old_woman_suffering_from_melioidosis_in1989._In_the_murine_model_of_disease,_strain_576_is_highly_virulentand_appears_to_have_atypcial_LPS._For_more_information_about_thisstrain_contact_Richard_Titball_(rtitball@mail.dstl.gov.uk)_at_theThe_Defence_Science_and_Technology_Laboratory_or_John_Dunbar(dunbar@lanl.gov)_at_Los_Alamos_National_Laboratory._The_authorswish_to_acknowledge_the_Intelligence_Technology_Innovation_Centerfor_funding_the_sequencing_and_the_NIH/NIAID_for_funding_theannotation_at_Pathema_Bioinformatics_Resource_Center.The_NIAID_funded_Bioinformatics_Resource_Center_PathoSystemsResource_Integration_Center_(PATRIC;_http://patricbrc.vbi.vt.edu/)is_responsible_for_annotation_updates_of_this_record.Genome_Coverage:_11.9xAnnotation_was_updated_on_the_contigs_in_February_2010. NA 04-FEB-2010 Burkholderia_pseudomallei_576_BUC.Contig188,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_B7CIL0_BURPS.gb Pseudomonas_RNA_homology_group_II 217396670 Submitted_(12-DEC-2008)_Los_Alamos_National_Laboratory,_P.O._Box_1663,_Los_Alamos,_NM_87545,_USA NA ACCE01000002 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1395 NA genomic_DNA NA 576 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 557724 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA ACCE01000002.1 TCAGGGCGCGGTGCGCGCGAGCTCGTCGGCTGCCGGCAGCCCGCCGCGGCGCAGCCGCGGAATGTGCCGGCGCAGCGCGAGCAACGCGACGAGCACGACCGCCATCGCGGCGGCGAGCATCGCCAGGTACGCGTTCGCACCGCCCGCCGAGATCACGTACGCGCCCGCGAACGCGCTCAGGATCGCGCCGACGCGGCCGAACGCGACGGCGCCGGCGGTGCCCGTCGCGCGCACGGGCGTCGGATAGATGAACGTGCAGAGCGCGTACATCGTCGACTGCACCGCGTTCACGAAGAAGCCGTGCGCGGCGAGGCCGACGATCAGCCAGCCGGCGTGGCTGCCGGCATCGACGCCGAGCAGCCACGCGGCGCTCGCCGCGCCGCCCGCACAGCAGAACGCGAGCGGCCAGCGCGAACCGAAACGGCCGATCGCGAGCGCGCAGCCGAGCGCGCCCAGCACGCCGCCGAGGTTGTATGCGGTGAGCCCGGAACCCGCGACCGACACGCTCAGGCCTTGCGACGTCAGCATCGTCGGCAGCCAGCTGAATGCGCTGTAGACGGCGAGCAGGCACATGCAGAATGCGCACCACAACGCGATCGTGTCGCGCGCGTAGGCCGCCGAGAACAGCGCACGCACACCGCGCCGCTGCCCTTCGTGCGCACGCGCCTCGGCAAGATCGGTGAAGGCGGTGCCGTCGGCGACGGGCCGGCCCATGCGCGCGAGCAGCGCGCCGAGCTCGCGCCAGCGCGCGGGATTGCGCGCGAGATAGCGCGGCGATTCGGGCAGCGCGCGCACGAGCAGCAAACCGAGCGCCAGCGGCAGCGCACCGCCGAGCCAGAACAAGCCGCGCCAGCCGTACGCGGGCAGCACCTCGTGCGCGAACAGGCCCGCGAGCATCCCGCCCGCCGGCACGCAGACGATCGTCGCCGTCACCATCATCGTGCGGCGGCGCGCGGGCGTGTACTCGGCCGTCATCGTCGTCGCGGTAGGCAGCGCGCCGCCGATCCCGAGGCCCGCGACGAAGCGCAGCGCGGCGATGGTCGCCACGTTCGGCGCGAAGCCGATCGCGCAGGTAGCCGCGCCGAACACGAACACGCTGCCGATGATCGCCCAGCGCCGGCCGAAGCGGTCCGCGAACAGGCCCGCGCACGCGCTGCCGACGCCCATCCCGAACAGGCCCGCCGCGACGGCGGGCGCGAACGCGTCGCGCGTGATCCCCCACTCCTTGATCAGCACCGGAATCGCGAAGCCGATCAACTGGCTGTCGAAGCCGTCGAGCACGATCGCGAACGCGGCGAGCAGCACCGCGACGCGCTGCATCGCGGTGAACGGACCGTGGTCGAGCGTCGCGCCGATATCGAGCGCAAGCGGCGCACCGCCGTGCCGGGCGCTCAT > 277 BUC_3296 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 MFS_transporter,_metabolite:H+_symporter_(MHS)_family_protein EEC35935.1 11 MSDTRLSASAAAPRAANTTNHRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPIGSFLFGHFGDRIGRKSTLVASLLVMGVSTTAIGFVPGYDAIGALAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRGWFGMFPQLGPSIGFLASNGLFFALALTLSDEQFRSWGWRIPFLVSAALVAVGLYVRLKIAETPAFQAALDRHERVRVPLAALVAHHWRPTLLGALAMVVCYTLFYISTVFSLSYGVSTLHFSRQSFLGLLCFAVLFMALATPLAAAAADRFGRKPVLIAGAIAALLSGFTMAPLLGSGSMPLVALFLTIELFLMGMTFAPMGALLPELFPTNVRYTGAGVAYNLGGILGASIAPYIAQLLAARGGLAWVGAYVSAAAAISLVGVLLMRETRDAKLT beta_subgroup Burkholderia_pseudomallei_576 Burkholderia_pseudomallei_576 ACCE01000003 411848..413161 Harkins,D.M.,_Brinkac,L.M.,_Dunbar,J.,_Munk,A.C.,_Brettin,T.S.,_Tapia,R.,_Green,L.,_Bruce,D._and_Detter,C. NA 0:1314 The_Burkholderia_pseudomallei_576_isolate_was_obtained_from_theWellcome_Trust_Unit_in_Bangkok,_Thailand._The_strain_was_originallyisolated_from_a_49_year_old_woman_suffering_from_melioidosis_in1989._In_the_murine_model_of_disease,_strain_576_is_highly_virulentand_appears_to_have_atypcial_LPS._For_more_information_about_thisstrain_contact_Richard_Titball_(rtitball@mail.dstl.gov.uk)_at_theThe_Defence_Science_and_Technology_Laboratory_or_John_Dunbar(dunbar@lanl.gov)_at_Los_Alamos_National_Laboratory._The_authorswish_to_acknowledge_the_Intelligence_Technology_Innovation_Centerfor_funding_the_sequencing_and_the_NIH/NIAID_for_funding_theannotation_at_Pathema_Bioinformatics_Resource_Center.The_NIAID_funded_Bioinformatics_Resource_Center_PathoSystemsResource_Integration_Center_(PATRIC;_http://patricbrc.vbi.vt.edu/)is_responsible_for_annotation_updates_of_this_record.Genome_Coverage:_11.9xAnnotation_was_updated_on_the_contigs_in_February_2010. NA 04-FEB-2010 Burkholderia_pseudomallei_576_BUC.Contig186,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_B7CKD6_BURPS.gb Pseudomonas_RNA_homology_group_II 217395742 Submitted_(12-DEC-2008)_Los_Alamos_National_Laboratory,_P.O._Box_1663,_Los_Alamos,_NM_87545,_USA NA ACCE01000003 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1314 NA genomic_DNA NA 576 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 557724 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA ACCE01000003.1 ATGTCGGACACCCGTCTTTCCGCTTCCGCCGCCGCGCCGCGCGCCGCGAACACGACGAACCACCGTCGCATCGTGTTCGCGAGCTTCATCGGCACGGCGATCGAGTTCTACGATTTCTACGTGTACGCGACAGCCGCCGCGCTCGTGATCGGCCCCGTGTTCTTCCCGCACGGCTCGGCCACCGCGCAGGCGCTGTCCGCGTTCGTCACGTTCGGCATCGCGTTCATCGCGCGGCCGATCGGCTCGTTCCTGTTCGGCCACTTCGGCGACCGGATCGGCCGCAAGTCGACGCTCGTCGCGTCACTGCTCGTGATGGGCGTGTCGACGACCGCGATCGGCTTCGTGCCCGGCTACGACGCGATCGGCGCGCTCGCGCCCGTGCTGCTCTGCGTGCTGCGGTTCGGCCAGGGCATCGGCCTCGGCGGCGAATGGGGCGGCGCCGCGCTCCTCGCCACCGAGCACGCGCCCGCCGGCAAGCGCGGCTGGTTCGGGATGTTTCCGCAGCTCGGCCCGTCGATCGGCTTTCTCGCGTCGAACGGCCTGTTCTTCGCGCTTGCGCTCACGCTGTCCGACGAGCAGTTTCGTTCGTGGGGCTGGCGCATCCCGTTTCTCGTGAGCGCGGCGCTCGTCGCGGTCGGCCTCTACGTACGCCTGAAGATCGCCGAAACGCCCGCGTTCCAGGCCGCGCTCGACCGGCACGAGCGCGTGCGCGTACCGCTCGCGGCGCTCGTTGCGCACCACTGGCGGCCGACGCTGCTCGGCGCGCTCGCGATGGTCGTCTGCTATACGCTGTTCTATATCTCGACGGTGTTCTCGCTGTCGTACGGCGTCTCGACGCTGCATTTCTCGCGCCAGAGCTTCCTCGGCCTGCTGTGTTTCGCGGTGCTGTTCATGGCGCTCGCGACGCCGCTCGCCGCCGCGGCCGCCGATCGCTTCGGTCGCAAGCCGGTGCTGATCGCGGGCGCCATCGCCGCGCTGCTGTCCGGCTTCACGATGGCGCCGCTGCTCGGCAGCGGCTCGATGCCGCTCGTCGCGCTGTTCCTGACGATCGAGCTATTCCTGATGGGCATGACGTTCGCGCCGATGGGCGCGCTGCTGCCGGAACTGTTCCCGACCAACGTGCGCTACACGGGCGCGGGGGTCGCGTACAACCTGGGCGGCATCCTGGGCGCGTCGATCGCGCCTTACATCGCGCAGTTGCTTGCCGCGCGCGGCGGACTTGCGTGGGTCGGCGCATACGTGTCGGCCGCGGCGGCGATCAGCCTCGTCGGCGTGCTGCTGATGCGCGAAACGCGCGATGCGAAGCTGACATAA > 278 BUC_4494 NA conserved_hypothetical_protein EEC34011.1 11 MNGRRQSAARGFVAIAACIGRRTAAGSCRPTPIEAPRAAQASAAVALPDDIFDEETTTCTKTT beta_subgroup Burkholderia_pseudomallei_576 Burkholderia_pseudomallei_576 ACCE01000006 156697..157332 Harkins,D.M.,_Brinkac,L.M.,_Dunbar,J.,_Munk,A.C.,_Brettin,T.S.,_Tapia,R.,_Green,L.,_Bruce,D._and_Detter,C. NA 617:>636 The_Burkholderia_pseudomallei_576_isolate_was_obtained_from_theWellcome_Trust_Unit_in_Bangkok,_Thailand._The_strain_was_originallyisolated_from_a_49_year_old_woman_suffering_from_melioidosis_in1989._In_the_murine_model_of_disease,_strain_576_is_highly_virulentand_appears_to_have_atypcial_LPS._For_more_information_about_thisstrain_contact_Richard_Titball_(rtitball@mail.dstl.gov.uk)_at_theThe_Defence_Science_and_Technology_Laboratory_or_John_Dunbar(dunbar@lanl.gov)_at_Los_Alamos_National_Laboratory._The_authorswish_to_acknowledge_the_Intelligence_Technology_Innovation_Centerfor_funding_the_sequencing_and_the_NIH/NIAID_for_funding_theannotation_at_Pathema_Bioinformatics_Resource_Center.The_NIAID_funded_Bioinformatics_Resource_Center_PathoSystemsResource_Integration_Center_(PATRIC;_http://patricbrc.vbi.vt.edu/)is_responsible_for_annotation_updates_of_this_record.Genome_Coverage:_11.9xAnnotation_was_updated_on_the_contigs_in_February_2010. NA 04-FEB-2010 Burkholderia_pseudomallei_576_BUC.Contig183,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_B7CSG1_BURPS.gb Pseudomonas_RNA_homology_group_II 217393677 Submitted_(12-DEC-2008)_Los_Alamos_National_Laboratory,_P.O._Box_1663,_Los_Alamos,_NM_87545,_USA NA ACCE01000006 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 636 NA genomic_DNA NA 576 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 557724 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA ACCE01000006.1 TTAGTTGGGCACGCGCCAGCCCCAGCTTTCCAGCGCGTCCTTCGCGAGCGTGTTCGACAGCAGCGCCGCGAACCCCGAGCCCATCAGCGCCGCGCCGCCCTGTGTCGCGAGCTGCCAGCTCGCGCGAAAGCCCCGGCGCGCGGCGCCGCCGTGCTCGACGAGCGTCGACGTCGCCGCGCCGAACTCGCCGCCTTGCGAAAAGCCCTGCATCAGCCGCGCGCACACGACGATCACCGGCGCGAGCACGCCGATCTGCGCGTAGGTCGGCGCGAGCGCGATCATGCCGGTGCCGAGCGCCATCAGCAGGATCGTCAGGTTCAGCGCCGCCTTGCGGCCGCGGCGGTCCGCGTAGACGCCGAGCACGATGCTGCCGAGCGGACGCGTGAAGAAGCCCGCGGCGAACGTCGCGACCGACAGCAGCAGCGACGTCGTCGCGTCGTGCGACGGGAAATACAGCTTGCCGATGATCACCGCGAAAAAACCGTAGACGGTGAAATCGAAGAATTCGAGCCAGTTGCCGATCACCGCGGCCGCGATCGCACCGCCGCGCGCGGTGCGCAAGCCCGCCGCCGATACGGCGTCGGCCGGGGCGACGCCCGCGCCGTCGGCGGGCATCGTCAGGTTGTCTTCGTGCAT > 279 BUC_4194 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 MFS_transporter,_metabolite:H+_symporter_(MHS)_family_protein EEC34030.1 11 MAPHRAAFDKTPGDAMEPTFTETGARASEPHATTLAGRAASSGDKLQRLKSIFSASAGNLIEWYDWYVYSAFALYFAHSFFPAGNQTAQLLNTAAVFAVGFLARPVGGWLMGIYADRYGRRPALLVSVVLMCVGSLIIALCPGYDVIGTAAPVLLVVARLLQGLSVGGEYGTSATYLSEVATARDRGFYSSFQYVTLVAGQLVALALLIVLQQFVLTTQQLESWGWRIPFFIGAACALAAMRLRSSMEETGEFKRTLNARDKRGTLAELSKHPRAVLTVVGLTMGGTIAFYTYSIYMQKFLVNTVGMSKHDATLVSAASLALFAILQPVVGSISDRIGRRPVLIAFGVLGTLFTVPIMTAISRTHDVWTAFFLNMAALVIVSGYTSINAVVKAELFPAKIRALGVGFPYALTVSIFGGTAEYLALWLKQAGHESLFYWYVTAAIFCSLLVYVCMRDTGKHSLIKD beta_subgroup Burkholderia_pseudomallei_576 Burkholderia_pseudomallei_576 ACCE01000006 448747..450144 Harkins,D.M.,_Brinkac,L.M.,_Dunbar,J.,_Munk,A.C.,_Brettin,T.S.,_Tapia,R.,_Green,L.,_Bruce,D._and_Detter,C. NA 0:1398 The_Burkholderia_pseudomallei_576_isolate_was_obtained_from_theWellcome_Trust_Unit_in_Bangkok,_Thailand._The_strain_was_originallyisolated_from_a_49_year_old_woman_suffering_from_melioidosis_in1989._In_the_murine_model_of_disease,_strain_576_is_highly_virulentand_appears_to_have_atypcial_LPS._For_more_information_about_thisstrain_contact_Richard_Titball_(rtitball@mail.dstl.gov.uk)_at_theThe_Defence_Science_and_Technology_Laboratory_or_John_Dunbar(dunbar@lanl.gov)_at_Los_Alamos_National_Laboratory._The_authorswish_to_acknowledge_the_Intelligence_Technology_Innovation_Centerfor_funding_the_sequencing_and_the_NIH/NIAID_for_funding_theannotation_at_Pathema_Bioinformatics_Resource_Center.The_NIAID_funded_Bioinformatics_Resource_Center_PathoSystemsResource_Integration_Center_(PATRIC;_http://patricbrc.vbi.vt.edu/)is_responsible_for_annotation_updates_of_this_record.Genome_Coverage:_11.9xAnnotation_was_updated_on_the_contigs_in_February_2010. NA 04-FEB-2010 Burkholderia_pseudomallei_576_BUC.Contig183,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_B7CTB2_BURPS.gb Pseudomonas_RNA_homology_group_II 217393677 Submitted_(12-DEC-2008)_Los_Alamos_National_Laboratory,_P.O._Box_1663,_Los_Alamos,_NM_87545,_USA NA ACCE01000006 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1398 NA genomic_DNA NA 576 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 557724 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA ACCE01000006.1 TCAATCCTTGATCAGCGAGTGCTTCCCGGTATCCCGCATGCATACGTAGACGAGCAACGAACAGAATATGGCGGCTGTCACGTACCAATAGAACAGCGATTCGTGGCCAGCCTGCTTGAGCCAGAGCGCCAGATACTCCGCCGTGCCGCCGAAGATCGACACGGTGAGTGCATACGGAAAGCCGACGCCCAGTGCACGGATTTTCGCAGGGAACAATTCCGCCTTCACGACTGCGTTGATCGAGGTATACCCCGACACGATCACCAGCGCCGCCATGTTGAGGAAGAACGCGGTCCAAACGTCATGAGTCCGGCTGATGGCCGTCATGATCGGCACGGTGAACAACGTGCCGAGCACGCCGAACGCGATCAGCACGGGGCGACGGCCGATGCGATCGGAGATCGAGCCGACGACCGGCTGCAAGATCGCGAACAGGGCGAGCGACGCGGCGGATACCAGGGTCGCATCATGTTTGCTCATGCCGACGGTGTTCACGAGGAATTTCTGCATGTAGATCGAGTAGGTGTAGAACGCGATCGTGCCGCCCATCGTCAGGCCGACCACGGTCAGGACCGCGCGCGGATGCTTGCTCAGTTCCGCGAGCGTGCCGCGCTTGTCCCGGGCGTTTAAGGTCCGCTTGAATTCGCCCGTTTCCTCCATCGACGAGCGCAGGCGCATGGCGGCCAGCGCGCACGCCGCGCCGATGAAGAACGGAATTCTCCACCCCCAGCTTTCGAGCTGCTGCGTCGTCAGCACGAATTGCTGCAGGACGATCAGCAGCGCCAGCGCGACGAGTTGGCCGGCAACCAGCGTGACGTACTGAAAGCTGGAGTAGAAGCCGCGATCGCGGGCGGTCGCGACTTCGCTGAGATAGGTCGCCGACGTGCCGTATTCGCCCCCGACGCTCAAGCCCTGCAGCAGGCGGGCGACGACGAGCAGGACAGGCGCGGCCGTGCCGATCACGTCATACCCCGGGCAGAGGGCGATGATGAGCGAGCCCACGCACATCAGCACGACCGATACGAGCAAGGCCGGACGGCGGCCGTAGCGATCCGCGTAGATCCCCATCAGCCAGCCGCCGACGGGGCGCGCCAGAAAGCCCACCGCGAAGACGGCGGCCGTGTTGAGCAGTTGCGCGGTCTGGTTGCCGGCCGGAAAAAACGAATGCGCGAAGTACAGCGCAAACGCCGAATACACGTACCAGTCGTACCACTCGATCAGATTGCCCGCCGATGCGGAGAAGATCGACTTCAGGCGTTGCAGCTTATCGCCGGACGATGCGGCTCGGCCGGCAAGCGTTGTTGCGTGGGGCTCGCTCGCCCGCGCGCCGGTTTCGGTAAAGGTCGGCTCCATGGCGTCTCCTGGTGTTTTGTCGAATGCCGCTCGATGCGGTGCCAT > 280 BUH_1060 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 putative_200_kDa_antigen_p200 EEH29412.1 11 MGGSHRGISSLLSCAWPADSAGARPMSRGPSPGPRRTRAIARCTFYRRPLTISQISTYYSRHNLY beta_subgroup Burkholderia_pseudomallei_Pakistan_9 Burkholderia_pseudomallei_Pakistan_9 ACKA01000016 29597..30910 Harkins,D.M.,_Brinkac,L.M.,_Rogers,Y.C.,_Detter,J.C.,_Munk,A.C.,_Bruce,D.C.,_Sims,D.R._and_Brettin,T.S. NA 1299:>1314 The_authors_are_from_Los_Alamos_National_Laboratory,_J._CraigVenter_Institute_and_Joint_Genome_Institute._Burkholderiapseudomallei_Pakistan_9_was_isolated_from_a_human_host_in_Pakistanduring_1988._For_more_information_about_this_strain_contact_ThomasBrettin_(brettin@lanl.gov)_at_Los_Alamos_National_Laboratory.Source_of_strain_was_Dr._Ty_Pitt_of_the_Public_Health_LaboratoryService,_UK._The_authors_wish_to_acknowledge_the_IntelligenceTechnology_Innovation_Center_for_funding_the_sequencing_and_theNIH/NIAID_for_funding_the_annotation_at_Pathema_BioinformaticsResource_Center.The_NIAID_funded_Bioinformatics_Resource_Center_PathoSystemsResource_Integration_Center_(PATRIC;_http://patricbrc.vbi.vt.edu/)is_responsible_for_annotation_updates_of_this_record.Genome_coverage:_9XSequencing_Technology:_ABI. NA 11-JUN-2010 Burkholderia_pseudomallei_Pakistan_9_BUH.Contig266,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_C0XZN2_BURPS.gb Pseudomonas_RNA_homology_group_II 225933406 Submitted_(30-MAR-2009)_Los_Alamos_National_Laboratory,_P.O._Box_1663,_Los_Alamos,_NM_87545,_USA NA ACKA01000016 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1314 NA genomic_DNA NA Pakistan_9 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 595498 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA ACKA01000016.1 TCAGCGCGCCTCCAGCGCTTCGCGGGCCGAAGCGCCTCGCGCGGCGCGGCGCGCGTCGAGCGCGACGACGCTCACGAGCGAGAGCCCCGCGAGACACGTATAGAACAGCGCGAGCGGCAGCCATGCGCCCGCGTAGCGATGCGCGAGCCACGTGCCGACGAGCGGCGTGAGGCCGCCCGCGAGCGCGCCGCACACCTGGTAGGACAGCGAGATCGCCGAATAGCGGATGCGCGCCGCGAACACGCCGGAGACGAAACCCGCGATCACCGAATAGAAGCCCGCCATGCAGACCACCGCGAGCGCGATGCCGGCGACGATCGCGCCGGGCCGCCCGCTCGTCACGAGCATGAACATCGGATACGGCGAAGCCATCGCGGCGACGGCCGCGAGCTTCAGGAAACGCGCGCCGCCGAGCTTTTCGGCCAGCCACGCGGCGGCGGGCTGCGCGACGAACTGGATGATCGCGACCGCGAACAGGCAATCGAGGATCGTCGCGCGCGGGATGCCGAGCTGCTGCGTCGTGTACGCGATCATGAACGTGTTCGTGAAATACACGCCGGCGATGCCGATCGTGTTCGCGCCGATGCACAGCAGCACGAGCCCCGACGCGGAGCGCAACACGTCGGCGATCGGCAGCTTCGCGGTGGCGCGCGTGCGCTTCACCGCCTCGAATTCCGGCGATTCGTTCACGCCCAGCCGGATCGCGAGACCGACGATCAGCAGCACCGCGCTCGCGAGAAACGGCAGGCGCCAGCCCCATGCGAGAAAGTCCGCCTTCTCGAGCGACGTGGCCGCGCGAAACGCGACGAGCGACAGGATCAGCCCGGCCGGGCTGCCCAACTGCGCGAACGAAGCGAAGAACGTGCGCCGCCCGTCGGGCGCGTGCTCGCCCGCCATCAGCACCGCGCCGCCCCACTCGCCGCCCACCGCGACGCCCTGCACGATCCGCAGCAGCACGAGCAGCACCGGCGCGAGCGCACCGATCGACGCATGGCTCGGCAACAGGCCGATGCACACGGTCGCCGCGCCCATCATCGCGAGCGTCGTCATCAGCGCCTTCTTGCGGCCGATCCGGTCGCCGAGATGGCCGAACACGACGCCGCCGAGCGGCCGCGCGAAAAAGCCGACCGCGAACGTGCCGAACGAAGCCATCGTGCTGACGAACGGGTCGCCCGACGGAAAGTACAACTCGCCGAACACGAGCGCGGCGGCGGTCGCGTAAATGTAGAAGTCGTACCACTCGATCATCGTGCCGACGAACGCGGCGGCAGCGGCGCGCGCCGGCTGGCGCGCGCACGGTTGGGGGGCAGTCAT > 281 BUH_5756 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EEH24622.1 11 MSTLDLDAPISTPIRTASDVSRLINASGARANHARVIVLLALGGVFLDAYDLTTLSYGIEDVTREFGLTPALSGLVSASIMIGTILGSLLGGWFTDKVGRYRVFMADMLCFVVAAIVAGLAPNVEVLIAARFVMGLGVGIDLPVAMAFLAEFSKFGGRGNKASRLAAWCPMWYAASSVCFLIVFGLYFALPAEHARWLWRASLIFGAAPALAIIAVRGRYMNESPLWAANQGKLRDAARILRESYGIRAHAADDTPRAAPSQPPVSFRVLFRQPYLPRTLVASAMNLCIPFEYTAIAFFLPTILTQFLGAGVFETIAATLALNVLFALTGGLLGMRLAYRLPSRRVAIAGFALQAAALVTLALLGHPQTALGIGAAVLMLGLWLFAEGFGPGAQMMIYPALSYPASIRGTGLGFGRALTGIGSAFALFVLPILNARLGAGMFWIVAIAAFVPIVFLAAIRFEPTARDVDVDIDAGSRAQGDRARVRAAA beta_subgroup Burkholderia_pseudomallei_Pakistan_9 Burkholderia_pseudomallei_Pakistan_9 ACKA01000055 30006..31475 Harkins,D.M.,_Brinkac,L.M.,_Rogers,Y.C.,_Detter,J.C.,_Munk,A.C.,_Bruce,D.C.,_Sims,D.R._and_Brettin,T.S. NA 0:1470 The_authors_are_from_Los_Alamos_National_Laboratory,_J._CraigVenter_Institute_and_Joint_Genome_Institute._Burkholderiapseudomallei_Pakistan_9_was_isolated_from_a_human_host_in_Pakistanduring_1988._For_more_information_about_this_strain_contact_ThomasBrettin_(brettin@lanl.gov)_at_Los_Alamos_National_Laboratory.Source_of_strain_was_Dr._Ty_Pitt_of_the_Public_Health_LaboratoryService,_UK._The_authors_wish_to_acknowledge_the_IntelligenceTechnology_Innovation_Center_for_funding_the_sequencing_and_theNIH/NIAID_for_funding_the_annotation_at_Pathema_BioinformaticsResource_Center.The_NIAID_funded_Bioinformatics_Resource_Center_PathoSystemsResource_Integration_Center_(PATRIC;_http://patricbrc.vbi.vt.edu/)is_responsible_for_annotation_updates_of_this_record.Genome_coverage:_9XSequencing_Technology:_ABI. NA 31-MAR-2009 Burkholderia_pseudomallei_Pakistan_9_BUH.Contig226,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_C0YDW7_BURPS.gb Pseudomonas_RNA_homology_group_II 225928559 Submitted_(30-MAR-2009)_Los_Alamos_National_Laboratory,_P.O._Box_1663,_Los_Alamos,_NM_87545,_USA NA ACKA01000055 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1470 NA genomic_DNA NA Pakistan_9 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 595498 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA ACKA01000055.1 GTGAGCACACTCGATCTCGACGCGCCGATCTCGACGCCGATTCGCACCGCGAGCGACGTTTCGCGCCTCATCAACGCATCGGGCGCGCGCGCGAACCACGCGCGCGTGATCGTCCTGCTCGCGCTCGGCGGCGTGTTCCTCGATGCGTACGATCTGACCACGCTGTCGTACGGCATCGAGGACGTGACCCGCGAGTTCGGCCTGACGCCGGCGCTGAGCGGGCTCGTCAGCGCGTCGATCATGATCGGCACGATCCTCGGCAGCCTGCTCGGCGGCTGGTTCACCGACAAGGTCGGCCGCTACCGCGTGTTCATGGCCGACATGCTCTGCTTCGTCGTCGCCGCGATCGTGGCCGGACTCGCGCCGAACGTAGAGGTGCTGATCGCCGCGCGCTTCGTGATGGGGCTCGGCGTCGGCATCGATCTGCCGGTCGCGATGGCGTTCCTGGCCGAGTTCTCGAAATTCGGCGGGCGCGGCAACAAGGCGTCGCGGCTCGCCGCGTGGTGCCCGATGTGGTACGCGGCGTCGTCCGTGTGCTTCCTGATCGTGTTCGGGCTGTATTTCGCGCTGCCCGCCGAGCACGCGCGCTGGCTGTGGCGCGCGTCGCTGATCTTCGGCGCGGCGCCGGCGCTCGCGATCATCGCGGTACGCGGCCGCTACATGAACGAATCGCCGCTGTGGGCCGCGAATCAAGGCAAGCTGCGCGACGCCGCGCGCATCCTGCGCGAGTCGTACGGGATCCGCGCGCATGCGGCCGACGACACGCCGCGCGCGGCACCGTCGCAGCCGCCCGTCAGTTTTCGCGTGCTGTTCAGGCAGCCGTACCTGCCGCGCACGCTCGTCGCGAGCGCGATGAATCTGTGCATCCCGTTCGAATACACGGCGATCGCGTTCTTCCTGCCGACGATCCTGACGCAGTTCCTCGGCGCGGGCGTGTTCGAGACGATCGCCGCGACGCTCGCGCTCAACGTGCTGTTCGCGCTCACGGGCGGGTTGCTCGGCATGCGCCTCGCGTACCGGCTGCCGTCGCGGCGCGTCGCGATCGCCGGCTTCGCGTTGCAGGCCGCGGCGCTCGTCACGCTCGCGCTGCTCGGCCATCCGCAGACCGCGCTCGGCATCGGCGCCGCGGTGCTGATGCTCGGCCTGTGGCTGTTCGCCGAAGGCTTCGGCCCCGGCGCGCAGATGATGATCTATCCGGCGCTGTCGTATCCGGCGTCGATTCGCGGCACGGGGCTCGGCTTCGGGCGCGCGCTGACGGGCATCGGCAGCGCGTTCGCGCTGTTCGTGCTGCCGATCCTCAACGCGCGCCTCGGCGCCGGCATGTTCTGGATCGTGGCGATCGCGGCATTCGTGCCGATCGTGTTTCTCGCGGCGATTCGCTTCGAGCCGACCGCGCGCGATGTCGATGTCGATATCGATGCCGGCTCGCGTGCGCAAGGCGATCGAGCGCGCGTGCGCGCCGCCGCGTAG > 282 GBP346_A1174 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family YP_002895895.1 11 MTAPQPCARQPARAAAAAFVGTMIEWYDFYIYATAAALVFGELYFPSGDPFVSTMASFGTFAVGFFARPLGGVVFGHLGDRIGRKKALMTTLAMMGAATVCIGLLPSHASIGALAPVLLVLLRIVQGVAVGGEWGGAVLMAGEHAPEGRRTFFASFAQLGSPAGLILSLVAFRAATSLEKADFLAWGWRLPFLASAVLLIVGLAIRLGVNESPEFEAVKRTRATAKLPIADVLRSASGLVLLCIGANTIGIAGVYFTNTFMIAYTTQQLGIPRATILDCLFAVAIIQFVAQPAAAWLAEKLGGARFLKLAAVAAMASPYPMFMLVTSGRPGAIVAGIALAVVCMAGFYSVIAGFVSGVFAARIRYSAISLSYQVCGALAGGLTPLVGTWLAHRYAGAWLPLALFYTCLAGLSLVSVVALDARRAARGASGREALEAR beta_subgroup Burkholderia_pseudomallei_MSHR346 Burkholderia_pseudomallei_MSHR346 NC_012695 1128417..1129730 NA NA 0:1314 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001408.The_Burkholderia_pseudomallei_MSHR346_strain_was_isolated_fromsputum_of_a_melioidosis_patient_who_was_admitted_to_the_RoyalDarwin_Hospital,_Northern_Territory,_Australia_in_1995._Theauthors_are_from_Los_Alamos_National_Laboratory,_J._Craig_VenterInstitute_and_Joint_Genome_Institute._The_authors_wish_toacknowledge_the_Intelligence_Technology_Innovation_Center_forfunding_the_sequencing_and_the_NIH/NIAID_for_funding_the_annotationat_Pathema_Bioinformatics_Resource_Center._Source_DNA_is_availablefrom_Paul_Keim_(Paul.Keim@nau.edu)_at_Northern_Arizona_University.Genome_coverage:_10XSequencing_technology:_ABIChromosome_II_of_this_genome_has_been_deposited_under_the_WholeGenome_Shotgun_project_accession_ACOJ00000000.COMPLETENESS:_full_length. NA 03-OCT-2011 Burkholderia_pseudomallei_MSHR346_chromosome_I,_complete_genome. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_C4KTE3_BURPS.gb Pseudomonas_RNA_homology_group_II 237810278 Submitted_(14-MAY-2009)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_012695 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1314 I genomic_DNA NA MSHR346 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 536230 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_012695.1 ATGACTGCCCCCCAACCGTGCGCGCGCCAGCCGGCGCGCGCCGCTGCCGCCGCGTTCGTCGGCACGATGATCGAGTGGTACGACTTCTACATTTACGCGACCGCCGCCGCGCTCGTGTTCGGCGAGTTGTACTTTCCGTCGGGCGACCCGTTCGTCAGCACGATGGCTTCGTTCGGCACGTTCGCGGTCGGCTTTTTCGCGCGGCCGCTCGGCGGCGTCGTGTTCGGCCATCTCGGCGACCGGATCGGCCGCAAGAAGGCGCTGATGACGACGCTCGCGATGATGGGCGCGGCGACCGTGTGCATCGGCCTGTTGCCGAGCCATGCGTCGATCGGTGCGCTCGCGCCGGTGCTGCTCGTGCTGCTGCGGATCGTGCAGGGCGTCGCGGTGGGCGGCGAGTGGGGCGGCGCGGTGCTGATGGCGGGCGAGCACGCGCCCGAGGGGCGGCGCACGTTCTTCGCTTCGTTCGCGCAGTTGGGCAGCCCGGCCGGGCTGATCCTGTCGCTCGTCGCGTTTCGCGCGGCCACGTCGCTCGAGAAGGCGGACTTTCTCGCATGGGGCTGGCGCCTGCCGTTTCTCGCGAGCGCGGTGCTGCTGATCGTCGGTCTCGCGATCCGGCTGGGCGTGAACGAATCGCCGGAATTCGAGGCGGTGAAGCGCACGCGCGCCACCGCGAAGCTGCCGATCGCCGACGTGTTGCGCTCCGCGTCGGGGCTCGTGCTGCTGTGCATCGGCGCGAACACGATCGGCATCGCCGGCGTGTATTTCACGAACACGTTCATGATCGCGTACACGACGCAGCAGCTCGGCATCCCGCGCGCGACGATCCTCGATTGCCTGTTCGCGGTCGCGATCATCCAGTTCGTCGCGCAGCCCGCCGCCGCGTGGCTGGCCGAAAAGCTCGGCGGCGCGCGTTTCCTGAAGCTCGCGGCCGTCGCCGCGATGGCTTCGCCGTATCCGATGTTCATGCTCGTGACGAGCGGGCGGCCCGGCGCGATCGTCGCCGGCATCGCGCTCGCGGTGGTCTGCATGGCGGGCTTCTATTCGGTGATCGCGGGTTTCGTCTCCGGCGTGTTCGCGGCGCGCATCCGCTATTCGGCGATCTCGCTGTCCTACCAGGTGTGCGGCGCGCTCGCGGGCGGCCTCACGCCGCTTGTCGGCACGTGGCTCGCGCATCGCTACGCGGGCGCATGGCTGCCGCTCGCGCTGTTCTATACGTGTCTCGCGGGGCTCTCGCTCGTGAGCGTCGTCGCGCTCGACGCGCGCCGCGCCGCGCGAGGCGCTTCGGGCCGCGAAGCGCTGGAGGCGCGCTGA > 283 BURPS1106B_A0062 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EES27639.1 11 MATVGGQIAHAPMTGDEKRVIFASSLGTVFEWYDFYLAGSLAAYISKSFFSGVNPTAAFIFTLLGFAAGFAVRPFGAIVFGRLGDLVGRKHTFLITIVIMGISTFVVGFLPGYASIGIAAPVIFIAMRLLQGLALGGEYGGAATYVAEHAPSHRRGFYTSWIQTTATLGLFLSLLVILGVRTAIGEEAFGSWGWRVPFVASILLLAVSVWIRLQLNESPVFLRIKAEGKTSKAPLTEAFGQWKNLKIVILALIGLTAGQAVVWYTGQFYALFFLTQTLKVDGASANILIALALLIGTPFFVFFGSLSDRIGRKPIILAGCLIAALTYFPLFKALTHFANPALEAATQKAPITVVANPDECSFQFNPVGTAKFTSSCDIAKSALAKSGLNYENVAAPAGTLAQIKIGDTAIATYDGKAADAKDQAKAFDKTLASTLKAAGYPAKADPAQLNWPMTTVILAILVIYVTMVYGPIAAMLVEMFPTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAAKGDIYSGLWYPIGVALVTFVIGLLFVKETKDSNIYAQD beta_subgroup Burkholderia_pseudomallei_1106b Burkholderia_pseudomallei_1106b CM000774 66048..67706 Harkins,D.M.,_DeShazer,D.,_Woods,D.E.,_Brinkac,L.M.,_Brown,K.A.,_Hung,G.C.,_Tuanyok,A.,_Zhang,B._and_Nierman,W.C. NA 0:1659 Isolated_in_1996_from_pus_aspirated_from_liver_abscess_from_patientat_the_Wellcome_Trust_Unit,_Bangkok,_Thailand._The_patientsurvived_to_discharge._This_strain_will_be_used_for_comparativegenomics.The_annotation_submitted_here_is_the_result_of_two_distinctannotation_efforts._DeShazer,_D.,_Woods,_D.E._and_Nierman,_W.C.generated_the_initial_functional_annotation._Participatinginstitutions_for_the_initial_annotation_were:_U.S._Army_MedicalResearch_Institute_of_Infectious_Diseases,_University_of_Calgaryand_the_J._Craig_Venter_Institute._The_annotation_was_subsequentlymodified_by_Harkins,_D.M.,_Brinkac,_L.M.,_Brown,_K.A.,_Hung,_G.C.,Tuanyok,_A.,_Zhang,_B._and_Nierman,_W.C._at_thePathema-Burkholderia_annotation_jamboree_held_at_the_J._CraigVenter_Institute,_September_24-26,_2008_(http://pathema.jcvi.org).Participating_institutions_for_the_genome_revision_were:_The_J.Craig_Venter_Institute,_University_of_Texas_at_Austin,_ImperialCollege_London,_Armed_Forces_Institute_of_Pathology,_and_NorthernArizona_University.DNA_is_available_from_William_Nierman_(wnierman@jcvi.org)_of_the_J.Craig_Venter_Institute.Genome_Coverage:_8.5xSequencing_Technology:_ABI. NA 26-JUN-2009 Burkholderia_pseudomallei_1106b_chromosome_I,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_C5Z9L8_BURPS.gb Pseudomonas_RNA_homology_group_II 242137344 Submitted_(20-MAY-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA CM000774 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1659 I genomic_DNA NA 1106b NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 357347 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA CM000774.1 TCAATCCTGCGCGTAGATATTCGAATCCTTGGTTTCCTTCACGAACAGCAGCCCGATCACGAACGTGACGAGCGCGACGCCGATCGGATACCAGAGCCCCGAATAGATGTCGCCCTTCGCCGCGACGATCGCGAACGCCGTCGCCGGCAGGAAGCCGCCGAACCAGCCGTTGCCGATGTGATACGGCAGCGACATCGACGTATAGCGAATCCGCGTCGGGAACATCTCGACCAGCATCGCCGCGATCGGCCCGTACACCATCGTCACGTAGATCACGAGTATCGCGAGGATCACCGTCGTCATCGGCCAGTTGAGCTGGGCCGGGTCGGCTTTCGCCGGGTAGCCCGCCGCCTTCAGCGTCGACGCGAGCGTCTTGTCGAACGCCTTCGCCTGGTCTTTTGCGTCGGCGGCCTTGCCGTCGTACGTGGCGATCGCCGTGTCGCCGATCTTGATCTGCGCAAGCGTGCCCGCCGGCGCGGCGACGTTCTCGTAATTGAGGCCCGATTTCGCGAGCGCGCTTTTCGCGATGTCGCAGGACGACGTGAACTTCGCCGTGCCCACCGGGTTGAACTGGAACGAGCATTCGTCGGGATTGGCGACCACCGTGATCGGCGCCTTTTGCGTCGCCGCCTCGAGCGCCGGATTCGCGAAGTGCGTGAGCGCCTTGAAGAGCGGGAAGTAGGTGAGCGCGGCGATCAGGCAGCCGGCGAGGATGATCGGCTTGCGGCCGATCCTGTCGGACAGCGAGCCGAAGAACACGAAGAACGGCGTGCCGATCAGAAGGGCGAGCGCGATCAGGATGTTCGCGCTCGCGCCGTCGACCTTCAGCGTCTGCGTGAGGAAGAAGAGCGCATAGAACTGGCCCGTGTACCAGACCACCGCCTGGCCCGCCGTCAGCCCGATGAGCGCGAGGATCACGATCTTCAGGTTCTTCCACTGGCCGAACGCTTCGGTGAGCGGCGCCTTCGACGTCTTGCCCTCGGCCTTGATCCGCAGGAACACCGGCGATTCGTTCAGTTGCAGGCGGATCCACACGGATACGGCGAGCAGCAGGATCGACGCGACGAACGGCACGCGCCAGCCCCAACTGCCGAATGCTTCCTCGCCGATCGCGGTGCGCACGCCGAGAATCACGAGGAGCGACAGGAACAGGCCGAGCGTCGCGGTCGTCTGGATCCACGACGTATAGAAGCCGCGGCGGTGCGAGGGCGCATGCTCGGCCACGTATGTCGCCGCGCCGCCGTATTCGCCGCCGAGCGCGAGGCCTTGCAGCAGCCGCATCGCGATGAAGATCACGGGCGCGGCGATGCCGATCGACGCGTAGCCCGGCAGGAAGCCGACGACGAACGTCGAGATCCCCATGATCACGATCGTGATGAGGAACGTATGCTTGCGTCCCACGAGGTCGCCGAGGCGGCCGAACACGATCGCGCCGAACGGTCGGACGGCGAAGCCCGCCGCGAAGCCGAGCAGCGTGAAGATGAACGCGGCGGTCGGGTTGACGCCTGAAAAGAAGCTCTTGCTGATGTAGGCCGCGAGCGAGCCGGCCAGATAGAAGTCGTACCACTCGAACACGGTGCCGAGCGACGATGCGAAGATCACGCGCTTTTCGTCGCCCGTCATCGGCGCGTGCGCAATTTGTCCGCCAACCGTTGCCAT > 284 BURPS1106B_A2242 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 MFS_transporter,_metabolite:H+_symporter_(MHS)_family_protein EES25172.1 11 MSDTRLSASAAAPRAANTTNHRRIVFASFIGTAIEFYDFYVYATAAALVIGPVFFPHGSATAQALSAFVTFGIAFIARPIGSFLFGHFGDRIGRKSTLVASLLVMGVSTTAIGFVPGYDAIGALAPVLLCVLRFGQGIGLGGEWGGAALLATEHAPAGKRGWFGMFPQLGPSIGFLASNGLFFALALTLSDEQFRSWGWRIPFLVSAALVAVGLYVRLKIAETPAFQAALDRHERVRVPLAALVAHHWRPTLLGALAMVVCYTLFYISTVFSLSYGVSTLHFSRQSFLGLLCFAVLFMALATPLAAAAADRFGRKPVLIAGAIAALLSGFTMAPLLGSGSMPLVALFLTIELFLMGMTFAPMGALLPELFPTNVRYTGAGVAYNLGGILGASIAPYIAQLLAARGGLAWVGAYVSAAAAISLVGVLLMRETRDAKLT beta_subgroup Burkholderia_pseudomallei_1106b Burkholderia_pseudomallei_1106b CM000774 2226778..2228091 Harkins,D.M.,_DeShazer,D.,_Woods,D.E.,_Brinkac,L.M.,_Brown,K.A.,_Hung,G.C.,_Tuanyok,A.,_Zhang,B._and_Nierman,W.C. NA 0:1314 Isolated_in_1996_from_pus_aspirated_from_liver_abscess_from_patientat_the_Wellcome_Trust_Unit,_Bangkok,_Thailand._The_patientsurvived_to_discharge._This_strain_will_be_used_for_comparativegenomics.The_annotation_submitted_here_is_the_result_of_two_distinctannotation_efforts._DeShazer,_D.,_Woods,_D.E._and_Nierman,_W.C.generated_the_initial_functional_annotation._Participatinginstitutions_for_the_initial_annotation_were:_U.S._Army_MedicalResearch_Institute_of_Infectious_Diseases,_University_of_Calgaryand_the_J._Craig_Venter_Institute._The_annotation_was_subsequentlymodified_by_Harkins,_D.M.,_Brinkac,_L.M.,_Brown,_K.A.,_Hung,_G.C.,Tuanyok,_A.,_Zhang,_B._and_Nierman,_W.C._at_thePathema-Burkholderia_annotation_jamboree_held_at_the_J._CraigVenter_Institute,_September_24-26,_2008_(http://pathema.jcvi.org).Participating_institutions_for_the_genome_revision_were:_The_J.Craig_Venter_Institute,_University_of_Texas_at_Austin,_ImperialCollege_London,_Armed_Forces_Institute_of_Pathology,_and_NorthernArizona_University.DNA_is_available_from_William_Nierman_(wnierman@jcvi.org)_of_the_J.Craig_Venter_Institute.Genome_Coverage:_8.5xSequencing_Technology:_ABI. NA 26-JUN-2009 Burkholderia_pseudomallei_1106b_chromosome_I,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_C5ZA22_BURPS.gb Pseudomonas_RNA_homology_group_II 242137344 Submitted_(20-MAY-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA CM000774 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1314 I genomic_DNA NA 1106b NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 357347 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA CM000774.1 ATGTCGGACACCCGTCTTTCCGCTTCCGCCGCCGCGCCGCGCGCCGCGAACACGACGAACCACCGTCGCATCGTGTTCGCGAGCTTCATCGGCACGGCGATCGAGTTCTACGATTTCTACGTGTACGCGACAGCCGCCGCGCTCGTGATCGGCCCCGTGTTCTTCCCGCACGGCTCGGCCACCGCGCAGGCGCTGTCCGCGTTCGTCACGTTCGGCATCGCGTTCATCGCGCGGCCGATCGGCTCGTTCCTGTTCGGCCACTTCGGCGACCGGATCGGCCGCAAGTCGACGCTCGTCGCGTCACTGCTCGTGATGGGCGTGTCGACGACCGCGATCGGCTTCGTGCCCGGCTACGACGCGATCGGCGCGCTCGCGCCCGTGCTGCTCTGCGTGCTGCGGTTCGGCCAGGGCATCGGCCTCGGCGGCGAATGGGGCGGCGCCGCGCTCCTCGCCACCGAGCACGCGCCCGCCGGCAAGCGCGGCTGGTTCGGGATGTTTCCGCAGCTCGGCCCGTCGATCGGCTTTCTCGCGTCGAACGGCCTGTTCTTCGCGCTTGCGCTCACGCTGTCCGACGAGCAGTTTCGTTCGTGGGGCTGGCGCATCCCGTTTCTCGTGAGCGCGGCGCTCGTCGCGGTCGGCCTCTACGTACGCCTGAAGATCGCCGAAACGCCCGCGTTCCAGGCCGCGCTCGACCGGCACGAGCGCGTGCGCGTACCGCTCGCGGCGCTCGTTGCGCACCACTGGCGGCCGACGCTGCTCGGCGCGCTCGCGATGGTCGTCTGCTATACGCTGTTCTATATCTCGACGGTGTTCTCGCTGTCGTACGGCGTCTCGACGCTGCATTTCTCGCGCCAGAGCTTCCTCGGCCTGCTGTGTTTCGCGGTGCTGTTCATGGCGCTCGCGACGCCGCTCGCCGCCGCGGCCGCCGATCGCTTCGGTCGCAAGCCGGTGCTGATCGCGGGCGCCATCGCCGCGCTGCTGTCCGGCTTCACGATGGCGCCGCTGCTCGGCAGCGGCTCGATGCCGCTCGTCGCGCTGTTCCTGACGATCGAGCTATTCCTGATGGGCATGACGTTCGCGCCGATGGGCGCGCTGCTGCCGGAACTGTTCCCGACCAACGTGCGCTACACGGGCGCGGGGGTCGCGTACAACCTGGGCGGCATCCTGGGCGCGTCGATCGCGCCTTACATCGCGCAGTTGCTTGCCGCGCGCGGCGGACTTGCGTGGGTCGGCGCATACGTGTCGGCCGCGGCGGCGATCAGCCTCGTCGGCGTGCTGCTGATGCGCGAAACGCGCGATGCGAAGCTGACATAA > 285 BURPS1106B_0308 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family EES21088.1 11 MTRGIPPSPPARQPRRAAGAAFVGTMIEWYDFYIYANAAALVFGELFFPSHDPFTSTMASFATFAVGFFARPLGGLFFGHLGDRIGRKKALMATLALMGAATVCVGLLPTYERVGLLAPVLLVLLRIVQGIAVGGEWGGAVLMAGEHAPYGRRTFFASFAQLGSPAGLILSLVAFRAVASMEHGAFMSWGWRLPFLASIALLAVGVFVRLKVDESPEFAHEKAMSRTVARPLAEVLRTSRAMLLFCLCANTIGIAGLYFTNTFMIAFTTQHVGVTKSLILDCLFIVAIIQFVTQPIAAWLGGKLGDARFLKLAALFAMASPYPMFALVQTGRLAPMVIGIAIATVFLAGFYSVIAGFVSGAFPTRVRYSAISISYQMCGAIAGGLTPLVGTWLAHRFAGQWWPLAVFYTCLAALSLGGVIALDARRHRRADVADAVLAR beta_subgroup Burkholderia_pseudomallei_1106b Burkholderia_pseudomallei_1106b CM000775 303521..304840 Harkins,D.M.,_DeShazer,D.,_Woods,D.E.,_Brinkac,L.M.,_Brown,K.A.,_Hung,G.C.,_Tuanyok,A.,_Zhang,B._and_Nierman,W.C. NA 0:1320 Isolated_in_1996_from_pus_aspirated_from_liver_abscess_from_patientat_the_Wellcome_Trust_Unit,_Bangkok,_Thailand._The_patientsurvived_to_discharge._This_strain_will_be_used_for_comparativegenomics.The_annotation_submitted_here_is_the_result_of_two_distinctannotation_efforts._DeShazer,_D.,_Woods,_D.E._and_Nierman,_W.C.generated_the_initial_functional_annotation._Participatinginstitutions_for_the_initial_annotation_were:_U.S._Army_MedicalResearch_Institute_of_Infectious_Diseases,_University_of_Calgaryand_the_J._Craig_Venter_Institute._The_annotation_was_subsequentlymodified_by_Harkins,_D.M.,_Brinkac,_L.M.,_Brown,_K.A.,_Hung,_G.C.,Tuanyok,_A.,_Zhang,_B._and_Nierman,_W.C._at_thePathema-Burkholderia_annotation_jamboree_held_at_the_J._CraigVenter_Institute,_September_24-26,_2008_(http://pathema.jcvi.org).Participating_institutions_for_the_genome_revision_were:_The_J.Craig_Venter_Institute,_University_of_Texas_at_Austin,_ImperialCollege_London,_Armed_Forces_Institute_of_Pathology,_and_NorthernArizona_University.DNA_is_available_from_William_Nierman_(wnierman@jcvi.org)_of_the_J.Craig_Venter_Institute.Genome_Coverage:_8.5xSequencing_Technology:_ABI. NA 26-JUN-2009 Burkholderia_pseudomallei_1106b_chromosome_II,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_C5ZQN5_BURPS.gb Pseudomonas_RNA_homology_group_II 242134162 Submitted_(20-MAY-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA CM000775 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1320 II genomic_DNA NA 1106b NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 357347 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA CM000775.1 TTGACCCGGGGCATCCCACCGAGCCCGCCGGCGCGCCAGCCGCGCCGTGCGGCCGGCGCCGCGTTCGTCGGCACGATGATCGAGTGGTACGACTTCTACATCTACGCGAACGCGGCCGCGCTCGTCTTCGGCGAGCTGTTCTTCCCGTCGCACGATCCGTTCACGAGCACGATGGCGTCGTTCGCGACGTTCGCGGTCGGCTTCTTCGCGCGCCCGCTCGGCGGGCTCTTCTTCGGCCATCTCGGCGACCGGATCGGCCGCAAGAAGGCGCTGATGGCGACGCTCGCGCTGATGGGCGCGGCGACGGTCTGCGTCGGTCTGCTGCCGACCTACGAACGCGTCGGCCTGCTCGCGCCCGTGCTGCTCGTGCTGCTGCGCATCGTGCAGGGCATCGCGGTGGGCGGCGAGTGGGGCGGCGCGGTGCTGATGGCGGGCGAGCATGCGCCGTATGGGCGGCGCACGTTCTTCGCTTCGTTCGCGCAGTTGGGCAGCCCGGCCGGGCTGATCCTGTCGCTCGTCGCGTTTCGCGCGGTCGCGTCGATGGAGCACGGCGCGTTCATGTCCTGGGGCTGGCGGCTGCCGTTTCTCGCGAGCATCGCGCTGCTCGCGGTCGGCGTGTTCGTGCGGCTGAAGGTCGACGAATCGCCCGAGTTCGCGCATGAGAAGGCGATGTCGCGCACCGTCGCGCGGCCGCTCGCCGAGGTGCTGCGCACGTCGCGCGCGATGCTGCTGTTCTGCCTGTGCGCGAACACGATCGGTATCGCGGGGCTGTATTTCACGAACACGTTCATGATCGCGTTCACGACGCAGCATGTGGGCGTGACGAAATCGCTGATCCTCGATTGCCTGTTCATCGTCGCGATCATCCAGTTCGTGACGCAGCCGATCGCCGCGTGGCTCGGCGGCAAGCTCGGCGACGCACGCTTTCTCAAGCTCGCCGCGCTGTTCGCGATGGCCTCGCCCTATCCGATGTTCGCGCTCGTGCAGACGGGGCGGCTCGCGCCGATGGTGATCGGCATCGCGATCGCGACCGTGTTTCTCGCCGGTTTCTACTCGGTGATCGCGGGCTTCGTGAGCGGCGCGTTCCCGACGCGCGTGCGCTATTCGGCGATCTCGATCTCGTACCAGATGTGCGGCGCGATCGCGGGCGGGCTGACGCCGCTCGTCGGCACGTGGCTCGCGCACCGGTTCGCCGGGCAGTGGTGGCCGCTCGCGGTGTTCTATACGTGCCTCGCGGCGCTCTCGCTCGGCGGCGTGATCGCGCTCGACGCGCGCCGCCATCGGCGGGCCGACGTCGCCGACGCCGTGCTCGCGCGCTGA > 286 BURPS1710A_1183 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EET07422.1 11 MFRRGAPPHRRIERRAPEARMSARHGGAPLALDIGATLDHGPFTAMQRVAVLLAAFAIVLDGFDSQLIGFAIPVLIKEWRITRDAFAPAVAAGLFGMGVGSACAGLFADRFGRRWAIIGSVFVFGAATCAIGFAPNVATIAALRFVAGLGIGGALPTATTMTAEYTPARRRTMMVTATIVCVPAGGMLAGLFAHEVLPAYGWRSLFWLGGALPLALGLLLVRALPESPRYLARNPARWRELGALLARMGRPVADGTAFTDLAEARAHEGQRRGVRALFSAAYARDTIALWCAFCMCLLAVYSAFSWLPTMLTSQGLSVSVAGSGLTAYNLGGVLGALGCALAIGRFGSRWPLAFCCAGGAASAAWLLGVDAGSHAGWLIVGLAAHGFFVNAVQSTMYALCTFIYPTPVRATGTAGAVAFGRVGAILSAFAGAYVISAGGANAYLAMLAAAMAVVLVALLALRRHIPRLRRGGLPAADELARTAP beta_subgroup Burkholderia_pseudomallei_1710a Burkholderia_pseudomallei_1710a CM000832 1124458..1125912 Harkins,D.M.,_DeShazer,D.,_Woods,D.E.,_Brinkac,L.M.,_Brown,K.A.,_Hung,G.C.,_Tuanyok,A.,_Zhang,B._and_Nierman,W.C. NA 0:1455 This_record_for_Burkholderia_pseudomallei_1710a_chromosome_Ireplaces_the_original_record,_accession.version_CM000777.1._Thatoriginal_record_was_removed_because_its_accession_number_hadpreviously_been_reserved_for_use_in_a_publication_regarding_maizechromosome_1_in_Project_10769.Isolated_from_blood_culture_in_1996_from_a_52-year_old_male_ricefarmer_with_a_new_diagnosis_of_diabetes_mellitus_presenting_toSappasithiprasong_hospital,_Ubon_Ratchathani,_NE_Thailand.Disseminated_disease_(bacteremia_plus_lung_and_soft_tissueinvolvement)._The_patient_survived_to_discharge._Relapsed_in_1999(see_strain_Burkholderia_pseudomallei_1710b_deposited_in_GenBankAccession_Number_CP000124_and_CP000125)._This_strain_will_be_usedfor_comparative_genomics.The_annotation_submitted_here_is_the_result_of_two_distinctannotation_efforts._DeShazer,_D.,_Woods,_D.E._and_Nierman,_W.C.generated_the_initial_functional_annotation._Participatinginstitutions_for_the_initial_annotation_were:_U.S._Army_MedicalResearch_Institute_of_Infectious_Diseases,_University_of_Calgaryand_the_J._Craig_Venter_Institute.The_annotation_was_subsequently_modified_by_Harkins,_D.M.,_Brinkac,L.M.,_Brown,_K.A.,_Hung,_G.C.,_Tuanyok,_A.,_Zhang,_B._and_Nierman,W.C._at_the_Pathema-Burkholderia_annotation_jamboree_held_at_the_J.Craig_Venter_Institute,_September_24-26,_2008(http://pathema.jcvi.org)._Participating_institutions_for_thegenome_revision_were:_The_J._Craig_Venter_Institute,_University_ofTexas_at_Austin,_Imperial_College_London,_Armed_Forces_Institute_ofPathology,_and_Northern_Arizona_University.DNA_is_available_from_William_Nierman_(wnierman@jcvi.org)_at_the_J.Craig_Venter_Institute.Genome_Coverage:_7.6xSequencing_Technology:_ABI. NA 09-DEC-2009 Burkholderia_pseudomallei_1710a_chromosome_I,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_C6TUS9_BURPS.gb Pseudomonas_RNA_homology_group_II 270356909 Submitted_(27-MAY-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA CM000832 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1455 I genomic_DNA NA 1710a NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320371 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA CM000832.1 GTGTTTCGCCGCGGCGCGCCGCCGCATCGCCGCATCGAGCGCCGCGCGCCGGAGGCTCGCATGAGCGCCCGGCACGGCGGTGCGCCGCTTGCGCTCGATATCGGCGCGACGCTCGACCACGGTCCGTTCACCGCGATGCAGCGCGTCGCGGTGCTGCTCGCCGCGTTCGCGATCGTGCTCGACGGCTTCGACAGCCAGTTGATCGGCTTCGCGATTCCGGTGCTGATCAAGGAGTGGAGGATCACGCGCGACGCGTTCGCCCCCGCCGTCGCGGCGGGCCTGTTCGGGATGGGCGTCGGCAGCGCGTGCGCGGGCCTGTTCGCGGACCGCTTCGGCCGGCGCTGGGCGATCATCGGCAGCGTGTTCGTGTTCGGCGCGGCTACCTGCGCGATCGGCTTCGCGCCGAACGTGGCGACCATCGCCGCGCTGCGCTTCGTCGCGGGCCTCGGGATCGGCGGCGCGCTGCCCACCGCGACGACGATGACGGCCGAGTACACGCCCGCGCGCCGCCGCACGATGATGGTGACGGCGACGATCGTCTGCGTGCCGGCGGGCGGGATGCTCGCGGGCCTGTTCGCGCACGAGGTGCTGCCCGCGTACGGCTGGCGCAGCCTGTTCTGGCTCGGCGGCGCGCTGCCGCTCGCGCTCGGCTTGCTGCTCGTGCGCGCGCTGCCCGAATCGCCGCGCTATCTCGCGCGCAATCCTGCGCGCTGGCGCGAGCTCGGCGCGCTGCTCGCGCGCATGGGCCGGCCCGTCGCCGACGGCACCGCCTTCACCGATCTTGCCGAGGCGCGTGCGCACGAAGGGCAGCGGCGCGGTGTGCGTGCGCTGTTCTCGGCGGCCTACGCGCGCGACACGATCGCGTTGTGGTGCGCATTCTGCATGTGCCTGCTCGCCGTCTACAGCGCATTCAGCTGGCTGCCGACGATGCTGACGTCGCAAGGCTTGAGCGTGTCGGTCGCGGGTTCCGGGCTCACCGCATACAACCTCGGCGGCGTGCTGGGCGCGCTCGGCTGCGCGCTCGCGATCGGCCGTTTCGGTTCGCGCTGGCCGCTCGCGTTCTGCTGTGCGGGCGGCGCGGCGAGCGCCGCGTGGCTGCTCGGCGTCGATGCCGGCAGCCACGCCGGCTGGCTGATCGTCGGCCTCGCCGCGCACGGCTTCTTCGTGAACGCGGTGCAGTCGACGATGTACGCGCTCTGCACGTTCATCTATCCGACGCCCGTGCGCGCGACGGGCACCGCCGGCGCCGTCGCGTTCGGCCGCGTCGGCGCGATCCTGAGCGCGTTCGCGGGCGCGTACGTGATCTCGGCGGGCGGTGCGAACGCGTACCTGGCGATGCTCGCCGCCGCGATGGCGGTCGTGCTCGTCGCGTTGCTCGCGCTGCGCCGGCACATTCCGCGGCTGCGCCGCGGCGGGCTGCCGGCGGCCGACGAGCTCGCGCGCACCGCGCCCTGA > 287 BURPS1710b_A1226 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter YP_336383.1 11 MPTPTPGTPRPPRTPQPVRAALAAFIGTTVEFYDYYTYATAAALVLGDVFFPSDNPFVSTMASFATFFVGFVARPLSGAVFGHLGDRIGRKKMLVLTMFLMGAATTGIGLLPGYATIGVWAPVLLVLLRILQGIAVGGEWGGAVLMASEHASAGRRTLFASFPQMGSPAGLILSLLAFRYVTSLDHARFVAWGWRLPFLASFVLLLIGVAVRLGVNESPEFERVRDSHAVARFPVAEVLRTAWYPIVLAAAATTIGSAGFFFTNTFMISYVTTYLGMSKSFILDCLFAVTLIQLLSQPVSALLAQRFGETRFLVCAALLSMLTPYPMFVLVRTHDPVAIVAGIAFAVVALSAVYAVIAGFMSAAFPTRVRYSGISIAYQLCALVAGGTTPLVGTMIAQRYRGEWLPLALFFSLLAFVSLVGIVGLGRYRRNLHAAAPRAWAVNP beta_subgroup Burkholderia_pseudomallei_1710b Burkholderia_pseudomallei_1710b NC_007435 1537859..1539193 NA NA 0:1335 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000125.Source_DNA_and_bacteria_available_from_Don_Woods(woods@ucalgary.ca).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_pseudomallei_1710b_chromosome_chromosome_II,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_Q3JJ70_BURP1.gb Pseudomonas_RNA_homology_group_II 76817237 Submitted_(03-OCT-2005)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_007435 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1335 II genomic_DNA NA 1710b NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320372 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_007435.1 ATGCCAACCCCGACGCCCGGCACGCCCCGCCCTCCCCGCACGCCCCAACCCGTGCGCGCCGCGCTGGCCGCCTTCATCGGCACCACCGTCGAGTTCTACGATTACTACACGTACGCCACCGCCGCCGCGCTCGTGCTCGGCGACGTGTTCTTCCCGAGCGACAACCCTTTCGTCAGCACGATGGCATCGTTCGCCACGTTCTTCGTCGGCTTCGTCGCGCGCCCACTGAGCGGTGCGGTGTTCGGCCATCTCGGCGACCGGATCGGCCGCAAGAAAATGCTCGTCCTGACGATGTTCCTGATGGGCGCCGCGACAACCGGCATCGGCCTGCTGCCCGGCTACGCGACGATCGGCGTCTGGGCCCCCGTCCTGCTCGTGCTGCTGCGCATCCTCCAGGGCATCGCCGTCGGCGGCGAATGGGGCGGCGCGGTGCTGATGGCAAGCGAGCACGCGAGCGCCGGGCGCAGGACGCTCTTCGCGTCGTTTCCGCAAATGGGCAGCCCCGCCGGGCTGATCCTCTCGCTGCTCGCGTTCCGCTACGTCACGTCGCTCGATCACGCCCGCTTCGTCGCGTGGGGCTGGCGCCTGCCGTTTCTCGCAAGCTTCGTGCTGTTGCTGATCGGCGTCGCGGTACGGCTCGGCGTCAACGAATCGCCGGAGTTCGAGCGCGTGCGCGACAGCCACGCGGTCGCCCGATTTCCGGTCGCCGAAGTGCTGCGCACCGCGTGGTATCCGATCGTGCTCGCCGCGGCCGCGACGACGATCGGCTCCGCCGGCTTCTTCTTCACGAACACGTTCATGATCTCGTACGTGACGACGTATCTCGGGATGTCGAAATCGTTCATCCTCGATTGCCTGTTCGCCGTCACGCTCATCCAGTTGCTGTCGCAGCCCGTCTCGGCGCTGCTCGCGCAACGTTTCGGCGAAACGCGTTTCCTCGTCTGCGCGGCGCTGCTGTCGATGCTCACGCCGTATCCGATGTTCGTGCTCGTGCGCACGCACGATCCGGTTGCGATCGTCGCGGGCATCGCGTTCGCGGTCGTCGCGCTCTCCGCCGTCTACGCGGTGATCGCCGGCTTCATGTCCGCCGCGTTCCCCACGCGCGTGCGCTATTCGGGCATCTCGATCGCCTACCAGCTATGCGCGCTAGTCGCGGGCGGCACCACGCCGCTCGTCGGCACGATGATCGCGCAGCGCTATCGCGGAGAATGGCTGCCGCTCGCGCTGTTCTTCTCGCTGCTGGCGTTCGTGTCGCTCGTCGGCATCGTGGGGCTCGGGCGGTATCGCCGGAATCTGCACGCGGCCGCGCCGCGGGCATGGGCGGTGAATCCGTGA > 288 BURPS1710b_A0487 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 hypothetical_protein YP_335646.1 11 MRRRARGRARPARHAGFLAGRRSIHRFGNPFRERQRIHQRIRPADRRAGARLAAAPRAAAHAGAGPLLPYRARRSGPPRGRSACGVRDGRRRSRLDVHERRPVRRRRELPRVPAQGGRDRRSAASRDRRSGHGQGGRHLRADARRSRERRDRSRIRRVFAAAAEDLRGHGGVVPADAARVRRTRLSPLRMEVRQPERAVARGGASLRLHVRGAVPAGGRLQGALARHRVVFDRRRRMAGAALGVRAVARGREFRRARPSAAVAVDVDRGGARALTRDARRGARPVKCPNPGGHARPPSDDNDIRRHFGHGFNAKRAARNGAGDDDRRRRHLGAPRSPAAHAQRLETRRAAESRLLLRALRSAVQRLRRARPREGRHPERDDARAVRHDGRRELHRRAVRGALHRHDRVRLSRRPLRPPRGVYVVAAVVHGRERRDGVPGYRRGPQFLALRRRAGARRRNGDDRHIYLGVGPETDSRPRVRVRAGGRLRRGARGGAARVSAGAACAVRPRRLALGRADRRARRDLRLVDSPPVAGKPALARAAGPA beta_subgroup Burkholderia_pseudomallei_1710b Burkholderia_pseudomallei_1710b NC_007435 669959..671377 NA NA 706:>1419 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000125.Source_DNA_and_bacteria_available_from_Don_Woods(woods@ucalgary.ca).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_pseudomallei_1710b_chromosome_chromosome_II,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_Q3JLA8_BURP1.gb Pseudomonas_RNA_homology_group_II 76817237 Submitted_(03-OCT-2005)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_007435 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1419 II genomic_DNA NA 1710b NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320372 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_007435.1 TCAACGCGATATCGCTTCGAGCGCGACGCCTTTCGTGCGCGGCCCCATCAGCCCGATCGACGCCATCACGATCGCCATCGCGCCCGCGATGAACACGAACACGCCGGGCGTGCCGAATCCCTTCAGCACGGCCGCGATCGCGAACGACGTGAAGATCGCCGAAAAGCGGCTCCACGAATAGACGAAGCCGACCGCGCGCGCGCGAATCGCGGTCGGAAACAGCTCGGCCTGATAGGCATGGAAGCTGTACGACATGATGTTGTTCGCGAGCGTGAGGCATACGCCGAGCGCGACGAGCAGCCACGCGGCCGACGCGTGGCTGAACAGCAGCCCCGCGATCATCGCCGCGCCCGCCATCGCGACGATCACCGTCTTGCGCTCGAAGCGGTCGGCGATCGCAAGGCCGATCAACGGCCCGATCGGCGCGGCGAGCGCGATCACGCTCGAATACATGAGGCTCGTCGTGACGGTGATCCCCTGCTTGATCAGCAGCGTCGGCACCCAGTTCGCGAAGCCGTAGAAGCCCACCGTCTGAAACACGTTGAAGATCGTCATCATCACCGTGCGCCTGCGGTACGGCGGCACCCACATGTCGGCGAACCGGCCGCGCGGCGCGATGGGCTCGGCGGGCGCGGGCGGCGGCAGCGGCCGGCCGTACTCGGCCTCGACCTTCGCCTCGAGCGCGGCGAGCACGCGCTCGGCTTCGTCAAGCCGGCCCTGCTGCGCGAGCCAGCGCGGGCTTTCCGGCAACTGGCGGCGAATCCACCAGACGAAGATCGCGCCGTGCGCGCCGATCAGCACGACCCAGCGCCAGCCGTCGAGGCCGAACGGCGCATGCGGCACCAGCAGATACGCGAGCAGCGCCACCACGGGCACCGCGACGAAGCCGACCGCCTGCTCGCACGCGAACGCGCGGCCGCGAATCTGTTTCGGGACCAACTCCGAGATATATGTGCCGATCGTCACCATTTCGACGCCGAGCCCCAGCCCGACGACGAAGCGCCAGAAATTGAGGCCCCCGGCGGTATCCTGGAACGCCATCACGACGTTCGCGGCCGTGTACCACAGCAGCGACCACGTAAACACCGCGCGGCGGCCGAAGCGGTCGGCGAGAAAGCCGCACGCGATCGTGCCGATGAAGAGCCCCGCGAACAGCGCGGCGATGAAGCTCGCGACGCCCGTCGTGCCGAACAGCCCGCGCGTCGTCGCGCTCAGGATGCCGCCCTTCACGAGGCCGGGCGCGACGTAGCCGCTGTACAGCAGATCGTAGAGCTCGAAGAAGAAGCCGAGACTCAGCAGCGCGACGAGTTTCCAGACGCTGCGCGTGGGCGGCAGGCGATCGAGGCGCGCCGAGATGACGCCGGCGTCGATCGTCGTCGCCGGCACCGTTGCGCGCGGCGCGCTTTGCGTTGAAGCCAT > 289 BURPS1710b_3016 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 citrate-proton_symporter YP_334394.1 11 MRRPRRSRRSLIERDMSTASPAIQQESKARTVFRVVSGNFLEMYDFMVYGYYASAIAKTYFPSGNAFASLMLSLSVFGAGFLMRPVGAIVLGAYIDHHGRRKGLILTLALMALGTLTVATIPGYTTIGVLAPILVLLGRLLQGFSAGVELGGVSVYLSEIATKGNKGFYTSWQSGSQQVAVVFAAFVGVLLNRALPVEQMTSWGWRIPFLIGCLIVPFLFLIRRSLKETDEFLAKRRRPSMGEIMKSMLENWGVVLAGMGMVIMTTVSFYMITAYTPTFGKEVLHLSAIDALVVTVCVGLSNLVWLPLSGALSDRIGRRPVLIAFTALTILTAYPAMQWLVGSPSFLRLLGVELWLSFLYGSYNGAMVVALTEVMPADVRTAGFSLAYSLATTIGGFTPAISTLLIHETGNKAAPGLWLGLAAICGLIATLVLYRSPEARNQYKTT beta_subgroup Burkholderia_pseudomallei_1710b Burkholderia_pseudomallei_1710b NC_007434 3323424..3324764 NA NA 0:1341 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000124.Source_DNA_and_bacteria_available_from_Don_Woods(woods@ucalgary.ca).COMPLETENESS:_full_length. NA 24-JAN-2012 Burkholderia_pseudomallei_1710b_chromosome_chromosome_I,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_Q3JPV9_BURP1.gb Pseudomonas_RNA_homology_group_II 76808520 Submitted_(03-OCT-2005)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_007434 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1341 I genomic_DNA NA 1710b NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 320372 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Direct_Submission NA NC_007434.1 TCAAGTCGTCTTGTATTGATTGCGCGCTTCAGGCGACCGGTACAGCACGAGCGTCGCGATCAGCCCGCAGATCGCGGCGAGGCCGAGCCAGAGGCCCGGCGCCGCCTTGTTGCCGGTCTCGTGAATCAGCAGCGTCGAGATCGCCGGCGTGAAGCCGCCGATCGTCGTCGCGAGGCTGTAAGCGAGCGAGAAGCCCGCGGTGCGCACGTCGGCCGGCATCACCTCGGTCAGCGCGACGACCATCGCGCCGTTGTACGAGCCGTACAGGAACGACAGCCACAGCTCGACGCCCAACAGCCGCAGGAACGACGGCGAACCGACGAGCCACTGCATCGCCGGATACGCGGTGAGGATCGTGAGCGCGGTGAACGCGATCAGCACCGGGCGGCGGCCGATCCGATCGGACAGCGCGCCCGACAGCGGCAGCCAGACCAGGTTCGACAGCCCGACGCAAACGGTCACGACGAGCGCGTCGATCGCCGACAGATGCAGCACTTCCTTGCCGAAAGTCGGCGTGTACGCGGTGATCATGTAGAACGACACGGTCGTCATGATGACCATCCCCATGCCGGCCAGCACCACGCCCCAGTTCTCGAGCATCGACTTCATGATCTCGCCCATGCTCGGGCGGCGGCGCTTCGCGAGGAACTCGTCGGTCTCCTTCAGCGAGCGGCGGATCAGGAACAGGAACGGCACGATCAGGCAGCCGATCAGGAACGGGATGCGCCAGCCCCACGACGTCATTTGCTCGACAGGCAGCGCGCGGTTCAGCAGCACGCCGACGAACGCGGCGAACACCACGGCCACCTGCTGGCTGCCCGACTGCCACGACGTATAGAAGCCCTTGTTGCCCTTCGTCGCGATCTCGGACAGATACACCGATACGCCGCCCAGCTCGACGCCCGCCGAGAAACCCTGCAGCAGGCGGCCGAGCAGCACGAGAATCGGCGCGAGCACGCCGATCGTCGTGTAGCCCGGAATCGTCGCGACGGTCAGCGTGCCGAGCGCCATCAACGCGAGCGTCAGGATGAGGCCCTTGCGGCGGCCGTGATGGTCGATGTACGCGCCGAGCACGATCGCGCCGACGGGACGCATCAGAAAGCCCGCGCCGAACACCGACAGCGACAGCATCAGCGAGGCGAACGCGTTGCCGCTCGGGAAGTAGGTCTTGGCGATCGCGGACGCGTAGTAGCCGTAGACCATGAAGTCGTACATCTCCAGAAAGTTGCCGCTGACGACGCGGAACACGGTCCTGGCTTTGGATTCCTGCTGGATTGCGGGGGACGCGGTAGACATGTCTCTCTCGATAAGGCTGCGCCGCGACCGCCGGGGGCGGCGCAC > 290 BPSL2534 Similar_to_several_membrane_transport_proteins_including:_Escherichia_coli_citrate-proton_symporter_CitA_or_Cit_SWALL:CIT1_ECOLI_(SWALL:P07661)_(431_aa)_fasta_scores:_E():_2.5e-99,_62.16%_id_in_415_aa,_and_to_Ralstonia_solanacearum_probable_sugar_transporter_transmembrane_protein_rsc3059_or_rs06072_SWALL:Q8XUX4_(EMBL:AL646073)_(431_aa)_fasta_scores:_E():_6.4e-117,_71.92%_id_in_431_aa citrate-proton_symporter YP_109130.1 11 MSTASPAIQQESKARTVFRVVSGNFLEMYDFMVYGYYASAIAKTYFPSGNAFASLMLSLSVFGAGFLMRPVGAIVLGAYIDHHGRRKGLILTLALMALGTLTVATIPGYATIGVLAPILVLLGRLLQGFSAGVELGGVSVYLSEIATKGNKGFYTSWQSGSQQVAVVFAAFVGVLLNRALPVEQMTSWGWRIPFLIGCLIVPFLFLIRRSLKETDEFLAKRRRPSMGEIMKSMLENWGVVLAGMGMVIMTTVSFYMITAYTPTFGKEVLHLSAIDALVVTVCVGLSNLVWLPLSGALSDRIGRRPVLIAFTALTILTAYPAMQWLVGSPSFLRLLGVELWLSFLYGSYNGAMVVALTEVMPADVRTAGFSLAYSLATTIGGFTPAISTLLIHETGNKAAPGLWLGLAAICGLIATLVLYRSPEARNQYKTT beta_subgroup Burkholderia_pseudomallei_K96243 Burkholderia_pseudomallei_K96243 NC_006350 3054702..3055997 Holden,M.T.,_Titball,R.W.,_Peacock,S.J.,_Cerdeno-Tarraga,A.M.,_Atkins,T.,_Crossman,L.C.,_Pitt,T.,_Churcher,C.,_Mungall,K.,_Bentley,S.D.,_Sebaihia,M.,_Thomson,N.R.,_Bason,N.,_Beacham,I.R.,_Brooks,K.,_Brown,K.A.,_Brown,N.F.,_Challis,G.L.,_Cherevach,I.,_Chillingworth,T.,_Cronin,A.,_Crossett,B.,_Davis,P.,_DeShazer,D.,_Feltwell,T.,_Fraser,A.,_Hance,Z.,_Hauser,H.,_Holroyd,S.,_Jagels,K.,_Keith,K.E.,_Maddison,M.,_Moule,S.,_Price,C.,_Quail,M.A.,_Rabbinowitsch,E.,_Rutherford,K.,_Sanders,M.,_Simmonds,M.,_Songsivilai,S.,_Stevens,K.,_Tumapa,S.,_Vesaratchavest,M.,_Whitehead,S.,_Yeats,C.,_Barrell,B.G.,_Oyston,P.C._and_Parkhill,J. NA 0:1296 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_BX571965.COMPLETENESS:_full_length. NA 21-JAN-2012 Burkholderia_pseudomallei_K96243_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_pseudomallei_Q63RY7_BURPS.gb Pseudomonas_RNA_homology_group_II 53717639 Proc._Natl._Acad._Sci._U.S.A._101_(39),_14240-14245_(2004) NA NC_006350 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 15377794 1296 1 genomic_DNA NA K96243 NA Pseudomonas_pseudomallei_(Whitmore_1913)_Haynes_1957_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 272560 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_pseudomallei_group Genomic_plasticity_of_the_causative_agent_of_melioidosis,_Burkholderia_pseudomallei NA NC_006350.1 TCAAGTCGTCTTGTATTGATTGCGCGCTTCAGGCGACCGGTACAGCACGAGCGTCGCGATCAGCCCGCAGATCGCGGCGAGGCCGAGCCAGAGGCCCGGCGCCGCCTTGTTGCCGGTCTCGTGAATCAGCAGCGTCGAGATCGCCGGCGTGAAGCCGCCGATCGTCGTCGCGAGGCTGTAAGCGAGCGAGAAGCCCGCGGTGCGCACGTCGGCCGGCATCACCTCGGTCAGCGCGACGACCATCGCGCCGTTGTACGAGCCGTACAGGAACGACAGCCACAGCTCGACGCCCAACAGCCGCAGGAACGACGGCGAACCGACGAGCCACTGCATCGCCGGATACGCGGTGAGGATCGTGAGCGCGGTGAACGCGATCAGCACCGGGCGGCGGCCGATCCGATCGGACAGCGCGCCCGACAGCGGCAGCCAGACCAGGTTCGACAGCCCGACGCAAACGGTCACGACGAGCGCGTCGATCGCCGACAGATGCAGCACTTCCTTGCCGAAAGTCGGCGTGTACGCGGTGATCATGTAGAACGACACGGTCGTCATGATGACCATCCCCATGCCGGCCAGCACCACGCCCCAGTTCTCGAGCATCGACTTCATGATCTCGCCCATGCTCGGGCGGCGGCGCTTCGCGAGGAACTCGTCGGTCTCCTTCAGCGAGCGGCGGATCAGGAACAGGAACGGCACGATCAGGCAGCCGATCAGGAACGGGATGCGCCAGCCCCACGACGTCATTTGCTCGACAGGCAGCGCGCGGTTCAGCAGCACGCCGACGAACGCGGCGAACACCACGGCCACCTGCTGGCTGCCCGACTGCCACGACGTATAGAAGCCCTTGTTGCCCTTCGTCGCGATCTCGGACAGATACACCGATACGCCGCCCAGCTCGACGCCCGCCGAAAAACCCTGCAGCAGGCGGCCGAGCAGCACGAGAATCGGCGCGAGCACGCCGATCGTCGCGTAGCCCGGAATCGTCGCGACGGTCAGCGTGCCGAGCGCCATCAACGCGAGCGTCAGGATGAGGCCCTTGCGGCGGCCGTGATGGTCGATGTACGCGCCGAGCACGATCGCGCCGACGGGACGCATCAGAAAGCCCGCGCCGAACACCGACAGCGACAGCATCAGCGAGGCGAACGCGTTGCCGCTCGGGAAGTAGGTCTTGGCGATCGCGGACGCGTAGTAGCCGTAGACCATGAAGTCGTACATCTCCAGGAAGTTGCCGCTGACGACGCGGAACACGGTCCTGGCTTTGGATTCCTGCTGGATTGCGGGGGACGCGGTAGACAT > 291 BH160DRAFT_0158 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_reh:H16_B0877_4-hydroxybenzoate_transporter,_MFS-type,_AAHS_family major_facilitator_superfamily_MFS_1 EEA04626.1 11 MNTQHRASNARTLVLQDLINERRLSRFQVVTFLLCFAILVLDGYDTVVVGYIAPALKAHFGAAPAQLAPMFGAGLFGLTLGSFIFGPVADRFGRKPTLIASIAVFALFSLLSAGADSIGMLIVLRFLTGLGLGGAMPNAYTLAAEYCPDRLRSTLVAPIGCGIAVGGALGGLFASRMIGAFGWGSMLVLGGVLPLLLVVVLALWLPESVRYLIARGGKEAQARAILKRIVPDADLENVTITLEERRVQGLPIRQLLGPGIGGGTLLLWTTAFMALLVIYFLGNWLPILIQQSGVSFHNASLMTALYLTGNSLGAVLLGVLMDRMNPQYVLCGAFVCASISLASFGHLSGMPGLALLALFVTGVGTGGTMTGTNILSASYYATASRATGVAWTLGMGRVGSIVGSMVGGAMLAAHWEAKMIFGAVAVPVVIAAISVYVLAIYRSRHPATVTDAARAQIGSAAH beta_subgroup Burkholderia_sp._H160 Burkholderia_sp._H160 ABYL01000001 156499..157887 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Larimer,F.,_Land,M.L.,_Hauser,L._and_Tiedje,J. NA 0:1389 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4084419Source_DNA_and_Bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)This_project_is_being_labeled_as_Permanent_Draft._No_furthersequencing_is_planned_for_the_organism_at_this_time. NA 15-OCT-2008 Burkholderia_sp._H160_ctg00250,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_sp_B5WAQ8_9BURK.gb Pseudomonas_RNA_homology_group_II 209504481 Unpublished NA ABYL01000001 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1389 NA genomic_DNA NA H160 NA Burkholderia_sp._H160 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 516466 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Permanent_draft_sequence_of_Burkholderia_sp._H160 NA ABYL01000001.1 ATGAATACGCAACACCGGGCGAGCAATGCCCGCACGCTGGTCTTACAGGACCTGATCAATGAACGGCGGCTATCGCGGTTTCAGGTGGTCACGTTCCTGCTTTGCTTTGCGATTCTGGTACTTGATGGCTACGACACGGTGGTGGTCGGTTACATCGCGCCTGCGTTGAAGGCTCACTTTGGCGCGGCTCCCGCGCAGCTCGCACCGATGTTCGGCGCAGGTCTCTTCGGCCTCACGCTCGGCTCTTTTATCTTCGGTCCGGTCGCGGATCGCTTCGGACGCAAGCCGACGCTCATCGCATCTATCGCGGTGTTTGCGCTGTTCAGCCTGCTGTCCGCGGGGGCCGACTCGATCGGCATGCTGATCGTGCTGCGCTTCCTGACAGGCCTCGGGCTTGGCGGCGCGATGCCGAATGCGTATACGCTCGCGGCCGAATATTGCCCTGACCGTCTGCGCTCGACGCTGGTTGCGCCGATCGGCTGCGGTATCGCGGTGGGCGGCGCGCTGGGCGGGCTGTTCGCGTCGCGCATGATCGGCGCGTTCGGTTGGGGGTCGATGCTCGTACTCGGCGGCGTGCTTCCGCTCCTGCTTGTCGTGGTGCTCGCGCTCTGGCTGCCTGAATCCGTGCGCTACCTCATCGCGCGCGGCGGCAAAGAGGCGCAGGCCCGCGCGATTCTGAAACGGATCGTGCCCGACGCCGATCTCGAGAACGTCACCATTACGCTTGAAGAGCGGCGGGTGCAAGGCTTGCCGATCAGGCAACTGCTAGGCCCCGGTATCGGCGGCGGCACGCTGCTGCTCTGGACCACTGCGTTCATGGCGCTGCTTGTCATCTATTTCCTCGGCAACTGGCTGCCGATCCTGATCCAGCAAAGCGGCGTGTCGTTCCATAACGCTTCGTTGATGACGGCGCTTTATCTCACCGGCAACAGCCTTGGCGCGGTTTTGCTCGGCGTGCTGATGGATCGGATGAATCCGCAATACGTGCTGTGCGGTGCGTTCGTCTGTGCGTCGATCAGTCTCGCCTCGTTCGGTCATCTGTCCGGCATGCCCGGCCTGGCTTTGCTGGCGCTTTTCGTGACCGGGGTCGGCACCGGCGGCACGATGACCGGCACCAACATTCTGTCGGCGAGCTATTACGCGACCGCGAGCCGCGCGACGGGTGTGGCATGGACGCTTGGCATGGGACGCGTCGGCTCGATCGTTGGCTCGATGGTCGGCGGTGCGATGCTGGCCGCGCATTGGGAAGCGAAGATGATTTTCGGCGCTGTGGCGGTGCCGGTGGTGATCGCGGCGATCAGCGTTTATGTGCTGGCCATCTACCGCTCGCGTCATCCCGCGACGGTCACCGACGCCGCTCGCGCTCAGATCGGATCGGCCGCTCATTGA > 292 BCh11DRAFT_1402 PFAM:_General_substrate_transporter;_KEGG:_bxe:Bxe_A0668_major_facilitator_transporter General_substrate_transporter EFG72420.1 11 MATVGGQISHVPMTNEEKRVIFASSLGTVFEWYDFYLAGSLAAFISKSFFSGVNPTAGFIFTLLSFAAGFAVRPFGAIVFGRLGDLVGRKYTFLVTIVIMGLSTFLVGFLPGYAAIGIASPVIFIAMRMLQGLALGGEYGGAATYVAEHAPAGRRGFYTAWIQTTATLGLFLSLLVILGVRTLMGEDAFGAWGWRIPFVASIILLGVSVWIRLQLHESPVFERIKAEGKTSKAPLSEAFGQWKNLKVVILALIGLTAGQAVVWYTGQFYTLFFLTQTLKVDGSSANIMIAIALLIGTPFFLFFGSLSDRIGRKPIIMAGLLIAACTYFPLFKALAHYTNPALETATAKAPIVVIANPDECSFQFNPVGTSKFTSSCDIAKSALSKAGLNYENVAAPAGTLAEIKVGDTVVNTYDGKAADAKDRGKAFDTTLATTLKTAGYPPKADPSQINWPMSVVILTILVIYVTMVYGPIAAMLVEMFPTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAAKGNIYSGLWYPIVIALITFVIGMLFVKETKDSDIYARD beta_subgroup Burkholderia_sp._Ch1-1 Burkholderia_sp._Ch1-1 ADNR01000004 254989..256647 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Land,M.L.,_Hauser,L.,_Bradfield,C.,_Sheety,A.,_Cheng,S.,_Chain,P.,_Denef,V.,_Hickey,W.J._and_Woyke,T. NA 0:1659 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4086860Source_DNA_and_Organism_available_from_William_J._Hickey(Wjhickey@wisc.edu)Contacts:_William_J._Hickey_(Wjhickey@wisc.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Burkholderia_sp._Ch1-1GOLD_Stamp_ID_::_Gi03275Greengenes_ID_::_93571Oxygen_Requirement_::_FacultativeCell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileGram_Staining_::_gram-Biotic_Relationship_::_Free_livingHabitat_::_Soil##Metadata-END## NA 10-MAY-2010 Burkholderia_sp._Ch1-1_ctg00181,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_sp_D5NAI1_9BURK.gb Pseudomonas_RNA_homology_group_II 295892401 Unpublished NA ADNR01000004 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1659 NA genomic_DNA NA Ch1-1 NA Burkholderia_sp._Ch1-1 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 243261 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia The_draft_genome_of_Burkholderia_sp._Ch1-1 NA ADNR01000004.1 ATGGCTACCGTTGGCGGGCAAATCTCGCACGTGCCGATGACGAACGAAGAGAAGCGGGTAATCTTCGCCTCGTCGCTGGGTACGGTTTTCGAGTGGTACGACTTCTATCTGGCCGGTTCGCTTGCGGCCTTCATCAGCAAGAGCTTCTTTTCCGGCGTCAATCCGACCGCCGGCTTCATCTTCACGCTGCTCAGCTTCGCCGCCGGCTTCGCGGTCCGGCCGTTCGGCGCGATCGTGTTCGGGCGGCTCGGCGATCTGGTCGGACGCAAGTACACGTTCCTCGTGACGATCGTGATCATGGGTCTGTCGACGTTCCTCGTCGGTTTTCTGCCGGGCTACGCGGCGATCGGCATTGCTTCGCCGGTGATCTTCATCGCCATGCGGATGCTGCAGGGCCTCGCGCTCGGCGGCGAATACGGCGGCGCGGCCACCTACGTGGCCGAACATGCGCCGGCGGGACGCCGCGGCTTCTATACGGCCTGGATCCAGACGACCGCCACGCTCGGCCTGTTCCTGTCGCTGCTGGTGATTCTCGGCGTGCGCACGCTAATGGGTGAAGACGCGTTTGGTGCCTGGGGCTGGCGCATTCCGTTTGTCGCGTCGATCATCCTGCTGGGCGTGTCGGTGTGGATTCGTCTGCAACTGCATGAATCGCCGGTGTTCGAGCGCATCAAGGCCGAAGGCAAGACCTCCAAGGCGCCGCTGTCCGAAGCGTTCGGCCAGTGGAAGAACCTGAAAGTCGTGATTCTCGCGCTGATCGGGCTGACCGCCGGCCAGGCCGTGGTCTGGTACACGGGCCAGTTCTACACGCTGTTCTTCCTGACGCAGACGCTGAAGGTGGACGGCAGCAGCGCCAACATCATGATCGCCATCGCGCTCCTGATCGGCACGCCGTTCTTCCTGTTCTTCGGCTCGCTGTCGGATCGTATCGGCCGCAAGCCGATCATCATGGCCGGCCTGCTGATCGCCGCATGCACGTACTTCCCGCTGTTCAAGGCGCTGGCGCACTACACCAACCCGGCGCTGGAAACCGCAACGGCGAAGGCGCCGATCGTCGTGATCGCGAATCCGGACGAGTGCTCGTTCCAGTTCAACCCGGTCGGCACCTCGAAGTTCACGAGTTCCTGCGACATCGCCAAGAGCGCGCTCTCGAAGGCCGGCCTGAACTACGAGAACGTCGCCGCGCCGGCGGGCACGCTCGCGGAGATCAAGGTCGGCGATACGGTGGTCAACACGTATGACGGCAAGGCCGCCGACGCCAAGGATCGGGGCAAGGCGTTCGACACGACCCTCGCGACGACGCTGAAGACCGCGGGTTATCCGCCAAAGGCCGATCCGTCGCAGATCAACTGGCCGATGAGCGTGGTGATCCTGACGATCCTCGTGATCTACGTGACGATGGTCTACGGTCCGATCGCGGCCATGCTGGTGGAAATGTTCCCGACGCGCATTCGCTACACCTCGATGTCGCTGCCGTATCACATCGGCAATGGCTGGTTCGGCGGCTTCCTGCCGGCCACCGCGTTCGCGATCGTGGCGGCGAAGGGCAATATCTACTCCGGGCTGTGGTATCCGATCGTGATCGCGCTCATTACCTTCGTGATTGGCATGCTGTTCGTCAAGGAAACCAAGGACTCGGACATCTACGCGAGGGACTGA > 293 BCh11DRAFT_5637 PFAM:_major_facilitator_superfamily_MFS_1;_KEGG:_bxe:Bxe_A4087_major_facilitator_superfamily_metabolite/H(+)_symporter major_facilitator_superfamily_MFS_1 EFG68022.1 11 MANGIVNSGARLDRLPIASFHWKILGLISAGAFLDAFDIYLAAGALGAMVKAGFSDLKLNALFISVTFLGMLIGAGLAGYLGDRFGRRSSYQTNLLIFGIASIAACFVPNMMWLIVLRLIMGVGLGAELVVAAGTLCEFIPPASRGRWTALLALIINSGLLVSTAVGYVVIPHLGWRYMFAIAGIGAIIVWVLRHRMPESPRWLESVGRSDEAEATVSTIEHEVQRQKGPLPPVERIENLEVPKAPFSALFSHAMLGRTLVAILTAVAVNISVYGFVAWLPTFFVKEGLTIVQSLGFTTLMAFGAPGGALIGFLCADRVGRARGLVIFAIATIVVGFIYPNMHAGWAISSVGFVLVTCIYTVTTLGLFAYIPELFPTELRLRGTGTAGVCGRAASMTTPYLAVVLYNSFGVSGVLAMVSGVLALLVLGILLLRVETNQHALERISPSLDTDSDPMPATQQG beta_subgroup Burkholderia_sp._Ch1-1 Burkholderia_sp._Ch1-1 ADNR01000035 51413..52798 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Land,M.L.,_Hauser,L.,_Bradfield,C.,_Sheety,A.,_Cheng,S.,_Chain,P.,_Denef,V.,_Hickey,W.J._and_Woyke,T. NA 0:1386 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4086860Source_DNA_and_Organism_available_from_William_J._Hickey(Wjhickey@wisc.edu)Contacts:_William_J._Hickey_(Wjhickey@wisc.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Burkholderia_sp._Ch1-1GOLD_Stamp_ID_::_Gi03275Greengenes_ID_::_93571Oxygen_Requirement_::_FacultativeCell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileGram_Staining_::_gram-Biotic_Relationship_::_Free_livingHabitat_::_Soil##Metadata-END## NA 10-MAY-2010 Burkholderia_sp._Ch1-1_ctg00139,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_sp_D5NML3_9BURK.gb Pseudomonas_RNA_homology_group_II 295888158 Unpublished NA ADNR01000035 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1386 NA genomic_DNA NA Ch1-1 NA Burkholderia_sp._Ch1-1 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 243261 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia The_draft_genome_of_Burkholderia_sp._Ch1-1 NA ADNR01000035.1 GTGGCTAACGGTATCGTCAACTCGGGCGCGCGACTCGATCGCCTGCCCATCGCGTCCTTTCACTGGAAGATTCTCGGGCTCATCAGCGCGGGCGCCTTTCTCGACGCCTTCGACATCTATCTCGCGGCCGGCGCGCTCGGCGCGATGGTGAAAGCGGGCTTTTCGGATCTGAAGCTGAACGCGCTGTTCATCTCGGTGACGTTTCTCGGCATGCTGATCGGCGCAGGCCTTGCCGGTTATCTCGGCGACCGCTTCGGCCGCCGCTCGTCGTACCAGACCAATCTGCTGATCTTCGGTATTGCGTCGATTGCCGCGTGCTTCGTGCCGAACATGATGTGGCTGATCGTGCTGCGGCTGATCATGGGCGTCGGCCTCGGCGCCGAACTGGTGGTCGCGGCCGGCACCTTGTGCGAATTCATCCCGCCCGCATCGCGCGGACGCTGGACGGCCTTGCTCGCGCTCATCATCAATTCCGGCCTGCTGGTGTCGACGGCGGTGGGTTACGTGGTGATTCCGCATCTGGGCTGGCGCTATATGTTCGCGATTGCCGGCATCGGCGCGATTATCGTGTGGGTGCTGCGGCACCGTATGCCGGAGTCGCCGCGCTGGCTCGAATCGGTCGGGCGCAGCGACGAAGCCGAGGCCACCGTTTCCACCATCGAGCATGAGGTGCAGCGACAGAAAGGTCCGTTGCCGCCGGTCGAGCGCATCGAAAATCTGGAAGTGCCGAAAGCGCCGTTCTCCGCATTGTTTTCTCACGCCATGCTCGGCCGCACGCTGGTCGCCATTCTCACGGCGGTTGCCGTGAATATTTCGGTGTACGGCTTTGTTGCATGGCTGCCCACCTTCTTCGTCAAGGAAGGTCTCACCATCGTGCAATCGCTCGGCTTTACGACGCTGATGGCGTTCGGCGCACCGGGCGGCGCGTTGATCGGCTTTCTCTGCGCGGATCGTGTGGGCCGTGCGCGTGGACTGGTGATCTTCGCGATCGCCACGATCGTGGTCGGCTTCATCTATCCGAACATGCATGCGGGTTGGGCGATCAGCAGTGTCGGCTTCGTGCTCGTCACCTGCATCTATACGGTCACTACGCTCGGCCTGTTCGCCTACATCCCCGAGCTCTTTCCGACCGAACTGCGCCTGCGCGGCACGGGCACGGCGGGCGTATGCGGCCGCGCTGCCTCGATGACCACGCCGTATCTCGCGGTGGTGCTCTACAACTCGTTCGGTGTATCCGGTGTGCTGGCGATGGTGAGCGGTGTTCTCGCGCTGCTGGTGCTCGGCATTCTGCTGCTGCGCGTGGAAACCAATCAGCACGCGCTCGAACGGATCTCGCCGAGCCTCGACACCGATTCCGATCCGATGCCCGCTACCCAGCAAGGTTAA > 294 BC1002_2559 PFAM:_general_substrate_transporter;_KEGG:_bxe:Bxe_A0668_major_facilitator_transporter general_substrate_transporter YP_003606119.1 11 MATVGGQLSHAPMTRDEKRVIFASSLGTVFEWYDFYLAGSLAAFISKSFFSGVNPTAAFIFTLLSFAAGFAVRPFGAVVFGRLGDMVGRKYTFLITIIIMGLSTFLVGFLPGYAAIGIASPVIFIAMRLLQGLALGGEYGGAATYVAEHAPANRRGFYTAWIQTTATLGLFLSLLVILGVRTFMGEDAFGAWGWRIPFVLSILLLAVSVWIRLQLHESPVFERIKAEGKTSKAPLSEAFGQWKNLKVVILALLGLTAGQAVVWYTGQFYTLFFLTQTLKVDGTSANIMIALALLIGTPFFLFFGSLSDRIGRKPIIMAGLLIAALTYFPLFKALTHYTNPALEAATLKSPIVVIADPGECSFQFNPVGTARFVTSCDIAKGALSRAGLNYDNVAAPAGTIAQIRVGDTVVNTFDGRAPDAKEQAKTFEKTLAATLKAAGYPPKADPAQINWPMSVVILTILVIYVTMVYGPIAAMLVEMFPTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAARGNIYSGLWYPIIIAVITFVIGMLFVRETKDSDIYAKD beta_subgroup Burkholderia_sp._CCGE1002 Burkholderia_sp._CCGE1002 NC_014117 2851724..2853382 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ovchinnikova,G.,_Martinez-Romero,E.,_Hernandez,M.A.R.,_Tiedje,J.M._and_Woyke,T. NA 0:1659 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002013.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4085555Source_DNA_and_organism_available_from_Esperanza_Martinez-Romero(Centro_de_Ciencias_Genomicas--http://ccg.unam.mx)Contacts:_James_M._Tiedje_(tiedjej@msu.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLBurkholderia_sp._CCGE1002_is_a_mimosa_occidentalis_nodule_isolatefrom_Nayarit,_Tepic,_Mexico._Site_of_isolation_is_Latitude:_21.604,Longitude:_-104.952._Additionally,_it_forms_nodules_in_Phaseolusvulgaris_beans._It_contributes_to_Nitrogen_fixation_and_CO2fixation_in_the_tropics.Finished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Burkholderia_sp._CCGE1002GOLD_Stamp_ID_::_Gi03922Oxygen_Requirement_::_FacultativeCell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileGram_Staining_::_gram-Biotic_Relationship_::_Free_livingHabitat_::_Host,_Rhizosphere,_Rhizosphere-colonizing##Metadata-END##COMPLETENESS:_full_length. NA 26-JAN-2012 Burkholderia_sp._CCGE1002_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_sp_D5WCK5_BURSC.gb Pseudomonas_RNA_homology_group_II 295675101 Unpublished NA NC_014117 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1659 1 genomic_DNA NA CCGE1002 NA Burkholderia_sp._CCGE1002 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 640511 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_sequence_of_chromosome_1_of_Burkholderia_sp._CCGE1002 NA NC_014117.1 ATGGCTACCGTTGGCGGGCAACTCTCGCACGCGCCGATGACGCGCGATGAGAAGCGGGTGATCTTCGCATCGTCGCTGGGTACGGTTTTCGAGTGGTACGACTTTTATCTGGCCGGCTCGCTTGCGGCCTTCATCAGCAAGAGCTTCTTTTCCGGCGTCAATCCGACCGCGGCGTTCATTTTCACGCTGCTCAGCTTCGCCGCGGGCTTCGCGGTGCGGCCGTTCGGCGCGGTCGTATTCGGACGGCTCGGCGACATGGTCGGGCGCAAGTACACGTTCCTGATCACGATCATCATCATGGGCCTGTCGACGTTCCTCGTCGGCTTCCTGCCGGGCTATGCGGCGATCGGCATCGCTTCGCCGGTGATCTTCATCGCGATGCGTCTGCTGCAGGGTCTCGCGCTCGGCGGCGAGTACGGCGGCGCCGCGACCTACGTGGCCGAACACGCGCCGGCGAACCGCCGCGGCTTCTACACCGCGTGGATCCAGACCACCGCGACGCTCGGCCTGTTCCTGTCGCTGCTCGTGATCCTCGGCGTGCGCACTTTCATGGGCGAAGACGCGTTCGGCGCCTGGGGCTGGCGCATCCCGTTCGTCCTGTCGATCCTGCTGCTCGCGGTGTCGGTATGGATTCGCCTGCAACTGCATGAGTCGCCGGTGTTCGAGCGCATCAAGGCCGAGGGCAAGACCTCGAAGGCGCCGCTCTCCGAAGCGTTCGGCCAGTGGAAGAACCTGAAGGTCGTGATTCTCGCGCTGCTCGGCCTGACGGCCGGCCAGGCTGTCGTGTGGTACACGGGCCAGTTCTACACGCTGTTCTTCCTCACGCAGACGCTCAAGGTCGACGGCACGAGCGCCAACATCATGATTGCGCTCGCGCTGCTGATCGGCACACCGTTCTTCCTGTTCTTCGGGTCGCTGTCGGATCGCATTGGCCGCAAGCCGATCATCATGGCCGGTCTGCTGATCGCCGCGCTGACGTACTTCCCGCTGTTCAAGGCGCTCACGCACTACACGAACCCGGCGCTCGAAGCCGCAACGTTGAAGTCGCCGATCGTCGTGATCGCCGATCCTGGCGAGTGCTCGTTCCAGTTCAACCCGGTGGGCACGGCTAGGTTCGTGACCTCGTGCGATATCGCGAAGGGCGCGCTGTCGCGAGCCGGCCTGAACTACGACAACGTCGCGGCACCGGCCGGCACAATCGCGCAGATCCGCGTGGGTGATACGGTCGTCAACACGTTCGACGGCCGCGCCCCCGACGCGAAGGAGCAAGCCAAGACGTTCGAGAAGACGCTCGCCGCGACGCTGAAGGCTGCCGGCTACCCGCCGAAGGCCGATCCGGCGCAGATCAACTGGCCGATGAGCGTCGTGATCCTGACGATCCTCGTGATCTACGTGACGATGGTCTACGGGCCGATCGCGGCGATGCTGGTCGAGATGTTCCCGACGCGCATCCGTTATACGTCGATGTCGCTGCCGTATCACATCGGCAATGGCTGGTTCGGCGGCTTCCTGCCGGCGACCGCGTTCGCGATCGTCGCGGCGAGGGGCAACATCTACTCGGGGCTCTGGTATCCGATCATCATCGCGGTGATCACCTTCGTGATCGGCATGCTGTTCGTGCGTGAGACCAAGGACTCGGATATCTACGCGAAGGATTGA > 295 BC1002_0583 PFAM:_major_facilitator_superfamily_MFS_1;_KEGG:_bpy:Bphyt_0808_major_facilitator_superfamily_MFS_1 major_facilitator_superfamily_protein YP_003604195.1 11 MKSSNQAMYATALGEAAGALDASPTDAGADAAATDRAGAIALDGARISARLDRLPATRTIWQLVMLLSFGMFFELYDLMYSGYIAPGLVHSGLLTATTRGLFGTSGVASFIAALFAGLFIGTAACGFLADRFGRRAIFTWSLLWYTAANVVMAFQHTALGLNCWRFIAGIGIGVEIVTIGTYISELVPKHIRGRASACSQAVGFCAVPIVAFLSYLLVPQRVFGLDGWRVVVLIGAIGAIVVWWIRRGLPESPRWLAQKGRLDEADAVMTRLEARVAREYQRQCGRPLPEPALPEPVRARAAFRDLLVPPYRKRTLMLIIFHVFQTMGYYGFANWIPTLLIKQGITVTTSLMYASIIAIAAPLGPLLGLLIADRFERKSVIICMAAVNVVCGLAFSQARETVLLVSLGVCLVLAGNIISYSYHAYQAELFPTGIRARAVGFVYSWSRISAMFSAFVIAACLGRFGVNGVFVFISGAMAIVMVAIGTLGPKTRDVALEDLSK beta_subgroup Burkholderia_sp._CCGE1002 Burkholderia_sp._CCGE1002 NC_014117 645058..646563 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ovchinnikova,G.,_Martinez-Romero,E.,_Hernandez,M.A.R.,_Tiedje,J.M._and_Woyke,T. NA 0:1506 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002013.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4085555Source_DNA_and_organism_available_from_Esperanza_Martinez-Romero(Centro_de_Ciencias_Genomicas--http://ccg.unam.mx)Contacts:_James_M._Tiedje_(tiedjej@msu.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLBurkholderia_sp._CCGE1002_is_a_mimosa_occidentalis_nodule_isolatefrom_Nayarit,_Tepic,_Mexico._Site_of_isolation_is_Latitude:_21.604,Longitude:_-104.952._Additionally,_it_forms_nodules_in_Phaseolusvulgaris_beans._It_contributes_to_Nitrogen_fixation_and_CO2fixation_in_the_tropics.Finished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Burkholderia_sp._CCGE1002GOLD_Stamp_ID_::_Gi03922Oxygen_Requirement_::_FacultativeCell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileGram_Staining_::_gram-Biotic_Relationship_::_Free_livingHabitat_::_Host,_Rhizosphere,_Rhizosphere-colonizing##Metadata-END##COMPLETENESS:_full_length. NA 26-JAN-2012 Burkholderia_sp._CCGE1002_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_sp_D5WCQ5_BURSC.gb Pseudomonas_RNA_homology_group_II 295675101 Unpublished NA NC_014117 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1506 1 genomic_DNA NA CCGE1002 NA Burkholderia_sp._CCGE1002 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 640511 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_sequence_of_chromosome_1_of_Burkholderia_sp._CCGE1002 NA NC_014117.1 ATGAAATCGTCGAATCAGGCGATGTACGCCACTGCGCTCGGCGAGGCGGCCGGCGCGCTCGATGCCTCACCCACGGACGCAGGCGCCGATGCGGCAGCGACGGACCGCGCCGGCGCGATCGCGCTCGATGGCGCGCGCATTTCCGCGCGGCTCGACCGGCTGCCCGCCACCCGCACGATCTGGCAGCTGGTGATGCTGCTGAGCTTCGGCATGTTCTTCGAACTCTACGACCTGATGTACTCCGGCTATATCGCGCCGGGCCTCGTGCATAGCGGCCTGCTCACCGCCACGACGCGCGGTCTGTTCGGCACGAGCGGCGTCGCGAGTTTCATCGCCGCGCTGTTCGCGGGTCTATTCATCGGCACGGCGGCGTGCGGCTTTCTCGCCGACCGCTTCGGCCGCCGCGCGATCTTCACGTGGTCGCTGCTGTGGTACACCGCGGCCAACGTCGTAATGGCGTTCCAGCACACGGCGCTCGGCTTGAACTGCTGGCGCTTTATCGCGGGGATCGGCATCGGCGTCGAGATCGTCACGATCGGCACGTATATCTCCGAGCTCGTGCCGAAGCACATTCGCGGGCGCGCTTCAGCGTGCTCGCAGGCGGTCGGCTTCTGCGCGGTGCCGATCGTCGCGTTCCTGTCTTATCTGCTGGTGCCGCAACGCGTGTTCGGCCTCGACGGCTGGCGTGTGGTCGTGCTGATCGGCGCGATTGGCGCGATCGTCGTGTGGTGGATTCGCCGCGGCTTGCCGGAGAGCCCGCGCTGGCTCGCGCAAAAGGGCCGGCTCGACGAAGCCGACGCGGTGATGACGCGTCTCGAAGCACGCGTCGCGCGCGAGTACCAGCGTCAATGCGGCCGGCCGCTGCCCGAGCCCGCGCTGCCCGAGCCGGTGCGCGCGCGGGCGGCGTTTCGCGATCTGCTGGTGCCGCCGTATCGCAAGCGCACGCTGATGCTGATCATCTTTCACGTGTTCCAGACGATGGGCTACTACGGCTTCGCGAACTGGATTCCGACGCTGCTGATCAAGCAAGGCATCACGGTGACGACGAGCCTGATGTACGCGAGCATTATCGCGATTGCGGCGCCGCTCGGGCCGTTGCTGGGATTGCTGATCGCCGATCGCTTCGAGCGCAAGAGCGTCATCATCTGCATGGCCGCGGTCAACGTCGTGTGCGGACTCGCGTTCAGCCAGGCGCGCGAGACGGTGCTGCTCGTGAGTCTAGGCGTGTGCCTCGTGCTCGCGGGCAACATCATTTCGTACAGCTATCACGCGTACCAGGCCGAGCTGTTTCCGACCGGCATCCGGGCGCGCGCGGTCGGCTTCGTTTATTCGTGGAGCCGGATTTCGGCGATGTTCTCGGCGTTCGTGATCGCCGCCTGCCTCGGCCGCTTCGGCGTGAACGGCGTGTTCGTGTTCATCTCGGGGGCGATGGCGATCGTCATGGTCGCGATCGGTACGCTGGGTCCGAAGACGCGCGATGTCGCGCTCGAGGACCTTTCGAAGTAG > 296 BC1002_4984 PFAM:_general_substrate_transporter;_KEGG:_bph:Bphy_5847_major_facilitator_transporter general_substrate_transporter YP_003608444.1 11 MAATQSGAMPLSEEEARRQLRRAVIASTIGTTIEWYDFFLYSTVTGLVFAKLFFPESDPLVGTLQAFLIYAVGFVARPVGAAIFGHYGDRIGRKATLIVTLLLMGLATFAVGFVPTYASIGIWGAIALTALRFIQGVGVGGEWGGSVLMSMEWARTNKHRGFVASWPQFGVPAGLFVANLVVLATSQISGSAFLTWGWRVPFFLSIALVGIGLYIRLSILETPVFAKLLAERRIEKAPMREVLRRQPKDILLSALARMAEQAPFYIFTAFIFTYGVMSLGVTRDLLLTAVLAASVLEFFTIPLFGHVSDLIGRRRMYVIGAAAVGLFGFLYFFMVGTHNPGWIFAAIVLSLVPHAMMYGPQAALIAESFTGRLRYSGASMGYQLASVIAGGPAPLIATALYAYFHSGFAVAWYVFACAVISVAAAMRLGDYTNKDISREYDDVHALHDHGHAT beta_subgroup Burkholderia_sp._CCGE1002 Burkholderia_sp._CCGE1002 NC_014118 1928213..1929574 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ovchinnikova,G.,_Martinez-Romero,E.,_Hernandez,M.A.R.,_Tiedje,J.M._and_Woyke,T. NA 0:1362 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002014.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4085555Source_DNA_and_organism_available_from_Esperanza_Martinez-Romero(Centro_de_Ciencias_Genomicas--http://ccg.unam.mx)Contacts:_James_M._Tiedje_(tiedjej@msu.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLBurkholderia_sp._CCGE1002_is_a_mimosa_occidentalis_nodule_isolatefrom_Nayarit,_Tepic,_Mexico._Site_of_isolation_is_Latitude:_21.604,Longitude:_-104.952._Additionally,_it_forms_nodules_in_Phaseolusvulgaris_beans._It_contributes_to_nitrogen_fixation_and_CO2fixation_in_the_tropics.Finished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Burkholderia_sp._CCGE1002GOLD_Stamp_ID_::_Gi03922Oxygen_Requirement_::_Facultativecell_Shape_::_Rod-shapedMotility_::_Motilesporulation_::_NonsporulatingTemperature_Range_::_MesophileGram_Staining_::_gram-Biotic_Relationship_::_Free_livingHabitat_::_Host,_Rhizosphere,_Rhizosphere-colonizing##Metadata-END##COMPLETENESS:_full_length. NA 26-JAN-2012 Burkholderia_sp._CCGE1002_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_sp_D5WDY0_BURSC.gb Pseudomonas_RNA_homology_group_II 295698848 Unpublished NA NC_014118 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1362 2 genomic_DNA NA CCGE1002 NA Burkholderia_sp._CCGE1002 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 640511 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_sequence_of_chromosome2_of_Burkholderia_sp._CCGE1002 NA NC_014118.1 TCACGTGGCATGTCCGTGGTCATGCAATGCATGCACGTCGTCGTATTCGCGCGAAATGTCCTTATTCGTGTAATCGCCCAGTCGCATAGCGGCGGCCACGCTAATCACCGCACACGCGAAGACATACCACGCCACCGCGAATCCAGAATGGAAGTAGGCATAAAGCGCGGTTGCAATCAACGGTGCCGGACCGCCAGCGATGACGGAAGCCAACTGGTATCCCATCGACGCGCCGCTGTAGCGCAAGCGCCCCGTGAACGATTCGGCGATCAACGCGGCTTGGGGACCGTACATCATTGCGTGCGGCACCAGCGAAAGCACGATGGCCGCGAAGATCCATCCGGGGTTATGAGTTCCGACCATGAAGAAGTACAGGAAACCGAATAGCCCGACAGCAGCGGCACCGATCACATACATGCGTCGACGTCCGATCAGATCGGACACGTGACCAAACAGCGGAATCGTGAAGAATTCCAGCACCGACGCGGCCAGCACCGCCGTGAGTAACAGATCACGTGTGACGCCCAGACTCATCACACCATAGGTGAAGATAAAGGCCGTGAAAATATAGAAAGGCGCCTGTTCGGCCATACGCGCAAGAGCCGATAGGAGAATGTCTTTCGGCTGCCGGCGTAGCACTTCACGCATCGGCGCCTTTTCGATCCTGCGCTCAGCGAGGAGCTTCGCGAAGACCGGCGTCTCGAGAATACTCAAGCGGATATAAAGGCCGATCCCGACCAGCGCAATACTGAGGAAAAACGGTACCCGCCAGCCCCACGTGAGAAATGCGCTGCCGGAGATCTGACTCGTGGCCAGCACCACCAGATTCGCGACGAACAATCCCGCCGGTACGCCGAACTGCGGCCACGACGCGACGAAACCGCGATGCTTGTTGGTGCGCGCCCATTCCATCGACATCAGCACCGAACCGCCCCACTCGCCGCCAACGCCCACACCCTGAATGAAGCGCAGCGCCGTGAGCGCAATGGCCCCCCAGATGCCGATCGACGCGTAGGTCGGAACAAAGCCGACGGCGAATGTCGCGAGTCCCATCAGCAATAGCGTGACAATCAACGTTGCTTTACGTCCGATGCGATCGCCATAGTGACCAAAAATCGCCGCACCCACCGGCCGCGCGACAAAGCCGACGGCGTAAATCAGAAAAGCCTGGAGTGTGCCGACGAGCGGGTCCGATTCAGGAAAAAACAGCTTCGCGAATACCAGACCAGTGACCGTGCTATACAGGAAGAAGTCATACCATTCGATCGTGGTACCAATCGTGCTGGCGATGACAGCGCGGCGCAACTGGCGCCGTGCCTCCTCTTCGGAGAGGGGCATAGCCCCAGATTGCGTGGCAGCCAT > 297 BC1003_1846 TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_KEGG:_bpy:Bphyt_2254_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS) metabolite/H+_symporter,_major_facilitator_superfamily_(MFS) YP_003907103.1 11 MTDLTDQSVASAHDTRRRIFAIVGASSGNLVEWFDFYVYSFCALYFAPAFFPSGNTTTQLLNTAGVFAAGFLMRPIGGWFFGRLADKHGRRTAMMVSVFMMCGGSLVIAVLPTYAQIGALAPALLLVARLFQGLSVGGEYGTSATYMSEVALKGRRGFFASFQYVTLIGGQLCALLVLVILQQTLSNAELKAWGWRVPFVIGAIAALVALYLRKSLDETTTAATRQRKEAGTLRGLWQHRVAFLTVLGFTAGGSLIFYTFTTYMQKYLVNTAGMNAKTASNVMTAALFVYMLLQPLFGALSDRIGRRNSMLCFGLFATIGTVPLLHALKDVTSPYAAFALVVLALAIVSFYTSISGLIKAEMFPPEVRALGVGLSYAVANAIFGGSAEYVALWLKSVGSETMFYWYVTFLCALAGLVALRMRDPSKEGYLRNEP beta_subgroup Burkholderia_sp._CCGE1003 Burkholderia_sp._CCGE1003 NC_014539 2131345..2132649 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Daligault,H.,_Davenport,K.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Land,M.,_Hauser,L.,_Jeffries,C.,_Kyrpides,N.,_Ivanova,N.,_Ovchinnikova,G.,_Martinez-Romero,E.,_Rogel,M.A.,_Auchtung,J.,_Tiedje,J.M._and_Woyke,T. NA 0:1305 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002217.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4085515Source_DNA_and_organism_available_from_James_M._Tiedje(tiedjej@msu.edu)Contacts:_James_M._Tiedje_(tiedjej@msu.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Burkholderia_sp._CCGE1003collection_date_::_Missinglat_lon_::_Missingdepth_::_Missingalt_elev_::_Missingcountry_::_Missingenvironment_::_Host,_Rhizosphere,_Rhizosphere-colonizingnum_replicons_::_2ref_biomaterial_::_Missingbiotic_relationship_::_Free_livingtrophic_level_::_Missingrel_to_oxygen_::_Facultativeisol_growth_condt_::_Missingsequencing_meth_::_WGSassembly_::_Newbler_v._2.3_(pre-release)finishing_strategy_::_FinishedGOLD_Stamp_ID_::_Gi03923Funding_Program_::_DOE-CSP_2007Cell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileGram_Staining_::_Gram-##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_FinishedAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_30xSequencing_Technology_::_454/Illumina##Genome-Assembly-Data-END##COMPLETENESS:_full_length. NA 02-FEB-2012 Burkholderia_sp._CCGE1003_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_sp_E1T9C9_BURSG.gb Pseudomonas_RNA_homology_group_II 307728076 Unpublished NA NC_014539 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1305 1 genomic_DNA NA CCGE1003 NA Burkholderia_sp._CCGE1003 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 640512 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Complete_sequence_of_chromosome1_of_Burkholderia_sp._CCGE1003 NA NC_014539.1 TCAAGGTTCGTTGCGCAGATACCCTTCCTTCGACGGATCGCGCATGCGCAGCGCAACGAGGCCCGCGAGCGCACAGAGGAAGGTCACGTACCAGTAGAACATCGTCTCGCTGCCGACCGACTTGAGCCACAGCGCTACGTACTCCGCCGAGCCGCCGAAGATCGCGTTGGCCACCGCATACGAGAGCCCCACGCCGAGCGCGCGCACTTCCGGCGGGAACATTTCCGCTTTGATCAGGCCGCTGATCGACGTGTAGAAGCTGACAATGGCAAGCGCCAGCACGACGAGCGCGAATGCTGCATACGGGCTCGTGACGTCTTTGAGCGCATGCAGCAGCGGCACCGTGCCGATGGTCGCGAAAAGGCCAAAGCACAGCATGGAGTTTCGGCGGCCAATGCGGTCCGACAACGCGCCGAACAGCGGCTGAAGCAACATATACACGAAGAGCGCGGCGGTCATCACGTTGCTCGCGGTCTTCGCGTTCATGCCCGCCGTGTTCACCAGATATTTCTGCATATACGTGGTGAACGTGTAGAAGATCAGCGAGCCGCCGGCCGTGAAGCCCAGCACCGTCAGAAACGCGACGCGATGCTGCCACAAACCGCGCAGCGTGCCCGCTTCCTTGCGCTGACGCGTCGCGGCGGTGGTGGTTTCATCGAGCGATTTACGCAGATAGAGCGCGACCAGCGCAGCAATTGCGCCGATGACAAACGGCACGCGCCAGCCCCATGCCTTCAGTTCGGCATTGCTGAGCGTCTGTTGCAGGATCACCAGCACGAGCAGCGCGCACAACTGGCCGCCGATCAGCGTCACGTACTGGAACGACGCGAAAAAGCCGCGCCGCCCTTTGAGCGCGACTTCACTCATGTAAGTGGCACTCGTGCCGTATTCGCCGCCAACCGAGAGGCCCTGGAACAGCCGCGCGACCAGCAGCAGCGCGGGCGCCAGCGCGCCGATCTGCGCATATGTCGGCAGCACGGCGATGACCAGCGAGCCGCCGCACATCATGAACACCGACACCATCATCGCGGTGCGGCGGCCGTGCTTGTCGGCGAGGCGGCCGAAGAACCAGCCGCCGATGGGCCGCATCAGAAAACCCGCCGCGAACACGCCGGCCGTGTTCAGCAACTGCGTGGTGGTGTTGCCGCTCGGAAAGAAGGCTGGCGCGAAATACAACGCACAGAACGAATAGACATAGAAGTCGAACCACTCGACGAGATTGCCTGAGGACGCACCGACAATCGCGAAAATGCGACGCCGTGTGTCGTGGGCGGAGGCCACGCTTTGGTCTGTGAGGTCGGTCAT > 298 Bcep18194_B1015 NA major_facilitator_transporter YP_371773.1 11 MRDSRRNSRHRQVVAAVVGNTLEWYDFIVYGFFSGIIARLFFPAESQYASLLMSLATFGVGFFMRPVGGILLGLYADRKGRKAAMQLIIFLMTLSIALITFAPSYAAIGPAAPVLIVVARLLQGFATGGEYASATAFLVESAPENRRGLYGSWQLIGQCLAVFSGAAMGAWATQSLSEAALHSWGWRVPFALGLLIGPVGLWIRRHMEETEAFLDASKSTVEPPASVSGVLRDNLRGVLVSMGQTITGTAVFYVMLVNMPTFVHKTFGLPLDQVFKVQMAAVALLTVTIPFAALVSDRIGRRPVLIAGSLALLTVTYPLFTWLAAAPGIGRLLVMQLVICTIIGICYGPAPTTLAEQFATRSRSTGIALAYNVAVMVFGGFAPFIVTWLTHASGSPVAPAWYVLFAASFGLLASVFMHDGAPCVLARRQFQGEPVSAK beta_subgroup Burkholderia_sp._383 Burkholderia_sp._383 NC_007511 1142130..1143446 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Kyrpides,N.,_Lykidis,A._and_Richardson,P. NA 0:1317 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000152.URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Jim_Tiedje(tiedjej@pilot.msu.edu)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LLNLQuality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFContacts:_Paul_Richardson_(microbes@cuba.jgi-psf.org)Finished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.COMPLETENESS:_full_length. NA 21-JAN-2012 Burkholderia_sp._383_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_sp_Q398I2_BURS3.gb Pseudomonas_RNA_homology_group_II 78060853 Unpublished NA NC_007511 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1317 2 genomic_DNA NA 383 NA Burkholderia_sp._383 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 269483 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome_2_of_Burkholderia_sp._383 NA NC_007511.1 ATGCGCGACTCACGTCGGAACTCGCGGCATCGGCAGGTGGTTGCCGCTGTCGTCGGCAACACCCTCGAGTGGTACGACTTCATCGTTTACGGTTTCTTCTCCGGCATCATCGCGCGGCTGTTCTTTCCCGCCGAGAGCCAGTACGCATCGCTGCTGATGTCGCTCGCGACCTTCGGCGTCGGCTTCTTCATGCGCCCGGTGGGCGGCATCCTGCTCGGGCTCTATGCGGACCGCAAGGGCCGCAAGGCCGCGATGCAGCTCATCATCTTCCTGATGACGCTGTCGATCGCGCTGATCACGTTCGCGCCGTCGTACGCGGCAATCGGCCCGGCGGCGCCAGTCCTGATCGTCGTTGCGCGGCTGCTGCAGGGCTTCGCCACCGGCGGCGAATACGCGAGCGCGACAGCGTTCCTCGTGGAAAGCGCGCCGGAGAACCGGCGCGGGCTGTACGGATCGTGGCAACTGATCGGCCAGTGTCTCGCGGTGTTCTCCGGCGCCGCGATGGGCGCGTGGGCCACGCAGTCGCTGTCGGAGGCGGCGCTGCATAGCTGGGGCTGGCGCGTGCCGTTCGCGCTCGGGCTGCTGATCGGGCCGGTCGGCCTGTGGATCCGCCGGCACATGGAGGAGACCGAGGCGTTCCTCGACGCGAGCAAGTCGACCGTCGAGCCGCCGGCGAGCGTGTCGGGCGTGTTGCGCGACAACCTGCGCGGCGTGCTGGTGTCGATGGGGCAGACGATCACGGGCACGGCCGTGTTCTACGTGATGCTCGTCAACATGCCGACGTTCGTGCACAAGACCTTCGGGCTGCCGCTCGACCAGGTATTCAAGGTACAGATGGCGGCGGTTGCGCTGCTGACGGTGACGATCCCGTTCGCGGCGCTCGTGTCCGACCGCATCGGCCGGCGTCCCGTGCTGATCGCCGGTTCGCTGGCGCTGCTGACGGTCACGTATCCGCTGTTCACGTGGCTGGCCGCCGCGCCGGGCATCGGGCGCCTGCTCGTGATGCAGCTCGTGATCTGCACGATCATCGGCATCTGCTACGGGCCCGCGCCGACCACGCTCGCCGAGCAGTTCGCGACGCGTTCGCGCTCGACCGGCATCGCGCTCGCCTACAACGTCGCGGTGATGGTGTTCGGCGGCTTCGCGCCGTTCATCGTCACGTGGCTGACGCACGCGAGCGGATCGCCTGTCGCACCCGCGTGGTACGTGCTGTTCGCGGCATCGTTCGGGCTGCTCGCGAGCGTGTTCATGCACGACGGCGCGCCGTGCGTGCTCGCACGCCGGCAGTTTCAGGGCGAGCCGGTGAGCGCCAAGTAG > 299 Bcep18194_A5911 NA major_facilitator_transporter YP_370149.1 11 MPLSCRAPRAHVAAWARYTGGRMSTRDGLQPPSVDIGATLDDGPFTTMQRCVVLLAALAIVLDGFDGQLIGFAIPVLIREWGITRGAFAPAVAAGLIGMGIGSACAGIVADRFGRRQAVIGSVFLFGIATCAIGFAPDVTAIAALRFVAGLGIGGALPTATTMTAEYTPARRRTMMVTATIVCVPLGGMLAGLFAHEVLPRYGWRGLFFAGGALPLVLGFVLVRALPESPRYLARRPARWPELGALLARMERPVAPGTAFTDMRDARAAGGRGGFGALFESGQARDTIALWCAFFMCLLAVYAAFSWLPTMLAASGLSVSVAGTGLTAYNLGGVIGALLCAWTIAHAGSRWPLVLCSIGGAASAVWLMGVDASRHTGWLIVGLGLHGLFVNAVQSTMYALCAYIYPTAVRATGTASALAFGRLGAILSAFAGAIVITTGGATAYLTMLAIAMGVVCVALLVVRRHIPRLSRAAVQPREGEELARTSS beta_subgroup Burkholderia_sp._383 Burkholderia_sp._383 NC_007510 3031353..3032816 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Kyrpides,N.,_Lykidis,A._and_Richardson,P. NA 0:1464 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000151.URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Jim_Tiedje(tiedjej@pilot.msu.edu)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LLNLQuality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFContacts:_Paul_Richardson_(microbes@cuba.jgi-psf.org)Finished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.COMPLETENESS:_full_length. NA 21-JAN-2012 Burkholderia_sp._383_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_sp_Q39DG1_BURS3.gb Pseudomonas_RNA_homology_group_II 78064658 Unpublished NA NC_007510 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1464 1 genomic_DNA NA 383 NA Burkholderia_sp._383 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 269483 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome_1_of_Burkholderia_sp._383 NA NC_007510.1 TCACGACGACGTGCGGGCCAGTTCCTCCCCTTCGCGCGGCTGCACCGCCGCGCGCGACAGTCGCGGAATGTGCCGTCGCACGACGAGCAGCGCGACGCAGACCACCCCCATCGCAATCGCCAGCATCGTCAGATAAGCCGTGGCACCGCCCGTGGTGATCACGATCGCGCCCGCGAACGCGCTGAGGATCGCGCCGAGCCGGCCGAACGCGAGCGCGCTTGCCGTGCCCGTCGCGCGCACGGCCGTCGGGTAGATGTACGCGCAGAGCGCATACATCGTCGACTGCACCGCGTTGACGAACAGCCCGTGCAGGCCGAGCCCGACGATCAGCCAGCCCGTGTGGCGGCTCGCATCGACACCCATCAGCCATACCGCACTCGCCGCGCCGCCGATGCTGCACAACACGAGCGGCCAGCGCGACCCGGCATGCGCGATCGTCCACGCGCACAACAGCGCACCGATCACGCCACCGAGGTTGTATGCGGTGAGCCCCGTCCCCGCGACCGACACGCTCAGCCCGCTCGCCGCCAGCATCGTCGGCAGCCAGCTGAACGCCGCATACACGGCGAGCAGGCACATGAAGAACGCGCACCACAGCGCGATCGTGTCGCGCGCCTGACCGCTCTCGAACAACGCGCCGAAGCCGCCACGGCCGCCCGCCGCGCGCGCGTCCCGCATGTCGGTGAAGGCAGTGCCCGGCGCGACGGGCCGCTCCATCCGCGCGAGCAGCGCGCCGAGTTCCGGCCAGCGCGCGGGGCGCCGCGCAAGATAGCGCGGCGATTCGGGCAGCGCACGCACGAGCACGAAGCCGAGCACGAGCGGCAATGCGCCGCCCGCGAAGAACAGCCCGCGCCAGCCGTAGCGCGGCAGCACCTCGTGCGCGAACAGGCCGGCCAGCATCCCGCCGAGCGGCACGCAGACGATCGTCGCGGTCACCATCATCGTGCGACGCCGCGCGGGCGTGTATTCGGCCGTCATCGTCGTGGCCGTCGGCAACGCGCCGCCGATCCCGAGGCCTGCGACGAAGCGCAGCGCCGCGATCGCCGTGACGTCCGGTGCGAAGCCGATCGCGCAGGTCGCAATGCCGAACAGGAACACGCTGCCGATCACGGCCTGGCGGCGGCCGAAGCGGTCCGCGACGATCCCCGCGCACGCGCTGCCGATGCCCATCCCGATCAGCCCGGCCGCCACCGCCGGCGCGAACGCGCCACGCGTGATGCCCCATTCGCGGATCAGCACCGGAATCGCGAAGCCGATCAGCTGGCCGTCGAAGCCGTCGAGCACGATCGCGAGCGCGGCGAGCAGCACCACGCAGCGCTGCATCGTCGTGAACGGCCCGTCGTCGAGCGTCGCGCCGATGTCGACGGACGGAGGCTGCAATCCGTCGCGCGTGCTCATGCGACCTCCCGTGTACCGCGCCCAGGCGGCAACGTGCGCGCGCGGCGCGCGGCAAGACAACGGCAT > 300 Bcep18194_C7098 NA major_facilitator_transporter YP_366786.1 11 MAAMQSAATPLSDEEARRQLRRAVIASTIGTTIEWYDFFLYSTVTGLVFAKLYFPQSHPLVGTLQAFLIYAVGFVARPVGAAIFGHYGDRIGRKATLIVTLLLMGLATFAVAFVPTYATIGIWGAVILTVLRFIQGVGVGGEWGGSVLMSMEWARTNAHRGFVASWPQFGVPAGLFLANLAVLAMSWFSGSAFLTWGWRVPFFLSIVLVAIGLYIRLNILETPIFAKLLAERRIEKTPMLEVLRKQPRDIVLSAFARMAEQAPFYIYTAFVFTYGITALGVTRELLLAAVLVASVVEFFTIPLFGHVSDLIGRRRMYMIGAAAVGVFGFVYFAMVDSRNPVWIFAAIVLSLVPHSMMYGPQAALIAESFTGRLRYSGASMGYQLASVIAGGPAPLIATALFAYYHSGYAIAVYVLACAVLSVVAASKLGDYTNKDISREYDDARGLADHGHAPPVT beta_subgroup Burkholderia_sp._383 Burkholderia_sp._383 NC_007509 664962..666332 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Kyrpides,N.,_Lykidis,A._and_Richardson,P. NA 0:1371 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000150.URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Jim_Tiedje(tiedjej@pilot.msu.edu)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LLNLQuality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFContacts:_Paul_Richardson_(microbes@cuba.jgi-psf.org)Finished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.COMPLETENESS:_full_length. NA 21-JAN-2012 Burkholderia_sp._383_chromosome_3,_complete_genome. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_sp_Q39N24_BURS3.gb Pseudomonas_RNA_homology_group_II 78059643 Unpublished NA NC_007509 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1371 3 genomic_DNA NA 383 NA Burkholderia_sp._383 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 269483 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_chromosome_3_of_Burkholderia_sp._383 NA NC_007509.1 ATGGCTGCCATGCAATCCGCGGCCACGCCCCTCTCCGACGAGGAAGCCCGGCGCCAGTTGCGCCGCGCCGTCATCGCCAGCACGATTGGCACCACGATCGAATGGTATGACTTCTTCCTCTACAGCACGGTCACCGGCCTGGTCTTCGCAAAGCTGTATTTCCCGCAATCCCACCCACTCGTCGGTACGCTACAGGCGTTCCTGATCTACGCCGTCGGCTTCGTCGCGCGGCCGGTCGGCGCAGCGATCTTCGGCCATTACGGCGACCGCATCGGACGCAAGGCCACACTGATCGTGACCCTGTTGCTGATGGGGCTCGCCACCTTCGCCGTCGCCTTCGTTCCGACCTACGCCACGATCGGCATCTGGGGTGCCGTCATCCTCACGGTACTGCGCTTCATCCAGGGCGTCGGCGTGGGCGGCGAATGGGGCGGCTCGGTCCTGATGTCGATGGAGTGGGCGCGCACCAATGCGCATCGCGGTTTCGTCGCGTCGTGGCCGCAGTTCGGCGTGCCAGCGGGATTGTTTCTCGCCAACCTTGCCGTACTGGCCATGAGCTGGTTTTCCGGCAGCGCTTTCCTGACGTGGGGCTGGCGCGTACCGTTTTTCCTCAGCATCGTGCTGGTGGCGATCGGGCTCTATATCCGTCTGAATATTCTCGAGACGCCGATCTTCGCGAAGCTGCTGGCCGAGCGTCGGATCGAGAAGACGCCGATGCTCGAAGTGCTGCGCAAGCAGCCGAGGGATATCGTGCTGTCGGCGTTTGCGCGGATGGCCGAACAGGCGCCGTTCTATATCTATACGGCGTTCGTGTTCACTTACGGGATCACGGCGCTGGGCGTTACGCGCGAATTGTTGCTGGCGGCAGTGCTGGTCGCATCCGTGGTCGAGTTCTTCACCATTCCGCTGTTCGGGCACGTGTCGGACCTGATCGGGCGGCGGCGGATGTACATGATCGGCGCGGCTGCCGTCGGTGTATTCGGATTCGTCTACTTCGCGATGGTCGATAGCCGGAATCCAGTATGGATCTTCGCAGCGATCGTGTTGTCGCTGGTCCCGCATTCAATGATGTACGGACCGCAGGCTGCACTGATCGCCGAGTCGTTCACCGGGCGGCTGCGGTATAGCGGCGCGTCGATGGGTTATCAGCTCGCGTCGGTCATTGCCGGTGGCCCGGCACCGCTGATCGCAACGGCGCTGTTTGCCTACTACCACTCGGGGTACGCGATCGCGGTGTACGTGCTGGCGTGTGCGGTACTGAGCGTGGTCGCCGCGTCGAAGCTCGGGGACTATACGAACAAGGATATTTCGCGGGAATACGACGACGCTCGGGGTTTGGCAGATCACGGGCACGCACCGCCGGTGACTTGA > 301 Bcep1808_1208 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bch:Bcen2424_1252_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_001119054.1 11 MSQSLPSARQPARAATAAFIGTMIEWYDFYIYATAAALVFGQLYFPSHDPFVSTMASFATFAVGFFARPLGGIVFGHLGDRIGRKKALMTTLMMMGVATVCVGLLPDYSKVGVLAPVLLVALRVVQGIAVGGEWGGAVLMAGEHAPQGRRTFFASFAQLGSPAGLILSLVAFRAVTSMDKADFLAWGWRVPFLASAVLLVVGILIRLGVNESPEFARVKEANRTVKLPVAEVFRSASGLVLFCIGANTIGIAGVYFTNTFMIAYTTQYVGVSRSLILDSLFAVAIIQFVAQPAAAWLAERIGSARFLKIAALLAMLSPYPMFMLVQGGTSASLIAGIALAVVCMAGFYSVIAGFVSDVFPAHVRYSAISLAYQVCGALAGGLTPLVGTWLAHRFTGQWWPLAVFYTGLAGISLLCIVALDARRASRPAAAEALGSH beta_subgroup Burkholderia_vietnamiensis_G4 Burkholderia_vietnamiensis_G4 NC_009256 1308953..1310263 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Tiedje,J._and_Richardson,P. NA 0:1311 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000614.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3436384Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-APR-2011 Burkholderia_vietnamiensis_G4_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_vietnamiensis_A4JD66_BURVG.gb Pseudomonas_RNA_homology_group_II 134294128 Unpublished NA NC_009256 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1311 1 genomic_DNA NA G4 NA Burkholderia_vietnamiensis_Gillis_et_al._1995 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 269482 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_Chromosome1_of_Burkholderia_vietnamiensis_G4 NA NC_009256.1 ATGAGCCAGTCCCTTCCTAGCGCGCGTCAGCCGGCGCGTGCCGCGACCGCGGCGTTCATCGGCACGATGATCGAGTGGTACGACTTCTACATCTACGCGACCGCCGCCGCGCTCGTGTTCGGTCAGCTCTATTTCCCGTCGCACGACCCGTTCGTCAGCACGATGGCGTCGTTCGCGACGTTTGCCGTGGGCTTCTTCGCGCGGCCGCTCGGCGGCATCGTGTTCGGCCATCTCGGCGACCGCATCGGCCGCAAGAAGGCGCTGATGACGACGTTGATGATGATGGGCGTCGCGACGGTGTGCGTCGGGCTGCTGCCCGACTATTCGAAGGTCGGCGTGCTCGCGCCGGTGCTGCTGGTGGCGCTGCGCGTCGTGCAGGGGATCGCGGTCGGCGGCGAGTGGGGCGGCGCGGTGCTGATGGCCGGCGAGCATGCGCCGCAGGGCCGCCGCACGTTCTTCGCGTCGTTCGCGCAGCTCGGCAGCCCGGCCGGGCTGATCCTGTCGCTGGTCGCGTTTCGCGCGGTCACGTCGATGGACAAGGCCGACTTCCTCGCGTGGGGCTGGCGCGTGCCGTTTCTGGCGAGCGCGGTGCTGCTGGTGGTCGGCATCCTGATCCGGCTGGGCGTGAACGAGTCGCCGGAATTCGCGCGCGTGAAAGAGGCGAACCGCACGGTGAAGCTGCCGGTCGCCGAAGTGTTCCGCTCCGCGTCCGGGCTCGTGCTGTTCTGCATCGGCGCGAACACGATCGGGATCGCGGGCGTCTACTTCACCAACACGTTCATGATCGCGTACACGACGCAGTACGTCGGCGTGTCGCGCTCGCTGATCCTCGACAGCCTGTTCGCGGTCGCGATCATCCAGTTCGTCGCGCAGCCGGCTGCCGCGTGGCTTGCCGAGCGCATCGGCAGCGCGCGGTTCCTGAAGATCGCCGCGCTGCTCGCGATGCTGTCGCCGTACCCGATGTTCATGCTGGTGCAGGGCGGCACGTCCGCGTCGCTGATCGCCGGCATCGCGCTCGCGGTCGTCTGCATGGCCGGCTTCTATTCGGTGATCGCCGGCTTCGTGAGCGACGTGTTTCCGGCCCACGTGCGCTATTCGGCGATCTCGCTCGCGTACCAGGTGTGCGGCGCGCTCGCCGGCGGCCTGACGCCGCTCGTCGGCACCTGGCTGGCGCATCGCTTCACCGGCCAGTGGTGGCCGCTCGCGGTGTTCTACACGGGCCTCGCCGGCATCTCGCTGCTCTGCATCGTCGCGCTCGACGCACGGCGCGCGTCCCGGCCGGCTGCCGCCGAGGCGCTCGGCTCGCACTGA > 302 Bcep1808_1235 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bur:Bcep18194_A4424_major_facilitator_superfamily_(MFS_1)_transporter general_substrate_transporter YP_001119080.1 11 MTLTATHVSPIAASPSPSSGEAPLAADDITVVDQSLLKRAVSAMAIGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSAQLLATFGTFAAAFVVRPLGGMVFGPLGDRIGRQRVLAATMIMMAVGTFAIGLIPSYASIGIMAPVLLLVARLVQGFSTGGEYGGAATFIAEFSTDKRRGFMGSFLEFGTLIGYVMGAGVVALLTASLSEDALLSWGWRVPFLIAGPLGLIGLYIRMKLEETPAFKRQAEAREAQDKAVPKTRFRETLFANWRALLLCVGLVLIFNVTDYMVLSYLPSFMSSTLHFDESHSLVLVLIVMVLMMPLTLAAGRLSDRIGRKPVMLAGCVGLLALSIPSMMLIHAGTTASVFGGLLILGVLLSCFTGVMPSALPALFPTEIRYGALAIGFNVSVSLFGGTTPLVTAWLVDVTQNLMMPAYYMMGAAVIGIVSVVALAETARQPLKGSPPAVATHREAHQLVRQLRDEDEAEIYGVVSAARA beta_subgroup Burkholderia_vietnamiensis_G4 Burkholderia_vietnamiensis_G4 NC_009256 1335200..1336684 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Tiedje,J._and_Richardson,P. NA 0:1485 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000614.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3436384Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-APR-2011 Burkholderia_vietnamiensis_G4_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_vietnamiensis_A4JD92_BURVG.gb Pseudomonas_RNA_homology_group_II 134294128 Unpublished NA NC_009256 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1485 1 genomic_DNA NA G4 NA Burkholderia_vietnamiensis_Gillis_et_al._1995 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 269482 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_Chromosome1_of_Burkholderia_vietnamiensis_G4 NA NC_009256.1 TCAGGCGCGTGCGGCCGACACGACGCCGTAGATTTCGGCTTCGTCCTCGTCGCGCAGCTGGCGCACCAGCTGGTGTGCTTCGCGGTGCGTCGCGACGGCCGGCGGCGAGCCCTTGAGCGGCTGACGCGCGGTCTCGGCGAGCGCGACGACCGACACGATGCCGATCACGGCGGCGCCCATCATGTAATAGGCGGGCATCATCAGGTTTTGCGTCACGTCGACGAGCCAGGCCGTCACCAGCGGCGTCGTGCCGCCGAACAGCGACACCGACACGTTGAAGCCGATCGCGAGCGCGCCGTAGCGGATCTCCGTCGGGAACAGCGCGGGCAGCGCCGACGGCATCACGCCGGTGAAGCACGACAGCAGCACGCCGAGGATCAGCAGGCCGCCGAACACCGACGCGGTGGTGCCCGCATGGATCAGCATCATCGACGGGATCGACAGCGCGAGCAGGCCCACGCAGCCGGCCAGCATGACCGGCTTGCGGCCGATGCGGTCCGACAGGCGGCCGGCCGCGAGCGTGAGCGGCATCATCAGCACCATCACGATCAGCACCAGCACGAGGCTGTGCGACTCGTCGAAGTGCAGCGTGGACGACATGAAGCTCGGCAGGTACGACAGCACCATGTAATCGGTCACGTTGAAGATCAGCACGAGGCCGACGCAGAGCAGGAGCGCGCGCCAGTTGGCGAACAGCGTTTCGCGAAAGCGCGTCTTCGGCACGGCCTTGTCCTGCGCTTCGCGCGCTTCGGCCTGACGCTTGAACGCCGGCGTCTCCTCGAGCTTCATCCGGATGTACAGCCCGATCAGGCCGAGCGGCCCTGCGATCAGGAACGGCACGCGCCAGCCCCACGACAGCAGCGCGTCCTCCGACAGCGACGCGGTCAGCAGCGCGACGACGCCGGCGCCCATCACATAGCCGATCAGCGTGCCGAACTCGAGGAAGCTGCCCATGAAGCCGCGGCGCTTGTCGGTCGAGAACTCGGCGATGAAGGTGGCGGCGCCGCCGTATTCGCCGCCGGTGGAGAAGCCCTGCACGAGGCGGGCGACGAGCAGCAGCACGGGCGCCATGATGCCGATCGACGCGTAGCTGGGGATCAGGCCGATCGCGAAGGTGCCGACGGCCATCATGATCATGGTGGCGGCGAGCACGCGCTGGCGGCCGATGCGGTCGCCGAGCGGGCCGAACACCATGCCGCCGAGCGGGCGCACGACGAACGCGGCCGCGAACGTGCCGAAGGTGGCGAGCAGCTGCGCGGACGGGCTGCTCGACGGGAAGAACACCTTGCCGAGCGTGACGGCGATGTAGCTGTAGACGCCGAAGTCGAACCATTCCATCGCATTGCCGATGGCCATTGCGCTGACGGCGCGCTTGAGCAGGCTCTGGTCGACGACGGTGATGTCGTCCGCGGCGAGCGGGGCCTCGCCGGACGACGGGGAAGGGGAAGCAGCGATCGGGCTGACGTGTGTTGCGGTCAAGGTCAT > 303 Bcep1808_5080 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bch:Bcen2424_4548_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_001117496.1 11 METSALPLAGSPADARAAAHKRRLIAAAAVGNALEFYDFTVYSFFAILIGKLFFPVHSSFGQLMLAVASFGVGFVTRPLGGLVIGMYADRAGRKNAMIVTLLLMALGTATIAVAPTFAQIGIAAPLLLVLARLLQGFASGGEVGASTTLLLEQAPQHRRGYYASFQFSSQGLAALAGALTGVALTSTLTAAQLESWGWRVPFVIGTLFVPLGYWLRRTVDEVPAAAPATHAAQPAVASLPLADVLRHHGKAVFAGLGVTIGGTSIHYIIVFYMAIYGVQVLHLPTWLSMTAGCVAGAILMLVTPIGGYLSDVYGRNRIVWWTRIALMVAIYPAFIALNRWPGAASLLSIIAALSIVHAINIGATGAMLGELFPRAVRATGGALVYSVGVAIFGGFAQFFVTWLIAATGNPNAPAWYAIGCGTLTLLAIRCMDEKAGKSLD beta_subgroup Burkholderia_vietnamiensis_G4 Burkholderia_vietnamiensis_G4 NC_009255 1978877..1980199 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Tiedje,J._and_Richardson,P. NA 0:1323 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000615.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3436384Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 21-JAN-2012 Burkholderia_vietnamiensis_G4_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_vietnamiensis_A4JP28_BURVG.gb Pseudomonas_RNA_homology_group_II 134292031 Unpublished NA NC_009255 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1323 2 genomic_DNA NA G4 NA Burkholderia_vietnamiensis_Gillis_et_al._1995 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 269482 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_Chromosome2_of_Burkholderia_vietnamiensis_G4 NA NC_009255.1 ATGGAAACGTCCGCCCTTCCGCTCGCCGGCTCGCCGGCCGATGCGCGCGCCGCCGCGCACAAGCGCCGCCTGATCGCGGCCGCCGCCGTCGGCAATGCGCTGGAGTTCTACGACTTCACGGTCTACAGCTTCTTCGCGATCCTGATCGGCAAGCTGTTCTTTCCGGTGCATTCGTCGTTCGGGCAATTGATGCTGGCCGTCGCGAGCTTCGGTGTCGGCTTCGTCACGCGGCCGCTCGGCGGCCTCGTGATCGGCATGTACGCCGATCGCGCCGGCCGCAAGAACGCGATGATCGTCACGCTGCTGCTGATGGCGCTCGGCACCGCGACGATCGCGGTCGCGCCGACCTTCGCGCAGATCGGCATCGCCGCGCCGCTGTTGCTGGTGCTCGCGCGCCTGCTGCAAGGGTTCGCATCGGGCGGCGAAGTCGGCGCGTCGACGACGCTGCTGCTCGAACAAGCGCCGCAGCATCGCCGCGGCTACTACGCGTCGTTCCAGTTCTCGAGCCAGGGGCTCGCCGCGCTGGCCGGTGCGCTCACCGGCGTCGCGCTGACCTCGACGCTCACTGCCGCGCAGCTCGAAAGCTGGGGCTGGCGCGTGCCGTTCGTCATCGGCACGCTGTTCGTGCCGCTCGGCTACTGGCTGCGCCGCACCGTCGACGAAGTGCCGGCCGCCGCGCCTGCAACGCACGCCGCGCAACCCGCGGTCGCATCGCTGCCGCTCGCCGACGTGCTGCGTCATCACGGCAAGGCCGTGTTCGCGGGGCTCGGCGTGACGATCGGCGGCACGTCGATCCACTACATCATCGTGTTCTACATGGCGATCTACGGCGTGCAGGTGCTGCACCTGCCGACGTGGCTGTCGATGACGGCCGGTTGCGTCGCCGGCGCGATCCTGATGCTGGTCACGCCGATCGGCGGCTATCTGTCGGACGTCTACGGGCGCAACCGGATCGTCTGGTGGACGCGCATCGCGCTGATGGTCGCGATCTATCCGGCGTTCATCGCGTTGAATCGCTGGCCGGGCGCCGCGTCGCTGCTGTCGATCATCGCCGCGCTGTCGATCGTGCACGCGATCAACATCGGCGCGACCGGCGCGATGCTCGGCGAGCTGTTTCCGCGTGCGGTGCGCGCGACCGGCGGCGCGCTGGTGTACAGCGTGGGCGTCGCGATCTTCGGCGGCTTCGCGCAGTTCTTCGTCACGTGGCTGATCGCGGCGACCGGCAATCCGAACGCGCCCGCGTGGTATGCGATCGGATGCGGCACGCTGACGCTGCTCGCGATCCGCTGCATGGACGAGAAGGCCGGCAAATCCCTCGATTGA > 304 Bcep1808_5456 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bam:Bamb_6031_general_substrate_transporter general_substrate_transporter YP_001114655.1 11 MRYVPSMTSVSAAASVADDAASRGDEPHCLPRVAIAAAALGNATEWFDYGIYAYGLEYISAALFPGSTASATLFALGTFAISFLIRPLGGLFWGPLGDRLGRKRVLALTVLTMSGATLLVGVLPTYASAGWLAPAALIVLRMVQGFSTGGEYGGAATFIAEYAPDARRGLCGSFLEFATLAGFSLGALLMLGFALLLGDTAMHAWGWRLPFLVAAPLGLIGFYLRSRLEETPVFRELEEQAQRREQSAAAAALPLGRLLVRYARPLLLLGGLVVALNVVNYVLLAYMPTYMHKELGVSENLSLLIPLLGMLAMMVLLPFAGWLSDRVGRKTMWWISLVGLFVAAVPMFALMTHGVLGAFVGFAVLGLLYVPQLATISAMFPAMFPTHVRYAGMAIAYNVSTSLFGGTAPIVNDWLIGKTGNTMIPAYYMMAACAVGLVALSAVIETRGCSLRGDAVPGQAR beta_subgroup Burkholderia_vietnamiensis_G4 Burkholderia_vietnamiensis_G4 NC_009254 2325..3710 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Tiedje,J._and_Richardson,P. NA 0:1386 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000616.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3436384Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 21-JAN-2012 Burkholderia_vietnamiensis_G4_chromosome_3,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_vietnamiensis_A4JQ47_BURVG.gb Pseudomonas_RNA_homology_group_II 134290884 Unpublished NA NC_009254 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1386 3 genomic_DNA NA G4 NA Burkholderia_vietnamiensis_Gillis_et_al._1995 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 269482 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia,_Burkholderia_cepacia_complex Complete_sequence_of_Chromosome3_of_Burkholderia_vietnamiensis_G4 NA NC_009254.1 ATGCGATACGTGCCATCGATGACTTCCGTTTCCGCGGCCGCTTCCGTTGCGGACGACGCGGCTTCCCGCGGCGACGAGCCGCACTGTCTGCCGCGCGTCGCGATCGCGGCCGCGGCCCTCGGCAATGCGACCGAATGGTTCGACTACGGCATTTACGCGTACGGGCTCGAGTACATTTCGGCCGCGCTGTTTCCGGGCAGCACGGCCAGCGCGACGCTGTTCGCGCTCGGCACGTTCGCGATCTCGTTCCTGATCCGTCCGCTCGGCGGCCTGTTCTGGGGCCCGCTCGGCGACCGCCTCGGCCGCAAGCGCGTGCTCGCGCTGACCGTCCTGACGATGTCGGGCGCCACGCTGCTGGTCGGCGTGCTGCCGACCTACGCGAGCGCCGGCTGGCTCGCGCCGGCCGCCCTGATCGTGCTGCGCATGGTGCAGGGCTTCTCGACCGGCGGCGAATACGGCGGCGCGGCGACCTTCATCGCCGAATACGCGCCCGACGCGCGACGCGGCCTGTGCGGCAGCTTCCTCGAGTTCGCGACGCTCGCCGGGTTTTCGCTCGGCGCGCTACTGATGCTCGGCTTCGCGCTGCTGCTCGGCGACACCGCGATGCACGCCTGGGGCTGGCGCCTGCCGTTCCTCGTCGCGGCGCCGCTCGGGCTGATCGGCTTCTACCTGCGCTCGCGCCTCGAGGAAACGCCGGTGTTCCGCGAACTCGAAGAACAGGCGCAGCGGCGCGAGCAGAGCGCCGCGGCCGCCGCGCTGCCGCTCGGCCGGCTGCTGGTCCGCTATGCGAGGCCGCTGCTGCTGCTCGGCGGGCTCGTCGTCGCGCTGAACGTCGTCAACTACGTGCTGCTCGCGTACATGCCAACCTACATGCACAAGGAACTCGGCGTCAGCGAAAACCTGTCGCTGTTGATTCCGCTGCTCGGCATGCTCGCGATGATGGTGCTGCTGCCGTTCGCCGGCTGGCTGTCGGATCGCGTCGGCCGCAAGACGATGTGGTGGATCTCGCTCGTCGGGTTGTTCGTCGCGGCCGTGCCGATGTTCGCGCTGATGACGCACGGCGTGCTCGGCGCATTCGTCGGTTTCGCGGTGCTCGGCCTGCTGTACGTGCCGCAGCTCGCGACCATTTCCGCGATGTTCCCGGCGATGTTTCCGACCCACGTGCGCTATGCGGGCATGGCGATCGCGTACAACGTGTCGACGTCGCTGTTCGGCGGCACCGCGCCGATCGTCAACGACTGGCTGATCGGCAAGACCGGCAACACGATGATCCCCGCCTACTACATGATGGCCGCGTGCGCAGTCGGGCTCGTCGCGCTGTCGGCGGTGATCGAGACGCGCGGCTGCTCGCTGCGCGGCGACGCGGTGCCGGGGCAAGCGCGTTGA > 305 Bxe_C1037 NA major_facilitator_superfamily_metabolite/H(+)_symporter YP_556255.1 11 MSTLNDSIGTAAQHQVEQSIAHDPARRRRIVIGAGIGTAIEYYDFTIYAFLATTIAQVFFPKSDPTAGLLSTFAIFAASFFLRPFGGIVIGHLADKFGRRRALTLSVAGMVVASVVVGLIPSYDMIGVVAPAVLVLLRSIQAFSAGGELGTAASYVAEQSPVKRRGYLTGFVNLGTVTGTLLASFTVALTRAFVADTNFASWGWRIPFLISLPLGIIALIVRLRMEESIAFEEIAKEKDIKRAPALGVLKARPTAVLVVIALALTSNASYWTVFTYMSTLLQTQHVIDAKTAAWSTTATLVLAAVSMPFWSLLSDRFGRKIVMILVNGLFVVASYPLFKLATHSAGVGIAVQLILGQITACYLANLLATLAETLPASMRVSGFALGYNIASILAGGSAGYVATWLVAHTGNPASPAFFVMVATGLALVASVCMRETANRPLLLDA beta_subgroup Burkholderia_xenovorans_LB400 Burkholderia_xenovorans_LB400 NC_007953 1074124..1075461 Chain,P.S.,_Denef,V.J.,_Konstantinidis,K.T.,_Vergez,L.M.,_Agullo,L.,_Reyes,V.L.,_Hauser,L.,_Cordova,M.,_Gomez,L.,_Gonzalez,M.,_Land,M.,_Lao,V.,_Larimer,F.,_LiPuma,J.J.,_Mahenthiralingam,E.,_Malfatti,S.A.,_Marx,C.J.,_Parnell,J.J.,_Ramette,A.,_Richardson,P.,_Seeger,M.,_Smith,D.,_Spilker,T.,_Sul,W.J.,_Tsoi,T.V.,_Ulrich,L.E.,_Zhulin,I.B._and_Tiedje,J.M. NA 0:1338 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000272.URL_--_http://www.jgi.doe.govJGI_Project_ID:_2351477Source_DNA_and_bacteria_available_from_Jim_Tiedje(tiedjej@pilot.msu.edu)Contacts:_Jim_Tiedje_(tiedjej@pilot.msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 03-JUN-2010 Burkholderia_xenovorans_LB400_chromosome_3,_complete_genome. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_xenovorans_Q13G84_BURXL.gb Pseudomonas_RNA_homology_group_II 91780071 Proc._Natl._Acad._Sci._U.S.A._103_(42),_15280-15287_(2006) NA NC_007953 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 17030797 1338 3 genomic_DNA NA LB400 NA Burkholderia_xenovorans_Goris_et_al._2004 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 266265 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Burkholderia_xenovorans_LB400_harbors_a_multi-replicon,_9.73-Mbp_genome_shaped_for_versatility NA NC_007953.1 TCACGCATCCAGCAGCAGTGGACGATTCGCCGTCTCGCGCATGCAGACCGAGGCCACCAATGCAAGGCCGGTCGCGACCATCACGAAGAACGCCGGCGATGCAGGGTTTCCGGTATGGGCGACGAGCCACGTCGCGACGTAGCCCGCCGATCCCCCCGCAAGGATCGAAGCGATGTTGTAGCCGAGCGCGAAGCCGCTGACGCGCATCGAGGCCGGCAGCGTCTCGGCAAGCGTCGCGAGCAGATTCGCCAGATAGCACGCGGTGATCTGGCCGAGAATGAGTTGAACGGCAATACCGACGCCTGCGCTATGAGTCGCGAGCTTGAAAAGCGGATACGAGGCGACGACGAACAGGCCGTTCACGAGGATCATGACGATCTTTCTGCCGAACCGGTCGGAAAGCAGCGACCAGAACGGCATCGACACCGCAGCCAGCACCAGCGTCGCCGTCGTGGACCATGCGGCGGTCTTCGCATCGATCACATGTTGTGTCTGCAGCAGCGTGCTCATATAGGTGAATACCGTCCAGTAGCTGGCATTCGAGGTCAGCGCCAGCGCGATCACAACGAGCACCGCGGTCGGACGAGCCTTCAGCACGCCGAGCGCGGGCGCACGCTTGATGTCTTTTTCCTTCGCGATTTCCTCGAATGCGATCGACTCTTCCATCCGCAAGCGCACGATCAACGCGATGATGCCGAGCGGCAACGAAATCAGGAACGGAATGCGCCAACCCCACGACGCGAAATTCGTATCCGCCACGAACGCGCGCGTGAGAGCGACGGTGAACGACGCGAGCAGCGTGCCTGTCACGGTGCCAAGATTCACGAAACCGGTGAGATAGCCGCGGCGCTTGACCGGCGACTGCTCGGCCACATAGGACGCCGCGGTCCCCAGTTCACCACCGGCGGAAAATGCCTGAATGCTACGCAGCAGCACGAGTACCGCGGGCGCCACAACGCCAATCATGTCGTAAGACGGAATCAGGCCAACCACGACACTCGCGACGACCATCCCGGCAACCGACAGCGTCAACGCCCTGCGCCGTCCGAACTTGTCCGCAAGGTGTCCGATCACGATGCCGCCGAACGGCCGCAGGAAAAACGACGCGGCGAAGATCGCGAACGTGGAGAGCAACCCGGCGGTCGGATCGGATTTCGGAAAGAAGACCTGCGCGATCGTCGTCGCGAGAAACGCGTAGATCGTGAAGTCGTAGTATTCGATCGCGGTTCCGATACCCGCGCCGATGACGATGCGGCGCCGCCGCGCCGGATCGTGAGCGATGCTCTGCTCGACCTGATGCTGCGCTGCGGTCCCGATCGAATCGTTCAAGGTACTCAT > 306 Bxe_A0428 NA major_facilitator_superfamily_sugar_transporter YP_560557.1 11 MSAPPTAAVHEKSTTLVDTDLPSRLDRLPWGRFHSLIVVALGVTWLLDGLEVTLAGAVASALKSSPSLHFTNADVGLAGSAYIAGAVLGALGFGWLTDRLGRRKLFFITLALYLAATAATALSWNLASFLLFRFLTGAGIGGEYTAINSTIQEFTPARVRGWTDLGINGTFWLGAGLGAAGSLVLLDPHLLPADWGWRACFFIGAVLALGILPMRIWVPESPRWLLTHGDERDARAIVEGIETRFRNEGHTLSDNDLTRLRLRARGHTPLREVFHTLFNVHRRRALVGLSLMTAQAFFYNAIFFTYALVLTDFYHVPGDHIGWYLLPFALGNFLGPLLLGRLFDVIGRRKMIFATYAMSAVLLTLSGYLFEQQLLTVVTQTIAWMVIFFFASAAASSAYLTVSESFPLEIRALAIAVFYAFGTALGGIAGPAFFGRLIDTHQRSEVFSGYLVGSALMLAAAVIAAIWGVDAERKSLENVATPLSSVAEGAE beta_subgroup Burkholderia_xenovorans_LB400 Burkholderia_xenovorans_LB400 NC_007951 4412617..4414092 Chain,P.S.,_Denef,V.J.,_Konstantinidis,K.T.,_Vergez,L.M.,_Agullo,L.,_Reyes,V.L.,_Hauser,L.,_Cordova,M.,_Gomez,L.,_Gonzalez,M.,_Land,M.,_Lao,V.,_Larimer,F.,_LiPuma,J.J.,_Mahenthiralingam,E.,_Malfatti,S.A.,_Marx,C.J.,_Parnell,J.J.,_Ramette,A.,_Richardson,P.,_Seeger,M.,_Smith,D.,_Spilker,T.,_Sul,W.J.,_Tsoi,T.V.,_Ulrich,L.E.,_Zhulin,I.B._and_Tiedje,J.M. NA 0:1476 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000270.URL_--_http://www.jgi.doe.govJGI_Project_ID:_2351477Source_DNA_and_bacteria_available_from_Jim_Tiedje(tiedjej@pilot.msu.edu)Contacts:_Jim_Tiedje_(tiedjej@pilot.msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 21-JAN-2012 Burkholderia_xenovorans_LB400_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_xenovorans_Q13TT4_BURXL.gb Pseudomonas_RNA_homology_group_II 91781384 Proc._Natl._Acad._Sci._U.S.A._103_(42),_15280-15287_(2006) NA NC_007951 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 17030797 1476 1 genomic_DNA NA LB400 NA Burkholderia_xenovorans_Goris_et_al._2004 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 266265 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Burkholderia_xenovorans_LB400_harbors_a_multi-replicon,_9.73-Mbp_genome_shaped_for_versatility NA NC_007951.1 ATGAGCGCGCCGCCCACAGCCGCTGTTCACGAAAAAAGCACGACGCTCGTCGATACGGATCTGCCTTCGCGGCTCGACCGCTTGCCGTGGGGCCGGTTTCACTCGCTGATCGTGGTGGCGCTAGGCGTGACCTGGCTGCTCGACGGGCTGGAAGTGACGCTGGCGGGCGCGGTGGCGAGTGCGCTGAAGTCCAGTCCATCGTTGCACTTTACCAACGCCGACGTTGGTCTGGCCGGCAGCGCTTACATTGCCGGAGCGGTGCTGGGCGCACTGGGGTTCGGCTGGCTGACCGACCGGCTCGGCCGCCGCAAGCTGTTTTTCATCACGCTCGCCCTTTATCTGGCGGCAACCGCGGCCACCGCGCTGTCGTGGAATCTGGCCAGCTTTCTGCTGTTTCGCTTTCTGACCGGCGCGGGCATTGGCGGCGAGTACACAGCGATCAACTCGACAATCCAGGAATTCACGCCCGCGCGCGTGCGCGGCTGGACCGATCTGGGCATCAACGGCACGTTCTGGCTCGGTGCGGGGCTCGGCGCGGCCGGCTCGCTGGTGCTGCTCGATCCCCATCTGCTGCCGGCCGACTGGGGCTGGCGCGCCTGTTTCTTCATCGGCGCGGTACTCGCGCTGGGCATTCTGCCGATGCGCATCTGGGTGCCGGAAAGCCCCCGCTGGCTGCTCACGCACGGCGACGAGCGCGACGCGCGCGCGATCGTCGAAGGAATCGAAACGCGTTTTCGCAACGAAGGCCACACGCTCTCCGACAATGACCTCACGCGTCTACGACTGCGCGCTCGCGGACATACGCCGCTACGCGAGGTATTTCATACGCTCTTCAACGTACACCGGCGGCGCGCGCTGGTTGGCCTGTCGCTGATGACCGCGCAGGCGTTTTTCTACAACGCGATCTTCTTCACCTACGCGCTGGTGCTCACCGATTTCTATCACGTGCCGGGCGACCACATCGGCTGGTATCTGCTGCCCTTCGCGCTCGGCAATTTCCTCGGACCGCTGCTGCTCGGCCGGCTATTCGACGTGATCGGCCGACGCAAGATGATCTTTGCGACTTACGCGATGTCCGCCGTCCTGCTGACGCTGAGCGGCTATCTGTTCGAGCAGCAGTTGCTCACCGTCGTCACGCAGACGATCGCGTGGATGGTGATCTTCTTTTTCGCGTCGGCAGCTGCGAGTTCGGCTTATCTGACCGTCAGCGAATCCTTCCCGCTGGAGATTCGTGCGCTGGCCATCGCGGTGTTCTACGCGTTCGGCACGGCGCTCGGCGGTATCGCCGGGCCCGCGTTCTTCGGCAGGCTCATCGACACGCATCAGCGCAGCGAAGTGTTTTCGGGCTATCTGGTCGGCTCGGCGCTGATGCTGGCGGCGGCGGTGATCGCCGCGATCTGGGGCGTGGATGCGGAGCGCAAGTCGCTGGAGAACGTGGCGACGCCGCTGTCGAGCGTCGCGGAGGGCGCGGAATAA > 307 Bxe_A2078 NA major_facilitator_superfamily_metabolite/H(+)_symporter YP_558942.1 11 MSVAAQNGAALPAVDQRQVMGAVAASCLGWALDLFDLFVLLFVAPVVGRLFFPSEHAMLSLAAVYASFAVTLLMRPLGSAWFGSYADRHGRKGAMIIAVVGVGLSTAAFGVLPTVAQVGLVAPILFLVLRLVQGVFVGGVVASTHTIGTESVAPKYRGAVSGLIGGGGAGLGALIASLTYLAMSALFPGAAFEVWGWRCMFFTGIISSVLGLFVFSSLEESPLWKKLAAEKAAKAAAQKLDAPVEVARSPLRTLFSSDYRSILLVNLLLTIGGGSGYYLTSGYLPTFLKVVSHAPNGAAAAILLICSVAVVIASVAAGHLSTFIGRRSAFIWLGVIRLFALPALFLLLPTAQSITMIGVYAVILSALGSAGYAPILIFLNERFPTAIRATGTGLSWNIGFAIGGMMPTAVSLVAKDASELPVTLAIFVGAISVIFLTGAFIVPETRGRLDQVAARDAV beta_subgroup Burkholderia_xenovorans_LB400 Burkholderia_xenovorans_LB400 NC_007951 2633216..2634592 Chain,P.S.,_Denef,V.J.,_Konstantinidis,K.T.,_Vergez,L.M.,_Agullo,L.,_Reyes,V.L.,_Hauser,L.,_Cordova,M.,_Gomez,L.,_Gonzalez,M.,_Land,M.,_Lao,V.,_Larimer,F.,_LiPuma,J.J.,_Mahenthiralingam,E.,_Malfatti,S.A.,_Marx,C.J.,_Parnell,J.J.,_Ramette,A.,_Richardson,P.,_Seeger,M.,_Smith,D.,_Spilker,T.,_Sul,W.J.,_Tsoi,T.V.,_Ulrich,L.E.,_Zhulin,I.B._and_Tiedje,J.M. NA 0:1377 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000270.URL_--_http://www.jgi.doe.govJGI_Project_ID:_2351477Source_DNA_and_bacteria_available_from_Jim_Tiedje(tiedjej@pilot.msu.edu)Contacts:_Jim_Tiedje_(tiedjej@pilot.msu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 21-JAN-2012 Burkholderia_xenovorans_LB400_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Burkholderia_xenovorans_Q13YE9_BURXL.gb Pseudomonas_RNA_homology_group_II 91781384 Proc._Natl._Acad._Sci._U.S.A._103_(42),_15280-15287_(2006) NA NC_007951 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 17030797 1377 1 genomic_DNA NA LB400 NA Burkholderia_xenovorans_Goris_et_al._2004 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 266265 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Burkholderia Burkholderia_xenovorans_LB400_harbors_a_multi-replicon,_9.73-Mbp_genome_shaped_for_versatility NA NC_007951.1 CTAGACCGCGTCGCGCGCCGCGACCTGATCGAGTCTGCCGCGCGTTTCCGGCACGATGAACGCGCCGGTCAGGAAGATCACGCTGATCGCACCGACGAAGATGGCCAGCGTCACCGGCAATTCGCTCGCGTCTTTCGCCACCAGCGAGACGGCAGTCGGCATCATGCCGCCGATCGCAAAGCCGATGTTCCATGAAAGCCCCGTGCCGGTCGCGCGAATCGCGGTCGGAAACCGTTCGTTCAGGAAGATCAGGATCGGCGCGTAGCCCGCGCTGCCGAGCGCGCTGAGAATCACCGCGTAGACGCCGATCATCGTGATGCTCTGCGCCGTGGGCAGCAGCAGGAAGAGCGCGGGCAACGCGAACAGGCGAATCACCCCGAGCCAGATGAAAGCGCTTCTGCGCCCGATGAAGGTGCTCAGATGCCCCGCCGCGACCGAGGCGATCACCACCGCCACGCTGCAGATCAGCAGAATCGCCGCCGCGGCGCCGTTCGGCGCGTGGCTCACCACCTTGAGGAAGGTCGGCAGATAGCCGGAGGTCAGGTAATAGCCGCTACCGCCGCCGATGGTGAGCAGCAGGTTGACCAGAAGGATCGAGCGATAGTCGCTGGAAAACAGCGTGCGCAGCGGCGAGCGCGCCACTTCGACCGGCGCGTCGAGCTTTTGCGCGGCGGCCTTGGCGGCCTTCTCGGCGGCGAGCTTTTTCCACAGCGGCGATTCCTCGAGACTGCTGAAAACGAACAGCCCGAGCACCGAGCTGATGATGCCGGTGAAGAACATGCAGCGCCAGCCCCACACCTCGAACGCCGCGCCGGGGAATAGCGCCGACATCGCCAGATACGTGAGCGAGGCGATCAACGCGCCGAGCCCCGCTCCGCCTCCGCCGATCAGCCCCGACACCGCGCCGCGATATTTCGGCGCGACCGATTCGGTGCCGATGGTATGCGTGGACGCCACTACTCCGCCGACAAACACGCCCTGCACCAGCCGCAGCACCAGAAACAGGATCGGCGCAACCAGCCCGACCTGCGCGACGGTCGGCAGCACGCCGAACGCCGCCGTGGAAAGGCCCACGCCGACCACGGCGATGATCATCGCGCCCTTGCGGCCGTGGCGGTCCGCATAGGAGCCGAACCAGGCGGAGCCGAGCGGGCGCATCAGCAAGGTCACGGCAAACGACGCATAGACCGCGGCGAGCGACAGCATGGCGTGCTCGGACGGGAAGAACAGCCGCCCGACCACCGGCGCGACGAACAGCAATACGAACAGATCGAACAGATCCAGTGCCCAACCGAGGCACGAGGCCGCGACCGCACCCATCACCTGCCGCTGGTCGACCGCGGGCAAGGCGGCGCCATTTTGCGCTGCTACGGACAT > 308 CJJ81176_1607 identified_by_match_to_protein_family_HMM_PF00633;_match_to_protein_family_HMM_PF00730;_match_to_protein_family_HMM_TIGR01084 A/G-specific_adenine_glycosylase YP_001001263.1 11 MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDRAYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRARNLKKAALECVDKFEAKLPKEVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRVLSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVSKNAKCGICPLYDFCQGKFHTELYPRAKKILYESVNLNLFLFEFNKKFAIGQSQDKLYKGMYNFPFFKEGEYKLSKDMGFVGEFKHSYTKYKLNIKVYHQILNNENKNYEFKTLKELESTALSALSLKALKLIKL not_Epsilobacteria_Cavalier-Smith_2002 Campylobacter_jejuni_subsp._jejuni_81-176 Campylobacter_jejuni_subsp._jejuni_81-176 NC_008787 1523038..1524297 NA NA 1245:>1260 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000538.COMPLETENESS:_full_length. NA 27-APR-2010 Campylobacter_jejuni_subsp._jejuni_81-176,_complete_genome. NA Campylobacteraceae_Vandamme_and_De_Ley_1991 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Campylobacter_jejuni_A1W1M1_CAMJJ.gb Campylobacter_Sebald_and_Veron_1963_(Approved_Lists_1980)_emend._Vandamme_et_al._2010 121612099 Submitted_(10-JAN-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_008787 NA NA Campylobacterales purple_photosynthetic_bacteria_and_relatives NA 1260 NA genomic_DNA NA 81-176 NA Vibrio_jejuni NA complement NA NA NA NA NA not_Thiobacteria_Cavalier-Smith_2002 Campylobacter_jejuni_subsp._jejuni_(Jones_et_al._1931)_Veron_and_Chatelain_1973 NA NA NA prokaryotes NA 354242 Bacteria,_Proteobacteria,_Epsilonproteobacteria,_Campylobacterales,_Campylobacteraceae,_Campylobacter Direct_Submission NA NC_008787.1 ATGCAAGAGCTTACTCGCACGAAAAAAATTCGCTCTATTATTGCTGCAAGTAGCGGAAATTTAGTAGAGTGGTTTGACTTTTATATCTACGCTTTTACAGCAACTTATTTTGCTCATACTTTTTCAACTTCAGATAATCCTGTTATCCAGCAAATCAATGCCTTTGGGGTTTTTGCAGCAGGGTTTTTTATGCGTCCTATAGGCTCTTGGCTTTTTGGCTCTTTAGCTGATAAAGTAGGTCGTAAAAAATCTATGGTTATATCAGTGGTTTTAATGGCTTTGGGCTCTTTTATGATAGCAGCCTTGCCAAGCAAAGATACAGTGGGAGATCTTGCTATTATCTTACTTTTAATAGCAAGACTCATTCAAGGTCTTAGTGTAGGCGGGGAGTATGGCATAGCAGCTACTTATCTTTCAGAACTTGCTACAGAAGGAAAACGCGGTTTTTACTCATCTTTTCAGTATGTAACCCTAATAGGCGGTCAACTTTTGGCCGTTGCAAGCATTAGTATAATGTTTTTATTTTTTAGCATTGATGATATGAAAGATTATGCTTGGAGAATACTTTTTGTAATAGGCGGAATTTTAGCACTAGGCTCGCTTTTTGTAAGAAAAATGATGAATGAAAGTGCTACAAAACTTCACCAGCATGAAGATCGTGGTACTTTAAAAGCATTATGCAAATCTTGGAAACCTTTTTTAATGGTGCTTGGGGTTACTTCTGGAGGTTCTTTAGCTTTTTATACTATTACAACTTATACTAAAACTTTTATGGAAAATACGGGTATGGATAAAATGCTTGTTAATAATCTTTTCTTAGGTGCTTTATTTATACTAATGATCATTCAACCTCTTTTTGGATATATAGGAGATAAAATAGGTCACAAACGATCTTTAATTGTATTTTGTATTTTGGCATTGGTAGGAATTTATCCTATTTTTTCACTTATAGCCAATAACGCACAAAATAATCCTTCTTTGACATTTATGTTGGTGGTATTATTGTTTGTTATTTTAAGTTTTTATACTTCAGTTGCTGGGATTTTTAAAGCAAAACTTTTTCCTGAACATGTAAGAGCTTTAGGGACAGGTTTGGGTTATGCTATTTCAAATGCTGTTTTTGGAGGATCTGCTCCTTGGGTTGCTTTACAATTTAAAAATGCAGGTATAGAAAATGGCTTTTTTATATATATAGCTATTTTTACAATCATCATGCTTATAGCTACTTTATGTTTGCCTAAAAAATCAGAGCTTAATTAA > 309 CJJCF936_1710 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 alpha-ketoglutarate_permease EAQ57340.1 11 MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTSDNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAALPSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIGGQLLAVASISIMFLFFSIDDMKDYAWRILFVIGGILALGSLFVRKMMNESATKLHQHEDRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGALFILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVLLFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIENGFFIYIAIFTIIMLIATLCLPKKSELN not_Epsilobacteria_Cavalier-Smith_2002 Campylobacter_jejuni_subsp._jejuni_CF93-6 Campylobacter_jejuni_subsp._jejuni_CF93-6 AANJ01000002 72052..73311 Fouts,D._and_Nelson,K. NA 0:1260 NA NA 27-JAN-2006 Campylobacter_jejuni_subsp._jejuni_CF93-6_c_jejuni_subsp_jejuni_cf93_6_22,_whole_genome_shotgun_sequence. NA Campylobacteraceae_Vandamme_and_De_Ley_1991 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Campylobacter_jejuni_A3YJV8_CAMJE.gb Campylobacter_Sebald_and_Veron_1963_(Approved_Lists_1980)_emend._Vandamme_et_al._2010 85840025 Unpublished NA AANJ01000002 NA NA Campylobacterales purple_photosynthetic_bacteria_and_relatives NA 1260 NA genomic_DNA NA CF93-6 NA Vibrio_jejuni NA complement NA NA NA NA NA not_Thiobacteria_Cavalier-Smith_2002 Campylobacter_jejuni_subsp._jejuni_(Jones_et_al._1931)_Veron_and_Chatelain_1973 NA NA NA prokaryotes NA 360111 Bacteria,_Proteobacteria,_Epsilonproteobacteria,_Campylobacterales,_Campylobacteraceae,_Campylobacter Sequence_of_Campylobacter_jejuni_subsp._jejuni_CF93-6 NA AANJ01000002.1 TTAATTAAGCTCTGATTTTTTAGGCAAACATAAAGTAGCTATAAGCATGATGATTGTAAAAATAGCTATATATATAAAAAAGCCATTTTCTATACCTGCATTTTTAAATTGTAAAGCAACCCAAGGAGCAGATCCTCCAAAAACAGCATTTGAAATAGCATAACCTAAACCTGTCCCTAAAGCTCTTACATGTTCAGGAAAAAGTTTTGCTTTAAAAATCCCAGCAACTGAAGTATAAAAACTTAAAATAACAAACAATAATACCACCAACATAAATGTCAAAGAAGGATTATTTTGTGCGTTATTGGCTATAAGTGAAAAAATAGGATAAATTCCTACCAATGCCAAAATACAAAATACAATTAAAGATCGTTTGTGACCTATTTTATCTCCTATATATCCAAAAAGAGGTTGAATGATCATTAGTATAAATAAAGCACCTAAGAAAAGATTATTAACAAGCATTTTATCCATACCCGTATTTTCCATAAAAGTTTTAGTATAAGTTGTAATGGTGTAAAAAGCTAAAGAACCTCCAGAGGTAACCCCAAGTACCATTAAAAAAGGTTTCCAAGATTTGCATAATGCCTTTAAAGTACCACGATCTTCATGCTGGTGAAGTTTTGTAGCACTTTCATTCATCATTTTTCTTACAAAAAGCGAGCCTAGTGCTAAAATTCCGCCTATTACAAAAAGTATTCTCCAAGCATAATCTTTCATATCATCAATGCTAAAAAATAAAAACATTATACTAATGCTTGCAACGGCCAAAAGTTGACCACCTATTAGGGTTACATACTGAAAAGATGAGTAAAAACCGCGTTTTCCTTCCGTAGCAAGTTCTGAAAGATAAGTAGCTGCTATGCCATACTCCCCGCCTACACTAAGACCTTGAATAAGTCTTGCTATTAAAAGCAAGATAATAGCAAGATCGCCCACTGTATCTTTGCTTGGTAAGGCTGCTATCATAAAAGAGCCTAAAGCCATTAAAACCACTGATATAACCATAGATTTTTTACGACCTACTTTATCAGCTAAAGAGCCAAAAAGCCAAGAGCCTATAGGACGCATAAAAAATCCTGCTGCAAAAACCCCAAAGGCATTGATTTGCTGGATAACAGGATTATCTGAAGTTGAAAAAGTATGAGCAAAATAAGTTGCTGTAAAAGCATAGATATAAAAATCAAACCACTCTACTAAATTTCCGCTACTTGCAGCAATAATAGAGCGAATTTTTTTCGTGCGAGTAAGCTCTTGCAT > 310 CSQ_0907 NA alpha-ketoglutarate_permease EFV06965.1 11 MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTSDNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAALPSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIGGQLLAVASISIMFLFFSIDDMKDYAWRILFVIGGILALGSLFVRKMMNESATKLHQHEDRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGALFILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVLLFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIENGFFIYIAIFTIIMLIATLCLPKKSELN not_Epsilobacteria_Cavalier-Smith_2002 Campylobacter_jejuni_subsp._jejuni_DFVF1099 Campylobacter_jejuni_subsp._jejuni_DFVF1099 ADHK01000020 50698..51957 Takamiya,M.,_Ozen,A.,_Rasmussen,M.,_Alter,T.,_Gilbert,T.,_Ussery,D.W._and_Knochel,S. NA 0:1260 Strain_obtained_from_National_Food_Institute,_DTU_Food,_Soeborg,Denmark.##Genome-Assembly-Data-START##Assembly_Method_::_CLC_Genomic_workbench_software_v._3.7.1.Genome_Coverage_::_30xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 03-JAN-2011 Campylobacter_jejuni_subsp._jejuni_DFVF1099_gcj1099.assembly.28,_whole_genome_shotgun_sequence. NA Campylobacteraceae_Vandamme_and_De_Ley_1991 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Campylobacter_jejuni_E5Z7B5_CAMJE.gb Campylobacter_Sebald_and_Veron_1963_(Approved_Lists_1980)_emend._Vandamme_et_al._2010 315927570 J._Bacteriol._193_(19),_5546-5547_(2011) NA ADHK01000020 NA NA Campylobacterales purple_photosynthetic_bacteria_and_relatives 21914871 1260 NA genomic_DNA NA DFVF1099 NA Vibrio_jejuni NA complement NA NA NA NA NA not_Thiobacteria_Cavalier-Smith_2002 Campylobacter_jejuni_subsp._jejuni_(Jones_et_al._1931)_Veron_and_Chatelain_1973 NA NA NA prokaryotes NA 691336 Bacteria,_Proteobacteria,_Epsilonproteobacteria,_Campylobacterales,_Campylobacteraceae,_Campylobacter Genome_Sequences_of_Two_Stress-Tolerant_Campylobacter_jejuni_Poultry_Strains,_305_and_DFVF1099 NA ADHK01000020.1 TTAATTAAGCTCTGATTTTTTAGGCAAACATAAAGTAGCTATAAGCATGATGATTGTAAAAATAGCTATATATATAAAAAAGCCATTTTCTATACCTGCATTTTTAAATTGTAAAGCAACCCAAGGAGCAGATCCTCCAAAAACAGCATTTGAAATAGCATAACCTAAACCTGTCCCTAAAGCTCTTACATGTTCAGGAAAAAGTTTTGCTTTAAAAATCCCAGCAACTGAAGTATAAAAACTTAAAATAACAAACAATAATACCACCAACATAAATGTCAAAGAAGGATTATTTTGTGCGTTATTGGCTATAAGTGAAAAAATAGGATAAATTCCTACCAATGCCAAAATACAAAATACAATTAAAGATCGTTTGTGACCTATTTTATCTCCTATATATCCAAAAAGAGGTTGAATGATCATTAGTATAAATAAAGCACCTAAGAAAAGATTATTAACAAGCATTTTATCCATACCCGTATTTTCCATAAAAGTTTTAGTATAAGTTGTAATGGTGTAAAAAGCTAAAGAACCTCCAGAGGTAACCCCAAGTACCATTAAAAAAGGTTTCCAAGATTTGCATAATGCCTTTAAAGTACCACGATCTTCATGCTGGTGAAGTTTTGTAGCACTTTCATTCATCATTTTTCTTACAAAAAGCGAGCCTAGTGCTAAAATTCCGCCTATTACAAAAAGTATTCTCCAAGCATAATCTTTCATATCATCAATGCTAAAAAATAAAAACATTATACTAATGCTTGCAACGGCCAAAAGTTGACCACCTATTAGGGTTACATACTGAAAAGATGAGTAAAAACCGCGTTTTCCTTCCGTAGCAAGTTCTGAAAGATAAGTAGCTGCTATGCCATACTCCCCGCCTACACTAAGACCTTGAATAAGTCTTGCTATTAAAAGCAAGATAATAGCAAGATCGCCCACTGTATCTTTGCTTGGTAAGGCTGCTATCATAAAAGAGCCTAAAGCCATTAAAACCACTGATATAACCATAGATTTTTTACGACCTACTTTATCAGCTAAAGAGCCAAAAAGCCAAGAGCCTATAGGACGCATAAAAAATCCTGCTGCAAAAACCCCAAAGGCATTGATTTGCTGGATAACAGGATTATCTGAAGTTGAAAAAGTATGAGCAAAATAAGTTGCTGTAAAAGCATAGATATAAAAATCAAACCACTCTACTAAATTTCCGCTACTTGCAGCAATAATAGAGCGAATTTTTTTCGTGCGAGTAAGCTCTTGCAT > 311 CAWG_02025 NA predicted_protein EEQ43777.1 12 MENIIKDVEDKKSKLANDGFFAPILKLFLSKKLLYRLLLSTSLFPMQNGAGINAITYYSPAIFASFGITGSKAGLLSTGIFGILKAFAALVWMFCIVDRLGRRTALIYFSFPCSICMWYIGAYIKIAKPGLRVANGDTHQDAGGKAAQAMLYIWTIFYGSSWNGTPWVINSEIFSQEVRTLTQAINSMSNWFWAFIMGRFSGEAVKAIGYKFYFIFATCMAVFPIVIFFLYPETKGVPLEAVDYLFEVPAWRARPYAMAKYQKEYQKQNLSTSIPEEQLEKRLD Saccharomycetes Candida_albicans_WO-1 Candida_albicans_WO-1 CM000309 1580147..1581001 Butler,G.,_Rasmussen,M.D.,_Lin,M.F.,_Santos,M.A.,_Sakthikumar,S.,_Munro,C.A.,_Rheinbay,E.,_Grabherr,M.,_Forche,A.,_Reedy,J.L.,_Agrafioti,I.,_Arnaud,M.B.,_Bates,S.,_Brown,A.J.,_Brunke,S.,_Costanzo,M.C.,_Fitzpatrick,D.A.,_de_Groot,P.W.,_Harris,D.,_Hoyer,L.L.,_Hube,B.,_Klis,F.M.,_Kodira,C.,_Lennard,N.,_Logue,M.E.,_Martin,R.,_Neiman,A.M.,_Nikolaou,E.,_Quail,M.A.,_Quinn,J.,_Santos,M.C.,_Schmitzberger,F.F.,_Sherlock,G.,_Shah,P.,_Silverstein,K.A.,_Skrzypek,M.S.,_Soll,D.,_Staggs,R.,_Stansfield,I.,_Stumpf,M.P.,_Sudbery,P.E.,_Srikantha,T.,_Zeng,Q.,_Berman,J.,_Berriman,M.,_Heitman,J.,_Gow,N.A.,_Lorenz,M.C.,_Birren,B.W.,_Kellis,M._and_Cuomo,C.A. NA 0:855 On_Apr_14,_2006_this_sequence_version_replaced_gi:90659823.Annotation_was_added_to_the_scaffolds_in_June_2009. NA 10-JUN-2009 Candida_albicans_WO-1_chromosome_R,_whole_genome_shotgun_sequence. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_albicans_C4YME6_CANAW.gb Torulopsis 92090995 Nature_459_(7247),_657-662_(2009) fungi CM000309 predicted_protein NA budding_yeasts sac_fungi 19465905 855 R genomic_DNA NA WO-1 NA Candida_stellatoidea_type_I NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 294748 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida Evolution_of_pathogenicity_and_sexual_reproduction_in_eight_Candida_genomes NA CM000309.1 CTAGTCTAAACGTTTTTCCAATTGTTCCTCGGGTATGCTTGTAGATAGATTCTGTTTTTGGTATTCTTTCTGGTATTTTGCCATAGCATAAGGTCTGGCTCTCCAAGCAGGAACCTCAAACAAATAATCGACTGCTTCCAATGGCACTCCTTTTGTTTCTGGATATAAAAAGAAAATTACAATTGGAAACACCGCCATGCAAGTTGCAAAAATGAAATAGAATTTGTAGCCAATGGCTTTAACAGCTTCACCTGAAAACCGACCCATTATAAAAGCCCAGAACCAGTTAGACATTGAGTTTATTGCCTGAGTCAATGTTCTCACTTCTTGACTGAATATCTCAGAGTTGATAACCCAGGGTGTACCATTCCAACTAGAGCCGTAAAATATCGTCCAAATATATAACATTGCTTGTGCTGCTTTTCCACCGGCGTCTTGGTGTGTGTCACCATTTGCCACTCTTAAACCGGGTTTGGCAATCTTTATGTAGGCACCAATATACCACATACATATTGAACAAGGAAACGAGAAATATATTAATGCTGTCCTTCTTCCTAGCCGGTCGACAATACAAAACATCCAAACCAATGCCGCAAAAGCTTTCAATATCCCGAAAATACCTGTAGACAACAATCCAGCTTTCAGTCCCGTTATTCCAAATGATGCAAAAATAGCAGGACTGTAATAGGTGATTGCGTTGATACCTGCTCCATTTTGCATAGGAAACAAAGATGTTGACAACAACAAACGGTATAACAACTTTTTAGAAAGAAAGAGTTTCAAAATAGGTGCAAAAAACCCGTCGTTTGCTAACTTCAGCTTCTTATCTTCAACATCTTTAATTATATTTTCCAT > 312 CAWG_04480 NA conserved_hypothetical_protein EEQ46136.1 12 MATRDLPHSVGDFCFGWVDQIRSEITLGKSQDQLIKEDVLDDDETVETKVEIKNLWPAFASGAGLFSDGYVNAGISTVLSCLKKIYGDEFTKSNAMNNIGSIGFVGTVVGQLSFGYISDNFDRKTGMLTANVMLIFFTLMCAVASWGTTVQGFFACLTVWRFFLGIAIGAEYPTSSVIASEFANQLPSGHRNRYFSWFTNAMIDFGFVVSAFVPLVLLWIFTPRHLRAVWRLSIGLGVIPPLILFFIRLKMDNSKSFKKMNMKRVNYSKYPWWLIIKFYWFRLTVVSLIWFIYDFSVYSFGTFNTIIIGEVIPNGTLYENWGWSVVFNLFYMPGAFLGAFVGDYLGPRLTLAIGVGAQGIIGIAMSACLKSLKKHVAGFVVVFGIFSTFGEFGPGNNTGLLASKTCASSIRGQYYGIAAAIGKIGAFVGTWVFPAIQKHYAYSEDLSLQVPFYVSSALCLFSAFLTIFFVPPVGQDAINKEDRLFKEYLEENGFDIRLLGDSGVVTQYQEDEDIGVISDEKDDTVKVQQKNV Saccharomycetes Candida_albicans_WO-1 Candida_albicans_WO-1 CM000311 191149..192747 Butler,G.,_Rasmussen,M.D.,_Lin,M.F.,_Santos,M.A.,_Sakthikumar,S.,_Munro,C.A.,_Rheinbay,E.,_Grabherr,M.,_Forche,A.,_Reedy,J.L.,_Agrafioti,I.,_Arnaud,M.B.,_Bates,S.,_Brown,A.J.,_Brunke,S.,_Costanzo,M.C.,_Fitzpatrick,D.A.,_de_Groot,P.W.,_Harris,D.,_Hoyer,L.L.,_Hube,B.,_Klis,F.M.,_Kodira,C.,_Lennard,N.,_Logue,M.E.,_Martin,R.,_Neiman,A.M.,_Nikolaou,E.,_Quail,M.A.,_Quinn,J.,_Santos,M.C.,_Schmitzberger,F.F.,_Sherlock,G.,_Shah,P.,_Silverstein,K.A.,_Skrzypek,M.S.,_Soll,D.,_Staggs,R.,_Stansfield,I.,_Stumpf,M.P.,_Sudbery,P.E.,_Srikantha,T.,_Zeng,Q.,_Berman,J.,_Berriman,M.,_Heitman,J.,_Gow,N.A.,_Lorenz,M.C.,_Birren,B.W.,_Kellis,M._and_Cuomo,C.A. NA 0:1599 On_Apr_14,_2006_this_sequence_version_replaced_gi:90659819.Annotation_was_added_to_the_scaffolds_in_June_2009. NA 10-JUN-2009 Candida_albicans_WO-1_chromosome_5,_whole_genome_shotgun_sequence. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_albicans_C4YQY3_CANAW.gb Torulopsis 92090993 Nature_459_(7247),_657-662_(2009) fungi CM000311 conserved_hypothetical_protein NA budding_yeasts sac_fungi 19465905 1599 5 genomic_DNA NA WO-1 NA Candida_stellatoidea_type_I NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 294748 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida Evolution_of_pathogenicity_and_sexual_reproduction_in_eight_Candida_genomes NA CM000311.1 TTATACATTTTTCTGTTGTACTTTAACGGTATCGTCTTTTTCATCAGAAATCACACCAATATCTTCATCTTCTTGATATTGAGTGACAACACCACTATCACCTAACAATCTTATATCAAACCCGTTTTCTTCTAAATATTCTTTAAACAATCTATCTTCTTTATTAATAGCATCTTGACCCACTGGCGGAACAAAGAAAATAGTTAAAAATGCACTGAAAAGACACAAGGCAGAACTGACATAAAATGGTACTTGTAAAGATAAATCTTCACTGTATGCATAATGTTTTTGAATTGCTGGGAATACCCAAGTACCCACAAAGGCACCAATTTTCCCAATTGCAGCGGCAATACCATAATATTGACCTCTAATTGATGAAGCACAAGTTTTCGATGCCAATAATCCGGTATTATTACCTGGTCCAAATTCACCAAACGTGGAAAAAATACCGAAAACAACGACAAATCCAGCTACATGTTTTTTCAAACTTTTCAAACATGCTGACATGGCAATACCAATGATCCCTTGAGCACCAACCCCGATTGCCAAAGTTAATCTTGGTCCAAGATAATCACCTACAAAGGCACCAAGAAATGCCCCTGGCATATAAAACAAATTGAACACAACTGACCACCCCCAATTTTCGTAAAGAGTTCCATTTGGTATGACTTCACCAATAATGATAGTATTGAAAGTTCCAAAAGAATAAACGGAAAAATCGTAGATGAACCAAATCAAAGAGACCACGGTTAAACGGAACCAATAGAATTTAATAATCAACCACCAAGGATATTTGCTATAATTGACTCTTTTCATATTCATTTTCTTGAATGATTTGGAATTATCCATTTTTAAACGGATGAAAAATAAAATTAATGGTGGAATCACCCCTAATCCAATACTTAATCTCCAAACGGCTCTTAAATGACGAGGAGTGAAAATCCATAATAAAACCAATGGAACAAACGCAGAAACAACAAACCCAAAATCAATCATAGCATTGGTGAACCAACTGAAATATCTATTTCTATGACCGGAAGGTAATTGGTTAGCAAATTCCGAAGCGATAACTGAAGAAGTTGGATATTCAGCACCAATAGCAATACCCAAGAAAAATCTCCATACTGTAAGACAAGCGAAAAACCCTTGAACCGTTGTCCCCCAAGAAGCAACAGCACACATTAATGTAAAGAAAATTAGCATTACATTAGCAGTTAACATACCGGTTTTTCTATCGAAATTATCGGAAATATAACCAAAACTTAATTGTCCCACCACCGTACCAACAAATCCAATAGATCCAATATTATTCATAGCATTAGATTTAGTAAATTCATCACCATAAATTTTTTTCAAACATGATAATACCGTACTAATACCAGCATTAACATATCCATCAGAAAATAAACCTGCGCCGGAAGCAAATGCTGGCCATAAATTTTTGATTTCAACTTTAGTTTCCACGGTTTCATCATCATCAAGAACATCTTCTTTAATTAATTGATCTTGACTTTTACCTAAAGTGATTTCACTTCGAATTTGATCAACCCAACCAAAACAAAAGTCACCAACTGAATGAGGTAAATCTCTAGTAGCCAT > 313 CaO19.8259 similar_to_C_terminus_of_glucose_transporter;_allele_of_CaO19.645 hypothetical_protein XP_712011.1 12 MRAKGVSLGSSFNWLMNFSVAISTPKFVANAKYGAYIFLGLMCVIGSMYVYFMVPETKNKTLDELDEVFGDFTGTSKKESELREKILKQVGLVDLLVGSDKELDSFRSKPEVEYKEKEAHSE Saccharomycetes Candida_albicans_SC5314 Candida_albicans_SC5314 XM_706918 NA Jones,T.,_Federspiel,N.A.,_Chibana,H.,_Dungan,J.,_Kalman,S.,_Magee,B.B.,_Newport,G.,_Thorstenson,Y.R.,_Agabian,N.,_Magee,P.T.,_Davis,R.W._and_Scherer,S. NA 0:369 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_139592). NA 28-MAY-2008 Candida_albicans_SC5314_hypothetical_protein_(CaO19.8259)_mRNA,_complete_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_albicans_Q59QM9_CANAL.gb Torulopsis 68488270 Proc._Natl._Acad._Sci._U.S.A._101_(19),_7329-7334_(2004) fungi XM_706918 NA NA budding_yeasts sac_fungi 15123810 369 R mRNA NA SC5314 NA Candida_stellatoidea_type_I NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 237561 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida The_diploid_genome_sequence_of_Candida_albicans NA XM_706918.1 ATGAGAGCTAAAGGTGTATCACTTGGTTCAAGTTTCAATTGGTTAATGAATTTTTCGGTTGCAATCTCAACTCCTAAATTTGTTGCCAATGCTAAATACGGAGCCTATATTTTTCTTGGTTTGATGTGTGTTATTGGTCTGATGTATGTTTATTTCATGGTTCCAGAAACTAAAAATAAGACTTTAGATGAATTGGACGAAGTCTTTGGAGATTTCACTGGTACTTCTAAAAAAGAATCTGAACTTCGTGAAAAAATACTTAAACAAGTTGGTTTGGTGGATTTGCTTGTTGGTTCTGATAAAGAGTTGGATTCTTTTCGTTCAAAACCAGAAGTTGAATATAAGGAAAAAGAAGCACACAGTGAATGA > 314 CaO19.12767 one_of_two_genes_similar_to_S._cerevisiae_JEN1_(YKL217W)_lactate_and_pyruvate_transporter;_allele_of_CaO19.5307 potential_lactate/pyruvate_transporter XP_717031.1 12 MTAADTHSITSADVQEHNRHIIRPPKFTWPAIRKYAITRVTSLWVGWDELKQYSWHEVLNPFEPLVEMNLHQWNFFFLGFWAWTWDALDFFVTSLNVSNIAEDLDSTVKDVSWGITLVLMLRTVGALIFGAIGDTYGRKWPYIINLSCLMVIQIGTGFVTTFQQFLGLRALFGVAMGGLFGICAAEALGDAPKKARGVLSGIFQEGYAFGYLLAVVFRRAIADTTEKTWRSVFWFSAGPPIILIIWRFINPETDSYQRQKERFDQGAVQKNSKAAEFKSQAKKALNQYWLIIVYLIFLMAGFNFSSHGSQDLYPTMLTKQYHYGKDKSTVVNVCANLGALAGGIVIAHLSTFIGRRTAILIGNVIAGIMIYFWAFHPMWITAFFMQFGIQGSWSVVPIHLSELSPPHFRSFVSGVSYQLGNLVSSASSTIEATIEEQIHDYGKTMAIFIGAVLAYLMFVVFIGPENRGAELGVERDDEYSAYDSDREDRGDSDLEEGNITQKTLEKPEVEHKE Saccharomycetes Candida_albicans_SC5314 Candida_albicans_SC5314 XM_711938 NA Jones,T.,_Federspiel,N.A.,_Chibana,H.,_Dungan,J.,_Kalman,S.,_Magee,B.B.,_Newport,G.,_Thorstenson,Y.R.,_Agabian,N.,_Magee,P.T.,_Davis,R.W._and_Scherer,S. NA 0:1542 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_139479). NA 28-MAY-2008 Candida_albicans_SC5314_potential_lactate/pyruvate_transporter_(JEN2)_mRNA,_complete_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_albicans_Q5A5U2_CANAL.gb Torulopsis 68477757 Proc._Natl._Acad._Sci._U.S.A._101_(19),_7329-7334_(2004) fungi XM_711938 NA NA budding_yeasts sac_fungi 15123810 1542 2 mRNA NA SC5314 NA Candida_stellatoidea_type_I NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 237561 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida The_diploid_genome_sequence_of_Candida_albicans NA XM_711938.1 ATGACTGCTGCTGATACTCATTCTATCACTAGTGCTGATGTTCAAGAACATAATAGACACATTATTCGTCCACCAAAATTCACTTGGCCCGCTATTCGAAAATATGCCATTACAAGAGTTACTTCATTATGGGTTGGATGGGATGAATTGAAACAATATTCCTGGCACGAAGTTCTTAATCCGTTTGAACCATTAGTGGAAATGAATTTACATCAATGGAATTTTTTCTTTTTGGGATTTTGGGCATGGACTTGGGATGCTTTGGATTTTTTTGTTACTTCATTAAATGTATCTAATATTGCTGAAGATTTAGATTCTACAGTTAAAGATGTATCTTGGGGGATCACATTGGTGTTGATGTTGAGAACGGTTGGGGCATTAATATTTGGGGCTATTGGTGATACATATGGTAGAAAATGGCCCTATATTATTAATTTATCATGTTTGATGGTGATTCAAATTGGTACTGGGTTTGTCACAACTTTTCAACAATTCTTAGGGTTGAGAGCATTATTTGGTGTTGCCATGGGTGGGTTGTTTGGTATTTGTGCTGCTGAAGCATTAGGTGATGCTCCTAAAAAGGCCAGAGGGGTGTTATCTGGTATTTTCCAAGAAGGTTATGCATTTGGTTATTTGTTAGCTGTTGTTTTCCGAAGAGCTATTGCTGATACCACAGAAAAAACTTGGAGATCAGTATTTTGGTTCAGTGCTGGTCCCCCAATCATTCTTATCATTTGGAGATTCATCAACCCAGAAACTGACTCTTATCAACGTCAAAAGGAAAGATTTGATCAAGGTGCTGTACAAAAGAATTCTAAAGCTGCTGAATTTAAATCTCAAGCCAAAAAGGCATTGAATCAATACTGGTTGATCATTGTCTACTTGATCTTTTTAATGGCTGGATTTAACTTTTCTTCTCATGGTTCTCAAGATTTATATCCAACAATGTTAACCAAACAGTATCATTACGGTAAAGATAAATCAACTGTTGTTAATGTGTGTGCCAACTTGGGTGCATTAGCTGGTGGTATTGTAATTGCTCATTTATCAACTTTTATCGGTAGAAGAACTGCAATTTTGATTGGTAATGTTATTGCTGGTATTATGATTTACTTCTGGGCATTCCATCCAATGTGGATCACTGCTTTTTTCATGCAATTTGGTATTCAAGGTTCTTGGTCAGTGGTGCCAATTCATTTATCAGAATTGTCTCCTCCACATTTCCGTTCATTTGTAAGTGGTGTCCTGTACCAATTGGGTAATTTAGTCAGTTCTGCATCTTCTACAATTGAAGCTACAATCGAAGAACAAATTCACGATTATGGTAAAACCATGGCTATTTTTATTGGTGCCGTTTTGGCTTATTTGATGTTTGTTGTTTTTATTGGTCCTGAAAACAGAGGTGCCGAATTGGGTGTTGAAAGAGATGACGAGTATAGTGCGTACGATAGTGATAGGGAAGACAGAGGTGATTCTGATCTTGAAGAAGGTAATATTACTCAAAAGACTTTGGAAAAACCAGAAGTTGAACATAAAGAGTAA > 315 CaO19.5447 potential_sugar_transporter_similar_to_S._cerevisiae_ITR1_(YDR497C)_myo-inositol_transporter;_allele_of_CaO19.12902 potential_myo-inositol_transporter XP_717819.1 12 MSTNPEKPTRNEDLFENSSSSSSVPHNKEASELESVNSTAEREGGEHGNILAQYTEEQVMQMGRNYAHKYDLDPDLFGRAAALARAPSAFNSMPFLTDEEKQGLYLEATKKWHIPRKLIEVIAVGAIAAATQGMDESTISGATLFYPKAFGVTEMKNADLIEGLVNSAPYLCCSVIACWTSDYWNRHLGRKWTIFWTCLISAVTCIWQGFVNNWWHLFIARFFLGFGIGVKSATVPAYAAECTPKHVRGALVMLWQFFTAVGIMFGFVSALAFYYVPHKSFGTGLNWRLMLGSACIPPIIVLFQIPFVPESPRWLMGKERHKEAFESLKALRFEEIAAARDCFYQYVLLKEEGTYDIPTWKRLIQMFTIRRNRNGAIGSWIVMFMQQFCGINVIAYYASSIFIKARYSEISALLASWGFGMINFVFAIPAFLTIDKFGRRNLLLFSFPLMGVFLLIAGFGFLIHDRQGQLAMVTTGIYIFSAIYSSSEGPVPFTYSAEAFPLYIRDLGMSWATATCWFFNFILAFTWPRLQNAFTPTGAFGWYAAWNVIGFFLVLWFLPETKGLTLEELDDVFAVPMYEHAVYRTKELLNGFQRVILRRNIPPMPPLYHHQRMAVTNPEWNDKTEVDHIE Saccharomycetes Candida_albicans_SC5314 Candida_albicans_SC5314 XM_712726 NA Jones,T.,_Federspiel,N.A.,_Chibana,H.,_Dungan,J.,_Kalman,S.,_Magee,B.B.,_Newport,G.,_Thorstenson,Y.R.,_Agabian,N.,_Magee,P.T.,_Davis,R.W._and_Scherer,S. NA 0:1893 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_139470). NA 28-MAY-2008 Candida_albicans_SC5314_potential_myo-inositol_transporter_(ITR1)_mRNA,_complete_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_albicans_Q5A7L9_CANAL.gb Torulopsis 68476338 Proc._Natl._Acad._Sci._U.S.A._101_(19),_7329-7334_(2004) fungi XM_712726 NA NA budding_yeasts sac_fungi 15123810 1893 3 mRNA NA SC5314 NA Candida_stellatoidea_type_I NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 237561 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida The_diploid_genome_sequence_of_Candida_albicans NA XM_712726.1 ATGTCTACAAATCCTGAAAAACCTACTAGAAACGAGGACTTGTTTGAAAACTCAAGTTCCTCATCCAGTGTTCCTCACAACAAAGAAGCCTCGGAGTTGGAATCGGTAAACTCTACTGCTGAAAGAGAAGGAGGCGAACATGGTAATATTTTAGCTCAGTACACTGAAGAGCAAGTAATGCAAATGGGCCGTAACTACGCCCACAAGTACGACTTGGACCCAGATTTGTTTGGAAGAGCTGCTGCCCTTGCTAGAGCACCTAGCGCCTTCAATTCCATGCCCTTTCTTACCGACGAAGAAAAACAAGGGTTGTATCTCGAAGCAACCAAGAAATGGCACATCCCGAGAAAATTGATTGAAGTTATTGCTGTTGGTGCTATTGCTGCTGCCACCCAAGGTATGGATGAAAGTACTATTTCTGGTGCTACCTTGTTTTACCCAAAAGCGTTTGGTGTCACAGAAATGAAAAACGCCGATTTAATCGAAGGGTTGGTCAACTCAGCACCATACTTGTGCTGCTCGGTCATTGCATGCTGGACATCCGATTACTGGAATAGACATTTGGGTAGAAAATGGACAATTTTCTGGACCTGCTTGATTTCGGCCGTCACTTGTATTTGGCAAGGGTTTGTCAACAACTGGTGGCATTTGTTTATTGCCAGATTCTTCCTTGGATTCGGAATTGGGGTCAAATCCGCTACTGTTCCTGCTTATGCCGCTGAATGTACACCAAAACACGTTAGAGGTGCCTTGGTCATGTTGTGGCAATTTTTCACTGCCGTGGGTATCATGTTTGGGTTTGTTTCAGCATTGGCATTCTACTATGTGCCCCACAAGAGTTTTGGTACGGGGTTGAACTGGAGATTAATGCTTGGATCCGCCTGTATCCCACCCATCATTGTCCTATTCCAAATCCCCTTTGTGCCAGAATCACCTCGTTGGTTAATGGGTAAAGAAAGACACAAAGAAGCATTTGAATCCCTAAAAGCCTTGCGTTTTGAAGAGATTGCTGCTGCTCGTGATTGTTTCTATCAGTATGTCTTGCTAAAAGAAGAAGGTACTTATGACATACCCACCTGGAAAAGATTAATCCAAATGTTCACCATCAGAAGAAATAGAAACGGGGCTATTGGGTCGTGGATCGTTATGTTTATGCAACAGTTCTGTGGTATCAACGTTATTGCTTATTATGCCTCCTCAATCTTTATCAAGGCAAGATACAGTGAGATCAGTGCCTTGCTTGCATCGTGGGGGTTCGGTATGATTAATTTTGTCTTTGCCATCCCGGCATTTTTGACAATCGACAAGTTTGGTCGTCGTAATTTGTTACTTTTTTCTTTCCCGCTAATGGGGGTTTTCCTATTGATTGCGGGGTTCGGGTTCTTGATCCACGACAGACAGGGTCAATTGGCTATGGTCACAACCGGCATCTACATCTTTTCAGCAATATACTCAAGTTCAGAAGGGCCAGTCCCATTCACATACTCTGCTGAAGCATTCCCATTATACATTCGTGATTTGGGTATGAGTTGGGCAACAGCAACTTGTTGGTTCTTTAACTTTATATTGGCGTTCACATGGCCACGATTGCAAAATGCATTTACTCCAACCGGGGCTTTTGGCTGGTACGCAGCATGGAACGTCATTGGGTTCTTCTTGGTGTTATGGTTCTTGCCCGAAACTAAAGGATTGACATTAGAAGAGTTGGACGATGTGTTTGCCGTGCCAATGTACGAGCATGCAGTATACCGTACCAAAGAGCTCTTAAACGGGTTCCAAAGAGTTATCTTGCGCCGTAACATTCCTCCAATGCCACCATTGTACCACCACCAAAGAATGGCCGTTACCAACCCCGAGTGGAACGATAAAACCGAAGTCGACCATATCGAGTAG > 316 CaO19_7071 similar_to_Q9C101|SPAPB1E7.08C_Schizosaccharomyces_pombe_BLASTX_E():_1e-47,_34%_identity_in_534aa_overlap hypothetical_protein XP_888682.1 12 MSDIEKKQTKISPASSVAHDEDTLANDELFQLTDSVLNKKLKLINDAIDEIGFTPYHLKLFFLNGMGYWTDTQLTYLESSVRTFVNYQFGYKYPVSNEMLAAGLLVGALFWGFSADLIGRRLAFNLTLLLSALFTILTGVMNNMASYCIFVFLSCFAAGGNLVLDTCIFLEFLPHKDQWLLTFFAFFWGIGQTIAVALAYAFLPNNSCESADNCPSHINRGWRYVYYTNGSIVLAMAILRLTLIRLQETPKFLVSNNRDQEAVEILQRIAQKHNRTCSLTIEDLESLGKVEINDDYRKHIDIKGTFRLVTHHVQILFSNRTMARSSVLVFVSWLLLGISYPLYSSFLPVYLATRGANISAPDVHGVYRDNLISNCVSMGGPLIAGALLFCFPWLGRRGVLFIGGVASMAFLFGYTQIKTRAQNVALSSISFASMYIYYSALYAYTPEVFPSVARATGNAIAIACTRVMTCIVPVIAYYSNTSSSVPIWVCGAFVGVIGFLALLFPYEPSKQRVV Saccharomycetes Candida_albicans_SC5314 Candida_albicans_SC5314 XM_883589 NA Chibana,H.,_Oka,N.,_Nakayama,H.,_Aoyama,T.,_Magee,B.B.,_Magee,P.T._and_Mikami,Y. NA 0:1545 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_007436).COMPLETENESS:_incomplete_on_both_ends. NA 23-JUL-2008 Candida_albicans_hypothetical_protein_(CaJ7_0062)_mRNA,_complete_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_albicans_Q5AFJ7_CANAL.gb Torulopsis 77022475 Genetics_170_(4),_1525-1537_(2005) fungi XM_883589 NA NA budding_yeasts sac_fungi 15937140 1545 7 mRNA NA NA NA Candida_stellatoidea_type_I NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 237561 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida Sequence_finishing_and_gene_mapping_for_Candida_albicans_chromosome_7_and_syntenic_analysis_against_the_Saccharomyces_cerevisiae_genome NA XM_883589.1 ATGTCAGATATTGAAAAAAAACAAACAAAAATTTCACCTGCATCATCTGTGGCTCATGATGAAGATACTTTGGCCAACGACGAATTGTTCCAGTTAACTGACTCGGTTTTAAATAAAAAATTGAAATTAATTAACGACGCAATTGATGAAATTGGGTTTACCCCATATCATCTCAAGTTATTCTTTCTAAATGGAATGGGATATTGGACGGATACCCAATTAACATATCTTGAAAGTAGTGTTAGAACATTTGTCAACTATCAATTTGGCTACAAGTACCCTGTTTCAAATGAAATGTTAGCTGCGGGTTTGCTTGTGGGAGCACTATTTTGGGGGTTTTCTGCAGATTTGATTGGAAGACGTTTAGCTTTCAATTTAACATTATTATTAAGTGCACTTTTCACCATTTTAACTGGTGTCATGAACAATATGGCCTCATATTGTATCTTTGTATTTTTGAGTTGTTTTGCTGCTGGTGGTAATTTAGTTTTGGATACCTGTATCTTTTTAGAGTTCTTACCCCATAAAGACCAATGGTTATTGACCTTTTTTGCATTCTTTTGGGGTATTGGTCAAACCATCGCCGTTGCATTAGCATATGCATTTTTACCAAACAACAGTTGTGAGTCTGCTGACAACTGTCCTTCCCACATTAACCGTGGTTGGAGATACGTTTATTATACGAATGGATCCATTGTTTTAGCTATGGCTATTTTGAGATTAACCCTTATCAGATTGCAAGAGACTCCCAAATTCTTAGTTTCAAATAATCGTGACCAGGAAGCTGTGGAAATATTGCAAAGAATTGCTCAAAAGCACAACCGTACATGTTCCTTAACTATCGAGGATTTAGAAAGTTTAGGTAAAGTTGAAATCAATGACGATTACAGAAAACACATTGACATAAAGGGGACTTTTAGATTGGTTACCCATCATGTTCAGATTTTATTTTCAAATAGAACAATGGCAAGGTCTTCTGTATTAGTTTTTGTATCATGGCTCTTGTTAGGAATTTCTTATCCATTATATTCGTCATTCTTACCGGTATATTTGGCCACAAGAGGTGCAAATATTTCTGCACCAGACGTTCACGGAGTGTACCGTGACAACTTGATTTCCAATTGTGTCTCCATGGGTGGTCCTCTCATTGCTGGTGCATTGTTGTTTTGCTTTCCTTGGTTGGGTCGTCGGGGAGTTTTGTTTATTGGCGGTGTTGCTTCTATGGCATTTTTGTTCGGATACACTCAAATTAAAACAAGAGCCCAGAATGTGGCACTTTCATCAATATCATTTGCTTCTATGTACATTTACTATTCAGCCTTATACGCCTATACCCCTGAAGTATTCCCCTCAGTAGCTCGAGCAACCGGAAATGCAATTGCTATTGCCTGTACAAGAGTTATGACATGTATTGTGCCTGTTATTGCCTACTACTCCAATACTTCGTCGTCAGTCCCTATTTGGGTGTGTGGTGCATTTGTTGGAGTGATTGGGTTCTTAGCTTTACTCTTTCCATATGAGCCGAGTAAACAAAGGGTTGTATGA > 317 CD36_01840 Similar_to_C._albicans_HGT1 high-affinity_glucose_transporter,_putative XP_002416857.1 12 MSSKIERIFSGPALKINTYLDKLPKIYNVFFIASISTIAGMMFGFDISSMSAFIGADHYMRYFNSPGSDIQGFITSSMALGSFFGSIASSFVSEPFGRRLSLLTCAFFWMVGAAIQSSVQNRAQLIIGRIISGVGVGFGSAVAPVYGAELAPRKIRGLIGGMFQFFVTLGIMIMFYLSFGLGHINGVASFRIAWGLQIVPGLCLFLGCFFIPESPRWLAKQGQWEAAEEIVAKIQAHGDRENPDVLIEISEIKDQLLLEQSSKHIGYATLFTKKYLYRTFTAIFAQIWQQLTGMNVMMYYIVYIFQMAGYSGNSNLVASSIQYVINTCVTVPALYFIDKVGRRPLLIGGATMMMAFQFGLAGILGQYSIPWPDSGNDSVNIRIPDDSKSASKGAIACCYLFVASFAFTWGVGIWVYCAEIWGDNRVAQRGNAVSTAANWILNFAIAMYTPTGFKNISWKTYIIYGVFCFAMATHVYFGFPETKGKRLEEIGQMWEEHVPAWRSRSWQPTVPIASDAELVRKMEIEHQEDKLMNEDSNSESRENQV Saccharomycetes Candida_dubliniensis_CD36 Candida_dubliniensis_CD36 XM_002416812 NA Jackson,A.P.,_Gamble,J.A.,_Yeomans,T.,_Moran,G.P.,_Saunders,D.,_Harris,D.,_Aslett,M.,_Barrell,J.F.,_Butler,G.,_Citiulo,F.,_Coleman,D.C.,_de_Groot,P.W.J.,_Goodwin,T.J.,_Keane,T.,_Quail,M.A.,_Munro,C.A.,_Pain,A.,_Poulter,R.T.,_Rajandream,M.A.,_Renauld,H.,_Spiering,M.J.,_Tivey,A.,_Gow,N.A.R.,_Barrell,B.,_Sullivan,D.J._and_Berriman,M. NA 0:1638 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_012860).COMPLETENESS:_incomplete_on_both_ends. NA 26-JUN-2009 Candida_dubliniensis_CD36_high-affinity_glucose_transporter,_putative_(CD36_01840)_mRNA,_complete_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_dubliniensis_B9W6Y6_CANDC.gb Torulopsis 241948268 Unpublished fungi XM_002416812 NA NA budding_yeasts sac_fungi NA 1638 1 mRNA NA CD36 NA Candida_dubliniensis NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 573826 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida The_Candida_dubliniensis_genome_reveals_evolutionary_changes_associated_with_systemic_candidiasis NA XM_002416812.1 ATGTCGTCTAAGATTGAAAGAATCTTTTCTGGACCCGCTTTAAAAATCAACACTTATTTGGATAAGCTCCCAAAAATTTACAATGTTTTCTTCATTGCTAGTATATCCACCATTGCTGGTATGATGTTTGGTTTTGATATTTCCTCAATGTCTGCCTTCATTGGTGCCGATCATTATATGAGGTACTTTAATTCTCCAGGATCAGATATTCAAGGGTTTATTACTTCTTCCATGGCTTTAGGATCATTTTTCGGTTCGATTGCTTCTTCATTTGTTTCTGAACCTTTTGGTAGAAGATTATCATTGTTAACCTGTGCCTTCTTCTGGATGGTCGGTGCTGCTATTCAATCCTCAGTTCAGAATCGTGCTCAATTAATCATTGGTAGAATTATTTCTGGTGTTGGTGTTGGTTTTGGTTCTGCTGTTGCCCCAGTCTATGGTGCCGAATTGGCCCCAAGAAAAATTAGAGGTCTTATTGGTGGTATGTTCCAATTTTTTGTTACTTTAGGTATCATGATCATGTTTTACTTATCCTTCGGATTGGGCCACATTAATGGTGTCGCTTCATTCAGAATTGCTTGGGGACTTCAAATTGTTCCTGGTCTTTGTTTATTCTTGGGTTGTTTCTTTATTCCAGAATCTCCTCGTTGGTTGGCTAAACAAGGTCAATGGGAAGCTGCTGAAGAAATTGTTGCCAAGATTCAAGCTCATGGTGATCGTGAAAACCCCGATGTTTTGATTGAAATTTCCGAAATCAAAGATCAATTATTGTTAGAACAATCAAGCAAGCATATTGGATATGCTACTTTGTTTACCAAAAAATATCTTTATAGAACATTTACTGCTATTTTTGCACAAATTTGGCAACAGTTGACTGGTATGAACGTTATGATGTACTATATCGTTTATATTTTCCAAATGGCAGGTTATTCCGGTAACAGTAACTTGGTTGCTTCTTCTATTCAATATGTTATAAACACTTGTGTTACTGTACCTGCATTGTATTTTATTGATAAAGTGGGTAGAAGACCATTATTAATTGGTGGTGCTACTATGATGATGGCTTTCCAATTCGGTCTTGCTGGTATTTTGGGTCAATACTCAATTCCTTGGCCAGATAGTGGTAATGACTCAGTCAACATTAGAATTCCTGATGACAGTAAATCTGCCTCTAAAGGTGCCATTGCTTGTTGTTACTTATTCGTCGCTTCCTTTGCCTTTACTTGGGGGGTCGGTATTTGGGTCTATTGTGCTGAAATCTGGGGTGACAACAGAGTTGCTCAACGTGGTAATGCTGTTTCCACTGCTGCCAACTGGATTTTGAATTTCGCTATTGCCATGTATACCCCAACTGGTTTCAAAAATATTAGCTGGAAAACATATATCATTTATGGTGTCTTTTGTTTTGCTATGGCTACTCATGTCTACTTTGGATTCCCGGAAACCAAGGGTAAAAGATTGGAAGAAATTGGTCAAATGTGGGAAGAACATGTTCCTGCTTGGAGATCGAGATCTTGGCAACCAACCGTTCCTATTGCCTCCGACGCCGAATTAGTAAGAAAAATGGAAATTGAACATCAAGAAGACAAATTGATGAATGAAGATTCCAACTCTGAATCTAGAGAAAACCAAGTCTAA > 318 CD36_17400 11_probable_transmembrane_helices_predicted_for_ZZZ2370_by_TMHMM2.0_at_aa_20-37,_81-103,_115-137,_174-196,_203-222,_306-328,_341-363,_373-392,_399-421,_436-458_and_465-487;_In_C._albicans:_putative_glucose_transporter_of_the_major_facilitator_superfamily;_the_C._albicans_glucose_transporter_family_comprises_20_members;_12_probable_membrane-spanning_segments;_regulated_by_Nrg1p. glucose_transporter_of_the_major_facilitator_superfamily,_putative XP_002418217.1 12 MPSTTSKHNFLDKRHSITPLLGWSTFIICLSALQFGYHLAELNAPADVLSCNFKKPGPLPSYKDTVWSHFHFNQCINMTEQGVALITTMFTIGGLLASIILGITSISTNYGRKHLCIISALFYVLGSFSMSFSQTVWQINLGRIFSGVGAGSSLIVSPILINELAPLNHRGLLGSLMQLAVSVGIFVAQIVSYVYSNDQQWRLIFLVAGLIGVVQFVGLLTVPESPKWLTMAKNDVERATFILKGLRSDESTVNHEIQHWGNLTTNSSPDDEVSSLLSDGSSSSQNLPSIPTKDFFMERKYRKQMIAVVLIMTGQQLVGINAITYYGVKILNKLFSGSNTGNLVLVLNCVFSGTNVAASIAVAPLIDKWGRKPLLMTSITMCAVCTTILAVGIPNRYDIAVVTACIGFVTGWALGLGPLPFLMISEFTGHDVVATAQSLGTVMNWGSNMLVAILFPVLTDTFGIGMVFWVFVINSLVYGFGFYHYVPETKGFTHSHDVWERFS Saccharomycetes Candida_dubliniensis_CD36 Candida_dubliniensis_CD36 XM_002418172 NA Jackson,A.P.,_Gamble,J.A.,_Yeomans,T.,_Moran,G.P.,_Saunders,D.,_Harris,D.,_Aslett,M.,_Barrell,J.F.,_Butler,G.,_Citiulo,F.,_Coleman,D.C.,_de_Groot,P.W.J.,_Goodwin,T.J.,_Keane,T.,_Quail,M.A.,_Munro,C.A.,_Pain,A.,_Poulter,R.T.,_Rajandream,M.A.,_Renauld,H.,_Spiering,M.J.,_Tivey,A.,_Gow,N.A.R.,_Barrell,B.,_Sullivan,D.J._and_Berriman,M. NA 0:1512 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_012861).COMPLETENESS:_incomplete_on_both_ends. NA 26-JUN-2009 Candida_dubliniensis_CD36_glucose_transporter_of_the_major_facilitator_superfamily,_putative_(HGT20)_mRNA,_complete_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_dubliniensis_B9WAU7_CANDC.gb Torulopsis 241950989 Unpublished fungi XM_002418172 NA NA budding_yeasts sac_fungi NA 1512 2 mRNA NA CD36 NA Candida_dubliniensis NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 573826 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida The_Candida_dubliniensis_genome_reveals_evolutionary_changes_associated_with_systemic_candidiasis NA XM_002418172.1 ATGCCGAGCACTACCTCTAAACACAACTTTCTTGATAAAAGACATAGCATCACTCCGCTTCTAGGATGGTCCACATTTATTATATGCCTATCAGCTTTACAATTTGGATATCATTTAGCTGAACTAAATGCACCTGCAGATGTGTTGTCCTGTAATTTCAAAAAACCAGGACCTTTACCTTCATACAAAGATACTGTTTGGTCCCATTTCCATTTCAATCAATGCATAAATATGACAGAACAAGGTGTTGCTCTAATCACAACAATGTTTACTATTGGTGGTTTGCTTGCTTCAATAATATTGGGCATTACATCAATATCTACAAATTATGGAAGAAAGCACTTGTGTATCATTTCTGCTTTGTTCTATGTCTTGGGATCATTCTCGATGAGTTTTAGTCAAACCGTTTGGCAGATTAATCTAGGGAGAATATTTAGTGGGGTTGGTGCTGGGAGCTCGTTGATTGTATCTCCAATATTAATTAATGAGTTGGCACCTCTCAATCATAGAGGGTTATTGGGTTCATTAATGCAATTAGCTGTGTCAGTAGGAATATTTGTTGCACAGATTGTATCATACGTTTACTCCAATGACCAGCAATGGAGGTTGATATTTTTAGTGGCAGGCTTAATTGGCGTTGTTCAATTTGTTGGTTTGTTGACTGTCCCTGAGTCCCCCAAATGGTTAACCATGGCAAAGAATGATGTAGAACGGGCTACATTCATATTAAAGGGGTTGAGATCTGATGAATCAACAGTGAATCATGAAATCCAACATTGGGGAAACTTGACAACAAATAGCTCTCCTGATGATGAAGTTAGTCTGTTGTTATCTGATGGCTCTTCACTGTCACAAAACCTTCCACTGATTCCAACTAAAGATTTTTTTATGGAACGAAAGTATCGCAAGCAGATGATTGCTGTTGTGTTGATTATGACGGGACAACAGCTAGTTGGTATAAATGCAATTACGTACTATGGTGTTAAAATTTTAAATAAACTATTCAGCGGATCTAACACTGGAAATCTTGTCTTGGTACTTAACTGCGTCTTTTCCGGAACAAACGTGGCAGCATCAATTGCTGTAGCTCCGTTAATTGATAAATGGGGAAGGAAGCCGTTACTAATGACAAGCATAACAATGTGTGCAGTTTGCACTACCATCTTGGCCGTTGGTATACCAAACAGATACGATATTGCGGTTGTCACAGCCTGTATTGGATTTGTTACTGGATGGGCATTGGGTTTGGGACCACTCCCTTTCTTAATGATAAGTGAGTTTACTGGCCATGATGTTGTCGCTACGGCTCAATCTTTAGGTACAGTTATGAATTGGGGTTCAAATATGTTGGTAGCGATACTCTTCCCAGTTTTAACAGATACTTTTGGTATTGGGATGGTGTTTTGGGTTTTTGTTATAAACTCATTGGTGTATGGTTTTGGATTCTACCACTATGTTCCTGAAACTAAAGGCTTCACTCATTCTCATGACGTGTGGGAGCGTTTTTCATAG > 319 CD36_28770 spliced_gene proton-coupled_fructose_symporter,_putative XP_002421920.1 12 MSSVSSEKNSGLFGKDVYDETKENKPKYEHDEGLEFGSDFDFDGEFEKYAAMGAAEKQSGAWMTNFKNLEFPLGVSPSTLVTTLGIFAAFCGILSGVDQSLISGASIGMDKSLHFNSHENSLVSSLMPLGAVAGSILLTPLQKFGRKKALMASCILYTIGAILCAAAPIPKELADGTFNNHRSRDVMYAGRFILGIGVGIEGGGVGVYISESVPSSKRGSLVSLYQLSIALGEVLGYAIAAIFYEVHGGWRFMVGSSLVFSTIVLIGLFFLPESPRYLVFKGKFGEAFNVFARLRDLGDRHSKIEFVQMVQAAEAERELRLTQNKSKVWFELVTVPRNRRALVYGVVMITLGQLTGINAVMYYLSTLMSRIGFSTKNSVFMSLVGGGSLLLGTIPAILYMDKFGRRVWGYNLVGFFIGLVLVGVGYSIDIETNLAAAEGVYLTGLILYMGFFGSYACLTWVVPAESFSLGTRSQGMTICSALLYLWAFTVTYNFNRMKEAMTYTGLTIGFYGGIAFLGFFYQVLFMPETKGKTLEEIDEIFEKPSRQLIKENLSGLKRFWGR Saccharomycetes Candida_dubliniensis_CD36 Candida_dubliniensis_CD36 XM_002421875 NA Jackson,A.P.,_Gamble,J.A.,_Yeomans,T.,_Moran,G.P.,_Saunders,D.,_Harris,D.,_Aslett,M.,_Barrell,J.F.,_Butler,G.,_Citiulo,F.,_Coleman,D.C.,_de_Groot,P.W.J.,_Goodwin,T.J.,_Keane,T.,_Quail,M.A.,_Munro,C.A.,_Pain,A.,_Poulter,R.T.,_Rajandream,M.A.,_Renauld,H.,_Spiering,M.J.,_Tivey,A.,_Gow,N.A.R.,_Barrell,B.,_Sullivan,D.J._and_Berriman,M. NA 0:1689 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_012867).COMPLETENESS:_incomplete_on_both_ends. NA 26-JUN-2009 Candida_dubliniensis_CD36_proton-coupled_fructose_symporter,_putative_(CD36_28770)_mRNA,_complete_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_dubliniensis_B9WLE6_CANDC.gb Torulopsis 241958401 Unpublished fungi XM_002421875 NA NA budding_yeasts sac_fungi NA 1689 R mRNA NA CD36 NA Candida_dubliniensis NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 573826 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida The_Candida_dubliniensis_genome_reveals_evolutionary_changes_associated_with_systemic_candidiasis NA XM_002421875.1 ATGCTGTCCGTTTCACTGGAAAAGAATTCTGGCTTGTTTGGAAAGGATGTCTATGACGAGACAAAAGAAAACAAGCCCAAATACGAGCACGACGAAGGGTTGGAGTTTGGGTCAGACTTTGACTTTGATGGCGAGTTTGAAAAGTATGCTGCCATGGGTGCTGCCGAAAAGCAGTCGGGCGCTTGGATGACCAATTTTAAAAACCTCGAATTCCCTCTTGGGGTATCTCCGTCGACGTTGGTCACGACGTTGGGTATATTTGCTGCCTTCTGTGGTATTCTTTCTGGTGTCGACCAGTCGTTGATCTCGGGTGCTTCCATCGGTATGGACAAGTCGTTGCACTTTAACAGCCACGAAAACTCGTTGGTATCGTCGCTCATGCCGTTGGGCGCAGTTGCTGGTTCTATTCTCCTCACCCCGTTGCAGAAGTTTGGGCGTAAGAAGGCGCTCATGGCATCCTGTATCTTATACACTATTGGTGCAATTTTGTGTGCAGCCGCACCCATCCCGAAAGAATTGGCTGATGGCACCTTCAACAACCATAGGTCTAGGGACGTCATGTACGCCGGAAGATTTATTTTGGGAATTGGTGTGGGCATTGAAGGTGGTGGTGTTGGTGTGTACATCAGTGAGTCGGTGCCCAGTAGCAAGCGTGGGAGTCTTGTTTCGCTTTACCAACTCAGTATTGCCCTTGGGGAGGTGTTGGGGTATGCCATTGCTGCTATTTTCTACGAGGTGCATGGAGGGTGGCGTTTCATGGTTGGCTCCTCGTTGGTGTTCTCCACCATTGTGTTGATTGGTCTTTTCTTTTTGCCAGAGTCGCCGCGTTACTTGGTGTTCAAGGGGAAGTTTGGCGAAGCATTCAATGTGTTTGCGCGGTTGAGAGACTTGGGCGACAGACACAGCAAGATCGAGTTTGTCCAGATGGTCCAGGCTGCGGAGGCAGAAAGAGAGTTGCGTCTCACACAGAACAAGAGCAAGGTGTGGTTTGAGTTGGTCACCGTCCCCAGAAACCGCCGTGCCTTGGTGTACGGTGTTGTGATGATCACCTTGGGTCAGTTGACCGGTATCAATGCTGTAATGTACTACTTGTCGACGTTGATGAGCAGAATCGGGTTTTCCACAAAGAACTCAGTGTTCATGTCCTTGGTAGGTGGCGGGTCGTTGCTTCTTGGTACCATTCCGGCAATCTTGTACATGGACAAGTTTGGCCGTCGTGTGTGGGGGTATAACCTTGTTGGGTTCTTCATTGGGTTGGTGTTGGTTGGAGTTGGATACTCGATCGACATCGAAACAAACTTGGCTGCCGCTGAAGGGGTCTATCTCACTGGTCTTATTTTGTACATGGGCTTTTTCGGGTCGTATGCCTGTTTGACATGGGTTGTGCCAGCCGAATCGTTTTCGCTTGGGACTAGATCTCAGGGTATGACCATTTGCTCGGCGTTGTTGTATTTGTGGGCGTTCACTGTCACATACAATTTCAACAGAATGAAGGAGGCCATGACGTACACGGGGTTGACGATTGGGTTCTACGGTGGTATTGCGTTCCTTGGTTTCTTCTACCAGGTGTTGTTCATGCCAGAGACCAAGGGTAAGACTTTGGAAGAAATCGACGAGATATTTGAAAAACCATCGAGACAGCTTATCAAGGAGAATCTTCTGGGCTTGAAGAGATTCTGGGGTCGTTAA > 320 CD36_33400 Similar_to_S._cerevisiae_HXT4;_low-affinity_glucose_transporter,_putative glucose_transporter_of_the_major_facilitator_superfamily,_putative XP_002422280.1 12 MSDDKTTATYESHLKQDSMSSTSSQSIEQIASPIKPEPEKKSWFKMKNLFEKVEDRPTPPQVYNYRVYMTAIMASAAAIIIGYDGGFIGGTVALDSFKNEFGLDKSAHSSFIISNVISVFHAGCFFGALFSYPFSFYLGRRIPLIFAAVLITAGSGIMLAANSSVGLGPIYAGRVMAGIAVGFSTNLTVVYISEIAPPAIRGQLTSSYEIGWRVGDLVGFWINYGVDSHIPDGKKQWYIPFAIQLIPSGLFLLGSIFMKESPRWLMQVGRYDEAIKNLTWFRQLPEDDEYIVYEVNQVKESIEEQKQKIGLGIMDPFYEVFFNNKQVLRRLLITMTIYVVCNFLGIQSINYYSPILFQGLGVKGTNASLFSTGMFGVVKFICTFIYILFIVDTIGRRKAFMASSTVCSLCFWYIGAYLKLNNPTKPGVSAGPGGKAAIAMMYIWIASFILAWSGGPFVVGSEVFDQNIRSFVQAINAAMSWVPIFIMSRFTTNMIRAMDYGIYFFFAALALATIPFLYFCLPETKGIALEDMDRLFSSELPAWRAHDILMKRVQHETEEVFHENHKHGLFEAVDNKPRTENVEDILVNKEEK Saccharomycetes Candida_dubliniensis_CD36 Candida_dubliniensis_CD36 XM_002422235 NA Jackson,A.P.,_Gamble,J.A.,_Yeomans,T.,_Moran,G.P.,_Saunders,D.,_Harris,D.,_Aslett,M.,_Barrell,J.F.,_Butler,G.,_Citiulo,F.,_Coleman,D.C.,_de_Groot,P.W.J.,_Goodwin,T.J.,_Keane,T.,_Quail,M.A.,_Munro,C.A.,_Pain,A.,_Poulter,R.T.,_Rajandream,M.A.,_Renauld,H.,_Spiering,M.J.,_Tivey,A.,_Gow,N.A.R.,_Barrell,B.,_Sullivan,D.J._and_Berriman,M. NA 0:1779 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_012867).COMPLETENESS:_incomplete_on_both_ends. NA 26-JUN-2009 Candida_dubliniensis_CD36_glucose_transporter_of_the_major_facilitator_superfamily,_putative_(CD36_33400)_mRNA,_complete_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_dubliniensis_B9WMH1_CANDC.gb Torulopsis 241959121 Unpublished fungi XM_002422235 NA NA budding_yeasts sac_fungi NA 1779 R mRNA NA CD36 NA Candida_dubliniensis NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 573826 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida The_Candida_dubliniensis_genome_reveals_evolutionary_changes_associated_with_systemic_candidiasis NA XM_002422235.1 ATGTCTGACGATAAAACTACCGCAACATACGAGTCACATTTAAAGCAGGATTCTATGTCATCAACAAGCTCTCAGTCTATTGAGCAAATAGCATCACCAATCAAACCAGAACCAGAAAAGAAATCATGGTTTAAAATGAAAAACTTGTTCGAAAAAGTGGAAGATAGACCAACTCCACCACAGGTTTATAATTATAGAGTTTATATGACTGCTATTATGGCATCTGCTGCTGCCATTATCATCGGGTATGATGGTGGGTTTATTGGTGGTACTGTTGCTTTAGATTCGTTCAAGAACGAGTTTGGTCTCGACAAATCAGCACATTCTAGTTTTATTATATCCAATGTCATATCGGTTTTCCATGCTGGTTGTTTCTTTGGTGCATTGTTTTCTTATCCATTCTCATTTTATCTCGGTAGACGTATTCCATTAATCTTTGCTGCAGTCTTAATCACTGCCGGGTCTGGTATCATGTTGGCTGCAAACTCTAGTGTCGGGTTGGGTCCAATCTATGCTGGTAGGGTCATGGCAGGTATTGCAGTTGGGTTCTCCACTAACTTGACAGTGGTGTATATATCGGAAATTGCTCCACCAGCAATCAGAGGTCAATTAACCAGTAGTTATGAAATTGGTTGGAGAGTTGGAGACCTCGTTGGGTTTTGGATCAACTATGGGGTCGACTCTCATATTCCTGATGGTAAAAAACAATGGTACATTCCGTTTGCTATTCAGTTAATTCCTAGTGGGTTGTTTTTGCTTGGAAGTATTTTCATGAAGGAATCCCCTAGATGGTTGATGCAAGTTGGCAGATATGATGAAGCTATTAAAAACTTGACCTGGTTCAGACAATTGCCAGAGGACGATGAATACATTGTTTATGAAGTCAATCAAGTCAAGGAATCCATTGAAGAACAAAAACAGAAAATCGGGCTTGGAATTATGGATCCATTTTATGAAGTGTTTTTCAACAATAAACAAGTTTTACGTCGTTTGTTAATCACCATGACCATCTATGTTGTTTGTAACTTTTTGGGTATTCAATCTATCAATTATTATTCCCCGATTCTTTTCCAAGGTTTAGGTGTCAAGGGAACTAATGCTTCGTTATTTTCAACCGGTATGTTTGGTGTGGTCAAGTTTATCTGTACATTTATTTACATTTTATTTATTGTTGACACAATTGGAAGAAGAAAAGCATTTATGGCATCATCCACCGTTTGTTCACTTTGTTTTTGGTATATTGGTGCGTACTTGAAATTGAACAACCCTACCAAACCAGGTGTCCTGGCCGGTCCAGGAGGCAAGGCTGCTATTGCCATGATGTATATTTGGATTGCTTCGTTTATCTTAGCTTGGTCAGGGGGTCCATTTGTTGTCGGTAGTGAAGTGTTTGATCAAAATATCAGATCTTTTGTTCAAGCTATAAATGCCGCTATGTCATGGGTGCCTATATTTATCATGTCAAGATTCACAACTAACATGATTCGTGCCATGGATTATGGTATTTATTTCTTTTTCGCGGCTTTGGCACTTGCCACTATCCCATTTCTTTACTTTTGCTTACCAGAAACAAAAGGTATTGCCTTGGAAGACATGGATAGATTATTTAGTTCAGAATTACCTGCTTGGAGAGCACATGATATTCTTATGAAACGTGTACAGCACGAAACCGAAGAAGTGTTTCATGAAAACCATAAACACGGTTTATTCGAAGCTGTTGATAATAAACCAAGGACAGAAAACGTTGAGGACATTTTGGTCAACAAAGAGGAGAAATAG > 321 CAGL0D02662g unnamed_protein_product;_highly_similar_to_uniprot|P23585_Saccharomyces_cerevisiae_YMR011w_HXT2_high-affinity_hexose_transporter_or_uniprot|P43581_Saccharomyces_cerevisiae_YFL011w_HXT10_or_uniprot|P39003_Saccharomyces_cerevisiae_YDR343c_HXT6 NA CAG58442.1 NA MSQAQSLSPSESAENSPVREVNVANSFKDDDFILEQKQTADVSAMSPEAEAPPKPISAYFTVICLCLMIAFGGFVFGWDTGTISGFVAQTDFKRRFGQQAADGSYYLSDVRTGLIVAIFNIGCAIGGLTLGRLGDMYGRRLGLMAVITVYVVGIVIQISSTTTWYQYFVGRIVSGLGVGGIAVLSPTLISETAPKHLRGTCVSFYQLMITLGIFLGYCTNYGTKTHTNSIQWRVPLGLCFAWALFMLVGMSMVPESPRFLVEKGRFEEARRSLARSNKVSMDDPIVTAEIENISAGVEAEKSAGNASWGELFSTKGKILQRVVMGIMIQSLQQLTGCNYFFYYGTTIFKAVGLEDSFQTSIILGIVNFASTFVALYVVDRFGRRKCLLWGSSTMAVCMVIFASVGVKSLYPNGKDQPSSTTAGNVMIVFTCLYIFCFATTWAPTAYVIVAETYPLRVKNRAMAIAVGFNWIWGFLIGFFTPFITTAINFYYGYVFMGCLVFSFFYVFFFVCETKGLTLEEVNEMYEEGVLPWKSAQWLPTTKRTSGYDVDAALHDDKPWYKRFA Saccharomycetes Candida_glabrata Candida_glabrata CR380950 278099..279793 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1695 This_is_an_updated_version_of_the_complete_genome_sequence._TheCandida_glabrata_sequence_is_made_of_13_chromosomes_(A_to_M)._Thesequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_to_http://cbi.labri.fr/Genolevures. NA 16-DEC-2008 Candida_glabrata_strain_CBS138_chromosome_D_complete_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_glabrata_Q6FW63_CANGA.gb Nakaseomyces 49524724 Nature_430_(6995),_35-44_(2004) fungi CR380950 NA NA budding_yeasts sac_fungi 15229592 1695 D genomic_DNA NA CBS_138 NA Torulopsis_glabrata NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 5478 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Nakaseomyces,_mitosporic_Nakaseomyces Genome_evolution_in_yeasts NA CR380950.1 CTAAGCAAATCTCTTGTACCATGGCTTGTCATCGTGCAAAGCAGCGTCCACATCGTAGCCACTGGTTCTCTTGGTAGTTGGTAGCCATTGAGCGGACTTCCATGGCAAGACGCCTTCTTCGTACATTTCATTGACTTCTTCCAAAGTCAAACCTTTAGTTTCGCAAACAAAGAAGAAGACGTAGAAGAAGGAGAAGACTAGACAGCCCATGAAGACGTAACCGTAGTAGAAGTTAATGGCAGTAGTAATAAATGGTGTGAAGAAACCAATCAAGAAACCCCAGATCCAGTTGAAACCAACAGCAATGGCCATAGCACGGTTTTTAACACGTAGTGGGTAGGTTTCGGCAACAATAACGTAAGCAGTTGGAGCCCAAGTAGTTGCAAAACAGAAGATGTATAGACAGGTGAAAACAATCATAACGTTACCAGCAGTAGTGGAGGATGGTTGGTCCTTACCGTTAGGATATAGACTCTTGACACCAACTGAAGCAAAGATGACCATGCAGACAGCCATTGTAGAGGAACCCCATAGCAAACACTTACGGCGACCAAAGCGGTCAACAACATACAAAGCGACAAAGGTGGAAGCAAAGTTGACAATACCCAAGATAATAGAAGTTTGGAAAGAATCTTCTAAACCAACAGCCTTGAAAATAGTAGTACCGTAGTAGAAGAAGTAGTTACAACCAGTCAATTGTTGCAAAGATTGGATCATGATACCCATGACAACACGTTGCAAGATCTTACCCTTGGTGGAAAACAATTCACCCCAAGAGGCATTACCTGCAGATTTCTCAGCTTCAACACCAGCGCTGATGTTTTCAATTTCAGCTGTGACAATTGGGTCATCCATGGAAACCTTGTTAGAACGGGCAAGAGAGCGTCTGGCCTCTTCAAATCTACCCTTCTCAACCAAGAATCTTGGTGATTCAGGAACCATGGACATACCAACAAGCATGAACAAAGCCCAGGCAAAACATAGACCTAGAGGAACTCTCCATTGAATAGAATTGGTGTGAGTCTTGGTACCATAGTTTGTACAGTAACCCAAGAAGATACCCAAAGTAATCATCAACTGGTAGAATGACACACAAGTACCTCTCAAATGCTTTGGAGCAGTTTCAGAAATTAAGGTTGGGGATAGCACAGCAATACCACCAACACCAAGACCGGAGACAATTCTACCAACAAAATATTGGTACCAGGTAGTGGTAGAAGAGATTTGAATTACAATACCAACAACGTAGACAGTAATAACAGCCATCAAACCAAGACGACGACCATACATATCACCAAGACGACCCAAGGTCAAACCACCAATGGCACAACCAATATTGAAAATAGCAACAATCAAACCAGTTCTCACATCAGATAAGTAGTAAGAACCATCAGCAGCTTGTTGTCCAAATCTTCTCTTGAAATCGGTCTGAGCAACAAAACCAGAAATAGTACCAGTATCCCAGCCAAAGACAAAACCACCGAATGCGATCATCAAACATAGACAGATCACAGTAAAGTAGGCTGAGATTGGTTTAGGTGGTGCTTCTGCTTCTGGGGACATCGCAGAAACATCAGCGGTTTGCTTCTGCTCCAAAATGAAGTCATCATCTTTGAAGCTGTTAGCAACATTGACTTCCCTGACTGGGGAGTTTTCGGCGCTTTCAGAAGGTGACAAACTTTGAGCTTGTGACAT > 322 NA NA putative_lactose_facilitator_1 CAO79524.1 NA MELEVYHGSKQSSIMSANHLDTKAQLDNFEDKTELEHLETDKGSSKDALDLSIPIADIEPPRLLSKPMVPMLFSCFIVYFVATTCGFDGSLMSSIYTQKDYLKFYNLDATSSTSTGLVFSMYNVGQIASAFFCPLMDLYGRKFVIIMGVYGIVISAVVTAVSKNVPTLIAGRFFLSFFTQLANTAAANYCTEIAPTRHRSRVAGFYNCLWYVGSIIAAFTAYGSERSFSGSNKAFRIPLWLQCACPGIVCIFGWLIPESPRWLVGKGRIEDARKMIAKYHCNGNTNDPLVEFEVAEIAEIAKYHCNGNTNDPLVEFEVAEIAETFATVSLESTWKVLDPRPMLRKRSDRYRAMLVVIMAFYGQFSGNNVCSYYLPTMLTNVGMTSQTTNVLMNACYSITSWISSLCGAYVHEIVGRRKMFMASSFGAALCLSGLTIATARYDVTAAKSASNAALAFIYLFGITFSFAFTPMQPIYPSEVSSNVLRSRNMILLNLTSGVAQFINQFAAPEAMKNIGFWFYVFYVFWDLSEVVVIYFYFVETKGRSLEELDEIFEAPNPRKASVAPRRDNEKV Saccharomycetes Candida_intermedia Candida_intermedia AM773682 NA Leandro,M.J.T.,_Goncalves,P._and_Spencer-Martins,I. NA 0:1716 NA NA 10-DEC-2010 Candida_intermedia_plf1_gene_for_putative_lactose_facilitator_1,_strain_PYCC_4715. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_intermedia_C6S3P3_9ASCO.gb Torulopsis 254527775 Unpublished fungi AM773682 NA NA budding_yeasts sac_fungi NA 1716 NA genomic_DNA NA PYCC_4715 NA Kluyveromyces_cellobiovorus NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 45354 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida Isolation_of_two_C._intermedia_putative_sugar_transporters_by_RT-PCR_with_degenerate_primers NA AM773682.1 ATGGAGTTAGAAGTCTACCATGGCTCGAAACAATCATCTATTATGAGTGCTAACCACTTAGACACAAAAGCTCAGCTTGATAATTTCGAGGACAAGACCGAACTCGAACACTTAGAGACAGACAAGGGTTCGTCCAAAGATGCATTGGACCTTCTGATTCCCATTGCCGACATCGAGCCTCCACGGCTTTTGTCCAAGCCAATGGTGCCAATGCTCTTCTCTTGTTTCATCGTCTACTTTGTTGCTACGACATGTGGTTTTGACGGTTCGTTGATGTCGTCCATTTACACCCAGAAGGACTACTTAAAGTTTTACAATCTTGATGCAACCTCGTCGACATCCACTGGTTTGGTGTTTTCCATGTATAACGTGGGACAGATTGCCAGTGCCTTTTTTTGTCCATTAATGGATTTGTACGGAAGGAAGTTTGTTATTATCATGGGTGTTTATGGCATTGTCATTTCTGCCGTGGTTACTGCCGTGTCCAAGAATGTACCCACGCTTATTGCTGGTAGATTCTTCTTGTCGTTTTTCACCCAGTTGGCCAACACTGCTGCTGCCAATTACTGTACTGAGATTGCTCCTACCAGACACAGGAGTAGAGTGGCTGGTTTCTACAACTGTCTTTGGTATGTTGGTTCCATCATCGCTGCATTCACCGCCTATGGTAGTGAGAGAAGCTTCAGTGGCAGCAACAAAGCATTCAGAATTCCCTTGTGGCTTCAGTGTGCTTGTCCAGGTATTGTGTGCATTTTTGGCTGGCTTATTCCCGAGTCTCCACGTTGGTTGGTTGGAAAGGGTAGAATTGAAGATGCCAGAAAGATGATCGCCAAGTACCACTGTAACGGCAACACCAACGACCCATTGGTTGAGTTTGAAGTGGCCGAGATCGCAGAGATCGCCAAGTACCACTGTAACGGCAACACCAACGACCCATTGGTTGAGTTTGAAGTGGCCGAGATCGCAGAGACCTTTGCTACTGTTTCTTTGGAGTCCACCTGGAAGGTGTTGGACCCACGTCCAATGTTGAGAAAGCGCTCAGACAGATATCGTGCAATGTTGGTGGTTATCATGGCATTCTACGGACAATTCTCCGGTAACAATGTCTGTTCCTATTACTTGCCTACCATGTTGACCAATGTTGGTATGACTTCTCAGACCACTAACGTGTTAATGAATGCATGCTACTCTATCACTTCGTGGATTTCTTCATTGTGCGGAGCCTACGTCCACGAGATCGTTGGCAGAAGAAAGATGTTCATGGCCTCATCGTTTGGTGCAGCCTTGTGTTTGTCCGGATTGACTATTGCTACTGCTAGATACGATGTCACTGCTGCCAAGCTGGCCTCCAACGCGGCCTTGGCCTTCATCTACCTCTTTGGTATTACTTTCTCGTTTGCATTCACGCCAATGCAGCCTATCTACCCATCAGAAGTTTCTTCAAATGTTTTGCGGTCCAGAAACATGATTCTCTTGAATTTGACATCTGGTGTTGCTCAGTTTATCAACCAATTCGCTGCACCAGAGGCCATGAAGAACATTGGATTCTGGTTTTACGTGTTTTACGTTTTTTGGGATCTTTCTGAGGTTGTGGTGATTTACTTCTACTTTGTGGAGACCAAGGGACGCTCTTTGGAGGAGTTGGATGAGATCTTCGAAGCCCCAAACCCAAGAAAGGCCAGTGTTGCTCCAAGAAGAGACAATGAGAAGGTGTAA > 323 CTRG_01165 Candida_DB_at_Institut_Pasteur_CTRG_01165 high-affinity_hexose_transporter_HXT6 XP_002546860.1 12 MSASDSTEANHNLEDKYESAPEGIDAAAADLNANQPWHAYIGIITMCVLIAFGGYVFGFDTGTIPGFVNMTDFQRRFGSPRGDGTYYFSNARTGMMIGLFNAGCAIGALFLSKLADLYGRRFAISVSMLIYISGVIVQIAAQHAWYQVMIGRIVTGVAVGTLSVVCPLFISEVSPKHLRGTLVVCFQLMITLGIFLGYCTTYGTKVYSDSRQWRVPLGLCFAWALFLIGGMTRMPESPRYLLSKDKIDDARIALAKVNKASPEDPALLAELQLLQAGVERERLAGSASWMTLIKGKPRIFERVFVGAMLQSLQQLTGDNYFFYYATMVFKAIGLDDSFETAIIIGVINFASTFVGIFAIEKLGRRLCLMLGSIGMSACFLMYSLIGSQHLYYHGSSGETRHRDGRAMIFVTSLYIFCFASTWAGGVYSVISELYPLKIKSKAMGVANACNWLWGFLISFFTSFITDAIHFYYGFVFMGCLFFSIFFVYFMVYETKGLDLGAVEELYNAGIPAWKSAGWVPPTAQEMSTTTGYARDAKPEEQQNEEQV Saccharomycetes Candida_tropicalis_MYA-3404 Candida_tropicalis_MYA-3404 XM_002546814 NA Butler,G.,_Rasmussen,M.D.,_Lin,M.F.,_Santos,M.A.,_Sakthikumar,S.,_Munro,C.A.,_Rheinbay,E.,_Grabherr,M.,_Forche,A.,_Reedy,J.L.,_Agrafioti,I.,_Arnaud,M.B.,_Bates,S.,_Brown,A.J.,_Brunke,S.,_Costanzo,M.C.,_Fitzpatrick,D.A.,_de_Groot,P.W.,_Harris,D.,_Hoyer,L.L.,_Hube,B.,_Klis,F.M.,_Kodira,C.,_Lennard,N.,_Logue,M.E.,_Martin,R.,_Neiman,A.M.,_Nikolaou,E.,_Quail,M.A.,_Quinn,J.,_Santos,M.C.,_Schmitzberger,F.F.,_Sherlock,G.,_Shah,P.,_Silverstein,K.A.,_Skrzypek,M.S.,_Soll,D.,_Staggs,R.,_Stansfield,I.,_Stumpf,M.P.,_Sudbery,P.E.,_Srikantha,T.,_Zeng,Q.,_Berman,J.,_Berriman,M.,_Heitman,J.,_Gow,N.A.,_Lorenz,M.C.,_Birren,B.W.,_Kellis,M._and_Cuomo,C.A. NA 0:1644 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020049).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2009 Candida_tropicalis_MYA-3404_high-affinity_hexose_transporter_HXT6,_mRNA. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_tropicalis_C5M5N5_CANTT.gb Torulopsis 255723861 Nature_459_(7247),_657-662_(2009) fungi XM_002546814 NA NA budding_yeasts sac_fungi 19465905 1644 NA mRNA NA MYA-3404 NA Lodderomyces_tropicalis NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 294747 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida Evolution_of_pathogenicity_and_sexual_reproduction_in_eight_Candida_genomes NA XM_002546814.1 ATGTCTGCCTCCGATTCTACAGAAGCAAACCATAATCTTGAGGACAAATATGAAAGTGCCCCAGAAGGAATCGATGCTGCTGCTGCTGATTTAAATGCCAATCAACCATGGCATGCATATATTGGTATTATTACCATGTGTGTCCTTATCGCTTTTGGTGGGTATGTGTTTGGTTTTGATACTGGTACTATTCCAGGTTTCGTCAATATGACTGATTTCCAAAGAAGATTTGGTTCTCCTCGTGGTGATGGTACTTACTACTTTTCTAATGCTAGAACTGGTATGATGATTGGTTTGTTCAATGCTGGTTGTGCTATTGGTGCTTTGTTTTTGTCTAAACTTGCTGATTTATATGGTAGAAGATTTGCCATTAGTGTTTCTATGCTTATTTATATTTCTGGTGTTATCGTTCAAATCGCTGCTCAACACGCTTGGTACCAAGTCATGATTGGTAGAATCGTTACTGGTGTCGCTGTTGGTACTTTATCTGTTGTCTGTCCGTTGTTTATTTCTGAAGTTTCTCCGAAACACTTGAGAGGTACTTTGGTTGTCTGTTTCCAATTGATGATTACCTTGGGGATCTTCTTGGGTTACTGTACTACTTACGGTACCAAGGTTTATTCCGACTCTAGACAATGGAGAGTTCCATTGGGTTTGTGTTTCGCCTGGGCTTTATTCTTGATTGGAGGTATGACTCGTATGCCAGAATCTCCACGTTATCTTCTCAGTAAAGACAAGATTGATGATGCCAGAATTGCTCTTGCCAAGGTTAACAAAGCTTCCCCAGAAGACCCAGCTTTACTTGCTGAATTACAATTACTTCAAGCTGGTGTTGAAAGAGAAAGATTAGCTGGTAGTGCTTCCTGGATGACTTTAATCAAAGGTAAACCAAGAATCTTTGAAAGAGTCTTTGTCGGTGCCATGTTACAATCCTTACAACAATTGACCGGTGATAATTATTTCTTCTACTATGCCACTATGGTCTTTAAAGCTATTGGTTTAGATGATTCCTTTGAAACTGCTATCATTATTGGTGTTATTAACTTTGCATCCACTTTTGTTGGTATCTTTGCCATTGAAAAATTGGGTAGAAGATTGTGTTTGATGCTTGGTTCAATTGGTATGTCTGCTTGTTTCTTGATGTATTCTTTGATTGGTTCTCAACATCTTTACTACCACGGTTCAAGTGGTGAAACCAGACACAGAGATGGTAGAGCTATGATTTTTGTTACCTCCCTTTATATTTTCTGCTTTGCCTCAACCTGGGCTGGTGGTGTTTACTCCGTTATTTCAGAATTGTACCCATTGAAGATCAAGAGTAAGGCTATGGGTGTTGCTAATGCCTGTAATTGGCTTTGGGGTTTCTTGATTTCATTCTTTACCTCCTTTATCACTGATGCTATTCACTTCTACTACGGTTTCGTCTTTATGGGTTGTTTGTTCTTCTCCATTTTCTTTGTTTACTTTATGGTCTACGAAACTAAAGGTCTTGACTTAGGTGCCGTTGAAGAATTGTATAATGCAGGTATTCCAGCTTGGAAATCTGCTGGTTGGGTACCACCAACTGCTCAAGAAATGTCTACTACTACTGGTTACGCTAGAGATGCTAAGCCAGAAGAACAACAAAATGAAGAACAAGTCTAG > 324 CTRG_03060 similar_to_potential_quinate_permease;_Candida_DB_at_Institut_Pasteur_CTRG_03060 hypothetical_protein XP_002548763.1 12 MVVVAATASFAAVIIGYDSGFIGGTVSLASFQNEFDMASMSSSKKTSIESNVVSVFQAGAFFGALFFYPIGEIWGRKLGLILSAFLLVFGAGISLESKHSTGLGAIYAGRVITGLGVGGCSGLAPIYISECSPAKIRGKLVGAWEMSWQVGGIVGYWINYGVLQNMESSRKQWLIPFAIQLIPSGLFFIGCFLIPESPRFLVQKGKIEEARTSLSTLRALPLDHPYSIFEMDTIVKDIEDRKSKLPGDGFFAPIRKIISSKKLLIRLVLSTSLFLMQNGFGINAITYYSPKIFASFGIAGSKSGLLSTGVFGILKAVAALIWISVIVDRLGRRTALIYFSIPCSICMWYIGAYIKIADPAARIASGTTKNDAGGRAAQALLYIWTLFYGSSWNGTPWVINSEIFSQEIRTVTQAINAMSNWFWAFIMGRFSGQAMDALGFKLYFIFATCMIVFPVIIFLFYPETKEVPLEAVDYLFEVPAWRARKYALAKYQSNRKA Saccharomycetes Candida_tropicalis_MYA-3404 Candida_tropicalis_MYA-3404 XM_002548717 NA Butler,G.,_Rasmussen,M.D.,_Lin,M.F.,_Santos,M.A.,_Sakthikumar,S.,_Munro,C.A.,_Rheinbay,E.,_Grabherr,M.,_Forche,A.,_Reedy,J.L.,_Agrafioti,I.,_Arnaud,M.B.,_Bates,S.,_Brown,A.J.,_Brunke,S.,_Costanzo,M.C.,_Fitzpatrick,D.A.,_de_Groot,P.W.,_Harris,D.,_Hoyer,L.L.,_Hube,B.,_Klis,F.M.,_Kodira,C.,_Lennard,N.,_Logue,M.E.,_Martin,R.,_Neiman,A.M.,_Nikolaou,E.,_Quail,M.A.,_Quinn,J.,_Santos,M.C.,_Schmitzberger,F.F.,_Sherlock,G.,_Shah,P.,_Silverstein,K.A.,_Skrzypek,M.S.,_Soll,D.,_Staggs,R.,_Stansfield,I.,_Stumpf,M.P.,_Sudbery,P.E.,_Srikantha,T.,_Zeng,Q.,_Berman,J.,_Berriman,M.,_Heitman,J.,_Gow,N.A.,_Lorenz,M.C.,_Birren,B.W.,_Kellis,M._and_Cuomo,C.A. NA 0:1494 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020056).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2009 Candida_tropicalis_MYA-3404_hypothetical_protein,_mRNA. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_tropicalis_C5MAG8_CANTT.gb Torulopsis 255727674 Nature_459_(7247),_657-662_(2009) fungi XM_002548717 NA NA budding_yeasts sac_fungi 19465905 1494 NA mRNA NA MYA-3404 NA Lodderomyces_tropicalis NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 294747 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida Evolution_of_pathogenicity_and_sexual_reproduction_in_eight_Candida_genomes NA XM_002548717.1 ATGGTAGTTGTTGCTGCCACTGCATCATTTGCGGCTGTGATCATTGGATATGATTCAGGGTTCATTGGTGGTACAGTCTCGTTGGCTTCTTTTCAAAATGAATTTGACATGGCCCTGATGTCATCATCTAAAAAGACAAGCATAGAATCAAATGTTGTATCGGTATTCCAAGCAGGTGCTTTCTTTGGAGCATTATTCTTTTATCCTATTGGTGAAATTTGGGGTAGGAAGTTGGGGTTAATTTTATCTGCATTCTTATTGGTCTTTGGTGCCGGAATTTCTCTTGAATCGAAACATTCAACAGGTTTGGGAGCCATATACGCTGGTAGAGTCATTACAGGATTAGGAGTTGGTGGCTGTTCTGGGTTGGCACCTATCTATATCAGTGAATGTTCTCCTGCAAAAATCAGAGGGAAATTGGTTGGAGCATGGGAAATGTCCTGGCAAGTTGGAGGTATTGTAGGGTATTGGATCAACTATGGAGTTCTCCAAAATATGGAATCATCAAGAAAACAATGGTTAATTCCGTTTGCAATCCAGCTAATACCTTCTGGATTATTTTTTATCGGATGCTTTTTAATACCAGAATCGCCGAGGTTCTTGGTCCAAAAAGGAAAGATCGAGGAAGCAAGAACAAGTCTCTCCACTTTAAGGGCATTACCGTTAGATCATCCTTATTCGATATTTGAAATGGATACCATCGTCAAAGATATAGAAGATAGAAAACTGAAGTTGCCAGGAGATGGGTTCTTTGCTCCTATAAGAAAAATAATTCTGTCAAAAAAGTTACTCATAAGATTAGTGTTATCTACGTCTTTGTTCCTTATGCAAAACGGCTTTGGTATTAATGCAATTACATACTATTCCCCCAAGATTTTTGCATCCTTTGGTATTGCTGGTTCAAAATCGGGATTATTGTCAACTGGGGTTTTTGGGATATTGAAAGCAGTTGCTGCATTAATTTGGATATCTGTAATAGTTGATCGATTAGGTCGAAGAACGGCATTGATCTACTTCTCCATCCCCTGCTCCATTTGTATGTGGTACATTGGTGCTTACATCAAAATAGCTGATCCCGCTGCCCGAATTGCTTCTGGTACAACAAAAAATGATGCTGGTGGAAGAGCAGCGCAGGCGTTGTTGTATATTTGGACATTATTTTATGGTCTGAGTTGGAATGGTACTCCTTGGGTTATTAATTCTGAGATATTTAGTCAGGAAATTAGAACAGTGACACAGGCTATTAATGCCATGTCGAATTGGTTTTGGGCATTCATAATGGGTCGTTTTTCTGGCCAAGCTATGGATGCTCTTGGTTTCAAATTGTATTTTATTTTCGCAACATGTATGATTGTTTTTCCAGTTATTATTTTCCTTTTCTATCCTGAAACAAAAGAAGTTCCTTTGGAAGCAGTTGATTATTTATTTGAAGTTCCAGCATGGAGAGCAAGAAAATATGCCCTTGCAAAATACCAACTGAATCGCAAGGCTTAG > 325 CTRG_05346 similar_to_potential_glycerophosphoinositol_permease;_Candida_DB_at_Institut_Pasteur_CTRG_05346 hypothetical_protein XP_002551048.1 12 MATRDLLSFGEIFKTIPQEITLGKSKEQLQKEDIVEDDETIETKVTVNSLWSGFTSGAGLFSDGYVNAGISIVLSCLKQIYGDEFTQSNAINNIGSIGFVGTVVGQLSFGYISDRIDRKGGMLAANVMLIIFTLLCAVGS Saccharomycetes Candida_tropicalis_MYA-3404 Candida_tropicalis_MYA-3404 XM_002551002 NA Butler,G.,_Rasmussen,M.D.,_Lin,M.F.,_Santos,M.A.,_Sakthikumar,S.,_Munro,C.A.,_Rheinbay,E.,_Grabherr,M.,_Forche,A.,_Reedy,J.L.,_Agrafioti,I.,_Arnaud,M.B.,_Bates,S.,_Brown,A.J.,_Brunke,S.,_Costanzo,M.C.,_Fitzpatrick,D.A.,_de_Groot,P.W.,_Harris,D.,_Hoyer,L.L.,_Hube,B.,_Klis,F.M.,_Kodira,C.,_Lennard,N.,_Logue,M.E.,_Martin,R.,_Neiman,A.M.,_Nikolaou,E.,_Quail,M.A.,_Quinn,J.,_Santos,M.C.,_Schmitzberger,F.F.,_Sherlock,G.,_Shah,P.,_Silverstein,K.A.,_Skrzypek,M.S.,_Soll,D.,_Staggs,R.,_Stansfield,I.,_Stumpf,M.P.,_Sudbery,P.E.,_Srikantha,T.,_Zeng,Q.,_Berman,J.,_Berriman,M.,_Heitman,J.,_Gow,N.A.,_Lorenz,M.C.,_Birren,B.W.,_Kellis,M._and_Cuomo,C.A. NA 0:423 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020060).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2009 Candida_tropicalis_MYA-3404_hypothetical_protein,_mRNA. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_tropicalis_C5MGZ2_CANTT.gb Torulopsis 255732248 Nature_459_(7247),_657-662_(2009) fungi XM_002551002 NA NA budding_yeasts sac_fungi 19465905 423 NA mRNA NA MYA-3404 NA Lodderomyces_tropicalis NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 294747 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida Evolution_of_pathogenicity_and_sexual_reproduction_in_eight_Candida_genomes NA XM_002551002.1 ATGGCTACTAGAGATTTGCTTAGTTTCGGTGAAATTTTTAAAACTATCCCACAAGAAATCACATTAGGTAAAAGTAAAGAACAATTACAGAAAGAAGATATAGTTGAAGATGATGAAACAATAGAAACAAAAGTTACCGTTAATTCTCTTTGGAGTGGATTCACATCTGGTGCTGGATTGTTCAGTGATGGATATGTTAATGCTGGGATTAGTATTGTCTTATCTTGTTTGAAACAAATTTATGGTGATGAATTCACCCAATCAAACGCTATCAACAATATTGGTTCCATTGGTTTCGTGGGTACCGTTGTTGGACAATTAAGTTTTGGTTACATATCTGATAGAATAGACAGAAAAGGAGGTATGTTGGCTGCAAATGTCATGTTGATCATTTTCACCCTTTTATGTGCTGTTGGTTCATAG > 326 CTRG_06100 similar_to_potential_maltose_permease;_Candida_DB_at_Institut_Pasteur_CTRG_06100 hypothetical_protein XP_002546622.1 12 MTTEEYRPEKKQASESIISIDDDKATTAHISNVDSRAEVDDYINKFLDMSNTARAEDERDKTMPLKECLKTFPKACFWSIAISTAIIMEGYDTNLLASFYAYQGFAKKFGKYYPDLGEYQIPAKDQLGLSMCYQTGGLIGVYIGGTFVDVWGYRPVLIPALISSIGLIFMQFFAPNISVLMAAYVLLGINWGSYQTTCVSYAMDVAPTTLRLYLTTYINCCWVFGQLISSGVIKAISNSTDPHAYRIAFAIQWAWPLPIALLVFLAPESPYFLVRKNRLTQAKRAISRLLSENKYIPDKNLIAESMLTKIQMTIKEEDAESEGSSILECFKGTNLRRTRIAAFTWLIQNITGSSLMGYSTYFYQQAGVAVSMSFTFSIIQYCLGIAGTLGSWFLSQRVGRFPIYFYGLCAMTVLLFLTGGLGCAKSKSASMATGSMLLIYTFVYDLTIGPMCYCIVGEIPSSKLRAKTVMLARNLYNVAGIIVAIVTPYMLNPTEWNWKAKSAFLWAGIAIASATWVYFELPETRGRTFAELDKLFAEGVPSRKFKTTFPKTFDAGELMEKMGNEGVKAVVNDTEHVEHVDVESRA Saccharomycetes Candida_tropicalis_MYA-3404 Candida_tropicalis_MYA-3404 XM_002546576 NA Butler,G.,_Rasmussen,M.D.,_Lin,M.F.,_Santos,M.A.,_Sakthikumar,S.,_Munro,C.A.,_Rheinbay,E.,_Grabherr,M.,_Forche,A.,_Reedy,J.L.,_Agrafioti,I.,_Arnaud,M.B.,_Bates,S.,_Brown,A.J.,_Brunke,S.,_Costanzo,M.C.,_Fitzpatrick,D.A.,_de_Groot,P.W.,_Harris,D.,_Hoyer,L.L.,_Hube,B.,_Klis,F.M.,_Kodira,C.,_Lennard,N.,_Logue,M.E.,_Martin,R.,_Neiman,A.M.,_Nikolaou,E.,_Quail,M.A.,_Quinn,J.,_Santos,M.C.,_Schmitzberger,F.F.,_Sherlock,G.,_Shah,P.,_Silverstein,K.A.,_Skrzypek,M.S.,_Soll,D.,_Staggs,R.,_Stansfield,I.,_Stumpf,M.P.,_Sudbery,P.E.,_Srikantha,T.,_Zeng,Q.,_Berman,J.,_Berriman,M.,_Heitman,J.,_Gow,N.A.,_Lorenz,M.C.,_Birren,B.W.,_Kellis,M._and_Cuomo,C.A. NA 0:1761 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020040).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2009 Candida_tropicalis_MYA-3404_hypothetical_protein,_mRNA. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candida_tropicalis_C5MJ57_CANTT.gb Torulopsis 255723376 Nature_459_(7247),_657-662_(2009) fungi XM_002546576 NA NA budding_yeasts sac_fungi 19465905 1761 NA mRNA NA MYA-3404 NA Lodderomyces_tropicalis NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 294747 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_mitosporic_Saccharomycetales,_Candida Evolution_of_pathogenicity_and_sexual_reproduction_in_eight_Candida_genomes NA XM_002546576.1 ATGACTACCGAAGAATACCGTCCTGAAAAGAAACAGGCTTCAGAATCAATCATCAGTATAGATGATGACAAAGCAACTACTGCTCATATTTCAAATGTTGATAGTAGAGCAGAAGTTGATGATTATATCAACAAATTCTTGGACATGTCCAATACTGCTAGAGCTGAAGATGAAAGAGATAAAACTATGCCTCTTAAAGAATGTCTTAAAACTTTCCCAAAAGCTTGTTTCTGGTCTATTGCTATTTCCACTGCTATTATTATGGAAGGTTACGATACCAACTTGCTTGCTTCCTTTTATGCTTATCAAGGTTTTGCTAAGAAATTCGGTAAATATTACCCAGATCTTGGTGAATACCAAATCCCAGCTAAAGACCAACTTGGTTTGTCTATGTGTTACCAAACCGGTGGTTTGATTGGTGTCTATATTGGTGGTACTTTTGTCGATGTCTGGGGTTATCGTCCAGTTCTTATTCCTGCTTTGATTAGTTCTATTGGTTTGATTTTCATGCAATTTTTTGCTCCAAACATTAGTGTCTTGATGGCTGCTTATGTTTTATTGGGTATTAACTGGGGTAGTTATCAAACCACTTGTGTTTCTTATGCTATGGATGTTGCTCCAACTACTTTGAGACTTTATCTTACTACTTACATTAACTGTTGCTGGGTCTTTGGTCAGTTAATTTCTTCTGGTGTTATTAAAGCCATCCTGAATCTGACGGATCCACATGCTTATAGAATTGCTTTTGCTATTCAATGGGCTTGGCCATTACCAATTGCTCTTCTTGTTTTCCTTGCCCCTGAGTCTCCATATTTCTTGGTTAGAAAGAATAGATTGACTCAAGCGAAACGTGCCATTAGTCGTTTGTTGTCTGAAAACAAATACATCCCAGACAAAAATTTGATTGCTGAAAGTATGTTGACTAAGATTCAAATGACCATCAAAGAAGAAGATGCTGAATCTGAAGGTTCATCTATTCTTGAATGTTTCAAAGGTACAAATCTTAGAAGAACTAGAATTGCTGCTTTCACTTGGTTGATTCAAAATATTACTGGTTCAAGTTTGATGGGTTACTCTACGTATTTCTACCAACAAGCTGGTGTTGCCGTTTCCATGTCATTCACCTTTTCTATCATTCAATACTGTTTGGGTATCGCTGGTACTCTTGGTTCTTGGTTCTTGTCTCAAAGAGTAGGTCGTTTCCCAATCTACTTTTACGGTTTATGTGCTATGACTGTTCTTTTATTCCTTACTGGTGGTTTAGGCTGTGCTAAATCCAAATCTGCATCCATGGCAACTGGTAGTATGCTTTTGATTTACACTTTTGTGTACGATTTAACCATCGGTCCAATGTGTTATTGTATTGTTGGTGAAATTCCATCTTCTAAATTAAGAGCTAAAACTGTCATGTTGGCAAGAAATTTGTATAACGTTGCTGGTATCATCGTTGCTATTGTTACTCCTTATATGTTGAATCCTACTGAATGGAACTGGAAAGCTAAATCCGCTTTCTTGTGGGCAGGTATTGCCATTGCTTCAGCTACTTGGGTTTATTTTGAATTACCAGAAACGAGAGGTAGAACATTTGCTGAATTGGATAAATTATTTGCAGAAGGTGTTCCATCTAGAAAATTCAAAACTACTTTCCCAAAGACTTTTGATGCTGGTGAATTAATGGAAAAAATGGGTAATGAAGGTGTTAAAGCCGTTGTTAACGACACTGAACATGTTGAACATGTTGATGTTGAATCAAGAGCTTAA > 327 REG_0842 COG0477;_similar_to_AA_sequence_EcoGene_EG20145;_similar_to_AA_sequence_GI_85058715 permease_of_the_major_facilitator_superfamily EFL92241.1 11 MQSVKIDITSIQQLDLAPLTKNQKSLICMVIMGNILEFFDLFLVGFVITLLMQDQQWSLNAIQSGFILAGAGLGTVIGAIAWGWLADKYGRKKSFISCILMLVIFTGLSALTPANGWVFLSIMRICVGIAVGGLNVTSVPYVQEFVPSKKRGLFAGLTSAFIPLGLFLGSLTTLYLAEPLGWRGLLMIGCIPVVLLAWTKFIPESPRYLVSKGRFQNAREAYAWAMNIPVTKVGHLPEYVSTPKPSYLKIIKDYPKQLTIVAIGSFCFIFGSFVIQSWGQVLLNKSFHFSVHMVANLFMILSLGDLVGRLLSAWVSDYLGRRWTLFVCGLIGALGCTIAALSMQITTIMHFFSLNIASSGWIFFVGIFIAMMFGDGAFSIINVFGGEMFPNHIRSTCLGLGYGVGATAKIIGPIFLGAIIGSEKLSEDVVLVPFLIFAFIFFIGSIVYLFARETRNIQLEDI gamma_subgroup Candidatus_Regiella_insecticola_LSR1 Candidatus_Regiella_insecticola_LSR1 GL379590 195299..196687 Degnan,P.H.,_Leonardo,T.E.,_Cass,B.N.,_Hurwitz,B.,_Stern,D.,_Gibbs,R.A.,_Richards,S._and_Moran,N.A. NA 0:1389 NA NA 19-AUG-2010 Candidatus_Regiella_insecticola_LSR1_genomic_scaffold_Scaffold2,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Candidatus_Regiella_insecticola_E0WSA7_9ENTR.gb Regiella 304283688 Environ._Microbiol._(2009)_In_press NA GL379590 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19840097 1389 NA genomic_DNA NA LSR1 NA secondary_symbiont_type-U_of_Uroleucon_solidaginis NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 663321 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_aphid_secondary_symbionts,_Candidatus_Regiella Dynamics_of_genome_evolution_in_facultative_symbionts_of_aphids NA GL379590.1 TCATATATCTTCAAGCTGGATATTACGCGTTTCGCGAGCAAACAGATAAACGATAGAACCGATAAAAAAAATAAACGCGAATATCAGGAAGGGGACTAACACTACATCTTCAGACAGCTTTTCGCTACCGATGATAGCACCTAAAAAAATCGGGCCAATAATTTTAGCGGTGGCACCTACTCCATAACCCAGACCAAGACAGGTCGAGCGGATATGATTAGGGAACATTTCTCCACCAAATACATTGATAATACTAAATGCGCCATCGCCAAACATCATAGCTATAAAGATCCCAACAAAGAAAATCCAGCCCGAAGAGGCAATATTCAGACTGAAAAAATGCATGATTGTCGTGATCTGCATAGAGAGCGCGGCAATCGTACATCCTAGAGCACCAATCAAACCGCAGACAAAGAGTGTCCAACGTCTCCCAAGATAATCGGAGACCCATGCCGACAGTAATCGACCGACTAAGTCTCCTAAAGAAAGTATCATGAATAAATTCGCAACCATATGAACACTAAAGTGGAAGGATTTATTTAGTAATACCTGTCCCCATGACTGAATAACGAAACTCCCGAAGATAAAACAAAATGAACCAATAGCAACAATAGTAAGTTGTTTTGGATAGTCCTTGATAATTTTTAGATAAGACGGTTTGGGAGTGGATACATATTCAGGTAAATGCCCCACTTTAGTTACCGGAATATTCATCGCCCAAGCATAGGCTTCGCGGGCATTCTGAAAACGTCCTTTTGATACTAAATATCGCGGTGATTCTGGGATAAATTTTGTCCAAGCCAGCAAGACAACTGGAATACAACCAATCATCAAAAGGCCGCGCCAGCCAAGCGGTTCAGCGAGATAAAGTGTTGTGAGGGATCCAAGAAATAGCCCTAATGGTATGAACGCTGAAGTAAGACCAGCAAATAGACCTCGCTTTTTAGATGGTACAAATTCTTGCACATAAGGCACAGAAGTAACATTAAGCCCGCCAACCGCGATGCCAACGCAAATGCGCATGATCGACAAAAAGACCCAGCCATTTGCAGGCGTTAAGGCAGACAGTCCAGTAAATATAACAAGCATCAAAATACATGAGATAAATGACTTTTTTCGACCATATTTATCAGCGAGCCAACCCCAAGCAATTGCGCCAATGACGGTTCCAAGTCCCGCTCCTGCGAGGATAAAACCAGACTGTATTGCGTTCAATGACCACTGTTGGTCTTGCATCAGCAAGGTAATGACAAAACCGACCAAAAACAAATCAAAGAATTCGAGAATATTTCCCATAATGACCATGCATATCAAGGATTTTTGATTTTTTGTTAGAGGGGCTAAATCGAGTTGTTGTATAGATGTGATATCTATTTTTACTGATTGCAT > 328 HMPREF0198_1446 COG:_COG0477;_Pfam:_PF07690;_InterPro:_IPR011701 major_facilitator_family_transporter EEV88461.1 11 MDILSRLHALPLFRFHFRLLGLIGLGWLFDAMDTGMVSFVLVTLAGEWQLDAQQSGWIVSVGFIGMALGAVLSGWAADRFGRRNVFAVTMVLYGAATGLCALAPNLPFLLICRFWVGFGLGGQLPVAVSLVSEYAPPRLRGRFIVLLESFWGLGWLAAALVSYYLIPHYGWRSAFFAGAVPLFYAFAVWKRLPESVAYLLAANRLDEAHTLLCRLESQAGLTPAATAIAPSAPARTRNRLIELWQAPFARRTLMLWLIWFGIVFSYYGIFTWLPKLLAEQGFVVVKTFRYVLVMILAQLPGYFAAAVLVEIIGRKATLAGFLGACALCAYCFGHSTSTNGIMLWGSLMSFFNLGAWGVLYTYTPELYPVRCRAFGAGWAGAVGRIGGIIAPLVVAGMSGSSAGFARIFVMFALVLAAVVVVIVVLGEETKGRTLEEISAG gamma_subgroup Cardiobacterium_hominis_ATCC_15826 Cardiobacterium_hominis_ATCC_15826 ACKY01000071 31671..32993 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1323 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_ATCC._The_genomic_DNA_wasprepared_from_a_single_bacterial_isolate._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data_and_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_with_mapping_tools_such_as_Mosaic_andCrossmatch_and_these_data_were_used_for_error_correction_for_thisversion_of_the_draft_assembly._This_draft_assembly_meets_the_HMPdraft_quality_standards_(more_than_90%_of_the_genome_is_included_incontigs,_more_than_90%_of_a_core_set_of_bacterial_genes_are_foundwith_>_30%_identity_and_>_30%_length;_more_than_90%_of_the_bases_inthe_assembly_have_more_than_5_fold_sequence_coverage,_the_contigN50_length_is_greater_than_5kb,_the_scaffold_N50_length_is_greaterthan_20kb,_and_there_is_less_than_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_11xSequencing_Technology:_454;_ABIAnnotation_was_added_to_the_contigs_in_September_2009. NA 14-SEP-2009 Cardiobacterium_hominis_ATCC_15826_contig00081,_whole_genome_shotgun_sequence. NA Dichelobacter_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cardiobacterium_hominis_C8NAB8_9GAMM.gb Cardiobacterium_Slotnick_and_Dougherty_1964 227072045 Submitted_(14-APR-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACKY01000071 NA NA Cardiobacteriales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives NA 1323 NA genomic_DNA NA ATCC_15826 NA Cardiobacterium_hominis_Slotnick_and_Dougherty_1964 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 638300 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Cardiobacteriales,_Cardiobacteriaceae,_Cardiobacterium Direct_Submission NA ACKY01000071.1 CTAGCCTGCGCTAATCTCTTCCAGCGTCCGTCCTTTGGTTTCCTCGCCGAGGACGACAATCACCACGACCACTGCCGCCAGCACAAGGGCAAACATCACAAAAATCCGCGCGAAGCCCGCGCTGCTGCCGCTCATCCCTGCCACCACCAGCGGCGCGATAATGCCGCCGATGCGGCCAACTGCACCGGCCCACCCCGCACCGAAAGCACGGCAACGCACCGGATAGAGTTCCGGCGTGTAGGTATAGAGCACACCCCAGGCACCGAGGTTAAAGAAGGACATCAGACTGCCCCAAAGCATGATGCCGTTTGTACTCGTGCTGTGCCCGAAGCAGTAGGCGCAGAGCGCGCAGGCGCCGAGAAAACCGGCCAGAGTCGCCTTGCGCCCAATGATTTCCACCAGCACGGCAGCGGCGAAGTAGCCGGGCAGTTGCGCGAGAATCATCACCAGCACATAGCGGAAAGTTTTCACCACGACAAAGCCTTGTTCCGCCAGCAGTTTGGGCAGCCAGGTAAAAATACCGTAGTAAGAAAAAACGATGCCGAACCAGATCAGCCACAGCATCAGCGTGCGTCTGGCAAACGGCGCCTGCCACAGCTCAATAAGGCGGTTACGCGTTCTCGCCGGGGCGGACGGGGCGATAGCAGTCGCGGCAGGCGTCAGCCCCGCCTGGCTTTCGAGGCGGCAGAGCAGGGTGTGCGCTTCATCCAGACGGTTCGCCGCCAGCAAATAAGCCACGGATTCAGGCAGGCGTTTCCACACGGCGAAAGCATAGAACAGCGGCACGGCGCCCGCGAAGAAAGCGCTACGCCAGCCGTAGTGCGGGATGAGGTAGTAGGAAACAAGGGCAGCGGCGAGCCAGCCTAATCCCCAGAAACTTTCCAGCAGGACGATGAAGCGGCCACGCAGGCGGGGCGGTGCATATTCGCTCACCAGCGACACCGCGACCGGCAATTGCCCGCCGAGGCCGAAGCCGACCCAGAAGCGGCAGATAAGCAAAAACGGCAGATTGGGCGCCAGCGCGCAAAGACCAGTAGCAGCGCCATAGAGCACCATGGTGACCGCGAAAACATTGCGGCGGCCAAAGCGGTCAGCCGCCCAGCCACTCAATACCGCACCAAGCGCCATGCCGATGAAGCCGACGCTGACAATCCAGCCGGATTGCTGCGCGTCGAGCTGCCATTCGCCTGCCAGAGTAACAAGGACAAAGGACACCATGCCGGTATCCATCGCATCGAACAGCCAGCCCAGACCAATGAGACCGAGCAGGCGGAAATGGAAGCGGAATAGCGGCAAGGCATGCAATCTGCTGAGAATATCCAT > 329 CHGG_10854 NA hypothetical_protein XP_001226121.1 NA MTLLELKEDRPTPKAVYNWRVYACAAVASFASCMIGYDSAFIGTTLALPSFTEEFDFASYDKDALALLQSNIVSVYQAGAFFGSLFAYVTSHFLGRRKSLFVFSSVFLVGAGIMLAANAERGLGPILAGRVLAGVGVGGASNMVPIYISELAPPAVRGRLVGIYELGWQIGGLVGFWINYGVNTTLAPTRSQWLIPFAVQLIPGGLLFLGLFWIKESPRWLFANGRREEAMKILCWIRNLEPTDHGSREKSARASGSHSSRSSSGKVQWRFFLGGMLFLLQNASGINSINYYSPTVFRSIGITGTNTGFLTTGLFGVVKTVLTIIWLLWLVDHVGRRGMLFVGAAGGSLCMWFIGAYIKIADPSSNQDGGGSMSGGGIAAVFFFYLWTAFYTPSWNGTPWVVNSEMFDQNTRSLGQASASANNWFWNFIISRFTPQMFLKMEYGVYFFFASLMLLSIIFVYYLIPETKSIPLESMDRLFEIKPVCKANKQLMEELGAHSAEDASLSADEKAKQRHLERTESV Sordariomycetes Chaetomium_globosum_CBS_148.51 Chaetomium_globosum_CBS_148.51 XM_001226120 NA Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Kodira,C.,_Yandava,C.,_Zeng,Q.,_Alvarado,L.,_Oleary,S._and_Untereiner,W. NA 0:1569 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165983).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Chaetomium_globosum_CBS_148.51_hypothetical_protein_(CHGG_10854)_partial_mRNA. NA Chaetomiaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Chaetomium_globosum_Q2GMF0_CHAGB.gb Chaetomium 116200617 Unpublished fungi XM_001226120 NA NA pyrenonmycetes sac_fungi NA 1569 NA mRNA NA CBS_148.51 NA Chaetomium_rectum_Sergeeva_1961 NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 306901 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Chaetomiaceae,_Chaetomium Annotation_of_the_Chaetomium_globosum_CBS_148.51_Genome NA XM_001226120.1 ATGACGCTCCTCGAGCTCAAAGAAGACAGGCCGACGCCAAAGGCCGTCTACAACTGGCGAGTCTATGCCTGCGCCGCTGTCGCTTCCTTCGCGTCATGCATGATCGGCTACGACTCGGCCTTCATCGGCACCACCCTCGCCCTTCCCTCCTTCACCGAGGAGTTTGACTTTGCCTCGTACGACAAGGACGCCCTCGCCCTGCTCCAGTCCAACATCGTCTCGGTCTACCAAGCAGGGGCCTTCTTCGGCAGCCTCTTCGCCTATGTCACTAGCCACTTCCTCGGCCGGCGCAAGTCGCTGTTCGTCTTTTCCAGCGTCTTCCTCGTCGGCGCCGGCATCATGCTTGCGGCAAACGCCGAGAGGGGGCTGGGCCCGATCCTCGCCGGCCGCGTCCTGGCTGGTGTCGGCGTCGGCGGTGCCTCCAACATGGTGCCCATCTACATCTCGGAGCTGGCACCCCCGGCCGTCCGTGGCCGTCTAGTCGGCATCTACGAGCTCGGCTGGCAGATTGGCGGCCTGGTAGGCTTCTGGATCAACTACGGCGTCAACACGACGCTCGCGCCCACCCGGTCCCAATGGCTCATCCCCTTCGCTGTTCAGCTCATCCCTGGCGGGCTGTTGTTCCTCGGCCTGTTCTGGATCAAAGAGTCGCCGAGGTGGCTCTTTGCCAACGGCAGGAGGGAGGAGGCCATGAAAATCCTCTGCTGGATACGCAACCTCGAACCCACCGACCACGGTTCGAGAGAGAAGTCGGCAAGGGCTTCTGGAAGCCATTCCTCGCGCTCAAGCAGCGGAAAGGTTCAGTGGCGCTTCTTCCTTGGCGGCATGCTCTTTCTCCTCCAGAACGCCAGTGGTATCAACTCGATCAACTACTACAGCCCGACCGTGTTCCGGAGCATCGGGATCACGGGCACCAACACCGGGTTCTTGACGACGGGCCTCTTCGGCGTCGTCAAGACCGTCCTCACAATCATCTGGCTGCTCTGGCTCGTGGACCACGTGGGGCGGCGCGGTATGCTCTTCGTCGGCGCGGCGGGCGGCTCCCTGTGCATGTGGTTCATCGGCGCCTACATCAAGATCGCGGACCCCTCTTCAAACCAAGACGGCGGCGGCAGCATGTCCGGCGGGGGCATCGCGGCCGTCTTCTTCTTCTACCTCTGGACGGCCTTCTACACGCCGTCGTGGAACGGCACGCCGTGGGTGGTCAACTCGGAGATGTTTGACCAGAACACGCGCTCGCTGGGCCAGGCGTCGGCCTCGGCCAATAACTGGTTCTGGAACTTTATCATCTCGCGCTTCACCCCGCAGATGTTCCTCAAGATGGAGTACGGCGTCTACTTCTTCTTTGCGTCGCTGATGCTCTTGTCTATCATCTTTGTCTATTACCTGATTCCCGAGACCAAGTCGATCCCGTTGGAGTCCATGGACCGTCTGTTTGAGATCAAGCCCGTGTGCAAGGCCAACAAGCAGCTCATGGAGGAGCTTGGTGCCCATAGCGCTGAGGACGCTTCGTTGTCGGCGGATGAGAAGGCGAAGCAGCGCCATTTGGAGAGGACGGAGAGCGTCTAG > 330 CHGG_10203 NA hypothetical_protein XP_001228130.1 NA MLGFPIPTLTSLVVAVTNFAFTLVALLLIDRIGRRRILLWSIPFMVVGLILAAHGFSFITLAAVDSTGDKPTAAPAQGAAITILVSIMVYVAGYALGLGNVPWMQSELFALNVRSLGSGIATATNWGANFVIGLTFLLLMDALTPSWTFVLYAGICAVGYGLIWNFYPETAGLSLEEAASLLEDDRWGVR Sordariomycetes Chaetomium_globosum_CBS_148.51 Chaetomium_globosum_CBS_148.51 XM_001228129 NA Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Kodira,C.,_Yandava,C.,_Zeng,Q.,_Alvarado,L.,_Oleary,S._and_Untereiner,W. NA 0:573 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165982).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Chaetomium_globosum_CBS_148.51_hypothetical_protein_(CHGG_10203)_partial_mRNA. NA Chaetomiaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Chaetomium_globosum_Q2GPA1_CHAGB.gb Chaetomium 116204638 Unpublished fungi XM_001228129 NA NA pyrenonmycetes sac_fungi NA 573 NA mRNA NA CBS_148.51 NA Chaetomium_rectum_Sergeeva_1961 NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 306901 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Chaetomiaceae,_Chaetomium Annotation_of_the_Chaetomium_globosum_CBS_148.51_Genome NA XM_001228129.1 ATGCTCGGATTCCCGATCCCGACACTCACCTCGTTGGTCGTGGCGGTCACCAACTTCGCTTTCACCCTTGTGGCCCTCTTGTTGATCGACCGTATCGGGAGGAGGCGCATTCTGCTCTGGTCGATTCCGTTCATGGTGGTGGGCCTCATCCTCGCAGCACACGGCTTCTCGTTTATCACGCTCGCTGCCGTCGATTCGACCGGTGACAAACCTACCGCCGCCCCTGCTCAGGGGGCGGCAATTACCATTCTCGTGAGCATCATGGTCTACGTCGCTGGTTACGCCTTGGGATTGGGGAATGTGCCCTGGATGCAGAGCGAGCTGTTCGCGCTCAACGTGCGGTCGCTTGGGAGCGGCATTGCCACGGCAACCAACTGGGGAGCCAATTTTGTCATAGGGCTGACCTTCCTACTGCTCATGGATGCGCTCACGCCGTCCTGGACATTCGTGCTCTATGCGGGAATATGCGCCGTTGGGTATGGGTTGATCTGGAACTTCTACCCGGAAACGGCAGGGCTGAGCTTGGAAGAAGCGGCGAGTCTTCTGGAAGATGACCGATGGGGTGTGCGTTGA > 331 CHGG_06919 NA hypothetical_protein XP_001224575.1 NA MKKFLGLRGRALNLAVATIAGCDFLLFGYDQGVMGGILTLKVFLDAFPMINPEAAGLTTAESSTRATYQGIAVASYNLGCFIGAVITIFIGNPLGRKRVIMLGTSVMIVGAILQASSTTLEQFIVGRIITGLGNGGNTSTVPTWQSESSKAHKRGKVFFCLIILIFIPFLPESPRWLILKGREAEAKEVIAALEDKETTDRVVENEFLAIKETVLEMSKGTFGDLFTMDKNRNLHRTLLAYFNQVFQQISGINLITYYAAVIYKGLGMTDFMSRLLAALNGTEYFIASWPAVFLVERVGRRKLMLFGAAGQAATMAILAGVNSRNDFGYQIAGIVFLFVFNTFFAVGWLGMTWLYPAEIVPLRIRAPANALSTSANWIFNFLVVMITPIAFNNIGYQTYIIFAVINAFMVPATYFFYPETAYRSLEEMDNIFHKVEDGWKGVFTVVKTAKAEPRWYGKNGELLVDYQQTEEHRRHVKEAGGVVAPEKTSGEGDGSGSGSGSGGGVTHDEFRA Sordariomycetes Chaetomium_globosum_CBS_148.51 Chaetomium_globosum_CBS_148.51 XM_001224574 NA Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Kodira,C.,_Yandava,C.,_Zeng,Q.,_Alvarado,L.,_Oleary,S._and_Untereiner,W. NA 0:1539 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_165980).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Chaetomium_globosum_CBS_148.51_hypothetical_protein_(CHGG_06919)_partial_mRNA. NA Chaetomiaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Chaetomium_globosum_Q2GYN5_CHAGB.gb Chaetomium 116197526 Unpublished fungi XM_001224574 NA NA pyrenonmycetes sac_fungi NA 1539 NA mRNA NA CBS_148.51 NA Chaetomium_rectum_Sergeeva_1961 NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 306901 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Chaetomiaceae,_Chaetomium Annotation_of_the_Chaetomium_globosum_CBS_148.51_Genome NA XM_001224574.1 ATGAAGAAGTTTCTTGGGCTCCGGGGCCGGGCCCTCAACCTGGCCGTGGCCACAATCGCTGGATGTGACTTTCTTTTATTCGGCTATGACCAAGGCGTTATGGGTGGCATCCTCACCCTCAAGGTCTTTCTTGACGCCTTCCCGATGATCAACCCCGAAGCGGCCGGGCTCACAACAGCGGAATCATCAACTCGGGCAACCTACCAAGGTATTGCCGTCGCTTCATACAATCTCGGATGTTTCATCGGTGCCGTCATCACTATCTTTATCGGAAACCCTCTCGGCAGAAAGCGAGTGATCATGCTGGGTACTTCCGTCATGATAGTGGGAGCGATTTTACAGGCCAGCTCGACCACGTTGGAACAGTTCATCGTCGGGAGGATTATTACAGGATTGGGCAATGGAGGGAATACCAGTACGGTTCCAACATGGCAGTCTGAATCATCCAAAGCACACAAACGCGGGAAGGTTTTCTTCTGCCTGATCATCCTCATCTTCATCCCCTTCCTCCCCGAGTCGCCGCGCTGGCTCATCCTCAAGGGCCGCGAGGCCGAAGCCAAGGAGGTGATCGCCGCGCTCGAGGACAAGGAGACAACGGACAGAGTCGTCGAGAACGAATTCCTCGCCATCAAGGAGACCGTGCTGGAGATGTCCAAGGGAACCTTCGGGGACCTCTTCACCATGGACAAGAACCGCAATCTACACCGTACCCTGCTGGCCTACTTCAACCAGGTCTTCCAGCAGATCTCGGGCATCAACCTGATCACATACTACGCGGCTGTAATCTACAAGGGCCTTGGAATGACAGACTTTATGTCACGCCTGTTGGCCGCCCTCAACGGCACCGAATACTTCATCGCGTCGTGGCCGGCCGTCTTCCTAGTCGAGCGGGTCGGCCGGCGCAAGCTGATGCTGTTCGGCGCGGCCGGGCAGGCGGCGACCATGGCCATCTTGGCGGGGGTCAACTCGCGGAACGATTTCGGCTACCAGATTGCGGGCATCGTGTTCCTCTTCGTCTTCAACACCTTCTTCGCCGTGGGGTGGCTGGGCATGACGTGGCTGTACCCGGCCGAGATCGTGCCGCTGCGCATCCGCGCCCCCGCCAACGCCCTCTCCACCAGCGCCAACTGGATCTTCAACTTCCTCGTCGTCATGATCACCCCGATCGCCTTCAACAATATCGGCTATCAGACCTACATCATCTTTGCCGTCATCAACGCCTTCATGGTGCCGGCGACCTACTTCTTCTACCCGGAGACGGCCTACCGCTCGCTCGAGGAGATGGACAACATCTTCCACAAGGTGGAGGACGGATGGAAGGGCGTGTTTACTGTGGTGAAAACGGCCAAGGCGGAGCCGCGGTGGTATGGCAAGAATGGGGAGCTGTTGGTCGATTATCAGCAGACCGAGGAGCACCGGAGGCATGTCAAGGAAGCGGGCGGTGTGGTTGCGCCCGAGAAGACGTCAGGTGAGGGTGATGGGTCTGGGTCTGGGAGTGGAAGCGGCGGTGGTGTCACGCACGACGAGTTCCGGGCGTAG > 332 Cag_1339 NA sugar_transport_protein YP_379642.1 11 MARNVVNAEQTEEVSSTRRVIAASSVGTLIEWYDFYIFGSLAKIISEQFFPKDNPTAALLATLATFAAGFVVRPFGALFFGRLGDLIGRKYTFLVTLVIMGGSTFAIGLVPGYATIGFAAPAIVFVLRLLQGLALGGEYGGAATYVAEHSPNGKRGFWTSFIQTTATFGLFLSLGVILIVRQTLGVETFQDWGWRVPFILSAFLVGVSIYIRMKMSESPMFAKMKKEGKTSANPLAESFKQKDNLKMVLLALLGATAGQGVVWYTGQFYALSFLQNACNIEFEQSNLIILIALVIGTPFFVIFGALSDKIGRKYIMMAGMFIAVLAYRPIYTMMYNDANLKNKIEIVDQTTVETKEEVKGTDNVITTVTKKTFEDGTTYKEIKKETIPLDAAKKAELAAADKLKPETKKEVVLPQHLYYKMIGLVLIQVIFVTMVYGPIAAFLVEIFPTRIRYTSMSLPYHIGNGVFGGLVPLISTRLVEATRPAAGLPPADPLAGLWYPIIIAGVSFVIGMLYISNNTNNMDVE Chlorobia Chlorobium_chlorochromatii_CaD3 Chlorobium_chlorochromatii_CaD3 NC_007514 1806943..1808520 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Bryant,D.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Kyrpides,N.,_Ivanova,N._and_Richardson,P. NA 0:1578 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000108.URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Don_Bryant_(dab14@psu.edu)Contacts:_Paul_Richardson_(microbes@cuba.jgi-psf.org)Finished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.COMPLETENESS:_full_length. NA 24-JAN-2012 Chlorobium_chlorochromatii_CaD3_chromosome,_complete_genome. NA Chlorobiaceae_Copeland_1956 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Chlorobium_chlorochromatii_Q3AQX6_CHLCH.gb Chlorobium_Nadson_1906_(Approved_Lists_1980)_emend._Imhoff_2003 78187984 Unpublished NA NC_007514 NA NA Chlorobiales_Gibbons_and_Murray_1978 green_sulfur_bacteria NA 1578 NA genomic_DNA NA CaD3 NA epibiont_of_the_phototrophic_consortium_"Chlorochromatium_aggregatum" NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 340177 Bacteria,_Chlorobi,_Chlorobia,_Chlorobiales,_Chlorobiaceae,_Chlorobium/Pelodictyon_group,_Chlorobium Complete_sequence_of_Chlorobium_chlorochromatii_CaD3 NA NC_007514.1 ATGGCACGTAATGTTGTAAATGCTGAGCAAACGGAAGAGGTTAGCAGCACTCGGCGGGTTATTGCTGCATCCTCCGTTGGCACGCTCATTGAGTGGTACGACTTCTACATTTTTGGAAGTCTTGCCAAAATTATTTCCGAACAATTTTTCCCAAAAGACAATCCAACAGCAGCCTTGCTGGCAACGCTTGCTACTTTTGCGGCTGGCTTTGTGGTACGCCCCTTTGGTGCCCTCTTTTTTGGTCGCTTGGGCGATCTTATCGGAAGAAAGTACACCTTTCTTGTTACGCTGGTTATTATGGGTGGCTCAACCTTTGCAATTGGTTTAGTACCTGGTTACGCAACTATTGGTTTTGCTGCGCCTGCAATTGTGTTTGTGCTGCGCTTACTGCAAGGTTTAGCGCTGGGCGGTGAGTATGGCGGTGCGGCAACCTATGTGGCGGAGCACTCTCCAAACGGTAAACGTGGTTTTTGGACAAGCTTTATTCAAACCACAGCAACCTTTGGTCTCTTTCTGTCGCTTGGCGTTATTTTAATTGTTCGCCAAACGCTTGGTGTTGAAACCTTTCAAGATTGGGGCTGGCGCGTACCATTTATTCTTTCTGCATTTTTAGTTGGCGTTTCAATTTACATCCGCATGAAAATGTCGGAATCGCCAATGTTTGCTAAAATGAAGAAAGAGGGCAAAACCTCAGCTAATCCACTTGCCGAAAGCTTTAAGCAAAAGGATAACCTGAAAATGGTGCTGCTTGCTTTGCTTGGTGCTACGGCTGGTCAAGGTGTGGTTTGGTACACAGGTCAATTCTATGCTCTTTCATTTTTGCAAAACGCTTGCAACATTGAGTTTGAGCAAAGCAACTTGATTATTCTTATTGCACTTGTTATTGGCACCCCATTCTTTGTGATTTTTGGTGCGCTCTCCGACAAAATTGGTCGTAAGTACATTATGATGGCTGGTATGTTTATTGCCGTGCTTGCTTATCGTCCTATTTACACCATGATGTACAACGATGCCAATCTCAAAAATAAAATTGAGATTGTTGACCAAACCACCGTTGAAACCAAAGAAGAGGTAAAAGGCACCGACAACGTTATTACCACCGTAACGAAAAAAACTTTTGAGGATGGTACCACTTACAAAGAAATCAAAAAAGAGACCATCCCGCTTGATGCTGCAAAAAAAGCTGAACTTGCTGCTGCCGACAAGCTAAAGCCTGAAACCAAAAAAGAGGTAGTTCTGCCACAGCACTTGTACTACAAAATGATTGGTTTAGTGCTAATTCAGGTGATTTTTGTTACCATGGTGTATGGTCCAATTGCAGCATTCCTTGTTGAAATTTTCCCAACACGCATTCGCTACACCTCCATGTCGCTCCCTTACCACATTGGTAACGGTGTATTTGGTGGTTTAGTACCGCTGATTTCAACCCGTCTTGTAGAAGCAACCCGTCCTGCTGCTGGCTTACCTCCAGCCGATCCGCTTGCTGGCTTGTGGTATCCAATTATTATTGCTGGCGTAAGCTTTGTTATTGGTATGCTTTACATTTCAAACAACACCAACAACATGGACGTTGAGTAA > 333 Cpha266_0712 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_cch:Cag_1339_putative_sugar_transport_protein major_facilitator_transporter YP_911191.1 11 MAKNVSNVSQNEEVTSIRRVITASSVGTLIEWYDFYIFGSLAKIISEQFFPKDNPTAALLATLATFAAGFVVRPFGALFFGRLGDLIGRKYTFLVTLIIMGGSTFAIGLVPGYKTIGFVAPAIVFVLRLLQGLALGGEYGGAATYVAEHSPSDKRGFWTSFIQTTATIGLFVSLGVILIVRQTLGVETFTDWGWRIPFLLSIFLVAISVYIRMKMSESPAFAKLKKEGKTSTNPLAESFKKKDNLKMVLLALLGATAGQGVVWYTGQFYALSFLQNACNVEFVQSNYIISIALLIGTPFFIIFGALSDKIGRKYIMMTGMLIAVVAYRPIYTVMYEEANLKAKTEIKEKTTTEVALALKGADSVKTTITKKTFEDGTTYKETKKETTPVDLEKKAELAAAGKLKPETKKETTLSESSYYKMIGLVLIQVLFVTMVYGPIAAFLVELFPTRIRYTSMSLPYHIGNGVFGGLVPLISTRLVEATRPGPDLPPADPLAGLWYPIIIGAVCFLIGSIYISGKTNNLDID Chlorobia Chlorobium_phaeobacteroides_DSM_266 Chlorobium_phaeobacteroides_DSM_266 NC_008639 811985..813562 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Goltsman,E.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Mikhailova,N.,_Li,T.,_Overmann,J.,_Bryant,D.A._and_Richardson,P. NA 0:1578 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000492.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3634474Source_DNA_and_bacteria_available_from_Donald_A._Bryant(dab14@psu.edu)Bacteria_available_from_DSMZ:_DSM_266Contacts:_Donald_A._Bryant_(dab14@psu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-PGFFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 22-JAN-2012 Chlorobium_phaeobacteroides_DSM_266_chromosome,_complete_genome. NA Chlorobiaceae_Copeland_1956 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Chlorobium_phaeobacteroides_A1BEE0_CHLPD.gb Chlorobium_Nadson_1906_(Approved_Lists_1980)_emend._Imhoff_2003 119355857 Unpublished NA NC_008639 NA NA Chlorobiales_Gibbons_and_Murray_1978 green_sulfur_bacteria NA 1578 NA genomic_DNA NA DSM_266 NA Chlorobium_phaeobacteroides_Pfennig_1968_(Approved_Lists_1980)_emend._Imhoff_2003 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 290317 Bacteria,_Chlorobi,_Chlorobia,_Chlorobiales,_Chlorobiaceae,_Chlorobium/Pelodictyon_group,_Chlorobium Complete_sequence_of_Chlorobium_phaeobacteroides_DSM_266 NA NC_008639.1 TTAGTCGATGTCCAGGTTATTGGTTTTGCCCGAAATATAGATCGAGCCGATAAGGAAGCATACCGCGCCAATAATGATAGGATACCATAGACCGGCAAGCGGGTCGGCAGGCGGCAGATCAGGACCGGGACGGGTCGCTTCGACAAGTCGGGTTGAAATAAGCGGAACAAGACCGCCGAACACGCCGTTACCAATGTGATAAGGTAGCGACATGGAGGTGTAACGTATCCTGGTCGGGAACAACTCGACAAGGAACGCGGCAATCGGGCCGTAAACCATGGTGACGAAAAGAACCTGAATAAGCACAAGTCCGATCATTTTATAGTATGAACTCTCTGAAAGGGTTGTTTCCTTCTTGGTTTCAGGTTTCAGCTTGCCGGCAGCGGCCAGCTCGGCTTTCTTTTCGAGATCAACAGGGGTTGTTTCCTTTTTGGTCTCCTTGTAGGTTGTTCCGTCTTCGAAGGTTTTCTTTGTTATGGTTGTTTTTACGGAATCAGCCCCTTTCAGTGCCAGCGCCACCTCTGTTGTTGTCTTCTCCTTGATTTCGGTTTTGGCCTTGAGATTGGCTTCTTCGTACATGACGGTATAGATAGGTCTGTACGCTACCACGGCAATCAGCATGCCGGTCATCATGATGTACTTGCGCCCGATCTTGTCGGAAAGTGCTCCGAAAATGATAAAGAACGGTGTTCCGATGAGCAGCGCTATGGAGATGATGTAGTTGCTCTGCACAAACTCCACATTACAGGCGTTCTGAAGAAAAGAGAGCGCATAGAACTGTCCGGTGTACCAGACCACACCCTGACCAGCCGTCGCGCCAAGCAGTGCAAGCAGAACCATTTTCAGGTTGTCTTTTTTCTTGAAGCTCTCGGCAAGAGGGTTGGTTGAGGTTTTTCCCTCTTTTTTCAGTTTTGCAAATGCAGGGGATTCCGACATTTTCATGCGGATGTACACTGAAATGGCAACAAGAAAAATCGAGAGAAGGAACGGAATTCTCCAGCCCCAGTCGGTAAAGGTTTCGACACCAAGCGTTTGGCGGACAATGAGAATAACGCCAAGAGAGACAAACAGACCGATGGTGGCAGTTGTCTGAATGAAGCTTGTCCAGAAGCCACGTTTATCAGACGGAGAGTGTTCAGCAACATAGGTTGCCGCACCGCCGTATTCGCCTCCGAGGGCAAGACCCTGGAGCAGTCTCAAAACAAAGACGATTGCCGGAGCTACAAACCCGATCGTTTTGTAACCGGGAACCAGGCCTATGGCAAAGGTTGATCCACCCATGATGATGAGTGTTACCAGAAAGGTGTATTTTCTTCCGATCAGGTCACCGAGGCGACCGAAAAACAGCGCGCCGAAAGGTCGCACCACAAAACCTGCCGCAAAGGTAGCGAGGGTGGCAAGCAGCGCGGCTGTCGGGTTGTCCTTTGGAAAGAATTGCTCGGAAATAATCTTTGCAAGACTTCCGAAAATGTAAAAGTCATACCATTCGATGAGCGTACCAACGGAGGATGCGGTAATAACCCTCCTGATGCTGGTTACCTCTTCGTTTTGGGAGACGTTTGAGACATTTTTTGCCAT > 334 Chy400_3302 PFAM:_major_facilitator_superfamily_MFS_1;_KEGG:_cau:Caur_3056_major_facilitator_superfamily_MFS_1 major_facilitator_superfamily_protein YP_002571006.1 11 MTTIPFRQAGFVVTVLAVSVLLAKGTWFSASAVIPALTAEWALNDTVRAWLTMSVQLGFACGAFISAVLGLADRWPTHWFFAGSALLAALCTALIAWWANGPLLALPLRFLTGMALAGVYPVGMKIMATWTQRGRGLAIGVLVGALTVGSASPHLLNVMGGIDDWRRTLLMAAGLAVVGGLIVALMVREGPLRTAAPRFSWSQVVDVARERPVLLANLGYLGHMWELYAAWAWLPLFLLASFEERGIAASWAGLVAFAAIAMGGLGSVLAGLLADRIGRTTITIAAMAVSGSCALAIGFTFGGEPWVVAVLAMVWGLTIVADSAQFSAAVSELSPPGRTGTALTLQTSLGFLLTLITIWLIPPLVNLVGWRWAFAGLAVGPAIGIWAMATLRRSPAAARLAGGRG not_Chlorobacteria_Cavalier-Smith_2002 Chloroflexus_sp._Y-400-fl Chloroflexus_sp._Y-400-fl NC_012032 4114326..4115543 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Sims,D.,_Kiss,H.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ovchinnikova,G.,_Bryant,D._and_Richardson,P. NA 0:1218 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001364.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4082854Source_DNA_and_bacteria_available_from_Donald_Bryant(dab14@psu.edu)Contacts:_Donald_Bryant_(dab14@psu.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 27-JAN-2012 Chloroflexus_sp._Y-400-fl_chromosome,_complete_genome. NA photosynthetic_flexibacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Chloroflexus_aurantiacus_B9LBN5_CHLSY.gb Chloroflexus_Pierson_and_Castenholz_1974 222523302 Unpublished NA NC_012032 NA NA Chloroflexus_group green_nonsulfur_bacteria NA 1218 NA genomic_DNA NA Y-400-fl NA Chloroflexus_sp._Y-400-fl NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 480224 Bacteria,_Chloroflexi,_Chloroflexales,_Chloroflexaceae,_Chloroflexus Complete_sequence_of_Chloroflexus_sp._Y-400-fl NA NC_012032.1 ATGACAACCATTCCATTTCGTCAAGCAGGGTTTGTGGTAACGGTGCTGGCAGTGTCAGTGCTGCTGGCGAAAGGGACGTGGTTTTCCGCTTCAGCCGTCATTCCGGCATTGACTGCCGAATGGGCCTTGAACGACACAGTTCGGGCATGGCTCACGATGTCGGTGCAGTTGGGTTTTGCCTGTGGCGCGTTTATCTCGGCAGTGCTGGGATTGGCGGATCGCTGGCCGACCCACTGGTTTTTTGCCGGTTCAGCCTTGCTGGCGGCGTTGTGTACGGCGTTGATTGCGTGGTGGGCCAATGGCCCTCTACTGGCGTTACCACTGCGTTTTTTGACGGGCATGGCACTGGCTGGAGTGTATCCGGTTGGGATGAAAATCATGGCGACATGGACGCAACGGGGGCGTGGGCTGGCAATCGGGGTGTTGGTCGGAGCACTGACTGTCGGTTCGGCCTCGCCGCATCTGCTGAATGTTATGGGTGGGATTGATGACTGGCGGCGGACGTTGTTGATGGCTGCCGGTCTGGCAGTTGTGGGTGGGCTGATCGTTGCGCTTATGGTACGCGAAGGGCCACTACGCACAGCGGCACCGCGTTTCAGTTGGTCGCAGGTGGTGGACGTGGCACGTGAACGACCGGTGTTGCTGGCGAATCTGGGGTATCTGGGCCATATGTGGGAGCTGTACGCGGCGTGGGCATGGTTGCCGCTTTTCCTGCTGGCCAGCTTCGAGGAGCGCGGTATCGCGGCGTCGTGGGCGGGCCTGGTGGCTTTTGCCGCGATTGCAATGGGTGGGCTGGGGAGTGTGCTGGCCGGGCTGCTTGCCGACCGGATCGGGCGAACGACCATCACGATAGCAGCAATGGCGGTGAGTGGCAGTTGCGCACTCGCGATAGGCTTTACCTTTGGCGGAGAACCATGGGTGGTTGCTGTACTGGCGATGGTATGGGGATTAACGATTGTTGCCGACTCGGCCCAATTCTCGGCAGCGGTAAGCGAACTCTCACCGCCGGGCCGTACCGGTACGGCGCTGACGTTGCAGACCAGTCTGGGGTTTCTGCTCACCCTGATCACCATCTGGCTCATCCCACCACTGGTCAATCTGGTTGGCTGGCGGTGGGCCTTTGCCGGGCTGGCAGTTGGCCCGGCAATCGGGATTTGGGCGATGGCGACGCTGCGGCGTTCGCCGGCAGCGGCACGGCTGGCGGGTGGACGTGGATAA > 335 HMPREF0204_14396 COG:_COG0477;_Pfam:_PF07690;_InterPro:_IPR011701 major_facilitator_transporter EFK35327.1 11 MSENHHESYENMTDRQKNRTIWSVITASSLGTLIEWYDFYIFGSLAIVLATKFFPAVNPTAAFLSTLATFAAGFVVRPFGALFFGRLGDLIGRKYTFLVTLLIMGFSTFLIGCIPSYETIGFLAPVLVLILRLLQGLALGGEYGGAATYVAEYAQPHRRGYWTSWIQTTATAGLFISLIVILITKTTLSAEEFDTWGWRVPFWISILMVAVSYIIRKNMKESPLFAKAKSEGKTSKNPLKESFGNKYNFKFVLLALFGAAMGQGVIWYTGQFYAMSFLQKVMNVESAQVDSLMATALFLGTPFFVFFGWLSDKIGRKAVMMTGMLVAILAYRPIYDSMFKSVSLENKTVASNGITEKRTAKIHNDIATDSLVTFHKETLYTDGTLIKKDSIVHWSPSGVVMKDGKAEEPKVSQSLQLSDNTKWYLVFLVFIQVIFVTMVYGPIAAFLVEMFPVRIRYTSMSLPYHIGNGVFGGLLPAVATYLVTTGKEAGHATWYLEGLWYPIGVATVCLIIGLFYLKNKNNNLHD not_Flavobacteria_Cavalier-Smith_2002 Chryseobacterium_gleum_ATCC_35910 Chryseobacterium_gleum_ATCC_35910 ACKQ02000007 2535503..2537083 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1581 Chryseobacterium_gleum_ATCC_35910_Strain_source,_body_site:_urogenital_tract_This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC._SourceDNA_provided_by_American_Type_Culture_Collection_(ATCC35910).Funded_by_Genomes_and_Genetics_at_BCM-HGSC_(U54_HG003273).##Genome-Assembly-Data-START##Finishing_Goal_::_Improved_High-Quality_DraftCurrent_Finishing_Status_::_Improved_High-Quality_DraftAssembly_Method_::_Newbler_Assembler_v._2.3.10192009Genome_Coverage_::_31.57xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 13-JUL-2010 Chryseobacterium_gleum_ATCC_35910_Contig314,_whole_genome_shotgun_sequence. NA Myroidaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Chryseobacterium_gleum_D7W5S4_9FLAO.gb Kaistella_Kim_et_al._2004 300501745 Submitted_(06-APR-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACKQ02000007 NA NA Flavobacteriales Cytophaga-Flexibacter-Bacteroides_phylum NA 1581 NA genomic_DNA NA ATCC_35910 NA Flavobacterium_gleum_Holmes_et_al._1984 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 525257 Bacteria,_Bacteroidetes,_Flavobacteriia,_Flavobacteriales,_Flavobacteriaceae,_Chryseobacterium Direct_Submission NA ACKQ02000007.1 ATGAGCGAAAATCATCACGAAAGCTACGAAAATATGACCGACAGGCAGAAAAACCGCACCATCTGGAGCGTTATCACAGCCTCCTCCCTCGGTACACTGATAGAATGGTATGACTTTTACATCTTCGGAAGTCTTGCCATTGTCTTAGCGACCAAATTTTTCCCTGCAGTCAATCCTACAGCCGCATTCTTATCTACTCTTGCAACTTTTGCTGCCGGATTTGTAGTAAGACCTTTCGGGGCTTTATTTTTCGGGAGACTGGGAGATCTTATCGGAAGAAAATATACTTTCCTTGTGACACTGCTGATCATGGGTTTTTCCACTTTCCTGATAGGGTGTATTCCAAGTTATGAAACCATTGGGTTTCTGGCACCGGTCTTAGTTTTAATTTTAAGATTGCTTCAGGGGCTAGCTCTTGGAGGTGAATATGGAGGTGCTGCTACCTATGTTGCAGAATACGCTCAACCTCATCGAAGAGGTTACTGGACGTCATGGATCCAGACTACTGCAACAGCAGGACTTTTTATTTCATTAATTGTTATTCTGATCACCAAAACCACTCTTTCCGCAGAAGAATTTGACACCTGGGGATGGAGAGTTCCTTTCTGGATTTCCATTCTGATGGTAGCCGTATCTTACATCATCAGAAAGAATATGAAAGAGTCTCCGCTTTTTGCGAAAGCTAAAAGCGAGGGAAAAACGTCTAAAAATCCTTTAAAGGAAAGTTTCGGAAACAAATACAACTTCAAGTTTGTATTATTGGCTTTATTCGGAGCTGCGATGGGACAAGGTGTCATCTGGTATACAGGACAGTTCTATGCCATGAGTTTCCTTCAAAAGGTCATGAATGTAGAATCTGCTCAGGTAGATTCATTAATGGCTACCGCTTTATTCTTAGGAACACCTTTCTTTGTCTTTTTCGGATGGCTGTCTGATAAAATCGGAAGAAAAGCAGTGATGATGACTGGCATGCTGGTTGCCATTTTAGCGTACAGGCCTATTTATGACAGTATGTTCAAAAGTGTGAGCCTTGAGAATAAAACGGTTGCTTCCAATGGAATTACTGAAAAAAGAACAGCAAAAATCCATAACGATATTGCAACAGACAGCCTGGTTACTTTCCACAAGGAAACCCTTTATACAGACGGAACCCTGATTAAAAAAGACAGTATCGTTCACTGGTCGCCTTCAGGAGTTGTTATGAAAGACGGAAAAGCCGAAGAGCCTAAAGTTTCCCAAAGCTTACAATTAAGTGACAACACCAAATGGTACCTCGTCTTCCTTGTATTCATCCAGGTAATATTTGTAACCATGGTATACGGACCTATCGCAGCTTTCCTTGTTGAAATGTTCCCTGTGAGAATCCGATACACCTCAATGTCGCTACCTTACCATATCGGAAATGGAGTTTTCGGAGGCCTTCTTCCGGCAGTGGCAACTTATCTTGTAACCACCGGAAAAGAAGCAGGGCATGCAACATGGTATCTTGAAGGATTATGGTATCCTATCGGAGTGGCTACGGTATGTCTCATCATCGGATTGTTTTATCTTAAAAATAAGAACAATAATCTTCACGATTAA > 336 CKO_03754 KEGG:_cal:orf19.2425_1.4e-05_highly_conserved_hypothetical_protein_K01804;_COG:_COG0477_Permeases_of_the_major_facilitator_superfamily;_Psort_location:_plasma_membrane,_score:_23 proline/glycine_betaine_transporter YP_001455266.1 11 MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYASIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTVVGEENFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQEGPKVSFKEIATKHWRSLLACIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVIMGSIALFALAIPAFILINSNIIGLIFAGLLMLAVILNCFTGVMASSLPAMFPTHIRYSALAAAFNISVLIAGLTPTLAAWLVESSQNLMMPAYYLMVIAVVGFITGITMKETANRPLKGATPAASDIQEAKEILGEHYDNIEQKIEDIDQEIEELQAKRSRLVQQHPRIDE gamma_subgroup Citrobacter_koseri_ATCC_BAA-895 Citrobacter_koseri_ATCC_BAA-895 NC_009792 3494550..3496052 NA NA 0:1503 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000822.Citrobacter_(diversus)_koseri--Citrobacter_cells_are_isolated_fromwater,_sewage,_soils,_and_food,_as_well_as_from_the_feces_of_manand_other_animals,_where_they_may_be_normal_inhabitants._They_canbe_found_in_urine,_sputum,_and_other_clinical_specimens._They_cansometimes_be_opportunistic_pathogens_particularly_inimmunocompromised_patients_in_hospitals_or_in_infants_(Pepperell_etal.,_Antimicrob_Agents_Chemother._2002_Nov;46(11):3555-60._andreferences_therein).The_strain_of_Citrobacter_koseri_being_sequenced,_strain_CDC4225-83,_was_isolated_in_1983_in_Maryland,_where_it_caused_neonatalmeningitis._It_was_provided_by_Caroline_Mohr_and_Melissa_Campbellof_CDC._The_strain_is_available_from_the_American_Type_CultureCollection_as_ATCC_BAA-895_or_from_the_Salmonella_Genetic_StockCentre_as_SGSC4696._The_genome_was_sequenced_to_8X_coverage,_usingplasmid_and_fosmid_libraries_and_was_finished_to_an_error_rate_ofless_than_1_per_10,000_bases._Automated_annotation_was_performedand_manual_annotation_will_continue_in_the_labs_of_MichaelMcClelland_and_Kenneth_Sanderson._The_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID),_National_Institutes_of_Health(NIH)_has_funded_this_project.Coding_sequences_below_are_predicted_using_GeneMark_v3.3_andGlimmer2_v2.13.Intergenic_regions_not_spanned_by_GeneMark_andGlimmer2_were_blasted_against_NCBIs_non-redundant_(NR)_databaseand_predictions_generated_based_on_protein_alignments._RNA_geneswere_determined_usingtRNAscan-SE_1.23_or_Rfam_v8.0._This_sequencewas_finished_as_follows_unless_otherwise_noted:_all_regions_weredouble_stranded,_sequenced_with_an_alternate_chemistries_or_coveredby_high_quality_data_(i.e.,_phred_quality_>=30);_an_attempt_wasmade_to_resolve_all_sequencing_problems,_such_as_compressions_andrepeats;_all_regions_were_covered_by_sequence_from_more_than_onem13_subclone.COMPLETENESS:_full_length. NA 28-JUL-2011 Citrobacter_koseri_ATCC_BAA-895_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Citrobacter_koseri_A8AMW7_CITK8.gb Levinea_Young_et_al._1971 157144296 Submitted_(13-SEP-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_009792 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1503 NA genomic_DNA NA ATCC_BAA-895 NA Levinea_malonatica_Young_et_al._1971_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 290338 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Citrobacter Direct_Submission NA NC_009792.1 TTACTCGTCAATACGCGGATGCTGCTGCACTAACCGCGAACGTTTAGCCTGCAACTCCTCAATCTCCTGATCGATATCTTCGATTTTCTGCTCGATATTATCGTAGTGCTCGCCAAGGATTTCTTTCGCTTCCTGGATATCCGAGGCCGCTGGCGTCGCCCCTTTCAGCGGACGGTTGGCGGTCTCTTTCATGGTAATACCGGTAATAAAACCGACGACCGCAATCACCATCAGGTAATAGGCTGGCATCATCAGGTTCTGCGAGCTTTCCACCAGCCAGGCGGCCAGGGTCGGCGTCAGACCTGCAATCAGCACCGAGATATTAAACGCCGCCGCCAGCGCGCTGTAACGGATGTGCGTCGGGAACATCGCTGGCAGAGAAGAGGCCATCACCCCGGTAAAGCAGTTCAGGATCACCGCCAGCATCAGCAGACCGGCAAAAATCAGGCCGATAATATTACTGTTGATCAGAATAAAGGCCGGAATAGCCAGCGCAAACAGCGCGATACTGCCCATAATCACAAACGGACGACGACCGAAACGGTCACTGAGCAGCCCCATCACCGGCTGCACAAACAGCATCCCGATCATGATGGCGATAATAATCAGCACGCCGTGGTCTTCCGAGTAGTGCAGGTTATGCGACAGGTAGCTCGGCATATAGGTGAGCAGCATGTAGTAGGTCACGTTGGTGGCAATCACCAGGCCGATACACGCCAGCAGACTGCGCCAGTGTTTGGTTGCAATCTCTTTAAAGGAGACTTTTGGCCCTTCCTGCAAACCTTCGCGATCGCCCTGCTCCAGCTTATCCACATGCTGCTGGAAGGCCGGGGTCTCTTCCAGCGCATGACGCAGATAAAGACCAATGATCCCTAGCGGCAGTGCGATGAAGAACGGAATACGCCAGCCCCAGTCGAGGAAGTTCTCCTCGCCGACAACGGTGGAGATCAGCACCACCACGCCCGCGCCCAGCACGAAGCCCGCAATGGAGCCGAAGTCCAGCCAGCTTCCCATAAAGCCGCGTTTACGGTCTGGCGAGTATTCGGCGACAAAGATCGACGCGCCGGTATATTCGCCGCCGACCGAGAAGCCCTGCGCCATCTTACACAGCAGCAGCAGTATCGGCGCCCAGATGCCGATAGAGGCATAAGAGGGAATCAACCCGATACAGAACGTACTGATCGACATAATCACAATCGTGATGGCAAGAATCTTCTGGCGACCATATTTATCGCCGAGCATACCGAAGAATAAGCCGCCAAGCGGTCGAATCAGGAAGGGAACGGAGAAGGTGGCAAGTGCGGCAATCATCTGCACGCTGGGGTCAGCCCCCGGGAAAAATACTTTACCTAACGCGTAGGCGACAAACCCATAAACACCAAAATCAAACCACTCCATCGCATTACCCAGCGAGGCTGCGGTAATCGCTTTACGCAGTTTACCATCATCAATAATGGTCACATCGCGAAGCGTAATCGGTTTTACTTTTTTCCTTTTCAGCAT > 337 CPCC7001_2130 GEPR_COG0477_Permeases_of_the_major_facilitator_superfamily sugar_transporter,_MFS_superfamily EDY39250.1 11 MPMPRRPSPTWWTSARLWLLAWVASLGGLLFGYNATTLGLVATTAADDWSLDLTSQYALSGAFFLGAILGGMLMGRFSDVLSRKDVITAAAACYAFFGFACAISGRFEELLLARFLLGSIVGVTSLAIPLYIAEISRPRNRGALVSLNQLSITLGILLAFGFENGWLTTPTLSQLYTVSGILAVIVSLGAILLPESPAWLVKQGDGEQAADVLANVLGMNASSEIAEINAGLADTDRHGLVQLLQPSNRRLLGIGVLLFSVQQLSGINFILQKAGDGSLFGATPPGWNLVIAIGIVNLLGTVVFIALVDRIGRRPLLLGGMAALALCLMGLIAEAGGTLAPDAVRPVLMIGYVFCFAISLGPIPWLFVAEIYPLAIRGISMSIPITVNWVLNAFMVFAALSVRSSSDTLTVYWISLAATVAGIPLCWRLVPETRRLRFSQIRRLWHRLGTSDEGYEIAATLATSVVTIGGIFFGYNLTVIAGALLQIRSVFSLTPLTSGLVVSSVLVGAILGSYLGGHLAAVFGRRSILLSTTVLLIVGSAVSGLSESVPILVLGRLVTGVATGVTASIVPLYISEISPAAIRGRLNGIQHLAVCIGVLAAYGANTALMPNPEGWRAMLYLGSVPALMMGIGTLFLPESPRWLLSKSRFSTARLMLARLCVADPDREIARITTAAQQPTGQVKAMGLFSSTVRPPLLIGLALVFFQECTGIIIVTYYSPTIFQACGVQDPTTASLLTTIGVGVFGLLMTLLSFLVVDRIGRRKLFLLGILGILASSLGFAFIFSGPAIVSASARYLVLACFILFVTSFSLSIGAVCGMVISEIYPQAVRDRAIGFVIAFQLLCGMVASFVFPTLVEAVGLATVFSINAAITALGIPFWYAFMPETRGKSLEEIERHWLAGKRPSALR NA Cyanobium_sp._PCC_7001 Cyanobium_sp._PCC_7001 DS990556 338009..340732 Lily,E.,_Ferriera,S.,_Johnson,J.,_Kravitz,S.,_Beeson,K.,_Sutton,G.,_Rogers,Y.-H.,_Friedman,R.,_Frazier,M._and_Venter,J.C. NA 0:2724 With_funding_from_the_Gordon_and_Betty_Moore_Foundation(www.moore.org),_the_J._Craig_Venter_Institute_(www.jcvi.org)_issequencing,_assembling,_and_auto-annotating_the_genomes_ofapproximately_165_marine_microbes._These_microbes_were_contributedby_collaborators_worldwide,_and_embody_an_array_of_physiologicaldiversity,_including_carbon_fixers,_photoautotrophs,photoheterotrophs,_nitrifiers,_and_methanotrophs._This_work_wasdesigned_to_complement_other_ongoing_research_at_JCVI_and_elsewhereto_characterize_the_microbial_biodiversity_of_marine_andterrestrial_environments_through_metagenomics_profiling_ofenvironmental_samples.Please_be_aware_that_the_annotation_is_done_automatically_withlittle_or_no_manual_curation. NA 29-AUG-2008 Cyanobium_sp._PCC_7001_scf_1106012173546_genomic_scaffold,_whole_genome_shotgun_sequence. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cyanobium_sp_B5IJ33_9CHRO.gb Cyanobium_Rippka_and_Cohen-Bazire_1983 197624564 Submitted_(08-JUL-2008)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA DS990556 NA NA Chroococcales cyanophytes NA 2724 NA genomic_DNA NA PCC_7001 NA Synechococcus_sp._PCC7001 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 180281 Bacteria,_Cyanobacteria,_Chroococcales,_Cyanobium Direct_Submission NA DS990556.1 ATGCCCATGCCCAGGCGGCCCTCACCCACGTGGTGGACTTCCGCCAGGCTGTGGCTGCTGGCCTGGGTGGCCTCTCTCGGCGGCCTGTTGTTCGGCTACAACGCCACAACCCTGGGCCTGGTGGCCACCACCGCCGCTGACGACTGGTCGCTCGACCTCACATCGCAGTATGCACTCAGTGGCGCCTTCTTCCTTGGGGCGATCCTGGGCGGCATGCTCATGGGCCGCTTCAGCGATGTGCTCAGCCGCAAGGATGTGATCACAGCGGCAGCAGCTTGCTACGCCTTTTTCGGCTTCGCCTGCGCGATTTCCGGGCGTTTTGAAGAGCTGCTTCTGGCGCGCTTTCTGCTGGGATCGATCGTGGGTGTCACGTCGCTGGCGATCCCCCTCTACATCGCCGAGATCTCGCGGCCCCGCAACCGGGGTGCCCTGGTGTCCCTCAATCAGCTGAGCATCACCCTGGGCATCCTGCTGGCCTTCGGTTTTGAGAACGGCTGGCTGACCACTCCCACCCTCTCTCAGCTCTACACGGTGAGTGGAATCCTGGCGGTGATCGTGAGCCTTGGTGCGATCCTCCTGCCGGAATCGCCCGCCTGGCTGGTGAAGCAGGGGGATGGTGAGCAGGCGGCCGACGTGCTCGCCAACGTGCTGGGAATGAACGCCTCCAGCGAGATCGCCGAGATCAACGCCGGGCTTGCCGACACTGATCGCCACGGACTCGTTCAGTTGCTGCAGCCATCGAACCGGCGCCTTCTCGGCATCGGCGTTCTCCTGTTCAGCGTGCAGCAGCTGAGTGGAATCAACTTCATTCTGCAGAAGGCAGGTGACGGCTCCCTGTTCGGCGCCACACCACCGGGTTGGAATCTGGTGATCGCCATCGGCATCGTGAACCTCCTCGGCACGGTGGTGTTCATCGCGCTCGTGGACCGGATCGGGCGCAGACCCCTGCTGCTCGGGGGGATGGCTGCCCTGGCCCTCTGCCTCATGGGCCTCATCGCCGAGGCCGGTGGAACCCTGGCACCCGATGCGGTCAGGCCCGTGCTGATGATCGGCTACGTCTTCTGCTTTGCCATCAGCCTGGGGCCCATCCCCTGGCTGTTTGTGGCGGAGATCTACCCCCTGGCGATCCGCGGGATCTCGATGAGCATCCCGATCACCGTGAACTGGGTGCTCAACGCCTTCATGGTGTTCGCCGCACTGTCGGTTCGCTCATCGTCCGACACGCTCACGGTGTACTGGATTTCCCTGGCAGCCACGGTGGCGGGGATCCCCCTGTGCTGGCGCCTGGTGCCCGAAACCAGGCGGCTGCGGTTCTCCCAGATCCGGCGCTTGTGGCACAGGCTGGGTACCAGCGATGAGGGTTATGAGATTGCCGCCACCCTGGCCACCAGTGTGGTGACCATCGGGGGGATCTTCTTCGGCTACAACCTCACGGTGATTGCGGGCGCTCTGTTGCAGATTCGGAGTGTCTTCTCCCTGACCCCACTCACCAGCGGGCTCGTGGTGAGTTCAGTGCTGGTGGGAGCGATCCTCGGTTCGTACCTGGGTGGTCATCTGGCGGCGGTGTTCGGCAGGCGATCGATTCTGCTCTCCACCACCGTGCTGCTGATTGTGGGTTCAGCTGTTTCGGGCCTGTCCGAGTCCGTGCCGATCCTGGTGCTGGGCCGATTGGTCACCGGGGTTGCCACTGGTGTCACCGCCAGCATCGTGCCGCTCTACATCTCCGAAATCTCTCCAGCCGCCATTCGCGGCCGGCTCAACGGGATTCAGCATCTGGCGGTCTGTATCGGCGTGCTGGCTGCCTATGGCGCCAACACGGCCCTGATGCCCAACCCGGAAGGATGGCGAGCCATGCTCTACCTGGGTTCCGTACCGGCCCTGATGATGGGGATCGGCACGCTGTTTCTGCCTGAATCGCCCCGCTGGTTGCTGTCCAAGTCCCGCTTCAGCACCGCCAGGCTCATGCTCGCCAGGCTTTGCGTCGCCGATCCCGACCGGGAGATTGCGCGCATCACCACCGCGGCTCAGCAACCAACGGGTCAGGTCAAAGCAATGGGGCTGTTCTCCAGCACGGTGCGACCGCCGCTGCTGATCGGTCTGGCCTTGGTGTTCTTCCAGGAATGCACGGGAATCATCATTGTCACCTATTACAGCCCCACGATCTTTCAGGCCTGCGGTGTGCAGGATCCCACCACTGCCAGCCTGCTCACCACCATCGGGGTGGGTGTGTTCGGGCTGCTGATGACCCTGCTCTCCTTCCTGGTGGTGGATCGGATCGGCCGCCGCAAGCTCTTCCTGCTGGGCATTCTGGGGATACTGGCCAGTTCCCTGGGATTTGCCTTCATCTTCAGTGGACCGGCAATTGTTTCTGCCTCCGCTAGATATCTTGTGCTGGCCTGTTTCATTCTGTTTGTCACCTCGTTCTCGCTCAGCATTGGCGCCGTGTGCGGCATGGTGATTTCCGAGATCTATCCCCAGGCTGTGAGAGATCGCGCCATCGGTTTCGTGATCGCGTTCCAGCTGCTCTGCGGCATGGTGGCCTCCTTCGTGTTCCCCACGCTGGTTGAGGCGGTTGGGCTGGCCACGGTGTTCTCCATCAATGCCGCGATCACGGCCCTGGGCATCCCCTTCTGGTATGCGTTCATGCCCGAAACCCGGGGCAAGAGCCTCGAGGAGATCGAACGCCACTGGCTCGCGGGCAAGCGACCCTCAGCCCTTCGATGA > 338 CKO_04127 KEGG:_cal:orf19.3526_9.8e-14_ITR2;_myo-inositol_transporter_K08140;_COG:_COG0477_Permeases_of_the_major_facilitator_superfamily;_Psort_location:_plasma_membrane,_score:_23 hypothetical_protein YP_001455629.1 11 MDDLPLNGFHCRIAALTFGAHLTDGYVLGVVGYAMIQLTPAMQLTPFMEGMIGGSALVGLFLGSLILGWVSDYIGRQKIFTFSFMLITIASFLQFFATTPEQLIGLRILIGIGLGGDYSVGHTLLAEFAPRRHRGILLGAFSVVWTIGYVLASLVGHHFIQETPDAWRWLLASASLPALCITFLRWGTPESPRWLMRQGRITEAYAIVHRYFGTHVLLGDEVAAPTSRHIKTLFSTHYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLENALTASLMLNALLIVGALLGLLLTHLLAHRQFLLGSFMLLAATLVVMACLPAGSSLTLLLFVLFSTTISAVSNLVGVLPAESFPTDIRSLGVGFATAMSRLGAAISTSLLPWTLAQWGMQVTLLLLAGVLVIGFVVTWLWAPETKALPLVAAGSVDKRQGGVNEHSVSV gamma_subgroup Citrobacter_koseri_ATCC_BAA-895 Citrobacter_koseri_ATCC_BAA-895 NC_009792 3832951..3834279 NA NA 0:1329 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000822.Citrobacter_(diversus)_koseri--Citrobacter_cells_are_isolated_fromwater,_sewage,_soils,_and_food,_as_well_as_from_the_feces_of_manand_other_animals,_where_they_may_be_normal_inhabitants._They_canbe_found_in_urine,_sputum,_and_other_clinical_specimens._They_cansometimes_be_opportunistic_pathogens_particularly_inimmunocompromised_patients_in_hospitals_or_in_infants_(Pepperell_etal.,_Antimicrob_Agents_Chemother._2002_Nov;46(11):3555-60._andreferences_therein).The_strain_of_Citrobacter_koseri_being_sequenced,_strain_CDC4225-83,_was_isolated_in_1983_in_Maryland,_where_it_caused_neonatalmeningitis._It_was_provided_by_Caroline_Mohr_and_Melissa_Campbellof_CDC._The_strain_is_available_from_the_American_Type_CultureCollection_as_ATCC_BAA-895_or_from_the_Salmonella_Genetic_StockCentre_as_SGSC4696._The_genome_was_sequenced_to_8X_coverage,_usingplasmid_and_fosmid_libraries_and_was_finished_to_an_error_rate_ofless_than_1_per_10,000_bases._Automated_annotation_was_performedand_manual_annotation_will_continue_in_the_labs_of_MichaelMcClelland_and_Kenneth_Sanderson._The_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID),_National_Institutes_of_Health(NIH)_has_funded_this_project.Coding_sequences_below_are_predicted_using_GeneMark_v3.3_andGlimmer2_v2.13.Intergenic_regions_not_spanned_by_GeneMark_andGlimmer2_were_blasted_against_NCBIs_non-redundant_(NR)_databaseand_predictions_generated_based_on_protein_alignments._RNA_geneswere_determined_usingtRNAscan-SE_1.23_or_Rfam_v8.0._This_sequencewas_finished_as_follows_unless_otherwise_noted:_all_regions_weredouble_stranded,_sequenced_with_an_alternate_chemistries_or_coveredby_high_quality_data_(i.e.,_phred_quality_>=30);_an_attempt_wasmade_to_resolve_all_sequencing_problems,_such_as_compressions_andrepeats;_all_regions_were_covered_by_sequence_from_more_than_onem13_subclone.COMPLETENESS:_full_length. NA 28-JUL-2011 Citrobacter_koseri_ATCC_BAA-895_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Citrobacter_koseri_A8ANY0_CITK8.gb Levinea_Young_et_al._1971 157144296 Submitted_(13-SEP-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_009792 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1329 NA genomic_DNA NA ATCC_BAA-895 NA Levinea_malonatica_Young_et_al._1971_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 290338 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Citrobacter Direct_Submission NA NC_009792.1 TTAAACGCTAACAGAATGTTCATTCACACCTCCCTGTCTTTTGTCCACACTCCCGGCAGCCACCAGCGGCAGCGCCTTGGTTTCCGGCGCCCACAGCCAGGTCACCACAAATCCGATGACTAATACCCCAGCCAGCAGTAATAGCGTAACCTGCATTCCCCACTGCGCCAGCGTCCAGGGCAACAAACTGGTGCTGATCGCCGCCCCTAATCGGCTCATTGCCGTGGCAAACCCGACGCCCAGGGAACGAATATCCGTCGGGAAGCTTTCCGCAGGCAGAACCCCCACCAGATTGCTGACGGCAGAAATGGTGGTACTGAACAACACAAACAGCAACAGCGTCAGGCTGCTTCCCGCCGGTAAACAAGCCATGACGACAAGCGTCGCGGCGAGCAGCATAAAACTGCCGAGCAGAAATTGGCGGTGCGCCAACAGGTGTGTTAACAACAGCCCCAGCAGCGCGCCAACAATCAGCAGCGCGTTAAGCATCAGGCTGGCGGTTAGCGCATTTTCAAGACCGATCGTTTGTGCAATGGTGGGAAGCCAGGTGTAAATCACAAACCACGGGATCACCAGGCAGACAAAGAACACGCTGTTAAACGCGGTTCTTCGCCAGTAATGCGTTGAAAATAGCGTTTTGATATGTCTGCTCGTCGGCGCCGCCACCTCATCGCCGAGCAGCACATGCGTGCCAAAATAGCGGTGCACAATCGCATACGCTTCTGTTATCCGCCCCTGACGCATCAGCCAGCGAGGCGACTCCGGCGTTCCCCAGCGTAAGAACGTAATGCACAGCGCGGGTAATGATGCCGATGCCAGCAGCCAGCGCCAGGCATCCGGCGTTTCCTGAATAAAATGATGCCCCACCAGGCTCGCCAGAACATAGCCGATAGTCCACACCACACTGAATGCGCCCAGTAATATTCCCCGATGGCGACGCGGCGCAAATTCAGCCAGCAATGTATGACCAACCGAGTAGTCACCGCCAAGGCCGATACCAATCAGAATGCGCAAGCCAATAAGCTGTTCCGGCGTTGTGGCAAAAAACTGTAGGAAAGAGGCGATGGTTATCAGCATAAAGCTGAAGGTAAAAATTTTCTGACGCCCGATATAATCAGATACCCATCCCAGGATCAGGCTACCGAGAAAAAGTCCAACCAGCGCCGAGCCGCCAATCATCCCTTCCATAAAAGGCGTCAGTTGCATGGCGGGGGTCAGTTGGATCATGGCATAGCCGACGACGCCTAATACATAGCCATCGGTCAAATGCGCGCCGAATGTCAGCGCAGCAATGCGGCAATGAAAACCATTCAGCGGTAAATCATCCAT > 339 CSAG_02682 NA arabinose-proton_symporter EEH94328.1 11 MAWLLCIWQEKMVSINNDAALAPRPVRDTRRMNMFVSISAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVVGSLGSAFASSVEMLIFARVVLGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKARDELNEIRESLKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMAIGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNVVFIGITFWLIPETKNVTLEHIERKLMAGEKLRDIGV gamma_subgroup Citrobacter_sp._30_2 Citrobacter_sp._30_2 GG657367 359189..360640 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Allen-Vercoe,E.,_Strauss,J.,_Ambrose,C.,_Lander,E.,_Nusbaum,C.,_Ilzarbe,M.,_Galagan,J._and_Birren,B. NA 0:1452 This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_coverage:_26.61xSequencing_technology:_454Annotation_was_added_to_the_scaffolds_in_April_2009. NA 08-MAY-2009 Citrobacter_sp._30_2_genomic_scaffold_supercont1.2,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Citrobacter_sp_C1MB20_9ENTR.gb Levinea_Young_et_al._1971 224020644 Unpublished NA GG657367 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1452 NA genomic_DNA NA 30_2 NA Citrobacter_sp._30_2 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 469595 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Citrobacter The_Genome_Sequence_of_Citrobacter_sp._30_2 NA GG657367.1 TTACACCCCAATATCTCTTAACTTCTCGCCCGCCATCAGCTTACGTTCGATATGCTCCAGCGTGACGTTTTTGGTTTCTGGAATCAGCCAGAACGTAATACCGATAAACACAACGTTCAGCGCGGTATAAAGCCAGAACGTACCGGCGGCGCCAATGCTGTCGAGCAGCGTCAGGAACGTTGCGCCAATGATCATGTTCGACACCCAGTTGGTGGTGGTGGAGCAGGTAATACCAAAATCACGGCATTTCAGTGGCTGAATTTCCGAACACAGGATCCACACCACCGGTGCGGCGCTCATCGCATAGCCTGCAATACACATCATCGTCATGCCAACTGACAGCCAGGATAGCCCACTGGAAGCCGTGCCGTTATCAAACTGCATCAGACAATAACCAAGCACCAGCGTCCCTATAGCCATTACGCTGAAACCAATTTTCAGCGCCGGTTTACGTCCTGCTTTGTCGACCGTGAAGACGGCAATAAAGGTGGCGAACATAAACGTTAAGCCAACTACCAGCGTGGCAATCATCTGCTGCTCTGTGGTGGTAAAACCCGCCATTTTAAAAATGCGCGGCGCGTAATACATGATGATGTTCATTCCGGTGAACTGCTGCATCGCCTGCAGTAACATTCCGAGGAAAACCGCACGACGCACGTTACGGTTAATTTTAAACAGCGCCCAACCACCTTGCTTCAGCTTCAGGCTTTCACGGATTTCGTTCAGCTCATCGCGGGCTTTTTCTGACGTATCGCGCAACATGCGCAGTACTTCTTCAGCTTCGATGTGGCGACCTTTCTCCGCCAGCCAGCGCGGGCTGTTGGGCAAGAAAACAACCAGAATAATCAGCAATACAGCCGGAAGCGCCAGCACGCCAAGCATAGCGCGCCAGTTACCGCTGTAGCTGAACGCGGTATCGGACAAAAAGGCCAAAACGATGCCCAGCGTCACCATCAGCTGATACATACTGATCATCTTGCCACGCACATTTTCGCTGGCCATTTCAGAGAGATAGAGCGGTGCGGTGTAAGACGCGATCCCCACCGCTACGCCCAGCACCACGCGGGCAAAAATGAGCATTTCTACGCTGGAGGCAAACGCCGAGCCCAGAGATCCGACGACGAAAAGGATCGCGCCCGCCATCAGGCTGTATTTGCGCCCCAGGCGGAATGACAACCAACCGTTAAACAGCGCACCAATTGCCGCACCCAGCATCATGCTGCTTACCACCCACTCCTGCAGGCGGCTGGTCAACACAAAGTGATCGGTGATAAAAGGCAACGCGCCAGCAATCACGCCAATATCCAGGCCGAATAACAACCCTGCGACAGCCGCAGAGATAGAAACAAACATATTCATACGTCGCGTATCGCGCACTGGGCGCGGCGCTAAAGCAGCATCATTATTTATTGAGACCATTTTTTCCTGCCAGATACAGAGTAACCATGCCAT > 340 CIT292_05904 KEGG:_rsa:RSal33209_0101_0.0072_lipase/esterase putative_lipoprotein EFE09748.1 11 METTVRLFILTSILTISGCSHMANDQWSGQDKAQHFIASAMLAAAGNEYALHQGYSRDRSAAIGLMFSVSLGASKELWDSRPAGSGWSWKDFAWDVAGASAGYTIWQLAHY gamma_subgroup Citrobacter_youngae_ATCC_29220 Citrobacter_youngae_ATCC_29220 ABWL02000002 604..1902 Fulton,L.,_Clifton,S.,_Fulton,B.,_Xu,J.,_Minx,P.,_Pepin,K.H.,_Johnson,M.,_Thiruvilangam,P.,_Bhonagiri,V.,_Nash,W.E.,_Mardis,E.R._and_Wilson,R.K. NA 1295:>1299 Citrobacter_sp._(GenBank_Accession_Number_for_16S_rDNA_gene:AJ564736,_the_16S_rDNA_gene_of_a_related_Citrobacter_sp.,_not_thesequenced_strain)_is_a_member_of_the_Proteobacteria_division_of_thedomain_bacteria_and_has_been_isolated_from_human_feces._Thesequenced_strain_was_obtained_from_ATCC_(ATCC_29220)._The_16S_rRNAsequence_from_ATCC_29220_does_not_match_C._youngae_strains_or_C.freundii_or_C._farmeri_at_99%_identity_(only_97%_identity);therefore_this_may_be_a_different_Citrobacter_species.We_have_performed_one_round_of_automated_sequence_improvement(pre-finishing),_along_with_manual_improvement_that_includesbreaking_apart_any_mis-assembly,_and_making_manual_joins_wherepossible._Manual_edits_also_are_made_where_the_consensus_appears_tobe_incorrect._All_low_quality_data_on_the_ends_of_contigs_isremoved._Contigs_are_ordered_and_oriented_where_possible.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.This_work_was_supported_by_the_National_Human_Genome_ResearchInstitute_and_the_NIH_Roadmap_Human_Microbiome_Projecthttp://nihroadmap.nih.gov/hmp/.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_32.9xSequencing_Technology:_454Annotation_was_added_to_the_contigs_in_March_2010. NA 01-JUN-2010 Citrobacter_youngae_ATCC_29220_C_sp-1.0.1_Cont0.2,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Citrobacter_youngae_D4B6G7_9ENTR.gb Levinea_Young_et_al._1971 282597573 Submitted_(16-SEP-2008)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ABWL02000002 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1299 NA genomic_DNA NA ATCC_29220 NA Citrobacter_youngae_Brenner_et_al._1993 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 500640 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Citrobacter Direct_Submission NA ABWL02000002.1 ATGGCTGATAGCAGTGTAACTGAGAACGGGGCGCTGGCAGATGGTGATACCCGTCGTCGTATATGGGCGATTGTCGGAGCATCATCAGGGAATCTGGTCGAATGGTTTGATTTCTATATCTACTCTTTCTGCTCTCTCTATTTTGCTCATATCTTTTTTCCCTCCGGAAACACCACCACCCAGCTCTTACAAACCGCCGGCGTTTTTGCCGCTGGCTTCCTGATGCGACCGATTGGCGGCTGGTTGTTTGGTCGCATCGCAGATAAGCACGGGCGTAAAAAATCGATGCTGTTGTCAGTGTGCATGATGTGTATGGGATCGCTGGTGATCGCCTGTCTGCCGGGATATGAAACAATCGGTACCTGGGCTCCAGCGCTACTGCTGCTGGCCAGATTATTTCAGGGGTTGTCTGTCGGCGGTGAATACGGAACCAGCGCTACCTACATGAGCGAAGTGGCTATTGAAGGTAAGAAAGGTTTTTACGCTTCATTCCAGTACGTAACATTAATTGGCGGGCAGCTACTGGCGTTGCTGGTTGTGGTCATCTTACAGCAAACGCTAGAAGACTCTGCGCTCAGAGAATGGGGCTGGCGTATTCCATTTGCGCTGGGCGCGGTGCTGGCTATTGTCGCGCTATGGTTGCGTCGTCAGTTAGATGAAACCTCGAAGCAGGATGTTCGTGCGTTAAAAGAAGCGGGTTCTCTGAAAGGTTTATGGCGTAACCGTAAAGCCTTTATTATGGTGCTGGGTTTTACCGCCGCTGGCTCGCTGTGTTTTTATACGTTCACAACCTACATGCAGAAATATCTGGTCAACACCGCAGGTATGCATGCGAATGTAGCCAGTGGGATTATGACGGCGGCACTGTGTGTGTTCATGCTGGTGCAGCCGCTGTTCGGCGCGTTGTCAGATAAAATTGGCAGACGCACTTCCATGCTATGCTTTGGCGCATTAGCCACGATTTTCACCGTCCCTATTCTGACGGCTTTGCAGAGCGTGACTTCTCCCTATGTGGCGTTTGCTCTGGTGATGTGTGCGTTGCTGATCGTGAGTTTTTATACATCGATTAGCGGCATACTGAAGGCTGAAATGTTCCCAGCGCAGGTGCGCGCCCTGGGGGTTGGGCTATCTTATGCGGTGGCGAATGCTCTGTTTGGTGGTTCGGCTGAATATGTCGCCTTATCCCTGAAGTCCGTTGGAATGGAAACGACGTTCTTCTGGTACGTTACGGCGCTGGCCGTAGTCGCATTTTTGGTATCGCTGATGCTACATGGTAAGGGGAAAGGTCTGCGCCTCTAG > 341 CIT292_09708 KEGG:_ecl:EcolC_0874_1.8e-238_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 D-xylose-proton_symporter EFE06658.1 11 MVLLCIWQEKMVSINNDAALAPRPVRDTRRMNMFVSISAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVVGSLGSALASSVEMLIFARVVLGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKARDELNEIRESLKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMAIGTLVLGYCLMQFDNGTASNGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNVAFIGITFWLIPETKNVTLEHIERKLMSGEKLRNIGV gamma_subgroup Citrobacter_youngae_ATCC_29220 Citrobacter_youngae_ATCC_29220 ABWL02000021 120066..121514 Fulton,L.,_Clifton,S.,_Fulton,B.,_Xu,J.,_Minx,P.,_Pepin,K.H.,_Johnson,M.,_Thiruvilangam,P.,_Bhonagiri,V.,_Nash,W.E.,_Mardis,E.R._and_Wilson,R.K. NA 0:1449 Citrobacter_sp._(GenBank_Accession_Number_for_16S_rDNA_gene:AJ564736,_the_16S_rDNA_gene_of_a_related_Citrobacter_sp.,_not_thesequenced_strain)_is_a_member_of_the_Proteobacteria_division_of_thedomain_bacteria_and_has_been_isolated_from_human_feces._Thesequenced_strain_was_obtained_from_ATCC_(ATCC_29220)._The_16S_rRNAsequence_from_ATCC_29220_does_not_match_C._youngae_strains_or_C.freundii_or_C._farmeri_at_99%_identity_(only_97%_identity);therefore_this_may_be_a_different_Citrobacter_species.We_have_performed_one_round_of_automated_sequence_improvement(pre-finishing),_along_with_manual_improvement_that_includesbreaking_apart_any_mis-assembly,_and_making_manual_joins_wherepossible._Manual_edits_also_are_made_where_the_consensus_appears_tobe_incorrect._All_low_quality_data_on_the_ends_of_contigs_isremoved._Contigs_are_ordered_and_oriented_where_possible.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.This_work_was_supported_by_the_National_Human_Genome_ResearchInstitute_and_the_NIH_Roadmap_Human_Microbiome_Projecthttp://nihroadmap.nih.gov/hmp/.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_32.9xSequencing_Technology:_454Annotation_was_added_to_the_contigs_in_March_2010. NA 01-JUN-2010 Citrobacter_youngae_ATCC_29220_C_sp-1.0.1_Cont2.3,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Citrobacter_youngae_D4BGQ8_9ENTR.gb Levinea_Young_et_al._1971 282597554 Submitted_(16-SEP-2008)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ABWL02000021 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1449 NA genomic_DNA NA ATCC_29220 NA Citrobacter_youngae_Brenner_et_al._1993 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 500640 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Citrobacter Direct_Submission NA ABWL02000021.1 ATGGTTTTACTCTGTATCTGGCAGGAAAAAATGGTCTCAATAAATAATGATGCTGCTTTAGCGCCGCGCCCAGTGCGCGATACGCGACGTATGAATATGTTTGTCTCTATCTCTGCGGCTGTCGCAGGATTGTTATTCGGCCTGGATATTGGCGTGATAGCGGGCGCGTTGCCTTTCATCACCGATCACTTTGTCCTGACCAGCCGCCTGCAGGAGTGGGTGGTGAGCAGCATGATGCTGGGCGCGGCAATTGGCGCGCTGTTTAACGGCTGGCTGTCATTCCGTTTGGGGCGTAAATACAGCCTGATGGCGGGCGCCATTCTGTTTGTCGTCGGCTCACTGGGATCGGCGTTGGCTTCCAGCGTCGAAATGCTCATTTTTGCCCGCGTGGTGCTGGGCGTTGCCGTGGGTATCGCGTCTTACACCGCGCCGCTGTATCTCTCAGAAATGGCCAGTGAGAACGTGCGCGGTAAGATGATCAGTATGTATCAGTTGATGGTGACGCTGGGCATTGTGCTGGCCTTCTTATCCGATACGGCGTTCAGCTACAGCGGTAACTGGCGCGCGATGCTGGGGGTGCTGGCGCTCCCGGCGGTGTTACTGATTATCCTGGTGGTTTTCCTGCCGAACAGCCCGCGCTGGCTGGCGGAAAAAGGTCGCCATATCGAAGCTGAAGAAGTATTGCGTATGCTGCGCGATACGTCAGAAAAAGCCCGTGATGAGCTGAACGAGATCCGTGAAAGCCTGAAGCTGAAGCAGGGCGGCTGGGCGCTGTTTAAAATTAACCGTAACGTGCGTCGCGCGGTTTTCCTCGGAATGTTGTTGCAGGCGATGCAGCAGTTCACTGGGATGAATATCATCATGTACTACGCGCCGCGCATTTTTAAAATGGCGGGCTTTACCACCACCGAACAGCAGATGATTGCCACGCTGGTGGTCGGCTTAACGTTCATGTTCGCGACGTTTATTGCCGTCTTTACGGTAGATAAAGCCGGACGCAAACCGGCGCTGAAAATTGGTTTCAGCGTGATGGCCATTGGGACGCTGGTGCTCGGTTATTGCCTGATGCAGTTCGATAACGGTACCGCATCAAACGGGCTTTCCTGGCTGTCTGTCGGTATGACCATGATGTGCATTGCAGGCTATGCGATGAGCGCCGCGCCGGTGGTGTGGATCCTGTGCTCGGAAATCCAGCCGCTGAAATGCCGCGATTTTGGTATTACCTGCTCGACCACCACCAACTGGGTGTCGAACATGATCATCGGCGCCACGTTCCTGACGCTGCTCGACAGCATCGGCGCGGCGGGTACGTTCTGGCTGTATACCGCGTTGAACGTCGCCTTTATCGGTATTACATTCTGGCTCATCCCAGAAACCAAAAACGTCACGCTGGAACACATCGAGCGCAAGCTGATGTCGGGTGAGAAGCTAAGAAATATTGGGGTGTAA > 342 CIT292_11085 KEGG:_rcm:A1E_04550_1.2e-23_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 proline_permease EFE05431.1 11 MLKRKKIKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYASIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEENFLEWGWRIPFFLALPLGLIGLYLRHALEETPAFQQHVDKLEQGDRQGLQEGPKVSFKEIATKHWRSLLACIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVIMGSIALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVIAVVGLITGITMKETANKPLKGATPAASDIQEAKEILGEHYDNIEHKIEDIDQEIAELQLKRSRLVQQHPRIDE gamma_subgroup Citrobacter_youngae_ATCC_29220 Citrobacter_youngae_ATCC_29220 ABWL02000036 16184..17686 Fulton,L.,_Clifton,S.,_Fulton,B.,_Xu,J.,_Minx,P.,_Pepin,K.H.,_Johnson,M.,_Thiruvilangam,P.,_Bhonagiri,V.,_Nash,W.E.,_Mardis,E.R._and_Wilson,R.K. NA 0:1503 Citrobacter_sp._(GenBank_Accession_Number_for_16S_rDNA_gene:AJ564736,_the_16S_rDNA_gene_of_a_related_Citrobacter_sp.,_not_thesequenced_strain)_is_a_member_of_the_Proteobacteria_division_of_thedomain_bacteria_and_has_been_isolated_from_human_feces._Thesequenced_strain_was_obtained_from_ATCC_(ATCC_29220)._The_16S_rRNAsequence_from_ATCC_29220_does_not_match_C._youngae_strains_or_C.freundii_or_C._farmeri_at_99%_identity_(only_97%_identity);therefore_this_may_be_a_different_Citrobacter_species.We_have_performed_one_round_of_automated_sequence_improvement(pre-finishing),_along_with_manual_improvement_that_includesbreaking_apart_any_mis-assembly,_and_making_manual_joins_wherepossible._Manual_edits_also_are_made_where_the_consensus_appears_tobe_incorrect._All_low_quality_data_on_the_ends_of_contigs_isremoved._Contigs_are_ordered_and_oriented_where_possible.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.This_work_was_supported_by_the_National_Human_Genome_ResearchInstitute_and_the_NIH_Roadmap_Human_Microbiome_Projecthttp://nihroadmap.nih.gov/hmp/.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_32.9xSequencing_Technology:_454Annotation_was_added_to_the_contigs_in_March_2010. NA 01-JUN-2010 Citrobacter_youngae_ATCC_29220_C_sp-1.0.1_Cont5.5,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Citrobacter_youngae_D4BKK5_9ENTR.gb Levinea_Young_et_al._1971 282597539 Submitted_(16-SEP-2008)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ABWL02000036 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1503 NA genomic_DNA NA ATCC_29220 NA Citrobacter_youngae_Brenner_et_al._1993 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 500640 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Citrobacter Direct_Submission NA ABWL02000036.1 TTACTCATCAATACGCGGGTGCTGCTGCACCAGGCGCGAACGCTTAAGCTGCAGCTCCGCAATTTCCTGATCGATATCTTCGATTTTATGCTCGATGTTATCGTAGTGCTCACCCAGGATCTCTTTCGCTTCCTGAATATCCGAAGCGGCAGGCGTCGCCCCTTTCAGCGGTTTATTCGCGGTCTCTTTCATGGTGATACCGGTAATTAAACCAACCACCGCAATCACCATCAGGTAGTAAGCAGGCATCATCAGATTCTGCGAACTTTCCACCAGCCAGGCAGCCAGGGTCGGCGTCAGACCCGCAACCAGGACCGAGATATTAAACGCGGCGGCCAACGCGCTATAACGAATATGCGTCGGGAACATTGCCGGTAACGTTGACGCCATCACCCCGGTAAAGCAGTTGAGAATCACCGCCAGCATCAGCAACCCGGCAAAAATCAGCCCGATGACATTACTGTTAATCAGGATAAACGCCGGAATGGCCAGCACAAACAGCGCAATACTGCCCATAATCACAAACGGGCGACGACCGAAGCGGTCGCTGAGCAGCCCCATCACCGGCTGCACAAACAGCATACCAATCATAATGGCGATAATAATCAACACGCCGTGGTCTTCAGAGTAATGCAGGTTATGCGACAGGTAGCTCGGCATATAGGTGAGCAGCATGTAATAGGTGACGTTGGTGGCGATCACCAGACCGATACATGCCAGCAGGCTGCGCCAGTGTTTGGTCGCAATCTCTTTAAACGAAACCTTCGGACCTTCCTGCAGACCCTGACGATCGCCCTGCTCCAGTTTATCCACGTGCTGCTGGAACGCCGGCGTCTCTTCCAGCGCATGACGCAGGTACAGGCCTATCAGCCCTAACGGCAGTGCCAGGAAGAACGGAATACGCCAACCCCACTCAAGGAAGTTTTCTTCGCCAACGATAGTTGAGATCAGGACCACCACGCCCGCACCCAGCACAAACCCGGCGATTGAGCCGAAGTCCAGCCAACTGCCCATAAATCCGCGCTTACGATCAGGCGAGTATTCTGCGACAAATATCGATGCCCCGGTGTACTCTCCGCCAACCGAGAACCCCTGCGCCATCTTACACAGCAACAGCAGAATCGGCGCCCAGATACCAATCGATGCATACGAGGGAATAAGGCCGATACAGAAGGTACTTATCGACATAATCACGATGGTGATAGCAAGGATCTTCTGACGACCGTATTTATCGCCGAGCATACCGAAGAACAATCCGCCAAGCGGTCGAATCAGAAAGGGAACTGAGAAAGTGGCGAGTGCGGCAACCATCTGCACGCTGGGGTCAGCCCCCGGGAAGAACACTTTACCTAATGCGTAAGCAACAAACCCATAAACACCAAAATCAAACCACTCCATCGCATTACCTAACGACGCTGCGGTAATGGCTTTTCGCAATTTTCCGTCATCAATGATGGTGACGTCGCGTAGCGTAATTGGTTTTATTTTTTTCCTTTTTAGCAT > 343 CMM_2118 putative_sugar_MFS_permease_(BAC00372.1|_Permeases_of_the_major_facilitator_superfamily_Corynebacterium_glutamicum_ATCC_13032;_ZP_00227700.1|_COG0477:_Permeases_of_the_major_facilitator_superfamily_Kineococcus_radiotolerans_SRS30216)._pfam00083,_Sugar_tr,_Sugar_(and_other)_transporter._InterPro:_General_substrate_transporters.;_Specificity_unclear putative_sugar_MFS_permease YP_001222863.1 11 MTTTISPRTRAQRLDALPWTRAHSRILGGSGVGWALDAMDVGLISFVIAQLAVVWEADAGQLGLVASAGFLGMAIGASVGGLVADRIGRRQVFALTLLVYGVATGVSALAMSVGALIALRFVVGLGLGAELPVASTLVSEFSPARIRGRVIVILESSWAVGWTAAALIGYLVIPASDDGWRWALALGAVPAVWAIVVRLRLPESVRFLEAKGRHREAERVVRDLEVAAGAGADPATDGAAGSAAEARAADAATTTATATGSAPDDDAAAPRERLFGARLRRRTLSLWIVWFCVNFAYYGAFIWLPTLLVAQGFSLVRSFEYTLLITLAQLPGYAVSAWLVEKRGRRVTLAVFLAGSAVSAGLFGTADSVTTILVFGALMSFSNLGAWGALYAVTPELYPTRVRATGAGSAAGFGRLASIVAPLCVPPLLALGGVALPFGVFAAVFALAAAAALTLPDLRGAALED high_GC_Gram+ Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 NC_009480 2392771..2394168 Gartemann,K.H.,_Abt,B.,_Bekel,T.,_Burger,A.,_Engemann,J.,_Flugel,M.,_Gaigalat,L.,_Goesmann,A.,_Grafen,I.,_Kalinowski,J.,_Kaup,O.,_Kirchner,O.,_Krause,L.,_Linke,B.,_McHardy,A.,_Meyer,F.,_Pohle,S.,_Ruckert,C.,_Schneiker,S.,_Zellermann,E.M.,_Puhler,A.,_Eichenlaub,R.,_Kaiser,O._and_Bartels,D. NA 0:1398 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM711867.COMPLETENESS:_full_length. NA 26-JAN-2012 Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382_chromosome,_complete_genome. NA Microbacteriaceae_Park_et_al._1995_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Clavibacter_michiganensis_A5CSW3_CLAM3.gb Clavibacter_Davis_et_al._1984 148271178 J._Bacteriol._190_(6),_2138-2149_(2008) NA NC_009480 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 18192381 1398 NA genomic_DNA NA NCPPB_382 NA Pseudomonas_michiganensis NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Micrococcineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA Corynebacterium_michiganense_subsp._michiganense NA NA NA prokaryotes NA 443906 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Micrococcineae,_Microbacteriaceae,_Clavibacter The_genome_sequence_of_the_tomato-pathogenic_actinomycete_Clavibacter_michiganensis_subsp._michiganensis_NCPPB382_reveals_a_large_island_involved_in_pathogenicity NA NC_009480.1 ATGACCACGACCATCTCGCCGCGCACCCGCGCCCAGCGCCTCGACGCCCTCCCCTGGACGCGCGCCCACTCCCGCATCCTCGGCGGCAGCGGGGTCGGCTGGGCGCTCGACGCGATGGACGTCGGGCTCATCTCGTTCGTCATCGCGCAGCTCGCGGTCGTGTGGGAGGCCGATGCGGGCCAGCTCGGCCTCGTCGCCTCCGCCGGGTTCCTCGGCATGGCGATCGGCGCGAGCGTCGGCGGGCTGGTGGCCGACCGCATCGGCCGCCGGCAGGTGTTCGCGCTCACGCTGCTGGTCTACGGCGTGGCCACGGGCGTCTCGGCGCTCGCGATGTCGGTGGGCGCGCTCATCGCGCTCCGCTTCGTCGTGGGGCTCGGGCTCGGCGCGGAGCTGCCCGTCGCGTCGACGCTCGTCAGCGAGTTCTCGCCCGCACGGATCCGGGGACGCGTCATCGTGATCCTCGAGTCGTCGTGGGCCGTCGGCTGGACCGCGGCGGCGCTCATCGGCTACCTCGTGATCCCCGCGAGCGACGACGGCTGGCGCTGGGCGCTCGCGCTCGGCGCCGTGCCCGCGGTGTGGGCGATCGTCGTGCGGCTGCGCCTGCCGGAGTCGGTGCGGTTCCTCGAGGCGAAGGGCCGGCACCGGGAGGCCGAGCGCGTGGTGCGCGACCTCGAGGTGGCGGCGGGGGCGGGGGCGGATCCGGCGACGGACGGCGCTGCCGGCTCGGCGGCCGAGGCCCGGGCCGCGGACGCCGCCACCACCACCGCCACCGCCACCGGGTCCGCGCCCGACGACGACGCCGCCGCGCCCCGCGAGCGCCTCTTCGGCGCCCGCCTCCGTCGCCGCACGCTCTCCCTCTGGATCGTGTGGTTCTGCGTCAACTTCGCCTACTACGGCGCCTTCATCTGGCTGCCGACGCTGCTCGTCGCGCAGGGCTTCTCTCTCGTGCGCTCGTTCGAGTACACGCTCCTCATCACGCTCGCGCAGCTGCCGGGCTACGCGGTCTCCGCCTGGCTCGTGGAGAAGCGGGGTCGCCGCGTGACGCTCGCGGTCTTCCTCGCGGGATCCGCCGTCTCGGCCGGCCTGTTCGGCACCGCCGACTCCGTGACGACGATCCTCGTGTTCGGCGCCCTCATGTCGTTCTCGAACCTCGGCGCGTGGGGCGCGCTCTACGCCGTGACGCCGGAGCTCTACCCGACCCGCGTGCGCGCCACGGGCGCCGGCAGCGCGGCGGGCTTCGGGCGCCTCGCCTCGATCGTCGCGCCGCTGTGCGTGCCGCCGCTCCTGGCGCTCGGCGGCGTCGCGCTGCCGTTCGGCGTCTTCGCGGCCGTCTTCGCGCTGGCCGCAGCTGCTGCGCTCACCCTGCCGGATCTCCGCGGCGCGGCCCTCGAGGACTGA > 344 CMS_0208 NA transport_protein YP_001708994.1 11 MVIASLIGTSIEFFDFYVYATAAVLVFPALFFANDDPAVAQLQSLAVFGVAFFARPIGSVLFGHFGDRFGRTHTLVASLLTMGIATVLIGSLPSGLTPGWEIAAPATLAVLRFIQGLGLGGEWGGAALLATENAPEGKRAVYGTFPQLGAPIGFFLSTGLFLVLSLTLSPADLQSWGWRVPFLASAVLVLVGLYVRVKLVEAPEFQAVLDRGETSRLPLGRTIRTGWRGLVLGALALLAIFTLFYLMTTFTVTYGTSPRTAEAAEAAATKAGKPFDASSFHAGLGYARTDFLLMLLVGVVFFAIAIVVSGVLAERRGARPVVAVSAAGMVVFGLLMDPLLATGVPGALLFVILGFALIGIGYGAVGSLLPGLFATDVRYTGASLAFSLAGIIGGAVAPFIATWLWDIGGGGVALVGVYLSVASAISLVALLVVREHGQAKAAPAEAVAAR high_GC_Gram+ Clavibacter_michiganensis_subsp._sepedonicus Clavibacter_michiganensis_subsp._sepedonicus NC_010407 245300..246652 Bentley,S.D.,_Corton,C.,_Brown,S.E.,_Barron,A.,_Clark,L.,_Doggett,J.,_Harris,B.,_Ormond,D.,_Quail,M.A.,_May,G.,_Francis,D.,_Knudson,D.,_Parkhill,J._and_Ishimaru,C.A. NA 0:1353 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM849034.Details_of_Clavibacter_michiganensis_subspecies_sepedonicussequencing_at_the_Sanger_Institute_are_available_athttp://www.sanger.ac.uk/Projects/C_michiganensis/.COMPLETENESS:_full_length. NA 19-JAN-2012 Clavibacter_michiganensis_subsp._sepedonicus_chromosome,_complete_genome. NA Microbacteriaceae_Park_et_al._1995_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Clavibacter_michiganensis_B0RAG3_CLAMS.gb Clavibacter_Davis_et_al._1984 170780462 J._Bacteriol._190_(6),_2150-2160_(2008) NA NC_010407 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 18192393 1353 NA genomic_DNA NA ATCC33113 NA Pseudomonas_michiganensis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Micrococcineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA Pseudobacterium_sepedonicum NA NA NA prokaryotes NA 31964 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Micrococcineae,_Microbacteriaceae,_Clavibacter Genome_of_the_actinomycete_plant_pathogen_Clavibacter_michiganensis_subsp._sepedonicus_suggests_recent_niche_adaptation NA NC_010407.1 TCAGCGCGCGGCGACCGCCTCAGCGGGCGCGGCCTTCGCCTGGCCGTGCTCGCGCACCACCAGGAGCGCCACGAGCGAGATCGCCGACGCGACGCTGAGGTAGACGCCCACCAGCGCGACCCCTCCGCCTCCGATGTCCCAGAGCCAGGTGGCGATGAACGGCGCGACGGCCCCGCCGATGATGCCCGCGAGGCTGAACGCGAGGGACGCGCCCGTGTAGCGGACGTCGGTGGCGAACAGGCCGGGCAGCAGGGATCCGACGGCGCCGTACCCGATGCCGATGAGCGCGAAGCCGAGGATCACGAACAGGAGCGCGCCGGGCACGCCCGTCGCGAGCAGGGGATCCATCAGCAGGCCGAACACGACCATGCCGGCGGCGCTCACGGCCACGACCGGCCGAGCGCCGCGACGCTCGGCGAGCACGCCCGAGACCACGATGGCGATCGCGAAGAACACGACGCCGACGAGGAGCATGAGCAGGAAGTCGGTGCGGGCGTAGCCGAGGCCGGCGTGGAACGAGGACGCGTCGAACGGCTTGCCCGCCTTCGTGGCGGCGGCCTCGGCGGCCTCCGCGGTGCGCGGCGACGTGCCGTAGGTGACCGTGAACGTGGTCATCAGGTAGAAGAGCGTGAAGATGGCCAAGAGGGCGAGCGCCCCGAGGACCAGCCCGCGCCAGCCGGTGCGGATGGTGCGGCCGAGCGGGAGGCGGGACGTCTCGCCGCGGTCGAGGACCGCCTGGAACTCCGGCGCCTCCACGAGCTTGACGCGCACGTAGAGGCCGACGAGCACGAGCACGGCGCTGGCGAGGAACGGCACGCGCCAGCCCCACGACTGCAGGTCGGCGGGGGAGAGCGTGAGCGAGAGCACCAGGAACAGGCCGGTGCTGAGGAAGAACCCGATGGGCGCGCCGAGCTGCGGGAACGTGCCGTAGACGGCCCGCTTCCCCTCGGGCGCGTTCTCGGTGGCCAGCAGCGCCGCGCCGCCCCACTCGCCGCCGAGACCGAGGCCCTGGATGAAGCGGAGCACGGCGAGGGTGGCGGGGGCCGCGATCTCCCAGCCCGGCGTGAGCCCGCTCGGGAGGGAGCCGATCAGCACGGTGGCGATGCCCATCGTGAGCAGCGACGCGACGAGCGTGTGCGTGCGGCCGAACCGGTCGCCGAAGTGGCCGAAGAGCACGGATCCGATGGGCCGTGCGAAGAACGCGACGCCGAACACGGCGAGCGACTGGAGCTGCGCGACCGCGGGGTCGTCGTTCGCGAAGAAGAGGGCTGGGAACACCAGCACGGCGGCCGTCGCGTAGACGTAGAAGTCGAAGAACTCGATGGACGTCCCGATGAGGCTCGCAATTACCAC > 345 CLUG_00420 NA hypothetical_protein XP_002619261.1 12 MKKKPLSINHHLHNMSQEDVTSGSTPINGSLLETEKKLEENLEHQMPEKSFKDYISISIFCLLVAFGGFVFGFDTGTISGFVNMPDFKKRFGQHKADGEHYLSNVRTGLIVSIFNVGCAVGGIFLSKIADVWGRRMGMMVAYGYLRRRYHCPNCISITLGTSTLLAVLYSGLAVGTISVVSPLFISEVSPKQIRGTLVCCFQLFITMGIFLGYCTTYGTKKYTDSKQWRVPLGLCFAWAIFLVVGMLSMPESPRYLIEKAKIDEARRSIARSNKLSEEDPAVHTEIQLIQAGIDREALAGKASWKELITGKPKIFRRVLMGVILQSLQQLTGNNYFFYYGTTIFKAVGYD Saccharomycetes Clavispora_lusitaniae_ATCC_42720 Clavispora_lusitaniae_ATCC_42720_(anamorph:_Candida_lusitaniae_ATCC_42720) XM_002619215 NA Butler,G.,_Rasmussen,M.D.,_Lin,M.F.,_Santos,M.A.,_Sakthikumar,S.,_Munro,C.A.,_Rheinbay,E.,_Grabherr,M.,_Forche,A.,_Reedy,J.L.,_Agrafioti,I.,_Arnaud,M.B.,_Bates,S.,_Brown,A.J.,_Brunke,S.,_Costanzo,M.C.,_Fitzpatrick,D.A.,_de_Groot,P.W.,_Harris,D.,_Hoyer,L.L.,_Hube,B.,_Klis,F.M.,_Kodira,C.,_Lennard,N.,_Logue,M.E.,_Martin,R.,_Neiman,A.M.,_Nikolaou,E.,_Quail,M.A.,_Quinn,J.,_Santos,M.C.,_Schmitzberger,F.F.,_Sherlock,G.,_Shah,P.,_Silverstein,K.A.,_Skrzypek,M.S.,_Soll,D.,_Staggs,R.,_Stansfield,I.,_Stumpf,M.P.,_Sudbery,P.E.,_Srikantha,T.,_Zeng,Q.,_Berman,J.,_Berriman,M.,_Heitman,J.,_Gow,N.A.,_Lorenz,M.C.,_Birren,B.W.,_Kellis,M._and_Cuomo,C.A. NA 0:1053 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003101578).COMPLETENESS:_incomplete_on_both_ends. NA 09-OCT-2009 Clavispora_lusitaniae_ATCC_42720_hypothetical_protein,_mRNA. NA Metschnikowiaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Clavispora_lusitaniae_C4XWU7_CLAL4.gb Clavispora 260949928 Nature_459_(7247),_657-662_(2009) fungi XM_002619215 NA NA budding_yeasts sac_fungi 19465905 1053 NA mRNA NA ATCC_42720 NA Clavispora_lusitaniae NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 306902 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Metschnikowiaceae,_Clavispora Evolution_of_pathogenicity_and_sexual_reproduction_in_eight_Candida_genomes NA XM_002619215.1 ATGAAAAAAAAACCATTATCCATCAATCATCACTTACATAACATGTCTCAAGAAGATGTTACTTCTGGCTCTACGCCAATAAACGGTTCTCTTTTGGAGACCGAGAAAAAATTAGAGGAGAACCTCGAACACCAAATGCCTGAAAAGAGCTTCAAGGACTACATTTCCATTTCCATTTTCTGCTTGTTGGTGGCCTTCGGTGGTTTCGTTTTCGGCTTTGACACTGGTACCATTTCTGGTTTTGTCAACATGCCTGATTTCAAGAAGAGATTCGGTCAACACAAGGCCGATGGTGAACACTACTTGTCTAACGTTAGAACCGGTTTGATTGTTTCCATTTTCAACGTTGGTTGTGCTGTCGGTGGTATTTTCCTTTCGAAAATTGCCGATGTCTGGGGTAGAAGAATGGGAATGATGGTGGCCTATGGTTATCTACGTCGTCGGTATCATTGTCCAAATTGCATCTCAATCACGCTTGGTACCAGTACTTTATTGGCCGTCTTATATTCTGGTCTTGCCGTGGGTACCATTTCTGTTGTCTCCCCACTTTTCATTTCTGAAGTTTCTCCAAAGCAAATTAGAGGTACTTTGGTCTGCTGCTTCCAATTGTTTATCACCATGGGTATCTTTTTGGGTTACTGTACCACTTACGGTACTAAGAAGTACACAGACTCCAAGCAATGGAGAGTTCCATTGGGTTTGTGTTTCGCATGGGCCATTTTCTTGGTTGTTGGTATGTTGAGTATGCCAGAATCTCCAAGATACTTGATTGAAAAGGCTAAAATCGATGAAGCTAGAAGATCTATTGCTAGATCCAACAAGCTTTCCGAAGAAGACCCTGCTGTCCACACTGAAATTCAACTTATTCAAGCTGGTATTGACAGAGAAGCTTTGGCTGGTAAGGCCTCTTGGAAGGAATTGATCACCGGTAAGCCAAAGATCTTCAGAAGAGTGCTCATGGGTGTGATTCTTCAATCCTTGCAACAATTGACTGGTAACAACTACTTTTTCTACTACGGTACCACTATTTTCAAGGCTGTTGGGTATGACTGA > 346 CPC735_070030 encoded_by_transcript_CPC735_070030A;_predicted_by_combiner major_facilitator_superfamily_protein XP_003071466.1 NA MSSDAPDGEQQAVGEGRRDTSLKANWRIFAITLYMGISLFEYGFDKGAIAGFQAMPGFLQVFGYQTESGKWDIHAGPQQMISSFMILGSVIGSISTGFIGAHICRRYSLMFGSLIVIVCIAIMAETTSMGALYFSRLLIGVGNGLLLNFTILYLQECTPPRFRGLCLSMVTCWIAIGTTIGMVINHRTNHIMSRKAYQIPLYVCYPAPIILILTLPFLPESPRWLLHHGKTEEALRSLRFFRKGAYDEVAVQQEFEEMKAIARREAEARKDWRLFFELFKGHNLRRTIIAVGVGTANAGVGAMFILAFGTYFFRVANVGDPFKWIIVTNCVGLAGLFTTWCIVTHIGRRRIIVAGCAICTIAMLLMAAVYTSPSVSKDGAGIALVIIVSIYVFGFNFGLEPYVYLVAGELPAQNLRGYTMGLSTATSFTFAWLSAFTTPYFINPGELNWGPKYGYIWFVSGLIVTAFVWYYLPEVRGRTLEEIDEMFRNNVPTRDFPKYVCVESQEAKERGLMNVFGEVKPDAEHVESASKN bitunicate_ascomycetes Coccidioides_posadasii_C735_delta_SOWgp Coccidioides_posadasii_C735_delta_SOWgp XM_003071420 NA Sharpton,T.J.,_Stajich,J.E.,_Rounsley,S.D.,_Gardner,M.J.,_Wortman,J.R.,_Jordar,V.S.,_Maiti,R.,_Kodira,C.D.,_Neafsey,D.E.,_Zeng,Q.,_Hung,C.Y.,_McMahan,C.,_Muszewska,A.,_Grynberg,M.,_Mandel,M.A.,_Kellner,E.M.,_Barker,B.M.,_Galgiani,J.N.,_Orbach,M.J.,_Kirkland,T.N.,_Cole,G.T.,_Henn,M.R.,_Birren,B.W._and_Taylor,J.W. NA 0:1599 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003316019).COMPLETENESS:_incomplete_on_both_ends. NA 17-AUG-2010 Coccidioides_posadasii_C735_delta_SOWgp_major_facilitator_superfamily_protein,_mRNA. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Coccidioides_posadasii_C5P0W3_COCP7.gb Coccidioides 303322948 Genome_Res._19_(10),_1722-1731_(2009) fungi XM_003071420 NA NA Onygenales sac_fungi 19717792 1599 NA mRNA NA C735_delta_SOWgp NA Coccidioides_posadasii NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 222929 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_mitosporic_Onygenales,_Coccidioides Comparative_genomic_analyses_of_the_human_fungal_pathogens_Coccidioides_and_their_relatives NA XM_003071420.1 ATGTCTTCCGACGCCCCTGATGGGGAGCAGCAGGCCGTAGGTGAAGGCCGTCGTGACACCAGCCTCAAAGCCAACTGGCGCATCTTCGCCATCACGCTGTACATGGGAATTTCTCTCTTTGAGTATGGCTTTGACAAGGGCGCCATCGCAGGTTTTCAAGCCATGCCCGGCTTCCTTCAGGTGTTTGGCTACCAAACTGAGTCGGGAAAATGGGATATCCACGCGGGTCCTCAGCAGATGATCTCCTCGTTCATGATCCTGGGCAGCGTCATTGGTTCTATCAGCACGGGCTTCATCGGCGCGCATATTTGCCGTCGCTACTCGCTCATGTTCGGCTCGCTTATTGTCATTGTCTGCATCGCCATCATGGCTGAGACCACCTCCATGGGAGCTCTCTATTTTTCCAGACTTTTAATCGGAGTGGGTAACGGCTTGCTGCTCAATTTTACGATCCTGTATCTACAGGAGTGCACGCCACCCCGCTTCCGTGGTCTCTGTCTTAGTATGGTGACCTGCTGGATTGCCATCGGAACGACTATTGGCATGGTGATTAACCACAGAACCAACCACATCATGAGCCGCAAAGCCTATCAGATTCCTCTCTATGTTTGCTACCCTGCGCCCATAATCCTCATTCTTACGCTGCCCTTTCTCCCCGAATCACCCCGCTGGCTGCTGCACCACGGCAAGACCGAGGAGGCGCTTCGCAGCTTGCGTTTCTTCCGCAAGGGGGCCTACGATGAGGTCGCGGTCCAGCAGGAATTCGAGGAGATGAAGGCGATTGCGAGACGCGAGGCCGAGGCCCGGAAGGACTGGCGTTTGTTCTTCGAGCTGTTCAAGGGTCATAATCTGCGGAGAACAATTATCGCTGTTGGTGTTGGCACTGCAAACGCTGGTGTGGGCGCAATGTTTATCCTTGCATTTGGAACGTACTTTTTCCGGGTGGCTAATGTCGGTGACCCATTCAAATGGATCATCGTGACCAACTGTGTTGGCCTCGCTGGTCTCTTCACCACTTGGTGCATTGTAACCCACATCGGTCGCCGGCGCATTATCGTCGCAGGCTGCGCAATTTGCACAATCGCTATGCTCCTCATGGCTGCCGTGTACACTTCCCCAAGCGTCTCCAAGGATGGCGCGGGTATCGCACTGGTCATAATCGTGTCCATTTACGTCTTTGGCTTCAATTTCGGCCTTGAACCTTACGTGTACCTCGTTGCTGGCGAGCTCCCCGCGCAAAACCTCCGCGGTTATACTATGGGCTTGTCGACTGCCACAAGCTTTACGTTTGCATGGTTGAGCGCCTTTACCACGCCCTACTTCATCAATCCCGGAGAACTGAACTGGGGTCCCAAGTACGGATATATCTGGTTCGTTAGCGGGCTCATCGTCACCGCGTTCGTGTGGTATTATCTACCTGAGGTGAGAGGCCGCACTCTCGAGGAGATCGATGAGATGTTCAGGAACAATGTGCCTACGAGGGATTTCCCCAAGTATGTGTGCGTGGAAAGCCAGGAGGCAAAGGAACGCGGCCTGATGAACGTTTTCGGAGAGGTCAAGCCCGACGCAGAGCACGTTGAGTCTGCTTCGAAGAACTAG > 347 CPC735_025400 encoded_by_transcript_CPC735_025400A;_predicted_by_combiner Sugar_transporter_family_protein XP_003069349.1 NA MTDILPLLQKGALVAQNPADFENIPELDESDREALRNEVTHRWRHPWALYYTIGLNSIAAAIQGWDQTGSNGANLSFPVEFNIPDSGCSDEALCDRNAWIVGFVNSIPYISIALFAGWLSDPINDWIGRRGTIFIAAIFSLLAPIGSAVTQNWPQLVVCRIMLGIGMGLKEVTVPVFSAENTPANVRGGLVMSWQVWTAFGIFLGTCANLAVVNVGAITWRLQLGSAFIPAVPLVLGIYFCPESPRWLLKKGKYAQAYASLLRLRNTPLQAARDLYYVHAQLVHEEVVLEESGLSKKNNMLTRFIELFTIPRIRRATQASGIVMIAQQMCGINIIAFYSASIFEQAGASNIEALLASFGYGLINFLFAWPAVWTIDTFGRRGLLLFTFPQMFWTLLAAGMCFFIPESSKAHLGLIAFFIYLFAAFYSPGEGPVPFTYSAEVFPLSHREIGMSWAVATNNFWASVLALTFKRLIRAFTPPGAFGFYAGLNIVALILIFLFLPETKQRTLEELDYVFAVPTRTHAKYQLTKVLPWWFKRYILMRKHAVCPELYHLDAPGHVNQRREKHAGVSKA bitunicate_ascomycetes Coccidioides_posadasii_C735_delta_SOWgp Coccidioides_posadasii_C735_delta_SOWgp XM_003069303 1..1719 Sharpton,T.J.,_Stajich,J.E.,_Rounsley,S.D.,_Gardner,M.J.,_Wortman,J.R.,_Jordar,V.S.,_Maiti,R.,_Kodira,C.D.,_Neafsey,D.E.,_Zeng,Q.,_Hung,C.Y.,_McMahan,C.,_Muszewska,A.,_Grynberg,M.,_Mandel,M.A.,_Kellner,E.M.,_Barker,B.M.,_Galgiani,J.N.,_Orbach,M.J.,_Kirkland,T.N.,_Cole,G.T.,_Henn,M.R.,_Birren,B.W._and_Taylor,J.W. NA 0:1719 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003316003).COMPLETENESS:_incomplete_on_the_5_end. NA 17-AUG-2010 Coccidioides_posadasii_C735_delta_SOWgp_Sugar_transporter_family_protein,_mRNA. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Coccidioides_posadasii_C5P704_COCP7.gb Coccidioides 303318698 Genome_Res._19_(10),_1722-1731_(2009) fungi XM_003069303 NA NA Onygenales sac_fungi 19717792 1719 NA mRNA NA C735_delta_SOWgp NA Coccidioides_posadasii NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 222929 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_mitosporic_Onygenales,_Coccidioides Comparative_genomic_analyses_of_the_human_fungal_pathogens_Coccidioides_and_their_relatives NA XM_003069303.1 ATGACCGATATCCTGCCACTCCTCCAAAAGGGAGCATTGGTAGCCCAAAATCCGGCCGACTTCGAGAACATCCCCGAGCTTGATGAGTCCGATCGGGAGGCTCTGCGCAATGAAGTGACCCATCGCTGGAGACACCCATGGGCTCTGTACTACACCATCGGCCTTAACTCCATCGCAGCAGCTATTCAAGGTTGGGATCAGACAGGCTCCAACGGTGCCAATCTCTCCTTCCCGGTTGAATTTAATATCCCCGACTCAGGATGTTCCGATGAGGCACTCTGCGATCGGAATGCATGGATTGTGGGATTTGTCAACTCGATTCCCTACATTTCTATCGCTCTGTTCGCTGGCTGGCTTTCGGATCCCATCAATGACTGGATCGGCCGTCGAGGCACTATCTTTATCGCCGCGATTTTCAGTCTTCTCGCTCCAATCGGATCTGCTGTCACGCAGAATTGGCCGCAACTTGTTGTCTGCCGTATTATGCTGGGGATCGGTATGGGTCTGAAAGAGGTCACTGTTCCAGTCTTCTCCGCAGAGAATACGCCTGCCAATGTTCGTGGTGGTCTTGTCATGTCGTGGCAAGTATGGACGGCGTTCGGAATTTTCCTAGGAACTTGCGCAAACCTGGCTGTTGTCAACGTTGGAGCAATCACCTGGCGACTGCAGTTGGGCTCTGCGTTCATTCCAGCTGTGCCTCTCGTGCTAGGTATCTATTTCTGCCCAGAATCACCTCGTTGGCTCCTCAAGAAAGGCAAGTATGCACAAGCATACGCGTCCCTTCTTCGACTCCGTAATACCCCCCTGCAAGCCGCCAGAGATCTTTATTATGTTCATGCTCAGCTCGTTCATGAAGAAGTCGTTCTTGAAGAATCTGGCCTTTCAAAGAAAAACAATATGCTCACGCGGTTCATTGAACTGTTTACTATCCCCCGCATCCGACGTGCAACTCAGGCTTCGGGTATTGTCATGATCGCCCAACAAATGTGTGGAATCAATATCATCGCTTTTTATTCCGCTTCCATTTTTGAACAAGCCGGGGCTTCCAACATCGAAGCTCTTCTTGCTTCGTTCGGATATGGCCTGATAAATTTCCTCTTCGCCTGGCCGGCAGTGTGGACTATCGACACATTTGGCCGTCGAGGACTCCTCCTCTTCACCTTCCCTCAAATGTTCTGGACACTACTGGCTGCCGGAATGTGTTTCTTCATCCCAGAAAGCAGCAAGGCCCATCTCGGCCTCATCGCCTTCTTCATTTACCTCTTCGCGGCCTTCTACTCCCCGGGTGAGGGTCCAGTTCCCTTCACCTACTCTGCTGAAGTCTTCCCGCTGTCCCATCGTGAAATCGGTATGTCTTGGGCTGTGGCAACGAATAACTTTTGGGCGTCCGTGCTCGCACTCACCTTTAAACGTTTGATCCGAGCGTTCACACCGCCTGGTGCATTCGGTTTCTACGCTGGTCTGAACATTGTAGCGCTAATCCTCATTTTCCTCTTCCTGCCTGAGACGAAGCAGCGTACCCTCGAAGAACTTGATTACGTCTTTGCCGTGCCGACGCGAACCCACGCAAAGTACCAGCTCACCAAGGTGCTTCCATGGTGGTTCAAGAGGTATATCTTGATGAGAAAGCACGCTGTCTGTCCTGAGTTGTACCACTTGGATGCGCCTGGACATGTGAACCAGCGTAGAGAGAAGCATGCAGGTGTATCCAAGGCCTGA > 348 CPC735_029080 encoded_by_transcript_CPC735_029080A;_predicted_by_combiner Sugar_transporter_family_protein XP_003069717.1 NA MAGTSDVSRVEAPVTLKAYLMCAFAAFGGIFFGYDSGYINGVLGMDFFIEEFTGLRKSDFSPDEVKDKFVVPSWQKSLITSILSAGTFFGAIIAGDLADFFGRRTTIISGCAVFIVGVALQTASTTVALLVVGRLVAGFGVGFVSAIIILYMSEIAPRRVRGAIVSGYQFCITVGLLLASCVDYGTQERTDSGSYRIPIALQMLWALILAVGLFLLPESPRYYVKKGDVERAKAALASVRGQPLDSEFIQQELAEIVANHEYELQVVPQGSYWASWLNCFRGSLFDPASNLRRTILGTSLQMMQQWTGVNFIFYFGTTFFQSLGTISNPFLIGLITTLVNVCSTPISFWAIERIGRRPLLIWGACGMFVCEFIVAIVGVTVGERQDAVRAMIAFICIYIFFFASTWGPGAWVVIGEIFPLPIRARGVGLATASNWLWNCIIAVITPYLVYSDKANLGPKVFFLWGSLCVMCFIYAYLLVPETKGLTLEQVDKMLEETTPRTSAKWKPHTTFASEMGLTEKATLEETVAIEVSPDHKETV bitunicate_ascomycetes Coccidioides_posadasii_C735_delta_SOWgp Coccidioides_posadasii_C735_delta_SOWgp XM_003069671 432..2051 Sharpton,T.J.,_Stajich,J.E.,_Rounsley,S.D.,_Gardner,M.J.,_Wortman,J.R.,_Jordar,V.S.,_Maiti,R.,_Kodira,C.D.,_Neafsey,D.E.,_Zeng,Q.,_Hung,C.Y.,_McMahan,C.,_Muszewska,A.,_Grynberg,M.,_Mandel,M.A.,_Kellner,E.M.,_Barker,B.M.,_Galgiani,J.N.,_Orbach,M.J.,_Kirkland,T.N.,_Cole,G.T.,_Henn,M.R.,_Birren,B.W._and_Taylor,J.W. NA 0:1620 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003316003). NA 17-AUG-2010 Coccidioides_posadasii_C735_delta_SOWgp_Sugar_transporter_family_protein,_mRNA. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Coccidioides_posadasii_C5P822_COCP7.gb Coccidioides 303319434 Genome_Res._19_(10),_1722-1731_(2009) fungi XM_003069671 NA NA Onygenales sac_fungi 19717792 1620 NA mRNA NA C735_delta_SOWgp NA Coccidioides_posadasii NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 222929 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_mitosporic_Onygenales,_Coccidioides Comparative_genomic_analyses_of_the_human_fungal_pathogens_Coccidioides_and_their_relatives NA XM_003069671.1 ATGGCTGGAACCTCCGACGTGTCGCGTGTCGAGGCCCCGGTGACCCTGAAGGCGTATCTGATGTGCGCCTTCGCGGCCTTCGGTGGCATCTTCTTTGGCTACGATTCCGGCTACATCAACGGCGTGTTGGGCATGGACTTCTTCATCGAGGAGTTCACCGGCCTGCGCAAGTCCGACTTCTCCCCCGACGAGGTCAAGGACAAGTTCGTCGTCCCGTCTTGGCAGAAGTCCCTCATCACCTCCATCCTCTCCGCCGGAACCTTCTTCGGCGCCATCATCGCCGGTGACCTCGCCGACTTCTTCGGCCGCAGGACCACCATCATCAGCGGATGCGCCGTCTTCATCGTCGGCGTCGCTCTCCAGACCGCATCCACCACCGTCGCCCTCCTTGTCGTCGGCCGCCTGGTCGCCGGCTTCGGTGTCGGTTTTGTCTCCGCCATCATCATCCTCTACATGTCCGAGATCGCCCCCCGAAGGGTGCGCGGCGCCATCGTCTCCGGCTACCAGTTCTGCATCACCGTCGGCCTGCTCTTGGCCTCCTGCGTCGACTACGGAACCCAGGAGAGAACCGATTCCGGCTCCTACCGCATCCCGATCGCCCTGCAGATGCTCTGGGCTCTCATCCTCGCCGTCGGCCTCTTCTTGCTCCCGGAGTCGCCCCGTTACTACGTCAAGAAAGGCGACGTCGAACGTGCCAAGGCCGCCCTCGCCTCCGTCCGTGGTCAGCCGCTCGATTCCGAATTTATCCAGCAGGAGCTTGCCGAGATCGTCGCCAACCACGAGTACGAGCTGCAGGTCGTCCCCCAGGGCAGCTATTGGGCATCTTGGCTCAACTGCTTCCGTGGCTCGCTCTTCGATCCCGCCAGCAACCTTCGTCGCACCATCCTCGGTACCTCTCTCCAGATGATGCAGCAATGGACCGGTGTCAACTTCATTTTCTACTTCGGCACCACCTTCTTCCAGTCCCTCGGCACCATCAGCAACCCGTTCTTGATCGGCCTCATCACGACCTTGGTCAATGTCTGCTCTACCCCAATCTCCTTCTGGGCAATCGAGAGGATCGGCCGTCGCCCCTTGCTCATCTGGGGTGCTTGTGGCATGTTCGTCTGTGAATTCATCGTCGCCATCGTGGGTGTCACGGTTGGTGAAAGGCAGGATGCCGTCAGGGCCATGATCGCATTCATCTGCATCTACATTTTCTTCTTTGCCAGCACGTGGGGTCCTGGCGCCTGGGTTGTCATTGGCGAGATCTTCCCGCTCCCTATCCGTGCCAGAGGCGTTGGCCTTGCGACCGCATCCAATTGGCTCTGGAACTGCATCATCGCAGTCATCACCCCGTACCTCGTCTATTCCGACAAAGCCAACTTGGGTCCCAAGGTCTTCTTCCTCTGGGGCTCTCTCTGCGTCATGTGTTTCATCTACGCATACCTCCTCGTCCCTGAAACAAAGGGTCTCACTCTCGAACAAGTGGATAAGATGCTCGAAGAGACTACCCCTCGTACTTCAGCGAAATGGAAGCCGCATACAACATTTGCTTCGGAGATGGGGCTTACGGAGAAGGCCACCCTTGAAGAAACTGTTGCCATCGAAGTTAGTCCAGATCACAAAGAGACGGTTTAA > 349 CPC735_002120 encoded_by_transcript_CPC735_002120A Sugar_transporter_family_protein XP_003068190.1 NA MDDDNANNPDAPLLSENRTSPRSWSQSRTLLGGEGAHAGAKAATEDLIPNGSGTWFIWALTLSAGLSGLLFGYDTGVISSTLVCIKTDLSHRELTTLDKSLITSSTSLFALISSPIAGALGDRLGRKPVILIADALFVVGALWQAATSDVSGMIVGRSLVGLAVGAASLITPLYVKMRSSAGEQRLDFSFLLVQAVAEECSTSTTLLNGVLIRSCTSKSRYIAELSPSEIRGRLVTVLALFITGGQVTAYVTGWLLSTAPSGWRWMVGLGALPALIQLFILIFLPETPRWLVKAGKDNEARLVLGKVYGKSDIIRQAVDRIIRDIENDINEEIQRLAPQQDATSEASQCLNSMLQSWSSLFRIPSNRRALIIACMLQGFQQLCGFNSLMYFSATIFNLLSFSSPTLTSLSVAVTNFIFTLLAFSLIDRIGRRRILLSSIPIMALSLLFCAAVFPSMDIFPTPGKGVAAGVDSNDYAAAPQSGLKPVLILISLTMYTASYASGLGNVPWQQSELFPLQVRSLGSALATATNWGSNFLVGLTFLPLMEFISPGWTFLIYAVVCIVGWLAVWAIYPEMSGLGLEDVKSLLVDGWGVSESLERFVKRRGNVVQT bitunicate_ascomycetes Coccidioides_posadasii_C735_delta_SOWgp Coccidioides_posadasii_C735_delta_SOWgp XM_003068144 NA Sharpton,T.J.,_Stajich,J.E.,_Rounsley,S.D.,_Gardner,M.J.,_Wortman,J.R.,_Jordar,V.S.,_Maiti,R.,_Kodira,C.D.,_Neafsey,D.E.,_Zeng,Q.,_Hung,C.Y.,_McMahan,C.,_Muszewska,A.,_Grynberg,M.,_Mandel,M.A.,_Kellner,E.M.,_Barker,B.M.,_Galgiani,J.N.,_Orbach,M.J.,_Kirkland,T.N.,_Cole,G.T.,_Henn,M.R.,_Birren,B.W._and_Taylor,J.W. NA 0:1833 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315998).COMPLETENESS:_incomplete_on_both_ends. NA 17-AUG-2010 Coccidioides_posadasii_C735_delta_SOWgp_Sugar_transporter_family_protein,_mRNA. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Coccidioides_posadasii_C5P8I3_COCP7.gb Coccidioides 303316375 Genome_Res._19_(10),_1722-1731_(2009) fungi XM_003068144 NA NA Onygenales sac_fungi 19717792 1833 NA mRNA NA C735_delta_SOWgp NA Coccidioides_posadasii NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 222929 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_mitosporic_Onygenales,_Coccidioides Comparative_genomic_analyses_of_the_human_fungal_pathogens_Coccidioides_and_their_relatives NA XM_003068144.1 ATGGACGACGATAACGCCAACAACCCCGACGCTCCTCTACTCTCCGAGAACCGAACAAGCCCTCGATCGTGGTCCCAGTCGAGGACACTCTTAGGAGGAGAAGGCGCTCACGCAGGTGCTAAAGCTGCTACGGAGGACTTGATTCCTAATGGCTCGGGGACGTGGTTTATATGGGCACTTACACTATCCGCAGGCCTCAGTGGACTGCTGTTTGGATATGATACCGGCGTCATTTCATCGACCTTAGTATGCATCAAGACGGATCTGTCCCATCGAGAGCTGACAACCTTGGATAAGAGCTTAATCACATCATCCACAAGTCTATTCGCGCTTATCTCGAGTCCCATTGCGGGAGCGTTAGGTGACAGGCTTGGAAGAAAACCCGTCATCTTGATCGCAGACGCTCTATTCGTCGTCGGCGCTCTGTGGCAAGCGGCCACCTCAGATGTCAGTGGCATGATTGTCGGTCGGAGTTTGGTGGGGTTGGCCGTTGGAGCGGCAAGTCTGATTACGCCCTTGTACGTAAAGATGCGCTCAAGTGCGGGCGAGCAACGTCTTGATTTCTCCTTTCTGCTGGTTCAAGCCGTTGCGGAAGAGTGCAGCACATCTACGACGTTATTGAATGGCGTGCTGATTCGATCCTGCACCTCTAAATCTAGGTACATTGCTGAACTCTCCCCGTCAGAAATTCGGGGCAGATTAGTGACTGTTCTCGCGCTTTTCATCACCGGTGGCCAGGTAACTGCCTATGTAACCGGGTGGCTACTATCTACAGCTCCATCAGGCTGGCGCTGGATGGTTGGGCTCGGCGCCCTCCCAGCTTTGATTCAACTTTTCATCCTTATATTCCTCCCAGAGACACCACGGTGGCTAGTGAAAGCCGGCAAGGATAATGAAGCCCGTCTGGTATTAGGCAAAGTTTACGGCAAGTCTGATATAATCAGACAGGCGGTCGATCGGATCATTCGAGATATCGAGAATGATATTAATGAAGAAATCCAAAGGTTGGCCCCACAGCAAGACGCGACGTCCGAGGCCTCACAATGCCTAAATTCTATGCTCCAATCCTGGAGCAGCCTATTCCGAATTCCCTCAAATCGCCGTGCCCTGATTATAGCTTGTATGCTACAGGGTTTTCAACAACTCTGTGGTTTCAATTCGCTGATGTATTTTTCGGCAACCATTTTCAATCTCCTTTCTTTTTCCTCGCCAACGTTAACATCGCTATCAGTGGCTGTGACGAATTTCATCTTTACCTTATTAGCTTTCTCCCTCATCGATCGTATCGGCCGAAGACGAATTCTTCTCTCATCTATTCCAATCATGGCCCTCTCCCTTCTCTTCTGTGCAGCCGTATTCCCTTCTATGGATATCTTTCCAACTCCGGGTAAAGGGGTGGCTGCCGGAGTCGACAGCAACGACTACGCAGCTGCTCCCCAATCGGGCCTTAAACCCGTACTCATTCTTATATCCCTGACAATGTATACCGCTTCCTATGCCTCTGGTTTGGGGAACGTTCCCTGGCAACAATCCGAACTGTTTCCCCTTCAGGTCCGATCCCTCGGTTCTGCACTCGCAACCGCGACGAACTGGGGATCAAATTTCCTCGTTGGGCTTACATTCCTGCCACTAATGGAGTTCATTTCACCAGGTTGGACATTTTTGATTTATGCAGTTGTCTGCATTGTGGGCTGGCTTGCCGTGTGGGCTATTTATCCTGAGATGAGTGGGCTTGGATTGGAGGATGTTAAAAGTCTGTTAGTAGATGGATGGGGCGTTAGTGAAAGCCTAGAGAGGTTTGTGAAAAGGAGAGGAAATGTTGTTCAGACATAA > 350 CPC735_054390 encoded_by_transcript_CPC735_054390A Sugar_transporter_family_protein XP_003066214.1 NA MRKADHDVEGRKVTAEIGGEAQIATVAETRMDFRTAIKLYPKAAAWSLFFSLGVIMTGFDPQIMGNLYGVPKFQEDFGMGSPVGQVVGALAASYPMEWFGRKSTFLFYARSLPVLLVGELLGGLILGCYAVIAPAYASEVCPVALRGVLAAYINLCFVIGQFIANGIAAATHGLDSHWAYSIPFSMQWIWPAIILLGIFFAPESPWWLVRKGRLDNAEMSLRRLASPRVDVKATLAMIIETDRLEQEMEAGTTYRDCFRKINLRRTEIAIGVYTIQVFSGIYLIGFSTYFFTLAGLSTDNAFNMGIGFLGVGFVGTCLSWVLLSYFGRRTIYGNGLGVMAIILFSIGILDCTPNYLDRPGVIWAQSSMMLVWNFTYNISVGPICFVILCECSATKVRSKTIAIATAIQAIFGIVMTVAIPHMINPDAGNMRGKLGFFFGGLSIICLLWTWFRVPETKGRTYEELDIMFERNVPTHQFKDYKVI bitunicate_ascomycetes Coccidioides_posadasii_C735_delta_SOWgp Coccidioides_posadasii_C735_delta_SOWgp XM_003066168 NA Sharpton,T.J.,_Stajich,J.E.,_Rounsley,S.D.,_Gardner,M.J.,_Wortman,J.R.,_Jordar,V.S.,_Maiti,R.,_Kodira,C.D.,_Neafsey,D.E.,_Zeng,Q.,_Hung,C.Y.,_McMahan,C.,_Muszewska,A.,_Grynberg,M.,_Mandel,M.A.,_Kellner,E.M.,_Barker,B.M.,_Galgiani,J.N.,_Orbach,M.J.,_Kirkland,T.N.,_Cole,G.T.,_Henn,M.R.,_Birren,B.W._and_Taylor,J.W. NA 0:1452 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315979).COMPLETENESS:_incomplete_on_both_ends. NA 17-AUG-2010 Coccidioides_posadasii_C735_delta_SOWgp_Sugar_transporter_family_protein,_mRNA. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Coccidioides_posadasii_C5PHR6_COCP7.gb Coccidioides 303312404 Genome_Res._19_(10),_1722-1731_(2009) fungi XM_003066168 NA NA Onygenales sac_fungi 19717792 1452 NA mRNA NA C735_delta_SOWgp NA Coccidioides_posadasii NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 222929 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_mitosporic_Onygenales,_Coccidioides Comparative_genomic_analyses_of_the_human_fungal_pathogens_Coccidioides_and_their_relatives NA XM_003066168.1 ATGAGGAAAGCAGACCACGATGTCGAGGGCCGCAAGGTCACCGCCGAAATTGGCGGGGAGGCACAAATTGCTACGGTTGCAGAGACAAGGATGGACTTTAGAACCGCTATCAAGCTTTACCCGAAAGCAGCTGCATGGTCGTTGTTCTTTTCCCTGGGAGTGATAATGACTGGCTTCGATCCCCAGATCATGGGTAACTTATATGGAGTCCCAAAATTTCAGGAGGACTTTGGCATGGGAAGCCCGGTTGGTCAAGTCGTGGGTGCTTTAGCGGCAAGTTATCCAATGGAGTGGTTTGGGCGGAAGTCGACGTTCTTGTTTTATGCTCGTTCTCTCCCTGTGTTGCTGGTGGGTGAGCTGCTCGGTGGTCTCATCCTCGGCTGTTATGCAGTCATTGCTCCAGCATACGCTTCTGAAGTTTGCCCGGTCGCTTTACGAGGTGTGTTGGCCGCGTACATAAACTTATGTTTTGTCATCGGCCAGTTTATCGCGAATGGCATAGCTGCCGCCACCCATGGACTAGATTCGCATTGGGCCTATAGTATTCCGTTCTCCATGCAGTGGATTTGGCCAGCGATTATCCTTTTGGGTATTTTCTTCGCTCCTGAAAGTCCCTGGTGGCTGGTGAGGAAAGGAAGACTTGACAACGCTGAGATGTCACTTCGGCGGCTAGCATCCCCAAGGGTGGACGTCAAGGCGACCTTGGCAATGATCATTGAAACTGATCGGCTGGAGCAGGAGATGGAGGCAGGCACTACATACCGGGATTGCTTTAGGAAGATCAATCTTAGGCGGACTGAAATTGCTATCGGCGTTTATACTATCCAAGTCTTTAGCGGAATATATCTCATCGGTTTCTCGACTTATTTCTTCACTTTGGCTGGCCTGTCAACAGATAATGCATTTAACATGGGCATCGGGTTCCTTGGTGTTGGATTCGTAGGGACATGTCTATCGTGGGTGCTGCTCTCATATTTTGGTCGAAGAACAATCTATGGCAACGGCTTGGGGGTAATGGCTATTATTCTGTTTAGCATTGGCATTCTGGACTGTACCCCCAACTACCTTGATCGACCTGGCGTGATTTGGGCGCAATCGTCGATGATGCTGGTCTGGAATTTCACTTATAATATATCCGTCGGCCCCATCTGCTTTGTGATCCTATGTGAATGCTCGGCGACGAAGGTTCGTTCCAAAACCATTGCCATCGCTACGGCTATCCAGGCGATTTTTGGAATTGTCATGACTGTTGCCATTCCACATATGATCAATCCGGACGCGGGAAATATGCGAGGGAAGTTGGGATTTTTCTTTGGAGGTTTATCTATAATTTGCCTCCTGTGGACATGGTTTAGGGTACCAGAAACGAAAGGTAGAACATACGAAGAGCTTGACATTATGTTTGAGCGCAACGTACCAACTCACCAATTTAAGGATTATAAAGTCATATAA > 351 CPC735_022490 encoded_by_transcript_CPC735_022490A;_predicted_by_combiner Sugar_transporter_family_protein XP_003065095.1 NA MEKLRDYIHFGRNRASSELEKDVSAQHAEAQAGQFVETPIRWVTLHSVIMGMFVSMGGFLFGYDTGQISGILAMEDFLKRFGEKDATGDGYHFSNVRSGLIVAILSVGTLMGALIAGPIADRLGRKWSISSWCIVLAVGIIVQVASEAPDWWQVVIGRWIAGLGVGALSLLVPLYQGESAPKHIRGAMISTYQLFITLGIFVANCINYGTEGIDNTGSWRIPMAVTFLWLLILGFGMMFFPESPRYAYRQGKIAEAKRTMMKFYGIPENHKRLHEEFVEIQQKYEEDMAAKDESWWQMFRAPRMRYRLLLGIILQALQQLTGANYFFYYGTVIFKGAGVENSYVTQMILGAVNFGSTFLGLYNIEHFGRRKSLIVGAGWMFICFLIFASVGHFALDLERPESTPKAGTAMVVFACLFILGFASTWGPMIWAIVAELYPSRYRARSMALATASNWLWNFLIGFFTPFITEKIDFRYGYVFAGCLFLAAATVYFGVIEGSGRTLEELDTMYILRVKPWQSAKYELPPVEELPLENRTAGTSHASSHEEADLNRPTSEQKNYD bitunicate_ascomycetes Coccidioides_posadasii_C735_delta_SOWgp Coccidioides_posadasii_C735_delta_SOWgp XM_003065049 NA Sharpton,T.J.,_Stajich,J.E.,_Rounsley,S.D.,_Gardner,M.J.,_Wortman,J.R.,_Jordar,V.S.,_Maiti,R.,_Kodira,C.D.,_Neafsey,D.E.,_Zeng,Q.,_Hung,C.Y.,_McMahan,C.,_Muszewska,A.,_Grynberg,M.,_Mandel,M.A.,_Kellner,E.M.,_Barker,B.M.,_Galgiani,J.N.,_Orbach,M.J.,_Kirkland,T.N.,_Cole,G.T.,_Henn,M.R.,_Birren,B.W._and_Taylor,J.W. NA 0:1683 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315976).COMPLETENESS:_incomplete_on_both_ends. NA 17-AUG-2010 Coccidioides_posadasii_C735_delta_SOWgp_Sugar_transporter_family_protein,_mRNA. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Coccidioides_posadasii_C5PJQ1_COCP7.gb Coccidioides 303310163 Genome_Res._19_(10),_1722-1731_(2009) fungi XM_003065049 NA NA Onygenales sac_fungi 19717792 1683 NA mRNA NA C735_delta_SOWgp NA Coccidioides_posadasii NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 222929 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_mitosporic_Onygenales,_Coccidioides Comparative_genomic_analyses_of_the_human_fungal_pathogens_Coccidioides_and_their_relatives NA XM_003065049.1 ATGGAAAAACTTAGAGATTATATCCATTTTGGGCGAAATAGAGCCTCATCTGAATTGGAAAAGGATGTCTCCGCTCAACATGCAGAGGCCCAAGCCGGCCAGTTCGTGGAAACTCCAATCCGATGGGTGACATTGCACTCAGTTATCATGGGGATGTTCGTCTCCATGGGTGGATTTCTCTTTGGCTATGATACCGGCCAGATTTCTGGAATCCTGGCCATGGAGGATTTCTTGAAAAGGTTTGGTGAGAAAGACGCCACCGGGGATGGCTATCATTTCAGCAACGTTAGGTCTGGTTTGATCGTGGCAATACTTTCTGTCGGTACTTTGATGGGCGCGTTGATTGCTGGACCCATTGCAGACCGACTGGGGCGGAAGTGGTCAATATCTTCATGGTGTATTGTGCTCGCTGTCGGTATCATTGTCCAAGTGGCTTCAGAAGCACCAGACTGGTGGCAAGTTGTTATTGGTCGTTGGATCGCTGGTCTTGGAGTCGGTGCTCTCTCGCTCCTGGTACCTCTATACCAGGGTGAGAGTGCCCCTAAGCACATCAGGGGTGCTATGATCAGTACCTATCAACTCTTTATTACCTTAGGTATATTCGTCGCAAATTGTATCAACTACGGAACTGAGGGAATTGACAACACTGGCTCGTGGAGAATTCCGATGGCGGTCACTTTCCTTTGGCTTCTCATTCTAGGGTTTGGAATGATGTTCTTCCCCGAGTCCCCACGGTATGCTTACCGCCAAGGCAAGATCGCGGAAGCAAAGAGAACAATGATGAAGTTCTACGGAATTCCTGAAAATCATAAAAGGCTACATGAAGAATTCGTCGAGATCCAGCAAAAGTACGAAGAGGATATGGCTGCCAAAGATGAAAGTTGGTGGCAAATGTTCCGTGCGCCTAGAATGAGATATAGGCTCCTGCTTGGCATCATCCTTCAAGCACTTCAACAGCTGACCGGTGCTAATTACTTCTTCTACTATGGCACCGTTATCTTTAAAGGCGCTGGCGTCGAGAACAGCTATGTAACTCAAATGATTCTCGGAGCTGTCAATTTTGGCAGTACATTTCTCGGTTTATACAACATTGAACACTTTGGCCGCCGCAAATCCTTGATCGTGGGTGCGGGATGGATGTTCATTTGCTTCCTTATCTTTGCATCTGTTGGCCACTTCGCTCTGGATTTGGAGCGCCCCGAGAGCACTCCCAAGGCAGGCACTGCCATGGTTGTCTTCGCCTGTCTGTTCATTCTTGGATTCGCAAGTACATGGGGCCCCATGATCTGGGCCATCGTCGCAGAATTATACCCATCTCGCTACCGTGCACGATCAATGGCTCTCGCCACCGCGTCTAACTGGCTCTGGAACTTCCTCATCGGCTTCTTTACCCCCTTTATCACCGAGAAGATTGATTTCAGATACGGCTATGTTTTCGCCGGATGTCTGTTTCTCGCAGCGGCCACTGTGTATTTCGGGGTTATTGAAGGCTCGGGCCGCACCTTGGAAGAATTGGATACGATGTATATTCTCAGGGTCAAACCATGGCAGAGTGCCAAATATGAACTCCCGCCGGTTGAGGAGTTGCCTCTCGAAAATAGAACGGCCGGCACTTCTCACGCCTCGTCTCATGAAGAGGCTGATCTGAACCGCCCAACGTCGGAACAGAAGAATTATGATTAA > 352 NA NA monosaccharide_transporter_1 ABY48860.1 NA MPPRIKESEHGVPTYWGQSGRMLQVLITIVAVTDFLLFGYDQGVMSGIISAPAFQSAFPQVKGDSTYEGFVVSIYAVGCFLGACFIFIFGDKLGRRKSIFLGAFVMVIGVIIQIACVPPNGGATAQFIVGRCITGVGNGINTSTIPTYQAECCKAKNRGKVICIEGSMVAIGTLIAYWIDYGCLYGPDDFTWRFPIAFQCVFAFVVIIMMTSLPESPRWLLNHHREDEAATVLAGLNGVPRDDPEVLIQMQIIRDAVNASGGGGKVPTKALLTGGKTQHFRRALLGASGQFMQQLSGCNAVIYYFPILCQDALGTSHNLALLLGGVNMVVYAAFASTSFFFVERVGRRKLYLIGTVGQMLAMVLTFACLIDKTVSAPGAAVGLFVYIAFFGVTWLPLPWLYPAEITLLKTRQKANAFSTINNWLWNFFIVMITPVLITSIGWGTYLFFAALNASFIPIIYFFYPETAGRSLEEIDLIFAKGFTEKISYVHAAKQLPKMDEAQIAEAVRQYDISDSDVENRSAAGSLKEKRRQDEELMPQTSGQA bitunicate_ascomycetes Cochliobolus_heterostrophus Cochliobolus_heterostrophus_(anamorph:_Bipolaris_maydis) EU202731 391..842 Igbaria,A.,_Lev,S.,_Rose,M.S.,_Lee,B.N.,_Hadar,R._and_Horwitz,B.A. NA 0:452 NA NA 01-JAN-2008 Cochliobolus_heterostrophus_monosaccharide_transporter_1_(MST1)_gene,_complete_cds. NA Pyrenophoraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cochliobolus_heterostrophus_A9YFM4_COCHE.gb Cochliobolus 163931306 Unpublished fungi EU202731 monosaccharide_transporter_1 NA Pleosporales sac_fungi NA 452 NA genomic_DNA NA NA NA Helminthosporium_maydis NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 5016 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Pleosporaceae,_Cochliobolus The_MAP_kinase_signaling_network_of_Cochliobolus_heterostrophus:_modulation_of_gene_expression_and_role_in_virulence_and_stress NA EU202731.1 ATGCCTCCACGTATCAAAGAGAGCGAACATGGTGTGCCCACCTACTGGGGCCAGTCCGGCCGCATGCTTCAGGTCCTCATCACCATTGTTGCCGTAACGGACTTTCTGCTCTTCGGTTATGATCAGGGTGTCATGAGTGGTATCATCTCCGCGCCGGCCTTTCAATCCGCCTTCCCTCAGGTCAAGGGTGACTCTACCTACGAAGGGTTTGTCGTCTCCATCTACGCTGTCGGTTGTTTCCTTGGTGCTTGCTTCATCTTCATCTTTGGAGACAAGCTCGGTCGCCGCAAGAGCATCTTCCTCGGGGCCTTTGTCATGGTCATTGGTGTCATTATCCAAATCGCTTGCGTCCCTCCTAATGGCGGTGCCACTGCCCAGTTCATCGTCGGACGATGCATCACCGGTGTCGGAAACGGCATCAACACTTCGACCATTCCTACCTACCAGGCTGA > 353 NA alternative hexose_transporter CBA13043.1 NA MGIKPAGVPGKTWPAIAIGFFVAFGGLLFGYDTGTINGILEMPYWQRLFSTGYVNTSGQPDVSPSQESSIVSILSAGTFFGALASPFLADSIGRRLGLAASCWVFNLGVVLQTAATGIPLFLAGRFFAGFGVGLISALVPLYQSETAPKWIRGAIVGAYQWAITIGLLLAAVINNATHSRQDTGSYRIPISIQFLWSLILFIGMLILPETPRFLIKRGRVEEATKALAKLRRLPENDSYVAEEIAEIKANHDYESSIGTATYLDCFRPPVLKRQFTGMALQALQQLTGINFIFYYGTTYFQNSGFSNGFVIGMITSSINVVSTIPGMYAVDRWGRRPLLLWGAIGMCVSQFLVAMLGTLTTTQDAAGNIVVLNLPAQKAAIAFVCIYIFFFASTWGPLAWVVNGEIFSLKTRAKSLSLSTATNWLLNWAIAYATPYLVNYGEGYANLQSKIFFVWFGACFICIAFVYFFIYETKGLTLEEVEELYAEGDKAVPQSDGDAAHHEKTASA Sordariomycetes Glomerella_graminicola Glomerella_graminicola_(anamorph:_Colletotrichum_graminicola) FN433645 414..539 Lingner,U.,_Munch,S.,_Deising,H.B._and_Sauer,N. NA 0:126 NA NA 24-JUN-2011 Glomerella_graminicola_hxt1_gene_for_hexose_transporter,_exons_1-5. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_D2TG02_COLGR.gb Glomerella_Spauld._&_H._Schrenk_1903 283482588 J._Biol._Chem._286_(23),_20913-20922_(2011) fungi FN433645 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi 21502323 126 NA genomic_DNA NA NA NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 31870 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella Hexose_Transporters_of_a_Hemibiotrophic_Plant_Pathogen:_FUNCTIONAL_VARIATIONS_AND_REGULATORY_DIFFERENCES_AT_DIFFERENT_STAGES_OF_INFECTION NA FN433645.1 ATGGGTATCAAGCCAGCCGGCGTGCCGGGCAAGACCTGGCCCGCCATCGCCATTGGCTTCTTCGTCGCCTTCGGAGGTCTGCTTTTCGGCTATGACACGGGCACGATCAATGGCATCCTCGAGATG > 354 NA NA hexose_transporter CBY79887.1 NA MAIAMGWQKPDNVAGSSAPAIMVGLFVASGGLLFGYDTGTINGIISMTAFRRDFTTGYTENGLPTISPAESSIIVAILSAGTVLGALLAAPIGDAWGRRISLILSVGVFSFGGIFQVCAHDIPMLLVGRFFAGIGVGSISVLVPVYQSEMAPKWIRGTLVCAYQLSITIGLLSASFVNILTEKLDTAAAYRVPLGLQLVWAVVISVGLLILPETPRFLVKQGKPEAAGLSLSRLRRLDITHPALLEELQEIVANHEYELTLGPDSYKEIFYGSPHLGRRTLTGCCLQMLQQLTGINFIMYYSTSFFDGAKVENPYLKALIINIINVVSTVPGLLVIESWGRRKLLMVGAMGMAVCQLLIASFTTAAGENLQQAAQTILIVFCAVNIFFFAASWGPVCWVITSEIYPLKVRAKANSISTASNWLLNFGIAYGTPFMVGQGAGSADIGPKIFFLWGAFCILAVLFVWCMVFETSKISLEQIDEMYERVDYAWNSTRFEPSWSFQQMLDEGWSPSGQPPPEHELQQTQTNSTTQSSQTNSNSATSTNTGATGNSTSAEAKMLSQMGNVDFSY Sordariomycetes Glomerella_graminicola Glomerella_graminicola_(anamorph:_Colletotrichum_graminicola) FR746063 310..425 Lingner,U.,_Munch,S.,_Deising,H.B._and_Sauer,N. NA 0:116 NA NA 24-JUN-2011 Glomerella_graminicola_hxt4_gene_for_hexose_transporter,_exons_1-3. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_D2TG05_COLGR.gb Glomerella_Spauld._&_H._Schrenk_1903 315064888 J._Biol._Chem._286_(23),_20913-20922_(2011) fungi FR746063 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi 21502323 116 NA genomic_DNA NA NA NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 31870 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella Hexose_Transporters_of_a_Hemibiotrophic_Plant_Pathogen:_FUNCTIONAL_VARIATIONS_AND_REGULATORY_DIFFERENCES_AT_DIFFERENT_STAGES_OF_INFECTION NA FR746063.1 ATGGCGATAGCCATGGGCTGGCAGAAGCCCGACAATGTCGCCGGCTCGTCGGCCCCGGCTATCATGGTCGGCCTGTTCGTCGCCTCGGGCGGATTGCTCTTTGGCTACGACACTGG > 355 GLRG_00124 NA hypothetical_protein EFQ24980.1 NA MSSSQHSQSLDTIASDPEARAARDYEEQHSYTQTISKFRPAIKWSIFFAITIVGEGYDLALMGNFFSMPQFQNLFGHSPGRSAAKEIPVFWQSMILTSSQLGQVSAMYFAGLSMDRFGYRRTMMFSLGTVIVFLFVTFYATAALATRDHRAGLGMIVGGSYLLACVLAYVSDISPLKLRPVLMTFVSMCWILGQLLSTVAIKSVTTIKDNDILAYRIAVAFQWVWPLPILICVFFAPESPWWLMRQSRPDLARSSLVRLNPDPAYPVDGQVKVLELTDQQEKCDQNDFEITYLECFRGVNLRRTMIVVTTNITQQLCGSSLMFYSAKLYQKAGMSSSKSYDFTLIQCAIGIICIVTSWPLMKYIGRRTIWLWGLGAAVILMAGVGVLGCFHDAHAAITWAIVILLVVFTGVYNLSIGPLTNAINPEISSTRQKAKTLVIGRVASLVAGQFNMWLLPIMLEDAPNGWGLGPRTALVYSGINVIFWVWAYLFLPEICGRPQAAIDELFKRRISARKFSQVEVETL Sordariomycetes Glomerella_graminicola_M1.001 Glomerella_graminicola_M1.001 GG697331 464980..465469 Vaillancourt,L.,_Ma,L.-J.,_Thon,M.,_Dickman,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:490 ##Genome-Assembly-Data-START##Assembly_Name_::_C_graminicola_M1_001_V1Genome_Coverage_::_9.09X_(8.17X_Q>20)Sequencing_Technology_::_454;_Sanger##Genome-Assembly-Data-END## NA 02-NOV-2010 Glomerella_graminicola_M1.001_genomic_scaffold_supercont1.1,_whole_genome_shotgun_sequence. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E3Q301_COLGM.gb Glomerella_Spauld._&_H._Schrenk_1903 255681159 Unpublished fungi GG697331 hypothetical_protein NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 490 NA genomic_DNA NA M1.001 NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 645133 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_Genome_Sequence_of_Glomerella_graminicola_strain_M1.001 NA GG697331.1 ATGTCTTCTTCGCAACATAGTCAGAGTCTAGACACCATCGCCTCCGACCCAGAGGCAAGAGCCGCCAGGGACTACGAGGAGCAACATTCTTACACGCAGACTATCAGCAAGTTCCGCCCTGCAATTAAGTGGTCCATTTTCTTCGCCATTACCATTGTTGGAGAGGGCTACGATCTTGCCCTCATGGGCAACTTCTTTTCCATGCCCCAGTTCCAAAATCTCTTTGGCCACTCCCCAGGACGCAGTGCCGCCAAGGAAATACCCGTCTTTTGGCAATCCATGATCCTCACCAGCAGCCAGCTTGGACAGGTTTCCGCGATGTACTTCGCCGGCCTGTCTATGGACAGATTTGGCTACCGTAGAACCATGATGTTCTCCCTCGGGACCGTCATAGTGTTCCTCTTTGTCACATTCTACGCGACGGCGGCATTAGCCACGAGAGACCACAGGGCAGGCCTCGGAATGATAGTCGGCGGTAGCTATCTCTTGG > 356 GLRG_00903 NA hypothetical_protein EFQ25759.1 NA MSEKIDAVDTVHKEIETRVVTGSEAFNEAMIKEPPKAWSKPQLFIYAFSLVGFFCSTMNGYDGSLINNLLQNPSFKERYGAKNDGIWAGIISSMYQIGGVIALPFVGPALDTWGRRIGMLIGAGIIVIGTCVQATANGTSQFMGGRFLLGFGVSIAASAGPMYVVEINHPAYRGVVGAMYNTLWFSGAIIASGVARAALDIEGDASWRLITWMQALFSGLICLFCMWMPESPRWLFVNNKKEQAAAILAKYHGNGNTDSPWVKLQLHEYEELLNMDGADKRWWDYRALFRDRASIYRLSANVCISIFGQWAGNAVLSVLDTAGYTHPIQQANITLINSCQQFAFAIFGALLVDRVGRRPLLLFSFAACTFVWLGMTVASGILSKSQIGETDGGSPIFDNPAASQACLAMIFIFGSVFSVGITPLQALYPVEVLSFEMRAKGMAFSNLAVNAAGLLNQFAWPVSMEKLAWKTYIIFTIWDAVQTAVVFFFIPETKGRTLEELDHIFADPNPVKASIRKKAVAVDRYGDVVNVQDV Sordariomycetes Glomerella_graminicola_M1.001 Glomerella_graminicola_M1.001 GG697332 1559428..1559463 Vaillancourt,L.,_Ma,L.-J.,_Thon,M.,_Dickman,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:36 ##Genome-Assembly-Data-START##Assembly_Name_::_C_graminicola_M1_001_V1Genome_Coverage_::_9.09X_(8.17X_Q>20)Sequencing_Technology_::_454;_Sanger##Genome-Assembly-Data-END## NA 02-NOV-2010 Glomerella_graminicola_M1.001_genomic_scaffold_supercont1.2,_whole_genome_shotgun_sequence. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E3Q407_COLGM.gb Glomerella_Spauld._&_H._Schrenk_1903 255681158 Unpublished fungi GG697332 hypothetical_protein NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 36 NA genomic_DNA NA M1.001 NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 645133 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_Genome_Sequence_of_Glomerella_graminicola_strain_M1.001 NA GG697332.1 ATGAGCGAGAAGATCGACGCCGTGGACACGGTCCAC > 357 GLRG_04088 NA hypothetical_protein EFQ28944.1 NA MGGHASGNAAYDAALQRRQALMGASGARALVKNWKVARIAAFACIGGVLYGYNQGMFSGILAMPSFEKHMEGYTKNQTQKGWLTAILELGAWVGAILSGFIAEVCSRKYGVLIATGVFILGVVVQITSISGGHESILGGRFITGMGVGSLSMIVPLYNSECAPPEVRGALVALQQLAITFGIMISFWIEQVAPFPDRTGCNYIGGTTEATQSDAAWLVPISLQLAPAALLFIGMIWMPFSPRWLIHHGREEEARRVLANLRDLPENHELIELEFLEIKAQSLFEKRSTAEHFPHLQELNAWNTFKLQFVAIKALFQTKAMFKRVIVATVTMFFQQWTGINAVLYYAPQIFGQLGLSETTTSLLATGVVGVVMFIATIPAVLWIDRVGRKPVLTIGAIGMGTCHLIIAVILAKNIDRFDQQPAAGWAAVCMVWLFVVHFGYSWGPCAWIIIAEVWPLSTRPYGVSLGASSNWMNNFIVGQVTPDMLTNITYGTYILFGILTYLGAAFIWFIVPETKRLSLEEMDLLFGSEGAAAADFERMEEINNEIGLTAVLNHTSPNDRLSHLADLEKTDI Sordariomycetes Glomerella_graminicola_M1.001 Glomerella_graminicola_M1.001 GG697342 995616..995768 Vaillancourt,L.,_Ma,L.-J.,_Thon,M.,_Dickman,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:>153 ##Genome-Assembly-Data-START##Assembly_Name_::_C_graminicola_M1_001_V1Genome_Coverage_::_9.09X_(8.17X_Q>20)Sequencing_Technology_::_454;_Sanger##Genome-Assembly-Data-END## NA 02-NOV-2010 Glomerella_graminicola_M1.001_genomic_scaffold_supercont1.12,_whole_genome_shotgun_sequence. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E3QDH2_COLGM.gb Glomerella_Spauld._&_H._Schrenk_1903 255681148 Unpublished fungi GG697342 hypothetical_protein NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 153 NA genomic_DNA NA M1.001 NA Glomerella_graminicola NA complement Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 645133 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_Genome_Sequence_of_Glomerella_graminicola_strain_M1.001 NA GG697342.1 CTAAATATCAGTCTTCTCTAGATCGGCCAAATGAGACAGTCGATCATTGGGCGATGTGTGATTCAGCACCGCGGTCAGGCCAATTTCATTGTTGATCTCCTCCATGCGCTCAAAGTCAGCAGCGGCTGCCCCCTCGGAGCCAAACAATAGGTC > 358 GLRG_05547 NA hypothetical_protein EFQ30403.1 NA MLDFLRTHNYKVTTHITSNLLMVTMIFGMSVFTFGYEGSTLNTIQAMTPFEKRFGDFLPETHDYGFTSNKLAYMNSFPLLIYAVGVIVGAQIGERWGRRLVFVLTNIVCLGGTITVYTAKNYSQLLAGRMIVNFHVGMEAFLIPMFQAEIAPAPVRGSLTAIYGVNGVFASFIASVVTDVTSKYQDDRCWKIPVGIGFIFPAFSLFFWALIPESPRWLLRKGDYANAVKNLDYIYGAMPNYDAEKEAKLLQEALNTSETKGKWKDLVKGPNLRRTGNGLIASALSQLSGSSFSNLYGTIFLKSLKVIDPFMATMVKRALLLATAIVFMFTIDKAGRRPLFLYMGFMQTAVLMVMGGLGTIAHPTLDINKGIVAMTMMFPIFHFVSFGGPLQLTKTEIPHITLRDKSVMLFWLTANLCNFIASFTLPYLLQEPANLGSRVGLIYGSISALGLVWGWFCMPEMSNKSLEEIDEMFAAGVPAWKSRHWRGEQTAKITELESHGAVSDSDSERNSIAKSQTEPTIQEKQSKV Sordariomycetes Glomerella_graminicola_M1.001 Glomerella_graminicola_M1.001 GG697349 252560..252696 Vaillancourt,L.,_Ma,L.-J.,_Thon,M.,_Dickman,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:>137 ##Genome-Assembly-Data-START##Assembly_Name_::_C_graminicola_M1_001_V1Genome_Coverage_::_9.09X_(8.17X_Q>20)Sequencing_Technology_::_454;_Sanger##Genome-Assembly-Data-END## NA 02-NOV-2010 Glomerella_graminicola_M1.001_genomic_scaffold_supercont1.19,_whole_genome_shotgun_sequence. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E3QHR5_COLGM.gb Glomerella_Spauld._&_H._Schrenk_1903 255681141 Unpublished fungi GG697349 hypothetical_protein NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 137 NA genomic_DNA NA M1.001 NA Glomerella_graminicola NA complement Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 645133 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_Genome_Sequence_of_Glomerella_graminicola_strain_M1.001 NA GG697349.1 CTAAACTTTGGATTGTTTTTCCTGAATCGTCGGCTCCGTTTGACTTTTCGCTATGCTATTTCTTTCGCTGTCGCTGTCACTCACCGCACCGTGGCTCTCCAACTCGGTGATCTTTGCCGTTTGCTCGCCTCGCCAGT > 359 GLRG_07205 NA hypothetical_protein EFQ32061.1 NA MADQNTAAAAAEPNMSEKQEKREQPSDSGSRTPSPVDRRRVADEKPKSKGFLARMGDLPEWGFRGQRLQGKVLNWSIGFIASCGFLMFGYDQGVLGSLLTLDDFQRSITLMTPLEQSNSLCWLDFPENTQRDYSQCTGDPNTQAAAVAVYQIGCFLGAVLILFYGESWGRKSSTFWGSAIMIFGTILQASAHEYGLFSAGRIVGGIGNGMVTSTIPTWQSECARPHQRGFLITLSGALISCGIAIAYWVDYGFYFLEGSIRWRFPVSFQSFFTIIVMIGLLYLPDSPRWLAMKGRMEEAREVTSRLLGKPIDHEDVTIEVKAIQEALEAQSQGGSFKFKELLTNGPSQNLRRTLLGIFAQFFQQICGINLITYYSGFLFENSLGFGPELSRLLAALNGTEYFLASLVALPLIERTGRRKLMLFGAFGMMASMAILAGTVSTGTVDETGAPKLESVYGITATVFLFVFNSFFAIGWLGMTWLYPAEITNLRIRIQANALSTCSNWLSNFLIVMITPPAFANLGYRTYVMFAVFNAVIIPCVYFFFPEPKGRSLEELDVIFASAHADKVNPVKRAKEMRKVEGRELENELDKYFGSSEMVEDARPMMQ Sordariomycetes Glomerella_graminicola_M1.001 Glomerella_graminicola_M1.001 GG697359 226987..227263 Vaillancourt,L.,_Ma,L.-J.,_Thon,M.,_Dickman,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:277 ##Genome-Assembly-Data-START##Assembly_Name_::_C_graminicola_M1_001_V1Genome_Coverage_::_9.09X_(8.17X_Q>20)Sequencing_Technology_::_454;_Sanger##Genome-Assembly-Data-END## NA 02-NOV-2010 Glomerella_graminicola_M1.001_genomic_scaffold_supercont1.29,_whole_genome_shotgun_sequence. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E3QMH3_COLGM.gb Glomerella_Spauld._&_H._Schrenk_1903 255681131 Unpublished fungi GG697359 hypothetical_protein NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 277 NA genomic_DNA NA M1.001 NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 645133 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_Genome_Sequence_of_Glomerella_graminicola_strain_M1.001 NA GG697359.1 ATGGCCGACCAGAACACGGCCGCCGCCGCGGCTGAGCCCAACATGTCCGAGAAGCAGGAGAAGCGCGAGCAGCCTAGCGACAGCGGAAGCCGGACGCCCTCTCCGGTTGACCGCAGACGCGTCGCCGACGAGAAACCAAAATCCAAGGGATTCCTCGCGCGCATGGGCGACTTGCCCGAATGGGGCTTCCGCGGCCAGCGCCTTCAGGGCAAGGTGCTCAACTGGTCCATTGGATTCATCGCGTCTTGTGGTTTCCTCATGTTTGGATACGACCAGG > 360 GLRG_07693 NA major_facilitator_superfamily_transporter EFQ32423.1 NA MSTPTAQPADPIAKGVLATAKQSLKDLFIWKQRTVVVTPDGETLTEWQDPDPIKNPISLMAQLSPRDWLFFICGFCAWTADAFDFHALSIQTTKLAKYYDRSKTDITTAITLTLLLRSIGAAAFGLAGDKYGRKWPMVANMIILGLLQIATIYSTTFQQFLAVRSLFGLFMGGVYGNAIAMALEHCPSNARGLMSGILQQGYSFGYVLAACANLGVGGGVETWKTVFWIAAGISIAVGLVRIVFPESQQFLEAKARGKKTASPGAFWRETKKMLAQEWKMCVYCIILMTWFNYYSHTSQDSYTTFMIAQKEMDNSGASRASILMKAGACVGGTIIGYLSQFFGRRRAIIASALMSACLIPAWILPQGERALSASGFFMQFFVQGAWGVIPIHLNELSPPAFRSSFPGITYQLGNMISSPSAQIVNAIAEKTFVRAPSGHSVEAYGPVMGIATAIIAMGIVITTMFGPERRGRSFEHAVAGVQGEVAETKEMDDHDEEKGSIRAATVENAAPHKE Sordariomycetes Glomerella_graminicola_M1.001 Glomerella_graminicola_M1.001 GG697362 106444..107003 Vaillancourt,L.,_Ma,L.-J.,_Thon,M.,_Dickman,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:560 ##Genome-Assembly-Data-START##Assembly_Name_::_C_graminicola_M1_001_V1Genome_Coverage_::_9.09X_(8.17X_Q>20)Sequencing_Technology_::_454;_Sanger##Genome-Assembly-Data-END## NA 02-NOV-2010 Glomerella_graminicola_M1.001_genomic_scaffold_supercont1.32,_whole_genome_shotgun_sequence. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E3QNR6_COLGM.gb Glomerella_Spauld._&_H._Schrenk_1903 255681128 Unpublished fungi GG697362 major_facilitator_superfamily_transporter NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 560 NA genomic_DNA NA M1.001 NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 645133 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_Genome_Sequence_of_Glomerella_graminicola_strain_M1.001 NA GG697362.1 ATGTCGACGCCAACCGCTCAGCCCGCCGACCCTATCGCCAAGGGCGTCTTGGCCACGGCGAAGCAGTCCTTGAAAGACCTCTTCATCTGGAAGCAGCGTACTGTCGTCGTCACCCCGGACGGCGAGACGCTCACGGAATGGCAGGATCCCGACCCCATCAAGAACCCCATCAGCCTGATGGCCCAGCTGAGCCCTCGCGACTGGCTCTTCTTCATCTGTGGTTTCTGCGCCTGGACAGCCGATGCCTTTGACTTCCACGCCCTCTCTATCCAGACCACCAAGCTGGCCAAGTACTACGACCGCTCAAAGACGGACATCACCACGGCCATCACCCTAACCCTTCTGCTCCGTTCCATCGGTGCCGCCGCCTTCGGTCTGGCCGGTGACAAGTATGGTCGCAAGTGGCCCATGGTTGCCAACATGATCATCCTCGGTCTCCTCCAGATTGCCACCATCTACAGCACCACATTCCAGCAGTTCCTGGCTGTGCGCAGCTTATTCGGTCTCTTCATGGGAGGAGTCTACGGAAACGCCATTGCCATGGCTCTTGAGCACTGCCC > 361 GLRG_09026 NA hypothetical_protein EFQ33882.1 NA MAEKASSNYPGVSTEQQETVLSNASLEPYGPSGFRGILVSHYVAICAAFSAIGGLLFGYDQGVISVTLVMDQFLERFPEVSDHAAGSGFKKGLMTAMITLGAFVGAMNQGWIADMISRKRSIMVAVVVFTIGSSIQTSAVNYNMLVGGRFIGGLGIGMLSMVVPLYISEISPPEIRGSLLVFEQLSIVFGIVISFWITFGTKEIPSHWAWQLPFLIQILPGLLLGFGAVFLPYSPRWLASKGRETEALNSLCKLRVLPDTDPRVRREWMDIIAEARFQTAVLADRHPTLVSKGDVVSTLKLEAVSWTDCFKKGCFKRTQVGIFLMFFQQFVGINALIYYSPTLFETMGLDHNMQLIMSGVLNCVQLVGVIPSLWTMDRFGRRWILLVGSLGMTISHTAIAILVGLYSNDWPSHTTQGWVSVAFLLLYMLVFGATWGPVPWAMPSEVFPSSLRAKGVAISTCSNWINNFIIGLITPPMVQGTGFGAYVFFAAFCLLSGIWTWFCVPETNGKTLEQMDEVFGDRTGLDDVAKKDRIFRDVVDEQTRSSVTLPA Sordariomycetes Glomerella_graminicola_M1.001 Glomerella_graminicola_M1.001 GG697374 271278..271546 Vaillancourt,L.,_Ma,L.-J.,_Thon,M.,_Dickman,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:>269 ##Genome-Assembly-Data-START##Assembly_Name_::_C_graminicola_M1_001_V1Genome_Coverage_::_9.09X_(8.17X_Q>20)Sequencing_Technology_::_454;_Sanger##Genome-Assembly-Data-END## NA 02-NOV-2010 Glomerella_graminicola_M1.001_genomic_scaffold_supercont1.44,_whole_genome_shotgun_sequence. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E3QSP4_COLGM.gb Glomerella_Spauld._&_H._Schrenk_1903 255681116 Unpublished fungi GG697374 hypothetical_protein NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 269 NA genomic_DNA NA M1.001 NA Glomerella_graminicola NA complement Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 645133 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_Genome_Sequence_of_Glomerella_graminicola_strain_M1.001 NA GG697374.1 CTACGCTGGCAAAGTTACTGAAGAGCGAGTTTGCTCATCCACGACGTCGCGGAAAATCCGATCCTTCTTTGCAACGTCGTCAAGTCCGGTGCGGTCACCAAACACCTCGTCCATCTGCTCGAGCGTTTTCCCGTTGGTCTCGGGTACGCAGAACCAGGTCCAGATTCCGGAAAGCAAACAAAAAGCGGCGAAAAACACGTAAGCTCCAAACCCTGTCCCTTGGACCATTGGAGGAGTTATGAGACCGATGATGAAGTTGTTGATCCAGT > 362 NA NA hexose_transporter CBS32699.1 NA MLFGFDISSMSAWIGADSYKEYFNHPSSTLQGGITAAMSGGSLVGALIAGFLADWWGRRGALKLASAIWILGAILQCSSQNVPHLIVGRVVSGFAIGITSSQCCVYLAELAPSRIRGRIVGIQQWSIEWGILIMYLISYGCAVTIDGPSAFRIAWGVQGIPGLILGAALFFFPESPRWLGQKDRWEECHEVLAHLHAGGDHDAPVVLAELDEVKEASRIAAESKNIGVLGLFGPRVWKRTLAGCSVQVWQQLLGGNIILYYLIYIFNMAWQTGNVALTSSIIQYVIFLVTTGAILPIIDRLGRRPLLIGGAIICCVIHFTTGAVMKVHGNPVDSVDGDDNLRWAISGPPAKGVIALCYIFVGVYGLTWAPIGWIYASEVFPLKYRATGVGFAAACNWAFNLALAFFVPPAFTNIQWKTYMIFGTFCAVMTVHIFLTYPETSGKTLEEIDELFDANVPAWRTKSAGVRFEDRVADAEGKKSDFDASHTERVEV Sordariomycetes Glomerella_graminicola Glomerella_graminicola_(anamorph:_Colletotrichum_graminicola) FN998944 2322..3125 Lingner,U._and_Sauer,N. NA 0:804 NA NA 10-JAN-2011 Glomerella_graminicola_hxt12_gene_for_hexose_transporter,_exons_1-3. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E6ZDS7_COLGR.gb Glomerella_Spauld._&_H._Schrenk_1903 317431842 Unpublished fungi FN998944 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 804 NA genomic_DNA NA NA NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 31870 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_HXT_gene_family_of_Colletotrichum_graminicola NA FN998944.1 ATGCTCTTCGGCTTCGATATTAGTTCCATGAGCGCTTGGATCGGTGCCGATTCCTACAAGGAGTATTTCAACCATCCAAGCTCGACCCTGCAGGGCGGCATCACCGCCGCCATGTCCGGCGGTTCCCTGGTTGGCGCTCTTATAGCGGGTTTCCTTGCCGATTGGTGGGGCCGACGCGGCGCCTTGAAGCTCGCCTCCGCCATCTGGATCCTCGGTGCCATCCTCCAGTGCTCTTCTCAGAACGTCCCCCATCTCATCGTCGGCCGTGTCGTCAGTGGTTTTGCCATCGGTATCACGAGTTCTCAATGTTGCGTCTACCTCGCAGAGCTCGCCCCCTCCCGCATTCGTGGACGCATCGTCGGCATCCAACAGTGGTCCATCGAATGGGGTATCCTCATCATGTACCTCATCTCATATGGATGTGCCGTCACCATTGATGGTCCTAGTGCGTTCCGTATCGCATGGGGTGTCCAGGGTATTCCCGGTCTCATCCTTGGCGCTGCTCTTTTCTTCTTCCCCGAGTCCCCTCGTTGGTTGGGCCAGAAGGATCGCTGGGAAGAGTGCCACGAGGTTCTGGCTCATCTGCACGCCGGCGGTGACCACGATGCCCCCGTTGTTCTCGCTGAACTTGACGAAGTCAAGGAGGCTTCCCGTATTGCTGCCGAGTCCAAGAATATTGGTGTTCTCGGTCTCTTCGGTCCCCGCGTCTGGAAACGTACATTAGCAGGCTGCAGCGTTCAGGTATGGCAACAGCTCCTAGGAGGCAATATTATTCTTTATTACCTCATCTATATCTTCAATATG > 363 NA NA hexose_transporter CBS32703.1 NA MSGGSSVHGLTGRALIYFTSIFVSLGVFLFGYDQGVMSGIITGPHFKNYFHQPSTAEIGTMVAILEVGAFISSLIVGKVGDIIGRRKTILYGSMIFFVGGALQTFANGMPMMMLGRIIAGLGVGALSTIVPVYQSEISPPHNRGKLACIEFSGNIIGYTTSVWVDYFCGFIDSDMSWRLPLLMQCVMGALLGFGSLVIVESPRWLLDNDHDEEGIVVIANLYGKGDIHNPKARDEYREIKMNVLLQRQEGERTYAEMFRKYKTRVFIAMSAQGLAQLNGINVISYYAPYVFESAGWVGHDAVLMTGINGITYLLSTIPPWYLVDRWGRRPILLSGAIIMSISLSLISYWIYLDITYTPTLVVIFVMIYNAAFGYSWGPIPWLYPPEILPLNIRSKGASLSTATNWAFNWLVGEMTPILQEWIKWRLYLVHAFFCAVSFVVVYFIYPETCGVRLEEMDSLFGDASTAIGTPSIHAAENDSLMRVGSPIGSIDYRGRPGNFTANSAIPGLSLDPPDIPDGKGQDGEASSTISGWVSRVVGRTRDQSSGGSGRYAPVNNQDD Sordariomycetes Glomerella_graminicola Glomerella_graminicola_(anamorph:_Colletotrichum_graminicola) FN998948 1175..1221 Lingner,U._and_Sauer,N. NA 0:47 NA NA 10-JAN-2011 Glomerella_graminicola_hxt15short_gene_for_hexose_transporter,_exons_1-5. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E6ZDT1_COLGR.gb Glomerella_Spauld._&_H._Schrenk_1903 317431850 Unpublished fungi FN998948 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 47 NA genomic_DNA NA NA NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 31870 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_HXT_gene_family_of_Colletotrichum_graminicola NA FN998948.1 ATGTCGGGCGGTTCCTCTGTTCACGGCCTCACAGGCCGCGCCCTGAT > 364 NA NA hexose_transporter CBS32707.1 NA MSYLGLQGKSLGLTLSIVAATAFALQGYDQAVMNGLLTLDTFKHQFPQIKNANIEGTYACFPLLLGTAVAIYEIGCAIGALSCAFVGDVLGRRRTIFIAGCIVMIGVAIQSSSFSLGQLIASRIITGLGVGALTATVPMWVSECSSAKERGRRVLLQGFFAIGGIVVASWMEFGLYFVENNQVNFRFPIAFQGLFAIIITSLVMFLPESPRWLIRQERFEDAKKVMAALQGLPEDSEVINGELSLIRDAYIEEQHQAGSVFTMGPERQFHRAALAVGIAVLAQMSGINIVTFYSTTIFQQQLHYSPTESRIFSACLQVWQFIAAGFALLLIDKFGRRKLLMAGALGMCVAQTSLAGLMSDQANKSAGEAAIFFYFVAMFFFPVGLFLLPFMYAAEIAPLNIRAQVTAISACANWLFNFLVAEVSPHAMENIGYRYYIVYACITLFTFTVLFFFYPETKGRTLEEIDDIFIQSKSIWDPVKVEKNLPRNAVALAERIRHVHDEEKHKATHTEEV Sordariomycetes Glomerella_graminicola Glomerella_graminicola_(anamorph:_Colletotrichum_graminicola) FN998952 1451..1627 Lingner,U._and_Sauer,N. NA 0:177 NA NA 10-JAN-2011 Glomerella_graminicola_hxt19_gene_for_hexose_transporter,_exons_1-3. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E6ZDT5_COLGR.gb Glomerella_Spauld._&_H._Schrenk_1903 317431858 Unpublished fungi FN998952 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 177 NA genomic_DNA NA NA NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 31870 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_HXT_gene_family_of_Colletotrichum_graminicola NA FN998952.1 ATGTCGTACCTTGGCCTTCAGGGCAAGTCCCTCGGTCTCACACTGAGTATAGTCGCAGCCACGGCCTTCGCTCTCCAGGGCTACGACCAAGCCGTCATGAACGGTCTACTGACCCTGGATACCTTCAAGCACCAGTTTCCCCAGATAAAGAACGCCAATATTGAGGGTACGTACGCA > 365 NA NA hexose_transporter CBS32716.1 NA MVCLHNGLHSEKVADVSGYHEERGTGQPDPIELSRNIEAKIKNPLEGIGYNQLMRDVEVFCRDHGLQEEIAVFRKGALVAQDPENYENIGGAEALDEAEIKALREEVTHKWRLPKKLYLTIITCSIGAAVQGWDQTGTNGANIFFPAEYGIESNSTRDRLILGLVNAGPYIGSALCGCWLSDPLNHYFGRRGVIFFSAHFCIWPLIGSAFSHNWQQQLANRLLMGIGMGAKASTVPIYAAENSPPSIRGALVMSWQMWTAFGIALGTAFNLAVYYAKYNWRLMLGKSKSDPRLYSTYDLTLSPRWLMKKGRYHDAWKSMIQLRHNPIQCSRDMYAIHAQLQLENQVLGKSSYVSRFKELFTIPRVRRANLAAFTVMIAQQMCGINIIAFYSTTIFKEAKMGDFEALLGSFGFGMVNWLFAFPAFWTIDTFGRRSLLLFTFPQMTWTLLAAGLCTLIAPGITRTALVSLFVYLFGAFYSPGEGPVPFTYSAEVYPLSHREMGMGFAVATCLFWAAILGMTFPFILDRLQVVGAFGLYAGFNVVAFCMILFWVPETKQRTLEELDWVFALPTSRFAAYQVTKAIPYFFRRWVFFDRSAKLEPLYTFQQPDRTERVVSSDEEKKTF Sordariomycetes Glomerella_graminicola Glomerella_graminicola_(anamorph:_Colletotrichum_graminicola) FN998961 933..1051 Lingner,U._and_Sauer,N. NA 0:119 NA NA 10-JAN-2011 Glomerella_graminicola_hxt28_gene_for_hexose_transporter,_exons_1-5. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E6ZDU4_COLGR.gb Glomerella_Spauld._&_H._Schrenk_1903 317431876 Unpublished fungi FN998961 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 119 NA genomic_DNA NA NA NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 31870 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_HXT_gene_family_of_Colletotrichum_graminicola NA FN998961.1 ATGGTATGCTTACACAACGGTCTCCACAGTGAAAAGGTAGCCGATGTCTCCGGGTACCATGAGGAGCGTGGAACTGGCCAGCCTGACCCTATCGAGCTGAGCCGTAACATCGAGGCGAA > 366 NA NA hexose_transporter CBS32717.1 NA MGFLKGLSQKKPKSEVVAQAQEEAPEFERVNWMKDPGLRKLYFYAIVLCIASATTGYDGYVNFDSWEEFFDHPKGGQLGLLSAFYQIGSLISIPIVPWVADNYGRRIPIIFGCVIMVAGAILQGACQNLGMFMGGRVLLGFGNSFAQIASPMLLAELCHPQHRARLTTVYNCLWNVGALVVAWLSFGTDFLGNEWSWRIPAIGQAVPSVIQLLFIFWVPESPRFLIAKDRHDEALQILGKYHANGNTDHPTVQFEFREIRETIKREIAAKNSTSYLDFFRTPGNKYRFMMLISLGLFSQWSGNAIISNYTNILYTNAGIESSTSRLGLSAGQTGLSLIVSVTLAMQVDRFGRRPIFLASTAGMLMTFVFWTLSDGLFEEYGSPGSNYAMIFFIWLFGFFYSFAWSGLLISYSIEILPYKLRAKGLMIVNLTVQAALTLNNYANPYAFEYFKGHTWKLYLIYTCWIFLELTFVYFFYIETKGPTLEELVKVIDGPDAEVADLDLAQVEQEVKIGHEAEELEHKRG Sordariomycetes Glomerella_graminicola Glomerella_graminicola_(anamorph:_Colletotrichum_graminicola) FN998962 681..863 Lingner,U._and_Sauer,N. NA 0:183 NA NA 10-JAN-2011 Glomerella_graminicola_hxt29_gene_for_hexose_transporter,_exons_1-8. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E6ZDU5_COLGR.gb Glomerella_Spauld._&_H._Schrenk_1903 317431878 Unpublished fungi FN998962 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 183 NA genomic_DNA NA NA NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 31870 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_HXT_gene_family_of_Colletotrichum_graminicola NA FN998962.1 ATGGGTTTCTTGAAGGGCCTGTCGCAGAAGAAGCCCAAGAGCGAGGTTGTCGCCCAAGCTCAGGAAGAGGCTCCCGAATTTGAGAGGGTCAACTGGATGAAGGACCCCGGTCTGCGAAAACTATACTTTTACGCAATCGTTCTTTGTATTGCCTCCGCAACCACCGGTTACGATGGGTATGTC > 367 NA NA hexose_transporter CBS32718.1 NA MLRKTQTGTWLPAWVPESTLVLSLLLILCSFVQSCTVGYDTALLNAFNILPAYRDYFQLNAATTGLNTASIFIGGILGPMFAGVAADRLGRRPAMFWSSLVAIVGVLLQTAAQNIAMFIVGRIIIGLGASASGIAGGVYLSETFHSRFRAWGVGSLNDFYWIGAILAAGITLGTGSWTTSWAWRAPSLFQGIFSLLCIAILPFVPESPRWLQYQGHSDEARLAVAQTNADGDVSDPDVVVIYNEIVDSLTSEKEHDSSIADIVKNPVVRRRFLIGASVGPMSTVVGNLIALFYLGPELSSAGVTDSRTQLHVNVVLNVWCLVCCLLGTFLVTAWGRRPTAIAGQSLLTACLFVIGGLSKVYSDNGPERTPTSLVYGNVAVIFLFQGFYSLAWTPITYLYPTEVMNYSIRAKGLAFSSLMLSSLTLLLVFIMPIALENIGWKMYIVNGSWDVIILLIVVIFWVETKGKTLEEVDAIFYRRK Sordariomycetes Glomerella_graminicola Glomerella_graminicola_(anamorph:_Colletotrichum_graminicola) FN998963 670..774 Lingner,U._and_Sauer,N. NA 0:105 NA NA 10-JAN-2011 Glomerella_graminicola_hxt30_gene_for_hexose_transporter,_exons_1-4. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E6ZDU6_COLGR.gb Glomerella_Spauld._&_H._Schrenk_1903 317431880 Unpublished fungi FN998963 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 105 NA genomic_DNA NA NA NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 31870 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_HXT_gene_family_of_Colletotrichum_graminicola NA FN998963.1 ATGCTACGAAAGACACAGACGGGAACGTGGTTGCCCGCGTGGGTGCCAGAGTCCACCTTGGTCTTGTCCCTCCTCCTCATTCTATGCTCATTTGTACAGTCGTGT > 368 NA NA hexose_transporter CBV37341.1 NA MGELRGQRLVIAVSILTSLGFMLIGYDNGLMGGLVNSPAFNSTFDSPDPTMTGLIVAIYEIGCFIGCIATAGFGENLGRRKTIAIGCVIMVAGAIVQAASYGRAQLIVGRTVSGVGMGIVNSTVPVLQAEFSPKASRGIYVCAQLSTLNFGIFLIYWIDYAFSSHIGSYAWRVPVIMQCICLVPMFILLQMIPETPRWLAAHDRSDECLDVLRRLKGDEEDDESIQILHSSIMQTVSYESAVSAHSWKDIFVQDQIKSQKRFLIACAIQGFQQLGGINAIIYYSSTLFEKSIGFDSHMSSLMSGFLQTWFFLASFIPWFLIDRVGRRPLLLSMISLMAVVMAVQAALIYQVQNATAVAKAAGIGAAAMLFVFQGAFTIGFQATVWVYPSEILPLHIRQVGSSISSATNWIFNYMIVQITPISIASIGWKTYIIFAVLNAAWVPIIYLFFPETKGLELEDVDRLFSGEDILDQRFGSEDKVEVWDIEEVRR Sordariomycetes Glomerella_graminicola Glomerella_graminicola_(anamorph:_Colletotrichum_graminicola) FR667710 968..1070 Lingner,U._and_Sauer,N. NA 0:103 NA NA 10-JAN-2011 Glomerella_graminicola_hxt31_gene_for_hexose_transporter,_exons_1-8. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E7AIM7_COLGR.gb Glomerella_Spauld._&_H._Schrenk_1903 317451427 Unpublished fungi FR667710 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 103 NA genomic_DNA NA NA NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 31870 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_HXT_gene_family_of_Colletotrichum_graminicola NA FR667710.1 ATGGGCGAACTTCGCGGCCAGCGGCTCGTCATAGCCGTCAGCATCTTGACATCGTTAGGTTTCATGCTTATCGGCTACGACAATGGCCTCATGGGAGGACTAG > 369 NA NA hexose_transporter CBV37362.1 NA MMFSKLKDSKPNQEATIHAQEEAPDFEHVTWYQDPGLRKLYWHAFILCVGSASTGYDGMFFNSVQNFDSWKDYFDHPTDHLLGLLAALYQIGSLGSIPIVPYFTDHFGRRLPIVIGGVITIAGALLQGCCQNLGGFMGGRVLLGFGNSFSQMASPMLLTEICHPQHRARLTTVYNCLWNVGSLTVAWVCFGTNFMNSHWSWRIPAILQALPSVVQIVGIYWVPESPRYLIANDRLDEALEILAKYHANGNAEHPTVKFEYREIRDTIRLERLAKEHSSYLDFFRSPGNRYRLMILISLGIFSQWSGNAIISNYTNILYDNAGVTDSTAKLGLSAGSSMVSLIVSITFALMVDKFGRRPTFLTSTGGMFGTFVFWTLTCALYEEYGSPGANHAMIFFIWVFNVAYAIAWSGLLIGYAVEILPYQLRAKGLMILNIAIQSALTLNNYANPVALDFFEGETWKLYLIYTVCYCWIFLELCFVYFKYVETKGPTLEELVKVIDGPDANVVQLNIQQIEKETQMNATRDSETAEGANSADHSIDNKGTLRT Sordariomycetes Glomerella_graminicola Glomerella_graminicola_(anamorph:_Colletotrichum_graminicola) FR667731 928..1226 Lingner,U._and_Sauer,N. NA 0:299 NA NA 10-JAN-2011 Glomerella_graminicola_hxt52_gene_for_hexose_transporter,_exons_1-8. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E7AIP8_COLGR.gb Glomerella_Spauld._&_H._Schrenk_1903 317451469 Unpublished fungi FR667731 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 299 NA genomic_DNA NA NA NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 31870 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_HXT_gene_family_of_Colletotrichum_graminicola NA FR667731.1 ATGATGTTCTCGAAGCTCAAGGATTCGAAGCCCAACCAAGAGGCGACTATCCATGCTCAAGAGGAAGCTCCTGACTTCGAGCATGTCACCTGGTACCAGGACCCTGGTCTGCGGAAGCTTTACTGGCATGCCTTCATTCTTTGTGTTGGCTCCGCTAGCACTGGCTACGACGGCATGTTTTTTAACTCGGTCCAGAATTTCGATTCGTGGAAGGATTACTTCGACCATCCTACTGACCACCTTTTGGGACTTCTCGCTGCACTCTACCAGATTGGAAGTCTTGGCTCCATTCCCATTGT > 370 NA NA alpha_glucoside_transporter CBV37386.1 NA MSNQTDSKSTGEDPTKVESYTADVNHVSEVDEKAKAADFKADAIEAEQAEQNMGVLEAVKLYPMASLWAFIMSTTIIMESYCVFLMGAFVAMDEFKLQFGVLDREGAYQIEASWQSALQVGGPLGAIIGVCIAGPITSRIGYRWATITGLMVLNAFIFIFYFANSLAVMFVSQLLEGIPWGIFIANAPAYCSEIVPMRLRAPATQMLQMFWAIGAIIVGGVCYVYESKSDSSAWKVPIALQWMFPTPLAVLLFIAPESPWWLVRKGRLEEAAKSVRRLGRSTERTSIDESIAMMRRTIENEKSVKEPSYAELFKGTDRYRTLIVCGVYAAQNLTGNLIANQAVYFFRQAGIGSNLAFALGLITSALQTVFVMLSWILTTYLGRRTIYVWGSLINVCFLIALGIAGSVGESNAASLAMASLGLIVSVGFTLGPAPASWVIIAETSAVRLRPLTTGIGRAAYYIVNIPCIFLATYMLNPTGVNLGGRCGYVWGATGFVCFVVSYIWLPEMKGRSFREIDIMFKRRIPARQWKKTVIDINDDE Sordariomycetes Glomerella_graminicola Glomerella_graminicola_(anamorph:_Colletotrichum_graminicola) FR667755 617..844 Lingner,U._and_Sauer,N. NA 0:228 NA NA 10-JAN-2011 Glomerella_graminicola_agt15_gene_for_alpha_glucoside_transporter,_exons_1-5. NA Glomerellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Colletotrichum_graminicola_E7AIS2_COLGR.gb Glomerella_Spauld._&_H._Schrenk_1903 317451517 Unpublished fungi FR667755 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 228 NA genomic_DNA NA NA NA Glomerella_graminicola NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 31870 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Glomerellaceae,_Glomerella The_AGT_gene_family_of_Colletotrichum_graminicola NA FR667755.1 ATGAGCAACCAGACCGACTCCAAGTCGACCGGCGAAGACCCCACAAAGGTCGAGTCCTACACCGCCGACGTTAACCATGTCTCCGAGGTAGACGAGAAGGCCAAGGCCGCCGACTTCAAGGCCGACGCCATCGAGGCTGAGCAGGCCGAGCAAAACATGGGAGTCCTCGAGGCCGTCAAACTGTACCCCATGGCCTCCCTCTGGGCCTTCATCATGTCCACCACCATT > 371 CC1G_01485 NA membrane_transporter XP_001833808.2 NA MVENEHHNDKERKDLSTISHDSASVPGGAEGRRYETIYDEGTIDLRYLTKARILNDAIQDIGMGRYQWGLFIVTGFGWFADNLWPIVTGLIIPPTVNEFNYEPPFLKLGQNIGLLLGAAFWGVAADVWGRKISFNITLLIVGIFALAAGGSHDFVTLTSLAAVWSIGVGGNLPVDSALFLEFIPASHQYLLTILSIWWAFGQLIGSLVAWPLIKHYSCETETPGENCPRSSNMGWRYFMFAMGGLMLLWGIRFFVFKLYESPKFLMGQGKHDKAVDVIHNLARHNGTSSRISVEDLARVAASPVSEKEENGPASNRHTTASVIKRHLSKFDAHHLKALFASRRLAWSTSLLILLWALIGLAFPLYNSFVTYYLSTRGADFGDGSIDITYRNASLFRYFQAIISVIGVPGALLAGYMVELPLLGRRGTLSIFTILTGAFILASTTSRNSNALLGWNCAYSFTSNVMYGVLYALTPELFPTKDRGTGNALTASANRIFGIMAPIIALYADLTTSVPIFIAGGIFIAAGLIALLLPYESRARIPRWELQPFWEIAPLSAVVVLLPTHHHIFMHDLEPSLELPIHFMTPRHVTPRRTSDEVRCVKKPSGAEPWRRTTRRGPRMLTVDTGVVYGLEGLMADA Hymenomycetidae Coprinopsis_cinerea_okayama7#130 Coprinopsis_cinerea_okayama7#130_(Coprinus_cinereus_okayama7#130) XM_001833756 41..1954 Stajich,J.E.,_Wilke,S.K.,_Ahren,D.,_Au,C.H.,_Birren,B.W.,_Borodovsky,M.,_Burns,C.,_Canback,B.,_Casselton,L.A.,_Cheng,C.K.,_Deng,J.,_Dietrich,F.S.,_Fargo,D.C.,_Farman,M.L.,_Gathman,A.C.,_Goldberg,J.,_Guigo,R.,_Hoegger,P.J.,_Hooker,J.B.,_Huggins,A.,_James,T.Y.,_Kamada,T.,_Kilaru,S.,_Kodira,C.,_Kues,U.,_Kupfer,D.,_Kwan,H.S.,_Lomsadze,A.,_Li,W.,_Lilly,W.W.,_Ma,L.J.,_Mackey,A.J.,_Manning,G.,_Martin,F.,_Muraguchi,H.,_Natvig,D.O.,_Palmerini,H.,_Ramesh,M.A.,_Rehmeyer,C.J.,_Roe,B.A.,_Shenoy,N.,_Stanke,M.,_Ter-Hovhannisyan,V.,_Tunlid,A.,_Velagapudi,R.,_Vision,T.J.,_Zeng,Q.,_Zolan,M.E._and_Pukkila,P.J. NA 0:1914 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003307535).On_Jun_25,_2010_this_sequence_version_replaced_gi:169854266.COMPLETENESS:_incomplete_on_the_3_end. NA 28-JUN-2010 Coprinopsis_cinerea_okayama7#130_#~#_membrane_transporter,_mRNA. NA Psathyrellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Coprinopsis_cinerea_A8NHR2_COPC7.gb Coprinopsis 299740515 Proc._Natl._Acad._Sci._U.S.A._(2010)_In_press fungi XM_001833756 NA NA gill_mushrooms basidiomycetes 20547848 1914 10 mRNA NA okayama7#130 NA Coprinus_macrorhizus NA forward Agaricomycetidae NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 240176 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Agaricomycetidae,_Agaricales,_Psathyrellaceae,_Coprinopsis Insights_into_evolution_of_multicellular_fungi_from_the_assembled_chromosomes_of_the_mushroom_Coprinopsis_cinerea_(Coprinus_cinereus) NA XM_001833756.2 ATGGTCGAGAACGAACACCACAACGATAAAGAACGGAAGGACTTGTCGACAATCTCTCACGATAGCGCGTCAGTCCCTGGTGGAGCTGAAGGAAGACGGTACGAAACGATCTATGACGAGGGGACCATCGATTTGAGGTACCTGACCAAGGCGCGCATCCTGAACGACGCCATTCAGGATATTGGCATGGGAAGGTATCAATGGGGATTGTTTATTGTGACCGGGTTCGGCTGGTTCGCCGATAATCTCTGGCCGATCGTCACTGGCCTTATCATCCCACCCACTGTCAACGAGTTCAACTATGAACCCCCCTTCTTAAAACTTGGGCAAAACATCGGACTGCTGCTAGGGGCTGCGTTTTGGGGCGTCGCTGCAGATGTATGGGGTAGGAAGATCTCGTTCAACATTACCTTATTGATCGTTGGCATCTTCGCGTTGGCGGCTGGAGGGTCCCATGACTTCGTGACGCTCACATCCCTCGCAGCTGTTTGGTCGATTGGCGTGGGAGGTAATCTACCGGTCGATTCAGCCCTTTTCTTGGAATTCATTCCCGCCTCCCATCAGTACTTACTGACTATCTTATCCATCTGGTGGGCCTTCGGCCAGCTTATCGGAAGCCTGGTAGCATGGCCCCTGATCAAGCACTACTCTTGTGAAACGGAAACCCCAGGAGAGAATTGTCCCCGATCGTCAAACATGGGGTGGAGGTACTTCATGTTCGCGATGGGTGGTTTAATGTTACTTTGGGGGATTCGGTTCTTCGTATTCAAGCTATATGAAAGCCCCAAGTTTCTGATGGGTCAGGGGAAACACGATAAGGCGGTGGACGTGATTCATAACTTAGCTCGCCATAACGGGACCAGTTCGAGAATCAGCGTGGAGGACCTCGCACGCGTAGCTGCGTCCCCAGTCTCCGAGAAGGAGGAAAATGGGCCAGCGTCCAATCGTCACACCACTGCTTCAGTCATCAAGCGGCATCTTTCAAAGTTTGACGCCCACCATTTGAAGGCGCTCTTTGCCTCTCGACGATTGGCATGGTCCACGTCACTTCTGATTCTCCTTTGGGCCCTCATTGGATTGGCATTCCCGCTGTACAACAGTTTCGTGACATATTATCTTTCCACTCGGGGAGCGGATTTTGGCGATGGGTCGATCGACATCACGTACAGAAACGCGAGTCTTTTCCGATATTTCCAAGCTATTATCAGTGTCATAGGCGTTCCAGGAGCCCTCTTGGCCGGTTACATGGTCGAATTACCCCTTCTAGGAAGGAGGGGGACGCTTTCGATCTTCACCATTCTCACCGGCGCCTTTATCCTCGCTTCTACTACGTCGCGCAATTCGAATGCTCTTTTGGGTTGGAACTGTGCCTACAGCTTCACGAGCAATGTCATGTATGGCGTCTTGTACGCCTTGACCCCGGAACTCTTTCCCACCAAGGATAGGGGAACCGGCAACGCCCTTACTGCGTCGGCGAATCGTATCTTCGGAATCATGGCTCCTATTATTGCCTTATACGCAGACTTGACCACGTCCGTACCCATCTTCATTGCGGGAGGCATCTTCATCGCTGCTGGGCTCATTGCCCTGTTATTACCCTACGAGTCTCGAGCGCGTATACCGAGATGGGAACTTCAGCCATTTTGGGAAATAGCTCCGCTCTCGGCGGTCGTCGTGCTTCTTCCAACCCACCACCACATCTTCATGCACGATCTCGAGCCTAGCCTCGAGCTACCCATCCATTTCATGACACCCCGCCATGTCACGCCCAGAAGGACGTCTGACGAGGTTCGATGTGTGAAGAAGCCTTCTGGTGCGGAGCCCTGGAGAAGGACGACTAGGCGGGGTCCCAGGATGCTGACTGTGGATACAGGTGTCGTCTACGGTCTGGAAGGCCTGATGGCGGATGCTTGA > 372 CC1G_07084 NA hexose_transporter XP_001836437.1 NA MASRDLPELSIADLIDNGNWWRNRGLLFLNIALIIPLLTSVVNGLDSSLVNGLQILPAWTEYFNDPKGVLLGIVGSSQFLGNLFGLPLSPFISDWFGRRAALFGGSIIMLAGVAIQATSTSIGMFIASRVIIGFGLSFCTNAAPLLLIELAYPTHRGKVTALYNSCWYFGSILSAWVCFGAFEHAEESQWSWRIPSIMQALFPVVQVLAMWFIPESPRWLVSKGRESRAAQILAKYHANGGDERDPLVVFEMAQIRHALRLEEKINKTTSYLSLFQTPGNRRRMRLILGIGVFSQWSSQVFNFFIALGAAMLIDWCGRRTLFIISNAGMLVAFGAWTITVALFTEKDLVNAAKATIPLIFLYYFFYDLAYTPLLVSYSLEILPFRIRAKGFAFMNITIMATIAFNLFINPIALNAIGWWYYLVYCGWLIIELAFVLAFIVETRGRTLEETAAMFDGDEQSYDLIMTAGTAAKTSERSRIRRDFEQPMPFRRKHSYRPSTGESAQIFELDSKRRSDSTGSMTRNEKDRPFVAL Hymenomycetidae Coprinopsis_cinerea_okayama7#130 Coprinopsis_cinerea_okayama7#130_(Coprinus_cinereus_okayama7#130) XM_001836385 NA Stajich,J.E.,_Wilke,S.K.,_Ahren,D.,_Au,C.H.,_Birren,B.W.,_Borodovsky,M.,_Burns,C.,_Canback,B.,_Casselton,L.A.,_Cheng,C.K.,_Deng,J.,_Dietrich,F.S.,_Fargo,D.C.,_Farman,M.L.,_Gathman,A.C.,_Goldberg,J.,_Guigo,R.,_Hoegger,P.J.,_Hooker,J.B.,_Huggins,A.,_James,T.Y.,_Kamada,T.,_Kilaru,S.,_Kodira,C.,_Kues,U.,_Kupfer,D.,_Kwan,H.S.,_Lomsadze,A.,_Li,W.,_Lilly,W.W.,_Ma,L.J.,_Mackey,A.J.,_Manning,G.,_Martin,F.,_Muraguchi,H.,_Natvig,D.O.,_Palmerini,H.,_Ramesh,M.A.,_Rehmeyer,C.J.,_Roe,B.A.,_Shenoy,N.,_Stanke,M.,_Ter-Hovhannisyan,V.,_Tunlid,A.,_Velagapudi,R.,_Vision,T.J.,_Zeng,Q.,_Zolan,M.E._and_Pukkila,P.J. NA 0:1599 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003307541).COMPLETENESS:_incomplete_on_both_ends. NA 28-JUN-2010 Coprinopsis_cinerea_okayama7#130_###_hexose_transporter,_mRNA. NA Psathyrellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Coprinopsis_cinerea_A8NUE5_COPC7.gb Coprinopsis 169859597 Proc._Natl._Acad._Sci._U.S.A._(2010)_In_press fungi XM_001836385 NA NA gill_mushrooms basidiomycetes 20547848 1599 4 mRNA NA okayama7#130 NA Coprinus_macrorhizus NA forward Agaricomycetidae NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 240176 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Agaricomycetidae,_Agaricales,_Psathyrellaceae,_Coprinopsis Insights_into_evolution_of_multicellular_fungi_from_the_assembled_chromosomes_of_the_mushroom_Coprinopsis_cinerea_(Coprinus_cinereus) NA XM_001836385.1 ATGGCCAGCCGTGACCTACCTGAGCTATCCATTGCCGATCTCATTGATAATGGTAACTGGTGGAGGAATAGAGGGTTATTATTTTTGAACATCGCGCTCATTATCCCCCTCTTGACGTCCGTGGTGAATGGCTTGGATTCATCTTTGGTCAACGGTCTGCAAATCTTACCGGCATGGACTGAGTACTTCAACGATCCCAAGGGTGTGCTATTGGGCATTGTCGGGTCTTCACAGTTCCTTGGCAACTTATTCGGCCTTCCGCTCTCTCCTTTCATCTCCGACTGGTTCGGTCGTCGTGCAGCACTGTTCGGAGGTAGCATTATCATGCTTGCAGGGGTGGCCATTCAGGCAACGTCGACCAGCATCGGGATGTTCATTGCCTCACGAGTGATCATTGGTTTCGGTCTCTCGTTTTGCACAAACGCCGCCCCGTTGCTATTGATCGAGCTGGCATATCCAACACACCGCGGAAAAGTCACTGCCTTGTATAATTCTTGTTGGTATTTTGGCAGTATTCTGTCCGCATGGGTGTGCTTTGGTGCATTCGAGCATGCGGAGGAAAGCCAATGGTCCTGGCGGATCCCTAGTATTATGCAAGCCCTGTTCCCCGTCGTCCAAGTCCTCGCGATGTGGTTTATTCCTGAAAGTCCACGTTGGTTGGTCTCGAAAGGACGAGAATCTAGAGCCGCCCAAATCCTCGCCAAATATCATGCCAACGGGGGAGATGAACGCGACCCTCTTGTCGTCTTCGAAATGGCCCAGATTCGTCACGCCTTGCGCCTGGAAGAGAAGATCAACAAGACAACGTCCTACCTGTCACTTTTCCAGACCCCAGGAAACAGGCGGCGTATGCGACTGATCCTCGGGATAGGCGTGTTCTCGCAATGGAGCTCCCAGGTGTTCAATTTCTTCATCGCCCTCGGTGCCGCGATGCTCATCGATTGGTGCGGTCGACGTACACTTTTCATTATCTCCAACGCTGGCATGCTAGTCGCCTTTGGAGCTTGGACAATCACTGTGGCACTCTTTACGGAGAAAGACCTCGTCAATGCCGCCAAAGCCACAATACCACTGATATTCTTATACTACTTCTTCTACGATCTCGCCTACACTCCTTTACTCGTTTCTTATAGTTTGGAAATCCTTCCCTTTAGAATCCGTGCAAAAGGGTTCGCTTTCATGAATATCACCATCATGGCAACAATCGCCTTCAACCTCTTCATCAACCCAATTGCCCTCAATGCTATCGGCTGGTGGTACTACCTCGTGTACTGCGGTTGGCTAATTATCGAACTCGCTTTCGTCCTCGCATTCATAGTCGAAACAAGAGGCCGAACGCTCGAAGAAACAGCCGCCATGTTCGACGGAGATGAGCAGTCCTACGACCTCATAATGACCGCCGGTACAGCTGCAAAAACCTCAGAGCGCTCAAGGATTCGCCGCGACTTCGAACAACCAATGCCCTTTCGAAGAAAACACAGCTACAGGCCCAGCACGGGAGAATCCGCTCAGATATTTGAGCTGGACTCCAAAAGGCGGTCAGATAGCACAGGATCGATGACACGGAATGAAAAGGATAGGCCTTTCGTCGCACTGTAA > 373 CC1G_02630 NA sugar_transporter XP_001840167.1 NA MSTDKHLGEKAGSDHDEKVVATVAHRSVDLANNVEARIQNPLHGIPEATLLRQAEEFAIDHGLEDKVDLFKKGALLAQNPADFESIPGMTEEEKEHIRRETTHRWSQSKALYMTIVICSLAAAVQGWDQTGSNGANLSFPKEFGIYTEDENDPNKDRYDWIVGIVNAGPYLATWAIGCWLTDPLNHFFGRRGTLFWCGIFCTFTVIGQGLAQTWPQLFVCRLLLGLGMGPKATTSPVFAAENVPANIRGGLVMCWQMWTAFGIFLGFSANLAVHKLGDIAWRLELGSAFIPAVPLTIGIYFCPESPRWLMKNGRYKKAFRSFVRLRNSELQAARDMYYVHCQLVEEFKVLKGSNYFTRFYELFTVPRVRRATLASWVVMIAQQMCGINIIAFYSSTIFRNAGYSMTQALFASWGFGLVNWVFAFPAVWTIDTFGRRNLLLFTFPNMAWTLLAAGFCFFIPEDSPARVPCVALFIFIFAAFYSPGEGPVPFTYSAEVFPLTHREMGMSWAVATNFFWASVLSLTFPRMLSAFGSVGAFGFYAGLNVMAFIMIFFLMPETKQRTLEELDYVFAVPVAQHAKYQLSEFLPYWIRRWVLFRKDAKLRPLYDFEEVEGRRASDEKTSSV Hymenomycetidae Coprinopsis_cinerea_okayama7#130 Coprinopsis_cinerea_okayama7#130_(Coprinus_cinereus_okayama7#130) XM_001840115 43..1917 Stajich,J.E.,_Wilke,S.K.,_Ahren,D.,_Au,C.H.,_Birren,B.W.,_Borodovsky,M.,_Burns,C.,_Canback,B.,_Casselton,L.A.,_Cheng,C.K.,_Deng,J.,_Dietrich,F.S.,_Fargo,D.C.,_Farman,M.L.,_Gathman,A.C.,_Goldberg,J.,_Guigo,R.,_Hoegger,P.J.,_Hooker,J.B.,_Huggins,A.,_James,T.Y.,_Kamada,T.,_Kilaru,S.,_Kodira,C.,_Kues,U.,_Kupfer,D.,_Kwan,H.S.,_Lomsadze,A.,_Li,W.,_Lilly,W.W.,_Ma,L.J.,_Mackey,A.J.,_Manning,G.,_Martin,F.,_Muraguchi,H.,_Natvig,D.O.,_Palmerini,H.,_Ramesh,M.A.,_Rehmeyer,C.J.,_Roe,B.A.,_Shenoy,N.,_Stanke,M.,_Ter-Hovhannisyan,V.,_Tunlid,A.,_Velagapudi,R.,_Vision,T.J.,_Zeng,Q.,_Zolan,M.E._and_Pukkila,P.J. NA 0:1875 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003307541).On_Jun_25,_2010_this_sequence_version_replaced_gi:169867171.COMPLETENESS:_incomplete_on_the_3_end. NA 28-JUN-2010 Coprinopsis_cinerea_okayama7#130_###_sugar_transporter,_mRNA. NA Psathyrellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Coprinopsis_cinerea_A8PBF0_COPC7.gb Coprinopsis 299748815 Proc._Natl._Acad._Sci._U.S.A._(2010)_In_press fungi XM_001840115 NA NA gill_mushrooms basidiomycetes 20547848 1875 4 mRNA NA okayama7#130 NA Coprinus_macrorhizus NA forward Agaricomycetidae NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 240176 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Agaricomycetidae,_Agaricales,_Psathyrellaceae,_Coprinopsis Insights_into_evolution_of_multicellular_fungi_from_the_assembled_chromosomes_of_the_mushroom_Coprinopsis_cinerea_(Coprinus_cinereus) NA XM_001840115.2 ATGTCTACCGACAAGCATTTAGGAGAGAAAGCGGGCAGCGATCATGATGAGAAGGTTGTCGCCACTGTGGCTCATCGCTCGGTCGATCTCGCCAACAACGTAGAGGCACGGATCCAGAATCCGCTGCATGGTATCCCGGAGGCTACCCTCCTCAGGCAGGCTGAGGAGTTCGCCATTGATCATGGTTTGGAGGACAAAGTTGACCTCTTCAAGAAGGGCGCCCTCCTCGCTCAAAACCCTGCCGATTTTGAATCCATTCCTGGAATGACGGAGGAGGAAAAGGAACATATCCGGCGGGAGACCACTCATCGCTGGAGTCAATCAAAGGCTCTCTACATGACGATCGTGATTTGCAGTTTGGCTGCTGCAGTGCAGGGTTGGGATCAAACAGGTTCCAATGGCGCCAACTTGTCATTCCCCAAGGAGTTTGGAATTTATACAGAGGATGAGAATGACCCGAACAAGGACAGATATGATTGGATTGTGGGTATCGTTAACGCGGGACCCTATCTCGCCACTTGGGCCATCGGTTGCTGGCTGACAGATCCTCTGAACCATTTCTTTGGTCGACGTGGGACGTTGTTTTGGTGTGGTATCTTCTGCACGTTCACCGTCATTGGACAAGGTTTGGCCCAGACCTGGCCTCAGCTTTTCGTTTGCCGACTTCTCCTGGGACTTGGTATGGGGCCGAAAGCCACCACATCTCCCGTCTTTGCCGCAGAGAATGTCCCTGCCAACATCCGTGGTGGTCTCGTCATGTGTTGGCAAATGTGGACTGCTTTTGGTATCTTCCTCGGCTTCTCCGCCAACTTGGCTGTGCACAAACTAGGCGATATTGCCTGGCGCTTAGAGCTGGGTTCTGCCTTCATTCCTGCCGTACCGTTGACGATCGGAATCTACTTCTGCCCTGAATCGCCGCGTTGGTTGATGAAGAATGGACGATACAAGAAAGCCTTCCGATCCTTTGTTCGACTCCGGAATAGCGAGCTGCAGGCTGCTCGCGACATGTACTATGTCCATTGCCAACTGGTCGAAGAGTTCAAGGTCCTGAAGGGCTCCAACTATTTCACTCGATTCTACGAGCTCTTTACTGTCCCTCGTGTCCGCCGCGCGACCCTGGCCAGCTGGGTCGTCATGATTGCCCAGCAAATGTGCGGTATCAATATTATCGCGTTCTACTCGTCCACCATCTTCCGAAATGCCGGCTACTCAATGACTCAAGCTCTTTTTGCTTCCTGGGGCTTTGGATTGGTGAATTGGGTCTTCGCTTTTCCGGCGGTGTGGACCATTGATACCTTTGGTCGAAGGAACTTGCTGCTGTTCACATTCCCCAACATGGCGTGGACACTGCTTGCCGCTGGTTTTTGTTTCTTCATTCCCGAAGATAGTCCAGCTCGAGTTCCTTGTGTCGCACTTTTCATCTTCATCTTTGCAGCCTTCTACTCTCCTGGTGAAGGACCTGTGCCCTTTACTTACTCTGCCGAAGTCTTCCCTCTGACGCACAGAGAAATGGGAATGTCCTGGGCCGTCGCCACGAACTTTTTCTGGGCATCCGTCCTCTCCCTGACGTTCCCTCGCATGCTGTCTGCGTTCGGGTCTGTCGGTGCATTTGGGTTCTACGCAGGGCTGAACGTCATGGCGTTCATCATGATCTTCTTCCTTATGCCAGAAACGAAGCAGAGAACGCTGGAGGAGCTCGACTACGTCTTCGCCGTTCCAGTCGCACAACATGCCAAGTACCAACTGTCGGAATTCTTGCCTTACTGGATTCGACGTTGGGTCTTGTTCAGGAAGGACGCCAAGCTCCGACCACTTTACGACTTTGAAGAAGTCGAAGGTCGTCGTGCGAGCGATGAAAAAACATCTTCTGTGTAA > 374 HMPREF0281_01011 KEGG:_rcm:A1E_04550_2.4e-19_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 major_facilitator_family_transporter EFG81649.1 11 MTAEHKRVLAGSMVGTTIEWFDFFIYAQAAGLIFAAQFFDPVSNANPSLAQIISWASLGISFLFRPLGAVLAGHLGDRMGRKPVLVITLLGMGAATMLMGLLPTYHAIGIAAPILLVLLRILQGMSAGGEWGGAALLTVEHAPHGRRGFFGAFPQIGVPTGMALATIFMLILSSILTTEEFLAWGWRIPFLSSVVLIIVGYFIRRTVEESPAFEEMQELKKDSSAPLAVLFKNHWATVLKCALIFAANNAIGYFVIAYFISYGTKYIGYERTDALAVALAGAAAWLVSTLYFGKLSDRVGRKRTFLIGYIFLAIWSVPMWLLVDTGNVAMFYLAVIVVGFLLGPTYGPMCALFAEMFPVKVRLSGVSIGYAIGSIIGGAFAPMLAEILYTTYNTSMAIAAYCVVITIISLIGVLLVPKGIQDKDLHV high_GC_Gram+ Corynebacterium_ammoniagenes_DSM_20306 Corynebacterium_ammoniagenes_DSM_20306 ADNS01000007 39272..40555 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1284 Corynebacterium_ammoniagenes_DSM_20306_(No_16S_rRNA_gene_available)is_a_member_of_the_Actinobacteria_division_of_the_domain_bacteriaand_has_been_isolated_from_the_feces_of_an_infant.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_Jumpstart_(NIH)_is_funding_the_sequencecharacterization_of_the_Corynebacterium_ammoniagenes_DSM_20306genome.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC._SourceDNA_provided_by_Prof._Elmar_Heinzle_(Universitat_des_Saarlandes,Technische_Biochemie,_Campus_A1.5,_D-66123_Saarbruecken,Deutschland),_obtained_from_DSMZ_(Deutsche_Sammlung_vonMikroorganismen_und_Zellkulturen_GmbH,_Inhoffenstrasse_7_B,_38124Braunschweig,_Germany),_funded_by_Saarland_University,_Saarbrucken,Germany.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.59Genome_Coverage_::_76.5xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 11-MAY-2010 Corynebacterium_ammoniagenes_DSM_20306_C_ammoniagenes-1.0_Cont6.1,_whole_genome_shotgun_sequence. NA Coryneform_bacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Corynebacterium_ammoniagenes_D5NWQ1_CORAM.gb Corynebacterium_Lehmann_and_Neumann_1896_(Approved_Lists_1980)_emend._Bernard_et_al._2010 295968362 Submitted_(22-APR-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADNS01000007 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1284 NA genomic_DNA NA DSM_20306 NA Corynebacterium_ammoniigenes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 649754 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Corynebacteriaceae,_Corynebacterium Direct_Submission NA ADNS01000007.1 CTAAACGTGGAGGTCTTTGTCCTGGATGCCCTTGGGCACAAGGAGTACGCCGATCAGCGAGATAATAGTGATGACCACGCAGTAGGCGGCAATGGCCATCGAGGTGTTGTAGGTGGTGTAGAGAATTTCTGCGAGCATCGGAGCGAAAGCGCCGCCGATAATCGAGCCGATGGCGTAACCGATGGATACTCCGGACAGGCGCACCTTAACGGGAAACATCTCAGCAAAAAGTGCGCACATCGGGCCGTAGGTAGGGCCGAGTAAGAAGCCGACGACGATAACGGCGAGGTAGAACATCGCAACATTGCCGGTGTCAACGAGCAACCACATGGGCACGGACCAGATGGCGAGGAAGATATAGCCGATGAGGAAGGTGCGCTTGCGGCCGACGCGGTCGGAGAGTTTGCCGAAGTACAAGGTGGAGACCAGCCAGGCGGCGGCGCCGGCGAGCGCTACGGCGAGGGCATCGGTGCGTTCATAGCCGATGTACTTGGTGCCGTAGGAGATGAAATACGCGATAACGAAGTAGCCGATGGCGTTATTGGCGGCGAAGATCAGGGCGCACTTGAGCACGGTGGCCCAGTGGTTTTTAAATAGCACGGCCAAAGGTGCGGAGGAATCCTTCTTGAGCTCTTGCATCTCTTCGAAGGCGGGAGATTCCTCCACGGTGCGGCGGATGAAGTAGCCGACGATGATCAGCACGACCGAGGAGAGGAAGGGGATGCGCCAGCCCCAGGCGAGGAACTCCTCTGTGGTTAAGATGCTGGATAAAATCAGCATGAAGATGGTGGCTAGCGCCATGCCCGTGGGCACACCGATTTGTGGGAAGGCGCCGAAGAATCCGCGGCGACCGTGTGGGGCGTGCTCCACGGTCAGCAGTGCGGCACCGCCCCATTCGCCGCCAGCGGACATGCCTTGCAGGATGCGCAGCAGCACCAACAAGATGGGGGCGGCGATGCCGATGGCGTGATAGGTCGGCAAAAGCCCCATCAACATGGTGGCTGCACCCATGCCCAGCAAGGTGATAACAAGTACGGGTTTGCGGCCCATGCGGTCACCGAGGTGACCGGCTAAGACTGCGCCGAGCGGGCGGAAGAGGAAAGAAATACCCAGCGACGCCCACGAGATGATCTGGGCCAGCGAGGGGTTCGCATTGCTGACGGGGTCAAAGAACTGTGCAGCAAAAATGAGTCCTGCTGCTTGGGCGTAGATGAAAAAGTCGAACCATTCAATGGTGGTTCCAACCATGGAACCGGCAAGCACGCGTTTGTGTTCAGCGGTCAT > 375 HMPREF0281_01853 KEGG:_rcm:A1E_04550_3.5e-21_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 major_facilitator_family_transporter EFG80979.1 11 MTEVTSGRQGQIDPLPPKATNTPIVRESTDKQRRKVLASSFLGSMVEYYDFLLYGAAAGLVFPHLFFDESMSPFIGMILSYTILFAGYLARPVGGLIFGHLGDRYGRKNILLITLIGMGLVSVAIGLLPTYSTIGVAAPVILVLLRVIQGIAVGGEWAGATLMAAEHAQAKSRGFAASIAVSGAPAGAVLSTLVLAIFSGLPEEQFMSWGWRVPFLLSALLVVIGLYMRYSLTESPEFEAARHSGQVKTGVPLKRIFTDYPKQTILASLAITGPLFMQALMAVFIVPYVVSTGAMEQQPALMLLTFSAFLHIFAIPFFAWLSDRFGRRRTMISAALLSIALIFPMFAAFNSGNAFLIALGFIIGNPIIQASMYGPVGAFLADKYAPQDRYTGVSVSYQLGSVLGAGLAPLVSTALVELDNDLGSTNIAIYFIFLMIVAAISVWFVERKENNVVLPVTTAEPQPAPTSN high_GC_Gram+ Corynebacterium_ammoniagenes_DSM_20306 Corynebacterium_ammoniagenes_DSM_20306 ADNS01000017 66571..67977 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1407 Corynebacterium_ammoniagenes_DSM_20306_(No_16S_rRNA_gene_available)is_a_member_of_the_Actinobacteria_division_of_the_domain_bacteriaand_has_been_isolated_from_the_feces_of_an_infant.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_Jumpstart_(NIH)_is_funding_the_sequencecharacterization_of_the_Corynebacterium_ammoniagenes_DSM_20306genome.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC._SourceDNA_provided_by_Prof._Elmar_Heinzle_(Universitat_des_Saarlandes,Technische_Biochemie,_Campus_A1.5,_D-66123_Saarbruecken,Deutschland),_obtained_from_DSMZ_(Deutsche_Sammlung_vonMikroorganismen_und_Zellkulturen_GmbH,_Inhoffenstrasse_7_B,_38124Braunschweig,_Germany),_funded_by_Saarland_University,_Saarbrucken,Germany.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.59Genome_Coverage_::_76.5xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 11-MAY-2010 Corynebacterium_ammoniagenes_DSM_20306_C_ammoniagenes-1.0_Cont22.1,_whole_genome_shotgun_sequence. NA Coryneform_bacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Corynebacterium_ammoniagenes_D5NZ18_CORAM.gb Corynebacterium_Lehmann_and_Neumann_1896_(Approved_Lists_1980)_emend._Bernard_et_al._2010 295967650 Submitted_(22-APR-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADNS01000017 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1407 NA genomic_DNA NA DSM_20306 NA Corynebacterium_ammoniigenes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 649754 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Corynebacteriaceae,_Corynebacterium Direct_Submission NA ADNS01000017.1 ATGACAGAAGTGACGAGCGGTAGGCAAGGACAGATCGATCCACTACCCCCCAAGGCCACAAACACTCCAATTGTTCGTGAGTCAACTGATAAGCAGCGTCGGAAAGTCCTCGCTTCCAGTTTCCTTGGCTCCATGGTGGAATATTACGACTTCCTGCTCTACGGAGCCGCTGCTGGATTAGTCTTCCCACATCTTTTCTTTGATGAATCGATGAGTCCCTTTATCGGGATGATTTTGTCGTACACCATTTTGTTCGCAGGCTACTTGGCACGTCCCGTCGGTGGCTTAATCTTCGGTCACCTTGGTGACCGTTACGGTCGCAAGAATATCCTGCTTATCACACTCATCGGTATGGGCTTAGTTTCCGTCGCCATTGGCCTGCTACCCACGTACTCAACTATTGGTGTCGCAGCCCCTGTCATTTTGGTACTGCTTCGCGTCATTCAAGGTATCGCCGTTGGCGGCGAGTGGGCCGGCGCAACGCTCATGGCAGCCGAGCACGCGCAAGCAAAGTCACGAGGTTTTGCGGCTTCGATTGCAGTCTCAGGAGCACCTGCCGGTGCGGTTCTTTCCACACTGGTTTTGGCCATCTTCTCTGGACTCCCCGAAGAGCAATTCATGTCGTGGGGCTGGCGTGTTCCATTTCTCTTGTCCGCACTGCTAGTCGTCATCGGCTTGTACATGCGATACTCGCTCACCGAATCGCCAGAATTCGAAGCTGCCCGCCACTCTGGTCAGGTGAAAACTGGCGTTCCGCTCAAACGAATCTTCACCGATTACCCGAAACAAACCATCCTGGCTTCGTTGGCCATCACTGGCCCACTGTTCATGCAAGCTCTAATGGCAGTATTTATCGTGCCCTACGTTGTTAGTACGGGCGCCATGGAACAACAGCCTGCCTTAATGCTGCTCACCTTCTCTGCGTTCTTGCATATCTTTGCAATTCCGTTTTTCGCATGGCTCTCAGACCGTTTCGGACGTCGTCGGACGATGATTAGCGCGGCTCTTCTCTCCATCGCCCTCATTTTCCCGATGTTCGCTGCTTTCAACTCCGGCAATGCTTTCCTCATCGCCCTCGGCTTCATCATCGGTAATCCCATCATCCAAGCTTCCATGTACGGACCAGTAGGCGCTTTCTTGGCAGATAAGTACGCACCGCAGGATCGCTATACCGGAGTCTCAGTCTCGTATCAGCTCGGGTCTGTCCTTGGTGCAGGCCTCGCGCCATTGGTTTCTACTGCATTAGTCGAACTCGACAATGACTTGGGCTCCACCAACATTGCTATCTACTTCATCTTCCTGATGATCGTCGCTGCAATTTCTGTCTGGTTCGTCGAACGCAAAGAAAACAACGTGGTTCTCCCTGTCACGACCGCCGAGCCACAGCCCGCGCCAACCTCAAACTAA > 376 cauri_1016 Permeases_of_the_major_facilitator_superfamily high-affinity_glucose_transporter YP_002834551.1 11 MKNTAEPQVKIPREIWVMVTAGFIIALGYGLIAPLLPQFIVSFDVSMAAAGLVVSVFSASRLVFAPAAGFLIDRVGTRRVYVTGLFTVAVTTGLVGVAQEYWQIVALRTIAGIGSTMFTVAAMGLIVRLAPPSIRGRCSATYATSFLLGNVIGPLVGASLSFLGFRWPFFIYGVGVAIAALVVWILMPSVNEADERRRHLTPMRLEEAWEDTAYRAVLTSNFAQGWINMGVRVAVLPLFAAAIFANGASTSGVALAAFAAGNAIVLQFSGSWSDRVGRRPLIVAGLVGSALFVGTLGLATNIVSLLILSALSGAASGLIAPSQQAAVADIVGSKRSGGQVLSTFQMAGDFGQILGPIVIGLLADKYGFETAFGFCAVVAAAGVVAWIFGRDTLGERKGILHGLRRRYRPRR high_GC_Gram+ Corynebacterium_aurimucosum_ATCC_700975 Corynebacterium_aurimucosum_ATCC_700975 NC_012590 1124916..1126151 Trost,E.,_Gotker,S.,_Schneider,J.,_Schneiker-Bekel,S.,_Szczepanowski,R.,_Tilker,A.,_Viehoever,P.,_Arnold,W.,_Bekel,T.,_Blom,J.,_Gartemann,K.H.,_Linke,B.,_Goesmann,A.,_Puhler,A.,_Shukla,S.K._and_Tauch,A. NA 0:1236 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001601.Strain_is_available_at_the_German_Resource_Center_for_BiologicalMaterial_(http://www.dsmz.de/).COMPLETENESS:_full_length. NA 25-JAN-2012 Corynebacterium_aurimucosum_ATCC_700975,_complete_genome. NA Coryneform_bacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Corynebacterium_aurimucosum_C3PFK9_CORA7.gb Corynebacterium_Lehmann_and_Neumann_1896_(Approved_Lists_1980)_emend._Bernard_et_al._2010 227831830 BMC_Genomics_11,_91_(2010) NA NC_012590 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 20137072 1236 NA genomic_DNA NA DSM_44827;_ATCC_700975 NA Corynebacterium_sp._CN-1 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 548476 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Corynebacteriaceae,_Corynebacterium Complete_genome_sequence_and_lifestyle_of_black-pigmented_Corynebacterium_aurimucosum_ATCC_700975_(formerly_C._nigricans_CN-1)_isolated_from_a_vaginal_swab_of_a_woman_with_spontaneous_abortion NA NC_012590.1 ATGAAAAATACTGCAGAACCGCAGGTAAAAATCCCGCGGGAAATTTGGGTCATGGTCACCGCCGGGTTCATCATTGCCTTGGGGTACGGGCTCATTGCACCGCTGCTGCCGCAGTTCATCGTCAGCTTCGACGTCTCAATGGCCGCAGCAGGCCTCGTAGTCTCCGTCTTTTCTGCTAGCCGCCTTGTCTTCGCACCCGCCGCTGGGTTCCTCATCGACCGCGTGGGCACGCGCCGCGTCTACGTGACCGGCCTGTTCACCGTGGCGGTGACCACCGGCCTGGTGGGCGTGGCGCAGGAGTACTGGCAGATCGTCGCGCTGCGCACTATCGCCGGCATTGGCTCGACGATGTTCACCGTCGCGGCCATGGGCCTCATTGTGCGCCTGGCACCACCCAGCATTCGCGGACGGTGTTCGGCCACCTATGCCACGTCTTTCCTCCTTGGCAATGTGATTGGCCCGCTCGTGGGTGCGAGCCTCTCTTTCTTAGGATTCCGCTGGCCCTTCTTCATCTACGGCGTGGGCGTCGCCATCGCCGCGCTCGTTGTATGGATTCTCATGCCCTCGGTCAATGAGGCCGATGAACGTCGGCGCCACCTAACACCAATGCGCTTGGAGGAAGCCTGGGAGGATACTGCATACCGCGCAGTGCTGACGTCGAACTTCGCCCAGGGCTGGATTAACATGGGTGTGCGCGTAGCGGTCCTGCCACTGTTCGCGGCCGCCATCTTTGCCAACGGCGCATCCACATCGGGCGTTGCGCTAGCGGCCTTTGCCGCGGGCAACGCCATCGTTCTGCAGTTCTCCGGCTCCTGGTCAGACCGCGTGGGGCGCCGTCCACTCATCGTTGCGGGCCTTGTGGGCTCCGCGTTGTTCGTGGGCACGCTGGGCTTGGCGACGAACATCGTCTCCCTCCTCATCCTCTCCGCCCTGTCCGGCGCGGCTTCAGGCCTTATTGCCCCCTCGCAGCAAGCAGCCGTAGCGGATATCGTCGGCTCAAAGCGCTCGGGCGGCCAGGTGCTGTCGACATTTCAGATGGCAGGTGACTTCGGGCAAATCCTAGGCCCCATCGTCATTGGACTGCTGGCGGATAAGTACGGGTTTGAGACTGCCTTTGGCTTCTGTGCGGTAGTGGCTGCAGCCGGTGTCGTGGCGTGGATTTTCGGCCGCGACACCTTGGGGGAGAGAAAAGGTATCCTGCACGGCCTGCGCCGCCGCTACCGCCCACGGCGATAA > 377 cauri_2115 NA permease_of_the_major_facilitator_superfamily YP_002835646.1 11 MNKDTYVMMVAGVAALGGLLFGYDTGVMSGALLFVGPEFGMSAHEEGLVTSMLLVGAAVGALAAGRVASMIGRRRTLIAGGLIFVAGSVWCALANSAAELATARTFLGVAVGAVSIVSPMYISEITPAAVRGRMVSLNTLMIVVGQLLAYGVNSLLAASGSWHWMLGLAAVPGAALALGMVFLPDTPAWLAAQGRTGQAAAVSARVGARGAELEHSARPSTGEWQALRRHRWMRWAIALAMLMGLTQQITGVNAIVYFAPTMMNQVGISTTNSVYTSMVIGVVSVAACLVGMRVIDRLGRRRLLLAGLSGNVVSLVVLAVAYHFAHDSTPLAMLALACMAAFIAFQQAAVSPATWLLMSEIVPPEVRGLGMGIAGLALWVSNWAVAQFFLPVVEWLGGSLGFGIFAGLGLVAVGYTRALVPETAGKSLEDVAEQFRSRYSES high_GC_Gram+ Corynebacterium_aurimucosum_ATCC_700975 Corynebacterium_aurimucosum_ATCC_700975 NC_012590 2304335..2305663 Trost,E.,_Gotker,S.,_Schneider,J.,_Schneiker-Bekel,S.,_Szczepanowski,R.,_Tilker,A.,_Viehoever,P.,_Arnold,W.,_Bekel,T.,_Blom,J.,_Gartemann,K.H.,_Linke,B.,_Goesmann,A.,_Puhler,A.,_Shukla,S.K._and_Tauch,A. NA 0:1329 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001601.Strain_is_available_at_the_German_Resource_Center_for_BiologicalMaterial_(http://www.dsmz.de/).COMPLETENESS:_full_length. NA 25-JAN-2012 Corynebacterium_aurimucosum_ATCC_700975,_complete_genome. NA Coryneform_bacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Corynebacterium_aurimucosum_C3PIQ4_CORA7.gb Corynebacterium_Lehmann_and_Neumann_1896_(Approved_Lists_1980)_emend._Bernard_et_al._2010 227831830 BMC_Genomics_11,_91_(2010) NA NC_012590 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 20137072 1329 NA genomic_DNA NA DSM_44827;_ATCC_700975 NA Corynebacterium_sp._CN-1 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 548476 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Corynebacteriaceae,_Corynebacterium Complete_genome_sequence_and_lifestyle_of_black-pigmented_Corynebacterium_aurimucosum_ATCC_700975_(formerly_C._nigricans_CN-1)_isolated_from_a_vaginal_swab_of_a_woman_with_spontaneous_abortion NA NC_012590.1 TCAGCTTTCGGAGTAGCGGGAGCGAAACTGTTCGGCAACATCCTCGAGGCTCTTCCCCGCCGTTTCCGGAACGAGTGCGCGGGTATACCCCACCGCAACGAGGCCTAAGCCCGCAAAGATTCCGAAGCCCAGCGAGCCGCCGAGCCACTCGACCACCGGCAAGAAGAACTGCGCCACCGCCCAGTTACTCACCCACAACGCCAGCCCGGCGATTCCCATGCCCAAGCCGCGGACTTCGGGCGGCACGATTTCTGACATGAGCAGCCACGTGGCCGGGGAGACCGCCGCCTGTTGGAAGGCAATGAACGCCGCCATGCACGCCAGCGCCAACATAGCCAGTGGTGTGGAATCATGAGCGAAGTGATAAGCCACAGCTAGGACCACGAGCGAAACAACGTTGCCGCTTAAGCCTGCTAGCAATAGCCGGCGGCGCCCCAGCCGGTCGATCACGCGCATGCCTACTAGGCACGCCGCGACGGACACCACACCGATCACCATCGACGTATACACCGAGTTGGTGGTGGAGATACCCACCTGGTTCATCATCGTGGGTGCGAAGTACACGATGGCGTTGACGCCCGTAATCTGCTGGGTCAGGCCCATGAGCATGGCAAGCGCGATGGCCCAACGCATCCAGCGGTGGCGTCGCAAAGCTTGCCATTCACCCGTGCTCGGCCGCGCGCTATGTTCCAGCTCCGCTCCCCGCGCGCCTACCCGAGCGCTGACCGCGGCAGCTTGGCCCGTTCGGCCTTGTGCCGCGAGCCACGCCGGGGTATCGGGGAGAAAGACCATGCCGAGCGCCAGCGCCGCACCCGGAACCGCGGCCAGCCCGAGCATCCAATGCCAGCTGCCGCTTGCAGCCAACAGCGAGTTCACCCCGTACGCAAGCAGCTGCCCGACGACGATCATGAGCGTGTTGAGGGAGACCATCCGACCCCGTACAGCCGCCGGGGTGATTTCGGAGATGTACATCGGGGAGACGATGGACACCGCGCCCACCGCCACGCCAAGGAATGTGCGGGCGGTAGCAAGTTCCGCGGCCGAGTTTGCGAGCGCACACCACACGGAACCAGCCACGAAGATGAGTCCGCCGGCAATGAGGGTTCGGCGTCGCCCGATCATGCTCGCCACACGCCCAGCCGCCAGCGCACCGACTGCCGCTCCAACCAACAGCATCGAGGTCACGAGTCCTTCCTCGTGGGCGGACATACCGAATTCCGGCCCTACGAAGAGGAGAGCACCAGACATCACTCCGGTGTCGTATCCAAAGAGCAGGCCGCCCAGGGCGGCTACGCCTGCGACCATCATGACGTAAGTATCTTTGTTCAC > 378 DIP2287 Similar_to_Deinococcus_radiodurans_sugar_transporter,_DRA0271_SWALL:Q9RYN9_(EMBL:AE001863)_(454_aa)_fasta_scores:_E():_9.2e-54,_41.12%_id_in_445_aa,_and_to_Pseudomonas_putida_4-hydroxybenzoate_transporter_PcaK_SWALL:PCAK_PSEPU_(SWALL:Q51955)_(448_aa)_fasta_scores:_E():_1.8e-25,_30.4%_id_in_398_aa integral_membrane_transport_protein NP_940589.1 11 MLDAQQSPPLTRNQRLDRLPLNSQHKRLLVGSGLGWALDAMDVGLISFVMAALIKHWGLTHGQTSVLASAGFVGMAIGATFGGLLADKWGRRNVFALTLLVYGLATGASALAGGLAVLIVLRFIVGLGLGAELPVASTLVSEFAPLRHRGRLVVILEAFWAVGWILAAIIGAFVVSASDSGWRWALVLGCVPALYSAYVRSSLPESVRFLEARGRHDEAEAAVQQFEKASATIPDTPVIATEDPADQADSIFAPNMRRRTFGLWTVWFCINLSYYGAFIWIPSLLVADGFSLVKSFQFTLIITLAQFPGYALAAWLIEIWGRRTTLAVFLLGSAGSAALYGFADTTALIIAAGCCLSFFNLGAWGALYAISPELYPSQIRGTGTGSAAGFGRIASIIAPLIVPPIVAAAGTPALFALFGAAFLAAAIAAFTLPEQRGKALV high_GC_Gram+ Corynebacterium_diphtheriae_NCTC_13129 Corynebacterium_diphtheriae_NCTC_13129 NC_002935 2383456..2384781 Cerdeno-Tarraga,A.M.,_Efstratiou,A.,_Dover,L.G.,_Holden,M.T.,_Pallen,M.,_Bentley,S.D.,_Besra,G.S.,_Churcher,C.,_James,K.D.,_De_Zoysa,A.,_Chillingworth,T.,_Cronin,A.,_Dowd,L.,_Feltwell,T.,_Hamlin,N.,_Holroyd,S.,_Jagels,K.,_Moule,S.,_Quail,M.A.,_Rabbinowitsch,E.,_Rutherford,K.M.,_Thomson,N.R.,_Unwin,L.,_Whitehead,S.,_Barrell,B.G._and_Parkhill,J. NA 0:1326 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_BX248353.On_Nov_10,_2003_this_sequence_version_replaced_gi:20070482.COMPLETENESS:_full_length. NA 21-JAN-2012 Corynebacterium_diphtheriae_NCTC_13129_chromosome,_complete_genome. NA Coryneform_bacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Corynebacterium_diphtheriae_Q6NEI7_CORDI.gb Corynebacterium_Lehmann_and_Neumann_1896_(Approved_Lists_1980)_emend._Bernard_et_al._2010 38232642 Nucleic_Acids_Res._31_(22),_6516-6523_(2003) NA NC_002935 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 14602910 1326 NA genomic_DNA NA NCTC13129 NA Pacinia_loeffleri NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 257309 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Corynebacteriaceae,_Corynebacterium The_complete_genome_sequence_and_analysis_of_Corynebacterium_diphtheriae_NCTC13129 NA NC_002935.2 GTGCTAGACGCTCAACAAAGTCCACCACTTACCCGCAACCAGCGCCTCGACCGGTTGCCACTGAATAGTCAACACAAACGCCTCCTCGTCGGGTCCGGCCTCGGCTGGGCCCTCGACGCCATGGACGTCGGCCTGATCTCCTTCGTCATGGCAGCCCTGATCAAACACTGGGGACTCACCCACGGCCAAACATCCGTACTGGCATCAGCAGGATTCGTCGGCATGGCCATCGGCGCCACCTTCGGCGGCCTCCTTGCAGACAAGTGGGGGCGTCGCAACGTATTCGCCCTCACCCTCCTCGTCTACGGACTTGCCACCGGCGCCTCCGCGCTAGCCGGTGGCCTCGCTGTATTGATCGTGCTGCGATTCATCGTCGGACTTGGCCTCGGCGCCGAACTCCCCGTGGCCTCCACCCTCGTCTCCGAATTCGCACCACTGCGCCACCGCGGCCGCCTCGTCGTCATCCTCGAAGCCTTCTGGGCCGTCGGCTGGATCCTCGCCGCCATCATCGGCGCCTTCGTCGTCTCCGCCTCCGACTCCGGCTGGCGCTGGGCGCTCGTCCTAGGCTGTGTGCCCGCTCTCTACTCCGCCTACGTGCGCAGCTCATTACCCGAATCCGTCCGCTTCCTCGAAGCCCGCGGCCGCCACGACGAAGCCGAAGCCGCCGTCCAACAATTCGAAAAAGCCAGTGCAACCATCCCCGACACCCCCGTCATCGCAACCGAAGACCCCGCCGACCAAGCAGACTCCATCTTCGCCCCCAACATGCGCCGCCGCACCTTCGGCCTATGGACAGTCTGGTTCTGCATCAACCTGTCCTACTACGGGGCATTCATCTGGATCCCATCCCTACTGGTTGCCGACGGCTTCTCCTTGGTCAAATCCTTCCAGTTCACGCTGATTATCACCCTGGCCCAATTCCCAGGCTACGCACTAGCCGCATGGCTCATCGAAATCTGGGGCCGCCGCACCACACTGGCAGTATTCCTCCTCGGCTCCGCCGGCTCCGCAGCCCTCTACGGATTTGCCGACACCACAGCCTTGATCATCGCCGCCGGTTGCTGTCTCTCCTTCTTCAACCTCGGCGCGTGGGGCGCGCTCTACGCCATCAGCCCAGAACTCTACCCCTCTCAAATCCGCGGCACCGGCACCGGATCAGCAGCAGGATTCGGCCGTATCGCGTCCATCATCGCACCGCTGATCGTTCCCCCCATCGTGGCCGCCGCAGGCACCCCAGCGCTCTTCGCACTCTTCGGGGCCGCCTTCCTTGCAGCAGCCATCGCCGCATTCACCCTGCCCGAACAACGCGGCAAGGCCCTCGTCTAG > 379 DIP2166 Similar_to_Amycolatopsis_orientalis_integral_membrane_sugar_transporter_CZA382.17c_TR:Q9XBD4_(EMBL:AL078635)_(444_aa)_fasta_scores:_E():_3.8e-43,_37.264%_id_in_424_aa,_and_to_Burkholderia_cepacia_MopB_protein_TR:Q45082_(EMBL:U29532)_(449_aa)_fasta_scores:_E():_1.2e-40,_35.885%_id_in_418_aa ABC_transporter_permease NP_940476.1 11 MFINISMKNCNESLTPQGRRALLAALLGTIIEWYDYALYGAAAAVVIAPLFFESSAAGGQLAAFATFAVGFVARPLGGVAIGHIGDRFGRRPAMILSVLMMGIATVGIGLLPTEAAIGVLAPVLLVFFRLIQGLGAGAELAGAMTVVAEFAPAAKRGLFTSLVLAMPPAGIVLATAAFMGASSVGDEALLGGVWRIPFLISALLFFIALFMRKRLEETPEYVAAMEERSEQAKHQSLPVVELLKSHKRQVALGFLSITGHNALNYAMAVFAISFMTSDAVGMAKFDALLAVSAGTLVGVVATPLGGLASDRFGADRVLATGSLIGAFYAVPFLLGLQTGDAVIAALTVAFGYGAVISLTSGSQGAFLAGLFQARARFSGIALARETNGALIAGFTPLVLTWILHASGGNVLAAGAVVSASLLVSFVSIMVAMRR high_GC_Gram+ Corynebacterium_diphtheriae_NCTC_13129 Corynebacterium_diphtheriae_NCTC_13129 NC_002935 2239756..2241060 Cerdeno-Tarraga,A.M.,_Efstratiou,A.,_Dover,L.G.,_Holden,M.T.,_Pallen,M.,_Bentley,S.D.,_Besra,G.S.,_Churcher,C.,_James,K.D.,_De_Zoysa,A.,_Chillingworth,T.,_Cronin,A.,_Dowd,L.,_Feltwell,T.,_Hamlin,N.,_Holroyd,S.,_Jagels,K.,_Moule,S.,_Quail,M.A.,_Rabbinowitsch,E.,_Rutherford,K.M.,_Thomson,N.R.,_Unwin,L.,_Whitehead,S.,_Barrell,B.G._and_Parkhill,J. NA 0:1305 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_BX248353.On_Nov_10,_2003_this_sequence_version_replaced_gi:20070482.COMPLETENESS:_full_length. NA 21-JAN-2012 Corynebacterium_diphtheriae_NCTC_13129_chromosome,_complete_genome. NA Coryneform_bacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Corynebacterium_diphtheriae_Q6NEU9_CORDI.gb Corynebacterium_Lehmann_and_Neumann_1896_(Approved_Lists_1980)_emend._Bernard_et_al._2010 38232642 Nucleic_Acids_Res._31_(22),_6516-6523_(2003) NA NC_002935 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 14602910 1305 NA genomic_DNA NA NCTC13129 NA Pacinia_loeffleri NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 257309 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Corynebacteriaceae,_Corynebacterium The_complete_genome_sequence_and_analysis_of_Corynebacterium_diphtheriae_NCTC13129 NA NC_002935.2 ATGTTCATAAATATAAGTATGAAAAACTGCAACGAATCTTTGACCCCGCAGGGCCGTCGTGCGCTGTTGGCGGCCTTGTTGGGAACCATCATTGAGTGGTACGACTACGCTCTCTATGGTGCCGCAGCTGCTGTCGTGATTGCCCCGCTCTTTTTCGAGTCATCTGCGGCCGGCGGCCAGCTTGCCGCTTTTGCCACGTTTGCAGTTGGTTTTGTCGCACGCCCGTTAGGCGGTGTGGCCATTGGCCACATTGGTGATCGTTTTGGCCGTCGACCTGCGATGATCTTGAGTGTTTTGATGATGGGCATTGCCACGGTCGGCATTGGTTTGCTCCCCACAGAGGCCGCTATTGGTGTGCTGGCTCCTGTGCTCTTGGTGTTCTTCCGTCTGATTCAAGGTTTGGGTGCCGGTGCTGAACTTGCTGGTGCGATGACTGTGGTGGCCGAATTTGCCCCTGCGGCTAAGCGTGGACTTTTCACCTCCTTGGTTTTGGCGATGCCTCCCGCGGGCATTGTGTTGGCGACTGCGGCGTTCATGGGGGCGTCGTCAGTAGGCGATGAGGCATTGTTGGGTGGCGTGTGGCGTATCCCGTTCCTTATTTCTGCGCTGTTGTTCTTCATTGCGTTGTTCATGCGCAAGCGTTTGGAGGAAACCCCAGAGTATGTAGCGGCCATGGAGGAGCGCTCTGAACAGGCAAAACACCAGTCTTTGCCGGTTGTGGAGCTGCTCAAGTCGCATAAGCGTCAGGTGGCTTTGGGATTTTTGTCCATCACCGGTCACAACGCACTGAACTATGCGATGGCTGTTTTTGCCATCTCCTTTATGACTTCCGATGCGGTGGGCATGGCCAAGTTTGATGCTTTGCTGGCGGTTTCTGCCGGAACCTTGGTGGGTGTGGTTGCTACCCCGCTGGGCGGGCTGGCCTCCGACCGATTCGGTGCTGATCGTGTATTGGCTACCGGCTCATTAATCGGTGCTTTTTATGCAGTGCCCTTCCTTTTAGGTTTGCAAACGGGCGATGCGGTGATCGCCGCGCTGACGGTCGCTTTTGGCTATGGTGCGGTGATTTCGTTGACCTCGGGCAGCCAAGGCGCATTCCTTGCTGGGCTGTTTCAAGCACGCGCGCGTTTTAGTGGCATTGCGCTGGCTCGGGAAACCAACGGTGCTCTTATCGCTGGGTTCACCCCGCTGGTGTTGACGTGGATCCTGCATGCCTCTGGCGGGAATGTACTTGCTGCCGGTGCTGTGGTGTCGGCATCCCTGCTGGTGTCTTTTGTTTCGATCATGGTGGCCATGCGCCGCTAA > 380 NCgl2325 NA benzoate_transporter NP_601609.1 11 MASQISGGWQSAKHRTTVYMVLVVVGISILFDGYDLVIYGAVLSTLLEDPTQIGALSPAVAGTLGSYAMIGVMIGALSAGAVGDRLGRRKVMLTAIVWFSVGMALTAFASSIALFGFLRFLTGLGVGMIVATGGAIIAEFAPANRRNLFNAIVYSGVPAGGVLASILALLFEDVIGWRGLFLIGGSPLLFLLPLAYFFLPESPRWLTSRGRAADAKALCARYGLPTEEFVVEKQQETKGTGFAGIFSSKYLMGTILIGAMSFIGLLSTYGLNTWLPKIMESNGATSHDSLYSLLFLNGGAVFGGLIASWFADRIGAKTVITSTFALAAICLGVLPNISSWPMMYTAIAFAGVGVLGTQVLTYGLTSNFFGTECRAAGVAWCAGFGRLGGIVGPAIGGLIIGAGFGPSSAFLIFAAAAAIGAVCTLLIPRSPAEVEVKVAQEPLARV high_GC_Gram+ Corynebacterium_glutamicum_ATCC_13032 Corynebacterium_glutamicum_ATCC_13032 NC_003450 2552606..2553946 Nakagawa,S. NA 0:1341 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_BA000036.On_Jan_21,_2005_this_sequence_version_replaced_gi:23308765.Genome_re-annotation_resulted_from_the_combination_of_theCorynebacterium_glutamicum_complete_genomes_deposited_in_GenBankAccession_Numbers_BA000036_and_NC_003450._First_version_ofNC_003450_was_annotated_by_NCBI_staff_using_the_GenMark_HMMprediction_program_and_BLAST_analysis_results._Cgl####_systematicgene_names_were_used_but_the_same_gene_names_were_later_re-used_inBA000036_record._To_avoid_the_confusion_in_the_the_present_recordNCgl####_refers_to_the_new_systematic_gene_name_for_the_revisedversion_of_the_Corynebacterium_glutamicum_genome,_whereas,_Cgl####refers_to_the_corresponding_gene_in_the_Corynebacterium_glutamicumcomplete_genome_deposited_at_GenBank_Accession_Number_BA000036.COMPLETENESS:_full_length. NA 20-JAN-2012 Corynebacterium_glutamicum_ATCC_13032,_complete_genome. NA Coryneform_bacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Corynebacterium_glutamicum_Q8NN04_CORGL.gb Corynebacterium_Lehmann_and_Neumann_1896_(Approved_Lists_1980)_emend._Bernard_et_al._2010 58036263 (in)_PROCEEDINGS_OF_THE_9TH_INTERNATIONAL_SYMPOSIUM_ON_THE_GENETICS_OF_INDUSTRIAL_MICROORGANISMS:_21;_(?) NA NC_003450 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1341 NA genomic_DNA NA ATCC_13032 NA Micrococcus_maripuniceus NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 196627 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Corynebacteriaceae,_Corynebacterium The_complete_genome_sequencing_of_Corynebacterium_glutamicum_ATCC_13032 NA NC_003450.3 GTGGCTTCCCAAATTTCTGGCGGCTGGCAAAGTGCCAAACACCGCACCACTGTTTACATGGTCCTCGTAGTTGTGGGCATTTCTATTCTTTTTGACGGCTACGATCTAGTGATCTACGGCGCCGTGCTGTCAACACTACTTGAAGATCCAACCCAGATCGGTGCGCTCAGCCCAGCAGTCGCCGGCACCCTTGGTTCCTACGCCATGATCGGCGTGATGATCGGTGCTCTATCTGCAGGTGCCGTTGGTGACCGCCTTGGTCGTCGCAAAGTTATGCTCACCGCAATCGTCTGGTTCTCTGTGGGCATGGCGCTGACCGCGTTCGCGTCCTCGATTGCGCTGTTCGGTTTCTTGCGCTTCCTCACCGGACTTGGCGTGGGCATGATCGTTGCAACCGGCGGCGCAATCATCGCGGAGTTCGCTCCAGCGAATAGGCGCAACTTGTTCAACGCAATCGTGTACTCCGGTGTCCCAGCCGGTGGCGTGCTGGCTTCTATCCTTGCACTGCTCTTTGAAGATGTCATCGGCTGGCGCGGACTCTTCCTCATCGGTGGATCCCCACTACTGTTCCTCCTGCCACTTGCATACTTCTTCCTCCCAGAGTCCCCGCGCTGGCTCACCTCCCGCGGCCGTGCTGCGGACGCCAAAGCCCTCTGCGCACGCTATGGGCTGCCGACGGAGGAATTTGTCGTCGAAAAGCAGCAGGAAACAAAGGGCACCGGATTCGCTGGAATTTTCTCCTCCAAGTACCTCATGGGCACCATTCTCATCGGCGCAATGAGCTTCATCGGGCTGCTTTCGACCTACGGCCTGAACACCTGGTTGCCAAAGATCATGGAATCCAACGGCGCAACCTCACATGATTCCCTGTACTCCCTGCTGTTCCTCAACGGCGGCGCAGTGTTCGGTGGCCTCATCGCATCCTGGTTCGCTGACCGCATCGGCGCGAAGACCGTGATCACCTCCACCTTCGCTCTCGCCGCGATCTGCCTCGGAGTCCTGCCAAACATCTCCTCCTGGCCAATGATGTACACCGCAATCGCATTCGCAGGCGTCGGCGTCCTGGGCACCCAGGTTCTCACCTACGGCCTGACCTCGAACTTCTTCGGAACCGAATGCCGCGCAGCGGGAGTTGCATGGTGTGCAGGATTCGGCCGACTCGGCGGAATCGTCGGACCAGCAATCGGTGGCCTGATCATCGGCGCAGGATTCGGACCAAGCTCCGCATTCCTCATCTTCGCAGCAGCTGCCGCAATCGGCGCGGTCTGCACCTTGCTGATCCCGCGCTCCCCAGCAGAAGTAGAGGTCAAGGTCGCGCAGGAACCACTTGCACGTGTCTAA > 381 ckrop_0883 NA putative_transport_protein YP_002906180.1 11 MTSATRAPGSTTVSPGTVSPMTDPSMRRKIIVASMVGTTIEFYDFYVYATAAVAVFPYLFFPDNDDPTVKLFASFATFGLAFLGRPLGSVIFGHFGDRIGRKATLVASLLTMGIATFIIGLLPTYETIGLFAPALLALMRFSQGLGLGGEWSGAALLATETASKDKRAWAAMWPQLGAPIGFLVANGSFLILATTLGYTIGDTSGAFMSWGWRIPFLFSSVMVIIGLWVRFSLEETPVFKKAVESGKRVDAPLAEVFKTSWVQIIQGTLVMVSCYTLFYLITTWILSYGIGKPEDSAGLGIPYEEFLVLQLISVLMFMGTIPFAALGADKRGRRKSLLTSSVAMLIFAALLPVLLNSESANKMTVLIFLIVGMGVMGCIFSPMSAVLPELFPTNVRYTGSGIAYNLASILGAAIAPFIATWLVTRFSVDMVGLYLAATTVISMIAIWVIPETKHKDMIET high_GC_Gram+ Corynebacterium_kroppenstedtii_DSM_44385 Corynebacterium_kroppenstedtii_DSM_44385 NC_012704 1048982..1050364 Tauch,A.,_Schneider,J.,_Szczepanowski,R.,_Tilker,A.,_Viehoever,P.,_Gartemann,K.H.,_Arnold,W.,_Blom,J.,_Brinkrolf,K.,_Brune,I.,_Gotker,S.,_Weisshaar,B.,_Goesmann,A.,_Droge,M._and_Puhler,A. NA 0:1383 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001620.COMPLETENESS:_full_length. NA 03-OCT-2011 Corynebacterium_kroppenstedtii_DSM_44385_chromosome,_complete_genome. NA Coryneform_bacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Corynebacterium_kroppenstedtii_C4LII2_CORK4.gb Corynebacterium_Lehmann_and_Neumann_1896_(Approved_Lists_1980)_emend._Bernard_et_al._2010 237784637 J._Biotechnol._136_(1-2),_22-30_(2008) NA NC_012704 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 18430482 1383 NA genomic_DNA NA DSM_44385 NA Corynebacterium_sp._CCUG_35717 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 645127 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Corynebacteriaceae,_Corynebacterium Ultrafast_pyrosequencing_of_Corynebacterium_kroppenstedtii_DSM44385_revealed_insights_into_the_physiology_of_a_lipophilic_corynebacterium_that_lacks_mycolic_acids NA NC_012704.1 CTACGTTTCGATCATATCTTTGTGCTTAGTTTCTGGGATTACCCAAATAGCAATCATGGATATCACAGTGGTGGCGGCGAGGTATAGGCCGACCATGTCGACACTGAACCGTGTGACCAGCCATGTTGCGATGAAGGGCGCGATGGCAGCTCCCAGAATTGACGCAAGGTTGTACGCAATTCCCGAGCCGGTATAGCGGACGTTAGTGGGGAAAAGCTCGGGCAGAACTGCGGACATCGGGCTGAAAATACAACCCATCACACCCATTCCCACGATGAGGAAGATCAATACGGTCATTTTGTTCGCTGACTCGGAATTCAGCAACACGGGGAGCAAGGCCGCGAAAATGAGCATGGCGACCGATGACGTGAGTAGTGATTTCCGACGACCCCGTTTATCGGCGCCCAGGGCCGCAAATGGGATGGTTCCCATAAACATCAATACAGAGATCAGCTGTAGAACAAGGAATTCTTCGTAGGGAATTCCCAACCCGGCCGAGTCCTCAGGTTTCCCAATGCCGTATGACAAAATCCACGTCGTAATGAGATAAAAGAGCGTGTAGCACGACACCATGACTAAAGTGCCTTGGATAATTTGGACCCATGACGTTTTGAAGACTTCTGCCAGTGGTGCGTCGACCCGCTTTCCAGATTCAACGGCTTTCTTGAAGACCGGGGTTTCTTCTAACGAGAAGCGAACCCATAGGCCGATGATGACCATGACTGAAGAGAAGAGGAACGGAATACGCCATCCCCACGACATGAATGCGCCAGACGTGTCACCGATGGTGTAACCCAATGTGGTTGCGAGGATGAGGAAGGATCCGTTGGCCACCAGGAAACCAATCGGCGCTCCCAATTGCGGCCACATCGCAGCCCACGCTCTTTTATCTTTTGACGCGGTTTCTGTGGCCAGAAGTGCTGCCCCCGACCATTCTCCACCAAGGCCGAGCCCCTGGCTGAACCTCATGAGTGCTAATAGTGCAGGTGCGAATAAGCCAATGGTCTCGTACGTCGGTAATAAACCGATGATAAATGTCGCTATACCCATGGTGAGCAGCGAGGCAACCAGTGTCGCTTTGCGGCCGATTCGGTCGCCGAAGTGTCCAAAGATCACCGATCCGAGTGGCCGACCTAAGAAAGCGAGCCCGAACGTCGCAAAGGATGCGAAAAGTTTAACGGTCGGGTCGTCATTATCTGGAAAGAATAAATAGGGAAAAACAGCTACCGCAGCTGTGGCGTAGACATAGAAATCATAAAATTCGATTGTTGTTCCCACCATAGATGCGACGATAATTTTCCGACGCATCGACGGGTCTGTCATTGGGGAGACTGTACCAGGGGAGACAGTAGTGGAACCCGGCGCTCGGGTAGCAGAAGTCAC > 382 HMPREF0299_6374 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family_protein EFM48779.1 11 MSQLQQTVTKPTAAPRVDAATRRRIIIASMVGTTIEFYDFYVYATAAVAVFPYLFFPKNDDPTIGLLASFATFGLAFVARPLGSIVFGHFGDRIGRKATLVGSLLTMGIATFLIGLLPTYGQVGIIAPALLALMRFCQGLGLGGEWSGAALLATETADKGKRAWAAMWPQLGAPFGFLVANGFFLILVTVLNHTDGDFEGAFMTWGWRIPFLLSAIMVIVGLYVRFRLEETPVFKKAVESGKKVKTPLAEVFRTSWKPLILGTFIMVSCYTLFYLVTTWVLSYGIAKKGVGLGIPYLDFLKLQLVSIFAFIVSIPVAGRLADSRGRKRTLIAVSAVMIAFGLTFSWLLRPDTATEGTVLVFLTVGMFIMGLIFGPMSAVLPELFPTNVRYTGSGISYNVASILGAAIAPFVATALVKSYGVGAVGIYLIVVSVLSLIAILLMKETKHFDMSDI high_GC_Gram+ Corynebacterium_matruchotii_ATCC_14266 Corynebacterium_matruchotii_ATCC_14266 ACSH02000005 44507..45868 Harkins,D.M.,_Yinong,S.,_Madupu,R.,_Durkin,A.S.,_Torralba,M.,_Methe,B.,_Sutton,G.G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1362 Corynebacterium_matruchotii,_formerly_called_Bacterionemamatruchotii,_is_a_gram-positive,_rod-shaped_bacterium_with_amorphologically_distinct_feature_known_as_a_whip_handle._It_hasbeen_associated_with_dental_pathogenesis.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC._SourceDNA_provided_by_Floyd_Dewhirst,_The_Forsyth_Institute,_140_TheFenway,_Boston,_MA,_02115,_USA_(fdewhirst@forsyth.org)._Funded_byNational_Institute_of_Allergy_and_Infectious_Diseases_on_behalf_ofthe_NIH_Roadmap_Human_Microbiome_Project_(U54-AI-084844-01).##Genome-Assembly-Data-START##Finishing_Goal_::_Noncontiguous_FinishedCurrent_Finishing_Status_::_Noncontiguous_FinishedAssembly_Method_::_Celera_Assembler_v._5.3Genome_Coverage_::_19.3xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 01-SEP-2010 Corynebacterium_matruchotii_ATCC_14266_gcontig_1125149795837,_whole_genome_shotgun_sequence. NA Coryneform_bacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Corynebacterium_matruchotii_E0DET8_9CORY.gb Corynebacterium_Lehmann_and_Neumann_1896_(Approved_Lists_1980)_emend._Bernard_et_al._2010 305658897 Submitted_(01-JUL-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ACSH02000005 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1362 NA genomic_DNA NA ATCC_14266 NA Oospora_matruchoti NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 553207 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Corynebacteriaceae,_Corynebacterium Direct_Submission NA ACSH02000005.1 ATGTCTCAACTGCAACAAACAGTCACCAAACCTACAGCCGCGCCCCGAGTTGACGCGGCCACTCGCCGGCGGATTATTATCGCGTCTATGGTGGGCACCACCATTGAGTTTTATGACTTCTACGTCTACGCCACTGCCGCCGTTGCTGTCTTCCCGTATTTGTTCTTCCCGAAAAACGACGACCCCACCATTGGGCTTTTAGCGTCTTTCGCTACGTTTGGCTTGGCATTCGTCGCCCGCCCTTTGGGTTCTATTGTTTTCGGTCACTTCGGTGATCGTATCGGCCGGAAAGCCACCCTGGTTGGTTCGTTGCTGACCATGGGTATTGCCACATTCCTCATTGGTCTGCTCCCCACCTATGGCCAGGTTGGTATTATCGCCCCTGCCCTATTGGCTCTCATGCGGTTCTGTCAGGGCCTTGGGCTGGGTGGCGAATGGTCCGGTGCCGCGTTGCTGGCGACGGAAACCGCCGACAAGGGGAAACGTGCCTGGGCCGCCATGTGGCCGCAGCTGGGTGCCCCGTTTGGTTTCCTGGTTGCTAACGGTTTCTTCCTGATCCTTGTCACCGTCTTAAACCACACTGATGGTGATTTTGAGGGGGCCTTTATGACCTGGGGTTGGCGGATTCCCTTCCTGCTCAGCGCCATCATGGTCATTGTTGGGTTGTATGTGCGGTTCCGGCTGGAGGAAACCCCGGTGTTTAAGAAGGCTGTGGAGTCCGGGAAGAAGGTGAAGACTCCCCTGGCCGAGGTGTTCCGTACCTCATGGAAGCCGTTAATTCTGGGCACGTTCATCATGGTGTCCTGCTATACCCTGTTTTACCTGGTCACCACCTGGGTGCTTTCCTATGGTATTGCCAAGAAGGGTGTTGGGTTGGGTATCCCCTACCTGGACTTTTTGAAGCTGCAGCTCGTCTCGATTTTCGCGTTCATCGTGAGCATTCCGGTTGCGGGGCGGCTTGCTGATTCCCGGGGCCGGAAGCGCACTCTTATAGCGGTTTCCGCCGTCATGATTGCGTTTGGTCTTACCTTCTCCTGGTTGCTGCGCCCGGATACCGCCACTGAGGGCACGGTTTTAGTGTTCCTCACGGTTGGTATGTTCATCATGGGCCTTATTTTCGGCCCCATGTCCGCGGTGCTGCCCGAGCTGTTCCCCACCAATGTGCGCTACACCGGTTCCGGGATTAGCTATAATGTGGCGTCCATCCTGGGTGCCGCTATCGCCCCGTTTGTTGCGACGGCGTTGGTGAAGTCCTATGGTGTGGGTGCCGTTGGTATTTATCTTATTGTTGTGTCCGTGCTTTCCCTCATCGCTATCTTGCTGATGAAGGAAACCAAGCATTTTGATATGTCTGACATTTAA > 383 HMPREF0305_10959 COG:_COG0477;_Pfam:_PF07690;_InterPro:_IPR011701 major_facilitator_superfamily_permease EFQ80818.1 11 MSIHPPRAQDHAAAASTAAQRWSFCAVISLGLLMVGLDNSILYTALPQLSQQLHTTDTQQLWIINAYALVLSGLLLGAGTLGDRTGHRRMFLIGLAVFGGASLLAAYSPSAWTLVLGRAFLGCGAAIMMPSSLALIRLTFPDEVERNTAIGIWGSVAVIGAAAGPTVGGFFLEHFWWGSVFLLNVPVVVVAIVLTWLLAPPNAPNPLKHWDFPSSLYSLITLASLVLAIKSLAHNWPVSAAAGIVFICGALAFGRRQARLSDPLLTFDIFGSRIFSGGALTAGGAMFGLAGLELLSTQKLQLVDALSPLHAGLIISAMALSAIPTSILGGATLHRVGFLPLISGGFLLMAAGMALVVVSRGETLPLLVSALVLTGLGAGLAMSVSSTAIINAAPLHRTGMASGVEAVSYEFGTLISIALTGTLVPLLMARELPPHLAELGTDALYHPASHAAAASAYNAGYLSTIGGLACFALLLAAITAWCFRDNPKSGDPYAATQQKDRSP high_GC_Gram+ Corynebacterium_pseudogenitalium_ATCC_33035 Corynebacterium_pseudogenitalium_ATCC_33035 ABYQ02000006 51821..53332 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1512 Corynebacterium_pseudogenitalium_ATCC_33035_Strain_source,_body_site:_Urogenital_Tract_Inquiries_should_be_directed_to_microbe@hgsc.bcm.tmc.edu_This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC._Source_DNA_provided_by_American_Type_Culture_Collection(ATCC33035).._Funded_by_Genomes_and_Genetics_at_BCM-HGSC_(U54HG003273).##Genome-Assembly-Data-START##Finishing_Goal_::_Improved_High-Quality_DraftCurrent_Finishing_Status_::_Improved_High-Quality_DraftAssembly_Method_::_Newbler_Assembler_v._2.3.10192009Genome_Coverage_::_64.65xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 05-NOV-2010 Corynebacterium_pseudogenitalium_ATCC_33035_Contig6156,_whole_genome_shotgun_sequence. NA Coryneform_bacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Corynebacterium_pseudogenitalium_E2S357_9CORY.gb Corynebacterium_Lehmann_and_Neumann_1896_(Approved_Lists_1980)_emend._Bernard_et_al._2010 311304695 Submitted_(15-OCT-2008)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ABYQ02000006 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1512 NA genomic_DNA NA ATCC_33035 NA Corynebacterium_pseudogenitalium NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 525264 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Corynebacteriaceae,_Corynebacterium Direct_Submission NA ABYQ02000006.1 TCAAGGGCTGCGGTCTTTTTGTTGAGTCGCGGCATAGGGATCTCCTGATTTCGGGTTATCGCGGAAACACCAGGCGGTTATCGCGGCTAGGAGCAAGGCGAAGCAAGCTAGGCCGCCGATGGTGGAAAGATATCCGGCATTGTAGGCGCTCGCGGCGGCCGCGTGGGAAGCGGGGTGATACAGCGCGTCGGTACCCAGTTCCGCGAGGTGGGGCGGCAGTTCGCGGGCCATGAGTAGCGGCACGAGGGTGCCGGTCAGTGCAATGGAGATCAGGGTGCCGAATTCATAGGAAACCGCTTCTACGCCCGAGGCCATGCCGGTGCGATGAAGGGGAGCGGCATTGATGATGGCGGTGGAGGACACGGACATGGCAAGGCCCGCGCCGAGGCCGGTGAGCACTAGGGCGGAGACGAGTAGGGGAAGCGTCTCGCCCCGGCTCACCACCACCAGGGCCATGCCGGCGGCCATGAGCAAGAATCCGCCGCTAATGAGTGGGAGGAACCCCACGCGATGCAAGGTGGCACCACCCAGGATGGAGGTAGGGATGGCAGACAGTGCCATGGCGGAGATAATGAGGCCGGCGTGAAGGGGTGAGAGGGCGTCGACAAGCTGCAGCTTTTGGGTACTCAGCAGCTCCAGGCCGGCGAGGCCGAACATGGCACCCCCGGCCGTTAGGGCCCCGCCGCTGAAGATACGGGAGCCAAAGATGTCGAAGGTCAGCAGGGGATCTGACAAGCGAGCCTGGCGGCGGCCGAAGGCGAGCGCGCCGCAGATGAAGACGATGCCTGCGGCGGCGCTCACCGGCCAATTATGTGCCAGGGATTTGATGGCCAGCACCAGGCTGGCGAGAGTGATAAGGGAATAAAGGGACGAAGGGAAGTCCCAGTGTTTTAGGGGGTTCGGAGCGTTTGGCGGGGCAAGGAGCCAGGTCAGCACAATAGCCACGACCACAACCGGGACATTGAGCAAAAAGACCGAGCCCCACCAGAAGTGCTCCAAAAAGAAGCCGCCCACGGTGGGGCCAGCCGCCGCGCCGATGACGGCGACAGAACCCCAGATGCCAATGGCCGTATTGCGCTCCACCTCATCGGGAAAGGTCAGGCGGATTAGCGCCAGGCTCGACGGCATCATGATGGCGGCGCCGCAGCCCAAGAAGGCGCGGCCTAAAACCAGCGTCCAAGCGCTGGGGGAATAGGCGGCGAGCAGGGAAGCGCCGCCGAAGACGGCCAAGCCGATGAGGAACATCCGCCGGTGGCCGGTGCGATCGCCCAACGTGCCGGCGCCAAGAAGGAGGCCGGAGAGCACCAACGCGTAGGCGTTGATAATCCAGAGTTGCTGGGTATCGGTGGTGTGCAATTGCTGCGAAAGCTGCGGCAATGCGGTGTAGAGGATGGAATTATCCAGCCCAACCATGAGTAACCCCAGAGAGATGACGGCGCAGAAAGACCACCGCTGTGCGGCCGTGGAGGCCGCAGCGGCGTGGTCTTGTGCGCGGGGCGGGTGGATACTCAT > 384 HMPREF0308_0291 COG:_COG0171;_Pfam:_PF02540;_InterPro:_IPR014729 NAD-synthetase EEI79463.1 11 MGVMSQTGAQLQQNIIKNLGTKPLIDPEQEVESRVEFLADYLRKTGAKGFVLGISGGQDSTLAGRLAQLAVARVEETQFWAVRLPHGVQADEDDAQIALDFIQPDHRLTVNIAPATKELDDAVATALGNSDNGEFNLGDFNRGNVKARVRMTAQYAIAGEVGALVLGSDHAAENITAFFTKWGDGAADLLPLEGLNKRQGALLLQHLGAPESTWKKIPTADLEEDRPQLADEEALGVSYTHIDDYLEGKDVPAAARQRIEELWYRGAHKRIMPPGPHTLAR high_GC_Gram+ Corynebacterium_striatum_ATCC_6940 Corynebacterium_striatum_ATCC_6940 ACGE01000007 30431..31810 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 1378:>1380 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_ATCC._The_genomic_DNA_wasprepared_from_a_single_bacterial_isolaate._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data,_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data_and_Illumina/Solexa_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_to_the_Illumina/Solexa_data_withmapping_tools_such_as_Mosaic_and_Crossmatch_and_these_data_wereused_for_error_correction_for_this_version_of_the_draft_assembly.This_draft_assembly_meets_the_HMP_draft_quality_standards_(morethan_90%_of_the_genome_is_included_in_contigs,_more_than_90%_of_acore_set_of_bacterial_genes_are_found_with_>_30%_identity_and_>_30%length;_more_than_90%_of_the_bases_in_the_assembly_have_more_than_5fold_sequence_coverage,_the_contig_N50_length_is_greater_than_5kb,the_scaffold_N50_length_is_greater_than_20kb,_and_there_is_lessthan_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_28xSequencing_Technology:_454;_ABI;_Solexa/IlluminaAnnotation_was_added_to_the_contigs_in_April_2009. NA 21-APR-2009 Corynebacterium_striatum_ATCC_6940_contig00008,_whole_genome_shotgun_sequence. NA Coryneform_bacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Corynebacterium_striatum_C2CLL1_CORST.gb Corynebacterium_Lehmann_and_Neumann_1896_(Approved_Lists_1980)_emend._Bernard_et_al._2010 223555261 Submitted_(08-JAN-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACGE01000007 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1380 NA genomic_DNA NA ATCC_6940 NA Corynebacterium_striatum_(Chester_1901)_Eberson_1918 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 525268 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Corynebacteriaceae,_Corynebacterium Direct_Submission NA ACGE01000007.1 TTAATTAGCGTATCGCTCTTGCATCTCATCGCCCACATCCTCGAGGCTGCGCCCCATCGTTTCCGGGATGAGCAGCTTGGTGTAGGCAATAGCCAAGATGCCAAGAAAACCGAAGACCATGAAAGCAACCGGGCCAGTCAACCAGTCCACCATTGGCAGGAAGAACTGCGCCACCGCCCAGTTAGTCACCCACAGGGACAGGCCCGCGATGCCCATGCCAATGCCGCGCACCTCAACGGGTACGAGTTCCGAGATGAGCAGCCAGGTCGTTGGCGAGACCGCAGCTTGTTGGAAAGCAATGAATAGCGCCATGAACGCCAGCGAAACCAAAGCCATCGTGGTAGAGCCTTCGGCGAAGCGATAGGCGATAGAGAGCACCAACAAGGAAACCACATTGCCGATGAGGCCGATCATGAGCAGGCGCTTGCGCCCGATGCGGTCCACAGCCTTGAGCCCGAACCAGCAGGCAATGACGGAAACGGTGCCGATGAGGATCGAGGTGTAGACCGCGTTCGAGGTGGAAATACCCACCTGATTCATCATGGTCGGGGCAAAGTAGACAATCGCGTTTACACCCGTGATTTGCTGCGTGAGCCCCATGAGCATTGCGAGCAGGACGGTAACCTGGAGCCAACGCTCCCCTTTCAGGCGCTGCCACTCGCTACGCTTAACCGCTCCCCCAGCGGCTCCGCTATCCGCGGATCCACCCGTGCCGAGTTCCGTGCCGCGGATGCCCACGCGCGCAGCCAGCTTCCAGGCTTCATCGACTCTGCGTTTCTTCAGCAGCCACACCGGCGTATCGGGCAGGAAGAGCATGCCCACTGCCAGCAGCAGACCAGGGACTGCGGCAAGACCTAGCATCCAGCGCCAGGAGCCGGTTCCAGCCAGTGCGGAATTGACCAGGTAAGCCAGCAGCTGGCCCACCACGATCATCAAGGTATTAAGCGAGACCAAACGCCCGCGCACACGCGCCGGTGAGATTTCCGAAATGTACATCGGCGAGACAATAGATACCGCACCGACCGCCACGCCGAGAAACGCGCGCGCCAGGGCCAGCATAAATACGGAGTCGGCCAGGGCACACCAGATGGAGCCAAGGACAAAGACGCAGCCGCCGAGAATCAGCGTCTTGCGGCGGCCCAACGCATCTGCCACGCGGCCGGCAACGAGCGCACCGAAAGCCGCGCCCACGAGCAGCATGGAGGTAACCCAGCCTTCTTCGTGGGAATTCATGTCGAACTCGGGGCCAATAAACAGAAGAGCACCGGACATGACGCCGGTGTCGTAGCCAAAGAGCAAGCCACCGAGCGCGGCAACGATGGCAACGGCTTTGACGAAAGAATGATTTTTCACTCGTTTATCCTTACAGGCCGCTACCAT > 385 COXBURSA331_A0471 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 putative_iorganic_phosphate_transporter YP_001596305.1 11 MTNQVQNPTLESLDEQKLNRLHWRMVITAGTGFFTDAYDLFVIGVVTALLMPLWHLSASQIALLNGASLASAAVGAVMFGWFADKFGRKKMYGIEVLILFIGALLSAVSPSFAWLLVSRIIVGIGIGGDYPTSAVVASEYANRKNRGFLVLLVFAMQAVGLIIGPLFASLLMAFHLPHALVWRLLLAFGALPAASVFYLRRRIAETPRFLLNKSPVEVSRVVSDLAGHSDTAVATPVQKLFSPKWLKCLIGTAGAWFLLDVALYGNGVSSVLIMKAISPHASLLKHTLLSALIFLCFAVPGYFSAATYVDKIGRKTLQIAGFVMMGLCYLLIAGIPHISDQLPLFVGIFGISFFFINFGPNATTFLIPSEIYPIHLRARAHGLSAAVGKAGAFIGAFFLPLLLKNMGLAYTMAVVAIASFLGIFATFLVPEMKGVSLEKPQ gamma_subgroup Coxiella_burnetii_RSA_331 Coxiella_burnetii_RSA_331 NC_010117 405875..407200 Seshadri,R._and_Samuel,J.E. NA 0:1326 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000890.Bacteria_and_DNA_source_can_be_obtained_from_James_E._Samuel,Department_of_Microbial_and_Molecular_Pathogenesis,_College_ofMedicine,_Texas_A&M_Health_Science_Center,_College_Station,_TX,77843-1114;_jsamuel@tamhsc.edu.COMPLETENESS:_full_length. NA 25-JAN-2012 Coxiella_burnetii_RSA_331_chromosome,_complete_genome. NA Coxiellaceae_Garrity_et_al._2005 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Coxiella_burnetii_A9NBJ1_COXBR.gb subgenus_"Coxiella"_Philip_1943 161829703 Unpublished NA NC_010117 NA NA Legionellales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives NA 1326 NA genomic_DNA NA RSA_331 NA Rickettsia_diaporica NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 360115 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Legionellales,_Coxiellaceae,_Coxiella Genome_sequencing_of_phylogenetically_and_phenotypically_diverse_Coxiella_burnetii_isolates NA NC_010117.1 CTACTGGGGTTTTTCCAGAGAGACCCCTTTCATTTCAGGCACTAAAAAAGTTGCAAAAATACCGAGAAAAGAAGCGATTGCTACGACCGCCATTGTGTAGGCCAACCCCATATTTTTTAATAACAAAGGTAAAAAGAAAGCACCGATAAACGCGCCTGCTTTACCCACGGCGGCGGATAACCCGTGTGCTCGCGCACGTAGGTGAATGGGGTATATTTCGGAAGGAATCAGAAAAGTCGTTGCATTAGGCCCGAAATTGATAAAAAAGAAACTGATTCCAAAGATTCCCACAAAGAGAGGTAACTGATCACTAATATGCGGGATTCCGGCAATGAGTAAATAACATAAACCCATCATGACAAAACCCGCTATTTGAAGCGTTTTTCGTCCAATCTTATCGACATAGGTCGCAGCGGAAAAATAGCCGGGAACCGCAAAACAAAGAAAAATAAGGGCAGAAAGAAGGGTGTGTTTTAATAACGAGGCGTGCGGACTAATCGCTTTCATGATAAGCACGGAGGAGACACCATTGCCATAAAGAGCGACGTCTAGCAAAAACCAGGCACCAGCGGTTCCGATCAAGCATTTAAGCCATTTCGGGGAGAAGAGTTTCTGGACAGGAGTGGCGACCGCTGTGTCAGAATGACCCGCCAGGTCACTGACCACACGACTTACTTCCACCGGAGATTTGTTTAATAAAAATCGCGGCGTTTCCGCTATTCTTCTTCGTAAATAAAAAACAGAGGCTGCTGGTAGCGCTCCAAAGGCGAGCAATAGTCGCCATACAAGTGCATGCGGCAGATGAAACGCCATCAATAAAGAGGCAAACAGCGGACCTATAATCAACCCTACCGCCTGCATCGCAAACACGAGCAGCACTAAAAAGCCACGGTTTTTTCGATTGGCATATTCACTCGCCACGACAGCACTAGTTGGATAATCGCCTCCGATTCCAATGCCTACGATAATTCGGGAAACCAAAAGCCAAGCAAAAGACGGCGAAACAGCCGAAAGCAAAGCGCCGATAAATAGGATAAGCACTTCAATGCCATACATTTTCTTTCGACCAAATTTATCGGCAAACCATCCAAACATTACCGCCCCTACAGCTGCCGAGGCAAGCGAAGCACCGTTTAATAGCGCAATTTGAGAGGCGCTAAGGTGCCATAACGGCATCAATAATGCCGTGACAACGCCGATAACGAATAAATCATAAGCATCCGTAAAAAATCCCGTCCCAGCGGTAATCACCATACGCCAATGCAGGCGGTTAAGTTTCTGTTCGTCTAAAGATTCTAGTGTAGGGTTTTGAACCTGGTTGGTCAT > 386 CTU_06600 NA Galactose-proton_symporter YP_003209023.1 11 MMTTSTHSHTLNRQAFTVCFLAALAGLLFGLDMGVIAGALPFLARTFDLNSHQQEIVVSVMMFGAALGALCSGPMSSSLGRRRSLLLGATLFVVGSLGCAAAGNMPMLAIARFILGLAVGVASFTAPLYLSEIAPERIRGSMISLYQLMITIGILAAFISDTALSGGGHWRWMLGIITFPAVVLFIGVLTLPESPRWLMMKRRDALAASVLKRLRNSDKDAQHELNQIRESVKIKQRGWQLFRHNAHFRRSTGLGILLQFMQQFTGMTVIMYYAPKIFEIAGFATTRQQMWGTVIAGLTNVLATFIAIGLVDRWGRKPVLKLGFAVMAVCMGILGFMFYSGLHSAVGQYLAVLILLLFITGFAMSAGPLIWVLCSEIQPLAGRDFGVTCSTMANWIANMIIGASFLTLIDTIGSPNTFWLYGLLNVVCIVLTLLFVPETKNISLEDIERNLMNGAPLRLIGQPVASDAPRAATAR gamma_subgroup Cronobacter_turicensis_z3032 Cronobacter_turicensis_z3032 NC_013282 712496..713923 Stephan,R.,_Lehner,A.,_Tischler,P._and_Rattei,T. NA 0:1428 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FN543093.On_Mar_4,_2011_this_sequence_version_replaced_gi:260595792.COMPLETENESS:_full_length. NA 26-JAN-2012 Cronobacter_turicensis_z3032,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cronobacter_turicensis_C9XVI4_CROTZ.gb Cronobacter_Iversen_et_al._2008 325295716 J._Bacteriol._193_(1),_309-310_(2011) NA NC_013282 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21037008 1428 NA genomic_DNA NA NA NA Cronobacter_turicensis_Iversen_et_al._2008 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 693216 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Cronobacter Complete_genome_sequence_of_Cronobacter_turicensis_LMG_23827,_a_food-borne_pathogen_causing_deaths_in_neonates NA NC_013282.2 TTAGCGCGCGGTCGCAGCGCGGGGAGCATCAGACGCAACAGGCTGACCAATAAGGCGCAGCGGCGCGCCGTTCATCAGGTTGCGTTCGATGTCTTCCAGAGAGATATTTTTGGTTTCCGGCACAAACAGCAGCGTCAGAACAATGCACACGACATTGAGCAGGCCATACAGCCAGAAGGTGTTCGGACTACCGATAGTGTCGATAAGCGTCAGGAAAGAAGCGCCAATGATCATATTGGCTATCCAGTTCGCCATCGTGGAACAGGTGACCCCGAAATCGCGCCCGGCCAGCGGCTGGATCTCCGAGCACAACACCCAGATAAGCGGACCGGCGCTCATGGCGAAACCCGTGATGAAAAGCAGCAGGATCAGCACCGCCAGATATTGCCCGACGGCGCTGTGCAGCCCGCTGTAAAACATGAAGCCGAGAATGCCCATGCAAACCGCCATCACTGCGAACCCCAGTTTCAGGACAGGCTTGCGGCCCCAACGATCCACAAGGCCAATCGCAATAAAGGTGGCGAGCACATTCGTCAGCCCGGCGATCACGGTGCCCCACATCTGCTGTCGGGTTGTGGCGAATCCGGCGATTTCAAAGATTTTCGGCGCGTAGTACATGATGACCGTCATGCCGGTGAACTGCTGCATAAACTGCAACAGAATGCCAAGGCCGGTGGAGCGGCGAAAATGGGCGTTGTGACGGAATAATTGCCAGCCGCGCTGTTTTATTTTTACGCTTTCACGGATCTGGTTTAGCTCGTGCTGCGCGTCTTTATCGCTGTTACGCAGTCGTTTAAGTACGCTCGCCGCCAGCGCATCACGGCGTTTCATCATCAGCCAGCGCGGGCTTTCCGGCAGCGTCAGCACGCCGATAAACAGCACCACTGCCGGAAAGGTGATAATGCCCAACATCCAGCGCCAGTGGCCGCCGCCGCTCAGGGCCGTATCAGAAATGAACGCGGCCAGAATGCCGATAGTGATCATCAGCTGATACAGCGAAATCATACTGCCGCGAATACGTTCCGGGGCGATTTCAGAGAGATACAGCGGCGCCGTGAACGAGGCCACGCCGACCGCCAGACCCAGAATAAAGCGCGCTATCGCCAGCATTGGCATATTCCCTGCCGCCGCGCAGCCGAGCGAGCCGACGACAAACAGCGTGGCGCCGAGCAACAGGCTTCTGCGGCGGCCCAGCGAGGAGGACATCGGGCCGCTGCACAGCGCGCCCAGCGCCGCGCCGAACATCATGACGCTGACCACAATTTCCTGCTGGTGGCTGTTAAGGTCGAATGTTCGCGCGAGAAACGGTAGCGCGCCTGCGATGACGCCCATATCGAGGCCAAACAGCAACCCGGCGAGCGCCGCGAGAAAGCAGACGGTAAACGCCTGCCGGTTCAAAGTGTGAGAGTGTGTTGAAGTCGTCATAAT > 387 CGB_K4550W Similar_to_TIGR_gene_model,_INSD_accession_AAW44159.1 maltose_porter XP_003196839.1 NA MSLSNSNFAQQIKAETCNEKEVYNETIHVERADDEVKADMTQFKADAVEAESAEYSMTVLEAVKAYPMACFWAFVMSFTIIMESYDVFLIGNFVALPAFRDRFGIPDETGGYVIATKWQSALQMSGQLGALIGVFLAGPLTSRIGYRWATLVGLMLMNATIFVSFFANSLPLFFTGQLLEGIPWGIFIANAPAYCSEIVPMRLRAPATQVLQMFWAIGSIIVGAVTYKYNTRTDPSAYKIPLALQWMFPTPLAILMFLAPESPWWLVRKGRLDQAARSVERLGRKSRLNASETVAMIKRVVDLEMSTSAPSYVELFRKTDLRRTLIVCGIYAAQNLSGNLIANQAVYFFEQAGMTVDTAFALGLITSALQMIFVMGSWFLTTYFGRRTLYLWGTGVNTALLIALGVAASVGTSISASYAQASLGLVISVLFTFAAAPVSWVVIGETSAIRLRPLTTGIGRATYYIIEIPCIFLASYMLNPTGGNLGGKCGYVWGGTGLFCFVVAYFCLPEMKGRSYREIDILFKRRIPARKFATTEIGVEDDE Tremellomycetidae Cryptococcus_gattii_WM276 Cryptococcus_gattii_WM276 XM_003196791 NA DSouza,C.A.,_Kronstad,J.W.,_Taylor,G.,_Warren,R.,_Yuen,M.,_Hu,G.,_Jung,W.H.,_Sham,A.,_Kidd,S.E.,_Tangen,K.,_Lee,N.,_Zeilmaker,T.,_Sawkins,J.,_McVicker,G.,_Shah,S.,_Gnerre,S.,_Griggs,A.,_Zeng,Q.,_Bartlett,K.,_Li,W.,_Wang,X.,_Heitman,J.,_Stajich,J.E.,_Fraser,J.A.,_Meyer,W.,_Carter,D.,_Schein,J.,_Krzywinski,M.,_Kwon-Chung,K.J.,_Varma,A.,_Wang,J.,_Brunham,R.,_Fyfe,M.,_Ouellette,B.F.,_Siddiqui,A.,_Marra,M.,_Jones,S.,_Holt,R.,_Birren,B.W.,_Galagan,J.E._and_Cuomo,C.A. NA 0:1632 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_014948).COMPLETENESS:_incomplete_on_both_ends. NA 07-JUL-2011 Cryptococcus_gattii_WM276_maltose_porter,_partial_mRNA. NA Tremellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cryptococcus_gattii_E6RE27_CRYGA.gb Filobasidiella 321264242 MBio_2_(1),_E00342-E00310_(2011) fungi XM_003196791 NA NA jelly_fungi basidiomycetes 21304167 1632 K mRNA NA WM276 NA anamorph_of_Filobasidiella_bacillispora NA forward NA NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 367775 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Tremellomycetes,_Tremellales,_Tremellaceae,_Filobasidiella,_Filobasidiella/Cryptococcus_neoformans_species_complex Genome_variation_in_Cryptococcus_gattii,_an_emerging_pathogen_of_immunocompetent_hosts NA XM_003196791.1 ATGAGTCTGTCGAATTCTAACTTCGCCCAACAAATCAAGGCCGAGACCTGCAATGAGAAGGAGGTCTACAATGAGACGATTCATGTCGAACGAGCGGACGACGAAGTGAAGGCGGACATGACCCAGTTTAAGGCGGATGCGGTGGAGGCGGAGAGTGCTGAATACTCTATGACGGTTTTGGAGGCCGTCAAGGCGTACCCTATGGCTTGCTTCTGGGCATTTGTCATGTCTTTCACCATTATTATGGAATCCTATGATGTATTTCTCATTGGAAACTTCGTGGCTCTGCCCGCCTTCAGAGACCGATTCGGTATACCTGACGAGACTGGCGGTTACGTGATTGCGACCAAATGGCAGTCGGCACTTCAGATGTCTGGGCAGCTTGGTGCGCTCATTGGCGTTTTCCTTGCAGGTCCCCTCACTAGCCGTATTGGATATCGTTGGGCGACTTTGGTTGGCCTCATGCTCATGAACGCGACCATATTTGTCTCATTCTTTGCCAACTCTCTTCCACTCTTCTTCACCGGCCAGCTCCTTGAGGGCATACCCTGGGGCATTTTCATTGCCAACGCGCCGGCATATTGCAGCGAGATTGTCCCAATGCGCTTGCGTGCCCCTGCCACGCAGGTCCTGCAAATGTTCTGGGCAATCGGCAGTATCATCGTCGGCGCCGTCACCTACAAATATAACACCAGAACAGACCCCTCTGCCTACAAAATACCACTCGCGCTTCAATGGATGTTCCCCACTCCACTTGCTATTCTCATGTTTCTTGCACCCGAATCACCATGGTGGCTTGTCCGAAAGGGACGTCTCGACCAAGCGGCACGCTCTGTAGAGCGCCTAGGGCGCAAATCGAGGCTTAATGCGAGCGAGACTGTGGCTATGATAAAACGTGTTGTCGACCTGGAGATGTCCACCTCTGCGCCCAGCTACGTAGAATTGTTCAGAAAGACAGACCTCCGACGTACCCTCATTGTGTGCGGCATCTACGCGGCACAGAATCTTTCTGGAAACCTCATCGCTAACCAGGCCGTTTATTTCTTTGAGCAGGCCGGTATGACGGTCGACACCGCATTTGCCTTGGGCCTTATCACTTCGGCCTTGCAGATGATCTTCGTCATGGGTTCATGGTTCCTTACAACGTATTTCGGCCGACGTACCCTCTATCTTTGGGGCACAGGCGTCAACACCGCCCTGCTTATTGCCTTGGGAGTCGCCGCCTCGGTCGGCACTTCAATTTCGGCTTCATACGCCCAGGCGAGCTTAGGCCTCGTGATCTCTGTCTTGTTCACCTTCGCTGCAGCGCCTGTCTCATGGGTCGTTATTGGGGAAACGTCAGCTATCCGGCTTCGACCCCTCACTACAGGAATCGGGCGAGCTACATATTACATCATTGAGATTCCTTGCATTTTCCTCGCTTCGTACATGCTTAACCCCACTGGCGGAAACCTTGGCGGCAAGTGTGGCTATGTGTGGGGTGGGACCGGCTTATTCTGCTTCGTCGTTGCGTACTTCTGCCTGCCTGAGATGAAGGGTCGATCCTACCGCGAGATCGACATTTTGTTCAAGCGTCGCATCCCGGCTCGTAAGTTTGCGACAACTGAAATTGGGGTAGAAGACGATGAGTAG > 388 CGB_K4600W Similar_to_TIGR_gene_model,_INSD_accession_AAW46161.1;_Duplicated_and_diverged_from_upstream_gene_CGB_K4510W hexose_transport-related_protein XP_003196841.1 NA MTASKDNVVETGSVLRGRRVFEDLPNNTHRNWWQDKGLRWLTFFQLTGYAGTINSGYDGSLMNGLLTIPLFNAAIGHASGTRLGLITAGYPLGSLFAFQLAAWISDRFGRKKAIMCGAIITIIASLCQGLTRGPWAFFGSRIILGIGTAFEIVAAPTIVAEITHPRTRAQSSALTQTCYYLGSIVAAWVTFGTLTLNSDWSWRIPIVIIRTKHFHKLSLLWWCPESPRWLLRVGRRAEALDTLAKYHANGATEDPLVQFELNEIEAAIALEASMMSQSSYKAFIQTKGNRHRLWILVSLGFVSQWVGMGVISYYFAAILRSIGIIDPTQQAGLNGGLQVWNWCLAISGALAVERLGRRPLWLISTGGLLCTFIVVTACSAVYANTESKRAGYIVVAFLFLFSGFFGIAYTPMGYSYPIEILPFGLRAKGHALSQTCVFMALFFNQFVNPIALDSIGWKYYIVFIVICAIQFVNIYFRFPEGRTLEEIAEVFDGVSIVPPETEIAIDEIWVHEDKLAAEKT Tremellomycetidae Cryptococcus_gattii_WM276 Cryptococcus_gattii_WM276 XM_003196793 NA DSouza,C.A.,_Kronstad,J.W.,_Taylor,G.,_Warren,R.,_Yuen,M.,_Hu,G.,_Jung,W.H.,_Sham,A.,_Kidd,S.E.,_Tangen,K.,_Lee,N.,_Zeilmaker,T.,_Sawkins,J.,_McVicker,G.,_Shah,S.,_Gnerre,S.,_Griggs,A.,_Zeng,Q.,_Bartlett,K.,_Li,W.,_Wang,X.,_Heitman,J.,_Stajich,J.E.,_Fraser,J.A.,_Meyer,W.,_Carter,D.,_Schein,J.,_Krzywinski,M.,_Kwon-Chung,K.J.,_Varma,A.,_Wang,J.,_Brunham,R.,_Fyfe,M.,_Ouellette,B.F.,_Siddiqui,A.,_Marra,M.,_Jones,S.,_Holt,R.,_Birren,B.W.,_Galagan,J.E._and_Cuomo,C.A. NA 0:1563 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_014948).COMPLETENESS:_incomplete_on_both_ends. NA 07-JUL-2011 Cryptococcus_gattii_WM276_hexose_transport-related_protein,_partial_mRNA. NA Tremellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cryptococcus_gattii_E6RE32_CRYGA.gb Filobasidiella 321264246 MBio_2_(1),_E00342-E00310_(2011) fungi XM_003196793 NA NA jelly_fungi basidiomycetes 21304167 1563 K mRNA NA WM276 NA anamorph_of_Filobasidiella_bacillispora NA forward NA NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 367775 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Tremellomycetes,_Tremellales,_Tremellaceae,_Filobasidiella,_Filobasidiella/Cryptococcus_neoformans_species_complex Genome_variation_in_Cryptococcus_gattii,_an_emerging_pathogen_of_immunocompetent_hosts NA XM_003196793.1 ATGACTGCTTCTAAGGACAACGTTGTCGAGACTGGCTCAGTGCTCCGTGGGCGGCGGGTATTCGAGGATTTGCCGAACAACACCCACCGAAACTGGTGGCAGGATAAAGGATTGCGTTGGCTCACCTTTTTCCAACTGACTGGATACGCGGGTACCATCAACTCCGGATACGACGGTTCCCTGATGAATGGTCTGTTAACTATACCCCTCTTCAATGCTGCGATTGGCCATGCGAGTGGTACACGCCTTGGTTTGATCACTGCCGGCTATCCTCTCGGCTCCCTCTTCGCTTTCCAACTCGCTGCGTGGATATCTGATCGATTTGGTCGAAAAAAGGCCATCATGTGCGGAGCCATCATTACCATCATCGCAAGCTTATGTCAAGGCCTCACAAGGGGTCCTTGGGCATTTTTTGGATCCCGAATCATCCTCGGTATTGGAACGGCATTCGAGATTGTAGCTGCCCCGACCATCGTGGCCGAGATCACTCATCCTCGAACTCGAGCTCAGTCTTCTGCACTCACACAGACGTGCTATTATCTCGGATCCATTGTAGCTGCCTGGGTAACATTCGGGACTCTCACTCTCAATAGTGACTGGAGTTGGCGTATTCCGATTGTAATTATCAGGACGAAACACTTCCATAAGCTGAGCTTGCTGTGGTGGTGCCCTGAGTCCCCTCGATGGCTGCTTCGGGTTGGTCGACGAGCCGAAGCACTTGATACTTTAGCCAAATACCACGCTAATGGCGCGACTGAAGACCCGCTCGTCCAGTTTGAGTTGAACGAAATCGAAGCTGCCATTGCGCTCGAAGCGTCAATGATGTCGCAGTCTTCGTACAAGGCATTTATTCAAACTAAAGGGAACCGACATCGATTGTGGATCCTCGTCTCACTTGGTTTTGTTTCCCAATGGGTTGGCATGGGCGTTATCTCTTATTACTTCGCCGCCATCTTGCGATCAATCGGGATTATTGACCCAACGCAGCAGGCAGGCCTGAATGGGGGTCTGCAGGTGTGGAACTGGTGTTTGGCAATCAGCGGAGCTCTTGCTGTCGAGAGGCTCGGTCGTCGGCCCTTATGGCTCATTTCGACTGGGGGCTTACTTTGCACTTTCATTGTAGTTACAGCTTGCTCAGCTGTATATGCTAATACGGAAAGTAAGAGAGCAGGCTACATTGTTGTAGCGTTTCTCTTCTTGTTCAGCGGCTTCTTTGGTATCGCTTATACACCAATGGGATACTCGTACCCCATCGAGATTCTTCCTTTCGGACTCCGTGCCAAGGGCCACGCTTTGTCTCAGACATGTGTCTTCATGGCATTATTCTTCAATCAATTTGTTAACCCTATTGCGCTCGATTCAATTGGCTGGAAGTACTACATCGTCTTTATCGTCATCTGCGCAATTCAATTTGTGAACATATACTTCAGATTCCCAGAAGGCCGTACTCTTGAGGAGATCGCCGAGGTCTTTGACGGTGTCAGCATTGTACCGCCGGAAACTGAGATTGCCATAGACGAAATATGGGTACATGAAGACAAGTTGGCAGCCGAGAAGACGTAA > 389 CGB_L3710W Similar_to_TIGR_gene_model,_INSD_accession_AAW45162.1 sugar_transporter XP_003197127.1 NA MSTEDYKPDTIHVEKTSLPRSPSHQDIDTKGAEASHIEDQGAKGKEHHTPAVNIIENPLRRYSPEKVVADAHTFANSHNLVEYSDLFGRAALVAREGKHFDTIDVLTPEERAALEYERDHKWHGPWMLWYSVSLCAIGAATQGWDQTGSNGANLSYPQEFGIAGTGRDEWIVGAINSIIFLTAGCIGAFIVDPLNHYLGRRGEIFLTACCLTATPIASGFTQSWQALFAVRFVMGIGIGAKNATVPIFSAELAPARVRGALVMFWQLWVVAGIFLGFAANVIVKDTGKIAWRLQLGSAFIPAFILMLGIWFTPESPRWLMKHGKYDKAFHSFLRLRAHPIIAARDYYYSHVIYQEELHLAKGSNYFSRLWDCFKVPRIRRANYGASTVMIAQQMCGINIISFYSSTIFTDVGYTDTQALYASLGYGAVQVVFTIPTLFLIDTVGRRRLCLITFPLMCVFLLAAGLSLLNTTGSTASQIGPVVLFVYLFTICYSLGEGPVAFQYSAEVFPTIQREQGMAWAVFINNFFAGVLSITFPRMRTVMTSTGAFGFYAGLNLVAWALIFFFVRETKQLTLEEIDQVFSVPTAQFVSYEARVRVPWFFKRYFLFQKHIPTPPPMIGSTDDDDDYKNEMRRG Tremellomycetidae Cryptococcus_gattii_WM276 Cryptococcus_gattii_WM276 XM_003197079 NA DSouza,C.A.,_Kronstad,J.W.,_Taylor,G.,_Warren,R.,_Yuen,M.,_Hu,G.,_Jung,W.H.,_Sham,A.,_Kidd,S.E.,_Tangen,K.,_Lee,N.,_Zeilmaker,T.,_Sawkins,J.,_McVicker,G.,_Shah,S.,_Gnerre,S.,_Griggs,A.,_Zeng,Q.,_Bartlett,K.,_Li,W.,_Wang,X.,_Heitman,J.,_Stajich,J.E.,_Fraser,J.A.,_Meyer,W.,_Carter,D.,_Schein,J.,_Krzywinski,M.,_Kwon-Chung,K.J.,_Varma,A.,_Wang,J.,_Brunham,R.,_Fyfe,M.,_Ouellette,B.F.,_Siddiqui,A.,_Marra,M.,_Jones,S.,_Holt,R.,_Birren,B.W.,_Galagan,J.E._and_Cuomo,C.A. NA 0:1905 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_014949).COMPLETENESS:_incomplete_on_both_ends. NA 07-JUL-2011 Cryptococcus_gattii_WM276_sugar_transporter,_partial_mRNA. NA Tremellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cryptococcus_gattii_E6REF4_CRYGA.gb Filobasidiella 321264819 MBio_2_(1),_E00342-E00310_(2011) fungi XM_003197079 NA NA jelly_fungi basidiomycetes 21304167 1905 L mRNA NA WM276 NA anamorph_of_Filobasidiella_bacillispora NA forward NA NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 367775 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Tremellomycetes,_Tremellales,_Tremellaceae,_Filobasidiella,_Filobasidiella/Cryptococcus_neoformans_species_complex Genome_variation_in_Cryptococcus_gattii,_an_emerging_pathogen_of_immunocompetent_hosts NA XM_003197079.1 ATGTCGACGGAAGACTACAAGCCCGACACCATACACGTCGAGAAGACCTCTCTGCCTCGTTCGCCGTCCCACCAGGACATCGACACGAAGGGCGCCGAGGCATCTCACATCGAGGACCAGGGCGCCAAGGGCAAGGAGCACCATACTCCAGCGGTCAACATCATTGAAAACCCTTTGAGACGCTACTCTCCCGAAAAAGTCGTCGCAGATGCCCACACTTTCGCCAATAGTCACAATCTGGTCGAATATAGCGACCTCTTCGGCCGCGCTGCCCTTGTTGCCCGAGAAGGCAAGCACTTTGACACCATTGATGTGCTCACTCCAGAGGAAAGAGCTGCTCTCGAGTATGAACGAGATCACAAATGGCACGGTCCTTGGATGCTCTGGTACTCCGTTTCTCTCTGTGCTATCGGTGCTGCCACACAAGGTTGGGATCAAACCGGTTCAAATGGCGCCAACTTGTCTTACCCCCAGGAATTCGGTATTGCGGGTACGGGCCGAGACGAATGGATTGTCGGTGCAATCAACTCCATCATCTTTTTAACTGCCGGCTGTATTGGTGCATTCATCGTCGACCCTCTTAATCACTACCTCGGTCGTCGAGGTGAAATCTTCCTTACCGCCTGCTGTCTTACCGCCACTCCTATCGCCTCCGGATTCACTCAGTCTTGGCAAGCTCTCTTTGCTGTTCGTTTCGTCATGGGTATTGGTATCGGCGCAAAGAATGCTACTGTTCCCATTTTCTCTGCTGAGCTCGCTCCGGCTAGGGTCCGAGGTGCTTTGGTAATGTTCTGGCAGCTTTGGGTCGTTGCTGGTATCTTCCTTGGTTTCGCTGCCAACGTTATCGTCAAGGATACTGGCAAGATTGCCTGGCGTCTTCAACTCGGCTCTGCTTTCATTCCCGCCTTCATCCTCATGCTCGGTATCTGGTTCACCCCTGAATCACCTCGTTGGCTCATGAAGCACGGAAAGTACGACAAGGCATTCCACTCTTTCCTCCGTCTGCGAGCCCACCCTATCATTGCGGCGAGAGACTACTACTACTCTCACGTCATCTACCAGGAAGAGCTCCACTTGGCTAAGGGGTCCAACTATTTCTCCAGGCTGTGGGATTGTTTCAAGGTGCCTAGGATCAGGAGGGCGAATTACGGTGCTTCCACCGTCATGATTGCTCAGCAGATGTGCGGTATCAACATCATCTCATTCTACAGTTCAACTATCTTCACCGACGTCGGTTACACTGATACCCAGGCTCTTTACGCTTCTTTGGGTTACGGTGCCGTCCAAGTCGTGTTCACCATCCCTACACTGTTCCTGATCGATACCGTCGGTCGAAGGAGGTTATGTTTAATTACCTTCCCCCTTATGTGTGTCTTCCTTCTCGCCGCTGGTCTCTCTCTCCTCAATACCACCGGAAGCACTGCGTCTCAAATTGGCCCTGTCGTACTCTTCGTCTACCTTTTCACCATTTGTTATTCCCTCGGTGAAGGACCCGTCGCTTTCCAGTACTCTGCAGAAGTCTTCCCTACTATTCAGCGAGAACAGGGTATGGCTTGGGCCGTATTCATTAACAACTTCTTTGCCGGTGTCCTCAGTATAACTTTCCCTCGTATGCGAACTGTTATGACTTCTACCGGTGCTTTCGGTTTCTATGCGGGTCTTAACTTGGTTGCATGGGCCTTGATCTTCTTCTTCGTTAGGGAGACCAAACAATTGACTTTGGAAGAAATCGATCAGGTCTTCTCCGTCCCAACGGCCCAATTTGTATCTTACGAAGCCCGCGTTCGCGTGCCTTGGTTCTTCAAGCGATACTTCCTCTTCCAGAAGCACATTCCCACACCACCTCCTATGATTGGTAGCACGGATGATGATGATGACTACAAGAATGAAATGCGTAGAGGATAG > 390 CGB_L0070C similar_to_TIGR_gene_model,_INSD_accession_AAW43391.1 myo-inositol_transporter_1 XP_003196949.1 NA MKSQFNIFGRGFPLRLAITISCQLAFVLFGYDQGVFSGIVGNERFLDTFGHPDAGLEGIIVSIYNLGCFSGCILAFFICEKLGRRRSMWLAMSFIVVGAILQTTAFSVPHMMVARYITGIGTGIETSTVPTYQSELCEAEKRGRLVSSEPLFVGVGIEIAYWFDYGMNFKGGAIAWRLPIAFQIVFALVVVLLVFGLPESPRYLYAHGRSEEALQVLCDVYDCAPDDPKILQEQGEILQALQLEQEHGEYKWSQLFKKDEVQTGRRVLLAYGAMFMQQVSGINLVVYYVTTVLQVNVGLDRNLSLILGGAINAMFLIGSFLPALYLDQMGRRRPMMWGSFGCALSMLMIAILLSFADKGASLAHATSSASVAFFFLYMLIFGATGNCVPWAYVPEILPLHVRAKGTAIGISANWLWNFFVVMITPTIINNLKWKAYLIFMATNLIFVPTVYFFYPETSNLSLEEIDYLFLEKNAVKASLDPSARESAKAAAMDASVPQMNDDEKALNEHVENL Tremellomycetidae Cryptococcus_gattii_WM276 Cryptococcus_gattii_WM276 XM_003196901 NA DSouza,C.A.,_Kronstad,J.W.,_Taylor,G.,_Warren,R.,_Yuen,M.,_Hu,G.,_Jung,W.H.,_Sham,A.,_Kidd,S.E.,_Tangen,K.,_Lee,N.,_Zeilmaker,T.,_Sawkins,J.,_McVicker,G.,_Shah,S.,_Gnerre,S.,_Griggs,A.,_Zeng,Q.,_Bartlett,K.,_Li,W.,_Wang,X.,_Heitman,J.,_Stajich,J.E.,_Fraser,J.A.,_Meyer,W.,_Carter,D.,_Schein,J.,_Krzywinski,M.,_Kwon-Chung,K.J.,_Varma,A.,_Wang,J.,_Brunham,R.,_Fyfe,M.,_Ouellette,B.F.,_Siddiqui,A.,_Marra,M.,_Jones,S.,_Holt,R.,_Birren,B.W.,_Galagan,J.E._and_Cuomo,C.A. NA 0:1542 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_014949).COMPLETENESS:_incomplete_on_both_ends. NA 07-JUL-2011 Cryptococcus_gattii_WM276_myo-inositol_transporter_1,_partial_mRNA. NA Tremellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cryptococcus_gattii_E6REG4_CRYGA.gb Filobasidiella 321264463 MBio_2_(1),_E00342-E00310_(2011) fungi XM_003196901 NA NA jelly_fungi basidiomycetes 21304167 1542 L mRNA NA WM276 NA anamorph_of_Filobasidiella_bacillispora NA forward NA NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 367775 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Tremellomycetes,_Tremellales,_Tremellaceae,_Filobasidiella,_Filobasidiella/Cryptococcus_neoformans_species_complex Genome_variation_in_Cryptococcus_gattii,_an_emerging_pathogen_of_immunocompetent_hosts NA XM_003196901.1 ATGAAGTCACAATTCAACATTTTCGGACGTGGCTTTCCACTCCGACTTGCCATCACCATCTCTTGTCAGCTCGCCTTTGTTCTCTTCGGCTATGATCAAGGTGTGTTCTCGGGCATCGTTGGTAATGAACGATTCTTGGACACCTTTGGTCATCCAGACGCGGGACTGGAGGGCATTATCGTGTCGATCTATAATTTGGGGTGTTTTTCTGGATGCATCCTGGCTTTTTTCATCTGCGAGAAGCTAGGCAGGCGGCGCAGCATGTGGCTTGCTATGTCATTCATTGTCGTAGGCGCAATATTGCAGACCACCGCGTTCTCTGTCCCACACATGATGGTAGCGCGATACATAACTGGTATCGGTACCGGCATAGAGACATCCACTGTCCCAACATATCAATCCGAGCTCTGTGAAGCCGAAAAGCGTGGAAGATTGGTCTCCAGCGAGCCCTTATTTGTCGGTGTTGGAATCGAGATTGCGTACTGGTTCGATTATGGTATGAACTTCAAAGGTGGAGCGATTGCATGGAGGCTGCCGATCGCTTTCCAGATTGTCTTCGCCTTGGTTGTCGTGTTGCTTGTATTTGGACTTCCGGAATCGCCGCGATACCTATATGCACATGGTCGATCCGAAGAGGCGCTTCAGGTCTTATGTGACGTGTACGACTGTGCGCCTGACGATCCCAAGATTCTTCAAGAACAGGGCGAGATTCTGCAAGCACTTCAACTCGAACAAGAGCATGGCGAGTATAAATGGAGTCAGCTCTTCAAGAAAGATGAAGTGCAGACCGGTCGACGAGTCTTACTCGCCTATGGCGCGATGTTCATGCAGCAAGTTTCGGGTATCAACCTTGTCGTTTACTACGTAACAACCGTTCTTCAAGTAAACGTTGGACTTGACCGTAACCTGTCACTTATCCTTGGAGGTGCGATCAACGCCATGTTCTTAATAGGCTCTTTCTTGCCCGCCCTCTACCTAGATCAGATGGGTCGTCGCCGACCCATGATGTGGGGCAGTTTCGGTTGCGCCCTGTCTATGTTGATGATAGCAATACTACTGAGCTTTGCGGACAAAGGCGCGTCACTGGCACACGCCACGAGTAGCGCCAGCGTAGCATTTTTCTTCTTGTACATGCTCATCTTTGGCGCGACTGGCAACTGTGTTCCATGGGCGTATGTCCCGGAAATTTTACCCTTGCATGTCAGGGCCAAAGGTACTGCCATCGGGATCTCCGCAAACTGGCTTTGGAACTTTTTCGTTGTCATGATCACTCCAACTATCATCAACAACCTTAAGTGGAAGGCATATCTAATCTTCATGGCGACCAATTTAATTTTCGTTCCAACGGTGTACTTCTTCTACCCCGAAACATCGAACCTTTCTCTTGAGGAAATTGACTACCTGTTCCTTGAAAAGAATGCCGTCAAGGCATCTCTTGATCCGTCGGCTCGGGAGTCCGCGAAAGCTGCAGCCATGGACGCTTCTGTACCGCAAATGAACGACGATGAGAAGGCGCTCAACGAACACGTGGAGAATCTCTAG > 391 CNBN2130 Match_to_EST_gb|CF187137.1|CF187137;_Similar_to_gi|46139335|ref|XP_391358.1|_hypothetical_protein_FG11182.1_Gibberella_zeae_PH-1,_FASTA_scores:_opt:_1273,_E():_6.7e-69,_(40.129%_identity_(76.609%_similar)_in_466_aa_overlap_(25-488:10-469));_HMMPfam_hit_to_Sugar_tr,_Sugar_(and_other)_transporter,_score:_322.6,_E():_5.5e-94 hypothetical_protein XP_771814.1 NA MAPGHSVSSKFVFAEYQNNAHPQWWKDPGMRRGNLVILLYMVAQATGGYDKSLINNLQSIPTWEAVVGHPTGSALGVVTAMLSIGVIVGSPFFGWLSDWRGRKITMFIGSCIMLVGAILQAAATNRDFFIGGRFLIGFGVAGTLCSGPLLASEIAHPRQRSVVASFYNTFWYVGSIICAWLSFGTAYLSNDWAWRIPCIGQAVPALILVCIGMWLPESPRYLMKKNRTDEALAILARYHANGDESDPLVQFELQEIKQTLDAEAMYETKGWIKPWLDLVSTGSNRYRMFIITIMVIGIDWCGTSITSYYLSTILSSVGITSATQQTGINGGLQVFNWLTSVAGAMLVERLGRRALWLTSFGGMLAVNVPFGACSALYAKRGDLAAGRAVVALVFLYNGFYNIGCNPLPYAYAVEILPYNIRAKGLAFEVAFDASQGVLGQWTNPIAMDALGWKFYFVYTAFLVLIVLAVYFTFPETKGLTLEEIKEVFGDRDSVNPAVPDDYDPAEAKSDDAKVDIKDVPVTVTR Tremellomycetidae Cryptococcus_neoformans_var._neoformans_B-3501A Cryptococcus_neoformans_var._neoformans_B-3501A XM_766721 NA Fung,E.,_Hyman,R.W.,_Rowley,D.,_Bruno,D.,_Miranda,M.,_Fukushima,M.,_Wickes,B.L.,_Fu,J._and_Davis,R.W. NA 0:1578 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_009190).COMPLETENESS:_incomplete_on_both_ends. NA 21-MAR-2008 Cryptococcus_neoformans_var._neoformans_B-3501A_hypothetical_protein_(CNBN2130)_partial_mRNA. NA Tremellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cryptococcus_neoformans_Q55HA4_CRYNE.gb Filobasidiella 134119065 Unpublished fungi XM_766721 NA NA jelly_fungi basidiomycetes NA 1578 14 mRNA 283643 B-3501A neoformans Filobaxidiella_neoformans NA forward NA NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 283643 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Tremellomycetes,_Tremellales,_Tremellaceae,_Filobasidiella,_Filobasidiella/Cryptococcus_neoformans_species_complex Cryptococcus_neoformans_serotype_D_sequencing Filobasidiella_neoformans_var._neoformans XM_766721.1 ATGGCTCCAGGTCACAGCGTATCAAGCAAGTTCGTTTTCGCTGAATACCAGAACAATGCCCATCCACAATGGTGGAAAGATCCTGGGATGAGACGAGGCAACCTTGTCATACTGCTTTACATGGTAGCTCAAGCGACGGGTGGCTATGACAAAAGTCTCATCAACAACTTACAAAGTATTCCTACCTGGGAAGCCGTCGTGGGTCATCCTACTGGATCCGCATTGGGTGTCGTCACCGCTATGCTGTCCATCGGTGTCATAGTTGGTTCACCGTTTTTTGGTTGGTTAAGTGATTGGAGAGGCCGGAAAATTACTATGTTCATCGGTTCCTGTATCATGCTGGTCGGTGCTATTCTACAAGCTGCAGCGACTAATAGAGACTTTTTCATTGGTGGTCGATTCTTGATTGGTTTCGGTGTCGCTGGGACCTTATGTTCAGGCCCGCTTTTAGCCTCTGAAATTGCACACCCTCGTCAGCGTAGTGTCGTCGCGTCATTTTATAACACGTTCTGGTACGTCGGCAGTATTATCTGCGCTTGGTTATCTTTTGGAACTGCCTACCTTTCCAATGACTGGGCATGGAGGATCCCCTGCATTGGACAAGCTGTGCCCGCACTCATCCTTGTCTGTATCGGAATGTGGCTTCCAGAAAGCCCCCGCTACCTAATGAAAAAGAATCGTACAGATGAAGCTCTGGCAATTTTGGCTCGTTACCACGCCAACGGTGACGAATCTGATCCTTTGGTACAATTCGAATTGCAAGAAATCAAACAAACGCTCGATGCTGAGGCGATGTACGAGACTAAAGGATGGATCAAACCTTGGCTCGACCTCGTTTCGACCGGTTCGAACCGGTACAGGATGTTTATCATTACCATTATGGTTATCGGTATTGACTGGTGTGGAACATCAATAACCTCCTACTATCTATCCACTATTCTGTCTTCTGTAGGTATCACATCTGCAACCCAACAAACTGGGATTAACGGCGGTCTTCAAGTCTTCAACTGGCTTACTTCGGTCGCCGGTGCCATGCTCGTTGAACGCCTTGGTCGTCGGGCCCTTTGGCTGACCAGCTTTGGAGGAATGCTTGCAGTTAATGTACCATTCGGAGCTTGCAGCGCGTTATACGCTAAGCGCGGCGATTTAGCTGCTGGTCGAGCTGTAGTTGCCTTGGTATTTCTCTATAACGGGTTCTACAACATTGGCTGTAATCCCTTACCATACGCTTATGCTGTCGAGATCTTGCCATACAACATCCGTGCAAAGGGGTTGGCATTTGAGGTTGCTTTTGACGCTTCTCAAGGTGTTTTGGGGCAATGGACAAATCCCATCGCTATGGATGCTCTGGGATGGAAATTCTATTTCGTCTATACCGCATTTCTCGTGCTCATCGTGCTCGCTGTCTACTTTACATTCCCCGAAACAAAAGGCCTCACTCTTGAGGAGATTAAGGAAGTTTTTGGAGATCGAGACTCAGTGAATCCCGCCGTACCAGACGACTATGACCCTGCCGAGGCAAAGAGCGACGATGCCAAAGTCGACATCAAGGATGTACCTGTAACAGTTACTAGATAA > 392 CNBI0010 HMMPfam_hit_to_Sugar_tr,_Sugar_(and_other)_transporter,_score:_392.4,_E():_5.7e-115 hypothetical_protein XP_773635.1 NA MVKTRAPDREHIPPLSNFDIDLHPDTVGYVQDSQALADAIGSNGLKDVFASPIVFMAAFSACMGGLLFGFDQGILSIVLTIPQFLKVFPETDISVTSSAGLNKGVMTALLELGAFLGAMQAGFISDKISRKRTIMVGACWFVVGSALQAGSKSFAMLVIGRFIGGIGVGVLSSTAPTYISEIAPPNVRGAFLALEGSSIVIGIVIMFYITYATRHILDSWSFRLPFTIQVVPCIALGIGLWLLPYSPRWLATVGRDQDALDSLVRLRQLPSSDPRLQAEWITIRAEAIQQREVVISAHPHLQGESGFVQDFKLEMHAWIDMFKPNIIARTMIGVMLMVFQQLQGINALIYYSPTLFEQLGLDYEMQLTMSGVINVSQCVATIVAFFLLDRIGRKPPLLIGSVVNAICHFTVAGLIAKYSDNWAAHQSAAWAGVGLLITFMFFFGIGWSPVPWALPAEIHSSSRRAKGVAITTCSNWFFNFIVGLITPPMLQSIRYGTFIFFGAFAVMSGIWAWFLCPETKGLTLEAVDQLFHNHAAQEELRQKHDIISRMIGMELTTTPQPELVDDEKKIYTVQHLESV Tremellomycetidae Cryptococcus_neoformans_var._neoformans_B-3501A Cryptococcus_neoformans_var._neoformans_B-3501A XM_768542 NA Fung,E.,_Hyman,R.W.,_Rowley,D.,_Bruno,D.,_Miranda,M.,_Fukushima,M.,_Wickes,B.L.,_Fu,J._and_Davis,R.W. NA 0:1740 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_009185).COMPLETENESS:_incomplete_on_both_ends. NA 21-MAR-2008 Cryptococcus_neoformans_var._neoformans_B-3501A_hypothetical_protein_(CNBI0010)_partial_mRNA. NA Tremellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cryptococcus_neoformans_Q55ML1_CRYNE.gb Filobasidiella 134115346 Unpublished fungi XM_768542 NA NA jelly_fungi basidiomycetes NA 1740 9 mRNA 283643 B-3501A neoformans Filobaxidiella_neoformans NA forward NA NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 283643 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Tremellomycetes,_Tremellales,_Tremellaceae,_Filobasidiella,_Filobasidiella/Cryptococcus_neoformans_species_complex Cryptococcus_neoformans_serotype_D_sequencing Filobasidiella_neoformans_var._neoformans XM_768542.1 ATGGTCAAGACCCGTGCCCCCGACCGAGAGCATATCCCGCCACTCTCAAACTTCGACATCGACCTTCACCCTGACACTGTCGGATACGTTCAGGACTCGCAGGCCTTGGCGGACGCCATCGGATCCAATGGCCTCAAAGATGTATTCGCCAGTCCCATCGTCTTCATGGCTGCCTTCTCAGCATGCATGGGCGGTCTGCTATTCGGCTTCGACCAAGGTATTCTCTCCATCGTCTTGACTATCCCGCAATTCCTAAAGGTCTTCCCCGAGACTGATATCAGCGTCACTTCTTCTGCCGGTCTTAACAAAGGTGTCATGACTGCGCTGCTTGAGCTTGGTGCTTTCCTCGGCGCTATGCAAGCTGGTTTCATTTCCGACAAAATCTCGCGGAAACGTACAATCATGGTTGGTGCTTGCTGGTTCGTTGTTGGAAGCGCTCTGCAAGCGGGATCCAAGTCATTTGCAATGTTAGTCATTGGCCGTTTCATCGGTGGTATTGGAGTCGGCGTTCTATCCTCCACCGCACCAACCTACATTTCAGAGATTGCCCCGCCCAACGTGAGAGGTGCTTTCCTCGCCCTAGAAGGCTCCAGCATTGTGATCGGTATTGTCATCATGTTCTACATTACTTACGCCACCCGCCACATCTTGGACAGCTGGAGTTTCCGTTTGCCTTTCACCATCCAGGTTGTTCCTTGTATCGCTCTTGGGATTGGTTTGTGGCTGTTACCCTACTCCCCCCGTTGGCTGGCTACAGTTGGACGCGATCAAGATGCCCTGGATTCACTCGTCCGTCTCCGTCAACTTCCTTCCTCGGATCCTCGTCTTCAGGCAGAGTGGATCACTATCCGCGCCGAGGCTATTCAGCAACGGGAAGTCGTCATCAGCGCTCACCCCCATCTGCAAGGAGAAAGCGGCTTCGTTCAAGACTTTAAGCTTGAGATGCACGCTTGGATCGACATGTTCAAGCCCAACATCATCGCCAGGACCATGATCGGTGTCATGCTCATGGTATTCCAACAGCTCCAAGGCATCAACGCCCTCATCTACTACTCGCCCACGTTATTCGAGCAATTGGGTTTGGACTACGAAATGCAGCTTACAATGAGCGGCGTGATCAACGTCTCGCAATGCGTCGCTACCATCGTGGCCTTCTTCCTGCTTGACAGGATTGGCAGAAAGCCCCCTCTCTTGATCGGCTCGGTCGTCAACGCCATCTGTCATTTCACTGTAGCTGGTTTGATCGCCAAATACTCCGATAACTGGGCGGCTCACCAGAGCGCCGCTTGGGCTGGTGTTGGCCTTTTGATAACCTTTATGTTCTTCTTCGGTATTGGTTGGTCTCCCGTCCCCTGGGCATTGCCTGCTGAGATCCACTCGTCGAGCCGACGTGCGAAGGGTGTGGCCATCACCACCTGCTCCAACTGGTTCTTTAACTTTATCGTCGGCCTCATCACCCCTCCAATGCTCCAGAGCATCCGTTACGGAACGTTCATTTTCTTCGGCGCTTTTGCAGTCATGTCAGGTATCTGGGCTTGGTTCTTGTGCCCTGAGACCAAGGGCTTGACCCTCGAGGCCGTGGACCAGCTCTTCCACAACCACGCGGCCCAGGAGGAGCTCAGACAGAAGCACGACATTATCAGTCGTATGATCGGCATGGAGCTCACCACCACTCCCCAACCGGAGCTGGTGGACGACGAAAAGAAGATCTACACGGTCCAGCATTTGGAGTCAGTTTAG > 393 CNBG3300 HMMPfam_hit_to_Sugar_tr,_Sugar_(and_other)_transporter,_score:_433.2,_E():_2.9e-127 hypothetical_protein XP_774349.1 NA MAPRSSKKALTLCLFQSLAGVIFGWSNSEGSGLFSMSKYQERFGECIDGVCTLSTTRQSAITGLLSVGAVIGAVGSGSIADRFGLRLTCMVFIFIYLCGAAIETSAFNTYGQLCVARLLTGLGVGATSGLVPVFQAEASPPRYRGLVTGSFQLCVTLGIWGVAMTNWGMSSYAGDVSWRIPVSLQMVWAALLLVGFLFSPESPRFLAKKGRWDHCRKNLANLRGLPTDHPDIDTEMEEVREATIKDQERGQASYVECFSTKDRILWRTMIGICVQIGQQITGINFFFSYGVQFAQTAGLDDTYVFQIILASVNVVFSFPGILAVDRAGRRPILLIGGILMFIGQIVVGAVSKAYPDDKIAGDVLIAFTCLFIASFASSWGPIAWVVCGETFPIRLSSRCVTLGTGANWLFNLIIAFAAPQIQARIGTGITFVWAGCLALAISFAFFCIPETRSMSIEAIDALYLSHTPAWRSHKFVDEQLTRTQNAQEKHYSRSIHAENEQVKSSQQTSARTSAEDGRMV Tremellomycetidae Cryptococcus_neoformans_var._neoformans_B-3501A Cryptococcus_neoformans_var._neoformans_B-3501A XM_769256 NA Fung,E.,_Hyman,R.W.,_Rowley,D.,_Bruno,D.,_Miranda,M.,_Fukushima,M.,_Wickes,B.L.,_Fu,J._and_Davis,R.W. NA 0:1563 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_009183).COMPLETENESS:_incomplete_on_both_ends. NA 21-MAR-2008 Cryptococcus_neoformans_var._neoformans_B-3501A_hypothetical_protein_(CNBG3300)_partial_mRNA. NA Tremellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cryptococcus_neoformans_Q55P82_CRYNE.gb Filobasidiella 134114202 Unpublished fungi XM_769256 NA NA jelly_fungi basidiomycetes NA 1563 7 mRNA 283643 B-3501A neoformans Filobaxidiella_neoformans NA forward NA NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 283643 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Tremellomycetes,_Tremellales,_Tremellaceae,_Filobasidiella,_Filobasidiella/Cryptococcus_neoformans_species_complex Cryptococcus_neoformans_serotype_D_sequencing Filobasidiella_neoformans_var._neoformans XM_769256.1 ATGGCTCCCAGGAGTTCCAAGAAGGCTTTGACCCTCTGTCTTTTCCAGAGTTTGGCGGGTGTTATTTTCGGATGGAGTAACTCTGAAGGTTCTGGTCTGTTCTCCATGTCAAAGTACCAAGAACGATTCGGTGAATGTATCGACGGCGTTTGCACCCTTTCAACTACTCGACAATCTGCCATTACCGGTCTTTTGTCTGTCGGCGCCGTCATTGGTGCTGTTGGTTCTGGTTCTATCGCTGACCGATTCGGTTTGCGATTGACCTGTATGGTTTTCATCTTCATCTACCTTTGTGGTGCTGCCATCGAGACTTCTGCCTTTAACACCTATGGTCAACTATGCGTGGCTCGTCTTCTCACCGGTCTCGGTGTCGGTGCTACTTCTGGTCTTGTTCCCGTTTTCCAGGCTGAGGCTTCTCCTCCTCGATACCGAGGTCTCGTCACTGGTTCTTTCCAGCTTTGTGTTACTCTTGGTATCTGGGGTGTTGCCATGACCAACTGGGGTATGAGCTCTTATGCCGGTGATGTCTCATGGCGAATCCCCGTATCTCTTCAAATGGTCTGGGCTGCTTTGTTGCTCGTCGGTTTCCTCTTTTCCCCTGAGTCTCCTCGATTCCTTGCCAAGAAGGGCAGATGGGACCACTGCCGAAAGAACCTTGCCAATCTCCGTGGTCTTCCTACTGATCACCCTGACATCGATACCGAGATGGAAGAAGTCCGTGAGGCTACCATCAAAGACCAGGAGCGCGGTCAGGCCAGCTATGTCGAATGTTTCTCTACCAAGGACCGAATTCTCTGGCGAACTATGATCGGTATCTGTGTCCAAATTGGCCAGCAAATCACCGGTATCAACTTCTTCTTCTCTTACGGTGTCCAGTTCGCCCAGACTGCCGGTCTTGACGACACCTACGTCTTCCAGATCATTCTCGCTTCCGTCAACGTCGTTTTCTCTTTCCCCGGTATTCTTGCTGTCGACCGAGCGGGTCGACGACCTATCCTCCTCATTGGTGGCATTCTCATGTTTATTGGTCAGATTGTTGTCGGTGCTGTCTCCAAGGCCTACCCTGATGACAAGATTGCCGGTGATGTTCTCATTGCCTTCACCTGTCTTTTCATTGCCTCTTTCGCGTCTTCTTGGGGTCCCATTGCCTGGGTTGTCTGCGGTGAGACTTTCCCCATTAGGTTGTCTTCTAGGTGTGTCACCCTCGGTACCGGTGCCAACTGGCTCTTCAACCTCATCATCGCCTTTGCCGCTCCTCAGATTCAGGCCCGAATCGGTACTGGTATCACTTTTGTTTGGGCCGGTTGTCTCGCTCTCGCTATCTCTTTTGCCTTCTTCTGCATTCCCGAGACGAGATCGATGAGTATCGAGGCGATTGACGCCCTCTATCTCTCCCACACCCCAGCTTGGCGATCTCATAAGTTTGTCGACGAGCAGCTCACGAGGACTCAAAACGCGCAAGAGAAGCACTACTCTCGATCTATCCACGCCGAGAACGAGCAGGTCAAGTCTAGCCAGCAGACTAGCGCCCGAACGAGTGCTGAGGACGGCAGGATGGTCTAA > 394 CNBB3000 Match_to_ESTs_gb|CF189655.1|CF189655,_gb|CF189343.1|CF189343,_gb|CF189721.1|CF189721;_HMMPfam_hit_to_Sugar_tr,_Sugar_(and_other)_transporter,_score:_463.2,_E():_2.7e-136 hypothetical_protein XP_777068.1 NA MISVPGGPGVLSAPLSPERVEAPVTVKAYLLCVFASFGGIFFGFDSGYMNGVLGMNYFINMMTGLPIPGADADQATKDAFTLPAWEKSLITSILSAGTFFGAIIAGDLADYFGRRITIVSGCCVFIVGCCLQTASTGLGLLVAGRLIAGFGVGFISAIIILYMSEIAPRKVRGAIVSGYQFCITIGLLLSSCVCYATQNRTDSGSYRIPIAIQFAWALILGGGLLLLPESPRWYVKAGKIEQARKALSRVRGQPVDSDYIKDEIAEIVANHEYETELTPNVTYLSSWAACFTGGIRNPGSNLRRTLLGISMQMMQQWTGVNFIFYFGTTFFTDLGTISNPFLISLITTLVNVCSTPVSFWTIERFGRRPLLIYGALGMLICEFIVGIIGVAKPGDTTVVKVQISFICIYVFFFASTWGPGAWVSIGEIFPLPIRARGVGLSTASNWLWNCIIAVITPYLVGTDEANLGSKVFFLWGSTCILCFIYAYLFVWETKGLTLEQVDRMMEECGSPRRSAGWKPHTTFAAEAAQGTHGLDQNEKAKVGPVLSQSEMLEQV Tremellomycetidae Cryptococcus_neoformans_var._neoformans_B-3501A Cryptococcus_neoformans_var._neoformans_B-3501A XM_771975 NA Fung,E.,_Hyman,R.W.,_Rowley,D.,_Bruno,D.,_Miranda,M.,_Fukushima,M.,_Wickes,B.L.,_Fu,J._and_Davis,R.W. NA 0:1668 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_009178).COMPLETENESS:_incomplete_on_both_ends. NA 21-MAR-2008 Cryptococcus_neoformans_var._neoformans_B-3501A_hypothetical_protein_(CNBB3000)_partial_mRNA. NA Tremellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cryptococcus_neoformans_Q55XR4_CRYNE.gb Filobasidiella 134108233 Unpublished fungi XM_771975 NA NA jelly_fungi basidiomycetes NA 1668 2 mRNA 283643 B-3501A neoformans Filobaxidiella_neoformans NA forward NA NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 283643 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Tremellomycetes,_Tremellales,_Tremellaceae,_Filobasidiella,_Filobasidiella/Cryptococcus_neoformans_species_complex Cryptococcus_neoformans_serotype_D_sequencing Filobasidiella_neoformans_var._neoformans XM_771975.1 ATGATATCAGTGCCTGGTGGTCCTGGCGTCCTCTCGGCGCCTCTCAGCCCCGAGCGGGTGGAGGCTCCTGTGACTGTTAAGGCTTATCTCCTTTGTGTCTTTGCCTCTTTCGGTGGTATCTTTTTCGGCTTCGATTCTGGTTACATGAACGGCGTGTTGGGTATGAATTACTTCATCAACATGATGACGGGTCTTCCTATTCCTGGCGCCGATGCGGATCAGGCGACCAAAGATGCCTTCACTCTGCCAGCTTGGGAGAAGTCTTTGATCACTTCCATTCTTTCTGCCGGAACGTTCTTTGGTGCGATCATCGCTGGTGACCTTGCCGACTACTTCGGTCGAAGGATTACTATCGTTTCTGGTTGTTGTGTATTTATCGTTGGTTGCTGTCTGCAGACTGCTTCAACTGGCCTCGGCTTGCTGGTGGCCGGTCGTCTCATCGCTGGGTTTGGTGTCGGTTTCATTTCAGCGATCATCATTCTCTACATGTCGGAGATCGCTCCTCGAAAGGTTCGAGGTGCTATTGTCTCGGGTTACCAGTTTTGCATCACTATTGGTCTTCTTCTTTCCTCTTGTGTATGTTACGCAACTCAGAACCGGACCGATAGCGGGTCATACCGTATCCCCATCGCCATTCAGTTTGCCTGGGCTCTTATCCTCGGTGGTGGTCTCCTTTTGCTTCCAGAGTCTCCTCGTTGGTATGTCAAGGCCGGCAAGATCGAACAGGCAAGAAAGGCACTGTCTCGAGTCCGAGGTCAACCTGTGGACTCTGATTACATCAAGGATGAAATCGCCGAAATTGTGGCCAATCACGAGTACGAGACTGAGCTTACTCCCAATGTGACTTACCTCTCCTCTTGGGCTGCCTGTTTCACTGGTGGTATTCGCAACCCTGGTTCTAACCTTCGTCGAACCCTTCTCGGTATTTCCATGCAAATGATGCAGCAATGGACTGGTGTCAACTTCATCTTCTACTTTGGAACCACCTTCTTCACCGACCTTGGGACTATCTCGAACCCCTTCTTGATTTCTCTCATCACTACTTTAGTCAACGTCTGCTCCACACCTGTGTCCTTCTGGACTATCGAGCGATTTGGTCGACGACCCCTTCTTATCTATGGTGCCCTCGGTATGCTTATCTGCGAGTTCATTGTCGGTATCATCGGTGTCGCCAAGCCTGGAGACACTACAGTCGTTAAGGTGCAGATCTCCTTCATTTGCATTTACGTCTTCTTCTTCGCGTCAACTTGGGGTCCAGGCGCTTGGGTTTCTATTGGTGAAATTTTCCCATTGCCTATCAGAGCGCGAGGTGTTGGTCTCTCCACCGCCTCTAACTGGCTATGGAACTGTATTATCGCCGTCATTACTCCTTATCTTGTTGGAACTGACGAGGCTAACCTCGGTTCAAAAGTCTTTTTCCTTTGGGGTTCAACCTGTATTCTCTGCTTTATCTACGCCTATCTCTTTGTATGGGAGACCAAGGGCCTCACTCTGGAACAGGTTGATAGGATGATGGAAGAATGCGGGAGCCCCAGACGCTCAGCGGGTTGGAAACCCCATACCACGTTTGCAGCTGAAGCTGCCCAGGGTACACATGGGCTTGACCAGAATGAGAAAGCGAAAGTTGGACCTGTGTTATCACAGTCAGAGATGTTGGAGCAAGTTTAA > 395 CNBB0080 HMMPfam_hit_to_Sugar_tr,_Sugar_(and_other)_transporter,_score:_182.1,_E():_1.1e-51 hypothetical_protein XP_777434.1 NA MTSDQQHPHSGFHDIQAIPLEMNEKDNELIHTERLQTAEEIRKTMSKGEAVQMRSKFADLGTIQALKEYKLLGFVAMAAAFSASLDGYQINLNGGIVSNKGFIQQMAAPGTEAIDGKYVSAWGGIQSAGQTLGQIFLQYATDALGRKYALYILWVFLVASIFAETFASHWSHWLVAKLFSGMGVGMLQATMPVYLSEVAPSQLRGFFINAYSFWFCLGQLAASIALNELNDMKPYDFRTAIYTQWPMVGVMGIVFLLLPESPWWLVSKGKLEKGSKMLSRYQGHLQGYSVEEEVAIMTATLEEAKLIAKRQGQEGQLAVFKGSNLLRLFIASWPKMIQQFVGLSVFNTYATYFFQLAGNSNPFLVTVILSCVQLISMLITVSLSDNIGRRPLTVYPYGITVLSVLSLGIIGCFDYTSKSLGSLLIFFACLATFSTTGASAIGYAYAAEIPTQRLRAQTAGWGLALSNMVAIMFSFCTPLMLNGKAKWNVKTGFFFAGTGSVATVVGWFILPEVARRTPAEIDELFEKKVNPRKFKGYVTDVEISYREANETSA Tremellomycetidae Cryptococcus_neoformans_var._neoformans_B-3501A Cryptococcus_neoformans_var._neoformans_B-3501A XM_772341 NA Fung,E.,_Hyman,R.W.,_Rowley,D.,_Bruno,D.,_Miranda,M.,_Fukushima,M.,_Wickes,B.L.,_Fu,J._and_Davis,R.W. NA 0:1662 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_009178).COMPLETENESS:_incomplete_on_both_ends. NA 21-MAR-2008 Cryptococcus_neoformans_var._neoformans_B-3501A_hypothetical_protein_(CNBB0080)_partial_mRNA. NA Tremellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cryptococcus_neoformans_Q5KLD0_CRYNE.gb Filobasidiella 134107645 Unpublished fungi XM_772341 NA NA jelly_fungi basidiomycetes NA 1662 2 mRNA 283643 B-3501A neoformans Filobaxidiella_neoformans NA forward NA NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 283643 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Tremellomycetes,_Tremellales,_Tremellaceae,_Filobasidiella,_Filobasidiella/Cryptococcus_neoformans_species_complex Cryptococcus_neoformans_serotype_D_sequencing Filobasidiella_neoformans_var._neoformans XM_772341.1 ATGACCTCCGACCAACAGCACCCTCACTCAGGGTTCCACGATATTCAAGCTATCCCTCTCGAGATGAACGAGAAAGACAATGAGCTCATTCACACTGAACGTCTTCAAACCGCCGAAGAGATTCGAAAGACCATGTCCAAGGGCGAGGCGGTGCAGATGAGGTCCAAGTTTGCCGACTTGGGTACCATCCAAGCCCTCAAGGAATACAAGCTCTTAGGTTTCGTCGCAATGGCAGCGGCCTTCAGTGCTTCACTTGACGGCTACCAAATCAACTTGAACGGTGGTATCGTCTCCAACAAAGGTTTCATTCAACAGATGGCAGCCCCAGGCACTGAAGCTATCGATGGAAAGTACGTCTCGGCATGGGGTGGTATCCAATCTGCCGGCCAAACCTTAGGGCAAATCTTTCTTCAATACGCTACAGACGCTCTCGGTCGAAAATACGCCCTCTATATCCTATGGGTCTTCCTCGTAGCTTCCATCTTCGCCGAAACCTTTGCTAGCCACTGGTCCCACTGGCTTGTCGCCAAACTCTTCTCTGGTATGGGTGTCGGTATGTTGCAAGCAACGATGCCGGTCTATTTGAGTGAAGTAGCGCCTTCTCAGCTTCGAGGTTTCTTCATCAACGCCTACTCATTTTGGTTTTGCCTCGGTCAACTTGCAGCTTCTATCGCGCTCAATGAGCTCAACGATATGAAGCCTTACGATTTCCGAACTGCCATTTACACTCAGTGGCCAATGGTCGGTGTCATGGGTATCGTCTTCCTCTTACTGCCTGAATCTCCTTGGTGGCTTGTCAGTAAAGGCAAGCTTGAAAAGGGTTCCAAAATGTTGTCAAGATATCAAGGTCATCTCCAAGGCTACTCCGTTGAAGAAGAAGTTGCCATCATGACAGCTACACTGGAAGAAGCCAAGCTCATCGCCAAACGTCAAGGACAAGAAGGTCAATTGGCAGTATTCAAGGGAAGCAACTTACTCCGTCTGTTCATTGCTTCTTGGCCGAAAATGATTCAGCAATTCGTTGGTCTCTCTGTCTTCAACACTTACGCTACCTACTTCTTCCAACTTGCGGGTAACAGCAACCCCTTCCTCGTTACCGTCATCCTCTCCTGTGTCCAGCTCATTTCTATGCTCATCACCGTCTCCCTCAGTGACAATATCGGCCGTCGACCGCTTACTGTCTACCCATATGGAATCACTGTCCTCTCTGTTCTTTCGCTTGGTATTATCGGCTGTTTCGACTACACCAGCAAATCTCTCGGTTCTCTCCTGATCTTCTTCGCATGTCTCGCCACCTTCTCAACTACCGGCGCTTCCGCTATCGGCTACGCCTATGCTGCTGAAATCCCTACTCAACGACTTCGAGCCCAAACTGCAGGCTGGGGTCTTGCGTTGTCCAACATGGTTGCCATCATGTTCTCTTTCTGCACTCCGCTCATGCTTAATGGTAAGGCTAAATGGAATGTCAAGACGGGATTCTTCTTTGCCGGAACAGGCTCGGTCGCTACTGTTGTTGGGTGGTTTATCCTTCCTGAAGTTGCCCGTAGGACACCTGCCGAGATCGACGAGCTGTTTGAGAAGAAGGTCAATCCACGCAAGTTCAAAGGCTATGTTACAGACGTCGAGATCTCTTATCGAGAGGCAAACGAGACTTCTGCTTAA > 396 CNB02680 NA glucose_transporter XP_568855.1 NA MPGGPGVLSAPLSPERVEAPVTVKAYLLCVFASFGGIFFGFDSGYMNGVLGMNYFINMMTGLPIPGADADQATKDAFTLPAWEKSLITSILSAGTFFGAIIAGDLADYFGRRITIVSGCCVFIVGCCLQTASTGLGLLVAGRLIAGFGVGFISAIIILYMSEIAPRKVRGAIVSGYQFCITIGLLLSSCVCYATQNRTDSGSYRIPIAIQFAWALILGGGLLLLPESPRWYVKAGKIEQARKALSRVRGQPVDSDYIKDEIAEIVANHEYETELTPNVTYLSSWAACFTGGIRNPGSNLRRTLLGISMQMMQQWTGVNFIFYFGTTFFTDLGTISNPFLISLITTLVNVCSTPVSFWTIERFGRRPLLIYGALGMLICEFIVGIIGVAKPGDTTVVKVQISFICIYVFFFASTWGPGAWVSIGEIFPLPIRARGVGLSTASNWLWNCIIAVITPYLVGTDEANLGSKVFFLWGSTCILCFIYAYLFVWETKGLTLEQVDRMMEECGSPRRSAGWKPHTTFAAEAAQGTHGLDQNEKAKVGPVLSQSEMLEQV Tremellomycetidae Cryptococcus_neoformans_var._neoformans_JEC21 Cryptococcus_neoformans_var._neoformans_JEC21_(Filobasidiella_neoformans_var._neoformans_strain_JEC21) XM_568855 136..1794 Loftus,B.J.,_Fung,E.,_Roncaglia,P.,_Rowley,D.,_Amedeo,P.,_Bruno,D.,_Vamathevan,J.,_Miranda,M.,_Anderson,I.J.,_Fraser,J.A.,_Allen,J.E.,_Bosdet,I.E.,_Brent,M.R.,_Chiu,R.,_Doering,T.L.,_Donlin,M.J.,_DSouza,C.A.,_Fox,D.S.,_Grinberg,V.,_Fu,J.,_Fukushima,M.,_Haas,B.J.,_Huang,J.C.,_Janbon,G.,_Jones,S.J.,_Koo,H.L.,_Krzywinski,M.I.,_Kwon-Chung,J.K.,_Lengeler,K.B.,_Maiti,R.,_Marra,M.A.,_Marra,R.E.,_Mathewson,C.A.,_Mitchell,T.G.,_Pertea,M.,_Riggs,F.R.,_Salzberg,S.L.,_Schein,J.E.,_Shvartsbeyn,A.,_Shin,H.,_Shumway,M.,_Specht,C.A.,_Suh,B.B.,_Tenney,A.,_Utterback,T.R.,_Wickes,B.L.,_Wortman,J.R.,_Wye,N.H.,_Kronstad,J.W.,_Lodge,J.K.,_Heitman,J.,_Davis,R.W.,_Fraser,C.M._and_Hyman,R.W. NA 0:1659 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_006684)._The_reference_sequence_was_derived_frommrna.CNB02680.1.This_record_represents_the_complete_annotated_sequence_of_the_C.neoformans_JEC21_genome._A_small_number_of_gaps_exist_which_arerepresented_by_NNNNs_within_the_final_sequence._The_genome_has_beenannotated_by_TIGR_and_the_annotation_data_is_available_for_viewingand_download_from_the_TIGR_database(http://www.tigr.org/tdb/e2k1/cna1/). NA 14-AUG-2010 Cryptococcus_neoformans_var._neoformans_JEC21_chromosome_2. NA Tremellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cryptococcus_neoformans_Q5KM76_CRYNE.gb Filobasidiella 58262889 Science_307_(5713),_1321-1324_(2005) fungi XM_568855 NA NA jelly_fungi basidiomycetes 15653466 1659 2 mRNA 214684 JEC21 neoformans Filobaxidiella_neoformans NA forward NA NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 214684 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Tremellomycetes,_Tremellales,_Tremellaceae,_Filobasidiella,_Filobasidiella/Cryptococcus_neoformans_species_complex The_genome_of_the_basidiomycetous_yeast_and_human_pathogen_Cryptococcus_neoformans Filobasidiella_neoformans_var._neoformans XM_568855.1 ATGCCTGGTGGTCCTGGCGTCCTCTCGGCGCCTCTCAGCCCCGAGCGGGTGGAGGCTCCTGTGACTGTTAAGGCTTATCTCCTTTGTGTCTTTGCCTCTTTCGGTGGTATCTTTTTCGGCTTCGATTCTGGTTACATGAACGGCGTGTTGGGTATGAATTACTTCATCAACATGATGACGGGTCTTCCTATTCCTGGCGCCGATGCGGATCAGGCGACCAAAGATGCCTTCACTCTGCCAGCTTGGGAGAAGTCTTTGATCACTTCCATTCTTTCTGCCGGAACGTTCTTTGGTGCGATCATCGCTGGTGACCTTGCCGACTACTTCGGTCGAAGGATTACTATCGTTTCTGGTTGTTGTGTATTTATCGTTGGTTGCTGTCTGCAGACTGCTTCAACTGGCCTCGGCTTGCTGGTGGCCGGTCGTCTCATCGCTGGGTTTGGTGTCGGTTTCATTTCAGCGATCATCATTCTCTACATGTCGGAGATCGCTCCTCGAAAGGTTCGAGGTGCTATTGTCTCGGGTTACCAGTTTTGCATCACTATTGGTCTTCTTCTTTCCTCTTGTGTATGTTACGCAACTCAGAACCGGACCGATAGCGGGTCATACCGTATCCCCATCGCCATTCAGTTTGCCTGGGCTCTTATCCTCGGTGGTGGTCTCCTTTTGCTTCCAGAGTCTCCTCGTTGGTATGTCAAGGCCGGCAAGATCGAACAGGCAAGAAAGGCACTGTCTCGAGTCCGAGGTCAACCTGTGGACTCTGATTACATCAAGGATGAAATCGCCGAAATTGTGGCCAATCACGAGTACGAGACTGAGCTTACTCCCAATGTGACTTACCTCTCCTCTTGGGCTGCCTGTTTCACTGGTGGTATTCGCAACCCTGGTTCTAACCTTCGTCGAACCCTTCTCGGTATTTCCATGCAAATGATGCAGCAATGGACTGGTGTCAACTTCATCTTCTACTTTGGAACCACCTTCTTCACCGACCTTGGGACTATCTCGAACCCCTTCTTGATTTCTCTCATCACTACTTTAGTCAACGTCTGCTCCACACCTGTGTCCTTCTGGACTATCGAGCGATTTGGTCGACGACCCCTTCTTATCTATGGTGCCCTCGGTATGCTTATCTGCGAGTTCATTGTCGGTATCATCGGTGTCGCCAAGCCTGGAGACACTACAGTCGTTAAGGTGCAGATCTCCTTCATTTGCATTTACGTCTTCTTCTTCGCGTCAACTTGGGGTCCAGGCGCTTGGGTTTCTATTGGTGAAATTTTCCCATTGCCTATCAGAGCGCGAGGTGTTGGTCTCTCCACCGCCTCTAACTGGCTATGGAACTGTATTATCGCCGTCATTACTCCTTATCTTGTTGGAACTGACGAGGCTAACCTCGGTTCAAAAGTCTTTTTCCTTTGGGGTTCAACCTGTATTCTCTGCTTTATCTACGCCTATCTCTTTGTATGGGAGACCAAGGGCCTCACTCTGGAACAGGTTGATAGGATGATGGAAGAATGCGGGAGCCCCAGACGCTCAGCGGGTTGGAAACCCCATACCACGTTTGCAGCTGAAGCTGCCCAGGGTACACATGGGCTTGACCAGAATGAGAAAGCGAAAGTTGGACCTGTGTTATCACAGTCAGAGATGTTGGAGCAAGTTTAA > 397 CNBA0850 Similar_to_gi|2500938|sp|Q10286|ITR1_SCHPO_Myo-inositol_transporter_1,_FASTA_scores:_opt:_1461,_E():_5.3e-83,_(46.545%_identity_(75.610%_similar)_in_492_aa_overlap_(74-560:79-565));_HMMPfam_hit_to_Sugar_tr,_Sugar_(and_other)_transporter,_score:_392.3,_E():_5.7e-115 hypothetical_protein XP_778082.1 NA MSAGPAQPNIYAPIRTSHSGYPSPTHSGSSTPASLEFSDGRLPESNVERDMSKVAERVALLGEVDDGAVIVEGEDKITKFVWTLVLAAAISGLLFGYDTAAISGMLVIIKDDLGTILSSWQKEAITSATTLGALLGGLAAGCISDFTGRRLVIVFANVAFIGGSICQAACHTVAVMIAGRFIVGLGVGLASCIVPLYIGELAPTMIRGRLVTINCVAITLGQVVAYAIGASFQNAHNGWRWIVGLGAMPSFVQLASIGFLPESPRILLLRSDVAGARAITAKIYPLAKVEQVDRKVEIMKAAVDQSIEYNANSTWFERLKSLVMVGTNRRALIIGCGLQAAQQLCGFNTLMYYSATIFAMLGFKNATAVGLIVATVNVLFTLVALKIVDPVGRRRTMLFTLPIMTLALVLAAIFFYYLTLSTNGILIEDHDYPRSLSIPVLLSMLLYVAGYATGLGNIPWQQGELFRLEVRGIGTSICTAVNWSCNMLIASTFLSLMDAATPSGAFGIYAGFCVIGWLFCWMLYPETSGLSLEEVYFVFEEGFGIEKSQQLRKQKLEESAKLKAIFE Tremellomycetidae Cryptococcus_neoformans_var._neoformans_B-3501A Cryptococcus_neoformans_var._neoformans_B-3501A XM_772989 NA Fung,E.,_Hyman,R.W.,_Rowley,D.,_Bruno,D.,_Miranda,M.,_Fukushima,M.,_Wickes,B.L.,_Fu,J._and_Davis,R.W. NA 0:1704 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_009177).COMPLETENESS:_incomplete_on_both_ends. NA 21-MAR-2008 Cryptococcus_neoformans_var._neoformans_B-3501A_hypothetical_protein_(CNBA0850)_partial_mRNA. NA Tremellaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cryptococcus_neoformans_Q5KQ09_CRYNE.gb Filobasidiella 134106142 Unpublished fungi XM_772989 NA NA jelly_fungi basidiomycetes NA 1704 1 mRNA 283643 B-3501A neoformans Filobaxidiella_neoformans NA forward NA NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 283643 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Tremellomycetes,_Tremellales,_Tremellaceae,_Filobasidiella,_Filobasidiella/Cryptococcus_neoformans_species_complex Cryptococcus_neoformans_serotype_D_sequencing Filobasidiella_neoformans_var._neoformans XM_772989.1 ATGTCAGCTGGACCAGCCCAACCCAACATCTACGCACCCATCCGCACATCTCACAGCGGCTATCCATCCCCGACACACTCTGGTTCCTCCACGCCCGCGTCGCTGGAATTCTCCGATGGTCGATTGCCGGAAAGCAATGTCGAGAGAGATATGAGCAAGGTCGCGGAGAGGGTCGCCCTTCTGGGCGAGGTGGATGACGGAGCAGTCATCGTGGAAGGCGAAGATAAAATAACCAAGTTCGTGTGGACGCTGGTGTTGGCTGCTGCGATCTCAGGCTTACTATTCGGCTATGACACGGCCGCCATCTCCGGTATGCTGGTCATTATCAAGGACGATCTTGGCACAATATTATCAAGCTGGCAAAAAGAAGCGATCACCTCTGCCACAACTCTCGGTGCATTATTAGGAGGTCTTGCCGCAGGTTGCATTTCAGACTTTACAGGTCGAAGGCTCGTTATTGTGTTTGCCAACGTCGCTTTTATCGGTGGTTCTATCTGTCAAGCAGCTTGCCACACTGTGGCAGTGATGATCGCCGGTCGATTCATCGTTGGACTTGGTGTCGGTCTCGCGAGCTGTATTGTGCCATTGTATATTGGAGAGCTGGCGCCTACCATGATTAGAGGACGATTGGTTACCATTAACTGTGTCGCTATCACTTTGGGTCAAGTCGTCGCTTACGCTATTGGTGCCAGTTTCCAAAATGCGCATAATGGTTGGCGATGGATTGTGGGACTTGGCGCGATGCCGTCGTTTGTTCAACTCGCTTCAATCGGTTTCCTTCCCGAATCACCCCGTATTCTTCTGCTCCGCTCTGACGTTGCTGGCGCACGAGCTATTACTGCCAAGATCTACCCTCTCGCAAAAGTCGAGCAGGTTGACAGAAAAGTCGAGATCATGAAAGCTGCTGTCGATCAGAGTATCGAGTATAACGCCAATTCTACATGGTTTGAGAGGCTCAAGAGTTTGGTTATGGTTGGTACCAATCGACGAGCGCTAATCATCGGATGTGGATTGCAAGCAGCCCAACAACTATGCGGTTTCAACACTCTGATGTACTATTCTGCAACCATATTCGCCATGCTTGGATTCAAGAATGCTACAGCCGTCGGATTGATCGTCGCTACTGTCAACGTTTTGTTCACCCTCGTCGCTCTCAAGATTGTCGACCCTGTGGGACGACGAAGAACTATGCTTTTCACCCTTCCTATTATGACCCTCGCCCTCGTCCTCGCGGCTATCTTCTTCTACTACCTCACACTCTCCACCAACGGCATCCTCATCGAGGACCACGACTACCCCCGCTCTTTATCCATCCCCGTTCTCCTTTCCATGCTCCTCTATGTCGCGGGCTACGCAACCGGTCTCGGTAACATCCCCTGGCAACAGGGAGAGCTCTTCCGACTCGAAGTAAGAGGAATCGGTACGAGTATCTGTACGGCCGTGAATTGGAGTTGTAATATGTTGATTGCGAGCACGTTTTTGAGTTTGATGGATGCTGCAACGCCAAGTGGGGCGTTTGGGATTTATGCGGGGTTTTGTGTGATTGGATGGTTGTTTTGTTGGATGCTGTATCCTGAGACTTCCGGACTTTCATTGGAAGAAGTATACTTTGTTTTCGAAGAAGGGTTTGGGATTGAAAAATCTCAGCAGCTGCGCAAGCAGAAGCTGGAAGAATCTGCCAAGCTCAAAGCCATATTTGAGTAA > 398 H16_A3076 12_TMHs major_facilitator_superfamily_transporter_MHS_family_protein YP_727519.1 11 MQAVSIDAAAKGASAQKQSVARVAGASLAGTTLEFYDHFIYGSAAALVFPKLFFPQSDPLTATLLSFASYGVAFVARPLGAAIFGHFGDKMGRKSILIITLLMMGLATFGIGLLPTYAAAGALAPVLLVLLRVVQGLALGGEWGGAAIMVNELDPEGKRRGILGSLVQLAAPIGLLLANGVFALVTWQVSEEAFLSWGWRVPFLLSALLVGVGLYIRSNVRESGMFEKLEESHAEARAPIMEVLRNYKKQLLIAFGARLGGDIAFYVFTLFLLYFVPTKLGLPKSIALNAVLLGAVAQILFIPVAGYLADRIGRRPVLMIGGIGGAVWAFVFFTLVKTGSPALIMLASFVGMVLVSFMFSPLASFLPELFATRVRVTGASLGFQFAGVFGGALAPLIAVGLLDRFGSTAPVALYLAAVCALIAIAAAAARETNRMHLSDADR beta_subgroup Ralstonia_eutropha_H16 Ralstonia_eutropha_H16 NC_008313 3328872..3330200 Pohlmann,A.,_Fricke,W.F.,_Reinecke,F.,_Kusian,B.,_Liesegang,H.,_Cramm,R.,_Eitinger,T.,_Ewering,C.,_Potter,M.,_Schwartz,E.,_Strittmatter,A.,_Voss,I.,_Gottschalk,G.,_Steinbuchel,A.,_Friedrich,B._and_Bowien,B. NA 0:1329 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM260479.URL_--_http://www.g2l.bio.uni-goettingen.deContacts:_Heiko_Liesegang_(hlieseg@gwdg.de).COMPLETENESS:_full_length. NA 25-JAN-2012 Ralstonia_eutropha_H16_chromosome_1,_complete_genome. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cupriavidus_necator_Q0K770_CUPNH.gb Wautersia_Vaneechoutte_et_al._2004 113866031 Nat._Biotechnol._24_(10),_1257-1262_(2006) NA NC_008313 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 16964242 1329 1 genomic_DNA NA H16 NA Wautersia_eutropha_(Davis_1969)_Vaneechoutte_et_al._2004 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 381666 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Cupriavidus Genome_sequence_of_the_bioplastic-producing_Knallgas_bacterium_Ralstonia_eutropha_H16 NA NC_008313.1 TCAGCGGTCCGCGTCGGACAGGTGCATGCGATTGGTTTCCCGCGCGGCCGCCGCGGCGATTGCGATCAGCGCGCACACCGCCGCCAGGTACAGCGCAACGGGCGCGGTGCTGCCGAAGCGGTCGAGCAGGCCCACCGCGATCAGCGGGGCCAGCGCGCCGCCGAACACACCGGCGAACTGGAAGCCGAGCGAGGCACCGGTCACGCGCACCCGGGTGGCGAACAGCTCCGGCAGGAACGACGCCAGCGGCGAGAACATGAACGACACCAGCACCATGCCGACGAACGAGGCCAGCATGATCAAAGCCGGGCTGCCGGTCTTGACCAGCGTGAAGAAGACAAAGGCCCACACCGCACCGCCGATGCCGCCGATCATCAGCACCGGGCGACGCCCGATGCGGTCGGCCAGGTAACCGGCCACCGGGATGAACAGGATCTGCGCCACCGCACCCAGCAGCACGGCATTGAGCGCGATGCTCTTGGGCAGGCCCAGCTTGGTCGGCACGAAGTACAGCAGGAACAGCGTGAACACGTAGAAGGCGATATCGCCGCCCAGCCGCGCGCCAAAGGCGATCAGCAGCTGCTTCTTGTAGTTGCGCAGCACTTCCATGATCGGCGCGCGCGCTTCGGCGTGGGATTCCTCCAGCTTCTCGAACATGCCGGACTCACGCACGTTGGAGCGGATGTAGAGCCCAACGCCCACCAGCAGCGCCGACAGCAGGAACGGCACGCGCCAGCCCCAGCTCAGGAAGGCTTCTTCCGAGACCTGCCAGGTCACCAGCGCGAATACGCCGTTGGCAAGCAGCAGGCCGATCGGCGCGGCGAGCTGCACCAGGCTGCCGAGGATGCCGCGCCTTTTCCCTTCAGGGTCGAGCTCGTTGACCATGATCGCCGCCCCGCCCCATTCGCCGCCCAGCGCCAGGCCCTGCACCACGCGCAGCAGCACCAGCAGCACCGGCGCCAGCGCGCCCGCGGCGGCATAGGTCGGCAGCAGGCCGATACCGAAGGTGGCCAGGCCCATCATCAGCAGCGTAATGATCAGGATGGACTTGCGCCCCATCTTGTCGCCGAAGTGGCCGAAGATCGCCGCGCCCAGCGGCCGCGCCACGAAGGCAACGCCGTAGCTGGCAAAGGACAGCAGCGTCGCGGTCAGCGGGTCGCTCTGCGGGAAGAACAGCTTGGGGAAGACCAGCGCGGCGGCCGATCCGTAGATGAAGTGGTCGTAGAACTCGAGCGTGGTGCCGGCGAGGCTGGCCCCCGCGACGCGCGCGACGGACTGCTTCTGGGCCGACGCGCCTTTTGCCGCTGCGTCGATGCTGACTGCTTGCAT > 399 H16_A1698 NA major_facilitator_superfamily_sugar_transporter YP_726191.1 11 MEVLANDKVPTSGAQSAAPVAANNRQVLGAVTASCMGWALDLFDLFILLFVAPVIGKLFFPSEHAMLSLAAVYASFAVTLLMRPLGSAIFGAYADRHGRKGAMVVAVTGVGLSTAAFGLLPTVAQVGLFAPALFILLRLVQGVFVGGVVASTHTIGTESVPPSWRGAVSGLVGGGGAGIGALLASITYMAMTALFPGDAFEVWGWRCMFFAGIVSSVLGLVIFNSLEESPLWKQLQAAKAASGHAKPQAHPLRTLFSREYRGILLVNILLTVGAGSAYYLTSGYLPTFLKVVVKASPGESSAILMLSSLGVIVASVAAGHFSTLVGRKRAFLLIGALSLVLMPLLYQWMPAAPTATLRGVYAVALSMLGCAGFAPILIFLNERFPTSIRASGTGLSWNIGFAIGGMMPTLASLAAGTPADLPVILGVFLAAVTLVYLVGATIVPETLGRLVEK beta_subgroup Ralstonia_eutropha_H16 Ralstonia_eutropha_H16 NC_008313 1854002..1855363 Pohlmann,A.,_Fricke,W.F.,_Reinecke,F.,_Kusian,B.,_Liesegang,H.,_Cramm,R.,_Eitinger,T.,_Ewering,C.,_Potter,M.,_Schwartz,E.,_Strittmatter,A.,_Voss,I.,_Gottschalk,G.,_Steinbuchel,A.,_Friedrich,B._and_Bowien,B. NA 0:1362 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM260479.URL_--_http://www.g2l.bio.uni-goettingen.deContacts:_Heiko_Liesegang_(hlieseg@gwdg.de).COMPLETENESS:_full_length. NA 25-JAN-2012 Ralstonia_eutropha_H16_chromosome_1,_complete_genome. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cupriavidus_necator_Q0KAZ8_CUPNH.gb Wautersia_Vaneechoutte_et_al._2004 113866031 Nat._Biotechnol._24_(10),_1257-1262_(2006) NA NC_008313 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 16964242 1362 1 genomic_DNA NA H16 NA Wautersia_eutropha_(Davis_1969)_Vaneechoutte_et_al._2004 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 381666 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Cupriavidus Genome_sequence_of_the_bioplastic-producing_Knallgas_bacterium_Ralstonia_eutropha_H16 NA NC_008313.1 CTACTTTTCTACAAGACGGCCCAGCGTCTCCGGCACGATCGTAGCGCCCACCAGATAGACCAGCGTGACGGCCGCGAGGAATACACCAAGGATCACCGGCAGGTCGGCGGGCGTGCCGGCGGCGAGCGAGGCCAGCGTCGGCATCATCCCGCCGATGGCGAAGCCGATGTTCCACGACAAGCCCGTGCCGGAGGCGCGGATGCTGGTGGGAAACCGCTCGTTCAGGAAGATGAGGATCGGCGCGAAGCCGGCGCACCCGAGCATGCTGAGCGCCACCGCGTAGACGCCGCGCAAGGTGGCGGTTGGCGCGGCCGGCATCCACTGGTAGAGCAGGGGCATCAGCACCAGGCTGAGGGCGCCGATCAGCAGGAAGGCGCGCTTGCGCCCGACCAGCGTGCTGAAATGCCCCGCTGCCACCGATGCGACGATCACACCGAGGCTGCTCAGCATCAGGATGGCCGAGGACTCGCCGGGGGATGCCTTGACCACGACCTTCAGAAAAGTGGGAAGGTAGCCGGAAGTCAGGTAGTAGGCGCTGCCCGCGCCCACGGTCAGCAGGATGTTGACCAGCAGGATGCCACGATACTCGCGCGAGAACAGCGTGCGCAGCGGATGCGCTTGCGGCTTGGCGTGGCCGCTGGCGGCCTTTGCCGCCTGCAGCTGCTTCCACAGCGGCGACTCCTCCAGCGAGTTGAAGATGACCAGCCCCAGCACCGAGCTGACGATGCCGGCAAAGAACATGCAGCGCCATCCCCAGACCTCGAAGGCGTCGCCGGGAAACAGCGCCGTCATTGCCATGTAAGTGATCGACGCCAGCAGCGCGCCGATGCCCGCGCCGCCGCCGCCCACCAGGCCGGAAACCGCGCCGCGCCACGACGGCGGCACCGATTCCGTGCCTATGGTATGCGTCGAAGCGACCACGCCGCCGACGAACACGCCCTGCACCAGCCGCAGCAGGATGAACAGCGCCGGCGCGAAGAGGCCGACCTGGGCGACCGTCGGCAGCAGCCCGAACGCCGCAGTCGACAGGCCGACGCCGGTGACGGCCACCACCATGGCACCCTTGCGCCCGTGCCGGTCCGCGTACGCGCCGAAGATGGCCGAGCCGAGCGGGCGCATCAGCAGCGTCACCGCGAATGACGCGTACACGGCCGCCAGCGACAGCATCGCGTGCTCGGACGGAAAGAACAGCTTGCCGATCACCGGCGCCACGAACAGCAGGATAAACAGGTCGAACAGGTCGAGCGCCCATCCCATGCACGAAGCCGTCACCGCGCCCAGCACCTGCCGGTTGTTCGCGGCCACGGGCGCCGCGCTCTGCGCGCCGCTGGTCGGCACCTTGTCATTTGCCAGCACTTCCAT > 400 H16_A0540 11_TMHs MFS_family_transporter YP_725057.1 11 MANVQNVAVPAGGAQNAPMTAEERKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGLDPTSAFIFALLAFAAGFIVRPFGALVFGRLGDMIGRKYTFLVTILLMGLSTFIVGLLPGYATIGWAAPIILIALRMLQGLALGGEYGGAATYVAEHAPHGKRGAYTSWIQTTATLGLFLSLIVILLCREMTGPNFETWGWRIPFLVSILLLGVSVYIRLSMNESPAFQRMKAEGKTSKAPLTESFGQWRNLKIVILALLGLTAGQAVVWYTGQFYALFFLTQVLKVDAKTANLLIAGALVLGTPFFIFFGSLSDKIGRKWIIMAGCALAVLTYFPLFKAMTHYANPALERAQKSAQIVVTADPKQCSFQGSPIAREIDFRSSCDIAKRTLAQASASYEVVEAPAGTVATVKIGDKEIKAFDAQLVNGHSFDEPSKKQIAAFKKEVGESMASAGYPTKADPAQMNTIMVLVILVILVIYVTMVYGPIAAMLVELFPTRIRYTSMSLPYHIGNGWFGGLLPTISFALVAQNGNIYYGLWYPIIIAAITFVIGALFIRETKDVNIYAND beta_subgroup Ralstonia_eutropha_H16 Ralstonia_eutropha_H16 NC_008313 566679..568376 Pohlmann,A.,_Fricke,W.F.,_Reinecke,F.,_Kusian,B.,_Liesegang,H.,_Cramm,R.,_Eitinger,T.,_Ewering,C.,_Potter,M.,_Schwartz,E.,_Strittmatter,A.,_Voss,I.,_Gottschalk,G.,_Steinbuchel,A.,_Friedrich,B._and_Bowien,B. NA 0:1698 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM260479.URL_--_http://www.g2l.bio.uni-goettingen.deContacts:_Heiko_Liesegang_(hlieseg@gwdg.de).COMPLETENESS:_full_length. NA 25-JAN-2012 Ralstonia_eutropha_H16_chromosome_1,_complete_genome. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cupriavidus_necator_Q0KE82_CUPNH.gb Wautersia_Vaneechoutte_et_al._2004 113866031 Nat._Biotechnol._24_(10),_1257-1262_(2006) NA NC_008313 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 16964242 1698 1 genomic_DNA NA H16 NA Wautersia_eutropha_(Davis_1969)_Vaneechoutte_et_al._2004 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 381666 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Cupriavidus Genome_sequence_of_the_bioplastic-producing_Knallgas_bacterium_Ralstonia_eutropha_H16 NA NC_008313.1 TCAATCGTTGGCGTAGATGTTCACGTCCTTGGTCTCGCGGATGAACAGCGCGCCGATCACGAAGGTGATGGCTGCGATGATGATCGGGTACCAGAGACCGTAGTAGATGTTGCCGTTCTGGGCCACCAGCGCAAACGAGATGGTGGGCAGCAGGCCGCCGAACCAGCCGTTGCCGATATGGTAGGGCAGCGACATCGAGGTGTAGCGGATGCGGGTCGGGAACAGCTCCACCAGCATGGCGGCGATCGGGCCGTACACCATGGTGACGTAGATCACCAGGATGACCAGGATCACCAGCACCATGATCGTGTTCATCTGTGCCGGGTCGGCCTTGGTCGGGTAGCCGGCGGAGGCCATCGATTCACCAACCTCCTTCTTGAACGCCGCGATCTGCTTCTTGCTGGGCTCGTCGAAGCTGTGGCCGTTCACCAGCTGCGCGTCGAAGGCCTTGATCTCCTTGTCGCCGATCTTGACCGTGGCCACGGTGCCGGCCGGGGCCTCGACCACTTCATAGCTGGCCGATGCCTGGGCCAGCGTGCGCTTGGCAATGTCGCAGGAGCTGCGGAAGTCGATCTCGCGGGCGATCGGGCTGCCCTGGAACGAGCACTGCTTCGGGTCGGCGGTGACCACGATCTGGGCGCTCTTCTGGGCGCGCTCCAGAGCCGGGTTGGCGTAGTGGGTCATGGCCTTGAACAGCGGGAAGTAGGTCAGCACGGCCAGCGCGCAGCCCGCCATGATGATCCACTTGCGGCCGATCTTGTCCGACAGCGAGCCGAAGAAGATGAAGAACGGCGTGCCGAGCACCAGTGCGCCGGCGATCAGCAGGTTGGCCGTCTTGGCATCGACCTTGAGCACCTGGGTCAGGAAGAACAGCGCATAGAACTGGCCGGTGTACCAGACCACGGCCTGGCCGGCGGTCAGGCCGAGCAGGGCCAGGATCACGATCTTCAGGTTGCGCCACTGGCCGAAGGACTCGGTCAGCGGGGCCTTGGAGGTCTTGCCCTCTGCCTTCATGCGCTGGAACGCCGGCGATTCATTCATCGACAGGCGGATATATACCGACACGCCCAGCAGCAGGATCGACACCAGGAACGGGATGCGCCAGCCCCAGGTCTCGAAGTTGGGCCCGGTCATTTCGCGGCACAGCAGGATCACGATCAGCGACAGGAACAGGCCCAGCGTGGCCGTGGTCTGGATCCACGAGGTATAGGCGCCGCGCTTGCCGTGCGGTGCGTGCTCGGCCACGTAGGTGGCGGCACCGCCGTACTCGCCGCCGAGCGCCAGGCCTTGCAGCATGCGCAGTGCGATCAGGATGATCGGCGCGGCCCAGCCGATGGTGGCATAGCCCGGCAGCAGGCCGACGATGAAGGTCGACAGGCCCATGAGCAGGATCGTCACCAGGAAGGTGTACTTGCGCCCGATCATGTCGCCCAGGCGGCCGAACACCAGCGCGCCGAACGGCCGCACGATAAAGCCGGCGGCGAATGCGAGCAGCGCGAAGATGAAGGCCGAGGTGGGATCCAGTCCGGCGAAGAACTGCTTGGCAATGATTGCCGCCAGCGAGCCGTAGAGATAAAAGTCGTACCACTCGAACACCGTGCCCAGCGATGAGGCAAAGATCACCTTGCGCTCTTCGGCTGTCATCGGTGCGTTCTGCGCGCCCCCTGCGGGCACCGCAACGTTTTGCACGTTTGCCAT > 401 Reut_B4845 NA major_facilitator_transporter YP_299037.1 11 MVLALGIAWVLDGLEVTLVGSVGAVLERRDTLALTATEVGWTGSFYVGGAVLGALLFGRMADRLGRKRLFLVTLLVYMAATLATAFSTGFAMFAVCRFFTGLGIGGEYAAINSAIDELIPARVRGRVNLAINGSFWVGAALGAGLSLLLLDPRVLGPVWGWRACFALGAVLAVAIMLVRRHVPESPRWLAMHGRIGEAEHVIADIEAQVFPTVRMRAGSPAAASHIHVPTPPPSIRDVLRLLVLRYRQRSLITLALMLAQAFFYNAIFFSYALVLTRFYGVPDGRVALYLFPFALGNAVGPLVLGPLFDEVGRRRMIAATYVLSGLGLAATGWAFTQGWLDAATQALCWSAVFFLASAAASSAYLTASEVFPLEMRALAISVFYAVGTGTGGFIAPVLLGTLIERGSREAVAAGYGLGAALVIAAGLLALRYGIDAERRPLEEIAPPLASGRHEETG beta_subgroup Ralstonia_eutropha_JMP134 Ralstonia_eutropha_JMP134 NC_007348 1553634..1555007 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Goltsman,E.,_Martinez,M.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Lykidis,A._and_Richardson,P. NA 0:1374 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000091.URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Bernardo_Gonzalez(bgonzale@genes.bio.puc.cl)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-PGFQuality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFContacts:_Paul_Richardson_(microbes@cuba.jgi-psf.org)Finished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.COMPLETENESS:_full_length. NA 21-JAN-2012 Ralstonia_eutropha_JMP134_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cupriavidus_pinatubonensis_Q46RP1_CUPPJ.gb Wautersia_Vaneechoutte_et_al._2004 73537298 Unpublished NA NC_007348 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1374 2 genomic_DNA NA JMP134 NA Ralstonia_sp._1278a NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 264198 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Cupriavidus Complete_sequence_of_chromosome_2_of_Ralstonia_eutropha_JMP134 NA NC_007348.1 GTGGTGCTCGCGCTGGGCATCGCCTGGGTGCTCGACGGCCTCGAGGTCACGCTGGTCGGCTCGGTCGGCGCCGTGCTGGAGCGCCGCGACACGCTGGCGCTTACCGCGACCGAGGTCGGCTGGACGGGTTCGTTTTATGTTGGCGGCGCCGTGCTCGGCGCGCTGTTGTTCGGCCGCATGGCCGACCGGCTCGGCCGCAAGCGGCTGTTCCTTGTCACGCTGCTGGTCTACATGGCCGCCACGCTAGCGACGGCGTTTTCAACAGGCTTCGCCATGTTCGCGGTGTGCCGGTTCTTTACCGGCCTTGGCATTGGCGGCGAATATGCCGCCATCAATTCCGCCATCGACGAACTCATTCCCGCGCGTGTGCGCGGCCGCGTGAACCTGGCGATCAACGGCAGCTTCTGGGTCGGCGCCGCGCTCGGAGCCGGGCTGAGCCTGCTGCTGCTCGACCCGCGCGTGCTGGGTCCCGTGTGGGGCTGGCGCGCATGTTTCGCACTGGGCGCGGTGCTGGCCGTTGCCATCATGCTGGTGCGCCGGCATGTGCCGGAAAGCCCGCGCTGGCTGGCCATGCACGGCCGCATCGGCGAAGCGGAACACGTGATTGCGGACATCGAGGCGCAGGTCTTCCCCACAGTGCGGATGCGCGCGGGCTCGCCGGCCGCAGCATCGCACATTCACGTCCCGACGCCACCGCCGTCCATACGCGATGTGCTGCGCCTGCTGGTGCTGCGCTATCGGCAGCGCAGCCTGATTACGCTGGCCCTCATGCTGGCGCAGGCCTTCTTCTACAACGCGATCTTTTTCTCCTACGCACTCGTGCTGACACGCTTCTACGGCGTGCCGGATGGCCGTGTCGCGCTTTACCTGTTCCCGTTCGCGCTGGGCAATGCAGTGGGGCCGCTGGTCCTCGGCCCTTTGTTCGACGAGGTCGGCCGGCGCCGCATGATTGCGGCCACTTACGTGCTGTCTGGCCTCGGCCTGGCCGCCACCGGGTGGGCGTTCACGCAAGGCTGGCTCGACGCTGCCACGCAGGCGCTGTGCTGGTCCGCCGTGTTCTTCCTGGCTTCGGCCGCCGCCAGCTCGGCGTACCTGACCGCCAGCGAGGTCTTTCCTCTCGAAATGCGCGCGCTTGCGATCTCGGTCTTCTATGCGGTGGGCACCGGCACCGGCGGCTTCATCGCACCCGTGCTGCTTGGCACTTTGATCGAACGCGGCAGCCGTGAAGCGGTCGCGGCCGGCTACGGGCTCGGCGCCGCACTGGTCATTGCGGCCGGCCTGCTGGCATTGCGCTACGGGATCGATGCCGAGCGGCGCCCGCTCGAGGAGATTGCCCCGCCATTGGCAAGCGGCCGACACGAAGAAACTGGTTGA > 402 Reut_B3784 NA major_facilitator_transporter YP_297986.1 11 MTMSLTRDEARASASGMTAEERKVILASSFGALMEWYDFYIYAALAVYFGALFFPKGNETAAFLASLATFGAGFLIRPVGALLFGRLGDLIGRKYTFLVTILLMGIATVGVGVLPTYEQIGIAATVLLVLLRLLQGLALGGEVGGAVTYVAEHSPVSKRGLYTSSLQTTATLGLLSSLFVVYLLKTFLTEAEFRAWGWRIPFIVSLVMLVISVYIRGKLHESPVFARMKAGNATSKAPIRESFTQWHNLKFVLLLFVVAAGLGAIFGTGHFYTMFFVNKTLHVPIETVHMLIAIALVVATPCYLFFGWLSDRIGRKYIMMVACLLAALTIQPIFQGLTHYANPALEHFQKQGSVQVTAGNCKARLFGDPVSDCDKIRGYLTDLGVSYTFVPASDAKAEIRIGAQALQGFDRDAIKQALVAAGWPERADPAHINMPMLFLLLLVPILYLAMVYGPMAAFMVELFPARVRYTSLSLPFHLGAGWVGGMLSFVVTAMNVSSGDVYYGLWYPVIIAGAAFVIGMLFVPETRGRDLST beta_subgroup Ralstonia_eutropha_JMP134 Ralstonia_eutropha_JMP134 NC_007348 385027..386628 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Goltsman,E.,_Martinez,M.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Lykidis,A._and_Richardson,P. NA 0:1602 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000091.URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Bernardo_Gonzalez(bgonzale@genes.bio.puc.cl)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-PGFQuality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFContacts:_Paul_Richardson_(microbes@cuba.jgi-psf.org)Finished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.COMPLETENESS:_full_length. NA 21-JAN-2012 Ralstonia_eutropha_JMP134_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cupriavidus_pinatubonensis_Q46UP2_CUPPJ.gb Wautersia_Vaneechoutte_et_al._2004 73537298 Unpublished NA NC_007348 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1602 2 genomic_DNA NA JMP134 NA Ralstonia_sp._1278a NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 264198 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Cupriavidus Complete_sequence_of_chromosome_2_of_Ralstonia_eutropha_JMP134 NA NC_007348.1 TCAGGTGGACAGGTCGCGACCGCGCGTCTCCGGCACGAACAGCATGCCGATCACGAATGCAGCGCCCGCGATGATCACCGGATACCAAAGCCCGTAGTAGACGTCGCCGCTCGATACATTCATCGCCGTGACGACGAAGGACAGCATGCCGCCGACCCAGCCCGCACCCAGGTGGAAGGGCAGGGACAGCGAGGTGTAGCGCACGCGTGCCGGGAACAGTTCGACCATGAACGCGGCCATCGGCCCGTACACCATGGCGAGGTACAGGATGGGCACGAGCAGCAGCAGGAACAGCATCGGCATATTGATGTGCGCCGGATCGGCGCGCTCGGGCCAGCCGGCTGCGACGAGCGCTTGCTTGATTGCGTCGCGGTCAAAGCCCTGCAGCGCTTGCGCGCCGATGCGGATTTCGGCCTTCGCATCGCTGGCGGGCACGAAGGTGTAGCTCACGCCAAGGTCGGTCAGGTAGCCGCGGATCTTGTCGCAGTCGGACACCGGATCACCGAACAGACGCGCTTTGCAGTTGCCTGCAGTGACCTGCACGCTTCCCTGCTTCTGGAAGTGTTCGAGCGCCGGATTGGCGTAGTGCGTCAGGCCCTGGAAGATGGGCTGAATCGTGAGCGCCGCCAGCAAGCAGGCCACCATCATGATGTACTTGCGGCCGATGCGATCCGACAGCCAGCCGAAGAACAGGTAACAAGGCGTGGCTACAACCAGTGCGATGGCGATCAGCATGTGCACCGTCTCGATCGGCACATGCAGCGTCTTGTTCACGAAGAACATCGTGTAGAAGTGGCCCGTGCCGAAAATCGCACCAAGGCCGGCTGCCACCACGAACAGCAGCAGCACGAACTTGAGGTTGTGCCATTGCGTGAAGCTCTCGCGGATCGGCGCCTTCGATGTCGCGTTGCCGGCCTTCATGCGCGCAAACACTGGCGATTCGTGCAGCTTGCCGCGGATGTACACCGATATCACCAGCATCACCAGCGACACGATGAACGGAATGCGCCAGCCCCAGGCACGGAATTCCGCCTCGGTCAGGAACGTCTTGAGCAGATACACCACGAACAGCGACGACAGCAGGCCCAGGGTCGCCGTGGTCTGCAGCGAACTTGTGTACAGGCCGCGCTTGCTCACCGGCGAATGCTCGGCCACGTAGGTGACCGCGCCGCCCACCTCGCCGCCGAGCGCGAGGCCCTGCAACAACCGCAGCAGCACCAGCAGCACGGTGGCTGCGATGCCGATCTGCTCGTAGGTGGGCAGGACGCCAACGCCGACCGTGGCAATGCCCATCAGCAGGATGGTGACGAGAAAGGTGTACTTGCGGCCGATTAGGTCGCCCAGACGACCGAACAGCAGTGCGCCAACGGGGCGGATCAGGAAGCCGGCGCCGAACGTCGCGAGGCTGGCGAGGAAGGCGGCGGTTTCATTGCCCTTCGGGAAGAACAGGGCGCCGAAGTAAACCGCCAGCGCAGCGTAGATGTAAAAGTCGTACCACTCCATCAGCGCACCGAAGGAGGAGGCAAGGATGACCTTGCGTTCTTCGGCGGTCATGCCGGAAGCGGAGGCGCGCGCTTCATCGCGGGTCAGGCTCATAGTCAT > 403 Reut_A0523 NA major_facilitator_transporter YP_294749.1 11 MANTQNVAMPGGGAQNAPMTTEEKKVILASSLGTVFEWYDFYLYGSLAAVIAKQFFAGLDPTSAFIFALLAFAAGFIVRPFGALVFGRLGDMIGRKYTFLVTILIMGLSTFIVGLLPGYATIGWAAPIILIALRMLQGLALGGEYGGAATYVAEHAPHGKRGSYTAWIQTTATLGLFLSLIVILLCRELTGANFEAWGWRIPFLVSILLLAMSVYIRLSMSESPAFQRMKAEGKTSKAPLTEAFGQWRNLKIVIVALVGLTAGQAVVWYTGQFYSLFFLTQVLKVDAKTANLLIAGALVIGTPFFLFFGSLSDKIGRKWIIMLGCALAVLTYFPLFKALTHYANPALERAQQTAQIVVTADPKQCSFQGSPIAREIDFRSSCDIVKRTLAQASASYEVVQAPAGTVASVKIGDKEIKAFDATVTGGHSFDDASKKQIAAFKKEVGESMAAAGYPTKADPAQMNTIMVLVVLVILVIYVTMVYGPIAAMLVEMFPTRIRYSSMSLPYHIGNGWFGGLLPTISFALVAQNGNIYYGLWYPIIIAAVTFVVGALFVRETKDVDIYAHD beta_subgroup Ralstonia_eutropha_JMP134 Ralstonia_eutropha_JMP134 NC_007347 568706..570403 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Goltsman,E.,_Martinez,M.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Lykidis,A._and_Richardson,P. NA 0:1698 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000090.URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Bernardo_Gonzalez(bgonzale@genes.bio.puc.cl)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-PGFQuality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFContacts:_Paul_Richardson_(microbes@cuba.jgi-psf.org)Finished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.COMPLETENESS:_full_length. NA 21-JAN-2012 Ralstonia_eutropha_JMP134_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cupriavidus_pinatubonensis_Q475M8_CUPPJ.gb Wautersia_Vaneechoutte_et_al._2004 73539706 Unpublished NA NC_007347 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1698 1 genomic_DNA NA JMP134 NA Ralstonia_sp._1278a NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 264198 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Cupriavidus Complete_sequence_of_Chromosome1_of_Ralstonia_eutropha_JMP134 NA NC_007347.1 TCAGTCGTGGGCGTAGATGTCCACGTCCTTGGTTTCACGCACGAACAGGGCACCGACCACGAAGGTGACGGCGGCGATGATGATCGGGTACCAGAGGCCGTAGTAGATGTTGCCGTTCTGGGCGACCAGCGCGAACGAGATGGTAGGCAGCAGCCCGCCGAACCAGCCGTTGCCGATATGGTAGGGCAGCGACATCGACGAGTAGCGGATACGCGTCGGGAACATTTCCACCAGCATGGCGGCGATCGGCCCGTACACCATCGTCACATAGATCACCAGAATCACCAGGACCACCAGCACCATGATGGTGTTCATCTGCGCCGGATCAGCCTTGGTCGGGTAGCCTGCCGCGGCCATGGACTCGCCGACCTCCTTCTTGAACGCGGCGATCTGCTTCTTGCTGGCATCGTCGAAGCTGTGGCCGCCCGTGACGGTAGCGTCGAACGCCTTGATCTCCTTGTCGCCGATCTTCACCGAAGCGACCGTGCCGGCCGGAGCCTGCACCACTTCATAGCTTGCCGATGCCTGGGCCAGCGTACGCTTGACGATATCGCAGGAGCTGCGGAAGTCGATTTCACGTGCGATCGGGCTGCCCTGGAACGAGCACTGCTTCGGGTCGGCGGTGACAACGATCTGCGCGGTTTGCTGCGCACGCTCGAGCGCCGGGTTTGCATAGTGCGTCAGGGCCTTGAACAGCGGGAAGTAGGTCAGCACGGCGAGCGCGCAGCCCAGCATGATGATCCACTTGCGGCCGATCTTGTCCGACAGCGAGCCGAAGAACAGGAAGAACGGTGTGCCGATCACCAGCGCGCCGGCGATCAGCAGGTTGGCCGTCTTGGCATCGACCTTGAGCACCTGCGTCAGGAAGAACAGCGAGTAGAACTGGCCGGTGTACCAGACCACGGCCTGGCCGGCGGTCAGGCCCACCAGCGCCACGATCACGATCTTCAGGTTGCGCCACTGGCCGAACGCTTCGGTCAGCGGAGCCTTCGAGGTCTTGCCCTCGGCCTTCATGCGCTGGAACGCCGGCGACTCGCTCATCGACAGGCGGATGTACACCGACATGGCCAGCAGCAGGATCGAGACCAGGAACGGAATACGCCAGCCCCAGGCTTCGAAGTTGGCACCGGTCAGCTCGCGGCACAGCAGGATCACGATCAGCGACAGGAACAGGCCCAGCGTCGCGGTGGTCTGGATCCAGGCCGTGTAGGAACCGCGTTTGCCGTGCGGCGCATGCTCGGCCACGTACGTGGCGGCACCGCCGTACTCGCCGCCGAGCGCGAGGCCCTGCAGCATGCGCAGCGCGATCAGGATGATCGGGGCGGCCCAGCCGATGGTGGCGTAGCCCGGGAGCAGCCCGACGATGAACGTCGACAGGCCCATGATCAGGATCGTCACCAGGAAGGTGTACTTGCGGCCGATCATGTCGCCGAGGCGGCCGAACACCAGCGCGCCGAACGGGCGCACGATGAAGCCTGCCGCGAATGCCAGCAGGGCGAAGATGAACGCAGAGGTCGGGTCCAGGCCGGCGAAGAACTGCTTGGCGATCACTGCCGCCAGCGAGCCGTACAGGTAAAAGTCATACCACTCGAACACCGTGCCGAGCGACGAGGCCAGAATGACCTTCTTCTCCTCGGTTGTCATCGGTGCGTTCTGCGCGCCTCCGCCGGGCATCGCTACGTTTTGCGTGTTTGCCAT > 404 RALTA_A0495 Evidence_3_:_Function_proposed_based_on_presence_of_conserved_amino_acid_motif,_structural_feature_or_limited_homology;_Product_type_pt_:_transporter transporter_msf_family YP_001795883.1 11 MANVQNVAVPGGGAQNAPMTAEERKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGLDPTSAFIFALLAFAAGFIVRPFGALVFGRLGDMIGRKYTFLVTILIMGVSTFIVGLLPGYATIGWAAPIILIALRMLQGLALGGEYGGAATYVAEHAPHGKRGAYTSWIQTTATLGLFLSLIVILLCREATGPNFETWGWRIPFLVSILLLGVSVYIRLSMNESPAFQRMKAEGKTSKAPLTESFGQWRNLKIVILALLGLTAGQAVVWYTGQFYALFFLTQVLKVDAKTANLLIAGALVIGTPFFIFFGALSDKIGRKWIIMAGCALAVLTYFPLFKALTHYANPALERAQHSAQIVVTADPKQCSFQGSPIAREIDFRSSCDIVKRTLAQASASYEVVEAPAGTVASVKIGDKEIKAFDAKLVNGHSFDDASKQQIAAFKKEVGSSMAAAGYPTKADPAQMNTIMVLVILVILVIYVTMVYGPIAAMLVELFPTRIRYTSMSLPYHIGNGWFGGLLPTISFALVAQNGNIYYGLWYPIIIAALTFVIGALFIRETKDVNIYAND beta_subgroup Cupriavidus_taiwanensis_LMG_19424 Cupriavidus_taiwanensis_LMG_19424 NC_010528 506126..507823 Amadou,C.,_Pascal,G.,_Mangenot,S.,_Glew,M.,_Bontemps,C.,_Capela,D.,_Carrere,S.,_Cruveiller,S.,_Dossat,C.,_Lajus,A.,_Marchetti,M.,_Poinsot,V.,_Rouy,Z.,_Servin,B.,_Saad,M.,_Schenowitz,C.,_Barbe,V.,_Batut,J.,_Medigue,C._and_Masson-Boivin,C. NA 0:1698 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU633749.Annotation_data_relative_to_BLAST_similarities,_COG_assignations,enzymatic_function_prediction_(PRIAM_software),_TMHMM_and_SignalPpredictions,_and_synteny_results_(Syntonizer_software)_areavailable_in_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage.COMPLETENESS:_full_length. NA 09-SEP-2011 Cupriavidus_taiwanensis_LMG_19424_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cupriavidus_taiwanensis_B2AHB4_CUPTR.gb Wautersia_Vaneechoutte_et_al._2004 188590795 Genome_Res._18_(9),_1472-1483_(2008) NA NC_010528 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 18490699 1698 1 genomic_DNA NA LMG_19424 NA Wautersia_taiwanensis_(Chen_et_al._2001)_Vaneechoutte_et_al._2004 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 977880 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Cupriavidus Genome_sequence_of_the_beta-rhizobium_Cupriavidus_taiwanensis_and_comparative_genomics_of_rhizobia NA NC_010528.1 TCAGTCGTTGGCGTAGATGTTCACGTCCTTGGTCTCGCGGATAAACAGTGCGCCGATCACGAAGGTGAGCGCGGCGATGATGATCGGGTACCAGAGGCCGTAGTAGATGTTGCCGTTCTGGGCCACCAGCGCGAACGAGATGGTGGGCAGCAGGCCGCCGAACCAGCCGTTGCCGATATGGTAGGGCAGCGACATCGAGGTGTAGCGGATGCGGGTCGGGAACAGTTCCACCAGCATGGCGGCGATCGGGCCGTACACCATGGTGACGTAGATCACCAGGATAACCAGGATCACCAGCACCATGATCGTGTTCATCTGCGCCGGGTCAGCCTTGGTCGGGTAACCGGCCGCGGCCATCGAGCTGCCCACTTCCTTCTTGAACGCCGCGATCTGCTGCTTGCTGGCGTCGTCGAAGCTGTGGCCATTTACCAGCTTGGCATCGAAGGCCTTGATCTCCTTGTCGCCGATCTTGACGCTGGCCACGGTGCCGGCCGGGGCCTCGACCACTTCATAGCTGGCCGAAGCCTGCGCCAGGGTACGCTTGACGATGTCGCAGGAGCTGCGGAAGTCGATCTCGCGGGCGATCGGGCTGCCCTGGAACGAGCACTGCTTCGGATCCGCGGTCACCACGATCTGGGCGCTGTGCTGGGCGCGCTCCAGCGCCGGGTTGGCGTAGTGGGTCAGGGCCTTGAACAGCGGGAAGTAGGTCAGCACGGCCAGCGCGCAGCCCGCCATGATGATCCACTTGCGGCCGATCTTGTCCGACAGCGCGCCGAAGAAGATGAAGAACGGCGTGCCGATCACCAGTGCGCCGGCGATCAGCAGGTTGGCCGTCTTGGCATCGACCTTCAGCACCTGGGTCAGGAAGAACAGTGCGTAGAACTGGCCGGTGTACCAGACCACGGCCTGGCCGGCGGTCAGGCCCAGCAGCGCCAGGATCACGATCTTCAGGTTGCGCCATTGGCCGAACGATTCGGTCAGCGGTGCCTTGGAGGTCTTGCCCTCGGCCTTCATGCGCTGGAACGCCGGCGATTCGTTCATCGACAGCCGGATATACACCGACACGCCAAGCAGCAGGATGGACACCAGGAACGGGATGCGCCAGCCCCAGGTCTCGAAGTTCGGGCCAGTCGCCTCGCGGCACAGCAGGATCACGATCAGCGACAGGAACAGGCCGAGCGTGGCGGTGGTCTGGATCCACGAGGTGTACGCACCGCGCTTGCCGTGCGGGGCGTGTTCGGCCACGTAGGTGGCGGCGCCGCCGTACTCGCCGCCGAGCGCCAGGCCCTGCAGCATGCGCAGCGCGATCAGGATGATCGGCGCGGCCCAGCCGATGGTGGCGTAGCCGGGCAGCAGGCCGACGATGAAGGTCGACACGCCCATGATCAGGATCGTCACCAGGAAGGTGTATTTGCGCCCGATCATGTCGCCCAGGCGGCCGAACACCAGCGCGCCGAACGGCCGCACGATAAAGCCGGCGGCAAACGCGAGCAGCGCGAAGATGAAGGCCGAGGTCGGATCCAGCCCGGCAAAGAACTGCTTGGCGATGATTGCCGCCAGCGAGCCATACAGGTAAAAGTCGTACCATTCGAACACCGTGCCCAGCGACGAGGCAAAGATCACCTTGCGCTCTTCGGCAGTCATCGGTGCGTTCTGCGCGCCCCCTCCGGGCACCGCAACGTTTTGCACGTTTGCCAT > 405 RALTA_B0576 Evidence_3_:_Function_proposed_based_on_presence_of_conserved_amino_acid_motif,_structural_feature_or_limited_homology;_Product_type_t_:_transporter mfs_transporter_metabolite_transporter YP_002007257.1 11 MAATAGIVTTADSAGQGATAAARGGPVTRGNIVARIERMPGNAMHVRARLLIGLATFFDGFDVIAIAATLPLLIAQWSLTPGQIGFLIAAPSVGQLVGALLFPGLAERFGRLRSIGWSAGIIGLMSLACGFAPSFEIFALLRIVQGLGLGGELPVAATYINEVTRAHGRGRFVLLYEVVFPIGLMVSNGIGAWLVPHYGWEVMYFIGGVPLVLFFILRRLIPESPRWLAEKGRLEEADAALRAFEARARTPLPPPADASAYERMGQHPRRRVRDLVSKAYLGRTLAVWMLWATCGFIQYGLSTWLPTVYKTVYHAPLQLALNLAAAASVLGVVGSLVCAMIVDKVGRKPVINVSFLLCALSLVLAGVFHAASVYVVATFCALAMGFLASGFITAYVYTPELYPTSVRAMGCGLGGAWLKLAAIFAPGLMASTIGSGDLSFAFFALSVVPALAAVTVHCLGIETKGRVLEELEV beta_subgroup Cupriavidus_taiwanensis_LMG_19424 Cupriavidus_taiwanensis_LMG_19424 NC_010530 625359..626780 Amadou,C.,_Pascal,G.,_Mangenot,S.,_Glew,M.,_Bontemps,C.,_Capela,D.,_Carrere,S.,_Cruveiller,S.,_Dossat,C.,_Lajus,A.,_Marchetti,M.,_Poinsot,V.,_Rouy,Z.,_Servin,B.,_Saad,M.,_Schenowitz,C.,_Barbe,V.,_Batut,J.,_Medigue,C._and_Masson-Boivin,C. NA 0:1422 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU633750.Annotation_data_relative_to_BLAST_similarities,_COG_assignations,enzymatic_function_prediction_(PRIAM_software),_TMHMM_and_SignalPpredictions,_and_synteny_results_(Syntonizer_software)_areavailable_in_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage.COMPLETENESS:_full_length. NA 26-JAN-2012 Cupriavidus_taiwanensis_LMG_19424_chromosome_chromosome_2,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Cupriavidus_taiwanensis_B3R8S8_CUPTR.gb Wautersia_Vaneechoutte_et_al._2004 188591847 Genome_Res._18_(9),_1472-1483_(2008) NA NC_010530 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 18490699 1422 2 genomic_DNA NA LMG_19424 NA Wautersia_taiwanensis_(Chen_et_al._2001)_Vaneechoutte_et_al._2004 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 977880 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Cupriavidus Genome_sequence_of_the_beta-rhizobium_Cupriavidus_taiwanensis_and_comparative_genomics_of_rhizobia NA NC_010530.1 GTGGCCGCCACCGCAGGTATCGTGACCACGGCCGACAGCGCCGGCCAGGGTGCAACGGCCGCTGCCCGCGGCGGCCCGGTCACGCGCGGCAATATCGTTGCCCGCATCGAGCGCATGCCGGGCAACGCCATGCATGTCCGCGCCCGGCTGCTGATCGGCCTGGCCACCTTCTTCGATGGCTTCGACGTGATTGCCATCGCCGCCACGTTGCCGCTGCTGATCGCACAGTGGTCTCTCACGCCGGGGCAGATCGGCTTCCTGATCGCGGCGCCCTCGGTCGGCCAGCTGGTCGGGGCGCTGCTGTTCCCGGGACTGGCCGAGCGCTTCGGCCGGCTTCGATCGATCGGCTGGAGCGCGGGCATCATCGGCCTGATGAGCCTGGCCTGCGGCTTTGCGCCATCGTTCGAGATCTTCGCGCTGCTGCGCATCGTGCAGGGCCTGGGGCTGGGCGGCGAACTGCCAGTGGCCGCGACCTATATCAACGAGGTCACGCGCGCACATGGCCGCGGACGCTTCGTGCTGCTGTACGAGGTGGTGTTCCCGATCGGGCTGATGGTGTCCAACGGCATCGGCGCCTGGCTGGTGCCGCACTACGGCTGGGAGGTGATGTACTTCATCGGTGGCGTGCCGCTGGTGCTGTTCTTTATCCTGCGCAGGCTGATTCCGGAATCGCCGCGCTGGCTGGCGGAAAAAGGCCGGCTGGAAGAGGCGGACGCCGCGCTGCGCGCCTTCGAGGCGCGGGCGCGCACGCCGCTGCCGCCGCCGGCCGATGCCAGCGCCTACGAACGCATGGGCCAGCACCCGCGCCGGCGCGTGCGCGACCTCGTCAGCAAGGCCTATCTCGGCCGCACGCTGGCGGTATGGATGCTGTGGGCCACCTGCGGCTTTATCCAGTATGGGCTGTCGACCTGGCTGCCGACCGTCTACAAGACCGTCTACCACGCGCCGCTGCAGCTCGCGCTGAACCTCGCCGCGGCGGCGTCGGTGCTGGGCGTGGTGGGCTCGCTGGTCTGCGCCATGATCGTCGACAAGGTCGGGCGCAAGCCGGTGATCAACGTGTCGTTCCTGCTGTGCGCGCTGTCGCTGGTGCTGGCGGGCGTGTTCCACGCCGCCAGCGTGTACGTGGTCGCGACCTTCTGCGCGCTGGCGATGGGCTTCCTCGCCAGCGGCTTTATCACCGCCTACGTCTACACGCCGGAGCTGTATCCGACCAGCGTGCGGGCCATGGGCTGCGGCCTCGGCGGCGCCTGGCTGAAGCTGGCGGCGATCTTCGCGCCGGGGCTGATGGCCAGCACCATCGGCAGCGGCGACCTGAGCTTCGCCTTCTTTGCGCTGTCGGTGGTGCCGGCGCTGGCGGCCGTCACCGTGCATTGCCTGGGCATCGAGACCAAGGGGCGGGTGCTGGAGGAGCTGGAGGTCTGA > 406 DEHA2D00440g weakly_similar_to_uniprot|P32466_Saccharomyces_cerevisiae_YDR345C_HXT3_Low_affinity_glucose_transporter_of_the_major_facilitator_superfamily DEHA2D00440p CAR65604.1 12 MTDARDDKSNNVAISVGGDYSDAECQRELKLEDVTPKLTKWFFQYPHLLKLNIFLGCALFGMVTQGYDGTLMGNLQTIPTWNSYFNNPSGERLSTLSNGQVFGSIASVPFLVIVGDRIGRKHMLLIGVILSIVGAGIQAGAVNYGMFLTSRIVLGLGSGATQVSSAPLLAETAYPSQRPAITSMMQASFPAGAFLAALFVYAGFESDLKYNDWSWRMPSVLQGACPIIQLVLVFFCPESPRWLIAHNKEDEAFEVLTKYHAGGDRNSELVKFEMAEIKAAIANEQSGRKVSWLTWFQTKANFHRLFLTIALPTIIQLCGSSLVSYYFSIVLEGIGYTNPVEKLKINIGYTVFGGVFGVVAALYSGNVKRRILMLGSLGLMLITFVIWTILSAVNEQTNQENKSLGRGIVAVMYFHSGFYHMLSPIGNTYVMEVVPYTLRGKAALVYSLSSQAWVLFNNYVNNLGLDSISWRYYIVFCVWLFVHMVVIYFFFPETKGLGLEEMAQIFGEDITDLTMDADNAIIEPREHDLKSQVDHIESVSPQNSANVKLSN Saccharomycetes Debaryomyces_hansenii Debaryomyces_hansenii CR382136 37305..38960 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1656 On_Sep_10,_2008_this_sequence_version_replaced_gi:49654140.This_is_an_updated_version_of_the_complete_genome_sequence._TheDebaryomyces_hansenii_sequence_is_made_of_7_chromosomes_(A_to_G).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 10-SEP-2008 Debaryomyces_hansenii_strain_CBS767_chromosome_A_complete_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Debaryomyces_hansenii_B5RTP8_DEBHA.gb Wingea 199431295 Nature_430_(6995),_35-44_(2004) fungi CR382136 NA NA budding_yeasts sac_fungi 15229592 1656 D genomic_DNA 4959 CBS767 NA Torulaspora_hansenii NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 4959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Debaryomyces Genome_evolution_in_yeasts NA CR382136.2 ATGACAGATGCTCGTGACGATAAAAGCAATAATGTTGCAATTCTGGTTGGGGGCGATTATTCAGATGCAGAATGTCAAAGAGAACTAAAATTGGAAGATGTTACACCAAAACTAACAAAATGGTTTTTTCAATACCCACATTTGTTAAAGTTAAATATATTTTTAGGCTGTGCTTTATTTGGTATGGTAACTCAAGGATATGACGGTACTTTGATGGGTAATTTACAAACAATTCCCACCTGGAACAGTTATTTTAATAATCCTTCTGGTGAAAGGTTGAGTACTTTGTCAAACGGTCAAGTATTTGGGTCCATAGCTTCGGTGCCATTCTTGGTTATAGTTGGTGACCGTATTGGAAGAAAACATATGCTTCTTATTGGTGTTATTTTATCAATCGTTGGAGCCGGAATACAGGCCGGTGCAGTTAACTATGGTATGTTTCTCACATCTCGTATTGTTTTGGGCCTTGGTTCTGGTGCAACGCAGGTTTCGTCTGCACCATTGCTAGCCGAAACAGCCTACCCTTCTCAAAGACCAGCTATAACAAGTATGATGCAAGCGAGCTTTCCTGCTGGAGCATTTTTGGCAGCACTTTTTGTATATGCTGGTTTTGAATCAGATTTGAAGTATAACGATTGGTCTTGGCGTATGCCTTCAGTTCTACAGGGTGCGTGTCCAATAATTCAATTAGTTTTGGTATTTTTTTGTCCAGAATCACCAAGATGGCTTATAGCTCACAACAAAGAGGACGAGGCATTTGAAGTTTTGACTAAGTATCATGCAGGTGGAGATAGGAATAGCGAGCTAGTTAAATTTGAAATGGCTGAAATTAAAGCTGCAATTGCCAATGAGCAGAGTGGAAGGAAGGTTTCCTGGTTAACATGGTTTCAAACAAAAGCAAATTTTCATAGATTATTTCTCACAATTGCGTTACCAACCATTATACAATTGTGTGGATCTTCACTCGTATCATACTATTTTTCCATTGTTCTTGAAGGTATTGGTTATACTAATCCGGTTGAAAAGTTGAAAATCAATATTGGATATACTGTGTTTGGTGGTGTGTTTGGAGTAGTTGCCGCATTGTATTCTGGTAATGTAAAACGCAGAATTTTGATGTTAGGAAGCCTTGGGTTAATGTTGATAACATTTGTCATTTGGACTATATTGTCAGCTGTAAATGAACAAACAAATCAAGAGAACAAATCATTAGGTAGAGGAATTGTGGCAGTAATGTATTTTCATTCAGGATTTTATCATATGTTGTCTCCAATTGGTAATACATACGTCATGGAGGTTGTTCCTTATACCCTAAGAGGCAAAGCTGCACTTGTGTATTCATTAAGTTCGCAAGCATGGGTTTTGTTTAACAATTACGTTAACAACCTTGGGTTGGATTCCATTTCATGGAGATATTATATTGTATTTTGTGTTTGGTTGTTTGTGCACATGGTCGTTATCTATTTCTTCTTTCCTGAGACCAAGGGATTGGGCTTGGAAGAAATGGCCCAGATATTTGGGGAAGATATTACTGATTTGACAATGGATGCCGATAATGCAATTATCGAACCTAGAGAGCATGACTTAAAAAGTCAAGTAGATCATATTGAAAGTGTTTCTCCGCAAAACTCAGCTAATGTAAAACTATCAAACTAA > 407 DEHA2F19140g weakly_similar_to_uniprot|Q12407_Saccharomyces_cerevisiae_YDL199C DEHA2F19140p CAR66371.1 12 MSSLLTNKYFKDYYNNPSPTAIGTMIAILEIGALISSFVAGKVGDHIGRRRTIRYGSFIFIIGGLIQTSSINIINLGAGRFISGVAIGFLTTIIPCYQSEISPPDDRGFYACLEFTGNIIGYSTSIWVDYGFSFIENDYSWRTPLAIQCVMGGLLFIGSFVIVETPRWLLDHDHDIEGMIVISDLYGDGDVEDELSKTEYRNIKENILIARVEGGERSYRYMLTKYKKRLSVACFSQMFAQLNGINMVSYYAPMIFESAGWVGRQAILMTGINSIVYVLSTIPPWYLVDGWGRKPLLLSGAVVMGIPLLVISYSLFLDNIYTPNIVVVSVIIFNAAFGASWGPIPWMMNEVLPNSIRSKGAAMSTATNWLFNFIVGEMTPILLDTIKWRTYLISAVSCALSFLCVHFLFPETKGLSLEDMGSVFDDNSSIFSFHSGASSGNNASTTTINNYGAADRDSGIEVRRTSISVETPNHANIVNEAFRQSPASIARNSKAKPELDGLITGNPPPVPPDLSVLDSNVPPQEIEPPSFDVIFKYKVRQLEKPNIFQKAFRAISGDSTFKPPQIDEERTLLSNN Saccharomycetes Debaryomyces_hansenii Debaryomyces_hansenii CR382138 1604041..1605771 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1731 On_Sep_16,_2008_this_sequence_version_replaced_gi:49656035.This_is_an_updated_version_of_the_complete_genome_sequence._TheDebaryomyces_hansenii_sequence_is_made_of_7_chromosomes_(A_to_G).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 17-SEP-2008 Debaryomyces_hansenii_strain_CBS767_chromosome_F_complete_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Debaryomyces_hansenii_B5RUJ3_DEBHA.gb Wingea 202952834 Nature_430_(6995),_35-44_(2004) fungi CR382138 NA NA budding_yeasts sac_fungi 15229592 1731 F genomic_DNA 4959 CBS767 NA Torulaspora_hansenii NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 4959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Debaryomyces Genome_evolution_in_yeasts NA CR382138.2 TCAATTATTCGAGAGCAAAGTACGTTCTTCGTCGATCTGTGGTGGTTTGAACGTACTATCACCGGAGATTGCACGGAAAGCCTTTTGGAATATGTTTGGTTTCTCTAATTGGCGAACTTTATATTTGAAAATGACGTCGAATGAAGGTGGTTCGATTTCTTGTGGAGGTACATTGGAGTCCAAGACCGAGAGGTCAGGTGGTACGGGTGGTGGATTACCAGTAATAAGACCGTCTAACTCTGGTTTGGCCTTTGAATTACGAGCAATTGATGCTGGGGATTGGCGAAATGCTTCATTAACTATGTTTGCATGGTTTGGAGTTTCAACGGAGATACTAGTTCTGCGAACCTCGATACCGCTATCTCTATCTGCAGCCCCGTAGTTATTGATAGTAGTAGTTGATGCATTGTTTCCACTGGATGCACCCGAATGGAACGAAAAAATAGACGAGTTATCATCAAATACGGAGCCCATGTCCTCTAAGCTCAACCCCTTTGTTTCCGGAAACAAGAAGTGGACGCATAAAAATGATAATGCACACGAGACGGCTGAGATCAAATAGGTTCTCCATTTAATGGTATCCAACAATATTGGGGTCATTTCCCCTACGATGAAGTTGAATAGCCAATTAGTTGCAGTGGACATGGCAGCACCTTTAGATCTAATACTATTAGGTAATACTTCATTCATCATCCATGGGATTGGCCCCCAACTTGCACCAAATGCAGCATTGAATATGATCACCGATACAACCACTATGTTTGGGGTATAAATGTTATCAAGGAATAATGAATACGAAATCACTAATAATGGTATACCCATGACAACAGCGCCAGACAACAATAACGGCTTTCTGCCCCAACCATCCACCAAATACCATGGCGGAATTGTACTCAATACGTAAACTATGGAATTAATACCAGTCATTAAAATGGCCTGTCTACCAACCCAACCGGCCAGCTCAAAAATCATAGGCGCATAATAGGAAACCATATTAATACCATTCAATTGTGCAAACATCTGCGAAAAGCACGCAACTGAAAGACGTTTCTTATACTTAGTTAACATATAACGATATGAACGTTCCCCTCCTTCCACTCTTGCGATGAGAATGTTTTCCTTAATGTTTCTATATTCCGTTTTAGATAATTCGTCTTCAACATCACCATCACCATACAAATCAGAAATCACAATCATTCCTTCAATATCATGATCATGATCTAAAAGCCATCTTGGAGTTTCTACGATTACGAATGATCCAATAAACAAAAGGCCACCCATGACACATTGGATGGCCAATGGAGTTCTCCATGAGTAGTCATTTTCTATGAACGAAAACCCATAATCCACCCAAATACTTGTAGAGTAACCAATGATGTTACCAGTAAATTCTAAGCACGCATAGAATCCTCTATCATCAGGTGGACTGATTTCAGACTGATAGCATGGAATGATAGTAGTCAAAAACCCAATTGCCACACCACTGATAAACCTTCCTGCCCCTAAGTTAATAATATTGATTGACGAAGTTTGGATAAGCCCCCCGATTATGAAGATAAACGATCCATAACGTATAGTGCGTCTTCTTCCGATATGATCACCAACTTTACCCGCAACGAACGATGATATCAAAGCACCAATCTCTAGGATGGCGATCATAGTACCAATCGCCGTTGGACTTGGATTATTGTAATAGTCTTTGAAATATTTGTTGGTCAATAACGAAGACAT > 408 DEHA2F20262g weakly_similar_to_uniprot|P32466_Saccharomyces_cerevisiae_YDR345C_HXT3_Low_affinity_glucose_transporter_of_the_major_facilitator_superfamily DEHA2F20262p CAR66377.1 12 MSLLEKSSEGFESISENDVKVDDYKKVEAAELGENFNYDKEFEELEQMAIEAKANKTLIQKLMSLEYELHFENKKYMVYLLGGFSAAAGLLSGVDQSIISGARIGMTPVLDLTPTQDSLVSSLMPLGAMLGSIMMTPLNEYFGRKMSIIISCLWYTVGAGLCAGSHTYSMMYAGRFLLGIGVGIEGGCVGIYISESVPARVRGNLVSLYQFNIALGEVLGYAISAIFYDVHGGWRFMLGSSLVFSTALMVGMFFLPESPRYLVHKNKIGEAYDVWKRLRDISLEENKLEFLDMRQAAYQEQEAKATESKARLWTDLFRIPRNRRALVYAVIMVGLGQLTGVNAVMYYMSTLMGKIGFDEKNSVFMSLVGGGSLLIGAIPAILWMDRFGRRVWGLNIVGFFIGLVLVGVGYTIPLETNKNAAMGVYLTGIILYMGFFGSYACLTWVLPSESFDLRTRSLGMTICSTFLYLWSFIVTYNFDGMQNAMTYPGLTLGFYGGIAFVGFFYQIFFMPETKDKTLEEIDDIFSKPTRVIVRENVVGMKKFWGIS Saccharomycetes Debaryomyces_hansenii Debaryomyces_hansenii CR382138 1698243..1699886 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1644 On_Sep_16,_2008_this_sequence_version_replaced_gi:49656035.This_is_an_updated_version_of_the_complete_genome_sequence._TheDebaryomyces_hansenii_sequence_is_made_of_7_chromosomes_(A_to_G).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 17-SEP-2008 Debaryomyces_hansenii_strain_CBS767_chromosome_F_complete_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Debaryomyces_hansenii_B5RUJ9_DEBHA.gb Wingea 202952834 Nature_430_(6995),_35-44_(2004) fungi CR382138 NA NA budding_yeasts sac_fungi 15229592 1644 F genomic_DNA 4959 CBS767 NA Torulaspora_hansenii NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 4959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Debaryomyces Genome_evolution_in_yeasts NA CR382138.2 CTAGCTTATACCCCAGAATTTCTTCATGCCCACAACGTTTTCTCTTACTATAACTCTGGTAGGCTTTGAAAAAATATCATCAATTTCTTCTAATGTCTTGTCTTTCGTTTCTGGCATGAAAAAGATTTGGTAGAAAAACCCAACGAATGCGATCCCACCATAGAACCCTAAGGTTAAACCGGGATAAGTCATTGCATTCTGCATTCCATCGAAATTATATGTCACAATGAAAGACCATAAATATAAAAAGGTTGAACATATAGTCATACCAAGGGATCTGGTTCTCAAATCGAATGATTCAGATGGCAAAACCCATGTCAAACAGGCATATGATCCAAAGAAACCCATATAAAGGATAATACCAGTCAAATAGACACCCATTGCTGCATTTTTATTAGTCTCAAGAGGAATAGTATAGCCAACACCAACAAGAACCAAACCGATGAAGAAACCCACAATGTTCAAACCCCATACACGACGACCAAATCTATCCATCCATAAGATAGCTGGAATAGCACCGATCAACAAGGAGCCACCACCTACTAAGGACATGAAAACAGAATTTTTCTCGTCAAAACCGATCTTACCCATCAAAGTAGACATATAATACATGACAGCATTAACCCCTGTCAATTGACCTAATCCAACCATGATAACAGCATAAACTAATGCACGACGGTTTCTTGGGATTCTGAATAAATCTGTCCATAATCTTGCCTTGCTTTCAGTTGCCTTTGCTTCTTGTTCTTGGTAAGCGGCTTGTCTCATATCTAAGAATTCTAATTTATTCTCCTCAAGACTAATATCTCTCAATCTCTTCCACACATCATATGCTTCACCAATTTTATTCTTGTGAACTAAATAACGGGGAGATTCTGGTAAGAAAAACATACCTACCATTAATGCAGTAGAGAATACCAATGATGATCCAAGCATGAATCTCCAGCCACCGTGTACGTCATAGAAAATAGCAGAAATCGCATACCCTAGAACTTCACCAAGAGCAATATTAAATTGATATAACGAAACAAGGTTACCACGAACTCTAGCTGGAACAGATTCTGAAATGTAAATACCTACACAACCACCTTCAATACCAACTCCGATACCAAGTAAGAATCTCCCTGCGTACATCATACTGTATGTATGCGATCCAGCACATAATCCAGCACCAACTGTATACCAAAGACATGAAATAATAATAGACATTTTTCTACCGAAATATTCGTTTAATGGTGTCATCATAATACTACCCAACATGGCCCCTAAAGGCATCAAACTCGAAACAAGCGAATCTTGTGTAGGAGTCAAGTCCAATACCGGCGTCATACCAATTCTTGCTCCTGAGATAATGGACTGATCAACACCCGATAATAATCCAGCAGCAGCACTAAAACCACCTAATAAATAGACCATGTATTTCTTATTCTCGAAATGCAATTCATATTCTAATGACATTAATTTCTGAATTAACGTCTTATTGGCTTTGGCTTCGATAGCCATTTGCTCCAATTCTTCGAACTCCTTATCATAGTTAAAGTTCTCACCTAGTTCTGCGGCTTCTACCTTCTTGTAGTCATCGACCTTAACGTCGTTTTCACTTATCGACTCAAACCCTTCGGACAGTTTTTCTAAAAGACTCAT > 409 DEHA2G06402g weakly_similar_to_uniprot|P32467_Saccharomyces_cerevisiae_YHR092C_HXT4_High-affinity_glucose_transporter_of_the_major_facilitator_superfamily DEHA2G06402p CAG90286.1 12 MGGQVKTETIVEAVSIDGREKDADVVTDGEIKYNDIPWYKVPHLRYLNFCIFLISLTSTNNGYDGSMLNGLQSLSFWQDSMGHPTGYILGALSNGTIFGSLLTIWFGPYISDRFGRRFGIVVGQTLTVVGAILQGASTNYAFFLISRMIIGFGSCTATISSPSLISEIAYPTHRQVATTFYNTCWYLGAVIAAWVTYGTRVIDNEYCWRIPSYLQGALAVVQLALFWMVPESPRYLINKGKIEQAEAILMKHHVGNAQDPESIALVKFEVQEIRAALEMEKISAHTRYTDFFKTPANRKRLFICILVPTIMQLSGNGLVSYYLNLVLNSIGITGETDQLEINGGLMVYNMVTAMSVAVVVNRFRRRTLFLTSISFMLVSYVIWTILSAINQQRGFEEKSLGNGVLAMIFFFYLAYNIGANGLPYLYLTEILPYNQRAKGINIMQVTNNIVLIYNGFVNPIAMDAIEWKYYIVYCCILVVELILVFFFFPETSGYTLEEVCKVFGDEPPELVAIAEPKSKISFDHIENV Saccharomycetes Debaryomyces_hansenii Debaryomyces_hansenii CR382139 552197..553783 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1587 On_Sep_10,_2008_this_sequence_version_replaced_gi:49657202.This_is_an_updated_version_of_the_complete_genome_sequence._TheDebaryomyces_hansenii_sequence_is_made_of_7_chromosomes_(A_to_G).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 10-SEP-2008 Debaryomyces_hansenii_strain_CBS767_chromosome_G_complete_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Debaryomyces_hansenii_Q6BIZ6_DEBHA.gb Wingea 199433770 Nature_430_(6995),_35-44_(2004) fungi CR382139 NA NA budding_yeasts sac_fungi 15229592 1587 G genomic_DNA 4959 CBS767 NA Torulaspora_hansenii NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 4959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Debaryomyces Genome_evolution_in_yeasts NA CR382139.2 TTAAACATTTTCGATATGATCAAAAGAAATTTTGGATTTTGGTTCAGCGATGGCAACTAATTCAGGTGGTTCATCACCAAAAACTTTGCAAACTTCTTCCAAAGTGTATCCAGATGTTTCAGGAAAGAAAAAGAATACAAGAATTAGTTCAACCACGAGAATGCAACAGTAGACAATGTAGTACTTCCATTCAATAGCATCCATGGCAATTGGATTGACAAACCCATTGTAGATCAACACGATGTTATTTGTAACTTGCATGATATTAATACCCTTCGCTCTTTGATTATATGGTAAAATTTCAGTTAAATACAAGTAAGGCAAACCATTAGCACCGATATTATAGGCCAAGTAAAAGAAGAAAATCATTGCAAGTACACCATTACCTAGCGATTTTTCTTCAAAACCACGTTGCTGGTTAATTGCTGATAATATTGTCCAAATAACATAACTGACTAACATGAATGAAATCGATGTTAAGAACAAGGTTCTTCTTCTGAACCTATTAACAACCACTGCAACAGACATGGCAGTTACCATATTATAAACCATCAATCCACCATTAATCTCTAATTGGTCAGTTTCACCAGTGATACCAATAGAGTTCAAAACCAAGTTTAAATAATACGACACTAAACCATTACCTGAAAGTTGCATAATTGTTGGCACCAAAATACAGATGAATAAACGTTTACGGTTGGCAGGTGTCTTGAAGAAATCAGTGTAGCGAGTGTGAGCAGAAATCTTTTCCATTTCAAGAGCAGCACGAATTTCTTGAACTTCAAATTTAACTAATGCAATAGACTCTGGATCTTGTGCATTCCCTACGTGGTGCTTCATTAAGATGGCTTCAGCTTGTTCAATTTTACCCTTATTAATTAAGTATCTTGGCGACTCTGGAACCATCCAGAATAATGCGAGCTGAACAACGGCTAATGCTCCTTGTAAATACGAAGGAATTCTCCAGCAATATTCGTTATCAATGACCCTCGTGCCGTAGGTAACCCATGCAGCAATTACAGCACCAAGGTACCAGCAAGTATTGTAGAATGTGGTTGCGACTTGTCTATGGGTTGGATATGCAATCTCCGAGATCAAGGAAGGGGAGGAGATCGTTGCAGTACAACTACCAAAACCTATAATCATTCTTGAAATTAAGAAGAATGCATAATTAGTAGAAGCACCCTGCAATATAGCACCCACCACAGTTAAGGTCTGACCAACCACAATACCAAATCTTCTTCCAAATCTGTCACTAATATAAGGACCAAACCATATAGTCAAAAGACTACCAAAAATAGTACCGTTAGATAATGCACCTAGAATATACCCTGTGGGGTGTCCCATAGAGTCCTGCCAAAACGATAATGATTGCAACCCATTTAACATAGAGCCATCATATCCATTGTTAGTTGATGTCAAAGAAATCAAGAAAATACAGAAATTAAGGTACCTCAAGTGAGGAACCTTGTACCATGGAATATCATTGTACTTAATTTCACCATCTGTTACTACATCCGCATCCTTTTCCCGTCCATCGATTGATACAGCTTCCACTATTGTTTCTGTCTTTACTTGGCCTCCCAT > 410 DEHA2F00638g weakly_similar_to_uniprot|P32467_Saccharomyces_cerevisiae_YHR092C_HXT4_High-affinity_glucose_transporter_of_the_major_facilitator_superfamily_expression_is_induced_by_low_levels_of_glucose_and_repressed_by_high_levels_of_glucose_and_similar_to_CA0480|IPF8610_Candida_albicans_IPF8610 DEHA2F00638p CAG88691.2 12 MLIKIYNPFKKEEDRPTPSSVYNWRIYFVGLISSFAALEIGYDSGFIGGTLALNSFRKEFGFDRMSESHSSFIISNIVSLFHAGCFFGSILSYPITFYKGRKVVLISSALFMALGAVLMLISNKDRGLGPIYAGRILAGIGVGQSTSIVPTFLSEISPPPIRGRVSAMYEIGWRTGDLIGFWVSYAVDENMSTGYVQWILPFAIQIIPAALYLALVWWVKESPRWLFSVGKDSEAIENSKFYRKLDDGNDYLLSEISSIKESVNEAKKKVGTGIAGPFLILLREPKLQKRLLVTASLYVFQNLLGVQSINYYSPIIFGKIGVDGTNATLFSTGMFGVVKYIATIIWLMFIVEQIGRRNTLLYVSPICAVCFFYIGAYLKVEGGAAAGRAALGLMYVWCFFFIIGWSGTPYIVGAEVFDNSLRASFQAINSMFLWLSVFFMTRFTTDMIEGMDYGIFFFFASMALISIPWVYFLLPETKGIPLENMEELFDYPAPRAHILVFNSLKCGSDILQDKADESSLTSNGNLKQETIHVEKVV Saccharomycetes Debaryomyces_hansenii Debaryomyces_hansenii CR382138 60636..62249 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1614 On_Sep_16,_2008_this_sequence_version_replaced_gi:49656035.This_is_an_updated_version_of_the_complete_genome_sequence._TheDebaryomyces_hansenii_sequence_is_made_of_7_chromosomes_(A_to_G).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 17-SEP-2008 Debaryomyces_hansenii_strain_CBS767_chromosome_F_complete_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Debaryomyces_hansenii_Q6BN33_DEBHA.gb Wingea 202952834 Nature_430_(6995),_35-44_(2004) fungi CR382138 NA NA budding_yeasts sac_fungi 15229592 1614 F genomic_DNA 4959 CBS767 NA Torulaspora_hansenii NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 4959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Debaryomyces Genome_evolution_in_yeasts NA CR382138.2 ATGCTAATAAAAATCTATAATCCGTTCAAGAAAGAAGAAGACAGACCAACTCCTCTGCTGGTTTATAATTGGAGAATCTATTTTGTAGGACTAATTTCTTCGTTTGCAGCCCTAGAAATCGGGTATGATTCTGGATTTATAGGAGGTACTCTTGCGCTTAACTCATTTAGAAAAGAGTTTGGATTTGATAGAATGTCAGAAAGCCATAGTAGTTTTATTATATCCAATATTGTATCATTGTTTCACGCTGGATGCTTTTTTGGCTCAATATTGTCTTATCCTATTACATTTTATAAAGGAAGAAAAGTCGTACTAATATCATCAGCACTTTTCATGGCATTGGGAGCAGTTTTAATGTTAATTTCTAATAAAGATAGAGGTTTAGGGCCGATATATGCGGGAAGAATTTTGGCTGGTATAGGTGTAGGGCAATCAACCTCAATTGTTCCAACGTTTTTATCAGAGATCTCTCCGCCTCCAATCAGAGGTAGAGTTAGTGCTATGTATGAAATAGGCTGGAGAACTGGTGATCTCATAGGGTTTTGGGTTAGTTATGCGGTTGATGAAAATATGTCAACGGGATATGTGCAATGGATTCTTCCTTTTGCGATACAGATTATACCTGCCGCTTTATATTTGGCATTGGTTTGGTGGGTGAAAGAATCTCCTCGATGGCTCTTCTCCGTTGGAAAAGATTCTGAAGCTATAGAAAACTCAAAGTTTTATAGAAAGCTAGATGATGGTAATGACTACTTATTGTCTGAAATATCATCCATCAAAGAGCTGGTAAATGAAGCCAAGAAAAAAGTAGGTACAGGTATTGCAGGGCCTTTTCTTATTCTCTTGAGGGAACCAAAATTACAAAAAAGATTACTCGTGACGGCTTCTTTATATGTGTTTCAGAATTTGCTAGGTGTTCAGTCTATAAACTATTATTCACCAATAATATTTGGAAAAATTGGGGTTGATGGAACCAATGCGACCTTGTTTTCAACCGGTATGTTTGGAGTTGTTAAGTATATTGCCACTATAATTTGGTTGATGTTCATAGTAGAACAGATCGGTAGGAGGAATACATTACTATACGTTTCACCAATATGTGCTGTTTGTTTCTTCTATATCGGAGCATATCTTAAGGTTGAAGGCGGAGCTGCAGCAGGTAGGGCGGCATTAGGATTAATGTATGTGTGGTGCTTCTTTTTTATAATTGGCTGGTCTGGGACGCCATATATTGTAGGTGCTGAAGTATTCGACAATTCTTTAAGGGCATCTTTTCAAGCAATAAATTCGATGTTCTTATGGCTATCTGTGTTTTTCATGACCAGGTTCACTACAGATATGATTGAAGGTATGGATTACGGTATATTCTTTTTCTTTGCATCAATGGCGCTAATATCCATACCATGGGTTTATTTCCTTCTTCCAGAAACAAAAGGAATACCATTAGAGAACATGGAAGAGCTCTTTGACTACCCAGCCCCACGAGCACATATTCTTGTTTTCAACAGCTTAAAATGTGGTCTGGATATACTTCAAGATAAGGCGGATGAAAGTTCTCTAACATCGAATGGGAATCTAAAGCAGGAAACTATACATGTCGAAAAGGTAGTTTAG > 411 DEHA2F00572g similar_to_uniprot|P39932_Saccharomyces_cerevisiae_YDR536w_STL1_Glycerol_proton_symporter_of_the_plasma_membrane_subject_to_glucose-induced_inactivation_strongly_but_transiently_induced_when_cells_are_subjected_to_osmotic_shock DEHA2F00572p CAG88688.2 12 MGLRGRALRVAITFTAVSGFSFFGYDQGLMSGIITGDQFNKEFPPTAGKSHDAVVNQGGVVSCYEIGCFFGALFALFQGDKYGRRPMLIIGSLLIILGTVISVASFGPHWGLGQFIIGRVITGLGNGMDTATIPVWQSEISRAENRGKLVNLEGSMIAIGTFVAYWVVFGLSYVDTSVQWRFPVAFQAIFGIVLFGAIINMPESPRWLIAHDKKDEANYVLAALSDVDITDDIVIAESGVITDGVNRFSRSEVGFKELFSGGRSQHFSRMIIGASTQFFQQFTGCNASIYYSTVLFENLGMGEDFEKLPLIMGGVFATVYALATIPSFFLIDRLGRRALFLIGATGQAIAFTITFACLIPDDGQNKETAKGAAVGIFLFIAFFAFTLLPLPWIYPPEINPLRTRTVASAISTCTNWLSNFTVVMFTPLFMNESQFGCYLFFAIFNYILIPTTIWFYPETAGRSLEEIDIIFAKAYVDKRPPWRVAATMPRLSLQEQDEEAIKLGLFDEFEKEGFEHSENLSSHSSRKTPEDRSHDESLVRPEGV Saccharomycetes Debaryomyces_hansenii Debaryomyces_hansenii CR382138 53845..55479 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1635 On_Sep_16,_2008_this_sequence_version_replaced_gi:49656035.This_is_an_updated_version_of_the_complete_genome_sequence._TheDebaryomyces_hansenii_sequence_is_made_of_7_chromosomes_(A_to_G).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 17-SEP-2008 Debaryomyces_hansenii_strain_CBS767_chromosome_F_complete_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Debaryomyces_hansenii_Q6BN36_DEBHA.gb Wingea 202952834 Nature_430_(6995),_35-44_(2004) fungi CR382138 NA NA budding_yeasts sac_fungi 15229592 1635 F genomic_DNA 4959 CBS767 NA Torulaspora_hansenii NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 4959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Debaryomyces Genome_evolution_in_yeasts NA CR382138.2 CTAAACCCCTTCTGGTCTTACTAAAGATTCATCGTGTGATCTATCTTCTGGAGTCTTACGCGAAGAATGAGATGAAAGATTTTCACTGTGTTCAAATCCTTCTTTTTCAAACTCGTCAAAGAGACCCAATTTAATTGCTTCTTCATCTTGTTCTTGCAAGGATAAGCGAGGCATAGTAGCAGCTACTCTCCATGGTGGTCTCTTATCAACATATGCCTTGGCGAAAATGATATCAATTTCTTCTAACGAACGACCAGCAGTTTCGGGGTAAAACCAAATCGTAGTTGGGATCAAAATGTAATTGAAAATAGCAAAAAATAAGTAACAGCCGAATTGGCTCTCATTCATAAAAAGGGGTGTGAACATAACAACTGTGAAGTTACTCAACCAATTGGTACAAGTAGATATAGCAGAAGCAACCGTTCTCGTTCTCAATGGATTAATTTCTGGTGGATAAATCCATGGCAATGGCAAAAGAGTGAAAGCGAAGAAGGCAATAAACAAGAAGATACCAACGGCTGCACCTTTAGCCGTTTCTTTATTTTGGCCGTCATCGGGAATCAAACATGCAAAAGTAATTGTGAATGCTATAGCTTGACCAGTAGCACCAATAAGAAATAATGCTCTTCTACCTAGTCTATCAATTAAAAAAAAGGATGGAATAGTAGCCAAAGCATAAACGGTGGCAAATACTCCTCCCATGATTAAGGGCAATTTTTCAAAATCTTCACCCATTCCCAAGTTCTCAAATAAAACTGTAGAATAGTAAATAGAAGCATTACACCCAGTGAATTGTTGAAAAAATTGGGTAGAGGCACCAATAATCATTCTTGAAAAATGTTGCAGCCTACCGCCTGAGAATAATTCCTTAAAGCCAACTTCTGATCTTGAAAACCTATTAACACCATCAGTTATGACACCGCTTTCAGCAATAACAATATCGTCTGTAATATCCACATCACTCAAAGCCGCTAAGACGTAATTAGCTTCATCTTTTTTATCATGGGCAATTAACCATCTTGGTGATTCAGGCATGTTGATAATTGCCCCAAATAAAACAATACCAAAAATTGCTTGAAAAGCCACTGGAAATCTCCATTGCACAGAAGTATCGACGTACGATAATCCAAAAACAACCCAATATGCCACAAATGTACCTATTGCGATCATGGAACCTTCTAAGTTAACCAATTTTCCTCTATTTTCTGCTCGAGAAATTTCAGATTGCCATACTGGAATTGTGGCAGTATCCATACCGTTACCTAATCCTGTAATGACTCTACCGATAATGAATTGACCTAATCCCCAATGTGGGCCAAAGGATGCAACAGAAATAACAGTGCCAAGAATAATAAGTAAGGAACCTATGATCAACATTGGTCTTCTACCATACTTGTCACCTTGAAATAATGCAAATAAGGCACCAAAAAAACATCCGATTTCATAACATGAAACAACTCCCCCTTGGTTAACCACAGCATCATGGCTCTTACCAGCTGTTGGAGGAAATTCTTTGTTGAATTGGTCACCAGTAATAATACCTGACATTAAACCTTGATCATAACCGAAAAAAGAGAATCCACTAACGGCCGTGAATGTGATGGCTACCCTAAGGGCTCTGCCTCTTAGACCCAT > 412 DEHA2E20460g similar_to_uniprot|P32467_Saccharomyces_cerevisiae_YHR092C_HXT4_High-affinity_glucose_transporter_of_the_major_facilitator_superfamily_expression_is_induced_by_low_levels_of_glucose_and_repressed_by_high_levels_of_glucose DEHA2E20460p CAG88464.2 12 MGDKMSKSQSFISSQSSQKLDTSSMTQSVVSEPRRSVLNKIIGGFKFEKVEDRPTPSEVYNWRVYGTALLASSAAIIIGYDGGFIGGTVALPSFKSEFGLDKMSESEAGDIISNVISVFHAGCFFGALISYPFSFYLGRRLSLIISATAITIGSAIMLAASSKNGLGPIYAGRVIAGLAVGFSTNLTPVYLSEISPPAIRGRVIALYEIGWRVGDLVGFWINYGIDSHMGPSKTQWFIPFAVQLIPSGIFFAGSVIMKESPRWLYSVGKHDQAIKNLKWFRNLPEDDEYMVYEVNQVKESIESQKLHIGLKLWDPFKQVFFKDHKILFRLLITCSLFLFQNFLGIQSINYYSPIIFANLGVKGTNATLFSTGMFGVVKFVCTFIYILFIVDTFGRRKAFMVSSTVCSICFWYIGAYLKVNDPSQPGVQAGPGGTAAIVMMYFWIASFILAWSGGPFVVGSEVFDQNIRSFVQAINAAISWIPIFIMSRFTTKMIDKMEYGIYFFFASLAALSVPFVFFCVPETKGIALEDMDKIFDRSLPARKAHKVVLGQVRANAISQLEGHRGLYKMDTNKSNEIQNIEDLELMVKNEK Saccharomycetes Debaryomyces_hansenii Debaryomyces_hansenii CR382137 1689622..1691397 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1776 On_Sep_10,_2008_this_sequence_version_replaced_gi:49654999.This_is_an_updated_version_of_the_complete_genome_sequence._TheDebaryomyces_hansenii_sequence_is_made_of_7_chromosomes_(A_to_G).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 10-SEP-2008 Debaryomyces_hansenii_strain_CBS767_chromosome_E_complete_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Debaryomyces_hansenii_Q6BNM9_DEBHA.gb Wingea 199432393 Nature_430_(6995),_35-44_(2004) fungi CR382137 NA NA budding_yeasts sac_fungi 15229592 1776 E genomic_DNA 4959 CBS767 NA Torulaspora_hansenii NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 4959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Debaryomyces Genome_evolution_in_yeasts NA CR382137.2 TCACTTCTCGTTTTTGACCATTAACTCTAAATCCTCAATATTTTGAATTTCATTTGATTTGTTAGTGTCCATTTTGTAAAGTCCTCTATGTCCCTCTAATTGACTAATTGCATTGGCTCTAACTTGACCAAGGACGACCTTGTGCGCCTTACGAGCTGGTAATGATCTGTCGAATATTTTATCCATATCCTCCAATGCAATACCTTTAGTCTCAGGAACACAGAAAAATACGAATGGAACAGACAATGCTGCCAAAGATGCAAAGAAAAAGTAAATGCCGTATTCCATTTTGTCAATCATTTTGGTTGTAAACCTTGACATTATGAAAATAGGAATCCAAGAAATAGCAGCATTGATTGCCTGGACAAATGATCTAATATTCTGATCGAATACTTCACTTCCGACAACAAATGGACCACCAGACCAAGCTAAAATAAAAGACGCAATCCAGAAGTACATCATAACAATCGCAGCAGTGCCACCTGGGCCAGCTTGAACTCCTGGTTGAGAAGGATCATTAACCTTCAAATAAGCACCGATGTACCAGAAACAAATAGAACACACTGTGGACGAAACCATGAATGCTTTTCTTCTGCCAAAAGTATCAACAATAAACAAAATATAGATAAAGGTACAAACAAATTTGACGACACCAAACATACCTGTTGAGAATAATGTGGCATTTGTTCCTTTGACCCCTAAATTAGCAAAGATAATAGGGGAGTAATAATTGATAGATTGGATTCCCAAGAAATTTTGAAACAAAAATAACGAACAGGTGATGAGCAATCTAAATAAAATTTTGTGATCTTTGAAGAATACTTGTTTAAATGGGTCCCATAATTTGAGACCAATATGGAGCTTTTGTGATTCTATTGATTCCTTAACTTGATTAACCTCATAAACCATATATTCATCATCTTCTGGCAAATTTCTAAACCATTTTAAATTCTTAATAGCTTGATCATGTTTGCCTACACTGTATAACCATCTTGGACTCTCTTTCATAATAACACTACCAGCAAAAAAAATACCACTTGGAATTAATTGGACAGCAAAAGGAATAAACCATTGCGTTTTGGAAGGACCCATATGAGAATCAATCCCATAGTTAATCCAAAAACCCACTAAATCACCAACTCTCCAACCAATTTCATATAACGCAATCACTCTACCTCTAATCGCAGGTGGTGAAATCTCACTCAAATACACTGGTGTTAGGTTTGTAGAAAAACCAACTGCCAAACCAGCTATTACTCTACCTGCATAAATTGGCCCAAGTCCATTTTTTGACAGAGCTGCCAACATAATAGCCGACCCTATTGTGATTGCTGTGGCACTTATGATCAACGAAAGCCTTCTACCCAAATAGAATGAAAAGGGATATGAAATTAATGCTCCGAAGAAACATCCCGCATGAAAAACTGAAATAACATTAGAAATTATATCTCCTGCTTCACTCTCTGACATTTTATCAAGGCCAAACTCAGATTTAAAAGATGGTAAGGCAACAGTGCCTCCAATAAATCCACCATCATAACCAATAATTATAGCTGCCGATGATGCAAGAAGAGCCGTTCCATATACTCTCCAATTATAGACTTCCGAAGGGGTGGGTCTATCTTCAACTTTTTCGAACTTAAAGCCGCCAATAATCTTATTCAATACCAGGCGACGTGGTTCACTTACTACTGACTGTGTCATAGAAGATGTATCCAATTTTTGTGAAGATTGCAGTGAAATAAACAGTTGAGATTTGCTCATCTTATCGCCCAT > 413 DEHA2E01386g similar_to_uniprot|P39932_Saccharomyces_cerevisiae_YDR536W_STL1_Glycerol_proton_symporter_of_the_plasma_membrane DEHA2E01386p CAG87598.2 12 MYKIWSKTNTMGLRGKPLRVAITICCTIGFSLFGYDQGLMSGIITGKQFNEEFPPTHGTDQHATVIQGAVTSCYELGCFFGALFALFQGDKYGRRPMIIVGSSLIVIGTVIAVSAFGPQWGLGQFVIGRVITGLGNGMDTATIPVWQSEISKAENRGLLVNLEGSMVAVGTFIAYWLDFGLSYVDTSVQWRFPVAFQIVFALFLFLGVAQLPESPRWLIAHGLKDEAHYVLATLNDVDIDDEFVIEESAIITDGVNRFARTQIGFKELFSGGKQQNFARMIIGASTQFFQQFTGCNASIYYSTVLFENSIGLTGKLPLILGGVFATIYALSTIPSFFLIDRLGRRALFLIGATGQGISFTITFACLIPDNGQNKETAKGAAVGIFLFIVFFAFTILPLPWIYPPEINPLRTRTVATAVSTCTNWLTNFAVVMFTPIFIGASSYGCYLFFAIMNFLFIPVIFWFYPETAGRELEEIDIIFAKAYVDNRLPWRVAATLPHLNFKEQEQEGIKLGLYDDFEKEAPEHVNTLSDASGSEDGSNEAASVKPAEV Saccharomycetes Debaryomyces_hansenii Debaryomyces_hansenii CR382137 118585..120234 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1650 On_Sep_10,_2008_this_sequence_version_replaced_gi:49654999.This_is_an_updated_version_of_the_complete_genome_sequence._TheDebaryomyces_hansenii_sequence_is_made_of_7_chromosomes_(A_to_G).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 10-SEP-2008 Debaryomyces_hansenii_strain_CBS767_chromosome_E_complete_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Debaryomyces_hansenii_Q6BQY3_DEBHA.gb Wingea 199432393 Nature_430_(6995),_35-44_(2004) fungi CR382137 NA NA budding_yeasts sac_fungi 15229592 1650 E genomic_DNA 4959 CBS767 NA Torulaspora_hansenii NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 4959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Debaryomyces Genome_evolution_in_yeasts NA CR382137.2 ATGTATAAAATATGGTCAAAAACTAACACTATGGGACTCAGAGGTAAACCTCTTAGAGTTGCCATCACTATATGCTGTACTATTGGATTTTCATTATTCGGTTACGACCAAGGATTAATGTCGGGAATTATTACTGGTAAACAATTCAATGAGGAATTTCCACCCACTCACGGTACAGATCAGCATGCTACTGTTATACAAGGTGCAGTCACGTCGTGCTACGAGTTAGGCTGTTTTTTTGGTGCTTTGTTTGCGTTGTTTCAAGGTGATAAGTATGGTAGAAGGCCAATGATTATTGTTGGATCTCTGCTCATTGTCATAGGTACTGTTATTGCAGTTTCTGCATTTGGTCCGCAATGGGGATTGGGCCAATTTGTTATTGGTAGAGTTATCACAGGATTAGGTAACGGCATGGATACGGCTACTATTCCGGTGTGGCAATCGGAAATTTCTAAGGCAGAAAATAGAGGTCTTTTGGTTAACTTGGAAGGTTCCATGGTTGCGGTTGGGACATTTATTGCATATTGGTTAGATTTTGGGTTATCATATGTCGATACTTCAGTTCAGTGGAGATTCCCAGTTGCTTTTCAGATAGTATTTGCTCTTTTCTTGTTTCTTGGCGTTGCACAATTACCGGAATCACCTAGATGGTTAATTGCTCATGGCCTCAAGGATGAAGCTCATTATGTATTGGCAACTTTAAATGACGTTGATATTGATGATGAGTTCGTAATTGAAGAAAGCGCCATTATAACTGATGGTGTCAATAGATTTGCCAGAACCCAAATTGGGTTCAAAGAACTATTTTCCGGCGGCAAGCAACAGAACTTCGCTAGAATGATAATTGGTGCATCTACACAATTCTTTCAGCAATTTACTGGATGTAACGCTTCCATCTATTATTCAACTGTTTTATTTGAAAATAGTATTGGATTGACCGGTAAATTGCCCTTAATTCTAGGAGGTGTTTTTGCTACCATTTATGCTTTATCTACTATTCCATCTTTCTTCTTGATTGATAGGCTAGGCAGAAGAGCTTTGTTTTTGATCGGTGCCACCGGTCAAGGCATATCATTCACCATCACTTTTGCATGCTTGATCCCTGATAATGGACAAAATAAGGAAACAGCCAAAGGTGCTGCCGTTGGTATCTTCTTGTTTATCGTTTTTTTTGCGTTCACTATTTTACCATTGCCATGGATTTACCCTCCAGAAATCAACCCCTTGAGAACAAGAACAGTTGCTACTGCGGTATCAACATGTACTAATTGGCTAACAAACTTTGCAGTCGTTATGTTTACTCCTATTTTTATTGGTGCAAGTAGTTATGGCTGTTACTTATTCTTTGCTATAATGAATTTCCTTTTCATTCCTGTCATTTTCTGGTTTTATCCCGAGACTGCTGGTCGTGAGTTGGAAGAGATTGATATTATTTTCGCAAAGGCATACGTTGATAATAGACTACCATGGAGAGTTGCTGCTACTTTACCACACTTGAATTTCAAGGAACAAGAACAAGAGGGAATCAAATTGGGTCTTTATGATGACTTCGAAAAGGAAGCACCTGAACATGTAAACACTTTGTCCGACGCCTCAGGCTCAGAAGATGGCTCAAATGAAGCCGCTTCAGTTAAGCCTGCGGAAGTTTAA > 414 DEHA2E01364g similar_to_uniprot|P39932_Saccharomyces_cerevisiae_YDR536W_STL1_Glycerol_proton_symporter_of_the_plasma_membrane DEHA2E01364p CAG87597.2 12 MVLKIWDRTNTFGLRGRSLRLAITVTAVTGFSLFGYDQGLMSGIITGDDFSKEFPAVTNEGAGSEHWATVNQGGVVSCYEIGCFFGALFALFRGDRFGRRPMVIIGSLLIILGTIISTASFGAHWGLGQFIIGRVITGLGNGMDTATIPVWQSEVSRAENRGFLVNLEGSVVAFGTFIAYWLDFGLSYVEGEHASVQWRFPVAFQIFFAAVLFVGIINLPESPRWLIAHGYKDEANYVLASLNDVEIDDDLVIAESTVITDGVNRFARSQVGFKELFSGGKSQHFSRMVIGASTQFFQQFTGCNASIYYSTVLFERLGMADTYEKLPLVMGGVFSTVYALMTIPSFFLIDRLGRRALFLIGAAGQGLAFTIAFVSLIPEDGDSDGGKKAAAVGIFLFIAFFAFTILPLPWVYPPEINPLRTRTVASAISTCTNWLTNFAVVMFTPLFMAESQFGCYLFFALFNYLFIPIIFFFYPETAGRTLEEIDIIFAKAYVDKRQPWRVAATLPHLSLQEQEDEGNKLGIFDEFDKEGFEQSENISSNSSNKSPEDGSNDEPLVKPAEV Saccharomycetes Debaryomyces_hansenii Debaryomyces_hansenii CR382137 116364..118052 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1689 On_Sep_10,_2008_this_sequence_version_replaced_gi:49654999.This_is_an_updated_version_of_the_complete_genome_sequence._TheDebaryomyces_hansenii_sequence_is_made_of_7_chromosomes_(A_to_G).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 10-SEP-2008 Debaryomyces_hansenii_strain_CBS767_chromosome_E_complete_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Debaryomyces_hansenii_Q6BQY4_DEBHA.gb Wingea 199432393 Nature_430_(6995),_35-44_(2004) fungi CR382137 NA NA budding_yeasts sac_fungi 15229592 1689 E genomic_DNA 4959 CBS767 NA Torulaspora_hansenii NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 4959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Debaryomyces Genome_evolution_in_yeasts NA CR382137.2 ATGGTTTTGAAGATTTGGGATAGAACTAATACGTTTGGTCTCAGGGGCAGATCCCTTAGATTGGCCATTACAGTTACCGCTGTGACAGGTTTCTCCTTGTTCGGTTATGATCAAGGTTTAATGTCTGGTATTATTACTGGTGATGATTTTAGTAAGGAGTTTCCTGCTGTAACAAATGAGGGTGCTGGCTCGGAACATTGGGCTACTGTTAACCAAGGTGGGGTTGTTTCATGTTATGAAATCGGGTGTTTCTTCGGTGCATTATTTGCTTTATTTAGAGGTGATAGATTCGGAAGAAGACCCATGGTGATTATAGGATCATTACTTATTATTCTTGGTACAATTATTTCCACTGCATCATTTGGCGCTCATTGGGGATTGGGTCAATTTATTATTGGTAGAGTTATCACTGGATTAGGTAACGGTATGGATACTGCAACGATTCCGGTTTGGCAATCTGAAGTTTCTAGAGCGGAAAATAGAGGTTTCTTAGTTAACTTAGAAGGATCAGTTGTTGCATTCGGTACATTTATTGCCTATTGGTTAGATTTTGGTTTATCATACGTTGAGGGTGAACATGCATCTGTTCAATGGAGATTTCCCGTTGCGTTCCAAATATTTTTCGCTGCAGTTTTATTTGTAGGTATTATCAATTTACCTGAGTCACCAAGATGGTTAATTGCTCATGGCTATAAAGATGAAGCGAATTATGTATTAGCATCTTTAAATGATGTTGAAATTGATGACGATTTGGTTATTGCTGAAAGTACTGTTATAACTGATGGTGTCAACAGATTTGCAAGATCTCAAGTTGGATTCAAAGAGTTATTTTCTGGTGGTAAGCTGCAGCATTTTTCAAGAATGGTTATTGGTGCATCTACTCAATTCTTTCAACAATTTACTGGATGTAATGCTTCTATCTACTATTCGACTGTTTTATTTGAACGTTTGGGAATGGCTGACACTTATGAAAAGTTACCTTTGGTTATGGGAGGTGTATTTTCTACAGTTTATGCATTAATGACTATTCCATCATTCTTTTTGATTGATAGGTTGGGTAGAAGAGCTTTATTTTTGATCGGTGCTGCCGGCCAAGGTTTGGCATTCACTATCGCATTTGTGAGTTTGATTCCAGAGGATGGTGATAGTGACGGTGGTAAAAAAGCTGCTGCTGTGGGTATTTTCTTGTTTATTGCCTTCTTTGCTTTCACCATTTTGCCATTGCCATGGGTTTACCCACCAGAAATCAATCCTTTGAGAACCAGAACCGTTGCTTCTGCCATTTCTACTTGTACCAATTGGTTAACAAATTTTGCTGTCGTTATGTTCACGCCACTTTTCATGGCAGAAAGTCAGTTTGGTTGTTATTTGTTCTTTGCGCTTTTCAATTACCTTTTCATTCCAATTATTTTCTTTTTCTATCCTGAAACAGCTGGTCGTACTTTGGAAGAAATTGATATCATTTTTGCAAAGGCATATGTTGATAAGAGACAACCATGGAGAGTTGCCGCTACTTTACCTCATTTAAGCTTGCAAGAACAAGAAGACGAAGGAAACAAATTGGGTATCTTTGATGAGTTCGATAAGGAAGGATTTGAACAAAGTGAAAACATTTCCTCTAATTCATCTAACAAATCACCTGAAGATGGTTCAAATGATGAACCTTTAGTTAAGCCTGCTGAAGTTTAA > 415 DEHA2E00726g similar_to_uniprot|Q871C4_Neurospora_crassa_B8G12_Related_to_hexose_transporter_protein DEHA2E00726p CAG87550.2 12 MKIVIIRDIMDTRLNMSDKDISLENSRNDSVKTPKNVYTLADVTPKFEKIWFKYPWLLQLNIFLLGGILAQVTSGYDGSMMNNLQTLPSWRNYFDQPTGSILSTMANGVTIGTLISIPFTWFVCDYFGRRITIMFGCIVVIIGAAIQGGAVNFGMFTAARVLLGIGSCFASAAASPLLAETSYPSQRPVVTALLLASWPFGSFVASVVTWGPYHSSMKYNNWSWRIPSILQCAFPAIELLLAFFGPESPRWLIDKGRSDEAEAFFIKYHAGGDSSSPLVSYEMAEIKAIIEQEKVQKKSKWSEWFRTKQRLRRLFIVLAVPAMAQLCGNALISYYLQIVLTNIGITETNDQLKINIGMTVYGLVWSVGCATFVDKFKRKHTFIGGYILMCITYVVWTILSAINQQGDFENKGLGRGVVAMIYLFSGFYHIVSPVSMTFVMEVCPFHLRAQGATLYQLSGNVIGFFNNYVNNIAMQAITWRYYIVWCIWLVVQMNIVYWIFPETKGLGLEEVAQVFGEDVTAGYKAGDHALEYGIEEVNKDDVSVEHIEEKVDKN Saccharomycetes Debaryomyces_hansenii Debaryomyces_hansenii CR382137 60005..61669 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1665 On_Sep_10,_2008_this_sequence_version_replaced_gi:49654999.This_is_an_updated_version_of_the_complete_genome_sequence._TheDebaryomyces_hansenii_sequence_is_made_of_7_chromosomes_(A_to_G).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 10-SEP-2008 Debaryomyces_hansenii_strain_CBS767_chromosome_E_complete_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Debaryomyces_hansenii_Q6BR10_DEBHA.gb Wingea 199432393 Nature_430_(6995),_35-44_(2004) fungi CR382137 NA NA budding_yeasts sac_fungi 15229592 1665 E genomic_DNA 4959 CBS767 NA Torulaspora_hansenii NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 4959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Debaryomyces Genome_evolution_in_yeasts NA CR382137.2 TTAGTTTTTATCTACTTTCTCTTCAATGTGTTCAACAGACACATCATCTTTGTTTACCTCCTCAATTCCGTATTCAAGTGCATGATCACCAGCCTTGTAGCCGGCGGTTACATCCTCTCCGAATACTTGGGCAACTTCTTCTAAACCCAAACCTTTAGTTTCTGGGAATATCCAGTATACGATGTTCATTTGCACCACTAGCCAGATACACCATACAATATAGTATCTCCAAGTTATAGCCTGCATCGCAATGTTGTTCACATAATTATTAAAGAAACCAATTACATTTCCAGAAAGTTGATAGAGAGTAGCTCCTTGTGCTCTCAAATGGAAAGGGCAAACTTCCATAACGAAAGTCATAGATACAGGAGATACAATATGATAAAACCCCAGGAAAAGATAAATCATAGCAACGACACCTCTTCCTAGACCCTTATTTTCGAAATCACCCTGTTGATTAATTGCAGATAATATAGTCCAAACAACATATGTAATACACATTAGGATATAGCCTCCAATAAAAGTATGCTTACGTTTGAACTTGTCGACAAATGTTGCGCAACCAACAGACCATACTAAACCGTAGACTGTCATTCCAATATTAATTTTAAGTTGGTCATTTGTTTCAGTGATACCAATATTGGTCAAAACTATTTGCAAGTAATATGAAATAAGTGCATTTCCACATAGTTGTGCCATTGCTGGGACTGCCAAAACAATAAACAACCTACGGAGACGTTGTTTTGTCCTGAACCATTCACTCCATTTGCTCTTTTTTTGGACCTTTTCTTGTTCGATAATAGCTTTTATTTCGGCCATTTCATAACTCACTAACGGACTACTCGAATCGCCTCCAGCATGATATTTTATAAAAAAAGCTTCAGCTTCATCACTTCTGCCTTTGTCGATCAACCATCTCGGTGATTCTGGACCAAAAAAAGCAAGTAATAATTCAATTGCAGGGAAAGCACATTGCAAAATAGAGGGTATTCTCCAGGACCAATTATTATACTTCATGCTTGAATGATAAGGGCCCCAAGTAACTACAGAAGCAACAAAAGATCCAAATGGCCATGATGCTAACAACAACGCTGTCACGACAGGCCTCTGAGATGGATACGATGTCTCAGCCAACAAGGGTGAAGCAGCTGCTGATGCAAAACATGAACCAATACCAAGTAGCACTCTCGCGGCCGTGAACATTCCAAAATTCACCGCACCACCTTGAATTGCTGCACCTATAATGACAACAATACAGCCGAACATAATCGTTATCCGTCTACCAAAATAATCACATACAAACCAAGTAAATGGAATCGAAATTAAGGTACCAATTGTAACACCATTAGCCATAGTACTTAAAATGCTTCCCGTTGGTTGATCAAAGTAATTTCTCCAACTTGGAAGCGTCTGCAAATTGTTCATCATACTACCATCATATCCAGAAGTAACCTGAGCCAAAATACCTCCTAAAAGAAAAATATTCAATTGTAACAACCAAGGATATTTAAACCATATTTTTTCAAACTTGGGTGTAACATCTGCTAGAGTATAAACATTTTTAGGTGTCTTCACCGAATCATTCCTCGAGTTTTCTAGAGAAATATCCTTATCACTCATATTCAATCTAGTATCCATAATGTCCCTTATTATCACTATCTTCAT > 416 DEHA2C11374g uniprot|Q64L87_Debaryomyces_hansenii_Xylhp DEHA2C11374p CAG86243.1 12 MTTAVGLEDNSKGNIITVMSKDPLVFCIIAFASIGGLLFGYDQGVISGIVTMESFAAKFPRIFSDPDYKGWFVSTFLLCAWFGSLINSPVVDRFGRRDTIRIACVVFVIGSVFQCAGTSVSMLFAGRAVAGIGVGQLTMVVPIYMSELAPPSVRGGLVVIQQFSITIGILISFWINYGTQFIGGTKCAPDQDYKGDTFDPYIDVPQGGCYGQKDASWRIPFGLQIAPAFILGIGMSFFPRSPRWLLSRKREEEAWEALNYLRRRNNPDMIDAEFNEIKSDVLFEQKYNERKFQGKTGMSFFITSYWDLVSTKSNFKRVFIGSAVMFFQQFIGCNAIIYYAPTIFSQLGMDSNTTALLGTGVYGIVNCLSTIPAIFAIDRFGRKTLLMAGAAGTFVSLVIVGAIVGTYGDTLSKHKTAGRAAIAFIFIYDFNFSYSWAPIGWVLPSEIFSIGIRSKAISITTSSTWMNNFIIGLVTPRMLETMKWGTYIFFAAFAIIAFAFTWFVIPETKGVPLEEMDLVFGDLDALQEKQNFSRMNELSKMDSIKATTDISEAHYSD Saccharomycetes Debaryomyces_hansenii Debaryomyces_hansenii CR382135 995284..996957 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1674 On_Sep_10,_2008_this_sequence_version_replaced_gi:49653352.This_is_an_updated_version_of_the_complete_genome_sequence._TheDebaryomyces_hansenii_sequence_is_made_of_7_chromosomes_(A_to_G).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 10-SEP-2008 Debaryomyces_hansenii_strain_CBS767_chromosome_C_complete_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Debaryomyces_hansenii_Q6BUF0_DEBHA.gb Wingea 199430401 Nature_430_(6995),_35-44_(2004) fungi CR382135 NA NA budding_yeasts sac_fungi 15229592 1674 C genomic_DNA 4959 CBS767 NA Torulaspora_hansenii NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 4959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Debaryomyces Genome_evolution_in_yeasts NA CR382135.2 TTAATCAGAATAATGTGCTTCCGAAATATCTGTTGTAGCTTTAATTGAATCCATTTTTGATAATTCATTCATGCGAGAGAAGTTTTGCTTTTCTTGCAACGCATCTAAATCACCAAAAACTAAATCCATTTCTTCTAAAGGTACTCCTTTAGTTTCTGGGATAACAAACCAAGTGAAAGCAAATGCAATTATAGCAAATGCTGCAAAAAAGATATATGTTCCCCATTTCATTGTCTCCAACATACGGGGGGTGACCAAACCAATTATGAAATTATTCATCCATGTTGATGAAGTAGTAATGGATATAGCTTTTGATCTGATTCCAATAGAGAAGATTTCGGATGGTAAAACCCATCCAATAGGTGCCCAGCTATATGAAAAGTTGAAATCATATATAAAAATAAAAGCTATTGCCGCTCTACCAGCAGTTTTATGCTTAGATAAAGTATCACCATATGTGCCGACAATTGCACCTACTATAACCAACGAAACAAAAGTTCCAGCTGCCCCAGCCATCAATAAAGTTTTTCTACCAAATCTGTCAATCGCAAAGATAGCAGGAATAGTTGAAAGGCAATTAACAATCCCATAGACCCCTGTTCCTAACAATGCTGTGGTGTTGGAATCCATTCCTAATTGACTAAATATTGTTGGTGCGTAATAAATAATTGCATTACAACCAATAAATTGTTGGAAGAACATAACCGCAGAGCCTATAAAAACTCTCTTAAAATTTGATTTGGTAGAGACTAGATCCCAATACGATGTTATAAAGAAAGACATTCCTGTTTTTCCTTGAAATTTCCTCTCGTTATATTTTTGTTCAAATAATACGTCCGATTTAATTTCATTGAATTCAGCATCAATCATATCAGGATTATTTCTTCTCCTCAAATAATTCAAAGCCTCCCATGCCTCCTCTTCTCTTTTTCTTGATAAGAGCCATCTTGGCGATCTTGGAAAAAAAGACATACCAATACCTAAAATGAAAGCTGGTGCAATTTGTAACCCAAATGGAATTCTCCAGGAAGCATCTTTTTGACCGTAACAACCACCTTGAGGAACATCAATGTATGGGTCGAAAGTATCGCCTTTGTAATCTTGGTCAGGAGCACATTTAGTTCCTCCAATAAATTGAGTGCCATAATTTATCCAAAATGATATCAAAATACCTATTGTTATTGAAAATTGCTGTATTACAACTAAACCACCTCTTACTGAAGGTGGAGCTAATTCCGACATATAAATTGGGACTACCATAGTCAATTGTCCGACACCGATACCAGCAACTGCTCTCCCAGCGAAAAGCATACTAACCGACGTACCTGCACATTGAAAGACAGATCCGATAACAAATACAACGCAAGCTATTCTTATAGTATCCCTTCTTCCAAATCGATCAACAACAGGAGAGTTTATCAACGAACCAAACCAAGCACACAACAAAAATGTAGAAACAAACCAACCCTTATAATCAGGATCGGAAAAAATTCTGGGGAATTTTGCCGCAAATGACTCCATAGTAACTATACCACTAATAACTCCCTGATCGTACCCAAAGAGTAAACCCCCAATAGATGCAAACGCAATTATGCAAAACACTAACGGATCTTTACTCATAACAGTAATAATATTCCCTTTGGAATTATCTTCTAATCCAACAGCAGTAGTCAT > 417 DEHA2B05060g similar_to_uniprot|P39932_Saccharomyces_cerevisiae_YDR536w_STL1_glycerol_proton_symporter_of_the_plasma_membrane DEHA2B05060p CAG85177.1 12 MALKIFSRTNTMGLRGKRLRVMFTVVATLGFSLFGYDQGLMSGLITGEQFNAEFPPTAGKDHWASVNQGAVTACYEIGCLFGALFVLFYGDKTGRRILVVCGSLIIIIGTVISTAAFGPQWGLGQFVVGRVVTGVGNGLNTATIPVWQSEMSKAENRGLLVNFEGSVIAVGTFVAYWIDFGLSYVDSSVQWRFPVAFQALFAIFLLFGAIEMPESPRWMFAHDMKAEGMEVLAAMKDISPDDDEIYAEYTFITDSIKRFDNNQAGFKELFKGGKEQYFARMIIGSSGQFFQQFTGCNAAIYYSTVLFEDTIHLERRLALILGGVFATVYALSTIPSFFLVDTLGRRNLFLIGAIGQAISFTITFACLIPEDGENTQDAKGAAVGLFLFIVFFGFTILPMPWIYPPEINPMKTRTVASAVSTCTNWLTNFGVVMFTPIFIAQSTFGCYLFFALMNYTFIPIIFFFYPETAGRSLEEIDIIFAKAHVDNRLPFRVAATMPRLSVKDIEEYNVQLGLDDDFDKEQNELQENASSNSEKSPDDTPEGILTPNA Saccharomycetes Debaryomyces_hansenii Debaryomyces_hansenii CR382134 413829..415478 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1650 On_Sep_10,_2008_this_sequence_version_replaced_gi:49652637.This_is_an_updated_version_of_the_complete_genome_sequence._TheDebaryomyces_hansenii_sequence_is_made_of_7_chromosomes_(A_to_G).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 10-SEP-2008 Debaryomyces_hansenii_strain_CBS767_chromosome_B_complete_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Debaryomyces_hansenii_Q6BX87_DEBHA.gb Wingea 199429535 Nature_430_(6995),_35-44_(2004) fungi CR382134 NA NA budding_yeasts sac_fungi 15229592 1650 B genomic_DNA 4959 CBS767 NA Torulaspora_hansenii NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 4959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Debaryomyces Genome_evolution_in_yeasts NA CR382134.2 ATGGCTTTAAAAATCTTTTCTAGAACCAACACTATGGGGTTAAGGGGTAAACGTCTTAGAGTAATGTTCACTGTGGTGGCTACTCTTGGGTTCTCCTTATTCGGTTACGATCAAGGTTTAATGTCTGGTCTTATTACTGGTGAGCAATTCAATGCTGAATTCCCTCCAACAGCAGGTAAGGATCACTGGGCTTCTGTTAATCAAGGTGCCGTTACCGCCTGTTACGAAATTGGATGTTTGTTTGGTGCTTTATTTGTTTTATTCTATGGTGATAAAACAGGTAGAAGAATTTTAGTTGTTTGCGGTTCTTTGATTATTATTATTGGTACCGTCATTTCTACTGCGGCATTTGGTCCACAATGGGGTTTAGGTCAGTTTGTTGTCGGAAGAGTGGTTACAGGTGTAGGTAATGGTTTGAATACCGCTACAATTCCAGTTTGGCAATCTGAAATGTCTAAAGCCGAAAACAGAGGTCTTTTAGTCAACTTCGAAGGTTCTGTCATTGCAGTGGGTACCTTTGTTGCTTACTGGATCGATTTCGGATTATCTTATGTTGATAGTTCTGTCCAATGGAGATTCCCAGTTGCTTTCCAAGCATTATTTGCAATCTTCTTGTTATTTGGAGCTATTGAAATGCCAGAATCTCCAAGATGGATGTTCGCTCACGATATGAAAGCTGAAGGTATGGAAGTTTTAGCTGCAATGAAAGATATTTCTCCAGATGATGATGAAATCTACGCAGAATATACGTTCATTACTGACTCGATTAAGAGATTCGATAATAACCAAGCCGGATTCAAGGAATTATTCAAAGGTGGTAAAGAGCAATACTTTGCTAGAATGATAATTGGTTCATCTGGTCAATTTTTCCAACAATTTACTGGTTGTAATGCGGCAATTTATTATTCTACCGTGTTATTTGAAGATACTATTCATTTAGAAAGAAGATTGGCTTTGATTTTAGGTGGTGTTTTTGCAACCGTCTATGCCTTATCCACAATTCCTTCGTTCTTCTTGGTTGATACACTTGGTAGAAGAAACTTATTCTTAATTGGTGCAATTGGTCAAGCTATCTCATTTACAATTACATTTGCCTGTTTGATTCCAGAAGATGGAGAAAACACTCAAGATGCCAAAGGTGCTGCTGTTGGTCTTTTCTTGTTTATTGTCTTTTTCGGTTTTACTATCTTACCAATGCCTTGGATTTATCCACCAGAAATCAATCCAATGAAGACAAGAACCGTAGCTTCAGCTGTTTCCACCTGTACTAACTGGTTAACTAATTTCGGGGTTGTTATGTTCACCCCAATTTTCATTGCACAAAGTACCTTTGGATGTTATTTATTCTTTGCGCTTATGAATTATACTTTCATTCCAATTATTTTCTTCTTTTATCCAGAAACTGCCGGTCGTTCCTTAGAAGAGATTGATATCATTTTCGCCAAAGCACATGTTGACAATAGATTACCATTCAGAGTTGCAGCTACTATGCCACGTTTATCTGTCAAAGATATTGAAGAATACAATGTTCAATTAGGTCTTGATGATGACTTCGATAAGGAACAGAATGAATTGCAAGAGAATGCCTCCTCCAATTCAGAAAAATCACCTGATGACACTCCAGAAGGTATCTTAACTCCTAATGCTTAA > 418 DEHA2A12364g similar_to_uniprot|P39932_Saccharomyces_cerevisiae_YDR536W_STL1_Glycerol_proton_symporter_of_the_plasma_membrane DEHA2A12364p CAG84843.1 12 MSTVSPEKSISSKIQPLDSKNEKHYVQDHIIQIEDSKTYTYLGFKGQTLHNMISFLAGMGFLLFGYDQGVMGSLLTLPAFRNTFESIDTIKYPEHATFQGFVIAVYEIGCLAGAVSTMYLGDMLGRRKTILIGCCIMIVGAVIQCSSFSVGQLIAGRIITGIGNGMNTSTVPIWQSECAKSEKRGKLVMIQGALITGGICISYWIDFGFFFIKNSSVSWRFPIGFQIFFPLFILPLIMYLPESPRWLLKAGKLDEAAKVFSALDDIPVNDPTIVYEVREIENSLQKERHEGEQKSNLLLLFAQGDTKNFHRTCLAVWSQIMQQITGINLITYYAGTVFEKYIGLNPLNARILAACNGTEYFMVSWVAFYTIERVGRRKLMLFGAAGQAMSMAVLTGATWAASPEHNDSGAAAIVAAVFLFVFNSFFAIGWLGMTWLYPAEITPLNIRAASNGLSTAANWSFNFMVVMITPVAFESIDSYTYTIFAVINLLMIPVVYFFYPETAGRSLEEMDNVFELSNPYTPWDVVKIARELPYESQTRDRDIEKVNIQHIG Saccharomycetes Debaryomyces_hansenii Debaryomyces_hansenii CR382133 1045762..1047420 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1659 On_Sep_10,_2008_this_sequence_version_replaced_gi:49651994.This_is_an_updated_version_of_the_complete_genome_sequence._TheDebaryomyces_hansenii_sequence_is_made_of_7_chromosomes_(A_to_G).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 10-SEP-2008 Debaryomyces_hansenii_strain_CBS767_chromosome_A_complete_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Debaryomyces_hansenii_Q6BY51_DEBHA.gb Wingea 199428773 Nature_430_(6995),_35-44_(2004) fungi CR382133 NA NA budding_yeasts sac_fungi 15229592 1659 A genomic_DNA 4959 CBS767 NA Torulaspora_hansenii NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 4959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Debaryomyces Genome_evolution_in_yeasts NA CR382133.2 TCATCCGATATGCTGAATATTAACCTTTTCAATATCACGATCACGAGTTTGGCTCTCGTAAGGTAGCTCTCTAGCGATTTTTACAACATCCCAAGGAGTGTAAGGATTGGATAGTTCGAAGACGTTATCCATTTCCTCTAACGACCTACCAGCTGTTTCTGGATAGAAGAAATAAACGACTGGAATCATTAAGAGATTGATTACTGCGAAAATAGTATAAGTGTAGGAATCAATACTTTCGAAAGCAACTGGGGTGATCATAACTACCATAAAATTGAAAGACCAATTTGCAGCTGTACTTAACCCATTAGAAGCAGCTCTGATGTTTAATGGGGTAATTTCAGCTGGGTATAACCAGGTCATTCCTAACCAACCGATAGCGAAGAAACTGTTGAAAACGAATAAGAAGACAGCAGCAACAATAGCTGCAGCACCACTGTCATTGTGTTCTGGACTAGCAGCCCAGGTGGCACCGGTCAAGACAGCCATAGACATAGCTTGACCAGCAGCCCCAAATAACATCAATTTTCTTCTGCCAACTCTTTCAATCGTGTAGAATGCAACCCAAGAAACCATGAAATATTCAGTACCGTTACAGGCGGCTAGGATTCTCGCGTTCAAAGGATTTAAACCAATATATTTTTCGAATACAGTACCCGCATAGTAGGTGATTAAATTAATACCAGTAATTTGTTGCATAATTTGCGACCAGACGGCCAAGCAAGTTCTGTGGAAATTCTTGGTATCACCCTGAGCAAATAAAAGAAGAAGGTTGGATTTTTGTTCACCTTCATGTCTTTCCTTTTGTAAAGAGTTTTCAATTTCTCGAACTTCGTAGACAATAGTAGGATCATTAACTGGGATGTCATCAAGAGCAGAGAAAACTTTAGCAGCTTCATCCAATTTACCGGCTTTTAGTAACCATCTAGGAGATTCAGGTAAGTACATGATGAGGGGCAAGATGAATAGTGGGAAAAATATTTGGAACCCAATTGGGAATCTCCATGATACAGAACTATTTTTGATGAAGAAGAAGCCAAAATCGATCCAGTAGGAAATACAAATTCCACCAGTGATTAAGGCACCTTGAATCATAACTAATTTACCTCTCTTTTCTGACTTAGCACACTCAGATTGCCATATTGGAACGGTGGAAGTGTTCATACCGTTACCAATACCGGTGATAATTCTTCCGGCAATTAACTGACCAACGGAGAACGAGGAACACTGGATGACAGCACCAACAATCATAATACAACATCCAATGAGAATAGTTTTTCTTCTTCCAAGCATATCACCCAAGTACATAGTGGAAACGGCACCCGCTAAACAACCAATTTCATAAACGGCAATAACAAAACCCTGGAAAGTGGCGTGCTCTGGGTATTTAATTGTGTCTATAGATTCAAATGTGTTCCTAAAAGCTGGCAAAGTCAACAACGAGCCCATGACACCCTGGTCGTAACCGAAAAGTAAGAACCCCATACCAGCGAGAAATGAAATCATGTTATGCAATGTCTGACCTTTGAAACCCAAATACGTATAGGTTTTGGAGTCTTCAATTTGGATGATGTGATCTTGAACATAGTGCTTCTCATTTTTTGAGTCAAGAGGTTGTATCTTAGACGATATAGATTTTTCCGGTGAAACTGTCGACAT > 419 HMPREF0321_1321 this_gene_contains_a_nucleotide_ambiguity_which_may_be_the_result_of_a_sequencing_error;_identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family_protein EFP57630.1 11 MAAIPVDAPRALDAHRPLSKTSLAVAGSSTVIEWYDFTLYLYLTTVISRVFFGGGTSGTAWTLLVFAGTYLMRPVGAAFFGHVGDRIGRKPVLLISMALMTLAMLATACLPTYASIGPMAGYLMIALRALMAFSVGGEYSGVMTYLVEGSEPHRRGFVTSLASAASEIGGLLAVGLSAITTSYFVGDDLDSWGWRVPFFIGAAMAATTLFMRSRMEESPVFEEESEADKSMNPLVEVLKTEPAAVWRGFAISALGSITYYVGIGYAPTFLQSAGKFSESDALWLGTAAAIAVILVTPLAGLAADRFGRRPILLIFGVLAAVTSLTMFQLMANGSTGAALAGALVLAAVAGGWSAVAASAIAEQFKSKARMSGMALGFTALHE high_GC_Gram+ Dermacoccus_sp._Ellin185 Dermacoccus_sp._Ellin185 AEIQ01000088 223690..224838 Durkin,A.S.,_Madupu,R.,_Torralba,M.,_Gillis,M.,_Methe,B.,_Sutton,G._and_Nelson,K.E. NA 0:1149 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_CLC_v._3.10.47055Genome_Coverage_::_194xSequencing_Technology_::_Illumina;_454##Genome-Assembly-Data-END## NA 13-OCT-2010 Dermacoccus_sp._Ellin185_contig_469,_whole_genome_shotgun_sequence. NA Dermacoccaceae_Schumann_and_Stackebrandt_2000_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Dermacoccus_sp_E3BBY1_9MICO.gb Dermatococcus 308433564 Submitted_(05-OCT-2010)_The_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA AEIQ01000088 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1149 NA genomic_DNA NA Ellin185 NA Dermacoccus_sp._Ellin185 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Micrococcineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 188626 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Micrococcineae,_Dermacoccaceae,_Dermacoccus Direct_Submission NA AEIQ01000088.1 ATGGCAGCCATCCCCGTCGACGCGCCACGCGCCCTCGACGCCCATCGCCCGCTGAGCAAGACGTCGCTCGCCGTCGCGGGGTCGTCGACCGTCATCGAGTGGTACGACTTCACGCTGTACCTGTACCTGACGACGGTCATCTCGCGCGTCTTCTTCGGCGGCGGCACGAGCGGTACCGCATGGACGCTGCTGGTCTTCGCCGGCACCTACCTGATGCGCCCCGTCGGCGCCGCGTTCTTCGGCCATGTCGGCGACCGCATCGGGCGCAAGCCCGTCCTTCTCATCTCCATGGCCCTCATGACGTTGGCGATGCTCGCGACGGCCTGCCTGCCGACGTACGCCTCCATCGGGCCAATGGCGGGTTACCTGATGATCGCGCTGCGCGCCCTCATGGCGTTCAGCGTCGGCGGCGAGTACTCGGGCGTCATGACGTACCTCGTCGAGGGCTCCGAACCGCACCGCCGCGGCTTCGTCACGTCGCTGGCCTCCGCGGCGAGCGAGATCGGTGGCCTGCTGGCGGTCGGCCTCTCGGCGATTACGACGTCGTACTTCGTCGGTGACGACCTCGATTCCTGGGGCTGGCGCGTGCCGTTCTTCATCGGCGCGGCGATGGCTGCGACGACCCTGTTCATGCGCTCACGCATGGAGGAGTCGCCCGTGTTCGAAGAGGAATCCGAGGCGGACAAGTCGATGAACCCGCTCGTCGAGGTGCTCAAGACCGAGCCCGCCGCGGTGTGGCGTGGTTTCGCCATCTCGGCGCTCGGGTCGATCACGTACTACGTCGGCATCGGCTACGCGCCGACGTTCCTGCAGTCCGCAGGCAAGTTCAGCGAGTCCGACGCCCTGTGGCTCGGTACCGCGGCGGCGATCGCCGTCATCCTCGTGACGCCGCTGGCGGGCCTCGCCGCCGACCGCTTCGGCCGCCGTCCCATCCTGCTCATCTTCGGGGTGCTCGCGGCCGTGACGTCGCTGACGATGTTCCAGCTCATGGCGAACGGCTCGACGGGCGCGGCGCTCGCGGGCGCCCTCGTGCTCGCCGCCGTCGCGGGCGGGTGGAGCGCCGTGGCCGCGTCGGCCATCGCGGAGCAGTTCAAGTCGAAGGCCCGCATGTCGGGCATGGCGCTCGGATTCACGGCTCTTCACGAATGA > 420 HMPREF0321_2239 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family_protein EFP56725.1 11 MTVRPTPLSAPASRTERLDRLPFTARHRSMLVGSGVGWALDAMDVGLISFLMVAVKKEWGLTTGDLSVLASIGFVGMAIGAGVGGALADRIGRRTVFAGTLVVYGIATGLSALAPSFLVLCALRFVVGLGLGAELPVASTLVSEFAPKRLRGRMVVALESFWALGWLLAAVIGFTIVPHDNGWRWAMALGLVPALYAIHVRRGLPESVRFLEKVGRDDDAERIVRSFEAAAGPAQRSDGAHLDDAADTHAGAQGTAVDVETTRTSEPASPFSAPYRTRTAALWATWFGVNFAYYGAFLWIPTFLVANGFPVAKSFGFTLVITIAQLPGYAVAAVCVEKIGRRPTLAIFLAGSTVSALLFGQASSETAIMAAGCALSFFNLGAWGALYAITPEIYPTLMRAGGAGGATAFGRIASIVAPLVVPWVFTHHGEGWTFGVIAAAFAVATLAALALPERRGQALD high_GC_Gram+ Dermacoccus_sp._Ellin185 Dermacoccus_sp._Ellin185 AEIQ01000122 44445..45827 Durkin,A.S.,_Madupu,R.,_Torralba,M.,_Gillis,M.,_Methe,B.,_Sutton,G._and_Nelson,K.E. NA 0:1383 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_CLC_v._3.10.47055Genome_Coverage_::_194xSequencing_Technology_::_Illumina;_454##Genome-Assembly-Data-END## NA 13-OCT-2010 Dermacoccus_sp._Ellin185_contig_490,_whole_genome_shotgun_sequence. NA Dermacoccaceae_Schumann_and_Stackebrandt_2000_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Dermacoccus_sp_E3BE15_9MICO.gb Dermatococcus 308432790 Submitted_(05-OCT-2010)_The_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA AEIQ01000122 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1383 NA genomic_DNA NA Ellin185 NA Dermacoccus_sp._Ellin185 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Micrococcineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 188626 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Micrococcineae,_Dermacoccaceae,_Dermacoccus Direct_Submission NA AEIQ01000122.1 TCAGTCGAGCGCCTGCCCCCGACGTTCGGGCAGCGCGAGCGCGGCAAGCGTCGCGACCGCGAAGGCTGCGGCGATGACACCGAACGTCCAGCCCTCGCCGTGATGGGTGAACACCCAAGGCACGACGAGCGGCGCCACGATCGAGGCGATGCGCCCGAACGCCGTCGCGCCGCCGGCGCCGCCCGCGCGCATGAGCGTCGGGTAGATCTCGGGCGTGATGGCGTACAGCGCACCCCACGCGCCGAGGTTGAAGAAGCTGAGTGCGCACCCGGCGGCCATGATCGCCGTCTCCGACGAGGCCTGACCGAACAGCAGCGCCGACACCGTCGAACCTGCGAGGAAGATCGCGAGCGTCGGTCGGCGTCCGATCTTCTCCACGCACACCGCAGCCACCGCGTATCCGGGCAACTGTGCGATCGTGATGACGAGGGTGAAACCGAACGACTTCGCCACCGGAAAGCCGTTCGCGACGAGGAATGTCGGGATCCACAAGAAGGCCCCGTAATAGGCGAAGTTGACGCCGAACCACGTCGCCCACAGAGCGGCAGTCCGCGTTCGATACGGCGCCGAGAACGGGCTCGCCGGCTCTGACGTTCTGGTCGTCTCGACGTCGACGGCGGTTCCCTGCGCGCCCGCGTGGGTGTCGGCAGCGTCGTCGAGGTGCGCGCCGTCGCTGCGCTGCGCCGGACCCGCCGCGGCCTCGAACGAGCGCACGATGCGTTCGGCGTCGTCGTCGCGGCCGACCTTCTCGAGGAAGCGCACCGACTCGGGCAACCCGCGGCGCACGTGAATTGCGTAGAGAGCGGGCACGAGCCCGAGCGCCATCGCCCAGCGCCACCCGTTGTCGTGCGGCACGATCGTGAATCCGATGACGGCCGCGAGCAGCCACCCGAGCGCCCAGAACGACTCGAGGGCGACGACCATCCGTCCTCGCAGGCGCTTCGGGGCGAACTCGCTCACCAGGGTCGAGGCCACCGGGAGTTCCGCGCCGAGGCCGAGCCCGACGACGAAGCGCAGGGCGCACAGGACGAGGAAGCTCGGCGCGAGCGCCGACAGACCCGTCGCGATGCCGTAGACGACGAGTGTGCCCGCGAACACGGTGCGGCGGCCGATGCGGTCGGCCAGGGCGCCGCCGACACCGGCGCCGATCGCCATGCCGACGAAGCCGATCGAGGCGAGCACCGACAGGTCGCCGGTCGTCAGCCCCCACTCCTTCTTGACCGCCACCATGAGAAAGCTGATGAGCCCGACGTCCATCGCGTCGAGCGCCCAGCCGACGCCCGAACCGACGAGCATCGAGCGATGACGCGCCGTGAACGGCAACCGATCGAGCCGCTCGGTTCGACTCGCGGGAGCCGAGAGTGGGGTGGGACGGACCGTCAT > 421 Dalk_4467 PFAM:_major_facilitator_superfamily_MFS_1;_KEGG:_gsu:GSU2744_major_facilitator_family_transporter major_facilitator_superfamily_protein YP_002433614.1 11 MRSKLPKTVFILGLVSFFNDLSSEMIYPLLPLFLSSTLGAGAVALGVVEGVAESASSILKAVSGIAADRWNKRKPLILSGYGLSGLVRPLIGLAWAWPLVLAARFFDRVGKGLRTSPRDALISMSVKPEMRGRAYGFHRAMDHSGAVAGPLAAAFLLSVLGLGLRHVFLLAAIPAMVVIALIVFGVKDPKDQQPEEDACAPPFSKHDWKRLGPDYRRLLTAVVIFTLGNSTDAFILLKLSAAGVSGAWIAGLWSLHHVVKSIATYWGGLFSDHLGRRRMILVGWLFYAAVYFCFAFASSPGWIVALFLLYGVYYGLTEPCEKAWVADMAPKELCGAAFGFYHAAVGFAALPASLIFGVIWHAWGMAAAFLTGALLAAAASILLPREPRS delta_subgroup Desulfatibacillum_alkenivorans_AK-01 Desulfatibacillum_alkenivorans_AK-01 NC_011768 5587741..5588910 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ovchinnikova,G.,_Wawrik,B._and_Richardson,P. NA 0:1170 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001322.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4003083Source_DNA_and_bacteria_available_from_Boris_Wawrik(bwawrik@yahoo.com)Contacts:_Boris_Wawrik_(bwawrik@yahoo.com)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 26-JAN-2012 Desulfatibacillum_alkenivorans_AK-01_chromosome,_complete_genome. NA Desulfobacteraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Desulfatibacillum_alkenivorans_B8FCI3_DESAA.gb Desulfobacillum 218777860 Unpublished NA NC_011768 NA NA Desulfobacterales purple_photosynthetic_bacteria_and_relatives NA 1170 NA genomic_DNA NA AK-01 NA Desulfatibacillum_alkenivorans_Cravo-Laureau_et_al._2004 NA forward NA NA NA NA NA not_Thiobacteria_Cavalier-Smith_2002 NA NA NA NA prokaryotes NA 439235 Bacteria,_Proteobacteria,_Deltaproteobacteria,_Desulfobacterales,_Desulfobacteraceae,_Desulfatibacillum Complete_sequence_of_Desulfatibacillum_alkenivorans_AK-01 NA NC_011768.1 ATGAGGAGTAAACTGCCAAAAACCGTATTTATTCTGGGCCTGGTCAGCTTTTTCAACGACCTGTCCAGCGAAATGATTTATCCTTTGCTGCCCCTTTTCCTGTCCTCAACTTTGGGGGCGGGCGCCGTGGCTTTGGGCGTGGTGGAGGGAGTCGCCGAGTCGGCCTCGTCCATTTTAAAGGCAGTCTCGGGAATAGCCGCGGATCGCTGGAACAAAAGGAAACCCCTGATTCTCAGCGGATACGGACTGTCCGGCTTGGTAAGGCCCCTTATCGGCCTTGCCTGGGCCTGGCCTTTGGTTTTGGCCGCCCGGTTTTTCGACAGGGTGGGAAAAGGCCTGCGAACCTCTCCACGGGACGCTCTCATCAGCATGAGCGTCAAACCGGAAATGCGGGGACGCGCTTACGGCTTTCATCGGGCCATGGATCACTCCGGGGCTGTTGCGGGGCCGCTGGCGGCGGCCTTTTTACTCTCGGTCTTGGGGCTTGGATTGCGCCATGTTTTTTTGCTGGCGGCTATCCCGGCCATGGTGGTCATTGCGCTAATCGTTTTTGGCGTAAAGGATCCGAAAGATCAACAGCCAGAAGAGGACGCCTGCGCTCCTCCTTTTTCCAAGCATGACTGGAAAAGGCTGGGGCCTGATTACAGGCGGCTGCTTACAGCGGTTGTTATTTTCACCTTAGGAAACTCAACGGACGCCTTCATATTGCTTAAGCTCTCCGCGGCCGGCGTTTCCGGCGCCTGGATAGCCGGCTTGTGGTCCCTGCATCATGTGGTTAAATCCATTGCAACCTATTGGGGCGGCCTTTTTTCCGACCATTTGGGCAGGCGGCGCATGATCCTGGTCGGCTGGCTTTTTTACGCGGCGGTATATTTTTGCTTCGCCTTTGCAAGCAGCCCGGGGTGGATTGTGGCTTTGTTCCTGCTCTATGGAGTATATTACGGGCTTACCGAGCCCTGTGAAAAAGCCTGGGTGGCGGACATGGCGCCCAAGGAGCTTTGCGGCGCCGCCTTCGGCTTTTACCACGCCGCCGTAGGCTTTGCGGCTTTGCCGGCCAGCCTGATTTTCGGCGTGATCTGGCATGCATGGGGAATGGCCGCAGCTTTTTTGACCGGGGCCCTTCTGGCCGCAGCCGCCTCCATTTTGCTGCCGCGGGAACCGCGTTCATGA > 422 Dhaf_1483 PFAM:_general_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_abc:ACICU_00213_major_facilitator_superfamily_permease hypothetical_protein YP_002457971.1 11 MNSFDKKIQTRLRMHPEMLRHILTEPNEETLTTLTRYKLFESKGAYLGQLLLSLLPQWEYLACEGNAHLGQIIRNLEKTPISPVSQESDFLRANLLRIRILAETPGVFPFSPFIIQEHLLNFLEGADLIADLPQLTVINFSRDELRPLASELAQYRLSPLSRRYVQNLFHQERQEAILANLAYLCKNYPLLGTCRQAYALLLSLDNIENWSKHPFCLRLVSNRFWDYRTKEIL Clostridia_Rainey_2010 Desulfitobacterium_hafniense_DCB-2 Desulfitobacterium_hafniense_DCB-2 NC_011830 1578078..1579433 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Kuske,C.R.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ovchinnikova,G.,_Madsen,T.,_Christiansen,N.,_Ahring,B.,_Marsh,T.,_Harzman,C.,_Davis,J.K.,_Kim,S.-H._and_Tiedje,J.M. NA 1350:>1356 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001336.URL_--_http://www.jgi.doe.govJGI_Project_ID:_2352519/4083484Source_DNA_and_bacteria_available_from_James_Tiedje(tiedjej@msu.edu)Contacts:_James_Tiedje_(tiedjej@msu.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 21-JAN-2012 Desulfitobacterium_hafniense_DCB-2_chromosome,_complete_genome. NA Peptococcaceae_Rogosa_1971 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Desulfitobacterium_hafniense_B8FP09_DESHD.gb Desulfitobacterium_Utkin_et_al._1994 219666071 Unpublished NA NC_011830 NA NA Clostridiales_Prevot_1953 low_GC_Gram+ NA 1356 NA genomic_DNA NA DCB-2 NA anaerobic_eubacterium_PCP-1 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 272564 Bacteria,_Firmicutes,_Clostridia,_Clostridiales,_Peptococcaceae,_Desulfitobacterium Complete_sequence_of_Desulfitobacterium_hafniense_DCB-2 NA NC_011830.1 ATGAGTATATCACAACGAATAGAAAAATTACCGGTTAAGAGATTTCACTATATACTCCTTATCTCTGCAGGTTTGGGATGGATGTTCGATTCCATGGATACGGGCATTATTTCCTTTGTCCTGCCGGTGTTGATGAAGACTTGGGGGTTAACACCGGAACAGGTGGGAAATATCGGGAGTGTCGGCCTGTTAGGAATGGCTTTGGGAGCTATTCTGTCCGGGAGTGTGGCGGATCGAATCGGCAGAAAAAAGGTCTTTGCCTTTACCTTGGTGGTGTATTCTTTGGCTACCGGATTATGCGGCCTGGCCTGGAGCTATGCCTCCCTTTTGTTCTTTCGCTTTCTGGTGGGGTTTGGTTTGGGAGGGCAATTGCCGGTTGCGGTAACCTTGGTGAGTGAGTTCACTCCTGCTAAACACCGGGGAAAATTTCTGGTCCTTTTGGAGAGCTTCTGGGCTATAGGGTGGCTCCTGGCCTCCGTTATATCCTATCTGATCATTCCCAACTATGGTTGGCATATTGCTTTCTTCATTGGTGCCATTCCGGCTCTTTACGTTTTTTATCTCTGGAAGTACATCCCGGAGTCACCGCGGTTTCTTGAGGAACAGGGAAGAATCCAGGAGGCTGAGGCAGTGTACCGCCTGGTCGCCGGGGAGGCAGGACCTGACGTAAAGGCGGGCAGAACTGCTGAGGAGGCAAAACGTGAACACAGGCAGCCCCAGAAGGGGACGGCCAAGACTAAGGTGCTGAAGCGAGTCACGGTAGCGGAATTGTTTTCCCGGAAGTTCCTGCGCAGAACGGTGTTTCTCTGGCTGCTTTGGTTTGGAATCGTATATTCTTACTATGGAATTTTTACCTGGCTGCCCTCTATTCTTGCCTTAAAGGGTTTTTCCCTGACCAAGAGCTTCAGCTATGTTATTATTATGACCTTGGCGCAGATTCCCGGCTATTTCAGCGCGGCATTTCTGGTCGATCGCATTGGGCGCAAGCCTACCTTGGCCGCTTTCGTTTTAGGGACAGCGATCAGCGCTTATTTCTTTGGACTGGGCAACAGTGTAATGATGATTCTGGTCTTTGGTTCCCTCATGTCTTTCTTTAACCTTGGCGCCTGGGGAATTCTCTACACCTATACTCCTGAGCTTTATCCTACCAGAGCCCGGGGCACCGGTGCCGGTTGGGCCGCCGGGTTTGGCCGCATCGGCGGCATCTTAGCACCTATGGTGGTAGGCCGTATGCTGGGAGCGGAAATGCCTACGGAAACGGTTTTCCTGATGTTTGCCGGAGTGCTCATCCTCGTTGTGTTTAATGTCCTCATTCTTGGCGAAGAGACGAAAGGCCGGCCCATGGATGAACTATAG > 423 Dd586_1315 TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_General_substrate_transporter;_Osmosensory_transporter_coiled_coil;_KEGG:_dze:Dd1591_2780_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS) metabolite/H+_symporter,_major_facilitator_superfamily_(MFS) YP_003332902.1 11 MKLKRKRVKPIALDDVTIIDDSRLRKAITAAALGNAMEWFDFGVYGFVAYALGQVFFPGADPGVQMIAALATFSVPFLIRPLGGVFFGALGDKYGRQKILAITIIIMSISTFCIGLIPSYERIGIWAPILLLLAKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTLIGEQAFLEWGWRLPFFLALPLGIIGLYLRHALEETPAFQQHVNKLEQDSRDGLTSGPGTSFRDIATHHWKSLLVCIGLVIATNVTYYMLLTYMPSYLSHSLHYSENHGVLIIVAIMIGMLFVQPMMGLLSDRFGRKPFVIIGSIALFVLAIPSFMLINSHMIGLIFAGLLLLAVILNAFTGVMASTLPALFPTPIRYSALASAFNISVLIAGLTPTLTAWLVEISHNLYMPAYYLMVIAVIGLLTGLFMKETANKPLKGATPAASDLSEAKAILREHHDSIEQKIDELARQIAELEEKRNLLIAQHPRING gamma_subgroup Dickeya_dadantii_Ech586 Dickeya_dadantii_Ech586 NC_013592 1470637..1472142 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Munk,A.C.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Balakrishnan,V.,_Glasner,J._and_Perna,N.T. NA 0:1506 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001836.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4085704Source_DNA_and_bacteria_available_from_Nicole_T._Perna(ntperna@wisc.edu)Contacts:_Nicole_T._Perna_(ntperna@wisc.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Dickeya_dadantii_Ech586GOLD_Stamp_ID_::_Gi04044Oxygen_Requirement_::_FacultativeCell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileGram_Staining_::_gram-Biotic_Relationship_::_Free_livingDiseases_::_Soft_rot##Metadata-END##COMPLETENESS:_full_length. NA 25-JAN-2012 Dickeya_dadantii_Ech586_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Dickeya_dadantii_D2BW27_DICD5.gb Dickeya_Samson_et_al._2005 271498578 Unpublished NA NC_013592 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1506 NA genomic_DNA NA Ech586 NA Dickeya_sp._CFBP_3855 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 590409 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Dickeya Complete_sequence_of_Dickeya_dadantii_Ech586 NA NC_013592.1 CTAGCCATTAATCCGCGGATGCTGTGCTATCAGCAGGTTGCGTTTCTCTTCCAGCTCGGCGATCTGTCGGGCGAGCTCGTCAATTTTCTGTTCAATACTGTCGTGATGCTCTCGCAGAATCGCTTTGGCTTCTGACAGGTCGGATGCGGCCGGGGTGGCACCTTTCAGCGGTTTGTTGGCCGTTTCTTTCATAAACAGGCCGGTCAACAGGCCGATGACGGCGATAACCATCAGGTAATACGCAGGCATATACAGGTTATGGCTGATCTCGACCAGCCAGGCGGTGAGGGTCGGTGTCAGACCGGCTATCAAGACCGAAATGTTAAAGGCGCTGGCCAGTGCGCTGTAACGAATCGGGGTGGGAAACAAGGCCGGTAGGGTTGATGCCATCACCCCGGTAAACGCGTTCAGGATCACCGCCAGTAGGAGCAGACCGGCGAAAATCAGGCCGATCATGTGGCTGTTGATCAACATAAAGCTCGGTATCGCCAGCACAAACAGGGCGATGCTACCGATAATCACAAACGGCTTGCGGCCGAAGCGGTCGCTAAGCAGCCCCATCATCGGTTGTACGAACAGCATGCCGATCATAATCGCGACGATGATCAGCACGCCGTGGTTTTCTGAATAATGCAGGCTGTGTGACAGATAGCTGGGCATGTAGGTCAGCAGCATGTAATAGGTCACATTGGTGGCTATCACCAGCCCAATACACACCAGCAGGCTTTTCCAGTGATGGGTCGCAATATCCCGAAACGAGGTTCCCGGCCCGCTGGTTAGCCCATCGCGGCTGTCTTGCTCCAGTTTGTTGACATGTTGCTGAAAAGCCGGGGTTTCTTCCAGTGCATGACGCAGATACAGGCCGATGATGCCGAGCGGCAGCGCCAGGAAGAACGGCAAACGCCAACCCCATTCCAGAAACGCCTGTTCGCCGATAAGTGTAGAAATCAGCACCACGACGCCAGCACCCAGCACGAACCCGGCGATAGAACCGAAATCCAGCCAGCTTCCCATAAAACCGCGCTTGCGATCGGGTGAATACTCCGCCACGAAAATTGACGCGCCGGTATATTCGCCGCCGACGGAGAACCCCTGCGCCATTTTAGCCAGCAGCAGCAGGATAGGGGCCCAGATACCGATGCGTTCATACGAGGGAATCAGCCCGATACAAAAGGTACTGATCGACATGATGATGATGGTGATAGCGAGGATTTTCTGGCGGCCGTACTTGTCCCCTAATGCGCCGAAAAACACGCCACCCAGTGGACGGATCAGAAACGGTACCGAGAAGGTCGCGAGTGCGGCGATCATCTGTACACCGGGGTCGGCACCGGGGAAAAACACCTGGCCCAGTGCATAGGCAACGAAGCCGTAGACGCCAAAATCGAACCATTCCATGGCGTTGCCGAGTGCGGCGGCGGTGATGGCTTTACGCAGACGACTGTCATCAATAATGGTGACATCGTCCAGCGCAATGGGTTTTACACGTTTTCTCTTCAATTTCAT > 424 Dda3937_01458 NA hypothetical_protein YP_003881735.1 11 METWKLNLLSAWLGCFFTGMAMSQILPFLPLYIEHLGVSDHTALNLWSGLVFSSSFLISAIVAPLWGSLADRKGRKLMLLRAALGMSIVMALQGMATNVWQLFILRALMGLTSGYIPNAMALIASQVPRSRSGWALGTLSTGQVAGVLIGPLLGGFMADTIGLRMVFFVTSAMLFICFLITLFAIRENAVTVSKKAQLSGRAVFASLPYPLLIVSLCFTTMMIQMANGSISPILTLFIRDLSPNIDNIAFISGVIAAVPGVSALLSAPRLGRLGDRIGSQRVLIVALFLCALLFFLMSAVQSSVQLGILRFALGFADGALMPAVQALLVKYSSQQVTGRIFGYNQSCMYLGNVVGPLLGSTVSATLGYRWVFLVTALLVLINGVQLMVSFARMPKKG gamma_subgroup Dickeya_dadantii_3937 Dickeya_dadantii_3937 NC_014500 1022375..1023568 Glasner,J.D.,_Yang,C.H.,_Reverchon,S.,_Hugouvieux-Cotte-Pattat,N.,_Condemine,G.,_Bohin,J.P.,_Van_Gijsegem,F.,_Yang,S.,_Franza,T.,_Expert,D.,_Plunkett,G._III,_San_Francisco,M.J.,_Charkowski,A.O.,_Py,B.,_Bell,K.,_Rauscher,L.,_Rodriguez-Palenzuela,P.,_Toussaint,A.,_Holeva,M.C.,_He,S.Y.,_Douet,V.,_Boccara,M.,_Blanco,C.,_Toth,I.,_Anderson,B.D.,_Biehl,B.S.,_Mau,B.,_Flynn,S.M.,_Barras,F.,_Lindeberg,M.,_Birch,P.R.,_Tsuyumu,S.,_Shi,X.,_Hibbing,M.,_Yap,M.N.,_Carpentier,M.,_Dassa,E.,_Umehara,M.,_Kim,J.F.,_Rusch,M.,_Soni,P.,_Mayhew,G.F.,_Fouts,D.E.,_Gill,S.R.,_Blattner,F.R.,_Keen,N.T._and_Perna,N.T. NA 0:1194 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002038.Source_DNA_and_bacteria_strain_is_available_from_Jeremy_Glasner,jglasner@wisc.edu.COMPLETENESS:_full_length. NA 20-JAN-2012 Dickeya_dadantii_3937_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Dickeya_dadantii_E0SB80_DICD3.gb Dickeya_Samson_et_al._2005 307128764 J._Bacteriol._193_(8),_2076-2077_(2011) NA NC_014500 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21217001 1194 NA genomic_DNA NA 3937 NA Dickeya_sp._CFBP_3855 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 198628 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Dickeya Genome_Sequence_of_the_Plant-Pathogenic_Bacterium_Dickeya_dadantii_3937 NA NC_014500.1 TCAGCCTTTTTTCGGCATGCGGGCGAAGCTCACCATCAACTGTACGCCGTTAATCAGCACCAGCAGCGCGGTGACCAGAAACACCCAGCGGTAGCCCAACGTGGCGGAAACGGTAGAGCCGAGCAGCGGCCCGACCACGTTGCCGAGATACATGCAGGATTGGTTATACCCGAAAATGCGGCCGGTCACCTGCTGGCTGCTGTATTTCACCAGCAGCGCCTGCACCGCCGGCATCAGCGCGCCGTCGGCGAAACCCAGCGCGAAGCGCAAAATCCCGAGCTGAACCGAGCTTTGCACCGCCGACATCAGGAAGAACAGCAGCGCGCACAGGAACAGCGCCACGATCAGCACCCGCTGGGAACCGATGCGATCCCCCAGCCGGCCGAGGCGCGGCGCGGACAACAGAGCGGACACTCCCGGCACGGCGGCGATAACGCCGCTGATAAACGCGATATTATCAATGTTGGGAGAGAGGTCGCGGATAAACAACGTCAGGATCGGGCTGATGGAACCGTTCGCCATCTGAATCATCATGGTGGTGAAGCACAGGCTGACAATCAGCAGCGGATAAGGCAGCGAGGCGAACACCGCCCGGCCGCTGAGCTGCGCTTTTTTGCTGACGGTAACAGCATTTTCACGGATGGCGAACAGCGTGATGAGAAAGCAGATAAACAACATGGCGGAGGTGACGAAAAACACCATGCGCAGACCGATGGTATCGGCCATGAAGCCGCCGAGCAGCGGACCGATCAACACCCCCGCCACCTGCCCGGTGGACAATGTGCCGAGCGCCCAACCGCTGCGGCTACGCGGCACCTGCGAGGCAATCAGCGCCATGGCGTTGGGAATGTAACCGGAGGTCAACCCCATTAGCGCGCGCAGGATAAACAGCTGCCAGACGTTGGTGGCCATGCCTTGTAGCGCCATGACGATAGACATACCGAGCGCGGCGCGCAGCAACATCAGCTTGCGGCCCTTGCGGTCGGCCAGGCTGCCCCACAGCGGCGCGACAATCGCCGAAATCAGAAACGAGGAACTGAACACCAGCCCAGACCACAGATTGAGCGCGGTGTGATCGCTAACGCCCAGATGTTCGATGTAGAGCGGCAGGAACGGCAGTATCTGGCTCATGGCCATGCCGGTGAAAAAACATCCCAGCCAGGCGGATAAAAGGTTGAGTTTCCAGGTTTCCAT > 425 Dd1591_3427 TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_eca:ECA0769_transporter metabolite/H+_symporter,_major_facilitator_superfamily_(MFS) YP_003005718.1 11 MQASISSTIDTQAPDAPVNSRNKVVVASLIGTAIEFFDFYIYATAAVLIFPHIFFPQGDATAATLQSLATFAIAFVARPIGSALFGHFGDRVGRKVTLVASLLTMGISTVLIGLLPSYETIGVLAPLLLALARFGQGLGLGGEWGGAALLATENAPAHKRALYGSFPQLGAPIGFFFANGTFLLLSWVLTNEQFMSWGWRVPFIASAVLVIIGLYVRVSLHETPVFAKVAKEGKQVRIPLGTLLSKHVKATILGTFIMLATYTLFYIMTVYSMTYGTTPAPAGLGIPRNNFLWMLMMAVIGFGLMIPVAGYLADVVGRRKTMITVTCIMLVFAMAFPSLLGSGDQTLIMAFLVCGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSILGASVAPYIAAWLTSHYGLFYVGVYLAAMASLTLIALLLTKETRHQSLD gamma_subgroup Dickeya_zeae_Ech1591 Dickeya_zeae_Ech1591 NC_012912 3897317..3898642 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ovchinnikova,G.,_Balakrishnan,V.,_Glasner,J._and_Perna,N.T. NA 0:1326 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001655.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4085668Source_DNA_and_bacteria_available_from_Nicole_T._Perna(ntperna@wisc.edu)Contacts:_Nicole_T._Perna_(ntperna@wisc.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Dickeya_zeae_Ech1591GOLD_Stamp_ID_::_Gi03523Temperature_Range_::_MesophileBiotic_Relationship_::_Free_living##Metadata-END##COMPLETENESS:_full_length. NA 25-JAN-2012 Dickeya_zeae_Ech1591_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Dickeya_zeae_C6CJK5_DICZE.gb Dickeya_Samson_et_al._2005 251787652 Unpublished NA NC_012912 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1326 NA genomic_DNA NA Ech1591 NA Dickeya_zeae_Samson_et_al._2005 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 561229 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Dickeya Complete_sequence_of_Dickeya_zeae_Ech1591 NA NC_012912.1 ATGCAAGCCTCCATCTCATCCACTATTGATACTCAAGCACCAGACGCGCCGGTAAACTCGCGCAACAAAGTGGTGGTCGCCTCGCTGATCGGCACCGCCATCGAATTCTTTGATTTTTACATTTATGCTACCGCTGCCGTGCTGATTTTTCCGCACATCTTTTTCCCGCAGGGTGATGCCACCGCCGCGACGCTGCAATCGCTGGCCACTTTCGCCATCGCGTTTGTCGCTCGTCCGATCGGCTCAGCGTTGTTCGGCCACTTCGGTGATCGCGTCGGCCGCAAGGTGACGCTGGTCGCTTCGCTGCTTACCATGGGGATCTCCACCGTATTGATCGGCTTGCTGCCGAGTTATGAAACCATCGGCGTCCTGGCTCCGCTGCTGCTGGCGCTGGCCCGTTTCGGTCAGGGGCTGGGCCTCGGCGGTGAATGGGGCGGCGCGGCGCTGCTGGCGACGGAAAACGCGCCAGCCCACAAACGTGCTTTGTACGGCTCTTTCCCACAATTGGGTGCGCCGATCGGTTTCTTCTTTGCCAACGGCACCTTCCTGCTGCTCTCCTGGGTACTGACTAACGAGCAGTTTATGAGCTGGGGATGGCGCGTACCGTTCATCGCCTCGGCGGTGCTGGTGATTATCGGCCTGTACGTACGCGTATCGCTGCATGAAACGCCGGTGTTTGCCAAAGTCGCCAAAGAAGGGAAACAGGTGCGTATACCGTTGGGTACTCTGCTGAGCAAACATGTGAAAGCCACGATTCTGGGCACGTTCATTATGCTGGCGACCTACACCCTGTTTTACATCATGACCGTCTACTCCATGACCTACGGCACCACCCCCGCACCGGCAGGGCTTGGCATTCCACGTAATAACTTCCTGTGGATGCTAATGATGGCAGTCATCGGTTTTGGGTTGATGATCCCGGTGGCGGGCTATCTGGCCGACGTCGTCGGTCGTCGCAAGACCATGATCACGGTGACCTGCATTATGCTGGTGTTCGCGATGGCGTTCCCGTCACTGCTGGGTTCAGGCGATCAGACGCTGATTATGGCGTTTCTGGTGTGTGGTCTCAGCCTGATGGGGCTGACTTTCGGCCCAATGGGCGCGTTGTTGCCGGAACTGTTTCCCACTGAAGTGCGTTATACCGGTGCCTCGTTTTCCTACAATGTTTCCTCGATTCTGGGGGCATCCGTAGCACCGTATATCGCCGCCTGGCTGACCAGCCATTACGGGCTGTTCTACGTGGGCGTTTACCTCGCCGCCATGGCCTCGCTGACGCTGATAGCGCTGCTGCTGACGAAAGAAACCCGTCACCAGTCTCTCGACTAA > 426 Dfer_3990 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_rso:RSp0007_putative_alpha-ketoglutarate_permease_transmembrane_protein general_substrate_transporter YP_003088359.1 11 MEQTLHKDDTGWRLRAIIGGSAGNLVEWYDWYAYSAFSLYFANTFFPDSNPTVQLINTAGIFAVGFLMRPIGGYVFGKLADNRGRKVAMTVSVLLMSLGSLLIAFLPGYNSIGVAAPLLLLLARLLQGLSVGGEYGTSATYLSEVATEAKRGFFSSFQYVTLIGGQLIALGLQLILQNIFLTDQQMHDWGWRIPFVIGALLSLVALYLRAHLNETEAFQSKDPKTKKEGSLRELMKHPKAVLVVVGLTAGGTLAFYTYTTYMQKFLVNTVGLTKYQSTLLTFCSLFIFAALQPVFGALSDRIGRRPLLIAFGVLGTIFTYPLLATLSHTTGMWPAFGLLMAALIIVSGYTSINAVVKAELFPVEVRALGVGLPYSIAVAVFGGTAEYFALWAKNIGHETWYYWYVTACIFASLIVYIRMKDTKHTSLIEKH Cytophagia Dyadobacter_fermentans_DSM_18053 Dyadobacter_fermentans_DSM_18053 NC_013037 4838844..4840139 Lang,E.,_Lapidus,A.,_Chertkov,O.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Copeland,A.,_Glavina_Del_Rio,T.,_Nolan,M.,_Chen,F.,_Lucas,S.,_Tice,H.,_Cheng,J.F.,_Land,M.,_Hauser,L.,_Chang,Y.J.,_Jeffries,C.D.,_Kopitz,M.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Ovchinnikova,G.,_Pati,A.,_Ivanova,N.,_Mavrommatis,K.,_Chen,A.,_Palaniappan,K.,_Chain,P.,_Bristow,J.,_Eisen,J.A.,_Markowitz,V.,_Hugenholtz,P.,_Goker,M.,_Rohde,M.,_Kyrpides,N.C._and_Klenk,H.P. NA 0:1296 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001619.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4082745Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_Cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Dyadobacter_fermentans_NS114,_DSM_18053Culture_Collection_ID_::_DSM_18053,_ATCC_700827,_CIP_107007GOLD_Stamp_ID_::_Gi02155Funding_Program_::_DOE-GEBA_2007Number_of_Reads_::_86260Assembly_Method_::_Phred/Phrap/ConsedSequencing_Depth_::_10.6xGene_Calling_Method_::_ProdigalIsolation_Site_::_Surface_sterilized_stems_from_Zea_maysCollection_Date_::_about_1998Isolation_Country_::_USAOxygen_Requirement_::_AerobeCell_Shape_::_Rod-shapedMotility_::_NonmotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileTemperature_Optimum_::_28CGram_Staining_::_gram-Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Host,_SoilEnergy_Source_::_Chemoorganoheterotroph##Metadata-END##COMPLETENESS:_full_length. NA 27-JAN-2012 Dyadobacter_fermentans_DSM_18053_chromosome,_complete_genome. NA Vitreoscillaceae_Pringsheim_1949_(Approved_Lists_1980) /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Dyadobacter_fermentans_C6VYY8_DYAFD.gb Dyadobacter_Chelius_and_Triplett_2000_emend._Reddy_and_Garcia-Pichel_2005 255033817 Stand_Genomic_Sci_1_(2),_133-140_(2009) NA NC_013037 NA NA Cytophagales_Leadbetter_1974 Cytophaga-Flexibacter-Bacteroides_phylum 21304649 1296 NA genomic_DNA 471854 DSM_18053 NA bacterium_NS114 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 471854 Bacteria,_Bacteroidetes,_Cytophagia,_Cytophagales,_Cytophagaceae,_Dyadobacter Complete_genome_sequence_of_Dyadobacter_fermentans_type_strain_(NS114) NA NC_013037.1 TCAATGCTTTTCGATGAGCGAAGTGTGCTTGGTGTCCTTCATGCGGATGTAAACAATGAGCGAAGCGAAAATGCAGGCCGTCACATACCAGTAGTACCAGGTTTCGTGCCCTATATTCTTGGCCCATAATGCAAAGTATTCCGCCGTGCCGCCAAACACGGCCACCGCAATGGAGTAGGGCAGCCCTACACCCAGCGCACGCACTTCCACTGGAAAAAGTTCGGCTTTCACCACGGCATTAATGGAGGTATAACCGCTCACGATGATCAACGCGGCCATGAGCAGCCCGAATGCGGGCCACATGCCTGTAGTGTGGCTGAGCGTAGCTAGCAGCGGATAGGTAAAAATCGTTCCCAGCACGCCGAATGCTATCAGCAGCGGGCGGCGGCCAATGCGGTCGCTGAGCGCCCCGAAAACGGGTTGCAATGCCGCGAAGATGAACAAAGAGCAAAAAGTAAGCAGAGTCGACTGGTACTTTGTGAGCCCCACCGTGTTCACAAGGAACTTCTGCATGTATGTGGTGTAGGTGTAAAATGCGAGTGTCCCGCCCGCGGTAAGCCCCACGACCACCAACACGGCCTTCGGATGCTTCATAAGCTCTCTCAGCGAGCCTTCCTTTTTTGTTTTGGGATCTTTGGATTGAAATGCTTCGGTTTCGTTCAGATGCGCGCGGAGGTACAATGCTACGAGCGAAAGCAATGCTCCGATAACGAACGGAATGCGCCAGCCCCAGTCGTGCATTTGCTGGTCGGTGAGGAAAATGTTTTGTAAAATGAGTTGCAAACCCAATGCAATAAGCTGTCCGCCAATGAGCGTCACATATTGAAAACTGGAAAAGAAACCACGTTTCGCCTCCGTAGCCACCTCGCTGAGGTAGGTGGCCGAAGTACCATATTCCCCGCCCACACTAAGGCCTTGCAGCAAGCGGGCGAGCAGCAGCAGAAGCGGAGCCGCCACGCCGATGCTGTTATAGCCGGGCAGGAATGCAATCAGCAGCGAGCCAAGCGACATCAGCAGCACCGACACGGTCATGGCCACCTTTCGCCCGCGGTTATCGGCCAGTTTGCCAAAAACATAGCCGCCGATCGGCCGCATCAGGAAACCCACTGCGAAAATGCCGGCGGTATTGATCAGCTGGACCGTGGGATTGGAATCTGGGAAGAAAGTATTGGCGAAATAGAGAGAGAAGGCGGAATAGGCGTACCAGTCGTACCATTCGACGAGATTGCCGGCCGATCCGCCGATAATGGCTCTGAGGCGCCAGCCGGTGTCGTCTTTGTGTAAAGTTTGCTCCAT > 427 EDWATA_03153 NA putative_metabolite_transport_protein_YaaU EFE21847.1 11 MEQHKRFDDISFTPVHRKIMLWGSGGPFLDGYVLVIIGIALEQLTPLLQLDANWIGLVGAATLVGLFIGTSLFGYIADRVGRRLMFLIDIIAIGVISAATMFVSSPLELVILRFLIGIVIGADYPIATSMIAEFSSTKQRAFTMGFIAAMWYIGATAADLVGYLLYDVENGWRWMLGSAIIPCIVILLGRVELPESPRWLIRKGRHAECQALMIKLFGQPVSFDDETQQETRYRDIFSRRHLSSILFVALIWTCQVIPMFAIYTFGPQIVTLLGLEQGREAVLGNVVISLFFMLGCLPAMYWLNSIGRRPLLIGSFAVMTLALLMLGLIDQPGILLIVSAFALYAFFSGGPGILQWLYPNELFPTAIRASAVGAAMSLSRIGTVVSTYALPLFMQQHGISATMLVGAGISLVGLLVSVMMAPETRGLTLEETSQMSLRRSRG gamma_subgroup Edwardsiella_tarda_ATCC_23685 Edwardsiella_tarda_ATCC_23685 ADGK01000263 741..2069 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Nelson,J.,_Hou,S.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Nash,W.E.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1329 Edwardsiella_tarda_(GenBank_Accession_Number_for_16S_rDNA_gene:EU259317)_is_a_member_of_the_Proteobacteria_division_of_the_domainbacteria_and_has_been_isolated_from_human_feces._The_sequencedstrain_was_obtained_from_ATCC_(ATCC_23685).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.This_work_was_supported_by_the_National_Human_Genome_ResearchInstitute_and_the_NIH_Roadmap_Human_Microbiome_Projecthttp://nihroadmap.nih.gov/hmp/.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_17.1xSequencing_Technology:_454Annotation_was_added_to_the_contigs_in_March_2010. NA 16-MAR-2010 Edwardsiella_tarda_ATCC_23685_E_tarda-1.0_Cont4.235,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Edwardsiella_tarda_D4F8Q3_EDWTA.gb Edwardsiella_Ewing_and_McWhorter_1965 284798280 Submitted_(13-JAN-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADGK01000263 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1329 NA genomic_DNA NA ATCC_23685 NA Paracolobactrum_anguillimortiferum NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 500638 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Edwardsiella Direct_Submission NA ADGK01000263.1 ATGGAACAGCATAAAAGATTCGATGACATCAGTTTTACGCCGGTGCACCGCAAGATCATGCTGTGGGGGAGCGGCGGCCCGTTCCTCGATGGCTACGTACTGGTGATCATCGGCATCGCCTTAGAGCAGCTGACACCGCTGCTGCAACTGGATGCCAACTGGATAGGCTTAGTCGGCGCCGCCACCCTGGTCGGCCTGTTCATCGGTACCTCGCTATTCGGCTATATTGCCGACCGCGTCGGCCGCCGCCTGATGTTTCTGATCGACATCATCGCCATCGGGGTGATCTCCGCCGCCACCATGTTCGTCAGCTCACCACTGGAGTTGGTGATCCTGCGTTTCCTGATCGGCATCGTCATCGGCGCCGACTACCCCATCGCCACCTCGATGATCGCCGAATTCTCCTCCACCAAGCAGCGCGCCTTCACCATGGGATTCATCGCCGCGATGTGGTACATCGGCGCCACCGCCGCCGATCTGGTCGGCTACCTGCTGTATGACGTGGAAAACGGCTGGCGTTGGATGCTGGGCAGCGCCATCATCCCCTGTATCGTCATCTTACTGGGGCGGGTCGAGTTGCCGGAGTCGCCACGCTGGTTGATCCGCAAGGGACGCCATGCCGAATGCCAGGCGCTGATGATTAAACTGTTCGGCCAACCGGTCTCCTTCGACGACGAGACGCAGCAAGAGACGCGCTACCGCGACATCTTCAGCCGGCGTCACCTCTCCTCGATCCTGTTCGTCGCCCTGATCTGGACTTGTCAGGTGATCCCCATGTTCGCCATCTACACCTTTGGCCCGCAGATCGTCACCCTCCTGGGACTCGAGCAGGGGCGCGAGGCGGTATTGGGCAACGTGGTGATCAGCCTGTTCTTCATGTTGGGCTGCCTACCGGCCATGTATTGGCTGAACAGTATCGGACGCCGCCCGCTGTTGATCGGCAGTTTCGCCGTCATGACCCTGGCGTTACTGATGTTAGGCCTGATCGATCAGCCGGGTATTCTCTTGATCGTCAGCGCCTTCGCCCTGTATGCCTTCTTCTCTGGCGGCCCGGGTATTCTACAATGGCTCTATCCTAACGAACTGTTCCCCACCGCCATTCGCGCCTCGGCGGTCGGCGCCGCCATGTCGCTGAGCCGCATCGGCACCGTCGTCTCGACCTATGCCCTGCCACTGTTCATGCAGCAACACGGCATCTCCGCCACCATGCTGGTCGGCGCGGGGATCTCGCTGGTCGGCCTGTTAGTGTCGGTGATGATGGCGCCGGAAACGCGCGGTCTGACGCTGGAAGAGACCAGCCAGATGAGCTTGCGCCGCAGCCGAGGTTAA > 428 ETAF_1285 NA Sialic_acid_transporter_NanT ADM41397.1 11 MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTDVQAEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVSSIILFSVGTLACGLAPGYTTMFIARLVIGMGMAGEYGSSATYVIESWPRQLRNKASGFLISGFSVGAVVAAQVYSLVVPTWGWRALFFIGILPIIFALWLRKNIPEAHDWKEKHAGKAPVRTMVDILYRGEHRLINMLMTAVAAIALWFCFAGDLQNAAIVAILGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTELNYSPAIVAQVLFFSGFGAAVGCCVGGFLGDWLGSRKAYAYSLLASQLLIIPVFSIGGTQVWVLGILLFFQQMLGQGISGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALCSLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGRYKGNVAKSKG gamma_subgroup Edwardsiella_tarda_FL6-60 Edwardsiella_tarda_FL6-60 CP002154 1486578..1488068 van_Soest,J.J.,_Stockhammer,O.W.,_Ordas,A.,_Bloemberg,G.V.,_Spaink,H.P._and_Meijer,A.H. NA 0:1491 The_bacteria_is_available_from_Herman_Spaink_ath.p.spaink@biology.leidenuniv.nl. NA 21-NOV-2011 Edwardsiella_tarda_FL6-60,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Edwardsiella_tarda_E0T5I1_EDWTF.gb Edwardsiella_Ewing_and_McWhorter_1965 304557459 BMC_Immunol._12,_58_(2011) NA CP002154 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 22003892 1491 NA genomic_DNA NA FL6-60 NA Paracolobactrum_anguillimortiferum NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 718251 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Edwardsiella Comparison_of_static_immersion_and_intravenous_injection_systems_for_exposure_of_zebrafish_embryos_to_the_natural_pathogen_Edwardsiella_tarda NA CP002154.1 ATGAGTACGACAACCCAGAACATCCCGTGGTATCGCCATCTCAATCGGGCACAGTGGAGAGCCTTTTCCGCCGCCTGGTTGGGGTACCTGCTTGATGGTTTTGACTTTGTTTTAATTGCCCTGGTGTTGACCGATGTCCAGGCTGAATTCGGACTGACAACGGTACAGGCGGCCAGCCTGATCTCCGCTGCCTTTATTTCCCGCTGGTTCGGTGGACTGATGCTGGGCGCCATGGGCGACCGCTACGGCCGTCGTCTGGCGATGGTCTCCAGTATTATCCTCTTCTCCGTCGGGACGTTAGCCTGCGGCCTGGCGCCGGGCTACACCACCATGTTTATCGCCCGCCTGGTCATTGGCATGGGGATGGCGGGGGAATATGGCTCCAGCGCCACCTATGTCATCGAGAGCTGGCCTAGGCAGCTGCGTAACAAAGCCAGCGGCTTCCTGATCTCCGGTTTCTCCGTCGGTGCGGTGGTGGCGGCCCAAGTCTATAGCTTGGTGGTGCCCACCTGGGGCTGGCGTGCGCTGTTTTTCATCGGCATCCTGCCGATCATCTTCGCCCTTTGGCTGCGTAAAAACATTCCTGAAGCTCATGACTGGAAAGAGAAGCATGCCGGTAAGGCGCCGGTCCGTACTATGGTGGATATCCTCTATCGTGGCGAACATCGGCTGATTAACATGCTGATGACGGCGGTCGCCGCCATCGCGCTGTGGTTCTGCTTCGCTGGCGACTTACAGAATGCGGCCATCGTGGCGATCCTGGGGCTGCTGTGCGCCGCTATCTTCATCAGTTTTATGGTACAGAGCAGTGGCAAACGTTGGCCTACCGGGGTGATGTTGATGGTGGTGGTGCTGTTTGCCTTCCTCTACTCCTGGCCGATCCAGGCGCTGTTGCCCACCTATCTGAAAACCGAGCTGAACTATAGCCCGGCCATCGTGGCGCAGGTTCTGTTCTTCAGTGGCTTCGGCGCGGCGGTTGGCTGCTGTGTCGGCGGTTTTCTCGGTGACTGGCTGGGTAGCCGTAAGGCATATGCCTACAGCCTGCTGGCCTCACAATTACTGATTATCCCGGTGTTTTCCATCGGCGGGACGCAGGTTTGGGTACTGGGTATCCTGTTGTTCTTCCAGCAGATGTTGGGGCAAGGTATCTCAGGGATCCTGCCAAAGCTGATCGGCGGTTACTTCGATACCGATCAACGGGCGGCCGGTCTGGGCTTTACCTACAACGTCGGGGCACTCGGGGGCGCATTGGCACCGATCCTCGGGGCGCTGATCGCCCAGCGTCTGGATCTCGGTACCGCCTTGTGTTCCCTCTCTTTTAGCCTGACCTTCGTGGTGATCCTGCTGATCGGTCTCGACATGCCCTCGCGGGTACAGCGTTGGCTGCGTCCTGAGGCACTGCGCACGCACGACGCTATCGACGGCAAGCCTTTCAGCGGCGCGGTTCCCTTCGGTCGCTACAAGGGCAACGTAGCGAAGAGTAAAGGGTAA > 429 ETAF_2695 NA Arabinose-proton_symporter ADM42798.1 11 MTFFVCFLAALAGLLFGLDIGVIAGALPFITDTFNITSSQQEWVVSSMMFGAAVGAVGSGWMNHRMGRKYSLMIGAILFVVGSLCSAFAPNVDILILSRILLGLAVGIASYTAPIYLSEIAPERIRGSMISMYQLMITIGILGAYLSDTAFSYTGSWRWMLGVITIPAIVLLLGVFFLPDSPRWLASRNRHEQARQVLEKLRDSSQQAQDELNDIRDSLKLKQSGWALFLQNSNFRRAVYLGILLQVMQQFTGMNVIMYYAPKIFDLAGFASTEQQMWGTVIVGLVNVLATFIAIGLVDRWGRKPTLILGFIVMAIGMGTLGTMMHIGITSSVVQYFAIFMLLLFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNNLGSAHTFWVYAALNLIFIFITLALIPETKNISLEHIERNLMAGKSLRNIGSR gamma_subgroup Edwardsiella_tarda_FL6-60 Edwardsiella_tarda_FL6-60 CP002154 3075233..3076585 van_Soest,J.J.,_Stockhammer,O.W.,_Ordas,A.,_Bloemberg,G.V.,_Spaink,H.P._and_Meijer,A.H. NA 0:1353 The_bacteria_is_available_from_Herman_Spaink_ath.p.spaink@biology.leidenuniv.nl. NA 21-NOV-2011 Edwardsiella_tarda_FL6-60,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Edwardsiella_tarda_E0T7L4_EDWTF.gb Edwardsiella_Ewing_and_McWhorter_1965 304557459 BMC_Immunol._12,_58_(2011) NA CP002154 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 22003892 1353 NA genomic_DNA NA FL6-60 NA Paracolobactrum_anguillimortiferum NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 718251 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Edwardsiella Comparison_of_static_immersion_and_intravenous_injection_systems_for_exposure_of_zebrafish_embryos_to_the_natural_pathogen_Edwardsiella_tarda NA CP002154.1 ATGACGTTCTTTGTCTGCTTTCTGGCCGCGCTAGCGGGCCTGCTGTTTGGTCTGGATATCGGGGTGATCGCCGGCGCACTGCCGTTTATTACCGATACCTTTAACATCACCAGCTCGCAGCAGGAGTGGGTCGTCAGCTCGATGATGTTCGGGGCCGCCGTCGGCGCCGTCGGCAGCGGCTGGATGAACCACCGTATGGGGCGTAAATACAGCCTGATGATCGGGGCGATTCTGTTCGTCGTCGGCTCCCTGTGCTCCGCCTTCGCCCCTAACGTCGATATTCTGATCCTGTCGCGTATCCTGCTGGGGCTGGCCGTCGGCATCGCCTCCTACACCGCGCCGATCTACCTGTCCGAGATCGCCCCGGAGCGCATCCGCGGCAGCATGATCTCGATGTACCAGCTGATGATCACCATCGGGATCCTCGGTGCCTATCTGTCCGACACCGCCTTTAGCTATACCGGCTCCTGGCGCTGGATGCTGGGGGTGATCACCATCCCGGCCATCGTGCTGCTACTGGGGGTCTTCTTCCTGCCGGATAGCCCGCGCTGGCTGGCCTCCCGTAACCGCCACGAGCAGGCGCGTCAGGTGCTGGAAAAGCTGCGCGACAGCAGCCAGCAGGCCCAGGATGAGCTGAACGATATTCGTGACAGTCTGAAGTTAAAGCAGAGCGGCTGGGCGCTGTTCCTGCAGAACAGCAACTTTCGCCGGGCGGTCTATCTGGGGATTCTGCTGCAGGTAATGCAGCAGTTTACCGGGATGAACGTCATCATGTACTACGCACCGAAAATCTTCGATCTGGCCGGCTTTGCCAGCACCGAACAGCAGATGTGGGGAACGGTGATCGTCGGCCTGGTCAACGTATTGGCCACCTTCATCGCCATCGGCCTGGTGGACCGCTGGGGCCGTAAGCCGACGCTGATCCTGGGCTTTATCGTCATGGCCATCGGGATGGGCACCCTGGGCACCATGATGCACATCGGCATTACCTCTAGCGTGGTGCAGTACTTCGCCATCTTTATGCTGCTGCTGTTTATCGTCGGCTTCGCCATGAGCGCCGGCCCGCTGATCTGGGTACTGTGCTCCGAAATCCAGCCGCTGAAAGGGCGTGACTTCGGCATCACCTGCTCCACCGCCACCAACTGGATCGCCAACATGATCGTCGGGGCAACCTTCCTGACCATGCTGAACAATCTGGGCAGCGCCCACACCTTCTGGGTCTACGCCGCCCTGAACCTGATCTTCATCTTCATTACCCTGGCGCTGATCCCGGAGACCAAGAATATCTCCCTGGAGCACATCGAGCGTAATCTGATGGCCGGCAAATCGCTGCGCAACATCGGCTCGCGCTAA > 430 ECH_0818 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter YP_507614.1 11 MSHGSSKKAIISVFLCAFIECYDFLVYGNFGHIFSQMFFSQVNSENLSLILSFATFAIAFLVRPFGSLLFGYIGDKYGRKISLFISATLLILSVGGIAFLPLVSSIGVISPILLVVLRIFQGLSFGGEVGAIVLIAESVRKDQVVAVLSLHFAIAILGGATGSFIFQLCYNFIPEAQFYSWGWRIPFIIGLVMSMMLPILRNSVEESKQYLEYTSGKKVSKVPILDIILRHKKISVITFSLIAASNALFYVFFVFLNIQQKVSIPIYSLLIFTMLVSGFISFLFFRVYKPENVSLVIQVLFIVCVSPVVYLLGLNSIVSYFILAIVLGMYATPILSILIFLFPVNIRQTGFSMCYSVAAGLGGATPAVCLWLIELTGCSMSPIFYLDFYVLFSLLGLLCLKRYNEKQCEVAYA alpha_subgroup Ehrlichia_chaffeensis_str._Arkansas Ehrlichia_chaffeensis_str._Arkansas NC_007799 830887..832128 Hotopp,J.C.,_Lin,M.,_Madupu,R.,_Crabtree,J.,_Angiuoli,S.V.,_Eisen,J.A.,_Seshadri,R.,_Ren,Q.,_Wu,M.,_Utterback,T.R.,_Smith,S.,_Lewis,M.,_Khouri,H.,_Zhang,C.,_Niu,H.,_Lin,Q.,_Ohashi,N.,_Zhi,N.,_Nelson,W.,_Brinkac,L.M.,_Dodson,R.J.,_Rosovitz,M.J.,_Sundaram,J.,_Daugherty,S.C.,_Davidsen,T.,_Durkin,A.S.,_Gwinn,M.,_Haft,D.H.,_Selengut,J.D.,_Sullivan,S.A.,_Zafar,N.,_Zhou,L.,_Benahmed,F.,_Forberger,H.,_Halpin,R.,_Mulligan,S.,_Robinson,J.,_White,O.,_Rikihisa,Y._and_Tettelin,H. NA 0:1242 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000236.COMPLETENESS:_full_length. NA 14-MAY-2010 Ehrlichia_chaffeensis_str._Arkansas,_complete_genome. NA Ehrlichieae_Philip_1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ehrlichia_chaffeensis_Q2GG19_EHRCR.gb possibly_"Donatienella"_Rousselot_1948 88657561 PLoS_Genet._2_(2),_E21_(2006) NA NC_007799 NA NA rickettsias purple_photosynthetic_bacteria_and_relatives 16482227 1242 NA genomic_DNA NA Arkansas NA Ehrlichia_chaffensis NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 205920 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rickettsiales,_Anaplasmataceae,_Ehrlichia Comparative_genomics_of_emerging_human_ehrlichiosis_agents NA NC_007799.1 TTATGCATATGCTACTTCACATTGCTTTTCATTATATCGTTTCAAACACAAAAGACCAAGTAAAGAGAACAACACATAAAAATCTAAATAAAATATAGGAGACATGCTACATCCAGTTAATTCTATTAACCATAAACAAACTGCAGGAGTAGCACCACCAAGGCCTGCTGCAACACTATAACACATTGAAAAACCAGTTTGTCTAATATTAACCGGAAATAAAAATATCAATATAGATAAGATAGGAGTTGCATACATACCTAATACAATTGCTAATATAAAATAACTAACTATAGAGTTAAGCCCTAATAAATACACAACAGGAGATACACATACAATAAATAAAACTTGAATTACCAATGATACATTTTCTGGTTTGTATACCCGAAAAAAAAGAAAAGATATAAAACCTGATACCAACATTGTAAATATTAAAAGACTATAAATTGGTATACTTACTTTCTGCTGTATATTTAAAAATACAAAAAATACATAAAATAAAGCATTAGAAGCTGCTATTAAACTAAATGTAATTACAGAAATCTTTTTATGCCGTAATATGATATCTAAAATAGGAACTTTAGAAACTTTTTTACCAGATGTATACTCTAAATATTGTTTACTTTCTTCAACAGAGTTACGTAAAATAGGCAACATCATAGACATTACCAAACCAATAATAAATGGTATTCTCCACCCCCAAGAGTAAAATTGAGCTTCCGGAATAAAGTTATAACACAACTGAAAAATAAAAGACCCAGTTGCTCCTCCAAGTATTGCTATTGCAAAATGTAGGCTTAATACTGCAACAACTTGATCTTTCCTAACACTTTCTGCTATTAACACAATAGCACCTACTTCACCTCCAAAAGATAACCCCTGAAAAATGCGCAGTACCACCAATAAAATAGGAGATATTACACCTATGGAACTAACAAGAGGTAAAAATGCAATACCTCCAACCGATAAAATAAGCAAGGTTGCAGAAATAAACAAAGAAATCTTTCTCCCATACTTATCTCCAATATACCCAAATAACAATGAGCCGAAAGGTCTAACAAGAAAAGCTATTGCAAATGTAGCAAACGATAATATTAATGACAAATTCTCACTATTGACTTGAGAAAAAAACATTTGACTGAATATATGGCCAAAATTTCCATATACTAAAAAATCATAACACTCTATAAAAGCACACAAAAATACAGATATTATTGCTTTTTTACTAGAACCATGTGACAT > 431 EchaDRAFT_0736 NA General_substrate_transporter:Major_facilitator_superfamily EAM86094.1 11 MLTTSNLKPMLSVLLCAFIECYDFLVYGNFSRIFSQMFFSHLTEGFALLLSFMTFGIAFFVRPFGSLLFGYVGDKYGRKIALFSSATLLIVSVGGIAFLPLFESIGVLSPILLIVFRILQGLSFAGEIGSVVLMAENVRDRRNIAYAMGSHFLVSIFGGAIGCFVFKLCYNLIPEAQFYSWGWRIPFIIGLIMSLLLPLLRTSVEESREYLDYKSKRKISRMPILDVIFNHKKPFIVACIFVPFCNSLFYTFFVFLDVQSKVSMSVYALLILTVTLSCCLFTMLCRIYKTTTVALCIQVFFIIGISPLIWFFGKSIVTYFLVAFSLGICATPLIAVIMLLFPANVRQTGYSVAFSLAVGCFSMLTPAVLLWLEKFSIPPVLCIDFYALLSLYGFYCLKKDKKVAEYESVFV alpha_subgroup Ehrlichia_chaffeensis_str._Sapulpa Ehrlichia_chaffeensis_str._Sapulpa AAIF01000001 29561..30796 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,C.,_Glavina,T.,_Hammon,N.,_Israni,S.,_Pitluck,S._and_Richardson,P. NA 0:1236 URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Jere_Mcbride(jemcbrid@utmb.edu)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLContact:_Paul_Richardson_(microbes@cuba.jgi-psf.org). NA 20-JUN-2005 Ehrlichia_chaffeensis_str._Sapulpa_ctg202,_whole_genome_shotgun_sequence. NA Ehrlichieae_Philip_1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ehrlichia_chaffeensis_Q40KF9_EHRCH.gb possibly_"Donatienella"_Rousselot_1948 67999438 Unpublished NA AAIF01000001 NA NA rickettsias purple_photosynthetic_bacteria_and_relatives NA 1236 NA genomic_DNA NA Sapulpa NA Ehrlichia_chaffensis NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 332415 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rickettsiales,_Anaplasmataceae,_Ehrlichia Sequencing_of_the_draft_genome_and_assembly_of_Ehrlichia_chaffeensis_str._Sapulpa NA AAIF01000001.1 ATGTTGACAACTTCCAATTTAAAGCCAATGCTATCAGTACTTCTGTGTGCATTTATAGAATGTTATGATTTTTTAGTGTATGGGAATTTTAGTAGAATATTTAGTCAGATGTTTTTTTCTCATCTAACAGAAGGTTTTGCGTTATTGTTGTCATTTATGACATTTGGAATAGCTTTTTTTGTTAGACCTTTTGGGTCATTGTTATTTGGTTATGTTGGTGATAAGTATGGTAGAAAAATTGCTTTATTTAGCTCTGCAACCTTACTTATTGTTTCAGTGGGTGGTATAGCCTTTCTTCCTCTTTTTGAATCTATAGGTGTATTATCGCCTATTTTACTGATAGTATTTCGTATTTTACAAGGATTATCCTTTGCTGGAGAAATAGGGTCTGTAGTTTTGATGGCAGAAAATGTAAGGGATCGTCGTAATATTGCATATGCAATGGGTAGTCATTTTCTAGTGTCAATATTTGGTGGCGCAATAGGATGTTTTGTCTTTAAGTTGTGTTATAATTTAATTCCAGAAGCTCAATTTTATTCTTGGGGATGGAGAATACCATTTATTATCGGATTGATAATGTCTTTATTGTTACCTTTGTTGCGTACTTCTGTTGAAGAAAGTAGAGAGTATTTGGATTATAAAAGTAAGCGTAAAATTTCTAGGATGCCTATTTTAGATGTCATATTCAATCATAAAAAACCTTTTATAGTAGCATGTATTTTTGTACCTTTTTGTAATTCTTTGTTTTACACTTTCTTTGTGTTCTTGGATGTGCAAAGCAAAGTAAGTATGTCGGTGTATGCTTTATTGATTTTAACAGTAACTTTATCGTGTTGTCTGTTTACTATGCTGTGTAGGATATATAAAACTACAACTGTTGCTCTCTGTATTCAGGTGTTTTTTATTATAGGGATATCTCCTCTTATTTGGTTTTTTGGTAAATCTATTGTAACTTATTTTCTTGTAGCATTTTCTTTAGGTATATGTGCAACACCTCTTATTGCTGTAATTATGCTTTTATTTCCAGCGAATGTTAGACAAACTGGGTATTCAGTTGCATTTAGTCTTGCAGTAGGATGTTTTAGTATGTTAACTCCTGCAGTTTTGTTATGGTTGGAAAAATTTAGTATACCTCCTGTACTTTGTATAGATTTTTATGCTTTACTTTCTTTATATGGTTTTTATTGTCTTAAGAAAGATAAGAAAGTTGCTGAATATGAAAGTGTATTTGTATAA > 432 AN9168.2 NA hypothetical_protein XP_682437.1 NA MWTNTSGLRGKSLHLFITFTAVMGFSLFGYNQGMMSGIIAGTEFVGEFEALKMPTDYTDAEYRHINVLRGAVTACYEIGCFFGALVSMFYGERVGRTRVIISGATILIIGAVISCAGFGPHWGLGQFVVGRVVSGIGNGLNTATIPVWQSECSASHNRGLLVCFEGAMIAVGTLIAYWVVFGLSYVDQSVQWRFPVALQVLFALIVVTGAILLPDSPRWFIMRGYDSEAIEVLAKLKNDSPDSEAVLADYNFMKADVEMTKTSQAGFKVLFTFGKTQEFQRCMLGCAGQFFQQFTGCNAAIYYSTLLFEENLHLEHRLALTMGGVFATVYALATIPSFFMIEKVGRRKLFLIGFLGQGLSFIITMACLIKDNEENSKGAIVGIFLFIVFFAFTLLPLPWIYPPEINPLRTRTAGASASTCTNWITNFAVVMFTPLFAATSPWGVYLFFALINFIGVPVAYFFFVETAGRELEEIDIIYAKAHVEKRMPFRVANDMPKLSLAEINQQARELGLDTNSDSHHQVAELGLSSDNSSNEKQEQHEKQ bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_677345 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:1632 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107001).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN9168.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Emericella_nidulans_Q5ARB2_EMENI.gb Emericella 67904361 Nature_438_(7071),_1105-1115_(2005) fungi XM_677345 NA NA green_and_blue_molds sac_fungi 16372000 1632 IV mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_677345.1 ATGTGGACAAACACTTCCGGTCTTCGGGGCAAGTCCCTGCACTTGTTTATCACCTTCACAGCCGTCATGGGTTTCTCGCTCTTCGGCTACAACCAGGGTATGATGTCTGGTATCATCGCTGGAACTGAGTTCGTCGGTGAATTCGAGGCGCTCAAGATGCCTACGGATTATACCGACGCCGAGTACCGACACATCAACGTCCTGCGTGGTGCAGTCACTGCTTGCTACGAAATCGGTTGTTTCTTTGGCGCGCTCGTTTCTATGTTTTATGGTGAGAGAGTCGGTCGTACTCGCGTCATCATCAGCGGCGCGACCATCCTCATTATCGGTGCCGTCATCTCGTGCGCCGGCTTCGGCCCGCACTGGGGTCTGGGGCAGTTCGTTGTCGGCCGTGTCGTCTCCGGAATCGGTAACGGTCTCAACACCGCGACCATCCCTGTCTGGCAGTCCGAGTGTTCCGCCTCGCACAACCGTGGTCTTCTCGTCTGCTTCGAGGGTGCCATGATCGCCGTCGGTACCCTGATCGCTTACTGGGTCGTCTTCGGTCTGTCCTACGTCGACCAGTCGGTGCAGTGGCGGTTCCCCGTCGCTCTCCAGGTCCTGTTCGCGCTCATCGTCGTCACCGGTGCCATCCTCCTCCCTGACTCCCCTCGTTGGTTCATCATGCGCGGCTACGACTCTGAGGCCATCGAGGTCCTCGCGAAGCTCAAGAACGACTCGCCCGACTCGGAAGCCGTGCTTGCCGACTACAACTTCATGAAGGCGGATGTCGAGATGACCAAGACCAGCCAGGCCGGTTTCAAGGTCCTCTTCACTTTCGGCAAGACTCAGGAGTTCCAGCGCTGCATGCTCGGCTGCGCCGGCCAGTTCTTCCAGCAGTTCACCGGCTGCAATGCTGCCATCTACTACTCAACCCTGCTCTTCGAGGAGAACCTGCACTTGGAACACCGTCTCGCTCTTACCATGGGTGGTGTCTTCGCGACCGTCTACGCCCTCGCCACTATCCCGTCGTTCTTCATGATCGAGAAGGTCGGCCGTCGCAAGCTCTTCCTCATCGGTTTCCTCGGCCAGGGTCTCTCTTTCATCATCACCATGGCCTGTTTGATCAAGGATAACGAGGAGAACTCCAAGGGTGCCATCGTCGGTATCTTCCTCTTCATCGTCTTCTTCGCCTTCACCCTCCTGCCGCTCCCCTGGATCTACCCTCCCGAGATCAACCCTCTCCGTACCCGTACCGCCGGTGCCTCCGCCTCCACTTGCACCAACTGGATCACCAACTTTGCGGTCGTTATGTTCACTCCTCTCTTCGCTGCCACTTCTCCCTGGGGTGTGTATCTCTTCTTCGCTCTCATCAACTTCATCGGTGTTCCCGTCGCGTACTTCTTCTTTGTCGAGACCGCTGGCCGTGAGCTGGAGGAAATTGACATCATCTACGCCAAGGCCCACGTCGAGAAGCGCATGCCTTTCCGCGTCGCCAACGACATGCCCAAGCTCTCTCTCGCCGAGATCAACCAGCAGGCCCGTGAGCTCGGTCTCGACACCAACTCCGATTCTCATCACCAGGTTGCTGAGCTTGGTCTCAGCAGCGACAACAGCAGCAATGAGAAGCAGGAGCAGCATGAGAAGCAGTAA > 433 AN7119.2 NA hypothetical_protein XP_664723.1 NA MVSEHNDGIVHPTSIEKEHAPLEAPSKDDTSLARLAAQQEHHLGFWEAVRCYPNAVLWSVLLSTSIIMEGYDIVLIQSFFAQPSFREKYGQYDAGTSSHQITAPWQNGLSNAVSVGTIIGAFANGYFVHKFGYRKVLLASLVTICGFILISFFSPNLPVLLVGQFLCGIPWGVFATMAPAYASEVCPLALRGYLTVYVNLCWAFGQLISAGVQSGFSEKTGQWSYRIPFAIQWAWPCLLFPILWFAPESPWYYVRVGNHDLAEASINRLGSASQRAHSKETLAMMIHTDEIERSIDEGTSYLDCFRGVDLRRTEIACMAFAAQPFCGSAMGGTPTYFFVQAGLPESISFRMSVGGLGIASVGTIFAWFLMRGCGRRTLYLWGLGLLTLVLLAVGFCSVGSNSNASNYAQAGLMLCWLGVYYSTVGPICYAVITEVSSTRLRNKSIVCNSINPEMLNPTAGNWRGKTGFFWGGCSAVFFIWTFFRLPETRRRTFEEIDLLFAKKVDARRFAQYDVDAYGEGQEDIRKQYTGNEGQRFRRHNRISVPFDNSSLHFVYSLPSIDDSMVDLTKSVARDSASVKMTYLLKTQLHSAMRRLRVFGNDSSQPPSVRGTFLGFDLNK bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_659631 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:1860 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107007).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN7119.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Emericella_nidulans_Q5AX61_EMENI.gb Emericella 67541910 Nature_438_(7071),_1105-1115_(2005) fungi XM_659631 NA NA green_and_blue_molds sac_fungi 16372000 1860 IV mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_659631.1 ATGGTCTCCGAGCATAACGATGGGATTGTTCATCCTACCTCCATAGAGAAGGAGCACGCCCCTCTCGAAGCTCCCTCTAAGGATGACACATCTCTTGCCCGCCTTGCGGCTCAACAAGAACATCATTTGGGCTTCTGGGAGGCGGTGCGGTGCTATCCAAATGCCGTCCTGTGGTCGGTACTCCTCTCGACTTCGATTATTATGGAGGGATATGATATCGTTCTGATCCAGTCCTTCTTCGCCCAACCGTCATTCCGAGAGAAATATGGCCAATACGACGCTGGCACCAGTAGTCATCAGATTACCGCTCCCTGGCAGAATGGGCTCAGCAACGCTGTCAGCGTTGGTACCATTATTGGAGCTTTTGCCAATGGGTATTTTGTCCATAAATTTGGCTACCGTAAAGTCCTCCTGGCGTCTCTTGTCACGATCTGCGGCTTTATCTTGATTTCCTTCTTTTCGCCCAACTTGCCTGTTCTTTTAGTTGGCCAGTTTCTTTGCGGTATACCGTGGGGTGTATTTGCTACTATGGCACCTGCCTATGCCTCAGAGGTCTGCCCCCTTGCGCTCCGAGGTTATCTTACTGTCTATGTCAACCTGTGTTGGGCATTTGGCCAGCTCATCTCTGCGGGCGTGCAATCGGGCTTTTCTGAGAAAACTGGTCAATGGTCCTACCGCATCCCGTTCGCTATACAGTGGGCCTGGCCCTGCCTACTCTTCCCGATCCTCTGGTTTGCCCCCGAGTCGCCTTGGTACTATGTCCGCGTCGGTAACCACGATCTGGCTGAAGCCTCTATTAATCGGCTGGGATCAGCCTCACAAAGGGCGCACAGCAAGGAAACCCTCGCAATGATGATCCATACAGACGAGATTGAGCGATCAATTGATGAAGGAACCTCATATCTCGACTGCTTTCGTGGCGTGGACCTCCGCCGGACCGAGATTGCATGTATGGCATTCGCGGCACAGCCCTTCTGCGGGAGTGCAATGGGCGGAACGCCAACATATTTCTTCGTCCAGGCTGGCCTTCCGGAGTCTATATCCTTTCGCATGTCGGTTGGTGGCTTAGGTATCGCTTCAGTGGGCACGATCTTTGCATGGTTCTTGATGCGCGGGTGTGGACGGCGCACGTTGTATCTATGGGGGCTGGGCTTACTTACGCTGGTTCTCCTCGCTGTTGGCTTTTGCAGTGTTGGGAGCAATTCGAACGCGAGCAATTATGCCCAGGCCGGGCTGATGCTCTGCTGGCTAGGCGTGTATTACTCGACTGTTGGCCCCATATGCTATGCTGTTATTACAGAGGTTTCGTCCACGCGGCTGAGGAACAAGAGTATTGTCTGCAACAGTATCAACCCGGAGATGCTTAACCCGACTGCGGGCAACTGGCGTGGCAAAACCGGATTCTTCTGGGGGGGCTGCTCGGCTGTTTTTTTCATATGGACCTTCTTCCGCCTGCCGGAGACCAGAAGGCGCACATTTGAGGAGATCGATCTTCTGTTCGCGAAGAAGGTCGATGCTCGTCGCTTTGCGCAGTATGACGTTGATGCTTATGGTGAAGGCCAGGAGGATATCAGGAAACAGTATACTGGTAATGAAGGACAGAGATTTCGGCGACATAATCGAATCAGCGTTCCTTTTGATAACTCTTCTCTTCATTTCGTGTATAGCCTTCCGAGTATCGACGATTCCATGGTTGATCTCACCAAAAGCGTGGCTCGCGACTCTGCCTCAGTGAAGATGACCTACCTGCTCAAGACGCAGCTCCATTCTGCAATGAGAAGACTGCGGGTATTTGGTAACGATTCTAGTCAACCTCCCTCAGTAAGAGGTACATTTCTCGGATTTGATCTCAACAAGTGA > 434 AN7096.2 NA hypothetical_protein XP_664700.1 NA MYWDLGVLLVHCRCGLAGHAATGPLCLRASIGSELRFEAIGSDVVSLDVSFRLLDKLQSEGARLAIAEQALHSASGFRSVCPAIPDFSSTLSTSGRKTFSLFQRVCGTSPWGIAERVWPPSPCAPREKGSDLYIPSETRSKAHASPLVTLAAGSQYRHIICDNSTMTSSINSRPAAGAVAHSSLARRTVGRPDDDPAALVLEAWSQGLMTGSLVIMAAVTFANMRPGVLLHKLILLELILAMAHGTFIFAPEPVYGCLISMTVTASANHGWTSDPWWIYTTCNIFWVVKTHYNFGILELVRECPRFGLMLASMCLSIVFIVLDVISVTGALDAAMPLGINPFWKCLCDTIILDDFKTALDKLSARWLARNGMNGVHASGNRPFVRNRIITPFSVFSAWWTAYADPHSLRPSSGTGASRSWEDHKHDAIGPATQEQGSRVPLDFWGMTVDSVPSGMGWFYYTYCFGLEPRAHSLLVTLSAFFGLVLTACKQPWSIRLQSPEQTMDPHSLPAHDTRRRRNALACNTCRRRRTKCDGKRPKCSFCVERGKDCFYQEPQDLPPSPLKAELSRIWEQLDHIAAIVQGRNPRSSPSPNEQQSHAPLTAPGAPQGFPFMTVQSEAFLILLGLDKYLPMHLEHVERGRQIISAKPSLESIVMVDLADASVLLHAFTEQIYIWYPILHADFTNEFLEAVTSCFPFSLSSCLTLLVLAIGCVVKCESIVDALQARPEAAYIQAASAMLPCVLADSSPRSAQCLLLFSIYHLCYAQPCQAHDFVVMASRKMQNYMLKCVERVPGRVSRTGDDVLTSASRSEPDIGNDTTIIGNCFWIALLIERYPDLRAKKSNLDKLTICSELRVQLDFVDSGIWNMALFAPAPTASSIWTWRELTPSLDSPGSFTSNESVDLSRSDDLSYFVAEIAMRKMLQRCTWATSTLAQGRHVYAPIVAVELERQLDEWLQLLPEPLSFRGRGSTCIGSRPLRNSDSAQVEFLRAQYYAFKASIYWPAVYEALLSSETDGNLIRHCAKFFSSYAEFVPSAAAAVAVCKPNLWTLCASVFTFSMATLLALTEPCLAEVVPQGVYLGLEVAVNVFDGLAEFAVEIDVNMNCRHTAKQQDKQHLRPRHLLPFCDRHKTMGILFKKPEGTEGKAWPAILISGFVAFGGILFGGILAMPYWAQTFSTGYRDSTGQLNVTSSQSSAIVSILSAGTFFGALGAAPVGDIIGRRWGLIASNGVFVLGVVLQTIATSIPPFLAGRFFAGLGVGLISALVPLYQSETAPKWIRGFIVGSYQFSITIGLLLASVLNNATHHRNDSGSYRIPIAVQFAWSIILVGGMLILPETPRYLIKRDDTKAAALSLSKLRRLPQDHESIRQELSEIQANHQFEVSLGKSGYAECFRGSLLKRLLTGCGLQALQQLTGINFIFYYGTQFFKNSGFKNEFVITLITNCVNVGSTIPGLYAIDKWGRRPVLLTGAIGMAVSQLLVAVLGTTTTGQDAQGNIIVHNAAAQKAAIAFICLYIFFFAASWGPIAWVVTGEIFPLKTRAKSLSMTTATNWLLNWALSFATPYLVNYGDGNANLQSKIFFIWFGCCFLCIGFVYFMIYETKGLTLEEVDELYLEVKSARESVSWSPKGTFARVAEKGNGSAGILERTEKGDVGGHREIGAPDGVSV bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_659608 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:4995 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107007).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN7096.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Emericella_nidulans_Q5AX84_EMENI.gb Emericella 67541864 Nature_438_(7071),_1105-1115_(2005) fungi XM_659608 NA NA green_and_blue_molds sac_fungi 16372000 4995 IV mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_659608.1 ATGTACTGGGACTTGGGTGTACTCTTGGTACACTGCCGGTGCGGCCTTGCCGGTCATGCAGCGACTGGACCCCTATGCCTACGAGCTAGTATCGGGTCCGAGTTAAGGTTCGAAGCTATCGGATCCGATGTAGTGTCATTGGACGTCAGTTTTAGACTTTTGGATAAGCTCCAATCAGAGGGTGCAAGACTAGCCATCGCGGAGCAGGCCCTCCACTCCGCGAGCGGGTTTCGCTCCGTCTGTCCGGCGATTCCAGACTTTAGTTCGACCCTTTCGACTTCTGGCCGCAAAACGTTCAGTTTGTTTCAGCGCGTTTGTGGAACTTCCCCATGGGGAATTGCGGAGAGAGTTTGGCCCCCTTCGCCTTGCGCCCCACGAGAAAAGGGAAGCGACCTTTATATTCCCAGCGAAACTCGATCAAAGGCTCACGCATCTCCTCTCGTCACCCTTGCAGCCGGATCACAGTATCGCCATATAATATGTGATAACAGCACTATGACAAGCTCGATCAACAGTCGTCCGGCCGCCGGCGCAGTGGCGCATTCTAGCCTTGCGAGGAGAACTGTTGGACGCCCGGATGACGACCCTGCTGCTCTGGTCCTGGAAGCCTGGTCCCAAGGGCTTATGACGGGGTCACTAGTCATTATGGCTGCTGTTACCTTTGCAAACATGCGGCCGGGCGTCCTGCTACATAAGTTGATCTTACTTGAGCTGATTCTGGCCATGGCCCACGGAACATTTATATTCGCGCCAGAACCTGTATACGGCTGTCTCATCAGCATGACGGTGACTGCCTCAGCTAACCACGGCTGGACAAGTGATCCTTGGTGGATTTACACCACATGCAATATCTTCTGGGTCGTCAAGACACACTACAACTTTGGCATCCTTGAGCTGGTGCGCGAATGCCCTCGCTTTGGGCTCATGCTGGCCTCCATGTGTCTCTCCATTGTGTTCATTGTCTTAGACGTGATCAGCGTGACTGGAGCCCTCGACGCTGCCATGCCGCTCGGCATCAACCCGTTTTGGAAATGCTTGTGCGATACGATTATTCTCGACGATTTCAAGACAGCGCTCGATAAGCTTAGTGCTCGATGGCTAGCGAGGAATGGGATGAATGGGGTTCATGCATCAGGCAACCGCCCCTTTGTCCGCAATAGAATAATAACCCCCTTTTCTGTCTTCTCAGCATGGTGGACAGCATACGCCGATCCACACTCGTTAAGACCTAGTTCTGGCACCGGCGCCTCGAGGAGCTGGGAAGATCATAAACATGATGCCATAGGGCCGGCCACTCAGGAACAGGGTTCCAGAGTGCCATTGGACTTTTGGGGTATGACTGTGGACTCTGTGCCCTCAGGCATGGGGTGGTTTTACTACACTTACTGTTTCGGCCTTGAACCTCGGGCACATTCGCTGCTTGTAACTCTATCAGCATTTTTCGGACTTGTTCTAACGGCCTGCAAGCAGCCCTGGAGTATCAGGCTACAATCGCCGGAGCAGACAATGGATCCCCACAGCCTTCCAGCTCACGACACCCGGAGACGCCGCAACGCGCTGGCCTGCAATACGTGTCGGAGAAGACGGACAAAATGCGACGGCAAGAGACCCAAGTGCTCATTCTGTGTCGAGCGTGGCAAAGACTGCTTCTACCAGGAGCCGCAAGATCTTCCACCGTCTCCGTTGAAGGCGGAGCTCTCGAGGATATGGGAACAACTGGATCACATAGCGGCAATAGTACAGGGCCGAAATCCAAGGAGCTCTCCCTCCCCTAACGAGCAGCAGAGCCATGCTCCTCTTACAGCCCCTGGTGCGCCTCAGGGGTTTCCATTCATGACAGTCCAGAGTGAAGCATTCTTGATCTTGCTTGGCCTGGATAAATACTTGCCTATGCACCTTGAGCACGTGGAACGCGGAAGACAAATTATCAGCGCTAAACCATCGCTGGAGAGCATTGTGATGGTTGACCTTGCGGATGCGTCAGTTCTTCTGCACGCATTCACGGAACAGATATATATCTGGTATCCGATTCTGCATGCCGACTTTACCAATGAATTCCTCGAGGCAGTAACATCTTGTTTCCCTTTCTCGTTGTCCTCATGCCTGACGCTTCTCGTGTTGGCGATTGGCTGCGTGGTGAAGTGCGAATCTATCGTCGACGCTCTGCAGGCACGCCCGGAGGCAGCATACATTCAAGCGGCCTCGGCGATGCTCCCATGCGTGCTTGCAGACAGTAGCCCACGAAGTGCACAGTGTCTGCTCCTGTTCTCCATATACCACCTATGCTATGCGCAGCCATGTCAGGCCCACGATTTCGTGGTAATGGCTTCCCGTAAAATGCAGAATTATATGTTGAAGTGTGTAGAACGTGTTCCAGGGCGAGTATCGAGAACCGGAGACGATGTGCTAACAAGTGCGTCACGCAGTGAACCTGACATTGGTAATGATACCACAATCATTGGAAACTGCTTCTGGATAGCATTGTTGATCGAAAGGTATCCAGACCTCAGGGCCAAGAAAAGCAACTTAGACAAACTGACCATTTGTAGTGAGCTCAGAGTCCAGCTTGACTTCGTCGATAGTGGGATCTGGAATATGGCTCTCTTCGCCCCTGCCCCCACAGCCTCGAGCATCTGGACCTGGCGGGAGCTGACCCCCTCGTTAGACTCCCCAGGATCGTTCACTTCGAACGAGAGCGTGGATCTCTCCCGAAGCGACGATCTATCATACTTTGTCGCGGAGATCGCGATGCGGAAAATGCTGCAGCGCTGCACATGGGCGACGAGCACGCTGGCGCAGGGCAGACACGTCTACGCGCCCATCGTCGCCGTCGAACTTGAGCGCCAATTAGACGAATGGCTTCAACTACTACCGGAGCCGCTATCGTTCCGTGGCCGTGGCTCTACATGTATCGGATCTCGTCCGCTGCGGAATTCTGACTCGGCGCAGGTGGAGTTCCTGCGCGCACAGTATTACGCATTCAAGGCATCTATCTATTGGCCGGCAGTGTACGAGGCCCTTCTAAGTAGTGAGACTGACGGTAACCTTATTCGCCACTGTGCGAAGTTCTTTAGCAGCTATGCCGAGTTCGTCCCTAGTGCAGCAGCAGCAGTTGCTGTCTGTAAGCCCAATCTGTGGACACTGTGTGCAAGTGTGTTCACATTTTCTATGGCCACCCTGCTGGCGCTAACTGAACCGTGTCTGGCTGAAGTGGTTCCCCAGGGGGTCTACCTGGGTCTAGAAGTGGCAGTCAATGTCTTTGACGGGCTGGCGGAGTTTGCCGTAGAAATCGATGTCAATATGAATTGCCGGCACACGGCTAAGCAGCAAGACAAACAGCACCTTCGCCCACGGCACCTTCTGCCATTCTGCGATCGACATAAAACCATGGGCATTCTCTTCAAAAAGCCCGAAGGGACCGAGGGCAAGGCATGGCCTGCCATTTTGATCAGCGGCTTCGTCGCATTCGGGGGAATTCTATTCGGTGGAATCCTTGCCATGCCGTACTGGGCTCAAACCTTTTCTACAGGCTACCGAGACAGCACCGGCCAGTTGAACGTAACCTCTAGCCAGTCCTCTGCCATCGTCTCAATCCTCTCGGCCGGAACATTCTTCGGTGCCCTGGGTGCCGCGCCTGTGGGCGACATCATCGGACGTCGTTGGGGCCTCATTGCGTCAAACGGTGTCTTTGTGCTGGGTGTTGTCCTACAGACGATTGCCACCTCCATCCCGCCGTTCCTCGCAGGTCGCTTCTTTGCCGGATTGGGGGTTGGTCTTATATCTGCGTTGGTTCCCCTCTACCAATCCGAGACCGCACCGAAATGGATCCGCGGATTCATCGTGGGCTCCTACCAGTTCTCCATAACCATCGGCCTCCTTCTTGCCTCAGTTCTCAACAACGCAACCCACCACCGCAACGACTCGGGCTCCTACCGCATCCCAATCGCCGTACAATTTGCCTGGTCCATCATCCTCGTCGGAGGCATGCTTATCCTCCCCGAAACCCCTCGGTACCTGATCAAGCGCGACGACACCAAAGCCGCTGCTCTTTCCCTCTCGAAGCTCCGCCGTCTCCCGCAAGACCACGAGTCCATCCGCCAGGAACTGTCGGAGATCCAAGCTAACCACCAGTTCGAAGTCAGCCTGGGCAAGTCCGGGTACGCCGAGTGTTTCCGGGGGAGCCTCCTGAAGCGTTTGCTCACGGGGTGTGGCCTGCAAGCGCTGCAGCAGCTGACCGGTATCAATTTCATCTTCTACTACGGGACGCAGTTCTTCAAGAACTCCGGATTCAAGAACGAGTTTGTCATCACGCTTATCACGAACTGTGTGAATGTGGGCTCGACGATCCCCGGTCTGTACGCCATCGATAAATGGGGTAGGAGGCCTGTGCTTCTTACGGGGGCGATTGGGATGGCTGTGTCTCAGTTGCTTGTTGCCGTCCTGGGAACGACGACGACTGGCCAGGATGCTCAGGGGAATATTATTGTGCACAATGCTGCGGCGCAAAAGGCCGCGATTGCGTTTATCTGTCTCTACATCTTCTTCTTTGCGGCTTCGTGGGGGCCAATTGCTTGGGTCGTAACAGGCGAAATCTTCCCCCTCAAAACCCGCGCAAAGTCTCTCTCCATGACGACCGCCACAAACTGGCTCCTAAACTGGGCACTGAGCTTCGCAACCCCGTACTTGGTAAACTACGGTGACGGAAACGCAAACCTACAGTCCAAGATCTTCTTCATCTGGTTCGGCTGCTGCTTCCTCTGTATTGGGTTTGTGTACTTTATGATCTATGAGACGAAGGGGCTTACCCTTGAAGAGGTGGATGAGCTTTATCTTGAGGTTAAGAGCGCGAGGGAAAGCGTCAGCTGGAGTCCGAAGGGGACTTTTGCGAGAGTTGCGGAGAAGGGGAATGGTAGTGCAGGTATTCTAGAGCGCACCGAGAAGGGGGATGTTGGGGGGCATAGGGAGATTGGCGCGCCTGATGGGGTGTCGGTCTAG > 435 AN6848.2 NA hypothetical_protein XP_664452.1 NA MASYNHISQEPDSNTLSDSRPSNSSQSLRIHLDYLRIYYLAAVVCAGGLLFGYDSGGVLTFPSFADFFYPSASTNQSETDISALAVATQQAGALLGCLVIWPVTNSVGRRKALALCSLTFCIGVLFEILTLHSLALFYTGRIIAGLGVGGSTTVAPIYLAEMSPPHLRGRLGSGYQFTFTIGIFASYWIDYAFRLLVDDANSAQWRVPLALQLVPGVLMGAGVLSLPESVRWLLGRGETHTHEAWNSLVWVRGSDQGGRVGDEFADMKRAVHRDTEESADFHPRELLLRPNRHRIFLAVSLFIAQQATGATAMAYFGPQFFSILVNPNPQPSEAASASSNSLTLLLTGIFGALKVLSCLSFILFIADRFGRRPLLIFGALGMAFCMIATSVLVHSMPIQDQNPSSTISAKSLTTILLIYLFIVIYNTSWGPLPWPLVAELFPTRTRSSGVALAVASQWASNLVWSFATPFILRDVGANTFLLFGGVCVGAAGFVRLCVPETRGLSLEEVQGLFEEVGGGVEVAHRDGGRDDGAEWERLVGGSEGGGTDYHGEGSLGVNDEDGK bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_659360 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:1692 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107008).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN6848.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Emericella_nidulans_Q5AXY2_EMENI.gb Emericella 67541355 Nature_438_(7071),_1105-1115_(2005) fungi XM_659360 NA NA green_and_blue_molds sac_fungi 16372000 1692 I mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_659360.1 ATGGCTTCCTACAACCATATATCCCAAGAGCCCGACTCCAACACTTTATCCGACTCCCGTCCTTCCAACAGTAGTCAATCGTTACGAATACACCTTGATTACCTCCGCATTTACTACCTCGCAGCCGTCGTCTGTGCCGGCGGTCTGCTCTTTGGCTATGACTCTGGAGGCGTCCTCACGTTCCCTTCCTTCGCAGACTTCTTCTACCCCAGCGCCAGCACCAACCAAAGTGAGACAGATATCAGCGCACTCGCCGTAGCCACCCAGCAAGCTGGCGCACTCCTAGGCTGTCTGGTCATTTGGCCGGTGACAAACTCTGTCGGCCGCCGAAAAGCACTAGCCCTCTGCTCCCTCACCTTCTGCATCGGCGTGCTTTTCGAAATCCTCACCCTCCATTCCCTTGCGCTCTTCTACACCGGCCGTATCATCGCCGGCCTCGGCGTCGGCGGTTCCACGACCGTCGCGCCAATATACCTCGCCGAGATGAGTCCTCCTCATCTCCGCGGCAGACTGGGCAGTGGGTACCAGTTTACCTTTACAATCGGTATCTTCGCGAGCTACTGGATAGATTATGCGTTTCGGCTGCTGGTGGATGACGCGAACTCGGCGCAGTGGCGGGTTCCACTTGCCCTGCAGCTTGTTCCTGGTGTTCTGATGGGTGCAGGCGTACTGAGTCTCCCGGAGAGCGTGCGGTGGCTCCTTGGTCGAGGAGAAACACATACGCATGAGGCATGGAACAGTCTTGTTTGGGTTCGAGGCAGTGATCAAGGAGGCCGCGTGGGTGACGAATTCGCCGACATGAAACGCGCTGTGCACCGCGATACAGAAGAATCAGCCGACTTTCACCCGCGCGAGCTTCTCCTCCGTCCGAACCGCCATCGCATCTTCCTCGCTGTGTCCCTGTTTATCGCGCAGCAGGCCACAGGCGCAACGGCAATGGCGTACTTTGGACCTCAGTTTTTCAGCATTTTAGTTAACCCAAACCCTCAGCCCTCCGAAGCAGCATCAGCATCATCCAATTCCTTAACTCTCCTCTTAACAGGAATCTTTGGCGCCCTTAAGGTCCTCAGCTGCCTATCATTTATCCTTTTTATTGCAGACCGCTTCGGCCGCCGACCACTTCTCATATTTGGGGCTCTGGGAATGGCATTCTGCATGATTGCAACTTCTGTTCTTGTACATTCAATGCCTATTCAGGACCAAAATCCCTCATCCACCATATCAGCAAAGTCCCTAACAACAATCCTCCTAATATACCTCTTTATTGTGATCTACAACACATCCTGGGGTCCGCTTCCCTGGCCGCTCGTCGCAGAGCTCTTCCCGACCCGGACACGCTCAAGCGGAGTGGCCCTCGCAGTTGCAAGCCAGTGGGCGAGTAACCTCGTATGGTCATTTGCGACCCCGTTTATACTGAGGGATGTGGGTGCAAATACTTTTTTGCTGTTTGGAGGCGTCTGTGTGGGGGCTGCGGGATTCGTTAGACTTTGTGTGCCGGAAACGAGGGGGTTAAGCCTTGAGGAGGTGCAAGGGTTGTTCGAAGAGGTTGGTGGGGGGGTTGAGGTTGCGCATAGAGATGGGGGAAGAGATGATGGGGCCGAGTGGGAGCGTCTTGTCGGCGGGAGTGAGGGTGGTGGGACTGATTATCATGGGGAGGGTTCTTTAGGTGTGAACGATGAGGACGGGAAATGA > 436 AN6454.2 NA hypothetical_protein XP_664058.1 NA MSPRLDYNEGYDSEDEEIPRYVHHSRGKSHRSVRTSGRSRTLDYDGDDEASDHAAPSGIDRDARACPTSRRYTDDCLETHKFRGARSSRSRGRTDDNKVLYYTKYRSPAKDLPIERDPEGINLFKVRQHTRPSDAHVPSGYREPYEVKVDEYEDDHPRTCTSRRDSRQPKVYKVRVDEYEDNLPARSHTDFRESPRSERCSSRYTEDSKPGELPPRSGPCRSSRPSPVDEDVEYEIREPRGHRSSRHSTDVDFQPVEQHPRFGQRGLSRPSRVDEEVDYEIREPRGNRVSHAAHGDSPCQDQSSRHIGIQLWTGVPVLSRQLTHAISTPVNMFRTVEDRPTPKEVYNWRLYTEATIIATGTLLFGYDSAFVGTTIARQSFVDAFNIVESEAADISSNITSTFQAGAFFGAIFCFLPEADAGRALTGIACGAITATVPSYIAELSIVSIRGFLTGFFEVAYQIGSLVGFWINYGINENMDNSSAASWRVPMAVQIIPAGVLFIGGFSSMREDIEMNRTRLLEEARIAEKYGQGWLAYIRGALFELSRHGMWNRVLLVLCAFALQNMSGAAAINYYSPILFASLGITDVALYTGIYGLVKAVASIIFYGILIDMWGRRRPTIVSSLACPLCLWFVGAYVKVGHPADIIDAGGELSPSTEAGGRAATAMIMIYSVFWSFGLNGIPWIVSAEIFPGALRNLTGTWAALVQWLIQFVITKALPYIFNSLGYGTWFFFASWMLLAIIWSFFFLPETKGKTLDEMHTIFLSKDGTHTITLR bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_658966 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:2325 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107009).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN6454.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Emericella_nidulans_Q5AZ26_EMENI.gb Emericella 67540567 Nature_438_(7071),_1105-1115_(2005) fungi XM_658966 NA NA green_and_blue_molds sac_fungi 16372000 2325 I mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_658966.1 ATGAGCCCTCGTCTAGACTACAATGAAGGATACGATTCCGAAGACGAGGAGATCCCCCGTTACGTACACCATTCTAGAGGAAAGAGTCATAGATCCGTGAGGACGTCAGGTCGCTCACGCACGTTGGATTACGACGGGGATGATGAAGCTAGTGACCACGCTGCCCCCTCCGGGATTGATCGGGACGCTCGAGCCTGTCCAACATCTCGCAGATATACTGATGACTGCCTTGAGACACATAAATTTCGAGGTGCCCGCTCCTCTCGCTCCCGTGGACGAACCGATGATAACAAGGTTTTGTACTACACCAAGTATCGCAGCCCGGCTAAGGACTTGCCTATCGAGCGTGATCCCGAGGGTATTAATTTATTCAAGGTCCGACAGCACACACGGCCAAGTGACGCTCATGTGCCCAGTGGATACCGTGAGCCCTACGAAGTCAAGGTCGACGAGTATGAGGATGATCATCCCCGTACATGCACTAGCCGCCGTGACTCTAGACAGCCGAAAGTCTACAAGGTCCGGGTTGATGAGTACGAGGATAACCTCCCTGCACGCTCTCACACTGACTTTCGCGAGTCTCCACGGTCTGAAAGATGCTCTAGCCGCTACACCGAGGACTCGAAGCCTGGGGAGCTTCCTCCCCGCTCAGGGCCCTGTCGGTCCAGCAGGCCTTCTCCGGTCGATGAGGACGTCGAGTATGAGATCCGTGAGCCCCGAGGGCATCGCTCCAGTCGACACTCTACAGATGTTGACTTTCAGCCAGTAGAACAACATCCTCGCTTTGGACAACGTGGACTCAGCAGACCTTCGCGGGTTGATGAGGAAGTCGATTATGAGATCCGTGAGCCCCGTGGCAATCGTGTCAGTCACGCTGCTCATGGTGACAGCCCCTGTCAGGACCAAAGCTCCAGGCATATCGGCATTCAATTGTGGACTGGTGTTCCTGTTTTATCTAGGCAATTGACCCACGCCATCTCGACTCCTGTCAACATGTTCCGTACAGTCGAAGACCGCCCGACCCCAAAAGAGGTATATAACTGGCGGCTGTACACCGAGGCCACCATCATTGCCACTGGTACACTCTTGTTCGGCTATGACTCGGCTTTTGTGGGAACTACCATTGCCCGCCAAAGCTTCGTTGATGCCTTCAACATCGTCGAGTCGGAGGCGGCGGATATTTCAAGCAATATCACGTCAACCTTTCAGGCCGGCGCATTTTTCGGCGCCATCTTCTGCTTCTTGCCTGAAGCAGATGCTGGACGAGCTCTCACCGGCATCGCATGCGGCGCTATCACCGCGACCGTCCCCAGCTATATTGCCGAGCTGTCAATCGTGTCGATCCGGGGCTTCCTCACCGGGTTCTTCGAAGTCGCATACCAGATTGGTAGCTTGGTTGGATTCTGGATCAACTATGGCATTAACGAGAACATGGACAACTCCTCGGCCGCAAGCTGGAGAGTGCCTATGGCAGTCCAGATCATCCCCGCAGGAGTCCTTTTCATTGGTGGCTTTTCCTCCATGAGAGAAGACATCGAGATGAACCGCACCAGGCTGCTGGAGGAAGCTCGGATCGCCGAGAAGTACGGACAAGGTTGGTTGGCATATATCCGAGGCGCACTCTTCGAGCTCTCGCGCCATGGGATGTGGAATCGTGTTCTGCTCGTCCTCTGTGCCTTTGCACTGCAGAATATGTCGGGAGCTGCTGCTATCAACTACTATTCCCCCATACTCTTTGCGTCGTTGGGGATCACTGATGTCGCTCTGTATACAGGTATTTATGGCCTGGTAAAAGCCGTCGCATCAATTATATTCTACGGCATTCTCATTGATATGTGGGGCCGCCGACGTCCGACCATTGTTTCGTCACTGGCCTGCCCTCTATGTCTCTGGTTTGTGGGTGCATACGTCAAAGTTGGGCATCCAGCCGATATCATAGACGCCGGCGGGGAATTGTCCCCCTCCACGGAGGCTGGTGGTAGAGCGGCGACTGCGATGATTATGATCTACTCCGTCTTTTGGTCTTTTGGTCTCAACGGTATCCCCTGGATTGTCTCCGCCGAAATCTTCCCCGGCGCGCTGCGAAATCTCACGGGGACATGGGCTGCGCTGGTGCAATGGTTGATCCAATTCGTTATCACCAAAGCTCTCCCGTACATCTTCAATAGCCTTGGGTACGGGACGTGGTTCTTCTTCGCCTCCTGGATGCTGCTCGCTATCATTTGGTCATTCTTTTTTCTCCCGGAAACCAAGGGGAAGACTCTCGATGAAATGCATACGATCTTTCTTTCAAAAGACGGCACTCACACAATCACACTTCGATGA > 437 AN3199.2 NA hypothetical_protein XP_660803.1 NA MADEKTVQPSAEQEAVGEAEEVRVAHDALNAKYSPLTWSMFRLYLCLIIPYLCGTLNGYDGSLMGGLNAMETYLDFFNMETSGSSTGIVFALYNIGSIPAVFFTGPVNDYWGRRCGMFVGALIIVIGTCIQSPSVNRGMFLAGRFILGFGVSFCCVSAPCYVSEMAHPAWRYAPIFEGLSTKEILTVVSRGTITGLYNCTWYIGSILASWVVYGCSQLDNANSFRIPIWCQLISSALVVLGVWFIPESPRWLMAQDRAEDAAKILTRYHGENDPDHPLVHLQLKEMQQSIATDASDKKWWDYRELYTGHSARRRLICVLGMACFGQISGNSVTSYYLPVMLENAGIVSESRKLLFNGIYPPLSLIGAVVGARMTDTIGRRPLLIYSLLFCSVAFAIITGTSKLATDDPTNTAAANTTIAFIYLFGIVFSFGWTPLQSMYIAETLTTTTRAKGTAVGNLASSIASTIIQYSSGPAFKDIQYYFYLVFVFWDLIEIVIMYFYFPETKDRTLEELEEVFSAPNPVKRSLVKRDAATVLNTMQVEQRELVYIPATMGTTYSRRSEFLWQSLSSANDLRPA bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_655711 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:1731 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107013).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN3199.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Emericella_nidulans_Q5B8D1_EMENI.gb Emericella 67525482 Nature_438_(7071),_1105-1115_(2005) fungi XM_655711 NA NA green_and_blue_molds sac_fungi 16372000 1731 VI mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_655711.1 ATGGCTGACGAGAAGACTGTCCAGCCTTCTGCAGAGCAGGAGGCAGTAGGAGAAGCCGAGGAAGTGAGGGTCGCCCACGATGCGCTCAACGCCAAATACAGCCCCTTGACCTGGTCGATGTTCCGTCTCTACCTGTGTCTTATCATTCCATACCTGTGCGGGACCCTTAATGGATACGACGGCTCCCTCATGGGAGGACTGAACGCGATGGAGACGTACCTGGACTTCTTCAACATGGAGACATCGGGATCCAGCACCGGGATCGTCTTTGCCCTCTACAATATCGGTTCGATTCCAGCCGTCTTCTTCACGGGGCCGGTCAACGACTACTGGGGCCGACGATGCGGCATGTTTGTTGGCGCCCTGATCATCGTTATCGGGACCTGCATCCAAAGTCCGTCTGTAAACAGAGGGATGTTCCTCGCTGGGCGGTTTATCCTTGGATTTGGTGTCAGCTTTTGCTGTGTGTCTGCGCCGTGCTATGTTAGTGAAATGGCACATCCGGCGTGGAGGTATGCACCGATTTTCGAAGGCCTAAGCACGAAGGAGATACTGACGGTTGTTTCTAGAGGCACAATTACGGGGCTCTATAACTGCACCTGGTACATCGGCTCCATCCTCGCTAGCTGGGTTGTTTACGGCTGCTCACAGCTCGACAATGCCAACTCCTTCCGCATCCCGATCTGGTGCCAGCTGATATCGTCCGCCCTTGTCGTGCTCGGAGTCTGGTTTATCCCCGAGTCCCCTCGCTGGCTGATGGCGCAGGACCGTGCAGAAGACGCCGCAAAGATTCTTACCAGATACCACGGGGAGAACGACCCCGATCACCCTCTCGTGCATCTCCAGCTCAAAGAGATGCAGCAGAGCATCGCCACCGATGCATCAGACAAGAAATGGTGGGACTACCGCGAGCTCTACACCGGCCACTCTGCACGTCGCAGGCTCATCTGCGTGCTCGGCATGGCCTGTTTTGGCCAGATCTCCGGCAACAGCGTCACCAGCTACTACCTCCCGGTCATGCTGGAGAACGCCGGTATTGTCAGCGAGAGCAGGAAACTCCTCTTCAACGGCATCTATCCCCCACTCTCGCTCATCGGGGCTGTCGTCGGCGCCCGCATGACAGACACCATCGGCCGACGCCCGCTACTCATCTACTCCCTCCTCTTCTGCTCTGTCGCCTTCGCCATCATCACCGGAACCTCGAAGCTGGCAACCGACGATCCCACCAACACCGCCGCTGCCAACACCACAATCGCCTTCATCTACCTTTTTGGCATCGTCTTCTCCTTTGGCTGGACCCCGCTTCAGTCAATGTACATCGCCGAGACCCTCACAACAACGACCCGCGCCAAGGGCACCGCAGTGGGGAATCTGGCCTCGTCCATCGCGAGCACGATCATCCAGTACAGCTCTGGCCCGGCTTTCAAGGATATTCAGTACTACTTTTACCTCGTCTTTGTGTTCTGGGACCTGATTGAGATCGTCATTATGTACTTCTACTTTCCTGAGACCAAAGACCGCACGCTCGAGGAGCTGGAAGAAGTCTTTTCGGCCCCGAATCCGGTCAAGAGGAGTCTTGTCAAGAGAGATGCGGCGACGGTGTTGAATACGATGCAGGTGGAGCAGCGGGAATTGGTTTACATACCTGCTACTATGGGCACTACTTATTCTCGTCGGTCAGAGTTCTTGTGGCAGTCTCTCAGTAGTGCAAACGATCTTCGACCTGCATGA > 438 AN1830.2 NA hypothetical_protein XP_659434.1 NA MPFLVGKPLSLAITATAGSGFLLFGYDQGVMSGLLTGDAFVRVFPEIDTTVGGHGNSSLQGTVQGCFFGAIMSLLVGERLGRRWCIMAGSVILSIGAVLQATSYGIPQMIVGRIVAGVGNGLNTSTIHYGMSYVNNESQFRFPLALQILFAIVTFLGVLVLPESPRWVLWSVQPNARFINQDDPVINMEMAEITQTMAEERQAAAEGSFKRLLTDGPQRFRHRTLLAMGGQMMQQLSGVNLITYYNTVIFEQSVGMTHNLALLLAGFNGVAYFLSAFVPVWTIDRLGRRKLMLFAAAGQCACMAILAGTVYDGGFSAGIVATVMLFLFNFFFGVGMLAVPWLLPAEYAPLAIRTRTAALATATNWIFTFLVVEITPVSISSIATAHTFTLPSSTFAFCRSFTSSTHFTRNLTLEQIDRLFTGEKVRLHWDASMGVAGDTEHRLQEKMGDAEVQHVE bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_654342 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:1371 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107014).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN1830.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Emericella_nidulans_Q5BCA0_EMENI.gb Emericella 67522746 Nature_438_(7071),_1105-1115_(2005) fungi XM_654342 NA NA green_and_blue_molds sac_fungi 16372000 1371 VII mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_654342.1 ATGCCTTTTCTCGTCGGGAAGCCACTGAGCCTGGCCATCACGGCCACAGCCGGTAGCGGTTTTTTGCTATTCGGATACGACCAAGGTGTCATGTCGGGTCTCCTGACCGGCGATGCTTTTGTCCGGGTATTTCCTGAGATTGACACAACCGTGGGAGGACATGGGAACTCCTCGTTGCAGGGAACAGTACAGGGCTGCTTCTTTGGCGCGATCATGTCCCTCCTTGTTGGCGAGCGGCTCGGCCGACGGTGGTGTATCATGGCGGGTTCAGTGATCCTTTCTATTGGCGCGGTGCTCCAGGCCACCTCGTATGGCATTCCGCAGATGATCGTTGGGCGTATTGTGGCAGGGGTCGGGAATGGGCTCAACACGAGCACTATACACTACGGCATGAGCTACGTCAACAATGAGTCCCAGTTCCGCTTTCCTCTTGCCCTGCAGATCCTCTTTGCCATAGTCACCTTCCTAGGTGTCCTCGTTCTGCCCGAGTCTCCTCGCTGGGTCCTCTGGTCTGTCCAGCCCAATGCCCGATTCATCAACCAAGACGACCCCGTAATCAACATGGAGATGGCGGAGATCACTCAGACCATGGCTGAAGAGCGGCAAGCGGCCGCAGAGGGCTCTTTTAAAAGGCTCCTCACGGACGGACCGCAGCGGTTCCGGCATCGGACACTGTTGGCTATGGGCGGCCAGATGATGCAGCAACTGTCGGGCGTGAACCTCATTACCTACTATAACACCGTGATCTTTGAGCAGTCGGTCGGCATGACGCATAACCTGGCTCTATTGCTTGCTGGGTTCAATGGAGTCGCGTACTTTTTGTCGGCATTTGTGCCTGTTTGGACCATTGACCGACTCGGCCGTCGCAAACTGATGCTCTTTGCTGCTGCTGGGCAGTGCGCCTGCATGGCTATCCTGGCTGGCACCGTCTATGACGGTGGTTTCTCGGCCGGTATTGTGGCCACTGTGATGCTCTTCCTGTTCAACTTTTTCTTCGGAGTGGGAATGCTCGCCGTCCCGTGGCTGCTCCCAGCCGAATATGCTCCGTTGGCCATCCGAACTCGCACCGCTGCGTTGGCGACGGCAACAAATTGGATCTTCACCTTCCTTGTCGTCGAAATCACTCCAGTCAGCATTTCCAGCATCGCTACCGCACATACATTTACTTTGCCGTCTTCAACTTTTGCTTTCTGCCGATCATTTACTTCCTCTACCCACTTTACACGTAATCTCACCCTCGAACAGATCGACCGCCTCTTCACGGGCGAGAAGGTGCGGCTGCACTGGGATGCCTCGATGGGAGTGGCTGGTGATACGGAGCATCGGCTGCAGGAGAAGATGGGAGACGCAGAGGTGCAGCATGTGGAGTGA > 439 AN0013.2 NA hypothetical_protein XP_657617.1 NA MGFSLRPPEQTRKIVPKKPAKGHFFFAHREFARVPWWKRKNMRKLYIYIIILILTNTANGFDGSMMNGLQTLSYWQEYFNHPRGAILGLFNASMSLGSLIGLFFVPYLIDWRGRKIGLVVGCLIMLLAVGLQSGARNFGMFVAARILIGFGDCIVLGSAPLLIAEIAHPQDRAVLVTLSGASYHSGAFIASWVTLGTLEIPSDWSWRLPSLLQAICTIVIVIGVWWMPESPRWLIYRDRHPEALDILVKFHAEGDENDEFVQLEYAEIKAAIALDKQIGHTGWVDFFRSRGNRKRIYLITALGLFSQWSGNGLISYYLKYVMDGVGITNPQTQLGINAGMKTEGLVTNFVFAFFIEKLGRRPMYLVSTIGTCVVFNIWTIVSARYEIAPNKGLGYAFVFFTFLYGLFYDIKSGLMATYTTEILPYGLRAKGFTWLNFCVTGALFFNQYINAIALEALAWKYYIVYCVFLGFEVFVIYSFLIETRYTPMEEIAKYFDGDSAVDVGEVATADMKERGFEMKASNDPTAVHVESRD bitunicate_ascomycetes Aspergillus_nidulans_FGSC_A4 Aspergillus_nidulans_FGSC_A4 XM_652525 NA Galagan,J.E.,_Calvo,S.E.,_Cuomo,C.,_Ma,L.J.,_Wortman,J.R.,_Batzoglou,S.,_Lee,S.I.,_Basturkmen,M.,_Spevak,C.C.,_Clutterbuck,J.,_Kapitonov,V.,_Jurka,J.,_Scazzocchio,C.,_Farman,M.,_Butler,J.,_Purcell,S.,_Harris,S.,_Braus,G.H.,_Draht,O.,_Busch,S.,_DEnfert,C.,_Bouchier,C.,_Goldman,G.H.,_Bell-Pedersen,D.,_Griffiths-Jones,S.,_Doonan,J.H.,_Yu,J.,_Vienken,K.,_Pain,A.,_Freitag,M.,_Selker,E.U.,_Archer,D.B.,_Penalva,M.A.,_Oakley,B.R.,_Momany,M.,_Tanaka,T.,_Kumagai,T.,_Asai,K.,_Machida,M.,_Nierman,W.C.,_Denning,D.W.,_Caddick,M.,_Hynes,M.,_Paoletti,M.,_Fischer,R.,_Miller,B.,_Dyer,P.,_Sachs,M.S.,_Osmani,S.A._and_Birren,B.W. NA 0:1602 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NT_107015).COMPLETENESS:_incomplete_on_both_ends. NA 09-APR-2008 Aspergillus_nidulans_FGSC_A4_hypothetical_protein_AN0013.2_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Emericella_nidulans_Q5BHH5_EMENI.gb Emericella 67515462 Nature_438_(7071),_1105-1115_(2005) fungi XM_652525 NA NA green_and_blue_molds sac_fungi 16372000 1602 VIII mRNA NA FGSC_A4 NA Emericella_nidulans NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 227321 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Emericella Sequencing_of_Aspergillus_nidulans_and_comparative_analysis_with_A._fumigatus_and_A._oryzae NA XM_652525.1 ATGGGGTTCTCTCTGCGCCCCCCAGAGCAGACTCGCAAAATTGTGCCAAAGAAACCTGCGAAGGGGCACTTCTTTTTTGCGCATCGGGAGTTTGCCCGCGTCCCGTGGTGGAAAAGGAAGAATATGCGGAAGCTTTATATCTACATTATCATCCTGATTCTGACCAACACCGCAAATGGATTCGATGGGTCCATGATGAACGGGCTCCAAACGCTCTCCTACTGGCAGGAGTACTTTAACCATCCCCGCGGTGCTATCCTAGGCCTCTTCAATGCGTCCATGAGTCTGGGGTCTCTCATTGGGCTTTTTTTCGTGCCTTACCTGATCGACTGGCGTGGCCGCAAAATTGGTCTTGTCGTTGGCTGTCTTATCATGCTGCTAGCAGTGGGGTTACAGTCGGGAGCAAGGAATTTTGGCATGTTCGTCGCCGCCCGCATCCTGATCGGCTTTGGGGACTGCATTGTGCTTGGTAGTGCGCCCCTTCTGATCGCAGAGATTGCTCATCCTCAAGACCGAGCGGTCTTGGTCACTCTGAGCGGTGCCTCGTATCACTCGGGCGCTTTCATAGCCAGCTGGGTTACGCTTGGGACGCTCGAAATTCCGAGTGACTGGTCCTGGAGGCTTCCCAGCTTGTTGCAGGCGATCTGCACCATTGTCATTGTCATCGGAGTGTGGTGGATGCCGGAAAGCCCCCGTTGGCTGATCTATAGGGACAGACACCCCGAGGCACTCGACATTCTCGTAAAATTTCACGCGGAAGGCGATGAGAACGATGAGTTTGTCCAGCTGGAGTACGCCGAAATCAAGGCCGCGATTGCATTGGACAAGCAGATTGGCCATACCGGCTGGGTGGACTTTTTTAGGTCCCGAGGCAATCGCAAGAGGATTTACCTTATCACTGCTCTTGGTCTCTTCAGTCAGTGGAGTGGCAATGGACTGATCTCGTACTACCTCAAATATGTCATGGACGGCGTCGGGATCACAAATCCCCAGACACAGCTTGGTATCAATGCAGGAATGAAGACTGAGGGCTTAGTTACCAACTTTGTCTTTGCTTTCTTCATTGAGAAGCTAGGAAGACGGCCGATGTACCTGGTCTCCACGATCGGCACCTGTGTCGTGTTCAATATCTGGACAATTGTTTCCGCGCGGTACGAAATTGCACCAAATAAGGGGCTGGGATATGCCTTTGTCTTCTTCACCTTCCTCTACGGCCTTTTCTACGATATCAAGTCGGGTCTCATGGCAACGTACACTACTGAGATTCTCCCGTATGGTCTCCGTGCAAAGGGCTTTACGTGGCTGAACTTTTGCGTCACTGGAGCACTTTTTTTCAACCAGTATATAAATGCCATTGCGCTGGAGGCGTTGGCCTGGAAGTATTATATCGTGTACTGCGTGTTCCTGGGATTTGAAGTCTTTGTGATCTACTCCTTCCTTATTGAGACTCGCTACACACCGATGGAGGAAATCGCTAAGTATTTTGACGGAGATAGCGCCGTGGATGTTGGCGAGGTCGCGACTGCAGATATGAAAGAGAGGGGATTTGAGATGAAGGCGTCCAACGACCCGACTGCTGTCCACGTGGAGAGCAGAGACTAG > 440 Eint_040160 similar_to_ECU04_0210 glucose_transporter_type_3 XP_003072667.1 NA MDVEKSSPVQKSVFYSALMSSASSLLFGMSLTVIGCMYPHVSKRWEETMNKTEVNNLWGITSSNIFLGCLISNVLVNAIRPNMKKALLLNNIFHVTGYIIFLLDQNFKSIFSGRLIIGLGSGITCAIVPIYTSLVSSKESRGFLLSFHPLGICIGITIGNTLSSLNSDSTWRIPLFIALLLVALNFLSLLGIIDPSHQEASSEVSFPSLFKNPRARKSIFLAVLVHISQHLCGVDYITLFLKDLFPVDMYSPEVMTVAISSFSVLVTGLFARYVDFIGRKPLIIASSLISGTATAMLTFNIYPAFATLLFILGYNIGLGPIPWFITAEIFPPEYTNPACLLGVSLNWLSAYGVLAALYPFHLRYGRFVFSFYTFCTILFAGLMALFFTETKNKAPDFQ NA Encephalitozoon_intestinalis_ATCC_50506 Encephalitozoon_intestinalis_ATCC_50506 XM_003072621 NA Corradi,N.,_Pombert,J.-F.,_Farinelli,L.,_Didier,E._and_Keeling,P.J. NA 0:1197 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_014418).Linear_chromosome_is_missing_portions_of_the_telomeric_regions.COMPLETENESS:_incomplete_on_both_ends. NA 18-AUG-2010 Encephalitozoon_intestinalis_ATCC_50506_glucose_transporter_type_3_(Eint_040160)_mRNA,_complete_cds. NA Unikaryonidae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Encephalitozoon_intestinalis_E0S6H2_ENCIT.gb Septata 303388867 Unpublished fungi XM_003072621 NA NA NA microsporidians NA 1197 IV mRNA NA ATCC_50506 NA Septata_intestinalis NA forward NA NA NA NA Apansporoblastina NA NA NA NA NA eukaryotes NA 876142 Eukaryota,_Fungi,_Microsporidia,_Unikaryonidae,_Encephalitozoon The_complete_sequence_of_the_smallest_known_nuclear_genome_from_the_microsporidian_Encephalitozoon_intestinalis NA XM_003072621.1 ATGGATGTGGAAAAATCTTCGCCAGTGCAAAAGTCGGTTTTCTATTCCGCACTGATGTCCTCTGCATCATCTTTACTGTTTGGAATGTCTCTTACAGTAATAGGATGTATGTATCCACATGTTTCAAAAAGATGGGAAGAAACCATGAACAAGACAGAGGTGAATAATCTCTGGGGAATCACCTCAAGCAATATATTCCTTGGGTGTCTGATCTCAAATGTCTTGGTAAATGCTATTAGGCCAAACATGAAAAAAGCTTTGTTACTTAACAACATTTTCCATGTTACAGGATATATCATCTTTCTCCTTGATCAAAATTTCAAATCTATCTTTTCCGGAAGATTGATCATAGGACTTGGCTCAGGAATAACATGTGCAATAGTACCTATATACACCTCACTGGTATCATCAAAAGAGTCCCGAGGTTTTCTGTTATCCTTTCATCCCCTTGGAATATGTATTGGAATAACCATCGGTAATACCCTTTCTTCCCTTAATTCCGACTCCACCTGGAGGATTCCATTGTTTATAGCTTTGTTATTGGTAGCATTGAATTTTCTAAGCTTACTGGGAATAATCGATCCCTCCCATCAAGAGGCTTCTTCGGAGGTATCCTTTCCCAGTCTATTTAAAAATCCCAGAGCAAGAAAGTCCATCTTTCTTGCAGTGCTGGTTCACATCTCCCAGCATCTTTGCGGGGTGGATTATATAACTCTTTTCCTAAAAGATCTTTTTCCTGTAGACATGTATTCTCCAGAAGTAATGACTGTTGCCATCTCCTCGTTTTCGGTTCTTGTAACAGGGCTTTTTGCACGATATGTTGACTTCATTGGGAGGAAGCCTTTAATCATCGCTAGCTCCCTAATTTCTGGTACTGCAACAGCAATGCTTACCTTCAATATATATCCTGCTTTTGCAACGCTTCTGTTTATATTGGGATACAACATCGGTCTCGGCCCCATCCCATGGTTTATAACAGCGGAAATCTTTCCGCCCGAGTATACGAATCCAGCCTGTCTCCTTGGTGTTTCTTTGAACTGGTTATCAGCTTATGGTGTTTTGGCTGCTCTTTATCCATTTCATTTAAGGTACGGAAGATTTGTGTTCTCTTTCTATACGTTTTGCACTATTCTCTTTGCAGGGCTAATGGCCTTATTTTTCACAGAAACTAAGAACAAGGCACCAGATTTTCAGTAA > 441 ENTCAN_07873 KEGG:_rcm:A1E_04550_1.2e-23_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 proline_permease EFC55158.1 11 MLRRKKVKPITLRDVTIIDDAKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSLQMIAALGTFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYASIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVMGAGVVVLISTVVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVEKLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVISTNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMVGMLFVQPIMGLMSDRFGRKPFIILGSVALFALAIPAFILINSNVLGLIFAGLLMLAVILNCFIGVMASTLPAMFPTHIRYSALAAAFNISVLIAGLTPTLAASLVESTQNLMMPAYYLMVIAVIGLITGITMKETANRPLKGATPAASDIAEAKDILREHYDNVEQKIEDIDAEIEELQKKRSRLVDQHPRINE gamma_subgroup Enterobacter_cancerogenus_ATCC_35316 Enterobacter_cancerogenus_ATCC_35316 ABWM02000022 1455..2957 Fulton,L.,_Clifton,S.,_Fulton,B.,_Xu,J.,_Minx,P.,_Pepin,K.H.,_Johnson,M.,_Thiruvilangam,P.,_Bhonagiri,V.,_Nash,W.E.,_Mardis,E.R._and_Wilson,R.K. NA 0:1503 Enterobacter_cancerogenus_(GenBank_Accession_Number_for_16S_rDNAgene:_Z96078,_the_16S_rDNA_gene_of_a_related_strain_of_Enterobactercancerogenus,_not_the_sequenced_strain),_is_a_member_of_theProteobacteria_division_ofthe_domain_bacteria_and_has_been_isolatedfrom_human_feces._The_sequenced_strain_was_obtained_from_ATCC_(ATCC35316).We_have_performed_one_round_of_automated_sequence_improvement(pre-finishing),_along_with_manual_improvement_that_includesbreaking_apart_any_mis-assembly,_and_making_manual_joins_wherepossible._Manual_edits_also_are_made_where_the_consensus_appears_tobe_incorrect._All_low_quality_data_on_the_ends_of_contigs_isremoved._Contigs_are_ordered_and_oriented_where_possible.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.This_work_was_supported_by_the_National_Human_Genome_ResearchInstitute_and_the_NIH_Roadmap_Human_Microbiome_Projecthttp://nihroadmap.nih.gov/hmp/.This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_29.7xSequencing_Technology:_454Annotation_was_added_to_the_contigs_in_January_2010. NA 01-JUN-2010 Enterobacter_cancerogenus_ATCC_35316_E_cancerogenus-1.0.1_Cont1.3,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterobacter_cancerogenus_D2ZH93_9ENTR.gb not_"Enterobacter"_Rahn_1937 260842184 Submitted_(17-SEP-2008)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ABWM02000022 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1503 NA genomic_DNA NA ATCC_35316 NA Erwinia_cancerogena_Urosevic_1966_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 500639 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Enterobacter Direct_Submission NA ABWM02000022.1 TTACTCGTTAATCCGTGGATGTTGATCCACCAGTCGGGAGCGTTTTTTCTGAAGCTCTTCAATCTCTGCATCGATGTCTTCAATCTTCTGCTCTACGTTATCGTAGTGCTCACGCAGGATATCCTTCGCTTCCGCAATATCCGAAGCGGCAGGCGTCGCCCCTTTCAGCGGACGGTTGGCCGTCTCCTTCATGGTGATACCGGTAATCAGACCAATCACCGCAATGACCATCAGATAATAAGCCGGCATCATCAGGTTCTGGGTGCTTTCTACCAGCGAGGCGGCAAGCGTTGGGGTCAGGCCCGCAATCAGAACCGAGATATTAAACGCGGCGGCCAGCGCGCTGTAGCGAATATGCGTCGGGAACATCGCCGGTAGCGTCGACGCCATAACCCCGATAAAGCAGTTAAGGATCACCGCCAGCATCAGCAGCCCGGCAAAAATCAGGCCCAGCACGTTACTGTTAATCAGAATAAACGCGGGGATCGCCAGCGCAAACAGCGCAACGCTACCCAGAATAATAAAGGGCTTACGGCCAAAGCGGTCGCTCATTAACCCCATAATCGGCTGCACGAACAGCATACCGACCATGATGGCGATAATAATCAGCACGCCGTGGTCTTCAGAGTAATGCAGGTTATGCGACAGGTAGCTCGGCATATAGGTGAGCAACATGTAATAGGTCACGTTGGTCGAAATCACCAGACCGATACAGGTCAACAGGCTACGCCAGTGCTTAGTCGCAATCTCTTTAAACGACACTTTCGGGCCGTCCTGCAGACCTTCACGATCGCCCTGCTCCAGCTTCTCAACGTGCTGCTGGAATGCTGGCGTCTCTTCTAATGCATGACGCAGGTAAAGGCCAATGATGCCCAGCGGCAATGCTATAAAGAACGGAATACGCCAGCCCCAGTCGAGGAAGTTCGCCTCACCGACCACGGTGGAGATCAGAACGACCACGCCTGCGCCCATGACAAACCCGGCAATCGAGCCAAAGTCCAGCCAGCTTCCCATAAAGCCACGCTTACGGTCCGGGGAATATTCCGCGACGAAGATCGACGCGCCGGTATATTCACCGCCCACGGAGAAGCCTTGCGCCATTTTACAGAGCAGCAGCAGGATCGGTGCCCAAATACCAATAGAGGCGTAAGACGGAATTAGGCCGATACAGAATGTACTTATCGACATAATCACAATAGTAATAGCAAGGATTTTCTGGCGACCGTATTTGTCACCCAGCATCCCGAAGAACAGGCCGCCCAGCGGGCGAATCAGGAAGGGAACAGAGAACGTACCCAATGCTGCAATCATCTGCAGGCTGGGATCGGCACCGGGGAAGAATACTTTACCTAACGCGTAGGCCACAAAGCCGTAGACACCAAAATCAAACCACTCCATCGCATTACCGAGCGAGGCAGCGGTGATCGCTTTACGCAATTTCGCGTCATCAATAATAGTGACATCGCGAAGCGTGATGGGTTTTACCTTTTTCCTTCTAAGCAT > 442 ECL_02586 NA multidrug_resistance_protein_MdtG YP_003613078.1 11 MPYGALHLIMRIVMSPSDAPINWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMAIIMALMGVAQNVWQFLILRALLGLLGGFIPNANALIATQIPRHKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFIVTLICIRENFTPVAKKEMLHARDVLASLKNPRLVLSLFVTTLIIQVATGSIAPILTLYVRDLAGNVSNIAFISGLIASVPGVAALLSAPRLGKLGDRVGPEKILICALVISVLLLIPMSMVQSPWQLGVLRFLLGAADGALLPAVQTLLVYNSTNQIAGRIFSYNQSFRDIGNVTGPLVGAGISASFGFRAVFIVTAGVVLFNAVYSWFSLSRTLRPVAE gamma_subgroup Enterobacter_cloacae_subsp._cloacae_ATCC_13047 Enterobacter_cloacae_subsp._cloacae_ATCC_13047 NC_014121 2629075..2630331 Ren,Y.,_Ren,Y.,_Zhou,Z.,_Guo,X.,_Li,Y.,_Feng,L._and_Wang,L. NA 0:1257 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001918.COMPLETENESS:_full_length. NA 03-DEC-2011 Enterobacter_cloacae_subsp._cloacae_ATCC_13047_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterobacter_cloacae_D5CD80_ENTCC.gb not_"Enterobacter"_Rahn_1937 296100371 J._Bacteriol._192_(9),_2463-2464_(2010) NA NC_014121 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20207761 1257 NA genomic_DNA 716541 ATCC_13047 NA Enterobacter_hormaechei_subsp._grimontii NA forward NA NA NA NA NA NA Enterobacter_cloacae_subsp._cloacae_(Jordan_1890)_Hormaeche_and_Edwards_1960 NA NA NA prokaryotes NA 716541 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Enterobacter,_Enterobacter_cloacae_complex Complete_genome_sequence_of_Enterobacter_cloacae_subsp._cloacae_type_strain_ATCC_13047 NA NC_014121.1 ATGCCTTACGGTGCGCTGCACCTCATTATGCGGATTGTTATGTCACCCTCAGATGCCCCCATAAACTGGAAACGTAACCTTACGGTTGCCTGGCTTGGCTGTTTTCTTACCGGCGCGGCGTTTAGCCTCGTGATGCCCTTTCTGCCCCTGTACGTTGAACAACTGGGCGTGACGGGCCACAGTGCGCTCAATATGTGGTCTGGTCTGGTGTTCAGCATCACTTTCCTCTTCTCCGCCATTGCTTCGCCGTTCTGGGGCGGCCTTGCCGACCGTAAAGGGCGTAAAATCATGCTGCTGCGCTCGGCGCTGGGAATGGCCATCATCATGGCGTTAATGGGTGTGGCGCAGAACGTCTGGCAGTTTCTGATTTTGCGCGCGCTACTTGGCCTGCTGGGAGGATTTATTCCCAACGCGAATGCGCTGATCGCCACCCAGATCCCGCGTCATAAAAGCGGCTGGGCGCTCGGGACGCTCTCAACCGGAGGCGTCAGCGGCGCCTTGCTGGGGCCTCTGGCGGGCGGCTTGCTGGCGGACAGCTATGGCCTGCGCCCGGTATTTTTCATTACTGCCAGCGTGTTGTTCCTCTGCTTTATCGTTACGCTGATCTGCATTCGTGAAAACTTCACCCCCGTCGCCAAAAAAGAGATGCTCCACGCACGGGATGTGCTGGCTTCACTCAAAAACCCCAGACTGGTACTGAGCCTGTTCGTGACGACACTCATTATTCAGGTCGCGACCGGTTCGATTGCCCCTATTCTGACGCTGTACGTTCGCGATCTGGCAGGTAACGTGAGCAACATTGCGTTTATCAGCGGGCTGATTGCCTCCGTACCCGGCGTGGCGGCGCTGCTTAGCGCCCCGAGGTTAGGGAAACTGGGAGACCGTGTCGGCCCGGAAAAGATCCTGATTTGTGCGCTGGTGATCTCCGTGCTGCTGCTCATTCCCATGTCGATGGTGCAATCACCCTGGCAGCTGGGCGTTCTGCGCTTTTTGCTGGGTGCCGCCGACGGGGCGTTACTGCCCGCCGTTCAGACCCTGCTGGTTTACAACTCTACGAACCAGATCGCCGGGCGTATCTTCAGCTACAACCAGTCATTTCGCGACATCGGCAACGTTACCGGCCCGCTGGTGGGGGCCGGGATCTCCGCCAGCTTCGGTTTTCGCGCCGTATTTATCGTCACGGCGGGCGTAGTACTGTTTAATGCGGTTTACTCGTGGTTCAGTTTATCCCGGACATTACGGCCGGTGGCGGAATAA > 443 ENC_41910 NA metabolite-proton_symporter CBK87356.1 11 MVSSTSPATVRAKAGAIFRVTSGNFLEQFDFFLFGFYATYIAHTFFPASSEFASLMMTFAVFGAGFLMRPIGAIVLGAYIDKVGRRKGLIVTLSIMAAGTFLIVLIPSYQSIGLWAPLLVLTGRLLQGFSAGAELGGVSVYLAEIATPGRKGFYTSWQSGSQQVAIMIAAAMGFALNVVLEESAIREWGWRIPFLFGCLIVPFIFFLRRKLEETEEFSARRHHLAMRQVFTTLLANWPVVVAGMLMVAMTTTAFYLITVYAPTFGKKVLMLSASDSLLVTLLVAVSNFIWLPVGGALSDRFGRKPVLIAMTLLALATSYPALTMLAAAPSFSMMLTVLLWLSFLYGLYNGAMIPALTEIMPAEVRVAGFSLAYSLATAVFGGFTPVISTALIEYTGDKASPGYWMSFAAVCALLATLYLYRRRTLILQTAVKE gamma_subgroup Enterobacter_cloacae_subsp._cloacae_NCTC_9394 Enterobacter_cloacae_subsp._cloacae_NCTC_9394 FP929040 4271546..4272847 Pajon,A.,_Turner,K._and_Parkhill,J. NA 0:1302 This_is_a_reference_genome_for_the_metaHIT_project_DNA_source:Health_Protection_Agencys_National_Collection_of_Type_Cultures_--http://www.hpacultures.org.uk/Sequencing_technology:_454Genome_coverage:_15xAnnotation_was_added_using_ab_initio_prediction_IMG/ER_--http://img.jgi.doe.gov/submit_(Markowitz,_Szeto_et_al._2007). NA 08-FEB-2011 Enterobacter_cloacae_subsp._cloacae_NCTC_9394_draft_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterobacter_cloacae_D6DRU3_ENTCL.gb not_"Enterobacter"_Rahn_1937 295095013 Unpublished NA FP929040 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1302 NA genomic_DNA NA NCTC_9394 NA Enterobacter_hormaechei_subsp._grimontii NA complement NA NA NA NA NA NA Enterobacter_cloacae_subsp._cloacae_(Jordan_1890)_Hormaeche_and_Edwards_1960 NA NA NA prokaryotes NA 718254 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Enterobacter,_Enterobacter_cloacae_complex The_genome_sequence_of_Enterobacter_cloacae_NCTC_9394 NA FP929040.1 TCACTCCTTAACGGCAGTTTGCAGGATTAACGTGCGACGACGATAGAGATAAAGCGTTGCCAGCAGGGCGCAAACGGCGGCAAAGCTCATCCAGTAGCCCGGGGAGGCTTTGTCGCCGGTGTACTCAATTAAGGCAGTCGAAATCACCGGCGTGAAACCGCCAAAGACCGCCGTTGCCAGGCTGTAAGCCAGTGAGAAGCCCGCCACGCGCACCTCTGCTGGCATGATCTCCGTCAGGGCCGGGATCATCGCGCCGTTATACAGGCCGTAGAGGAAAGAGAGCCACAGCAGCACGGTCAGCATCATTGAGAAGCTCGGGGCTGCGGCCAGCATCGTCAGCGCCGGATAGCTGGTCGCCAGCGCCAGCAGCGTCATGGCGATCAGCACTGGTTTACGTCCGAAGCGATCCGACAGCGCGCCGCCCACCGGCAGCCAGATGAAGTTGGACACCGCCACCAGCAGCGTGACAAGAAGACTGTCCGATGCGCTGAGCATCAGGACTTTTTTACCGAAGGTCGGCGCGTAAACGGTGATCAGGTAAAACGCGGTGGTGGTCATCGCCACCATCAGCATGCCCGCGACGACTACCGGCCAGTTGGCGAGCAGCGTTGTGAAGACCTGACGCATTGCCAGATGGTGGCGACGGGCGCTGAATTCCTCGGTCTCTTCCAGCTTGCGGCGCAGGAAAAAGATAAACGGCACAATCAGACAGCCAAACAGGAACGGAATACGCCACCCCCATTCGCGAATGGCACTCTCCTCCAGCACCACATTCAGCGCAAAGCCCATCGCCGCCGCGATCATAATGGCGACCTGCTGGCTACCCGACTGCCAGCTGGTGTAGAAACCCTTGCGGCCCGGCGTGGCGATCTCCGCCAGATAAACCGAAACTCCGCCCAGCTCGGCGCCTGCCGAAAAACCCTGCAACAGGCGGCCGGTCAGCACCAGCAGCGGCGCCCACAGGCCAATGCTCTGATAAGACGGGATCAGCACGATCAGGAAGGTTCCGGCGGCCATAATTGACAGGGTGACGATCAGCCCTTTACGGCGACCCACTTTATCAATGTAAGCCCCCAGCACAATGGCCCCGATCGGACGCATCAGAAAGCCCGCGCCAAAGACGGCGAAGGTCATCATCAGGGACGCAAATTCACTGCTTGCCGGGAAAAAAGTATGGGCGATGTAGGTGGCATAAAAGCCGAACAGAAAGAAGTCGAATTGCTCAAGAAAGTTGCCCGACGTGACGCGGAAAATCGCGCCCGCTTTGGCACGAACCGTTGCAGGTGAGGTTGAGGAAACCAT > 444 HMPREF0864_00043 NA aldose_1-epimerase EFV41715.1 11 MDIYTLETSRFRLRVTPQSAAILSFDDLDGGREILRAYQENTGWHPGESALFPMLPVANRVRDNRFRLGEREVCLPDSSLDPMFFLHGDGWLQRWQLQDLSVNHIALGLRVQHDCGFDYSALLVYRLSNEGLTAHLTLRHCGTEPMLYGLGFHPFFAKTSQTQIQFFSSGYWPEGEKHLPLSWQRNMPDDIDFSCAKVPNNVWMNHGYSGWNGVAHLVTPHQPTVTIRSSVPYLMLFQMPNEPFICLEPQSHPVDAHNMEGQPGLVLLGKGENMELVMGIEV gamma_subgroup Enterobacteriaceae_bacterium_9_2_54FAA Enterobacteriaceae_bacterium_9_2_54FAA ADCU01000001 48283..49713 Ward,D.,_Earl,A.,_Feldgarden,M.,_Young,S.K.,_Gargeya,S.,_Zeng,Q.,_Alvarado,L.,_Berlin,A.,_Bochicchio,J.,_Chapman,S.B.,_Chen,Z.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Howarth,C.,_Mehta,T.,_Neiman,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_White,J.,_Yandava,C.,_Allen-Vercoe,E.,_Ambrose,C.,_Strauss,J.,_Sibley,C.,_Haas,B.,_Nusbaum,C._and_Birren,B. NA 1430:>1431 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Source_DNA_provided_by_Sibley,_C.,_Strauss,_J.C.,_Ambrose,_C.,_andAllen-Vercoe,_E._(Molecular_and_Cellular_Biology,_University_ofGuelph,_Guelph,_Ontario,_N1G_2W1,_Canada).Bacteria_provided_by_Sibley,_C.,_Strauss,_J.C.,_Ambrose,_C.,_andAllen-Vercoe,_E._(Molecular_and_Cellular_Biology,_University_ofGuelph,_Guelph,_Ontario,_N1G_2W1,_Canada).Please_be_aware_that_the_annotation_is_done_automatically_withlittle_or_no_manual_curation.Gene_calling_method:_Glimmer;_Metagene;_PFAM;_BLAST_tonon-redundant_protein_database;_manual_curation.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_v._2.1-PreRelease-4/28/2009Genome_Coverage_::_58xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 04-JAN-2011 Enterobacteriaceae_bacterium_9_2_54FAA_cont1.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterobacteriaceae_bacterium_E5YDS8_9ENTR.gb NA 316920349 Unpublished NA ADCU01000001 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1431 NA genomic_DNA NA 9_2_54FAA NA Enterobacteriaceae_bacterium_9_2_54FAA NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 469613 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae The_Genome_Sequence_of_Enterobacteriaceae_bacterium_strain_9_2_54FAA NA ADCU01000001.1 ATGAAAAACACGCAGAACCATCTCAATATGTCTTATGTCTGGATGATATGTTTGGTTGCCGCCTGTGGTGGGCTACTGTTCGGTTATGACTGGGTAGTGATTGGCGGTGCAAAACCGTTTTACGAAGCCTATTTTGGTATTACCGATCCCGCCCAATCAGGATGGGCGATGAGTTCGGCATTAGCCGGCTGTGTCTTTGGCGCACTGATTTCAGGCTGGTGCGCCGACCGTTTTGGTCGCAAGCTGCCGCTGATTATCTCTGCGGTTTTGTTTTCTGCTTCGGCATGGGGAACCGCGGTTGCGACGGATTTCGACTGGTTCGTGTTTTATCGCATCGTAGGCGGTGTGGGCATTGGCTTAGCCTCTGCGCTGAGCCCGATGTATATCGCCGAAGTTAGCCCTGCGGAAAAACGCGGGAAATTTGTGGCGATTAACCAACTCACGATTGTGATCGGCGTTCTTGCAGCACAGCTGGTAAACCTGATGATTGCAGAGCCGGTTGCCAGTTCGGCAACCATGCAAGATATTCTGCAAAGTTGGAATGGGCAAGCTGGCTGGCGTTGGATGTTTGGCGCAGAGTTGGTTCCGGCTATATTGTTCTTATTGCTGATGTTCTTAGTGCCTGAGTCTCCACGTTGGCTGGCAAAAGCGGGCAAACAGGATAAAGCCGAGCGCATGTTACGCCGAATTGGCAGCGTTGAATATGCACGGGCAACGCTCACCGATATTCGCGCAACGCTAGGGGCTAATACGCAAAAGGTTGCGGCGAGCGAACTGCTCAACCCTCGAGTTAGGCCGATCATTTTGATTGGGATCGTGCTGGCCGTTTTCCAACAGTGGTGCGGGATCAACGTGATCTTCAACTATGCGCAGGAGATCTTCGCTTCGGCCGGTTTTGATATTAACAGCACGTTGAAATCGATAGTGGCGACAGGCCTTATCAACCTGATTTTTACCATCATTGCTTTGCCGCTGGTGGACAAGCTGGGACGGCGCAAATTGATGTTACTCGGTGCTTCAGGGCTGACCGTGATCTATGTTCTGATTGCTGGCGCTTATGCCTTGGGCATCATGGGGCTACCTGTACTGTTGCTGGTTTTAGCCGCCATTGCCATTTATGCACTGACGCTTGCGCCTGTTACTTGGGTGCTATTGTCTGAGATTTTCCCTAATCGCGTGCGCGGCATGGCGATGTCAGTAGGGACGCTGGCGCTTTGGGTTGCCTGTTTCTTGCTTACCTATACCTTCCCTCTATTAAATGCCAGCTTAGGGGCCGCAGGAAGCTTCTTGCTGTATGGCATTATTTGCGCGCTTGGATTCGTGTTCGTATTGCGTAATGTGCCTGAAACCAAAGGTGTCACGCTTGAAGCTTTGGAGCGTCAATTAGCTGGGAGCACGAAACCCGCAGAGCATAATGTGAAGCAAGCATAA > 445 HMPREF9521_01629 NA transporter,_major_facilitator_family_protein EFM76470.1 11 MYELIKSKIFRPRQPWEKNLLVLWFGTFMAGIGFSLVMPFMPLYINTLGTFTHQQLNFWSGITFSSTFLVTTIVSPWWGRLADRKGRKLMLLRASLGMAIVISLMGAVTSVYQLIGLRLLQGVFSGYISNATALVATGTPKEKSGQVLGTLATGSVTGTLLGPLLGGVTASIFGYRPTFFITGTILLLVFVLSLVFVHEEFVPIEKNQAASGKQILKKLEHPHVILGMFITTLIIQASNNSISPIISLYIQQLLGGHGNVTLISGVIASIPGIATLIAAPRFGRLGDRIGSERILTIGLILAIFVYLPMAFVQNVWQLAMLRFLVGISDACLLPAVQTLITRYSPSDAAGRIFSYNQSFQATGNVIGPMIGSSVSAAFGYRGVFISTSCLVLLNLLWVRRSTAELKKEKNDD Bacillus/Lactobacillus/Streptococcus_group Enterococcus_faecalis_TX2134 Enterococcus_faecalis_TX2134 AEBW01000053 104946..106184 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1239 Enterococcus_faecalis_TX_2134_(No_16S_rRNA_gene_available)_is_amember_of_the_Firmicutes_division_of_the_domain_bacteria_and_regionof_isolation_is_GI_tract.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_and_source_DNA_were_provided_by_Professor_Barbara_E.Murray,_M.D._(Director,_Division_of_Infectious_Diseases,_Departmentof_Internal_Medicine,_University_of_Texas_Medical_School_atHouston,_MSB_2.112,_6431_Fannin_St,_Houston,_TX_77030,_USA)._Fundedby_the_NIH_grant_R01_AI067861_and_R37_AI47923_from_the_Division_ofMicrobiology_and_Infectious_Diseases,_NIAID.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_is_funding_the_sequence_characterizationof_the_Enterococcus_faecalis_TX_2134_genome.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_69.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-SEP-2010 Enterococcus_faecalis_TX2134_E_faecalisTX2134-1.0_Cont122.1,_whole_genome_shotgun_sequence. NA Enterococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterococcus_faecalis_E0GLT9_ENTFA.gb Enterococcus_(ex_Thiercelin_and_Jouhaud_1903)_Schleifer_and_Kilpper-Balz_1984 306507215 Submitted_(30-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA AEBW01000053 NA NA Lactobacillales low_GC_Gram+ NA 1239 NA genomic_DNA NA TX2134 NA Streptococcus_liquefaciens NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749518 Bacteria,_Firmicutes,_Lactobacillales,_Enterococcaceae,_Enterococcus Direct_Submission NA AEBW01000053.1 ATGTATGAATTAATTAAAAGTAAAATTTTCCGTCCAAGACAACCTTGGGAAAAAAATCTGCTTGTTTTATGGTTTGGCACATTTATGGCTGGTATTGGCTTTAGCTTAGTGATGCCATTCATGCCTCTTTATATCAACACATTAGGTACTTTTACCCACCAACAATTGAATTTTTGGAGCGGAATCACGTTCTCCTCCACTTTTTTAGTCACGACCATTGTTTCTCCTTGGTGGGGCCGTTTAGCCGACCGAAAAGGACGCAAGTTAATGTTATTACGTGCTTCATTAGGGATGGCTATCGTCATTAGTTTAATGGGCGCAGTCACAAGTGTTTATCAATTGATTGGCTTGCGCTTATTACAAGGTGTTTTTTCTGGTTATATCAGTAATGCGACTGCGTTAGTTGCTACAGGCACACCTAAGGAAAAAAGCGGTCAAGTGCTTGGTACTTTAGCCACTGGTTCTGTTACCGGCACGTTGCTTGGTCCTCTTTTGGGCGGTGTCACTGCGTCTATTTTCGGTTATCGGCCAACCTTTTTCATTACTGGTACGATTTTATTACTCGTTTTTGTTTTGAGTCTCGTCTTTGTCCATGAAGAGTTTGTGCCAATTGAAAAAAATCAAGCCGCATCTGGGAAACAAATTTTAAAAAAACTAGAACATCCCCACGTGATTCTTGGAATGTTTATTACGACATTAATCATTCAAGCTTCCAATAATTCAATTAGTCCCATCATCAGTTTATATATTCAACAATTGTTGGGTGGTCACGGAAATGTCACCTTAATTAGCGGAGTCATTGCTTCTATTCCAGGGATTGCAACGTTAATAGCCGCCCCTCGTTTCGGCCGGTTAGGCGATCGTATTGGCAGTGAACGCATCTTGACAATTGGCTTAATTTTAGCCATTTTCGTTTACCTACCAATGGCCTTTGTTCAAAATGTCTGGCAGCTTGCCATGCTTCGTTTCTTAGTTGGGATTTCCGATGCCTGTTTACTACCAGCTGTTCAAACGTTGATCACTCGTTATTCCCCAAGTGACGCTGCAGGTCGTATTTTCAGTTACAATCAATCTTTCCAAGCGACAGGAAATGTGATTGGTCCTATGATTGGTTCAAGCGTATCTGCCGCTTTCGGTTATCGTGGGGTCTTTATTTCCACTTCTTGTCTGGTTCTCCTTAACCTTCTATGGGTTCGTCGAAGCACCGCCGAATTAAAAAAAGAGAAAAATGATGACTAA > 446 HMPREF9497_01150 KEGG:_dme:Dmel_CG3168_1.4e-08_CG3168_gene_product_from_transcript_CG3168-RC_K06258;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFT92007.1 11 MKIKWKQNLLVAWIGCFFTGASISLVMPFIPVYVEQLGTPKSQVELFSGLAISVTAFAAAIVAPIWGNLADRKGRKIMMIRAAAGMTITMGALAFVPNVYWLLIMRFMNGILSGYIPNATAMIASQAPKEKNGWALGTLSTGAIAGTLIAPSIGGALAQWFGMENVFIITGVILFITTLLTIFLVKEDFQPVEKKDLLTTKEIFSKMDHVSVLIGLFVTTLILQLGITSISPILTLYIRSLSGDTENVLFVSGLIVSIAGVSAIISSPTLGKIGDRIGNQKVLLGGLILSFICYIPMAFVQTPFQLGVLRFLLGFSTGALMPSINTLISKITPTEGVSRVYSYNQMCSNFGQVLGPMVGSTVAHGFGYSSVFLVTACFVLGNIGLSFFNFRKVLNKKL Bacillus/Lactobacillus/Streptococcus_group Enterococcus_faecalis_TX4244 Enterococcus_faecalis_TX4244 AEBH01000025 75474..76670 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1197 Enterococcus_faecalis_TX_4244_(No_16S_rRNA_gene_available)_is_amember_of_the_Firmicutes_division_of_the_domain_bacteria_and_regionof_isolation_is_GI_tract.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_and_source_DNA_were_provided_by_Professor_Barbara_E.Murray,_M.D._(Director,_Division_of_Infectious_Diseases,_Departmentof_Internal_Medicine,_University_of_Texas_Medical_School_atHouston,_MSB_2.112,_6431_Fannin_St,_Houston,_TX_77030,_USA)._Fundedby_the_NIH_grant_R01_AI067861_and_R37_AI47923_from_the_Division_ofMicrobiology_and_Infectious_Diseases,_NIAID.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_is_funding_the_sequence_characterizationof_the_Enterococcus_faecalis_TX_4244_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_87.3xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 17-DEC-2010 Enterococcus_faecalis_TX4244_E_faecalisTX4244-1.0_Cont72.2,_whole_genome_shotgun_sequence. NA Enterococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterococcus_faecalis_E6FE35_ENTFA.gb Enterococcus_(ex_Thiercelin_and_Jouhaud_1903)_Schleifer_and_Kilpper-Balz_1984 305390677 Submitted_(09-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA AEBH01000025 NA NA Lactobacillales low_GC_Gram+ NA 1197 NA genomic_DNA NA TX4244 NA Streptococcus_liquefaciens NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749494 Bacteria,_Firmicutes,_Lactobacillales,_Enterococcaceae,_Enterococcus Direct_Submission NA AEBH01000025.1 ATGAAAATAAAATGGAAGCAGAATTTGTTAGTCGCATGGATTGGTTGCTTTTTTACAGGGGCGAGTATTAGCTTAGTTATGCCGTTTATTCCAGTATATGTTGAACAATTAGGGACGCCTAAGAGTCAAGTAGAGTTGTTTTCTGGATTGGCAATTTCTGTCACGGCGTTTGCTGCTGCGATTGTTGCACCGATTTGGGGAAATTTAGCTGATCGAAAAGGTCGGAAAATTATGATGATTCGGGCTGCAGCAGGAATGACGATCACAATGGGGGCGTTAGCGTTTGTCCCTAATGTATACTGGCTGCTGATTATGCGTTTTATGAACGGGATTTTATCCGGCTATATTCCTAACGCAACAGCGATGATTGCGTCGCAGGCGCCAAAAGAGAAAAATGGCTGGGCTCTAGGAACATTATCAACAGGTGCAATTGCTGGGACGTTAATTGCGCCATCGATTGGCGGTGCGTTGGCACAGTGGTTTGGAATGGAAAATGTCTTTATTATTACCGGTGTTATTTTATTCATTACAACGTTGTTGACTATCTTTTTAGTTAAAGAAGATTTTCAACCAGTTGAGAAAAAGGATTTATTAACGACGAAAGAAATTTTTAGTAAGATGGATCATGTTTCAGTATTGATTGGTTTGTTTGTGACTACGTTAATTTTACAATTAGGAATTACAAGTATCAGCCCAATCTTAACGCTATATATTCGATCTTTAAGTGGCGATACAGAGAATGTATTATTTGTTAGTGGTTTGATTGTTTCGATTGCCGGCGTTTCAGCAATTATTTCTTCTCCAACTTTGGGAAAAATTGGGGACCGCATTGGGAACCAAAAAGTTTTATTAGGCGGATTAATTCTTTCTTTTATTTGTTACATTCCCATGGCGTTTGTGCAAACACCTTTTCAGTTAGGTGTTTTACGATTCCTTTTAGGTTTTTCAACAGGTGCTTTAATGCCATCAATTAATACGTTAATTAGTAAAATAACGCCAACGGAGGGCGTAAGTAGAGTTTATAGTTACAATCAGATGTGTAGTAATTTCGGTCAAGTTTTAGGACCGATGGTAGGGTCAACAGTTGCCCATGGTTTTGGCTATTCTTCTGTTTTTCTGGTAACCGCTTGTTTCGTTTTAGGAAACATTGGGTTGTCCTTCTTTAATTTCCGAAAAGTTTTAAATAAAAAGCTCTAA > 447 HMPREF9519_01681 KEGG:_dme:Dmel_CG3168_1.4e-08_CG3168_gene_product_from_transcript_CG3168-RC_K06258;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFU17346.1 11 MKIKWKQNLLVAWIGCFFTGASISLVMPFIPVYVEQLGTPKSQVELFSGLAISVTAFAAAIVAPIWGNLADRKGRKIMMIRAAAGMTITMGALAFVPNVYWLLIMRFMNGILSGYIPNATAMIASQAPKEKNGWALGTLSTGAIAGTLIAPSIGGALAQWFGMENVFIITGVILFITTLLTIFLVKEDFQPVEKKDLLTTKEIFSKMDHVSVLIGLFVTTLILQLGITSISPILTLYIRSLSGDTENVLFVSGLIVSIAGVSAIISSPTLGKIGDRIGNQKVLLGGLILSFICYIPMAFVQTPFQLGVLRFLLGFSTGALMPSINTLISKITPTEGVSRVYSYNQMCSNFGQVLGPMVGSTVAHGFGYSSVFLVTACFVLGNIGLSFFNFRKVLNKKL Bacillus/Lactobacillus/Streptococcus_group Enterococcus_faecalis_TX1346 Enterococcus_faecalis_TX1346 AEBI01000048 12271..13467 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1197 Enterococcus_faecalis_TX1346_(No_16S_rRNA_gene_available)_is_amember_of_the_Firmicutes_division_of_the_domain_bacteria_and_regionof_isolation_is_GI_tract.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_and_source_DNA_were_provided_by_Professor_Barbara_E.Murray,_M.D._(Director,_Division_of_Infectious_Diseases,_Departmentof_Internal_Medicine,_University_of_Texas_Medical_School_atHouston,_MSB_2.112,_6431_Fannin_St,_Houston,_TX_77030,_USA)._Fundedby_the_NIH_grant_R01_AI067861_and_R37_AI47923_from_the_Division_ofMicrobiology_and_Infectious_Diseases,_NIAID.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_is_funding_the_sequence_characterizationof_the_Enterococcus_faecalis_TX1346_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_76.9xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 17-DEC-2010 Enterococcus_faecalis_TX1346_E_faecalisTX1346-1.0_Cont501.1,_whole_genome_shotgun_sequence. NA Enterococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterococcus_faecalis_E6FNU8_ENTFA.gb Enterococcus_(ex_Thiercelin_and_Jouhaud_1903)_Schleifer_and_Kilpper-Balz_1984 305390770 Submitted_(09-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA AEBI01000048 NA NA Lactobacillales low_GC_Gram+ NA 1197 NA genomic_DNA NA TX1346 NA Streptococcus_liquefaciens NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749516 Bacteria,_Firmicutes,_Lactobacillales,_Enterococcaceae,_Enterococcus Direct_Submission NA AEBI01000048.1 TTAGAGCTTTTTATTTAAAACTTTTCGGAAATTAAAGAAGGACAACCCAATGTTTCCTAAAACGAAACAAGCGGTTACCAGAAAAACAGAAGAATAGCCAAAACCATGGGCAACTGTTGACCCTACCATCGGCCCTAAAACTTGACCGAAATTACTACACATCTGATTGTAACTATAAACTCTACTTACGCCCTCCGTTGGCGTTATTTTACTAATTAACGTATTAATTGATGGCATTAAAGCGCCTGTTGAAAAACCTAAAAGGAATCGCAAAACGCCTAACTGAAAAGGTGTTTGCACAAACGCCATGGGAATGTAACAAATAAAAGAAAGAATTAATCCGCCTAATAAAACTTTTTGGTTCCCAATGCGGTCCCCAATTTTTCCCAAAGTTGGAGAAGAAATAATTGCTGAAACGCCGGCAATCGAAACAATCAAACCACTAACAAATAATACATTCTCTGTATCGCCACTTAAAGATCGAATATATAGCGTTAAGATTGGGCTGATACTTGTAATTCCTAATTGTAAAATTAACGTAGTCACAAACAAACCAATCAATACTGAAACATGATCCATCTTACTAAAAATTTCTTTCGTCGTTAATAAATCCTTTTTCTCAACTGGTTGAAAATCTTCTTTAACTAAAAAGATAGTCAACAACGTTGTAATGAATAAAATAACGCCGGTAATAATAAAGACATTTTCCATTCCAAACCACTGTGCCAACGCACCGCCAATCGATGGCGCAATTAACGTCCCAGCAATTGCACCTGTTGATAATGTCCCTAGAGCCCAGCCATTTTTCTCTTTTGGCGCCTGCGATGCAATCATCGCTGTTGCGTTAGGAATATAGCCGGATAAAATCCCGTTCATAAAACGCATAATCAACAGCCAGTATACATTAGGGACAAATGCTAACGCCCCCATTGTGATCGTCATTCCTGCTGCAGCCCGAATCATCATAATTTTCCGACCTTTTCGATCAGCTAAATTTCCCCAAATCGGTGCAACAATCGCAGCAGCAAACGCCGTGACAGAAATTGCCAATCCAGAAAACAACTCTACTTGACTCTTAGGCGTCCCTAATTGTTCAACATATACTGGAATAAACGGCATAACTAAGCTAATACTCGCCCCTGTAAAAAAGCAACCAATCCATGCGACTAATAAATTCTGCTTCCATTTTATTTTCAT > 448 HMPREF9518_00543 KEGG:_efe:EFER_2667_2.5e-06_hexuronate_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFU15637.1 11 MYELIKSKIFRPRQPWEKNLLVLWFGTFMAGIGFSLVMPFMPLYINTLGTFTHQQLNFWSGITFSSTFLVTTIVSPWWGRLADRKGRKLMLLRASLGMAIVISLMGAVTSVYQLIGLRLLQGVFSGYISNATALVATGTPKEKSGQVLGTLATGSVTGTLLGPLLGGVTASIFGYRPTFFITGTILLLVFVLSLVFVHEEFVPIEKNQAASGKQILKKLEHPHVILGMFITTLIIQASNNSISPIISLYIQQLLGGHGNVTLISGVIASIPGIATLIAAPRFGRLGDRIGSERILTIGLILAIFVYLPMAFVQNVWQLAMLRFLVGISDACLLPAVQTLITRYSPSDAAGRIFSYNQSFQATGNVIGPMIGSSVSAAFGYRGVFISTSCLVLLNLLWVRRSTAELKKEKNDD Bacillus/Lactobacillus/Streptococcus_group Enterococcus_faecalis_TX1342 Enterococcus_faecalis_TX1342 AEBJ01000009 49057..50295 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1239 Enterococcus_faecalis_TX1342_(No_16S_rRNA_gene_available)_is_amember_of_the_Firmicutes_division_of_the_domain_bacteria_and_regionof_isolation_is_GI_tract.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_and_source_DNA_were_provided_by_Professor_Barbara_E.Murray,_M.D._(Director,_Division_of_Infectious_Diseases,_Departmentof_Internal_Medicine,_University_of_Texas_Medical_School_atHouston,_MSB_2.112,_6431_Fannin_St,_Houston,_TX_77030,_USA)._Fundedby_the_NIH_grant_R01_AI067861_and_R37_AI47923_from_the_Division_ofMicrobiology_and_Infectious_Diseases,_NIAID.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_is_funding_the_sequence_characterizationof_the_Enterococcus_faecalis_TX1342_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_76.1xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 17-DEC-2010 Enterococcus_faecalis_TX1342_E_faecalisTX1342-1.0_Cont54.1,_whole_genome_shotgun_sequence. NA Enterococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterococcus_faecalis_E6FTQ3_ENTFA.gb Enterococcus_(ex_Thiercelin_and_Jouhaud_1903)_Schleifer_and_Kilpper-Balz_1984 305390855 Submitted_(09-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA AEBJ01000009 NA NA Lactobacillales low_GC_Gram+ NA 1239 NA genomic_DNA NA TX1342 NA Streptococcus_liquefaciens NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749515 Bacteria,_Firmicutes,_Lactobacillales,_Enterococcaceae,_Enterococcus Direct_Submission NA AEBJ01000009.1 TTAGTCATCATTTTTCTCTTTTTTTAATTCGGCGGTGCTTCGACGAACCCATAGAAGGTTAAGGAGAACCAGACAAGAAGTGGAAATAAAGACTCCACGATAACCGAAAGCGGCAGATACGCTTGAACCAATCATAGGACCAATCACATTTCCTGTCGCTTGGAAAGATTGATTGTAACTGAAAATACGACCTGCAGCGTCACTTGGGGAATAACGAGTGATCAACGTTTGAACAGCTGGTAGTAAACAGGCATCGGAAATCCCAACTAAGAAACGAAGCATGGCAAGCTGCCAGACATTTTGAACAAAGGCCATTGGTAGGTAAACGAAAATGGCTAAAATTAAGCCAATTGTCAAGATGCGTTCACTGCCAATACGATCGCCTAACCGGCCGAAACGAGGGGCGGCTATTAACGTTGCAATCCCTGGAATAGAAGCAATGACTCCGCTAATTAAGGTGACATTTCCGTGACCACCCAACAATTGTTGAATATATAAACTGATGATGGGACTAATTGAATTATTGGAAGCTTGAATGATTAATGTCGTAATAAACATTCCAAGAATCACGTGGGGATGTTCTAGTTTTTTTAAAATTTGTTTCCCAGATGCGGCTTGATTTTTTTCAATTGGCACAAACTCTTCATGGACAAAGACGAGACTCAAAACAAAAACGAGTAATAAAATCGTACCAGTAATGAAAAAGGTTGGCCGATAACCGAAAATAGACGCAGTGACACCGCCCAAAAGAGGACCAAGCAACGTGCCGGTAACAGAACCAGTGGCTAAAGTACCAAGCACTTGGCCGCTTTTTTCCTTAGGTGTGCCTGTAGCAACTAACGCAGTCGCATTACTGATATAACCAGAAAAAACACCTTGTAATAAGCGTAAGCCAATCAATTGATAAACACTTGTGACTGCGCCCATTAAACTAATGACGATAGCCATCCCTAATGAAGCACGTAATAACATTAACTTGCGTCCTTTTCGGTCGGCTAAACGGCCCCACCAAGGAGAAACAATGGTCGTGACTAAAAAAGTGGAGGAGAACGTGATTCCGCTCCAAAAATTCAATTGTTGGTGGGTAAAAGTACCTAATGTGTTGATATAAAGAGGCATGAATGGCATCACTAAGCTAAAGCCAATACCAGCCATAAATGTGCCAAACCATAAAACAAGCAGATTTTTTTCCCAAGGTTGTCTTGGACGGAAAATTTTACTTTTAATTAATTCATACAT > 449 HMPREF9503_00589 KEGG:_dme:Dmel_CG3168_1.4e-08_CG3168_gene_product_from_transcript_CG3168-RC_K06258;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFU00907.1 11 MKIKWKQNLLVAWIGCFFTGASISLVMPFIPVYVEQLGTPKSQVELFSGLAISVTAFAAAIVAPIWGNLADRKGRKIMMIRAAAGMTITMGALAFVPNVYWLLIMRFMNGILSGYIPNATAMIASQAPKEKNGWALGTLSTGAIAGTLIAPSIGGALAQWFGMENVFIITGVILFITTLLTIFLVKEDFQPVEKKDLLTTKEIFSKMDHVSVLIGLFVTTLILQLGITSISPILTLYIRSLSGDTENVLFVSGLIVSIAGVSAIISSPTLGKIGDRIGNQKVLLGGLILSFICYIPMAFVQTPFQLGVLRFLLGFSTGALMPSINTLISKITPTEGVSRVYSYNQMCSNFGQVLGPMVGSTVAHGFGYSSVFLVTACFVLGNIGLSFFNFRKVLNKKL Bacillus/Lactobacillus/Streptococcus_group Enterococcus_faecalis_TX0043 Enterococcus_faecalis_TX0043 AEBL01000012 70836..72032 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1197 Enterococcus_faecalis_TX0043_(No_16S_rRNA_gene_available)_is_amember_of_the_Firmicutes_division_of_the_domain_bacteria_and_regionof_isolation_is_Blood.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_and_source_DNA_were_provided_by_Professor_Barbara_E.Murray,_M.D._(Director,_Division_of_Infectious_Diseases,_Departmentof_Internal_Medicine,_University_of_Texas_Medical_School_atHouston,_MSB_2.112,_6431_Fannin_St,_Houston,_TX_77030,_USA)._Fundedby_the_NIH_grant_R01_AI067861_and_R37_AI47923_from_the_Division_ofMicrobiology_and_Infectious_Diseases,_NIAID.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_is_funding_the_sequence_characterizationof_the_Enterococcus_faecalis_TX0043_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_76.5xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 17-DEC-2010 Enterococcus_faecalis_TX0043_E_faecalisTX0043-1.0_Cont24.1,_whole_genome_shotgun_sequence. NA Enterococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterococcus_faecalis_E6G9Z4_ENTFA.gb Enterococcus_(ex_Thiercelin_and_Jouhaud_1903)_Schleifer_and_Kilpper-Balz_1984 305434271 Submitted_(09-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA AEBL01000012 NA NA Lactobacillales low_GC_Gram+ NA 1197 NA genomic_DNA NA TX0043 NA Streptococcus_liquefaciens NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749500 Bacteria,_Firmicutes,_Lactobacillales,_Enterococcaceae,_Enterococcus Direct_Submission NA AEBL01000012.1 ATGAAAATAAAATGGAAGCAGAATTTGTTAGTCGCATGGATTGGTTGCTTTTTTACAGGGGCGAGTATTAGCTTAGTTATGCCGTTTATTCCAGTATACGTTGAACAATTAGGGACGCCTAAGAGTCAAGTAGAGTTGTTTTCTGGATTGGCAATTTCTGTCACGGCGTTTGCTGCTGCGATTGTTGCACCGATTTGGGGAAATTTAGCTGATCGAAAAGGTCGGAAAATTATGATGATTCGGGCTGCAGCAGGAATGACGATCACAATGGGGGCGTTAGCATTTGTCCCTAATGTATACTGGCTGTTGATTATGCGTTTTATGAACGGGATTTTATCCGGCTATATTCCTAACGCAACAGCGATGATTGCATCGCAGGCGCCAAAAGAGAAAAATGGCTGGGCTCTAGGGACATTATCAACAGGTGCAATTGCTGGGACGTTAATTGCGCCATCAATTGGCGGTGCGTTGGCACAGTGGTTTGGAATGGAAAATGTCTTTATTATTACCGGCGTTATTTTATTCATTACAACGTTGTTGACTATCTTTTTAGTTAAAGAAGATTTTCAACCAGTTGAGAAAAAGGATTTATTAACGACTAAAGAAATTTTTAGTAAGATGGATCATGTTTCAGTATTGATTGGTTTGTTTGTGACTACGTTAATTTTACAATTAGGAATTACAAGTATCAGCCCAATCTTAACGCTATATATTCGATCTTTAAGTGGCGATACAGAGAATGTATTATTTGTTAGTGGTTTGATTGTTTCGATTGCCGGCGTTTCAGCAATTATTTCTTCTCCAACTTTGGGAAAAATTGGGGACCGCATTGGGAACCAAAAAGTTTTATTAGGCGGATTAATTCTTTCTTTTATTTGTTACATTCCCATGGCGTTTGTGCAAACACCTTTTCAGTTAGGTGTTTTACGATTCCTTTTAGGTTTTTCAACAGGTGCTTTAATGCCATCAATCAATACGTTAATTAGTAAAATAACGCCAACGGAGGGCGTAAGTAGAGTTTATAGTTACAATCAGATGTGTAGTAATTTCGGTCAAGTTTTAGGACCGATGGTAGGGTCGACAGTTGCCCATGGTTTTGGCTATTCTTCTGTTTTTCTGGTAACCGCTTGTTTCGTTTTAGGAAACATTGGGTTGTCCTTCTTTAATTTCCGAAAAGTTTTAAATAAAAAGCTCTAA > 450 EFWG_02034 NA sugar_transporter EEV62672.1 11 MKKEKKVSSSFIYFFGAFGGILFGYDIGVMTGALPFLQHDWGLAGKASLIGWITSSVMLGAILGGSLSGLLSDKLGRRKMILLSALIFMAGSVLSASAPHNGSYFLIAARILLGLAVGAASALVPAYMSEMAPARLRGRLSGINQVMIASGMLLSYVADYLLKGLPETMAWRVMLGLAAVPALILFFGVLALPESPRFLVQSGRLEEAKRVLNYIRTPNEAEQEFEQIQLNVKQEKTTVTSWHTLFLEKYRSLVIAGIGVAVFQQFQGANAIFYYIPLIVEKATGHAASDALMWPIIQGIILVAGSLLFLVIADKFNRRTLLKIGGSVMGLSFILPAVLGTVLDAHTNSLLILLFLCIYVAFYSCTWAPLTWVIVGEIFPLAVRGRASGLASSFNWIGSFLVGLLFPVMTASMSQEIVFGIFGIICFLGVLFIQEIVPETRGKSLEEIEQSASKKTYPKRISIHHS Bacillus/Lactobacillus/Streptococcus_group Enterococcus_faecium_Com15 Enterococcus_faecium_Com15 GG670328 148935..150335 Feldgarden,M.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Gilmore,M.,_Manson,J.,_Palmer,K.,_Carniol,K.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1401 Genome_Coverage:_27.94X. NA 11-SEP-2009 Enterococcus_faecium_Com15_genomic_scaffold_supercont1.4,_whole_genome_shotgun_sequence. NA Enterococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterococcus_faecium_C9ART4_ENTFC.gb Enterococcus_(ex_Thiercelin_and_Jouhaud_1903)_Schleifer_and_Kilpper-Balz_1984 238928296 Unpublished NA GG670328 NA NA Lactobacillales low_GC_Gram+ NA 1401 NA genomic_DNA NA Com15 NA Streptococcus_faecium_Orla-Jensen_1919_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 565663 Bacteria,_Firmicutes,_Lactobacillales,_Enterococcaceae,_Enterococcus The_Genome_Sequence_of_Enterococcus_faecium_strain_Com15 NA GG670328.1 TTAAGAATGATGGATAGAAATACGTTTAGGATAAGTTTTTTTAGATGCACTTTGTTCGATTTCCTCTAAAGATTTCCCACGAGTCTCTGGTACGATCTCTTGAATAAATAAAACCCCTAAAAAGCAGATGATCCCAAAAATACCGAAAACGATTTCTTGAGACATAGAAGCAGTCATCACAGGAAAAAGCAAGCCGACTAGGAAAGAACCAATCCAATTGAAAGAAGAGGCCAGGCCAGATGCTCGCCCGCGGACAGCTAGTGGGAATATTTCGCCTACGATTACCCATGTCAGTGGAGCCCATGTGCAAGAATAAAATGCGACATAAATACATAAAAACAAGAGAATCAACAACGAATTTGTATGAGCATCCAGTACAGTTCCTAAAACAGCTGGTAGGATGAAAGAAAGTCCCATCACGCTACCGCCTATTTTCAATAAAGTTCGCCGATTGAACTTGTCTGCAATAACCAAAAAGAGCAAAGAACCAGCAACTAAAATGATTCCTTGGATGATCGGCCACATCAATGCATCGCTCGCTGCATGCCCAGTCGCTTTTTCTACGATCAGTGGAATATAGTAAAAAATAGCATTAGCTCCTTGAAATTGCTGGAATACTGCTACACCAATACCGGCAATAACTAACGAACGATACTTTTCTAAAAATAAAGTATGCCAAGAAGTTACGGTTGTCTTTTCTTGTTTGACATTCAGCTGGATTTGTTCGAATTCCTGTTCAGCTTCGTTTGGTGTCCGAATATAGTTCAATACTCTTTTTGCCTCTTCCAAGCGACCAGATTGCACAAGAAAACGCGGTGACTCTGGTAGAGCTAAAACGCCGAAAAATAAAATCAGTGCAGGGACAGCAGCGAGTCCTAACATCACGCGCCAAGCCATCGTTTCAGGTAACCCTTTTAGCAAATAATCTGCAACATAGGAAAGGAGCATGCCAGAAGCAATCATCACTTGATTGATCCCTGACAATCTTCCCCTTAGTCTAGCAGGAGCCATTTCAGACATATAAGCAGGAACTAGGGCAGATGCAGCGCCAACAGCTAAACCTAGAAGAATCCTTGCTGCAATCAGAAAATAAGAACCATTGTGAGGGGCAGATGCAGAAAGGACAGAACCAGCCATAAAAATAAGTGCAGAAAGAAGAATCATTTTTCGTCGTCCAAGCTTATCAGAAAGAAGACCAGATAAAGAGCCACCAAGGATCGCACCTAACATGACCGAAGACGTGATCCATCCTATCAAAGAAGCCTTACCCGCCAAACCCCAATCATGTTGTAAAAAAGGTAAAGCGCCGGTCATAACACCAATATCATATCCAAATAGAATGCCGCCAAATGCGCCAAAAAAATAAATAAACGATGAGGAAACTTTTTTTTCTTTTTTCAT > 451 EFXG_02040 NA sugar_transporter EEW62039.1 11 MKKEKKVSSSFIYFFGAFGGILFGYDIGVMTGALPFLQHDWGLAGKASLIGWITSSVMLGAILGGSLSGLLSDKLGRRKMILLSALIFMAGSVLSASAPHNGSYFLIAARILLGLAVGAASALVPAYMSEMAPARLRGRLSGINQVMIASGMLLSYVADYLLKGLPETMAWRVMLGLAAVPALILFFGVLALPESPRFLMQSGRLEEAKRVLNYIRTPKEAEQEFEQIQLNVKQEKTTGTSWHTLFLEKYRSLVIAGIGVAVFQQFQGANAIFYYIPLIVEKATGHAASDALMWPIIQGIILVAGSLLFLVIADKFNRRTLLKIGGSVMGLSFILPAVLGTVLDAHTNSLLILLFLCIYVAFYSCTWAPLTWVIVGEIFPLAVRGRASGLASSFNWIGSFLVGLLFPVMTASMSQEIVFGIFGIICFLGVLFIQEIVPETRGKSLEEIEQSASKKTYPKRISIHHS Bacillus/Lactobacillus/Streptococcus_group Enterococcus_faecium_C68 Enterococcus_faecium_C68 GG703720 129711..131111 Feldgarden,M.,_Rice,L.B.,_Adams,M.,_Dunman,P.,_Carias,L.,_Young,S.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1401 Genome_Coverage:_31.24xSequencing_Technology:_454. NA 29-SEP-2009 Enterococcus_faecium_C68_genomic_scaffold_supercont1.23,_whole_genome_shotgun_sequence. NA Enterococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterococcus_faecium_D0AQV9_ENTFC.gb Enterococcus_(ex_Thiercelin_and_Jouhaud_1903)_Schleifer_and_Kilpper-Balz_1984 260073594 Unpublished NA GG703720 NA NA Lactobacillales low_GC_Gram+ NA 1401 NA genomic_DNA NA C68 NA Streptococcus_faecium_Orla-Jensen_1919_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 565664 Bacteria,_Firmicutes,_Lactobacillales,_Enterococcaceae,_Enterococcus The_Genome_Sequence_of_Enterococcus_faecium_strain_C68 NA GG703720.1 ATGAAAAAAGAAAAAAAAGTTTCCTCATCGTTTATTTATTTTTTTGGCGCATTTGGCGGCATTCTATTTGGATATGATATTGGTGTTATGACCGGCGCCTTACCTTTTTTACAGCATGATTGGGGTTTGGCAGGTAAAGCTTCTTTGATAGGATGGATCACGTCTTCGGTCATGTTAGGTGCGATCCTTGGCGGCTCTTTATCTGGTCTTCTTTCTGATAAGCTTGGACGACGAAAAATGATTCTTCTTTCTGCACTTATTTTTATGGCTGGTTCTGTCCTTTCTGCATCTGCCCCTCACAATGGTTCTTATTTTCTGATTGCAGCAAGGATTCTTCTAGGTTTAGCTGTTGGCGCTGCATCTGCCCTAGTTCCTGCTTATATGTCTGAAATGGCTCCTGCTAGACTAAGGGGAAGATTGTCAGGGATCAATCAAGTGATGATTGCTTCTGGCATGCTCCTTTCCTATGTTGCAGATTATTTGCTAAAAGGGTTGCCTGAAACGATGGCTTGGCGCGTGATGTTAGGGCTCGCTGCTGTCCCCGCGCTGATTTTATTTTTCGGTGTTTTAGCTCTACCAGAGTCACCGCGTTTTCTTATGCAATCTGGCCGCTTGGAAGAGGCAAAAAGAGTATTGAACTATATTCGGACACCAAAAGAAGCTGAACAGGAATTCGAACAAATCCAGCTGAATGTCAAACAAGAAAAGACAACCGGAACTTCTTGGCATACTTTGTTTTTAGAAAAATATCGTTCCTTAGTCATTGCCGGTATTGGTGTAGCAGTATTCCAGCAATTTCAAGGAGCTAATGCTATTTTTTACTATATTCCGCTGATCGTAGAAAAAGCGACTGGGCATGCAGCGAGCGATGCATTGATGTGGCCGATCATCCAAGGAATCATTTTAGTTGCTGGTTCTTTGCTCTTTTTGGTTATTGCAGACAAGTTCAATCGGCGAACTTTATTGAAAATAGGCGGTAGCGTGATGGGACTTTCTTTCATCCTACCAGCTGTTTTAGGAACTGTACTGGATGCTCATACAAATTCGTTGTTGATTCTCTTGTTTTTATGTATTTATGTCGCATTTTATTCTTGCACATGGGCTCCACTGACATGGGTAATCGTAGGCGAAATATTCCCACTAGCTGTCCGCGGGCGAGCATCTGGCCTAGCCTCTTCTTTTAATTGGATTGGTTCTTTCCTAGTTGGCTTGCTTTTTCCTGTGATGACTGCTTCTATGTCTCAAGAAATCGTTTTCGGCATTTTTGGGATCATCTGCTTTTTAGGGGTTTTATTTATTCAAGAGATCGTACCAGAAACTCGTGGGAAATCTTTAGAGGAAATCGAACAAAGTGCATCTAAAAAAACTTATCCTAAACGTATTTCTATCCATCATTCTTAA > 452 EfmE980_1215 NA major_myo-inositol_transporter_IolT EFF37740.1 11 MKKEKKVSSSFIYFFGAFGGILFGYDIGVMTGALPFLQHDWGLAGKASLIGWITSSVMLGAILGGSLSGLLSDKLGRRKMILLSALIFMAGSVLSASAPHNGSYFLIAARILLGLAVGAASALVPAYMSEMAPARLRGRLSGINQVMIASGMLLSYVADYLLKGLPETMAWRVMLGLAAVPALILFFGVLALPESPRFLVQSGRLEEAKRVLNYIRTPNEAEQEFEQIQLNVKQEKTTVTSWHTLFLEKYRSLVIAGIGVAVFQQFQGANAIFYYIPLIVEKATGHAASDALMWPIIQGIILVAGSLLFLVIADKFNRRTLLKIGGSVMGLSFILPAVLGTVLDAHTNSLLILLFLCIYVAFYSCTWAPLTWVIVGEIFPLAVRGRASGLASSFNWIGSFLVGLLFPVMTASMSQEIVFGIFGIICFLGVLFIQEIVPETRGKSLEEIEQSASKKTYPKRISIHHS Bacillus/Lactobacillus/Streptococcus_group Enterococcus_faecium_E980 Enterococcus_faecium_E980 ABQA01000038 7175..8575 van_Schaik,W.,_Top,J.,_Riley,D.R.,_Boekhorst,J.,_Vrijenhoek,J.E.,_Schapendonk,C.M.,_Hendrickx,A.P.,_Nijman,I.J.,_Bonten,M.J.,_Tettelin,H._and_Willems,R.J. NA 0:1401 Enterococcus_faecium_E980_was_isolated_from_a_healthy_humanvolunteer_in_1998_in_the_Netherlands._Like_other_human_commensalstrains,_E980_has_MLST_sequence_type_(ST)_94._DNA_and_bacteria_canbe_obtained_from_Dr._Rob_Willems_and_Dr._Willem_van_Schaik.##Genome-Assembly-Data-START##Genome_Coverage_::_19xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 26-MAR-2010 Enterococcus_faecium_E980_Contig00039,_whole_genome_shotgun_sequence. NA Enterococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterococcus_faecium_D4QK94_ENTFC.gb Enterococcus_(ex_Thiercelin_and_Jouhaud_1903)_Schleifer_and_Kilpper-Balz_1984 291608438 BMC_Genomics_11,_239_(2010) NA ABQA01000038 NA NA Lactobacillales low_GC_Gram+ 20398277 1401 NA genomic_DNA NA E980 NA Streptococcus_faecium_Orla-Jensen_1919_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 529885 Bacteria,_Firmicutes,_Lactobacillales,_Enterococcaceae,_Enterococcus Pyrosequencing-based_comparative_genome_analysis_of_the_nosocomial_pathogen_Enterococcus_faecium_and_identification_of_a_large_transferable_pathogenicity_island NA ABQA01000038.1 TTAAGAATGATGGATAGAAATACGTTTAGGATAAGTTTTTTTAGATGCACTTTGTTCGATTTCCTCTAAAGATTTCCCACGAGTCTCTGGTACGATCTCTTGAATAAATAAAACCCCTAAAAAGCAGATGATCCCAAAAATACCGAAAACGATTTCTTGAGACATAGAAGCAGTCATCACAGGAAAAAGCAAGCCGACTAGGAAAGAACCAATCCAATTGAAAGAAGAGGCCAGGCCAGATGCTCGCCCGCGGACAGCTAGTGGGAATATTTCGCCTACGATTACCCATGTCAGTGGAGCCCATGTGCAAGAATAAAATGCGACATAAATACATAAAAACAAGAGAATCAACAACGAATTTGTATGAGCATCCAGTACAGTTCCTAAAACAGCTGGTAGGATGAAAGAAAGTCCCATCACGCTACCGCCTATTTTCAATAAAGTTCGCCGATTGAACTTGTCTGCAATAACCAAAAAGAGCAAAGAACCAGCAACTAAAATGATTCCTTGGATGATCGGCCACATCAATGCATCGCTCGCTGCATGCCCAGTCGCTTTTTCTACGATCAGTGGAATATAGTAAAAAATAGCATTAGCTCCTTGAAATTGCTGGAATACTGCTACACCAATACCGGCAATAACTAACGAACGATACTTTTCTAAAAATAAAGTATGCCAAGAAGTTACGGTTGTCTTTTCTTGTTTGACATTCAGCTGGATTTGTTCAAATTCCTGTTCAGCTTCGTTTGGTGTCCGAATATAGTTCAATACTCTTTTTGCCTCTTCCAAGCGACCAGATTGCACAAGAAAACGCGGTGACTCTGGTAGAGCTAAAACGCCGAAAAATAAAATCAGTGCAGGGACAGCAGCGAGTCCTAACATCACGCGCCAAGCCATCGTTTCAGGTAACCCTTTTAGCAAATAATCTGCAACATAGGAAAGGAGCATGCCAGAAGCAATCATCACTTGATTGATCCCTGACAATCTTCCCCTTAGTCTAGCAGGAGCCATTTCAGACATATAAGCAGGAACTAGGGCAGATGCAGCGCCAACAGCTAAACCTAGAAGAATCCTTGCTGCAATCAGAAAATAAGAACCATTGTGAGGGGCAGATGCAGAAAGGACAGAACCAGCCATAAAAATAAGTGCAGAAAGAAGAATCATTTTTCGTCGTCCAAGCTTATCAGAAAGAAGACCAGATAAAGAGCCACCAAGGATCGCACCTAACATGACCGAAGACGTGATCCATCCTATCAAAGAAGCCTTACCTGCCAAACCCCAATCATGTTGTAAAAAAGGTAAAGCGCCGGTCATAACACCAATATCATATCCAAATAGAATGCCGCCAAATGCGCCAAAAAAATAAATAAACGATGAGGAAACTTTTTTTTCTTTTTTCAT > 453 EfmE1636_0401 NA major_myo-inositol_transporter_IolT EFF24438.1 11 MKKEKKVSSSFIYFFGAFGGILFGYDIGVMTGALPFLQHDWGLAGKASLIGWITSSVMLGAILGGSLSGLLSDKLGRRKMILLSALIFMAGSVLSASAPHNGSYFLIAARILLGLAVGAASALVPAYMSEMAPARLRGRLSGINQVMIASGMLLSYVADYLLKGLPETMAWRVMLGLAAVPALILFFGVLALPESPRFLMQSGRLEEAKRVLNYIRTPKEAEQEFEQIQLNVKQEKTTGTSWHTLFLEKYRSLVIAGIGVAVFQQFQGANAIFYYIPLIVEKATGHAASDALMWPIIQGIILVAGSLLFLVIADKFNRRTLLKIGGSVMGLSFILPAVLGTVLDAHTNSLLILLFLCIYVAFYSCTWAPLTWVIVGEIFPLAVRGRASGLASSFNWIGSFLVGLLFPVMTASMSQEIVFGIFGIICFLGVLFIQEIVPETRGKSLEEIEQSASKKTYPKRISIHHS Bacillus/Lactobacillus/Streptococcus_group Enterococcus_faecium_E1636 Enterococcus_faecium_E1636 ABRY01000025 16407..17807 van_Schaik,W.,_Top,J.,_Riley,D.R.,_Boekhorst,J.,_Vrijenhoek,J.E.,_Schapendonk,C.M.,_Hendrickx,A.P.,_Nijman,I.J.,_Bonten,M.J.,_Tettelin,H._and_Willems,R.J. NA 0:1401 Enterococcus_faecium_E1636_was_isolated_from_a_bloodstreaminfection_in_1961_in_the_Netherlands.DNA_and_bacteria_can_be_obtained_from_Dr._Willem_van_Schaik_or_Dr.Rob_Willems.##Genome-Assembly-Data-START##Genome_Coverage_::_19xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 26-MAR-2010 Enterococcus_faecium_E1636_Contig00025,_whole_genome_shotgun_sequence. NA Enterococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterococcus_faecium_D4R6K8_ENTFC.gb Enterococcus_(ex_Thiercelin_and_Jouhaud_1903)_Schleifer_and_Kilpper-Balz_1984 291592831 BMC_Genomics_11,_239_(2010) NA ABRY01000025 NA NA Lactobacillales low_GC_Gram+ 20398277 1401 NA genomic_DNA NA E1636 NA Streptococcus_faecium_Orla-Jensen_1919_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 544875 Bacteria,_Firmicutes,_Lactobacillales,_Enterococcaceae,_Enterococcus Pyrosequencing-based_comparative_genome_analysis_of_the_nosocomial_pathogen_Enterococcus_faecium_and_identification_of_a_large_transferable_pathogenicity_island NA ABRY01000025.1 TTAAGAATGATGGATAGAAATACGTTTAGGATAAGTTTTTTTAGATGCACTTTGTTCGATTTCCTCTAAAGATTTCCCACGAGTTTCTGGTACGATCTCTTGAATAAATAAAACCCCTAAAAAGCAGATGATCCCAAAAATACCGAAAACGATTTCTTGAGACATAGAAGCAGTCATCACAGGAAAAAGCAAGCCGACTAGGAAAGAACCAATCCAATTAAAAGAAGAGGCCAGGCCAGATGCTCGCCCGCGGACAGCTAGTGGGAATATTTCGCCTACGATTACCCATGTCAGTGGAGCCCATGTGCAAGAATAAAATGCGACATAAATACATAAAAACAAGAGAATCAACAACGAATTTGTATGAGCATCCAGTACAGTTCCTAAAACAGCTGGTAGGATGAAAGAAAGTCCCATCACGCTACCGCCTATTTTCAATAAAGTTCGCCGATTGAACTTGTCTGCAATAACCAAAAAGAGCAAAGAACCAGCAACTAAAATGATTCCTTGGATGATCGGCCACATCAATGCATCGCTCGCTGCATGCCCAGTCGCTTTTTCTACGATCAGCGGAATATAGTAAAAAATAGCATTAGCTCCTTGAAATTGCTGGAATACTGCTACACCAATACCGGCAATGACTAAGGAACGATATTTTTCTAAAAACAAAGTATGCCAAGAAGTTCCGGTTGTCTTTTCTTGTTTGACATTCAGCTGGATTTGTTCGAATTCCTGTTCAGCTTCTTTTGGTGTCCGAATATAGTTCAATACTCTTTTTGCCTCTTCCAAGCGGCCAGATTGCATAAGAAAACGCGGTGACTCTGGTAGAGCTAAAACACCGAAAAATAAAATCAGCGCGGGGACAGCAGCGAGTCCTAACATCACGCGCCAAGCCATCGTTTCAGGCAACCCTTTTAGCAAATAATCTGCAACATAGGAAAGGAGCATGCCAGAAGCAATCATCACTTGATTGATCCCTGACAATCTTCCCCTTAGTCTAGCAGGAGCCATTTCAGACATATAAGCAGGAACTAGGGCAGATGCAGCGCCAACAGCTAAACCTAGAAGAATCCTTGCTGCAATCAGAAAATAAGAACCATTGTGAGGGGCAGATGCAGAAAGGACAGAACCAGCCATAAAAATAAGTGCAGAAAGAAGAATCATTTTTCGTCGTCCAAGCTTATCAGAAAGAAGACCAGATAAAGAGCCGCCAAGGATCGCACCTAACATGACCGAAGACGTGATCCATCCTATCAAAGAAGCTTTACCTGCCAAACCCCAATCATGCTGTAAAAAAGGTAAGGCGCCGGTCATAACACCAATATCATATCCAAATAGAATGCCGCCAAATGCGCCAAAAAAATAAATAAACGATGAGGAAACTTTTTTTTCTTTTTTCAT > 454 HMPREF9526_00933 KEGG:_lre:Lreu_0479_1.2e-169_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_sugar_porter_family_protein EFR72023.1 11 MKKEKKVSSSFIYFFGAFGGILFGYDIGVMTGALPFLQHDWGLAGKASLIGWITSSVMLGAILGGSLSGLLSDKLGRRKMILLSALIFMAGSVLSASAPHNGSYFLIAARILLGLAVGAASALVPAYMSEMAPARLRGRLSGINQVMIASGMLLSYVADYLLKGLPETMAWRVMLGLAAVPALILFFGVLALPESPRFLMQSGRLEEAKRVLNYIRTPKEAEQEFEQIQLNVKQEKTTGTSWHTLFLEKYRSLVIAGIGVAVFQQFQGANAIFYYIPLIVEKATGHAASDALMWPIIQGIILVAGSLLFLVIADKFNRRTLLKIGGSVMGLSFILPAVLGTVLDAHTNSLLILLFLCIYVAFYSCTWAPLTWVIVGEIFPLAVRGRASGLASSFNWIGSFLVGLLFPVMTASMSQEIVFGIFGIICFLGVLFIQEIVPETRGKSLEEIEQSASKKTYPKRISIHHS Bacillus/Lactobacillus/Streptococcus_group Enterococcus_faecium_TX0133B Enterococcus_faecium_TX0133B AECI01000044 16950..18350 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1401 Enterococcus_faecium_TX_0133B_(No_16S_rRNA_gene_available)_is_amember_of_the_Firmicutes_division_of_the_domain_bacteria_and_regionof_isolation_is_blood.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_and_source_DNA_were_provided_by_Cesar_A._Arias,_MD,_MSc,PhD_(Assistant_Professor,_Division_of_Infectious_Diseases,Director,_Laboratory_for_Antimicrobial_Research,_University_ofTexas_Medical_School_at_Houston,_MSB_2.112,_6431_Fannin_St,Houston,_TX_77030,_USA._Funded_by_the_NIH_grant_K99/R00_Pathway_toIndependence_Award_(1K99-AI72961).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_is_funding_the_sequence_characterizationof_the_Enterococcus_faecium_TX_0133B_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_73.5xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 06-DEC-2010 Enterococcus_faecium_TX0133B_E_faeciumTX0133B-1.0_Cont73.1,_whole_genome_shotgun_sequence. NA Enterococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterococcus_faecium_E4J6N1_ENTFC.gb Enterococcus_(ex_Thiercelin_and_Jouhaud_1903)_Schleifer_and_Kilpper-Balz_1984 306476964 Submitted_(02-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA AECI01000044 NA NA Lactobacillales low_GC_Gram+ NA 1401 NA genomic_DNA NA TX0133B NA Streptococcus_faecium_Orla-Jensen_1919_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749524 Bacteria,_Firmicutes,_Lactobacillales,_Enterococcaceae,_Enterococcus Direct_Submission NA AECI01000044.1 ATGAAAAAAGAAAAAAAAGTTTCCTCATCGTTTATTTATTTTTTTGGCGCATTTGGCGGCATTCTATTTGGATATGATATTGGTGTTATGACCGGCGCCTTACCTTTTTTACAGCATGATTGGGGTTTGGCAGGTAAAGCTTCTTTGATAGGATGGATCACGTCTTCGGTCATGTTAGGTGCGATCCTTGGCGGCTCTTTATCTGGTCTTCTTTCTGATAAGCTTGGACGACGAAAAATGATTCTTCTTTCTGCACTTATTTTTATGGCTGGTTCTGTCCTTTCTGCATCTGCCCCTCACAATGGTTCTTATTTTCTGATTGCAGCAAGGATTCTTCTAGGTTTAGCTGTTGGCGCTGCATCTGCCCTAGTTCCTGCTTATATGTCTGAAATGGCTCCTGCTAGACTAAGGGGAAGATTGTCAGGGATCAATCAAGTGATGATTGCTTCTGGCATGCTCCTTTCCTATGTTGCAGATTATTTGCTAAAAGGGTTGCCTGAAACGATGGCTTGGCGCGTGATGTTAGGGCTCGCTGCTGTCCCCGCGCTGATTTTATTTTTCGGTGTTTTAGCTCTACCAGAGTCACCGCGTTTTCTTATGCAATCTGGCCGCTTGGAAGAGGCAAAAAGAGTATTGAACTATATTCGGACACCAAAAGAAGCTGAACAGGAATTCGAACAAATCCAGCTGAATGTCAAACAAGAAAAGACAACCGGAACTTCTTGGCATACTTTGTTTTTAGAAAAATATCGTTCCTTAGTCATTGCCGGTATTGGTGTAGCAGTATTCCAGCAATTTCAAGGAGCTAATGCTATTTTTTACTATATTCCGCTGATCGTAGAAAAAGCGACTGGGCATGCAGCGAGCGATGCATTGATGTGGCCGATCATCCAAGGAATCATTTTAGTTGCTGGTTCTTTGCTCTTTTTGGTTATTGCAGACAAGTTCAATCGGCGAACTTTATTGAAAATAGGCGGTAGCGTGATGGGACTTTCTTTCATCCTACCAGCTGTTTTAGGAACTGTACTGGATGCTCATACAAATTCGTTGTTGATTCTCTTGTTTTTATGTATTTATGTCGCATTTTATTCTTGCACATGGGCTCCACTGACATGGGTAATCGTAGGCGAAATATTCCCACTAGCTGTCCGCGGGCGAGCATCTGGCCTAGCCTCTTCTTTTAATTGGATTGGTTCTTTCCTAGTTGGCTTGCTTTTTCCTGTGATGACTGCTTCTATGTCTCAAGAAATCGTTTTCGGCATTTTTGGGATCATCTGCTTTTTAGGGGTTTTATTTATTCAAGAGATCGTACCAGAAACTCGTGGGAAATCTTTAGAGGAAATCGAACAAAGTGCATCTAAAAAAACTTATCCTAAACGTATTTCTATCCATCATTCTTAA > 455 HMPREF9524_02562 KEGG:_lre:Lreu_0479_1.2e-169_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_sugar_porter_family_protein EFR67338.1 11 MKKEKKVSSSFIYFFGAFGGILFGYDIGVMTGALPFLQHDWGLAGKASLIGWITSSVMLGAILGGSLSGLLSDKLGRRKMILLSALIFMAGSVLSASAPHNGSYFLIAARILLGLAVGAASALVPAYMSEMAPARLRGRLSGINQVMIASGMLLSYVADYLLKGLPETMAWRVMLGLAAVPALILFFGVLALPESPRFLMQSGRLEEAKRVLNYIRTPKEAEQEFEQIQLNVKQEKTTGTSWHTLFLEKYRSLVIAGIGVAVFQQFQGANAIFYYIPLIVEKATGHAASDALMWPIIQGIILVAGSLLFLVIADKFNRRTLLKIGGSVMGLSFILPAVLGTVLDAHTNSLLILLFLCIYVAFYSCTWAPLTWVIVGEIFPLAVRGRASGLASSFNWIGSFLVGLLFPVMTASMSQEIVFGIFGIICFLGVLFIQEIVPETRGKSLEEIEQSASKKTYPKRISIHHS Bacillus/Lactobacillus/Streptococcus_group Enterococcus_faecium_TX0133a01 Enterococcus_faecium_TX0133a01 AECJ01000175 48709..50109 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1401 Enterococcus_faecium_TX_0133a01_(No_16S_rRNA_gene_available)_is_amember_of_the_Firmicutes_division_of_the_domain_bacteria_and_regionof_isolation_is_blood.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_and_source_DNA_were_provided_by_Cesar_A._Arias,_MD,_MSc,PhD_(Assistant_Professor,_Division_of_Infectious_Diseases,Director,_Laboratory_for_Antimicrobial_Research,_University_ofTexas_Medical_School_at_Houston,_MSB_2.112,_6431_Fannin_St,Houston,_TX_77030,_USA._Funded_by_the_NIH_grant_K99/R00_Pathway_toIndependence_Award_(1K99-AI72961).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_is_funding_the_sequence_characterizationof_the_Enterococcus_faecium_TX_0133a01_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.8xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 06-DEC-2010 Enterococcus_faecium_TX0133a01_E_faeciumTX0133a01-1.0_Cont412.1,_whole_genome_shotgun_sequence. NA Enterococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterococcus_faecium_E4JK53_ENTFC.gb Enterococcus_(ex_Thiercelin_and_Jouhaud_1903)_Schleifer_and_Kilpper-Balz_1984 306476611 Submitted_(03-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA AECJ01000175 NA NA Lactobacillales low_GC_Gram+ NA 1401 NA genomic_DNA NA TX0133a01 NA Streptococcus_faecium_Orla-Jensen_1919_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749522 Bacteria,_Firmicutes,_Lactobacillales,_Enterococcaceae,_Enterococcus Direct_Submission NA AECJ01000175.1 ATGAAAAAAGAAAAAAAAGTTTCCTCATCGTTTATTTATTTTTTTGGCGCATTTGGCGGCATTCTATTTGGATATGATATTGGTGTTATGACCGGCGCCTTACCTTTTTTACAGCATGATTGGGGTTTGGCAGGTAAAGCTTCTTTGATAGGATGGATCACGTCTTCGGTCATGTTAGGTGCGATCCTTGGCGGCTCTTTATCTGGTCTTCTTTCTGATAAGCTTGGACGACGAAAAATGATTCTTCTTTCTGCACTTATTTTTATGGCTGGTTCTGTCCTTTCTGCATCTGCCCCTCACAATGGTTCTTATTTTCTGATTGCAGCAAGGATTCTTCTAGGTTTAGCTGTTGGCGCTGCATCTGCCCTAGTTCCTGCTTATATGTCTGAAATGGCTCCTGCTAGACTAAGGGGAAGATTGTCAGGGATCAATCAAGTGATGATTGCTTCTGGCATGCTCCTTTCCTATGTTGCAGATTATTTGCTAAAAGGGTTGCCTGAAACGATGGCTTGGCGCGTGATGTTAGGGCTCGCTGCTGTCCCCGCGCTGATTTTATTTTTCGGTGTTTTAGCTCTACCAGAGTCACCGCGTTTTCTTATGCAATCTGGCCGCTTGGAAGAGGCAAAAAGAGTATTGAACTATATTCGGACACCAAAAGAAGCTGAACAGGAATTCGAACAAATCCAGCTGAATGTCAAACAAGAAAAGACAACCGGAACTTCTTGGCATACTTTGTTTTTAGAAAAATATCGTTCCTTAGTCATTGCCGGTATTGGTGTAGCAGTATTCCAGCAATTTCAAGGAGCTAATGCTATTTTTTACTATATTCCGCTGATCGTAGAAAAAGCGACTGGGCATGCAGCGAGCGATGCATTGATGTGGCCGATCATCCAAGGAATCATTTTAGTTGCTGGTTCTTTGCTCTTTTTGGTTATTGCAGACAAGTTCAATCGGCGAACTTTATTGAAAATAGGCGGTAGCGTGATGGGACTTTCTTTCATCCTACCAGCTGTTTTAGGAACTGTACTGGATGCTCATACAAATTCGTTGTTGATTCTCTTGTTTTTATGTATTTATGTCGCATTTTATTCTTGCACATGGGCTCCACTGACATGGGTAATCGTAGGCGAAATATTCCCACTAGCTGTCCGCGGGCGAGCATCTGGCCTAGCCTCTTCTTTTAATTGGATTGGTTCTTTCCTAGTTGGCTTGCTTTTTCCTGTGATGACTGCTTCTATGTCTCAAGAAATCGTTTTCGGCATTTTTGGGATCATCTGCTTTTTAGGGGTTTTATTTATTCAAGAGATCGTACCAGAAACTCGTGGGAAATCTTTAGAGGAAATCGAACAAAGTGCATCTAAAAAAACTTATCCTAAACGTATTTCTATCCATCATTCTTAA > 456 EBI_24636 NA hypothetical_protein XP_002650428.1 NA MNINNEITNSITVNESKSISNKDCNKLETINKKYFFQNFCAILALTQVNIYGLILFASGLLDMPQKLTSIMLVYLVASISNMMITLLKLECCISFFTANVMFIIGSIFKLYFDHNNMTNFYTDISVFSIYGFAIGIIMNVVPVYISMTAHGNTKIMLLNAIGGLGVVGGLFIANNFYYYFNDVKFLLILIIFECSILGLLFISICKRCKINGKLEIKYFKELFTTGINSTILLIIAMIANNLSGILYPIVEKQNIFGRNNQLTYDNLSNVIAMLCTVLAYYVNNGALGRKSALILSSIGCFITNILFAILNIQYHKFICILFIIVYNIGLGCIPFILIGEIVPLKVIQEGSFIGSFANWLGGAFASKTFIPNSNMNFIWSNVILIILIVYFVLFFTETKYQKESKYQPFK NA Enterocytozoon_bieneusi_H348 Enterocytozoon_bieneusi_H348 XM_002650382 NA Akiyoshi,D.E.,_Morrison,H.G.,_Lei,S.,_Feng,X.,_Zhang,Q.,_Corradi,N.,_Mayanja,H.,_Tumwine,J.K.,_Keeling,P.J.,_Weiss,L.M._and_Tzipori,S. NA 0:1233 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003102097). NA 24-NOV-2009 Enterocytozoon_bieneusi_H348_hypothetical_protein_(EBI_24636)_mRNA,_complete_cds. NA Enterocytozoonidae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Enterocytozoon_bieneusi_B7XKA0_ENTBH.gb Enterocytozoon 269861440 PLoS_Pathog._5_(1),_E1000261_(2009) fungi XM_002650382 NA NA NA microsporidians 19132089 1233 NA mRNA NA H348 NA Enterocytozoon_bienusi NA forward NA NA NA NA Apansporoblastina NA NA NA NA NA eukaryotes NA 481877 Eukaryota,_Fungi,_Microsporidia,_Enterocytozoonidae,_Enterocytozoon Genomic_survey_of_the_non-cultivatable_opportunistic_human_pathogen,_Enterocytozoon_bieneusi NA XM_002650382.1 ATGAATATTAATAACGAAATAACCAATAGTATTACTGTAAATGAAAGTAAAAGTATATCTAATAAAGATTGTAATAAATTAGAAACAATAAATAAGAAATATTTTTTCCAAAATTTTTGTGCAATTTTAGCATTAACGCAAGTTAATATTTATGGACTAATTTTATTTGCAAGCGGATTATTAGATATGCCTCAAAAATTAACATCAATTATGTTAGTTTATTTAGTAGCAAGTATTTCTAATATGATGATTACTTTACTTAAATTAGAATGCTGTATCAGCTTTTTTACTGCTAATGTCATGTTTATAATAGGATCAATTTTTAAGTTATATTTTGATCATAACAATATGACGAATTTTTATACGGATATTTCTGTATTTTCTATATATGGATTTGCAATTGGTATAATTATGAATGTTGTACCAGTTTATATTTCTATGACTGCTCATGGTAATACAAAAATTATGTTACTTAATGCAATTGGTGGACTTGGAGTTGTAGGTGGATTATTTATTGCAAATAATTTTTATTATTATTTTAATGATGTAAAATTTTTATTAATATTAATTATTTTTGAATGTAGTATTTTAGGATTATTATTTATAAGTATTTGTAAACGATGTAAAATTAATGGAAAATTGGAAATAAAGTATTTTAAAGAATTATTTACTACAGGAATTAATTCAACAATATTATTAATAATAGCAATGATAGCAAATAATTTAAGTGGTATTTTATATCCAATTGTAGAAAAACAAAATATATTTGGTAGAAATAATCAATTGACCTATGATAACTTGTCAAATGTTATTGCTATGCTATGTACAGTCTTAGCATATTATGTTAATAATGGCGCACTTGGTCGTAAATCTGCATTAATCTTGTCATCAATTGGATGCTTTATTACTAATATATTATTTGCAATCTTAAATATTCAATATCATAAATTTATTTGCATTTTATTTATTATTGTCTATAATATAGGATTAGGTTGTATTCCATTTATTTTAATTGGAGAAATAGTTCCATTAAAAGTTATACAAGAAGGATCTTTTATTGGAAGTTTTGCAAATTGGCTTGGAGGTGCATTTGCATCTAAAACATTTATTCCAAATAGCAATATGAATTTTATTTGGTCTAATGTTATTTTAATAATTTTAATAGTATACTTTGTATTATTTTTTACGGAAACTAAATATCAAAAAGAGTCTAAATATCAACCATTTAAATAA > 457 EAM_2954 NA major_facilitator_superfamily_protein YP_003540020.1 11 MTSHVTQPVSRQSGARRIFNVTSGNFLEMYDFMVFGYYATAIAKTFFPGDDPFASLMLTLMTFGAGFLMRPLGAIILGSYIDRHGRRKGLLLTLGLMALGTLSIAITPGYSTLGMAAPIMILLGRLLQGFSAGVELGGVSVYLSEIAPKGRKGFYVSWQSASQQIAVIFAALLGLMLNHLLDKGEVTDWGWRVPFLIGCLIVPFLFWIRRMLEETEAFSQRKHHPSMRQIVHSVGRNWALVLAGMLMVVTTTVMFYMITAYTPTFGKTVLMISDKQSFLVTLCVGISNLFWLPVMGSLSDRIGRRPLLLLFTVLMIATAWPVLNWLVGSPSLTHLLLAELWLSFLYGSYNGAMVVYLAEVMPAEVRATGFSLAYSLATALFGGFTPAVCSYLIHVTGDKAMPGVWLSFAAVCGLLGTLIIKRLVKQYQARRLMEPAIQLP gamma_subgroup Erwinia_amylovora_ATCC_49946 Erwinia_amylovora_ATCC_49946 NC_013971 3219140..3220462 Sebaihia,M.,_Bocsanczy,A.M.,_Biehl,B.S.,_Quail,M.A.,_Perna,N.T.,_Glasner,J.D.,_Declerck,G.A.,_Cartinhour,S.,_Schneider,D.J.,_Bentley,S.D.,_Parkhill,J._and_Beer,S.V. NA 0:1323 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FN666575.COMPLETENESS:_full_length. NA 16-NOV-2011 Erwinia_amylovora_ATCC_49946_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Erwinia_amylovora_D4IBI7_ERWAE.gb Erwinia_Winslow_et_al._1920_(Approved_Lists_1980)_emend._Hauben_et_al._1999 292897734 J._Bacteriol._192_(7),_2020-2021_(2010) NA NC_013971 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20118253 1323 NA genomic_DNA NA ATCC_49946 NA Micrococcus_amylovorus NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 716540 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Erwinia Complete_Genome_Sequence_of_the_Plant_Pathogen_Erwinia_amylovora_Strain_ATCC_49946 NA NC_013971.1 ATGACCTCACATGTAACCCAGCCAGTCTCACGCCAAAGCGGAGCCAGACGTATCTTCAACGTTACCAGCGGTAACTTCCTCGAAATGTATGATTTTATGGTATTTGGCTATTACGCTACGGCCATTGCCAAAACATTTTTCCCCGGTGATGATCCCTTCGCCTCATTGATGCTGACGCTAATGACCTTTGGTGCCGGCTTCCTGATGCGTCCGCTCGGTGCCATTATCCTTGGCTCTTACATCGACAGGCACGGACGGCGCAAAGGTTTGTTGCTTACCCTTGGATTAATGGCGCTGGGTACGCTGTCCATTGCCATCACACCCGGTTACAGCACGCTGGGCATGGCGGCACCGATTATGATCTTGCTGGGTCGCCTGTTACAGGGTTTCTCGGCCGGGGTAGAGCTGGGTGGCGTGTCGGTTTATCTGTCAGAGATTGCGCCAAAGGGGAGAAAAGGATTCTACGTTAGCTGGCAGTCCGCCAGTCAGCAGATTGCGGTTATCTTTGCCGCACTGCTCGGTTTGATGTTGAACCACCTGCTGGATAAAGGTGAAGTGACCGACTGGGGCTGGCGCGTCCCGTTCCTGATTGGCTGCCTGATCGTGCCATTTCTGTTCTGGATCCGCCGCATGCTGGAAGAGACGGAAGCGTTCAGCCAGCGCAAACACCATCCGTCCATGCGCCAGATTGTTCACTCGGTAGGACGCAACTGGGCGCTGGTACTGGCCGGCATGCTGATGGTCGTCACCACCACGGTGATGTTTTATATGATCACCGCCTACACGCCGACCTTCGGCAAAACCGTGCTGATGATCAGCGATAAACAGAGTTTCCTGGTGACCTTGTGTGTGGGGATCTCTAACCTGTTCTGGCTACCGGTTATGGGTTCGCTGTCTGACCGCATTGGCCGCCGCCCGCTACTGCTGCTGTTTACCGTGCTGATGATCGCCACCGCATGGCCAGTGCTGAACTGGCTGGTCGGCTCGCCGAGCTTAACGCATTTATTGCTGGCCGAACTGTGGCTGTCTTTCCTGTACGGCAGTTACAACGGGGCGATGGTGGTTTACCTGGCAGAGGTGATGCCGGCAGAAGTGCGCGCGACCGGGTTTTCGCTGGCTTACAGTCTGGCGACCGCGCTGTTTGGCGGCTTTACCCCGGCAGTGTGCAGCTATCTGATCCATGTCACGGGAGATAAAGCGATGCCGGGAGTATGGCTCTCTTTCGCCGCCGTATGCGGCCTGCTGGGTACGCTGATCATTAAGCGCCTGGTGAAGCAGTATCAGGCGCGTCGTCTGATGGAGCCGGCAATCCAGCTACCATAA > 458 EAIL5_1321 NA putative_MFS_sugar_transporter CBX80141.1 11 MTKEQYITLNRASGPNSSSKTEPFVKVIAAVATLGGLLFGYDTGVISGALLFMGDELHLTPFTTGLVTSSLLFGAAFGALFSGLFANAAGRKNIIILLALIFIIGAVGTSVAPNVGWMIFFRLILGVAVGGASATVPVYIAEIAPANHRGQLVTLQELMIVSGQLLAYISNAGFNAAWGGSESWRWMLALATVPAVLLWFGMMFMPDTPRWYAMQGKLAEARRVLERTRAREDVDWEMAEIEETLAEEDHGVKARLRDLAKPWLLKLFLIGIGIAMIQQTSGVNTIMYYAPTMLKAVGMSTNAALFATIANGAVSVLMACVGIWLLGKTGRRTMTLIGQFGCTFSLLFIAAVSFFMPETVHGQADALRGYMVLLGMLIFLCFQQAFLSPATWLLLSEIFPTRMRGVFMGSAIFAMWIANFLISLAFPLLLASVGLPGAFLSFALIGIFSGIFVVKCVPETRNRSLEQIEHYLHERLGEDNESRPSLAAAKRQAASH gamma_subgroup Erwinia_amylovora_ATCC_BAA-2158 Erwinia_amylovora_ATCC_BAA-2158 FR719190 107357..108847 Powney,R.,_Smits,T.H.,_Sawbridge,T.,_Frey,B.,_Blom,J.,_Frey,J.E.,_Plummer,K.M.,_Beer,S.V.,_Luck,J.,_Duffy,B._and_Rodoni,B. NA 0:1491 NA NA 17-JAN-2011 Erwinia_amylovora_ATCC_BAA-2158,_whole_genome_shotgun_sequence,_contig_10. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Erwinia_amylovora_E5B3T8_ERWAM.gb Erwinia_Winslow_et_al._1920_(Approved_Lists_1980)_emend._Hauben_et_al._1999 312171772 J._Bacteriol._193_(3),_785-786_(2011) NA FR719190 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21131493 1491 NA genomic_DNA NA ATCC_BAA-2158 NA Micrococcus_amylovorus NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 889211 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Erwinia Genome_sequence_of_an_Erwinia_amylovora_strain_with_pathogenicity_restricted_to_Rubus_plants NA FR719190.1 ATGACAAAAGAACAATATATTACCCTTAACCGGGCGTCCGGCCCCAACAGCAGCAGTAAAACAGAACCCTTTGTCAAAGTGATTGCAGCAGTGGCCACCCTTGGCGGCCTGCTGTTCGGTTACGACACCGGCGTGATCTCTGGTGCACTGCTGTTTATGGGCGATGAACTGCACCTGACGCCTTTCACAACCGGCCTGGTGACCAGCTCCCTGCTGTTCGGTGCTGCTTTTGGCGCGCTATTCTCGGGCCTTTTCGCCAATGCGGCCGGAAGGAAGAACATCATTATCCTTCTTGCGCTGATCTTTATTATCGGTGCCGTCGGCACGTCTGTTGCGCCGAACGTTGGATGGATGATTTTCTTCCGTCTGATCCTCGGCGTTGCGGTCGGCGGCGCTTCGGCCACGGTGCCGGTCTATATCGCCGAAATTGCGCCGGCTAACCATCGTGGTCAGCTGGTGACTTTGCAGGAACTGATGATCGTCAGCGGTCAGCTGCTGGCCTATATCTCCAATGCCGGATTTAACGCCGCCTGGGGCGGCAGTGAAAGCTGGCGCTGGATGCTGGCTTTAGCCACCGTCCCGGCTGTGCTGTTGTGGTTCGGCATGATGTTTATGCCCGATACCCCGCGCTGGTATGCCATGCAGGGCAAGCTGGCAGAAGCCCGGCGCGTGCTGGAACGCACCCGTGCCAGGGAAGACGTGGACTGGGAAATGGCGGAAATCGAGGAAACGCTGGCAGAAGAAGATCACGGGGTTAAGGCGCGGCTGCGCGATCTGGCAAAACCATGGCTGCTTAAGCTGTTTCTGATCGGTATCGGTATTGCCATGATCCAACAAACCTCCGGCGTAAATACCATTATGTACTACGCGCCGACCATGCTGAAGGCTGTGGGTATGAGCACCAACGCGGCGCTGTTTGCCACCATCGCCAACGGCGCGGTATCGGTGCTGATGGCCTGTGTGGGCATCTGGCTATTGGGCAAAACGGGGCGGCGCACCATGACGCTAATCGGACAGTTTGGCTGTACCTTCAGCCTGCTGTTTATTGCTGCTGTCAGTTTCTTTATGCCGGAAACCGTGCACGGGCAGGCTGATGCACTGCGCGGCTACATGGTACTGCTCGGGATGCTGATATTCCTCTGCTTCCAGCAGGCCTTCCTGTCACCGGCCACCTGGCTGCTGCTGTCGGAGATCTTCCCAACGCGCATGCGCGGCGTGTTTATGGGCAGTGCAATCTTCGCTATGTGGATTGCCAACTTTCTGATATCGCTGGCATTCCCGCTGTTATTAGCCAGCGTGGGGCTGCCCGGTGCCTTCTTAAGCTTTGCCCTGATTGGCATTTTCTCCGGTATTTTCGTGGTCAAATGCGTGCCGGAAACGCGCAACCGCAGCCTGGAGCAAATCGAACACTACCTCCATGAGCGGTTGGGTGAAGATAACGAAAGCCGCCCGTCGCTGGCAGCGGCAAAACGCCAGGCGGCCAGCCATTAA > 459 EbC_20150 silverDB:661Eb02716 4-hydroxybenzoate_transporter YP_003741396.1 11 MESTAAIDVRALINQGSISRYQQRIIALCFAVVAMDGMDIALMGFIAPALKSDWGVSTHQLGAVISAALIGLALGAMLAGPLADRFGRRVVIISSVFFFGLWTLMTALSHNVDQMMLFRFLTGLGMGAAMPNVGTLVAEYSPERKRAFIITVVFCGFTFGAAGGGFAASWLIPNFGWHAVLVVGGILPLLMVPILLKGLPESVRFLIARQAPAERIRQIVAKMAPDQALNGRQFAMAEKPQCHGAARLVLSRPYLLGSTLLWGAYFMGLFLVYLIGSWLPSLVKDMGMTVTQAALVTAMYQAGGTVGSLFAGWMMDRFNANLALAAIYFTGAIATVAIGFAPAHTLVLSLVAFCSGFCLNGANTGMNALSASYYPTHARATGSSWMHGVGRIGAILSAFAGAQMLSMGWNITEVFSSLAIPAVLTSLLLLAKYRYGYRR gamma_subgroup Erwinia_billingiae_Eb661 Erwinia_billingiae_Eb661 NC_014306 2273499..2274818 Kube,M.,_Migdoll,A.M.,_Gehring,I.,_Heitmann,K.,_Mayer,Y.,_Kuhl,H.,_Knaust,F.,_Geider,K._and_Reinhardt,R. NA 0:1320 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FP236843.This_project_was_carried_out_by*Max_Planck_Institute_for_Molecular_Genetics,_Berlin,_Germany_(principle_investigator);--------------_Genome_Center_Center:_Max_Planck_Institute_for_Molecular_Genetics_Center_code:_MPIMG--------------.COMPLETENESS:_full_length. NA 25-JAN-2012 Erwinia_billingiae_Eb661_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Erwinia_billingiae_D8MRT9_ERWBE.gb Erwinia_Winslow_et_al._1920_(Approved_Lists_1980)_emend._Hauben_et_al._1999 300714588 BMC_Genomics_11,_393_(2010) NA NC_014306 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20565991 1320 NA genomic_DNA NA Eb661 NA Erwinia_billingiae_Mergaert_et_al._1999 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 634500 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Erwinia Genome_comparison_of_the_epiphytic_bacteria_Erwinia_billingiae_and_E._tasmaniensis_with_the_pear_pathogen_E._pyrifoliae NA NC_014306.1 GTGGAGAGTACCGCTGCGATTGATGTGCGTGCCTTAATTAATCAAGGCAGCATCAGCCGTTACCAGCAAAGGATTATTGCCCTGTGCTTCGCCGTGGTGGCAATGGACGGCATGGACATTGCCCTGATGGGGTTTATTGCACCGGCGCTGAAAAGTGACTGGGGCGTCAGCACTCATCAGCTTGGGGCGGTGATCAGTGCCGCACTGATTGGCCTGGCGCTGGGGGCGATGCTGGCAGGTCCGCTGGCCGACCGGTTTGGCCGTCGGGTGGTGATCATCAGCAGCGTGTTCTTCTTCGGCTTATGGACGCTGATGACCGCGCTGTCGCACAACGTCGATCAAATGATGCTGTTCCGCTTCCTCACCGGGCTGGGGATGGGCGCGGCAATGCCCAATGTCGGCACGCTGGTGGCGGAATACTCTCCTGAACGTAAACGCGCCTTCATTATCACCGTGGTGTTCTGCGGCTTCACCTTTGGTGCGGCGGGCGGCGGATTTGCGGCGTCGTGGTTGATCCCCAACTTCGGCTGGCATGCGGTGCTGGTGGTGGGTGGAATTTTACCGTTACTGATGGTGCCAATCTTGCTGAAGGGATTGCCGGAATCGGTGCGGTTTCTGATCGCCAGACAGGCGCCCGCTGAACGCATCCGCCAGATCGTCGCAAAAATGGCACCGGACCAGGCACTGAACGGGCGTCAGTTCGCCATGGCGGAAAAACCGCAGTGCCACGGCGCGGCGCGGCTGGTGTTGAGCCGTCCTTACCTGCTGGGCAGCACACTGCTGTGGGGCGCCTATTTTATGGGGCTGTTCCTGGTGTATCTGATCGGCAGCTGGTTGCCTTCGCTGGTGAAAGACATGGGGATGACGGTCACGCAAGCGGCGCTGGTCACCGCGATGTATCAGGCAGGCGGCACGGTGGGTTCGCTGTTTGCGGGCTGGATGATGGACCGCTTCAATGCCAACCTGGCGCTGGCAGCGATCTATTTTACCGGTGCCATCGCCACGGTGGCGATTGGCTTTGCCCCAGCCCACACGCTGGTGCTCAGCCTGGTGGCCTTCTGCAGTGGTTTTTGCCTGAATGGCGCCAATACCGGAATGAACGCGCTGTCTGCCAGCTATTATCCCACTCACGCCCGTGCCACCGGCTCCAGCTGGATGCATGGCGTCGGGCGGATTGGCGCGATCCTCAGCGCGTTTGCCGGCGCGCAAATGCTGTCGATGGGCTGGAACATCACCGAAGTGTTTAGCAGCCTGGCGATCCCGGCGGTGCTGACCTCATTACTGCTGCTGGCGAAATACCGTTACGGCTACCGTCGCTAA > 460 EbC_20290 silverDB:661Eb02733 major_facilitator_superfamily_transporter YP_003741410.1 11 MSSVVHPQSDTLSTTPNLYKTLFATCVGNALEWFDIAVYGFFASYIAHAFFPTQDPAVSLLLTFGSFGVSFLIRPLGAIVLGAYADRVGRKKALMMSITLMMVGGLIIVLMPAYGTIGLIAPIMILLARLIQGFSAGGEFGSSTAFLVEHFPHRRAFIASWQFATQGASTLLASAFGLGLTQWLSEAQIQDWGWRIPFAFGLLIGPVGLYIRRHVHEPASFVAQEKAHSPLKLLAGQQKNLMLLAIGLMVISTGINYMLNYVPTYATKSLHLSGTAAFSATLLAGVILTVVTPLMGLWAEKIGRTPLMWGSLILLILTIYPAFLLVVNRPTAGMLLMLVGWMALLKSVYFSTVPSMMADLFPMTTRASGMAISYNIAVTVFGGFAPLICTLLITATGTSLAPSYYLMALALLSGWALYKTQSLKRVTA gamma_subgroup Erwinia_billingiae_Eb661 Erwinia_billingiae_Eb661 NC_014306 2291064..2292350 Kube,M.,_Migdoll,A.M.,_Gehring,I.,_Heitmann,K.,_Mayer,Y.,_Kuhl,H.,_Knaust,F.,_Geider,K._and_Reinhardt,R. NA 0:1287 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FP236843.This_project_was_carried_out_by*Max_Planck_Institute_for_Molecular_Genetics,_Berlin,_Germany_(principle_investigator);--------------_Genome_Center_Center:_Max_Planck_Institute_for_Molecular_Genetics_Center_code:_MPIMG--------------.COMPLETENESS:_full_length. NA 25-JAN-2012 Erwinia_billingiae_Eb661_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Erwinia_billingiae_D8MRV3_ERWBE.gb Erwinia_Winslow_et_al._1920_(Approved_Lists_1980)_emend._Hauben_et_al._1999 300714588 BMC_Genomics_11,_393_(2010) NA NC_014306 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20565991 1287 NA genomic_DNA NA Eb661 NA Erwinia_billingiae_Mergaert_et_al._1999 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 634500 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Erwinia Genome_comparison_of_the_epiphytic_bacteria_Erwinia_billingiae_and_E._tasmaniensis_with_the_pear_pathogen_E._pyrifoliae NA NC_014306.1 ATGAGCAGCGTCGTTCACCCGCAGTCTGACACGTTAAGCACCACGCCGAACCTGTATAAAACCCTGTTTGCCACCTGCGTGGGCAATGCTCTCGAATGGTTTGATATCGCGGTATACGGCTTTTTCGCCAGCTATATCGCCCATGCGTTTTTCCCCACTCAGGATCCCGCCGTTTCCCTTTTGCTGACCTTTGGCAGCTTTGGCGTGTCCTTCCTGATCCGGCCATTGGGGGCGATCGTACTGGGCGCTTATGCTGACCGCGTCGGGCGCAAAAAGGCACTGATGATGTCGATCACCCTGATGATGGTCGGCGGGCTGATCATTGTGCTGATGCCGGCTTACGGCACCATCGGCCTGATCGCGCCAATCATGATCCTGCTGGCGCGACTGATTCAGGGGTTCTCTGCAGGTGGCGAGTTTGGCAGTTCCACCGCCTTCCTCGTTGAACACTTTCCTCATCGCCGCGCATTTATCGCCAGCTGGCAGTTCGCAACCCAGGGCGCGAGCACCCTGTTAGCGTCGGCGTTCGGACTGGGATTAACCCAGTGGCTAAGCGAAGCGCAAATCCAGGACTGGGGATGGCGCATTCCTTTTGCTTTCGGACTGTTAATTGGCCCGGTCGGCCTCTATATTCGTCGTCATGTGCATGAACCCGCCAGCTTTGTCGCGCAGGAGAAAGCTCATTCTCCGCTGAAATTGCTGGCCGGGCAGCAGAAGAATCTGATGCTATTGGCCATCGGACTGATGGTGATCTCGACCGGCATTAACTACATGCTGAATTATGTCCCCACCTATGCCACCAAAAGCCTGCACCTCTCTGGGACGGCGGCGTTCAGCGCCACCCTGTTAGCCGGGGTTATTCTGACGGTGGTCACGCCATTGATGGGGCTTTGGGCGGAGAAAATAGGGCGCACACCGCTGATGTGGGGATCGCTTATCTTGCTGATCCTGACGATTTACCCGGCCTTCCTGCTGGTGGTGAACCGTCCTACGGCGGGAATGCTGCTGATGCTGGTGGGATGGATGGCGTTGCTGAAATCGGTTTATTTCTCGACGGTGCCGTCAATGATGGCCGATCTGTTCCCAATGACCACCAGGGCCAGCGGGATGGCGATCAGCTACAACATCGCCGTGACGGTGTTTGGTGGTTTTGCGCCCTTAATCTGTACCCTGTTGATTACCGCTACCGGAACAAGTTTAGCGCCAAGCTATTATCTAATGGCACTGGCATTGCTCAGCGGATGGGCGTTGTATAAAACCCAGTCGCTAAAACGCGTAACGGCATAA > 461 EbC_20770 silverDB:661Eb02794 acyl-CoA_dehydrogenase/oxidase YP_003741458.1 11 MSEVTYPDYEILAARFRPIFNQIAEGAVAREHQRTLADEPIRWLKQAGFGTLRIPVDQGGLGASLPQLFQLLTELAEADSNLPQALRAHFAFVEDRLNQPDSEGRRQWFSRFADGELVGSGWSEIGNLKLGEIKTRVSPGENGWRLNGEKFYSTGTLYADWIDVFAKRTDNDRDVIALVSTHQPAVQRDDDWDGFGQRLTGSGTTRFNEAEVEQAHVYDFSERFRYQTAFYQHVLLATLAGIGRAVSRDAAQGVAARKRIYSHGNAPLVKQDVQVLQVVGQIDSWAWAVESAVQRAGHSLQRAFDVEHQGGSEEAIQQANVQAELEAAKAQVIATELIPRAATELFNALGASDTRVSKALDRHWRNARTVASHNPVIYKIRNVGDWAVNGREPTFIWQIGNGE gamma_subgroup Erwinia_billingiae_Eb661 Erwinia_billingiae_Eb661 NC_014306 2344118..2345581 Kube,M.,_Migdoll,A.M.,_Gehring,I.,_Heitmann,K.,_Mayer,Y.,_Kuhl,H.,_Knaust,F.,_Geider,K._and_Reinhardt,R. NA 1456:>1464 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FP236843.This_project_was_carried_out_by*Max_Planck_Institute_for_Molecular_Genetics,_Berlin,_Germany_(principle_investigator);--------------_Genome_Center_Center:_Max_Planck_Institute_for_Molecular_Genetics_Center_code:_MPIMG--------------.COMPLETENESS:_full_length. NA 25-JAN-2012 Erwinia_billingiae_Eb661_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Erwinia_billingiae_D8MS00_ERWBE.gb Erwinia_Winslow_et_al._1920_(Approved_Lists_1980)_emend._Hauben_et_al._1999 300714588 BMC_Genomics_11,_393_(2010) NA NC_014306 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20565991 1464 NA genomic_DNA NA Eb661 NA Erwinia_billingiae_Mergaert_et_al._1999 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 634500 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Erwinia Genome_comparison_of_the_epiphytic_bacteria_Erwinia_billingiae_and_E._tasmaniensis_with_the_pear_pathogen_E._pyrifoliae NA NC_014306.1 ATGAGCACGATTAATCTTGAGGGCGAACGGATACTCCCGCCGCCGCATTCAACACCGATAAGCTCTGTCAGTGACGTGGCAAACGTCATTAACAGCAGCAGCAGTAAAAACAGCTACGCCCGCTGGATCGTGTTTCTGGCACTGGGCGGCGTCTTCCTCGATGCCTACGATCTGACCACGCTGTCCTACGGGATTGATGACGTGGTGAAAGAGTTCGGGCTGACGCCAACCCTGACCGGGCTGGTGACCTCGTCGATCATGATCGGCACCATCGTCGGCAACCTGGTCGGCGGCTGGCTGACCGATAAGTACGGCCGCTACTCGGTATTTATGGCCGACATGCTGTTTTTTGTGGTGTCGGCGATCGCTGCTGGCCTGGCACCGAACGTCTGGGTGCTGATCGGCGCGCGTTTCCTGATGGGCGTCGGCGTCGGGATTGATTTGCCGGTGGCGATGGCCTACCTGGCGGAATTCTCTAAATTCACCGGCAAGGGCAATAAAGCCTCGCGGCTGGCAGCCTGGTGCCCGATGTGGTACGCCGCGTCCTCGGCCTGTTTCTTTATCATTTTTGCCCTCTATTTCCTGCTGCCGAAAGAGCATCTGGACTGGCTGTGGCGCGCATCGCTGCTGTTTGGCGCGGTGCCTGCGCTGCTGATCATCGCCGTGCGCAGCAAGTTTATGAATGAATCGCCGCTGTGGGCGGCCAATCAGGGCGATCTGAGTGGTGCGGTGCGCATCCTGCGCGATTCCTACGGCATCGTTGCCCACGAAGCTGAGCCAGAAAAGCCGGCGATTGAGAAAAAAGCGCCGCCTAAGGTCAGCTTCCGCGTGCTGTTCCAGAAACCCTATCTGGAGCGCACCGTGGTGACCGCGGTGATGAACGTCTGTATCTCGTTTGAATACACCGCGATTGCCTTCTTCCTGCCGTCGATTCTGGCGCAGTTCCTGGGCGCCGGCGTGTTTGAAACCATCTCCGCCTCACTTGGCCTTAACGCGCTGTTTGCCTTTACCGGCGGCCTGTTGGGCATGCGCCTGGCGTGGAAATTCCCGTCACGGCATGTGGCGATCGCCGGCTTTGCGCTGCAGTTTATTGCGCTGATTTCGCTGGCGCTGGTCGGCCATCCTGAAGCGACCGCCGGGGTGGTGTTTGCCATGCTGATGCTGGGTCTGTGGCTGTTCGCCGAAGGTTTTGGCCCTGGCGCGCAGATGATGATCTATCCGGCGCTCTCTTATCCTACCCATATTCGCGCCACCGGCGTCGGCTTTGGCCGCTCGCTGTCAGGCATTGGCAGCGCGCTGGCGCTGTTTATCCTGCCGATCCTGCAGGCGGCGTACGGCACCAATATGTTCTGGATTGTCTCGCTGGCCGCCATTATCCCGATTTTCTTCCTGCTGATTATTCGCTTCGAACCGACCCGTCAGGACATTGACACCGAACACGAAACTGGAGAACACCATGTCTGA > 462 EPYR_00630 Major_facilitator_superfamily,_TC_2.A.1.6.-The_Metabolite:H+_Symporter_(MHS)_Family putative_MHS_family_MFS_transporter CAY72994.1 11 MSTPQNHAQDMALSAVSAADERLTTREGRKDFWRATLSCWLGTAMEYADFALYGLAAGIIFGDVFFPESTPAMALLSTFATWSVGFIARPIGALFFGWLGDRKGRKTVMISTIILMGVSTTLIGLIPSYASIGLWAPACLVLLRFSQGFGAGAELSGGTVTLAEYAPTRRRGLVSSIIALGSNSGTLLASLVWLAVVQMDQQSLLEWGWRIPFLCSSLIALVALWIRRNLKETPVFERKKAEMETQRAQVLATRSQVQDTRSFWRRSRAFLTMVGLRIGENGPSYLAQGFIIGYVVKVLAVDKSVATSAVLIASLLGFLIIPLAGWLSDRFGRRITYRWFCLLLIIYAFPAFMLLDSREPAIVIATIVTGMGLASLGIFGVQAAWGVEMFGVHHRYTKMATAKELGSILSGGTAPLVAAALLSWTGHWWPIATYFAVMATIGFLTTFVAPETRGRDLNAAEDAI gamma_subgroup Erwinia_pyrifoliae_DSM_12163 Erwinia_pyrifoliae_DSM_12163 FN392235 698881..700275 Smits,T.H.,_Jaenicke,S.,_Rezzonico,F.,_Kamber,T.,_Goesmann,A.,_Frey,J.E._and_Duffy,B. NA 0:1395 NA NA 07-JAN-2010 Erwinia_pyrifoliae_DSM_12163_complete_genome,_culture_collection_DSM:12163. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Erwinia_pyrifoliae_D2T3Q1_ERWP6.gb Erwinia_Winslow_et_al._1920_(Approved_Lists_1980)_emend._Hauben_et_al._1999 283476464 BMC_Genomics_11,_2_(2010) NA FN392235 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20047678 1395 NA genomic_DNA NA DSM_12163 NA Erwinia_pyrifoliae_Kim_et_al._1999 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 644651 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Erwinia Complete_genome_sequence_of_the_fire_blight_pathogen_Erwinia_pyrifoliae_DSM_12163T_and_comparative_genomic_insights_into_plant_pathogenicity NA FN392235.1 ATGTCTACACCTCAAAACCATGCACAGGATATGGCTTTATCAGCCGTTTCTGCGGCAGATGAACGTCTCACCACTCGCGAAGGGCGCAAAGATTTCTGGCGCGCCACCCTGTCATGTTGGCTGGGTACTGCGATGGAATATGCCGATTTTGCGCTATACGGACTGGCCGCCGGTATTATTTTTGGCGATGTCTTCTTCCCCGAATCGACGCCTGCCATGGCACTGCTTTCTACCTTCGCTACCTGGTCGGTTGGTTTTATTGCCCGCCCGATTGGTGCACTCTTCTTCGGTTGGCTGGGTGACCGTAAAGGTCGCAAAACGGTAATGATCTCTACCATTATCCTGATGGGCGTCTCAACCACCCTTATTGGTCTTATTCCCAGCTACGCGTCGATTGGCCTGTGGGCGCCGGCCTGTTTAGTGCTATTGCGTTTCAGTCAGGGCTTCGGTGCCGGGGCGGAACTCTCCGGAGGCACGGTGACGCTGGCCGAATATGCGCCTACGCGGCGGCGCGGCCTTGTTTCCTCGATCATCGCACTGGGTTCAAACAGCGGTACGCTATTGGCTTCCCTGGTTTGGCTGGCGGTGGTGCAGATGGACCAGCAGTCACTGCTGGAATGGGGCTGGCGCATTCCGTTTCTGTGCAGCTCGCTGATTGCGCTGGTCGCGTTGTGGATCCGCCGTAACCTGAAAGAAACTCCGGTATTCGAACGTAAAAAAGCCGAGATGGAAACGCAGCGTGCACAGGTGCTGGCTACACGGTCACAGGTCCAGGATACGCGTTCTTTCTGGCGTCGTAGCCGTGCTTTTCTGACCATGGTCGGTCTGCGTATCGGTGAGAATGGTCCTTCCTATCTGGCCCAGGGCTTTATTATCGGCTATGTGGTCAAAGTGCTGGCGGTAGATAAGTCGGTCGCCACCAGCGCGGTCTTAATTGCTTCACTGCTGGGCTTTCTGATCATACCGCTGGCTGGCTGGCTTTCGGATCGCTTTGGTCGCCGCATTACTTACCGTTGGTTCTGTCTGCTGTTAATCATCTATGCTTTCCCGGCCTTTATGCTGCTGGATTCGCGTGAACCCGCCATTGTCATTGCCACTATTGTGACGGGCATGGGGCTGGCATCGTTGGGGATCTTTGGCGTGCAGGCAGCGTGGGGCGTGGAAATGTTTGGCGTGCATCATCGCTATACTAAAATGGCCACGGCCAAAGAGCTGGGGTCGATTCTATCTGGTGGAACAGCACCGCTGGTGGCGGCGGCACTGCTTTCCTGGACAGGGCACTGGTGGCCGATTGCCACCTATTTTGCGGTGATGGCGACTATTGGTTTCCTTACCACCTTCGTGGCACCGGAAACGCGTGGGCGCGATCTTAATGCGGCAGAAGATGCGATATAA > 463 EPYR_02349 Proline/betaine_transporter,_TC_2.A.1.6.4_Proline/betaine_transporter Proline/betaine_transporter CAY74729.1 11 MLCYRFLRPLFHSFQGEESYLWQQSGALMGDTSAGQQPQKQHFWNKNKPASQELHIDDITIVDNSMLKRAVGAAALGNAMEWFDFGVYSYLAVTIGKVFFPGGSPAAQLLATFGAFAAAFLVRPVGGLVVGPLGDRIGRQKVLAITMMMMSIGTFCIGIIPGYHSIGIMAPVLLLLARLLQRFSTGGEYGGAATFIAEYSTDERRGFMGSQAAYAP gamma_subgroup Erwinia_pyrifoliae_DSM_12163 Erwinia_pyrifoliae_DSM_12163 FN392235 2420359..2421009 Smits,T.H.,_Jaenicke,S.,_Rezzonico,F.,_Kamber,T.,_Goesmann,A.,_Frey,J.E._and_Duffy,B. NA 0:651 NA NA 07-JAN-2010 Erwinia_pyrifoliae_DSM_12163_complete_genome,_culture_collection_DSM:12163. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Erwinia_pyrifoliae_D2TD45_ERWP6.gb Erwinia_Winslow_et_al._1920_(Approved_Lists_1980)_emend._Hauben_et_al._1999 283476464 BMC_Genomics_11,_2_(2010) NA FN392235 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20047678 651 NA genomic_DNA NA DSM_12163 NA Erwinia_pyrifoliae_Kim_et_al._1999 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 644651 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Erwinia Complete_genome_sequence_of_the_fire_blight_pathogen_Erwinia_pyrifoliae_DSM_12163T_and_comparative_genomic_insights_into_plant_pathogenicity NA FN392235.1 TTACGGCGCATACGCAGCTTGACTTCCCATAAAGCCACGGCGTTCATCGGTTGAGTACTCGGCGATAAAGGTTGCCGCTCCGCCGTATTCGCCACCGGTTGAGAACCGCTGTAACAAACGTGCCAGCAGCAGCAGTACCGGTGCCATAATCCCTATCGAATGATACCCGGGAATAATCCCGATACAGAAGGTGCCAATCGACATCATCATCATGGTGATCGCCAGTACTTTCTGACGCCCAATGCGGTCACCAAGCGGCCCGACGACCAGTCCACCGACCGGGCGCACCAGGAACGCGGCGGCGAAGGCACCAAAAGTAGCCAGCAGCTGTGCCGCCGGGCTGCCGCCGGGGAAAAACACCTTGCCGATAGTGACGGCAAGATAGCTGTACACGCCGAAATCGAACCACTCCATCGCATTACCGAGCGCGGCGGCACCGACAGCGCGTTTCAGCATCGAGTTATCAACAATCGTGATGTCGTCAATGTGGAGTTCCTGGCTGGCCGGCTTGTTTTTGTTCCAGAAATGTTGTTTTTGAGGCTGCTGCCCCGCTGACGTATCGCCCATTAGCGCTCCCGATTGTTGCCACAGATAACTTTCCTCGCCCTGAAATGAGTGAAATAGTGGTCGGAGAAAGCGATAGCACAGCAC > 464 ELI_06090 COG0477_Permeases_of_the_major_facilitator_superfamily major_facilitator_family_transporter YP_458107.1 11 MRDAAASKGREPSENEIKLVIGASSAGTIFEWYDFFIYGTLAYILKDAFYDVDNETLGLLLVWSTFAVGFAFRPIGAVLFGFLGDKLGRKYTFLVTVTLMGIATAGVGLIPTVATIGIAAPIIVILLRVIQGLALGGEYGGAAIYVAEHAPPEKRGFYTSFIQASVAGGFVLSIAVVLACRFLIPEDDFVAWGWRVPFLLSIILLGISLWMRLKLSESPVFQAMKAEGQIAGNPFVESFTYPGNKKRIFVALFGVTGILTTIWYTAFFSGMSFLRGPMHVADLTVELILFVSGLIAMTFYVMIGKWSDTIGRKKPIMIGAVLTLLLLFPAFWGLGSLANPGLERAAAETPITVSGPQCTTDPFADLFDREQTDCGKVLETLTASGVPYTLEAGETLTLSAGGQAIAIDPAWFEDGTARREGIRAALGEYGFDFSKQQPGMGNILGIVAILLGLGMLSALTYGSVAALLSEMFPPRIRYSSMSIPYHIGAGYLGGFLPLIAGVIVASTGNIYSGLWYTWIVVAIGIVVLWWGVPDGPPRDFEDAPAT alpha_subgroup Erythrobacter_litoralis_HTCC2594 Erythrobacter_litoralis_HTCC2594 NC_007722 1260226..1261866 Oh,H.M.,_Giovannoni,S.J.,_Ferriera,S.,_Johnson,J._and_Cho,J.C. NA 0:1641 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000157.Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation.COMPLETENESS:_full_length. NA 09-SEP-2011 Erythrobacter_litoralis_HTCC2594_chromosome,_complete_genome. NA Erythrobacteraceae_Lee_et_al._2005 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Erythrobacter_litoralis_Q2NAI1_ERYLH.gb Erythrobacter_Shiba_and_Simidu_1982 85372828 J._Bacteriol._191_(7),_2419-2420_(2009) NA NC_007722 NA NA Sphingomonadales purple_photosynthetic_bacteria_and_relatives 19168610 1641 NA genomic_DNA NA HTCC2594 NA Erythrobacter_litoralis_Yurkov_et_al._1994 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 314225 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Sphingomonadales,_Erythrobacteraceae,_Erythrobacter Complete_genome_sequence_of_Erythrobacter_litoralis_HTCC2594 NA NC_007722.1 ATGAGAGACGCAGCAGCATCGAAGGGACGCGAGCCGAGCGAGAACGAGATCAAACTCGTCATCGGTGCCTCGTCCGCCGGGACCATCTTCGAATGGTACGATTTCTTCATCTACGGGACGCTCGCCTATATCCTCAAGGATGCGTTCTACGACGTCGACAACGAAACGCTGGGCTTGTTGCTGGTCTGGTCGACTTTTGCCGTGGGATTCGCCTTCCGCCCGATCGGCGCCGTGCTGTTCGGTTTCCTTGGAGACAAGTTGGGGCGCAAATATACCTTCCTCGTCACAGTGACCCTGATGGGTATAGCAACCGCAGGGGTCGGCCTGATACCGACCGTCGCGACGATCGGAATCGCGGCTCCGATCATCGTTATCCTGTTGCGCGTGATTCAGGGCCTGGCGCTGGGCGGGGAATACGGTGGCGCTGCCATCTATGTTGCCGAGCATGCCCCGCCGGAAAAGCGCGGCTTCTACACCAGCTTCATCCAGGCCAGTGTGGCCGGCGGCTTCGTCCTTTCTATTGCTGTCGTATTGGCGTGCCGCTTTCTTATTCCCGAGGATGATTTCGTGGCATGGGGCTGGCGCGTGCCGTTCCTGCTGTCGATCATTCTGCTTGGCATTTCGCTATGGATGCGGCTCAAACTGTCGGAAAGTCCGGTCTTTCAGGCGATGAAGGCAGAAGGCCAGATCGCCGGCAATCCCTTCGTCGAAAGTTTCACATATCCCGGCAACAAGAAGCGCATCTTCGTCGCCCTGTTCGGCGTGACCGGCATCCTGACCACGATCTGGTACACGGCCTTCTTCAGCGGGATGAGCTTCTTGCGCGGGCCGATGCATGTGGCCGACCTGACCGTGGAATTGATCCTGTTCGTGTCCGGCCTGATCGCCATGACTTTCTACGTCATGATCGGCAAATGGTCCGACACCATAGGACGCAAGAAACCAATCATGATCGGTGCAGTGTTGACGCTCCTGCTGCTGTTTCCGGCCTTCTGGGGCCTCGGTAGTCTTGCCAATCCCGGGCTTGAGCGAGCTGCGGCGGAAACGCCGATCACGGTCAGCGGGCCGCAATGCACGACCGATCCCTTCGCCGACCTCTTCGACCGCGAACAAACCGATTGCGGCAAGGTTCTCGAAACTCTGACCGCGTCGGGCGTGCCATATACTCTGGAAGCCGGCGAAACGCTGACGCTGAGTGCAGGCGGTCAGGCCATCGCGATCGATCCTGCATGGTTCGAAGACGGCACCGCTCGGCGCGAGGGAATCCGCGCGGCGCTGGGCGAATACGGATTCGACTTTTCGAAGCAGCAGCCCGGCATGGGCAATATCCTCGGCATCGTGGCAATTCTGCTCGGTCTGGGCATGCTTTCCGCGCTGACCTACGGCTCGGTCGCGGCACTGCTGTCGGAGATGTTCCCGCCGCGCATCCGCTACAGTTCCATGTCGATACCCTATCACATCGGGGCCGGCTATCTCGGCGGTTTCCTGCCGCTCATCGCGGGCGTGATCGTTGCCAGTACAGGTAATATCTATTCGGGGCTGTGGTACACCTGGATCGTGGTCGCCATCGGTATCGTCGTCTTGTGGTGGGGCGTTCCCGACGGACCGCCGCGCGACTTCGAAGACGCGCCGGCGACCTGA > 465 ESCAB7627_1279 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 putative_lipoprotein EDS92498.1 11 MLRILFTCSLLLLSGCSHMANDSWSGQDKAQHFITSAMLSAAGNEYAQHQGMSRDRSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDFAWDVAGATTGYTVWQQARH gamma_subgroup Escherichia_albertii_TW07627 Escherichia_albertii_TW07627 ABKX01000003 4808..6106 Sutton,G.,_Whittam,T.S._and_Sebastian,Y. NA 1295:>1299 DNA_Source:_STEC_CenterNational_Food_Safety_and_Toxicology_Center_(NFSTC)Michigan_State_University_(MSU)http://foodsafe.msu.edu/This_version_of_the_genome,_JCVI-gea1-v1.0,_represents_roughly6.89x_Sanger_coverage_and_23.37x_454_coverage_of_the_genome.Annotation_was_added_to_the_contigs_in_March_2008. NA 17-MAR-2008 Escherichia_albertii_TW07627_gcontig_1109867046228,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_albertii_B1EIR0_9ESCH.gb Escherichia_Castellani_and_Chalmers_1919 169252574 Unpublished NA ABKX01000003 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1299 NA genomic_DNA NA TW07627 NA Escherichia_albertii_Huys_et_al._2003 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 502347 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Annotation_of_Escherichia_albertii_TW07627 NA ABKX01000003.1 ATGGCAGAAAGTACTGTAACGGCAGACGGCAAACTGACAAGTAGTGATGCTCGTCGCCGCATTTGGGCAATTGTGGGGGCCTCTTCAGGTAATCTGGTCGAGTGGTTCGATTTCTATGTCTACTCGTTCTGTTCCCTCTACTTCGCCCACATCTTCTTCCCTTCTGGTAACACGACCACTCAACTACTACAAACAGCCGGTGTTTTTGCTGCGGGCTTTCTGATGCGTCCAATCGGCGGCTGGTTATTTGGATGCATAGCCGATAGACATGGGCGTAAAAAATCAATGCTGTTATCGGTGTGTATGATGTGCTTTGGATCTCTGGTTATCGCCTGCTTACCTGGCTACGAAACAATCGGTACATGGGCTCCGGCATTATTGCTTCTTGCTCGTTTATTCCAGGGGTTATCTGTTGGCGGAGAATATGGCACCAGTGCCACTTATATGAGTGAAGTTGCTGTTGAAGGGCGCAAAGGTTTTTATGCATCATTTCAGTATGTGACGTTGATTGGCGGACAACTGCTAGCACTACTGGTTGTAGTGGTTTTACAACACACCATGGAAGACGCTGCACTCAGAGAGTGGGGATGGCGTATTCCTTTTGCGTCAGGAGCTGTGTTAGCTGTTGTGGCGTTGTGGTTACGTCGTCAGTTAGATGAAACTTCACAACAAGAAACACGCGCTTTAAAAGAAGCTGGATCTTTGAAAGGATTATGGCGCAATCGCCGAGCATTCATCATGGTTCTCGGTTTTACCGCGGCGGGTTCGCTTTGTTTCTATACTTTCACCACCTATATGCAGAAGTATCTGGTGAATACCGCAGGAATGCACGCCAATGTAGCGAGCGGCATTATGACCGTGGCACTGTTTGTATTTATGCTCATTCAGCCGCTAATTGGCGCGCTATCGGATAAGATTGGTCGCCGCACTTCGATGTTATGCTTCGGCTCTCTGGCGGCCATTTTTACCGTTCCTGTTCTCTCAGCATTGCAGAATGTTTCCTCGCCTTATGCCGCTTTTGGTCTGGTGATGTGCGCCCTGCTGATAGTGAGTTTTTATACTTCAATCAGTGGAATACTGAAGGCTGAGATGTTCCCGGCACAGGTTCGCGCATTAGGCGTTGGTCTGTCATATGCGGTCGCCAATGCTATATTTGGTGGTTCGGCGGAGTACGTAGCGTTGTCGCTGAAATCAACAGGAATGGAAACAGGCTTCTTCTGGTATGTGACATTGATGGCCGTGGTGGCGTTTCTGGTTTCTCTGATGTTGCATCGCAAGGGGAAAGGGATGCGTCTTTAG > 466 APECO1_1937 NA metabolite_transport_protein_YaaU YP_851248.1 11 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFEEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG gamma_subgroup Escherichia_coli_APEC_O1 Escherichia_coli_APEC_O1 NC_008563 48424..49755 Johnson,T.J.,_Kariyawasam,S.,_Wannemuehler,Y.,_Mangiamele,P.,_Johnson,S.J.,_Doetkott,C.,_Skyberg,J.A.,_Lynne,A.M.,_Johnson,J.R._and_Nolan,L.K. NA 0:1332 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000468.Growth_conditions_for_DNA_isolation:_37C,_12_hr,_LB_broth._Strainavailable_upon_request_from_authors_Lisa_Nolan_or_Tim_Johnson,email_to:_timjohns@iastate.edu.COMPLETENESS:_full_length. NA 26-JAN-2012 Escherichia_coli_APEC_O1_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_A1A794_ECOK1.gb Escherichia_Castellani_and_Chalmers_1919 117622295 J._Bacteriol._189_(8),_3228-3236_(2007) NA NC_008563 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 17293413 1332 NA genomic_DNA NA APEC_O1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 405955 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_genome_sequence_of_avian_pathogenic_Escherichia_coli_strain_O1:K1:H7_shares_strong_similarities_with_human_extraintestinal_pathogenic_E._coli_genomes NA NC_008563.1 ATGCAACCGTCCAGAAACTTTGATGATCTTAAATTCTCCTCTATTCACCGCCGCATTTTGCTGTGGGGAAGCGGTGGTCCGTTTCTGGATGGTTATGTACTGGTAATGATTGGCGTGGCGCTGGAGCAACTGACTCCGGCGCTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGCTATATCTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTCTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTTATCGGTGCGGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCGATGTGGTATGTCGGCGCGACCTGCGCCGATTTGGTCGGCTATTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCAGCGATTCCCTGTTTATTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTGTTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATAAAACTGTTTGGCGAACCGGTGGCTTTCGAGGAAGAGCAGCCGCAGCAAACCCGTTTTCGCGATCTGTTTAATCGCCGCCATTTTCCTTTTGTTCTGTTTGTTGCCGCCATCTGGACCTGCCAGGTGATCCCAATGTTCGCCATTTACACCTTTGGCCCGCAAATCGTTGGTTTGTTAGGATTGGGGGTTGGCAAAAACGCGGCGCTGGGGAACGTGGTGATTAGTCTGTTCTTTATGCTCGGCTGTATTCCGCCGATGCTGTGGCTAAACACTGCCGGACGGCGTCCATTGTTGATTGGCAGCTTTGCCATGATGACGCTGGCGCTGGCGGTTTTGGGGCTGATCCCGGATATGGGGATCTGGCTGGTAGTGATGGCCTTTGCGGTGTATGCCTTTTTCTCTGGCGGGCCGGGTAATTTGCAGTGGCTCTATCCTAATGAACTCTTCCCGACGGATATCCGCGCCTCTGCCGTGGGCGTGATTATGTCCTTAAGCCGTATTGGCACTATTGTATCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTATTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAGACCAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAA > 467 APECO1_3665 NA arabinose_transporter YP_854081.1 11 MVTINTESALTPRPLRDTRRMNMFVSVAAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEIRESLKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFVGITFWLIPETKNVTLEHIERKLMAGEKLRNIGV gamma_subgroup Escherichia_coli_APEC_O1 Escherichia_coli_APEC_O1 NC_008563 3188297..3189715 Johnson,T.J.,_Kariyawasam,S.,_Wannemuehler,Y.,_Mangiamele,P.,_Johnson,S.J.,_Doetkott,C.,_Skyberg,J.A.,_Lynne,A.M.,_Johnson,J.R._and_Nolan,L.K. NA 0:1419 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000468.Growth_conditions_for_DNA_isolation:_37C,_12_hr,_LB_broth._Strainavailable_upon_request_from_authors_Lisa_Nolan_or_Tim_Johnson,email_to:_timjohns@iastate.edu.COMPLETENESS:_full_length. NA 26-JAN-2012 Escherichia_coli_APEC_O1_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_A1AF52_ECOK1.gb Escherichia_Castellani_and_Chalmers_1919 117622295 J._Bacteriol._189_(8),_3228-3236_(2007) NA NC_008563 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 17293413 1419 NA genomic_DNA NA APEC_O1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 405955 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_genome_sequence_of_avian_pathogenic_Escherichia_coli_strain_O1:K1:H7_shares_strong_similarities_with_human_extraintestinal_pathogenic_E._coli_genomes NA NC_008563.1 TCAGACGCCGATATTTCTCAACTTTTCGCCTGCCATCAGTTTGCGCTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTGATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAACGTACCGGCAGCGCCAATGCTATCAAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACCCAGTTTGTCGTCGTTGAGCAGGTGATGCCAAAATCGCGGCATTTCAGCGGCTGAATTTCAGAGCACAAGATCCACACCACTGGCGCGGCGCTCATCGCATAACCGGCAATACACATCATCGTCATGCCAACAGAGAGCCAGGACAAGCCACTGGAAGCCGTACCGTTATCAAACTGCATCAGGCAGTAACCCAGCACCAGAGTGCCTAACGCCATCACGCTGAAACCAATTTTCAGAGCCGGCTTACGCCCTGCTTTATCTACCGTAAAGACCGCAATGAAGGTAGCGAACATAAAGGTCAGCCCCACGACCAGAGTCGCAATCATCTGTTGTTCTGTGGTCGTAAAGCCCGCCATTTTGAAGATACGTGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAATACAGCACGACGGACGTTACGGTTGATCTTAAACAGTGCCCAACCGCCCTGTTTTAACTTCAGGCTTTCACGAATTTCGTTGAGTTCTTCTCGCGCTTTTTCCGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCGCCAGCCAGCGCGGGCTATTTGGCAGGAAGACCACCAGAATAATCAGCAGGACTGCTGGTAAAGCAAGAACCCCCAACATTGCGCGCCAGTTACCGCTATAACTGAACGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATGCTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATATAGAGGAGCGGTGTAAGACGCGATCCCAACAGCAATGCCCAACACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATCGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTACGCCCCAGGCGGAACGACAGCCACCCATTAAACAGCGCACCAATTGCTGCGCCGAGCATCATGCTACTGACCACCCATTCCTGCAAACGGCTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAGAGGACGTGGCGTTAAAGCAGATTCCGTATTGATAGTAACCAT > 468 EcE24377A_0049 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter YP_001461217.1 11 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDMEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVVFAPETRGMSLAQTSNMTIRGQRMG gamma_subgroup Escherichia_coli_E24377A Escherichia_coli_E24377A NC_009801 49004..50335 Rasko,D.A.,_Rosovitz,M.J.,_Myers,G.S.,_Mongodin,E.F.,_Fricke,W.F.,_Gajer,P.,_Crabtree,J.,_Sebaihia,M.,_Thomson,N.R.,_Chaudhuri,R.,_Henderson,I.R.,_Sperandio,V._and_Ravel,J. NA 0:1332 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000800.Source_DNA_and_bacteria_available_from_Jacques_Ravel(jravel@tigr.org).COMPLETENESS:_full_length. NA 24-JAN-2012 Escherichia_coli_E24377A_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_A7ZHD8_ECO24.gb Escherichia_Castellani_and_Chalmers_1919 157154711 J._Bacteriol._190_(20),_6881-6893_(2008) NA NC_009801 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18676672 1332 NA genomic_DNA NA E24377A NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 331111 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_pangenome_structure_of_Escherichia_coli:_comparative_genomic_analysis_of_E._coli_commensal_and_pathogenic_isolates NA NC_009801.1 ATGCAACCGTCCAGAAACTTTGACGATCTCAAATTCTCCTCTATTCACCGCCGCATTTTGCTGTGGGGAAGCGGTGGTCCGTTTCTGGATGGTTATGTACTGGTAATGATTGGCGTGGCGCTGGAGCAACTGACTCCGGCGCTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGTGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGCTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGCTACTGGCTTTATGATATGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATCAAACTGTTTGGCGAACCGGTGGCTTTCGATGAAGAGCAGCCGCAGCAAACCCGTTTTCGCGATCTGTTTAATCGCCGCCATTTTCCTTTTGTTCTGTTTGTTGCCGCCATCTGGACCTGCCAGGTGATCCCAATGTTCGCCATTTACACCTTTGGCCCGCAAATCGTTGGTTTGTTGGGATTGGGGGTTGGCAAAAACGCGGCACTGGGGAACGTGGTGATTAGCTTGTTCTTTATGCTCGGCTGTATTCCGCCGATGCTGTGGCTAAACACTGCCGGACGGCGTCCATTGTTGATTGGCAGCTTTGCCATGATGACGCTGGCGCTGGCGGTTTTGGGGCTGATCCCGGATATGGGGATCTGGCTGGTAGTGATGGCCTTTGCGGTGTATGCCTTTTTCTCTGGCGGGCCGGGTAATTTGCAGTGGCTCTATCCTAATGAACTCTTCCCGACAGATATCCGCGCCTCTGCCGTGGGCGTGATTATGTCCTTAAGCCGTATTGGCACCATTGTTTCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTGTTTGGCTTGTTGATTTCCGTAGTGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAAACCAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAA > 469 EcE24377A_2434 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_transporter YP_001463490.1 11 MTQRRDLQALIDAAPVGKMQWRVIICCFLVVMLDGFDTAAIGFIAPDIRTHWQLTAGDLAPLFGAGLLGLTAGALLCGPLSDRFGRKRVIELCVFLFGALSLASAFSPDLQTLVFLRFLTGLGLGGAMPNTITITSEYLPARRRGALVTLMFCGFTLGSAFGGIVSAQLVPVIGWHGILVLGGVLPLMLFVALLVVLPESPRWQVRRQLPQAVIAKTVSAITRERYVDTHFYLIESASVTKGSIRQLFMGRQLPITLMLWVVFFMSLLIIYLLSSWMPTLLNHRGIDLQHASWVTAAFQIGGTLGALALGVLMDKFNPFRVLALSYAIGAVCIVMIGLSQDGLWLMALAIFGTGIGISGSQVGLNALTATLYPTQSRATGVSWSNAVGRCGAIVGSLSGGVMMAMNFSFDTLFFIIAVPAAISAVMLALLITVVRQSTSVPDSLPRAGVVNE gamma_subgroup Escherichia_coli_E24377A Escherichia_coli_E24377A NC_009801 2416486..2417844 Rasko,D.A.,_Rosovitz,M.J.,_Myers,G.S.,_Mongodin,E.F.,_Fricke,W.F.,_Gajer,P.,_Crabtree,J.,_Sebaihia,M.,_Thomson,N.R.,_Chaudhuri,R.,_Henderson,I.R.,_Sperandio,V._and_Ravel,J. NA 0:1359 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000800.Source_DNA_and_bacteria_available_from_Jacques_Ravel(jravel@tigr.org).COMPLETENESS:_full_length. NA 24-JAN-2012 Escherichia_coli_E24377A_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_A7ZNW1_ECO24.gb Escherichia_Castellani_and_Chalmers_1919 157154711 J._Bacteriol._190_(20),_6881-6893_(2008) NA NC_009801 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18676672 1359 NA genomic_DNA NA E24377A NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 331111 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_pangenome_structure_of_Escherichia_coli:_comparative_genomic_analysis_of_E._coli_commensal_and_pathogenic_isolates NA NC_009801.1 TTATTCGTTCACAACGCCCGCGCGAGGCAGTGAGTCAGGGACAGAGGTCGACTGGCGAACCACGGTAATCAGCAAGGCTAACATCACCGCACTGATCGCCGCGGGCACAGCGATAATGAAAAACAGGGTGTCGAAAGAGAAATTCATCGCCATCATCACGCCGCCAGAAAGCGAGCCAACAATCGCACCGCAGCGACCCACGGCGTTTGACCAGCTCACGCCCGTGGCGCGACTTTGTGTTGGATAAAGTGTGGCGGTCAGCGCATTCAGCCCCACCTGCGATCCGCTAATACCAATGCCGGTGCCGAAAATCGCCAGCGCCATCAGCCATAATCCGTCCTGGCTTAAGCCAATCATCACGATGCATACAGCGCCTATGGCATAGCTCAGCGCCAGTACGCGGAAAGGATTGAACTTATCCATCAGCACACCCAGCGCCAGCGCGCCTAACGTACCACCAATCTGGAACGCGGCGGTGACCCAGGACGCGTGTTGCAGGTCGATGCCGCGATGGTTCAATAGCGTCGGCATCCAGCTTGAGAGCAGGTAAATAATCAGCAGGCTCATAAAGAACACTACCCACAGCATCAACGTGATGGGTAACTGACGTCCCATAAACAGTTGACGAATGCTGCCTTTTGTAACGGAGGCTGATTCAATGAGATAAAAGTGGGTATCGACATAACGCTCGCGGGTGATGGCGCTGACGGTTTTCGCAATCACCGCCTGCGGTAGCTGGCGGCGCACCTGCCAGCGTGGCGATTCCGGCAGAACTACCAGCAGTGCGACAAACAGCATCAGCGGTAACACGCCCCCCAACACCAGAATGCCGTGCCAGCCAATCACCGGCACCAGCTGCGCGCTAACAATCCCGCCAAACGCCGAACCCAGCGTAAAGCCGCAAAACATCAGCGTCACCAGCGCGCCGCGGCGGCGGGCAGGCAGATATTCCGAGGTTATGGTGATGGTGTTTGGCATCGCGCCACCCAGCCCAAGGCCGGTTAGGAAACGCAGGAATACCAGCGTTTGCAGATCCGGTGAGAAAGCCGAGGCAAGGCTTAACGCGCCAAACAAAAAGACGCACAGCTCAATCACCCGTTTGCGACCAAAGCGATCGGACAACGGGCCACAAAGCAGTGCGCCTGCGGTTAACCCCAGCAGACCCGCGCCGAATAGCGGGGCGAGATCGCCTGCGGTGAGTTGCCAGTGAGTGCGAATATCAGGGGCGATAAAGCCGATAGCCGCGGTGTCAAAACCATCGAGCATTACCACCAGAAAACAGCAGATGATAACGCGCCACTGCATCTTGCCGACCGGAGCAGCATCGATCAGTGCTTGTAAATCACGTCGTTGAGTCAT > 470 EcHS_A1853 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter YP_001458549.1 11 MEQYDQIGTRLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVVLAKLVSNGWSNNFLNAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFLLGGIGILLAWLLSGKYFIESPRWLAGKGQIAGAECQLREVEQQIEREKSIRLPPLTSYQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNPGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSTLLIIIAVLGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFIVLGVMLLLCALVLSIFGIETRKVSLEEISEVN gamma_subgroup Escherichia_coli_HS Escherichia_coli_HS NC_009800 1870703..1872061 Rasko,D.A.,_Rosovitz,M.J.,_Myers,G.S.,_Mongodin,E.F.,_Fricke,W.F.,_Gajer,P.,_Crabtree,J.,_Sebaihia,M.,_Thomson,N.R.,_Chaudhuri,R.,_Henderson,I.R.,_Sperandio,V._and_Ravel,J. NA 0:1359 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000802.Source_DNA_and_bacteria_available_from_Jacques_Ravel(jravel@tigr.org).COMPLETENESS:_full_length. NA 26-JAN-2012 Escherichia_coli_HS,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_A8A0W2_ECOHS.gb Escherichia_Castellani_and_Chalmers_1919 157159467 J._Bacteriol._190_(20),_6881-6893_(2008) NA NC_009800 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18676672 1359 NA genomic_DNA NA HS NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 331112 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_pangenome_structure_of_Escherichia_coli:_comparative_genomic_analysis_of_E._coli_commensal_and_pathogenic_isolates NA NC_009800.1 TTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTCGATGCCAAAAATGGAGAGAACCAGCGCACAGAGCAATAACATGACACCAAGTACTATAAACACCGTGATCGACCCATAATGTGTTAATAATGCCGCAACGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGCGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAGCAAACATACATGTATAAAAAGAAGATCATCACCAGGCCATAGATTAAAATCGCCCACTCTGTAGTCTGAATTGAATAGATATAGCCTAACACGGCAATAATAATAAGTAAGGTGGAGCCAAATAACCGACGAGGAAAATGATCAATAATTAATGCCGCAATAAATATTCCTACCGGAGCGCCAATCATAATAACAGCGGTCATTAATATTGATTTATCGACATCAATGCCGGGGTTAACAAATATGGTCGGTATCCATACGGTGATGGTATAAAGCGAAATGTTCATTGCAATTAAAACAGTAATCGCGACTAATGTACGTCGTAACATTTCACCTTTAAACAGGAGCCAGAAAGTACCCTTGATTACTTTAACTTTGCTGTTGCTCTGATACGAAGTAAGCGGGGGTAAACGAATACTCTTCTCTCTTTCAATTTGCTGCTCTACTTCACGAAGTTGGCATTCTGCACCTGCGATTTGCCCTTTCCCTGCCAGCCATCGTGGCGACTCAATAAAGTATTTACCTGAGAGAAGCCAGGCTAACAGTATGCCAATACCACCCAACAGAAACATTATCCGCCAACTAAAAAAAGCGATAACCACCACACCTATCGCCGCAGACAGCATGGGCGACCAGTTACCAACAAATGAGAGCCGCGCGGACCATTTTCCACGCACCGTCGCGGGGATAAACTCCGTAAATGAGGCATAGCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAATCACCGATGAACCCACCGGTAAGAGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGCTTACCAGCTTTGCTAAGACAACATTACCGGAGTAACTCAAAAAACCCGTTAATAACAGACTAAAGCTTATTATACCAAATATACGATAATGAAACCGGGCCAAAGGCAAGCGGTCCAGTCTTGTGCCAATTTGATCATATTGTTCCAT > 471 ECDH10B_2755 NA alpha-ketoglutarate_transporter YP_001731516.1 11 MAESTVTADSKLTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQHTMEDAALREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAIFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMRL gamma_subgroup Escherichia_coli_str._K-12_substr._DH10B Escherichia_coli_str._K-12_substr._DH10B NC_010473 2814235..2815533 Durfee,T.,_Nelson,R.,_Baldwin,S.,_Plunkett,G._III,_Burland,V.,_Mau,B.,_Petrosino,J.F.,_Qin,X.,_Muzny,D.M.,_Ayele,M.,_Gibbs,R.A.,_Csorgo,B.,_Posfai,G.,_Weinstock,G.M._and_Blattner,F.R. NA 0:1299 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000948.DH10B_and_DH10B-T1R_are_available_from_Invitrogen_Corporation(http://www.invitrogen.com).COMPLETENESS:_full_length. NA 23-JAN-2012 Escherichia_coli_str._K-12_substr._DH10B_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B1XBR4_ECODH.gb Escherichia_Castellani_and_Chalmers_1919 170079663 J._Bacteriol._190_(7),_2597-2606_(2008) NA NC_010473 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18245285 1299 NA genomic_DNA NA K-12 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 316385 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_complete_genome_sequence_of_Escherichia_coli_DH10B:_insights_into_the_biology_of_a_laboratory_workhorse NA NC_010473.1 CTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAGGCTGTTTCCATTCCTATTGATTTCAGCGACAACGCTACGTACTCCGCCGAACCACCAAATATAGCATTAGCGACCGCATATGACAGACCAACGCCTAATGCGCGAACCTGTGCCGGGAACATCTCAGCCTTCAGTATTCCACTGATTGATGTATAAAAACTCACTATCAGCAGGGCACACATCACCAGACCAAAAGCGGCATAAGGCGAGGAAACGTTTTGCAATGCTGAGAGAATAGGAACGGTAAAAATGGCTGCCAGCGAACCGAAACATAACATTGAGGTACGGCGACCAATCTTATCCGACAGCGCGCCAATGAGTGGTTGAATAAGCATGAATACAAACAATGCGGCAGTCATAATGCCACTCGCCACGTTGGCATGCATTCCCGCAGTATTTACCAGATACTTCTGCATATAAGTAGTGAAGGTATAGAAACAAAGGGAGCCCGCAGCGGTAAAACCGAGAACCATGATGAATGCACGGCGATTGCGCCATAATCCTTTCAGAGATCCAGCTTCTTTTAAAGCGCGCGTTTCTTGTTGCGAAGTTTCATCTAACTGACGACGTAACCACAACGCCACAACAGCTAACACAGCTCCTAACGCGAAAGGAATACGCCATCCCCACTCTCTGAGTGCAGCGTCTTCCATGGTGTGTTGTAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGATTTTTTGCGACCATGTTTATCGGCTATGCGGCCAAATAGCCAACCGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGTGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCAT > 472 ECDH10B_1907 NA transporter YP_001730746.1 11 MEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVVLAKLVSNGWSNNFLNAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFLLGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAECQLREVEQQIEREKSIRLPPLTSYQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSTLLIIIAVLGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFMVLGVMLLLCALVLSIFGIETRKVSLEEISEVN gamma_subgroup Escherichia_coli_str._K-12_substr._DH10B Escherichia_coli_str._K-12_substr._DH10B NC_010473 1941216..1942574 Durfee,T.,_Nelson,R.,_Baldwin,S.,_Plunkett,G._III,_Burland,V.,_Mau,B.,_Petrosino,J.F.,_Qin,X.,_Muzny,D.M.,_Ayele,M.,_Gibbs,R.A.,_Csorgo,B.,_Posfai,G.,_Weinstock,G.M._and_Blattner,F.R. NA 0:1359 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000948.DH10B_and_DH10B-T1R_are_available_from_Invitrogen_Corporation(http://www.invitrogen.com).COMPLETENESS:_full_length. NA 23-JAN-2012 Escherichia_coli_str._K-12_substr._DH10B_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B1XGN0_ECODH.gb Escherichia_Castellani_and_Chalmers_1919 170079663 J._Bacteriol._190_(7),_2597-2606_(2008) NA NC_010473 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18245285 1359 NA genomic_DNA NA K-12 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 316385 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_complete_genome_sequence_of_Escherichia_coli_DH10B:_insights_into_the_biology_of_a_laboratory_workhorse NA NC_010473.1 TTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTCGATGCCAAAAATGGAGAGAACCAGCGCACAGAGCAATAACATAACACCAAGTACCATAAACACCGTGATCGACCCATAATGTGTTAATAATGCCGCAACGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGCGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAGCAAACATACATGTATAAAAAGAAGATCATCACCAGTCCATAGATTAAAATCGCCCACTCTGTAGTCTGAATTGAATAGATATAGCCTAACACGGCAATAATAATAAGTAAGGTGGAGCCAAATAACCGACGAGGAAAATGATCAATAATTAATGCCGCAATAAATATTCCTACCGGAGCGCCAATCATAATAACAGCGGTCATTAATATTGATTTATCGACATCAATGCCGGAGTTAACAAATATGGTCGGTATCCATACGGTGATGGTATAAAGCGAAATGTTCATTGCAATTAAAACAGTAATCGCGACTAATGTACGTCGTAACATTTCACCTTTAAACAGGAGCCAGAAAGTACCCTTGATTACTTTAACCTTGCTGTTGCTCTGATACGAAGTAAGCGGGGGTAAACGAATACTCTTCTCTCTTTCAATTTGCTGCTCTACTTCACGAAGTTGGCATTCTGCACCTGCGATTTGCCCTTTCCCTGCCAGCCATCGTGGCGACTCGATAAAGTATTTACCTGAGAGAAACCAGGCTAACAGTATGCCAATACCACCCAGCAGAAACATTATTCGCCAACTAAAAAAAGCGATAACCACCACGCCTATCGCCGCAGACAGCATGGGCGACCAGTTACCAACAAATGAGAGCCGCGCGGACCATTTTCCACGCACCGTCGCGGGGATAAACTCCGTAAATGAGGCATAGCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGCTTACCAGCTTTGCTAAGACGACATTACCGGAGTAACTCAAAAACCCTGTTAATAACAGACTAAAGCTTATAATACCAAATATACGATAATGAAACCGGGCCAAAGGCAAGCGGTCCAGTCTTGCGCCAATTTGATCATATTGTTCCAT > 473 ECH7EC4113_5980 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 D-xylose-proton_symporter EDU53179.1 11 MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQTATL gamma_subgroup Escherichia_coli_O157:H7_str._EC4113 Escherichia_coli_O157:H7_str._EC4113 ABHP01000031 24912..26387 Eppinger,M.,_Ravel,J.,_Mammel,M.K.,_LeClerc,J.E.,_Cebula,T.A._and_Sebastian,Y. NA 0:1476 PLEASE_NOTE_THIS_IS_A_WHOLE_GENOME_SHOTGUN_SEQUENCING_PROJECTPERFORMED_AT_JCVI,_AND_USE_OF_THE_SEQUENCE_SHOULD_BE_WITH_THEUNDERSTANDING_THAT_THE_SEQUENCE_IS_NOT_COMPLETE_AND_MAY_CONTAINERRORS.Annotation_was_added_to_the_contigs_in_May_2008. NA 13-MAY-2008 Escherichia_coli_O157:H7_str._EC4113_gcontig_1105762727455,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B2P9K1_ECO57.gb Escherichia_Castellani_and_Chalmers_1919 159530654 Unpublished NA ABHP01000031 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1476 NA genomic_DNA NA EC4113 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 444452 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Annotation_of_Escherichia_coli_O157:H7_str._EC4113 NA ABHP01000031.1 ATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGTGGTTTATTATTTGGCTACGACACCGCCGTTATTTCCGGTACTGTTGAGTCACTCAATACCGTCTTTGTTGCTCCACAAAACTTAAGTGAATCCGCTGCCAACTCCCTGTTAGGGTTTTGCGTGGCCAGCGCTCTGATTGGTTGCATCATCGGCGGTGCCCTCGGTGGTTATTGCAGTAACCGCTTCGGTCGTCGTGATTCACTTAAGATTGCTGCTGTCCTGTTTTTTATTTCTGGTGTAGGTTCTGCCTGGCCAGAACTTGGTTTTACCTCTATAAACCCGGACAACACAGTGCCTGTTTATCTGGCAGGTTATGTCCCGGAATTTGTTATTTATCGTATTATTGGCGGTATTGGCGTTGGTTTAGCCTCAATGCTTTCACCAATGTATATTGCGGAACTTGCTCCTGCTCATATTCGCGGGAAACTGGTTTCATTTAACCAGTTTGCGATTATTTTCGGGCAGCTTTTAGTTTACTGCGTAAACTATTTTATTGCGCGTTCCGGTGATGCCAGCTGGCTGAATACTGACGGCTGGCGTTATATGTTTGCCTCGGAATGTATCCCTGCACTGCTGTTCTTAATGCTGCTGTATACCGTGCCAGAAAGTCCTCGCTGGCTGATGTCACGCGGCAAGCAAGAACAGGCGGAAGGTATCCTGCGCAAAATTATGGGCAACACGCTTGCAACTCAGGCAGTACAGGAAATTAAACACTCCCTGGATCATGGCCGCAAAACCGGTGGTCGTCTGCTGATGTTTGGCGTGGGCGTGATTGTCATCGGCGTTATGCTCTCCATCTTCCAGCAATTTGTCGGCATCAATGTGGTGCTGTACTACGCGCCGGAAGTGTTCAAAACGCTGGGGGCCAGCACGGATATCGCGCTGTTGCAGACCATTATTGTCGGAGTTATCAACCTCACCTTCACCGTTCTGGCAATTATGACGGTGGATAAATTTGGTCGTAAGCCACTGCAAATTATCGGCGCACTCGGAATGGCAATCGGTATGTTTAGCCTCGGTACCGCGTTTTACACTCAGGCACCGGGTATTGTGGCGCTACTGTCGATGCTGTTCTATGTTGCCGCCTTTGCCATGTCCTGGGGTCCGGTATGCTGGGTACTGCTGTCGGAAATCTTCCCGAATGCTATTCGAGGTAAAGCGCTGGCAATCGCGGTGGCGGCCCAGTGGCTGGCGAACTACTTCGTCTCCTGGACCTTCCCGATGATGGACAAAAACTCCTGGCTGGTGGCCCATTTCCACAACGGTTTCTCCTACTGGATTTACGGTTGTATGGGCGTTCTGGCAGCACTGTTTATGTGGAAATTTGTCCCGGAAACCAAAGGTAAAACCCTTGAGGAGCTGGAAGCCCTCTGGGAACCGGAAACGAAGAAAACACAACAAACTGCTACGCTGTAA > 474 ECH7EC4076_4503 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 inner_membrane_metabolite_transport_protein_YdjE EDU69295.1 11 MSYSGNVVLAKLVSNGWSNNFLNAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFLLGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAECQLREVEQQIEREKSIRLPPLTSYQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSTLLIIIAVLGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFMVLGVMLLLCALVLSIFGIETRKVSLEEISEVN gamma_subgroup Escherichia_coli_O157:H7_str._EC4076 Escherichia_coli_O157:H7_str._EC4076 ABHQ01000013 95720..96970 Eppinger,M.,_Ravel,J.,_Mammel,M.K.,_LeClerc,J.E.,_Cebula,T.A._and_Sebastian,Y. NA 0:1251 Annotation_was_added_to_the_contigs_in_May_2008. NA 21-MAY-2008 Escherichia_coli_O157:H7_str._EC4076_gcontig_1105762734329,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B2PNL4_ECO57.gb Escherichia_Castellani_and_Chalmers_1919 159530880 Unpublished NA ABHQ01000013 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1251 NA genomic_DNA NA EC4076 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 444453 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Annotation_of_Escherichia_coli_O157:H7_str._EC4076 NA ABHQ01000013.1 TTAATTTACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTCGATGCCAAAAATGGAGAGAACCAGCGCACAGAGCAATAACATGACACCAAGTACCATAAACACCGTGATCGACCCATAATGTGTTAATAATGCCGCAACGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGCGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAGCAAACATACATGTATAAAAAGAAGATCATCACCAGGCCATAGATTAAAATCGCCCACTCTGTAGTCTGAATTGAATAGATATAGCCTAACACTGCAATAATAATAAGTAAGGTGGAGCCAAATAACCGACGAGGAAAATGATCAATAATTAATGCCGCAATAAATATTCCTACCGGAGCGCCAATCATAATAACAGCGGTCATTAATATTGATTTATCGACATCAATGCCGGAGTTAACAAATATGGTCGGTATCCATACGGTGATGGTATAAAGCGAAATGTTCATTGCAATTAAAACAGTAATCGCGACTAATGTACGTCGTAACATTTCACCTTTAAACAGGAGCCAGAAAGTACCCTTGATTACTTTAACCTTGCTGTTGCTCTGATACGAAGTAAGCGGGGGTAAACGAATACTCTTCTCTCTTTCAATTTGCTGCTCTACTTCACGAAGTTGGCATTCTGCACCTGCGATTTGCCCTTTCCCTGCCAGCCATCGTGGCGACTCAATAAAGTATTTACCTGAGAGAAACCAGGCTAACAGTATGCCAATACCACCCAACAGAAACATTATCCGCCAACTAAAAAAAGCGATAACCACCACACCTATCGCCGCAGACAGCATGGGCGACCAGTTACCAACAAATGAGAGCCGCGCGGACCATTTTCCACGCACCGTCGCGGGGATAAACTCCGTAAATGAGGCATAGCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATAAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAATCACCGATGAACCCACCGGTAAGAGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGCTTACCAGCTTTGCTAAGACGACATTACCGGAGTAACTCAA > 475 ECH7EC4076_1357 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 shikimate_transporter EDU67680.1 11 MDSTLISTRPDERTVSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLGALWVRNGMEESAEFEQQQYNQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALITYFAGNWHSVAIYLLAGCLISAMTALLMKDNQRA gamma_subgroup Escherichia_coli_O157:H7_str._EC4076 Escherichia_coli_O157:H7_str._EC4076 ABHQ01000036 13285..14601 Eppinger,M.,_Ravel,J.,_Mammel,M.K.,_LeClerc,J.E.,_Cebula,T.A._and_Sebastian,Y. NA 0:1317 Annotation_was_added_to_the_contigs_in_May_2008. NA 21-MAY-2008 Escherichia_coli_O157:H7_str._EC4076_gcontig_1105762734213,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B2PT42_ECO57.gb Escherichia_Castellani_and_Chalmers_1919 159530856 Unpublished NA ABHQ01000036 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1317 NA genomic_DNA NA EC4076 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 444453 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Annotation_of_Escherichia_coli_O157:H7_str._EC4076 NA ABHQ01000036.1 ATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAAGGACGGTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGTTTCGCTGGTGCCGTCGTCGACTGGTATGATTTTTTACTCTATGGCATTACCGCCGCACTGGTGTTTAATCGCGAGTTTTTCCCGCAAGTAAGCCCGGCTATGGGAACGCTCGCCGCATTTGCCACCTTTGGCGTCGGATTCCTTTTCCGTCCGCTCGGCGGTGTCATTTTCGGTCACTTTGGCGACCGACTGGGACGTAAGCGCATGTTAATGCTGACCGTCTGGATGATGGGCATCGCGACAGCCTTGATTGGTATTCTTCCTTCATTCTCGACCATTGGGTGGTGGGCACCTATTTTACTGGTGACGCTGCGTGCCATTCAGGGATTTGCCGTCGGCGGCGAATGGGGAGGCGCGGCGTTGCTTTCCGTTGAAAGTGCACCGAAAAATAAAAAAGCCTTTTACAGTAGCGGTGTACAAGTTGGCTACGGTGTAGGTTTACTGCTTTCAACCGGACTGGTTTCATTGATCAGTATGATGACGACTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCGTACTGGTACTGGGAGCATTGTGGGTGCGCAATGGCATGGAAGAGTCCGCGGAATTTGAACAACAGCAATATAATCAAGCGGCCGCGAAAAAACGCATCCCGGTTATCGAAGCGCTGTTACGACATCCCGGTGCTTTCCTGAAGATTATTGCGCTACGACTGTGCGAGTTGCTGACAATGTACATCGTTACCGCCTTTGCACTTAATTATTCAACTCAGAATATGGGGTTACCGCGCGAACTTTTCCTTAATATTGGTTTGCTGGTAGGTGGATTAAGCTGCCTGACAATTCCCTGTTTTGCCTGGCTTGCCGATCGTTTTGGTCGCCGCAGGGTTTATATCACAGGCGCGTTGATCGGAACGTTGAGCGCATTTCCTTTCTTTATGGCGCTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTGCGCATGACATGGTGGTGTGTGTGCAACAACCGATGTTTACCGAAATGTTTGGTGCCAGTTATCGCTATAGTGGTGCTGGAGTCGGTTATCAGGTTGCCAGTGTGGTTGGCGGTGGATTTACACCTTTTATTGCCGCTGCGCTCATCACTTACTTTGCCGGGAACTGGCATAGCGTCGCCATTTATTTGCTGGCTGGATGTCTGATTTCCGCAATGACCGCTTTGTTGATGAAAGACAATCAACGCGCTTGA > 476 ECH7EC4401_5454 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EDU74523.1 11 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYILVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG gamma_subgroup Escherichia_coli_O157:H7_str._EC4401 Escherichia_coli_O157:H7_str._EC4401 ABHR01000019 84066..85397 Eppinger,M.,_Ravel,J.,_Mammel,M.K.,_LeClerc,J.E.,_Cebula,T.A._and_Sebastian,Y. NA 0:1332 Annotation_was_added_to_the_contigs_in_June_2008. NA 04-JUN-2008 Escherichia_coli_O157:H7_str._EC4401_gcontig_1107724393647,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B3AAE1_ECO57.gb Escherichia_Castellani_and_Chalmers_1919 159531125 Unpublished NA ABHR01000019 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1332 NA genomic_DNA NA EC4401 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 478004 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Annotation_of_Escherichia_coli_O157:H7_str._EC4401 NA ABHR01000019.1 ATGCAACCGTCCAGAAACTTTGACGATCTTAAATTTTCCTCTATTCACCGCCGCATTTTGCTGTGGGGAAGCGGTGGTCCGTTTCTGGATGGTTATATACTGGTAATGATTGGCGTGGCGCTGGAGCAACTGACGCCGGCGCTAAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGTTATATTTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTTTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTCATCGGTGCAGACTATCCCATCGCCACTTCGATGATCACTGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCCATGTGGTATGTCGGCGCGACCTGTGCCGATCTGGTCGGCTACTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCGGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTATTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATCAAACTGTTTGGCGAACCGGTGGCTTTCGATGAAGAGCAGCCGCAGCAAACCCGTTTTCGCGATCTGTTTAATCGCCGCCATTTTCCTTTTGTTCTGTTTGTTGCCGCCATCTGGACCTGCCAGGTGATCCCAATGTTCGCCATTTACACCTTTGGCCCGCAAATCGTTGGTTTGTTGGGATTGGGTGTTGGCAAAAACGCGGCACTGGGGAACGTGGTGATTAGCCTGTTCTTTATGCTCGGCTGTATTCCGCCGATGCTGTGGCTAAACACTGCCGGACGGCGTCCATTGTTGATTGGCAGCTTTGCCATGATGACGCTGGCGCTGGCGGTTTTGGGGCTGATCCCGGATATGGGGATCTGGCTGGTAGTGATGGCCTTTGCGGTGTATGCCTTTTTCTCTGGCGGGCCGGGTAATTTGCAGTGGCTCTATCCTAATGAACTCTTCCCGACGGATATCCGCGCCTCTGCCGTGGGCGTGATTATGTCCTTAAGTCGTATTGGCACCATTGTTTCGACCTGGGCACTACCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTGTTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAGACCAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAA > 477 ECH7EC4401_5147 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 shikimate_transporter EDU72745.1 11 MDSTLISTRPDERTVSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLGALWVRNGMEESAEFEQQQYNQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALITYFAGNWHSVAIYLLAGCLISAMTALLMKDNQRA gamma_subgroup Escherichia_coli_O157:H7_str._EC4401 Escherichia_coli_O157:H7_str._EC4401 ABHR01000068 3149..4465 Eppinger,M.,_Ravel,J.,_Mammel,M.K.,_LeClerc,J.E.,_Cebula,T.A._and_Sebastian,Y. NA 0:1317 Annotation_was_added_to_the_contigs_in_June_2008. NA 04-JUN-2008 Escherichia_coli_O157:H7_str._EC4401_gcontig_1107724394243,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B3AFB2_ECO57.gb Escherichia_Castellani_and_Chalmers_1919 159531074 Unpublished NA ABHR01000068 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1317 NA genomic_DNA NA EC4401 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 478004 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Annotation_of_Escherichia_coli_O157:H7_str._EC4401 NA ABHR01000068.1 TCAAGCGCGTTGATTGTCTTTCATCAACAAAGCGGTCATTGCGGAAATCAGACATCCAGCCAGCAAATAAATGGCGACGCTATGCCAGTTCCCGGCAAAGTAAGTGATGAGCGCAGCGGCAATAAAAGGTGTAAATCCACCGCCAACCACACTGGCAACCTGATAACCGACTCCAGCACCACTATAGCGATAACTGGCACCAAACATTTCGGTAAACATCGGTTGTTGCACACACACCACCATGTCATGCGCAATGTTTGCCAGCATTATGGAGAAGAAAACTATCCAGAAAATAGATTGTGCTTCAAGCGCCATAAAGAAAGGAAATGCGCTCAACGTTCCGATCAACGCGCCTGTGATATAAACCCTGCGGCGACCAAAACGATCGGCAAGCCAGGCAAAACAGGGAATTGTCAGGCAGCTTAATCCACCTACCAGCAAACCAATATTAAGGAAAAGTTCGCGCGGTAACCCCATATTCTGAGTTGAATAATTAAGTGCAAAGGCGGTAACGATGTACATTGTCAGCAACTCGCACAGTCGTAGCGCAATAATCTTCAGGAAAGCACCGGGATGTCGTAACAGCGCTTCGATAACCGGGATGCGTTTTTTCGCGGCCGCTTGATTATATTGCTGTTGTTCAAATTCCGCGGACTCTTCCATGCCATTGCGCACCCACAATGCTCCCAGTACCAGTACGATGCTAAACAGGAAAGGAATGCGCCAGCCCCAGCTTAAAAACTGTTCGTCAGTCGTCATCATACTGATCAATGAAACCAGTCCGGTTGAAAGCAGTAAACCTACACCGTAGCCAACTTGTACACCGCTACTGTAAAAGGCTTTTTTATTTTTCGGTGCACTTTCAACGGAAAGCAACGCCGCGCCTCCCCATTCGCCGCCGACGGCAAATCCCTGAATGGCACGCAGCGTCACCAGTAAAATAGGTGCCCACCACCCAATGGTCGAGAATGAAGGAAGAATACCAATCAAGGCTGTCGCGATGCCCATCATCCAGACGGTCAGCATTAACATGCGCTTACGTCCCAGTCGGTCGCCAAAGTGACCGAAAATGACACCGCCGAGCGGACGGAAAAGGAATCCGACGCCAAAGGTGGCAAATGCGGCGAGCGTTCCCATAGCCGGGCTTACTTGCGGGAAAAACTCGCGATTAAACACCAGTGCGGCGGTAATGCCATAGAGTAAAAAATCATACCAGTCGACGACGGCACCAGCGAAACTGCCTAACGCAGCTCGTCGGGCGCGACTTAACGAAACCGTCCTTTCATCGGGACGAGTGGAGATGAGCGTGGAGTCCAT > 478 ECH7EC4501_5097 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 shikimate_transporter EDU83548.1 11 MDSTLISTRPDERTVSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLGALWVRNGMEESAEFEQQQYNQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALITYFAGNWHSVAIYLLAGCLISAMTALLMKDNQRA gamma_subgroup Escherichia_coli_O157:H7_str._EC4501 Escherichia_coli_O157:H7_str._EC4501 ABHT01000065 9460..10776 Eppinger,M.,_Ravel,J.,_Mammel,M.K.,_LeClerc,J.E.,_Cebula,T.A._and_Sebastian,Y. NA 0:1317 Annotation_was_added_to_the_contigs_in_June_2008. NA 04-JUN-2008 Escherichia_coli_O157:H7_str._EC4501_gcontig_1106627446521,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B3B9X4_ECO57.gb Escherichia_Castellani_and_Chalmers_1919 159531564 Unpublished NA ABHT01000065 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1317 NA genomic_DNA NA EC4501 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 478006 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Annotation_of_Escherichia_coli_O157:H7_str._EC4501 NA ABHT01000065.1 ATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAAGGACGGTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGTTTCGCTGGTGCCGTCGTCGACTGGTATGATTTTTTACTCTATGGCATTACCGCCGCACTGGTGTTTAATCGCGAGTTTTTCCCGCAAGTAAGCCCGGCTATGGGAACGCTCGCCGCATTTGCCACCTTTGGCGTCGGATTCCTTTTCCGTCCGCTCGGCGGTGTCATTTTCGGTCACTTTGGCGACCGACTGGGACGTAAGCGCATGTTAATGCTGACCGTCTGGATGATGGGCATCGCGACAGCCTTGATTGGTATTCTTCCTTCATTCTCGACCATTGGGTGGTGGGCACCTATTTTACTGGTGACGCTGCGTGCCATTCAGGGATTTGCCGTCGGCGGCGAATGGGGAGGCGCGGCGTTGCTTTCCGTTGAAAGTGCACCGAAAAATAAAAAAGCCTTTTACAGTAGCGGTGTACAAGTTGGCTACGGTGTAGGTTTACTGCTTTCAACCGGACTGGTTTCATTGATCAGTATGATGACGACTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCGTACTGGTACTGGGAGCATTGTGGGTGCGCAATGGCATGGAAGAGTCCGCGGAATTTGAACAACAGCAATATAATCAAGCGGCCGCGAAAAAACGCATCCCGGTTATCGAAGCGCTGTTACGACATCCCGGTGCTTTCCTGAAGATTATTGCGCTACGACTGTGCGAGTTGCTGACAATGTACATCGTTACCGCCTTTGCACTTAATTATTCAACTCAGAATATGGGGTTACCGCGCGAACTTTTCCTTAATATTGGTTTGCTGGTAGGTGGATTAAGCTGCCTGACAATTCCCTGTTTTGCCTGGCTTGCCGATCGTTTTGGTCGCCGCAGGGTTTATATCACAGGCGCGTTGATCGGAACGTTGAGCGCATTTCCTTTCTTTATGGCGCTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTGCGCATGACATGGTGGTGTGTGTGCAACAACCGATGTTTACCGAAATGTTTGGTGCCAGTTATCGCTATAGTGGTGCTGGAGTCGGTTATCAGGTTGCCAGTGTGGTTGGCGGTGGATTTACACCTTTTATTGCCGCTGCGCTCATCACTTACTTTGCCGGGAACTGGCATAGCGTCGCCATTTATTTGCTGGCTGGATGTCTGATTTCCGCAATGACCGCTTTGTTGATGAAAGACAATCAACGCGCTTGA > 479 ECH7EC869_0880 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00891 MFS_transporter,_sialate:H+_symporter_(SHS)_family EDU92450.1 11 MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLACGFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILYRGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCTAIFISFMVQSTGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNDLVKTKS gamma_subgroup Escherichia_coli_O157:H7_str._EC869 Escherichia_coli_O157:H7_str._EC869 ABHU01000003 414562..416052 Eppinger,M.,_Mammel,M.K.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1491 Annotation_was_added_to_the_contigs_in_June_2008. NA 04-JUN-2008 Escherichia_coli_O157:H7_str._EC869_gcontig_1106613681604,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B3BEJ9_ECO57.gb Escherichia_Castellani_and_Chalmers_1919 159531787 Appl._Environ._Microbiol._77_(9),_2916-2925_(2011) NA ABHU01000003 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21421787 1491 NA genomic_DNA NA EC869 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 478008 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Genome_Signatures_of_Escherichia_coli_O157:H7_Isolates_from_the_Bovine_Host_Reservoir NA ABHU01000003.1 TTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTAAATGGTTTGCCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAGCCAACGCTGAACACGAGAAGGCATATCCAGACCAATCAGCAGGATCACCACAAATGTCAGACTGAACGAGAGCGATGCCAGTGCAGTACCCAGATCCAGACGTTGAGCGATCAACGCGCCGATGATTGGGGCCAGTGCGCCACCCAATGCGCCAACGTTATAGGTAAAGCCCAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTCGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCACCGCCAATAGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAACAGACTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCGACGCAGCACCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCGACAGTATGAGGGTTATAAGCCAGATCGGTTTTCAGATACGTTGGCAGCAGCGCCTGAATCGGCCATGAGTAGAGGAAAGCAAACAACACGACCACCATCAGCATTACGCCAGTTGGCCAGCGTTTGCCCGTACTCTGCACCATAAAGCTGATAAAGATTGCGGTGCATAACAGCCCAAGAACAGCGACGATCGCGGCATTTTGCAGGTTACCGGCGAAGCAGAACCACAGCGCAGTAGCCGCCGCCAGTGTCATTACGATATTGGCAATGCGATGTTCACCACGGTAGAGAATATCCACCATTGTGCGTACTGGTGCTTTACCTGCGTGTTTCTCTTTCCAGTCTTCTGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATTGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCGGAACCACCAGGCTGTAGACCTGAGCGGCAACGACGGCCCCTACAGAGAAGCCTGAAATCAGAAAGCCACTGGCTTTGTTACGCAGATGTTTTGGCCAGCTTTCAATGACATAGGTGGCGCTGGAACCGTATTCACCCGCCATCCCCATGCCGATGACCAGACGAGCGATAAACATGGTGATGTAGCCTGGCGCAAAGCCGCATGCCAGCGTCCCGGCCGAGAAGAGAACGATGCTGGTGACCATTGCCAGACGACGCCCGTAGCGGTCACCCATAGCGCCGAGCATCAGGCCGCCGAACCAGCGAGAGATAAAGGCTGCGGAGATCAGACTTGCCGCCTGCACCGTCGTCAGCCCGAATTCACCTTGTACTTCGGTGAGTACCAGGGCGATTAAAACGAAATCAAAACCGTCAAGCAGATATCCCAACCAGGCAGCGGAAAATGCCCGCCATTGTGCACGATTGAGATGGCGATACCACGGGATATTCTGGGTTGTAGTACTCAT > 480 EcB7A_2689 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_PF08946;_match_to_protein_family_HMM_TIGR00883 proline/betaine_transporter EDV63996.1 11 MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYDNIEQKIDNIDHEIADLQAKRTRLVQQHPRIDE gamma_subgroup Escherichia_coli_B7A Escherichia_coli_B7A AAJT02000005 107040..108542 Rasko,D.A.,_Rosovitz,M.J.,_Brinkley,C.,_Myers,G.S.A.,_Seshadri,R.,_Cer,R.Z.,_Jiang,L._and_Ravel,J. NA 0:1503 Escherichia_coli_B7A_is_a_standard_enterotoxigenic_E._coli_(ETEC)isolate_that_was_obtained_from_Maj._Carl_Brinkley_(Walter_Reed_ArmyInstitute_of_Research)._ETEC_is_the_leading_cause_of_travelersdiarrhea,_which_is_chiefly_characterized_by_a_large_volume_ofwatery_diarrhea._ETEC_primarily_colonizes_the_small_intestine_byway_of_the_pili._Additionally,_two_toxins_are_thought_to_beresponsible_for_the_virulence:_heat-stable_and_heat-labileenterotoxins._The_stock_used_for_genomic_DNA_preparation_wasobtained_from_a_master-_and_production_cGMP_cell_bank_available_atWRAIR/NMRC._Pathogenicity_has_been_confirmed_in_human_challengeexperiments._Other_known_virulence_factors_include:_serotypeO148:H28,_heat-stable_toxin_and_heat-labile_toxin,_and_CFA_typeCS6._Additionally,_this_isolate_contains_multiple_plasmids. NA 20-JUN-2008 Escherichia_coli_B7A_gcontig_1112495757598,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B3H9P0_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 190904276 Submitted_(01-SEP-2005)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20874,_USA NA AAJT02000005 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1503 NA genomic_DNA NA B7A NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 340184 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA AAJT02000005.1 TTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGCAATCTCGTGGTCAATATTATCGATTTTCTGCTCGATATTATCGTAATGCTCGACGAGAATTTCCTTCGCTTCCTGTATATCTGACGCCGCCGGTGTCGCACCTTTCAACGGACGATTTGCCGTCTCTTTCATGGTTACGCCGGTGATTAAACCAATCACCGCCACTACCATCAGGTAATAGGCAGGCATCATCAGATTCTGCGAGCTTTCGACCAGCCAGGCCGCCAGTGTTGGCGTCAGACCGGCAACCAGCACCGAAATATTAAATGCCGCCGCCAGCGCGCTGTAACGGATATGCGTCGGGAACATCGCTGGCAAGGTAGAAGCCATAACGCCCGTAAAGCAGTTAAGGATCACCGCCAGCATCAGTAACCCGGCAAAAATCAGGCCGATGACGTTACTGTTAATCAGAATAAACGCCGGGATCGCCAACACAAACAGGGCAACACTACCAAGTAGCACAAACGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAATGGCGATAATAATCAGCACCCCGTGGTCTTCGGAGTAATGCAGGTTATGCGACAAATAACTCGGCATATAGGTCAGCAACATGTAGTAAGTCACGTTGGTGGCAATTACCAGACCAATACATGTCAACAGGCTGCGCCAGTGTTTGGTGGCAATCTCTTTAAACGAGACTTTCGGGCCATCCTGCAAACCTTCGCGGTCGCCCTGTTCCAGTTTATCGACATGCTGCTGGAACGCTGGGGTCTCTTCCAGCGCATGGCGCAGGTAAAGCCCGATAATCCCTAACGGCAGAGCAATAAAGAACGGAATACGCCAGCCCCAGTCGAGGAAGTTCGCTTCGCCGACAATGGTCGAAATTAACACCACTACGCCAGCACCCAGCACAAACCCGGCAATAGAACCAAAGTCCAGCCAGCTGCCCATAAAGCCACGTTTACGGTCAGGGGAGTATTCCGCAACAAATATCGACGCCCCGGTATATTCACCGCCGACCGAGAAACCTTGTGCCATCTTACAGATCAACAGCAGAATCGGTGCCCAAATACCAATCGTGTCGTAGGACGGTATTAAGCCAATACAGAACGTACTGATCGACATAATCACAATAGTGATAGCGAGGATCTTCTGGCGACCATATTTATCGCCCAACATACCAAAGAAGAGTCCGCCAAGCGGTCGAATCAGAAAGGGAACGGAGAACGTGGCAAGTGCAGCAACCATCTGCACGCTGGGGTCAGCCCCCGGGAAAAAAACTTTACCTAATGCGTAAGCAACAAAACCATAAACACCAAAATCAAACCATTCCATTGCATTACCCAGTGATGCTGCGGTAATGGCTTTACGCAGTTTACCGTCATCAATAATGGTGACATCACGAAGGGTAATCGGTTTTACTTTTTTCCTTTTCAGCAT > 481 EcF11_0219 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EDV65218.1 11 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG gamma_subgroup Escherichia_coli_F11 Escherichia_coli_F11 AAJU02000041 9256..10587 Rasko,D.A.,_Rosovitz,M.J.,_Mobley,H.L.T.,_Myers,G.S.A.,_Seshadri,R.,_Cer,R.Z.,_Jiang,L._and_Ravel,J. NA 0:1332 Escherichia_coli_F11_was_originally_isolated_from_a_20_year_oldwoman_presenting_her_first_case_of_cystitis_with_bacteruria_(10e5fcu/ml)_(Stapleton_AE_et_al,_J,_Infect._Dis._(1991),163:773-779).Cystitis_is_the_infection_of_the_bladder_with_no_involvement_of_thekidneys_or_other_internal_organs._Common_causes_of_cystitis_includeE._coli_and_Proteus_mirabilis._The_E._coli_F11_strain_was_providedfor_sequencing_by_Dr._H.L.T._Mobley_(University_of_Michigan,Department_of_Microbiology)._E._coli_F11_is_a_member_of_theextra-intestinal_pathogenic_E._coli_(ExPEC),_which_include_E._coliinfections_in_the_kidneys_and_cerebral_spinal_fluid._Knownvirulence_factors_include:_serotype_O6:H31,_mannose-resistanthemagglutinins_(MRHA/S,_MRHA/H),_hemolysin_(phenotype_and_colonyblot_positive),_production_of_aerobactin,_pap-pili,_and_a_papG_IIIallele._E._coli_F11_has_been_shown_to_colonize_the_urinary_tractsof_a_number_of_mouse_models_(Johnson_D_et_al,_Infection_andImmunity_(1998),_66:_3059). NA 20-JUN-2008 Escherichia_coli_F11_gcontig_1112495917830,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B3HXU0_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 190905590 Submitted_(01-SEP-2005)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockvillw,_MD_20850,_USA NA AAJU02000041 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1332 NA genomic_DNA NA F11 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 340197 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA AAJU02000041.1 TTACCCCATTCTCTGCCCGCGGATCGTCATATTGCTGGTCTGCGCCAGTGACATCCCTCGAGTCTCCGGGGCAAACGCTACGGAAATCAACAAGCCAAATAGCGAGATACCCGCCCCCATTAGCATCGTGTTACTGATACCGTAATTATTGATAAAGATCGGCAGTGCCCAGGTCGATACAATAGTGCCAATACGGCTTAAGGACATAATCACGCCCACGGCAGAGGCGCGGATATCCGTCGGGAAGAGTTCATTAGGATAAAGCCACTGCAAATTACCCGGCCCACCGGAGAAAAAGGCATACACCGCAAACGCCATTACCACCAGCCAGATCCCCATATCCGGGATCAGCCCCAAAACCGCCAGCGCCAGCGTCATCATGGCAAAGCTGCCAATCAACAATGGACGCCGTCCGGCAGTGTTTAGCCACAGCATCGGCGGAATACAGCCGAGCATAAAGAACAGGCTAATCACCACGTTCCCCAGCGCCGCGTTTTTGCCAACCCCCAATCCCAACAAACCAACGATTTGCGGGCCAAAGGTGTAAATGGCGAACATTGGGATCACCTGGCAGGTCCAGATGGCGGCAACAAACAGAACAAAAGGAAAATGGCGGCGATTAAACAGATCGCGAAAACGGGTTTGCTGCGGCTGCTCTTCATCGAAAGCCACCGGTTCGCCAAACAGTTTGATCATCATCTCTTCGCACTCTTTTACTCGCCCTTTGCGTAACAACCAGCGGGGAGATTCAGGCAGTTCGAATCGACCAATCAAAATCAACAAACAGGGGATCGCTGCGCTACCCAGCATCCAGCGCCAACCACCTTCCACATCATAAAGCCAGTAACCGACCAGATCGGCGCAGGTCGCGCCGACATACCACATCGCGGCAATAAAGCTGATGGAAAACGCCCGCTGACGGGTACTGGAGAACTCAGTGATCATCGAAGTGGCGATGGGATAATCTGCACCGATGACAATGCCGATGAGTACCCGCATCACTAACAGTTCGACGGGGGATGAGACAAACATCGTCGCCACCGATATCACGCCGATGGCGATGATATCGATGAGGAACATTTTGCGCCGTCCGACTTTATCGGAGATATAGCCAAACAGCGATGTGCCAACGAACAGCCCGGCGAGCGTTCCCGCGCCCAGCAAGCCAATCCAGTCAGCGTCCAGTTTCAGCGCCGGAGTCAGTTGCTCCAGCGCCACGCCAATCATTACCAGTACATAACCATCCAGAAACGGACCACCGCTTCCCCACAGCAAAATGCGGCGGTGAATAGAGGAGAATTTAAGATCATCAAAGTTTCTGGACGGTTGCAT > 482 EcF11_4071 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00891 MFS_transporter,_sialate:H+_symporter_(SHS)_family EDV64939.1 11 MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLACGFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHGGKAPVRTMVDILYRGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNNLVKTKS gamma_subgroup Escherichia_coli_F11 Escherichia_coli_F11 AAJU02000052 4368..5858 Rasko,D.A.,_Rosovitz,M.J.,_Mobley,H.L.T.,_Myers,G.S.A.,_Seshadri,R.,_Cer,R.Z.,_Jiang,L._and_Ravel,J. NA 0:1491 Escherichia_coli_F11_was_originally_isolated_from_a_20_year_oldwoman_presenting_her_first_case_of_cystitis_with_bacteruria_(10e5fcu/ml)_(Stapleton_AE_et_al,_J,_Infect._Dis._(1991),163:773-779).Cystitis_is_the_infection_of_the_bladder_with_no_involvement_of_thekidneys_or_other_internal_organs._Common_causes_of_cystitis_includeE._coli_and_Proteus_mirabilis._The_E._coli_F11_strain_was_providedfor_sequencing_by_Dr._H.L.T._Mobley_(University_of_Michigan,Department_of_Microbiology)._E._coli_F11_is_a_member_of_theextra-intestinal_pathogenic_E._coli_(ExPEC),_which_include_E._coliinfections_in_the_kidneys_and_cerebral_spinal_fluid._Knownvirulence_factors_include:_serotype_O6:H31,_mannose-resistanthemagglutinins_(MRHA/S,_MRHA/H),_hemolysin_(phenotype_and_colonyblot_positive),_production_of_aerobactin,_pap-pili,_and_a_papG_IIIallele._E._coli_F11_has_been_shown_to_colonize_the_urinary_tractsof_a_number_of_mouse_models_(Johnson_D_et_al,_Infection_andImmunity_(1998),_66:_3059). NA 20-JUN-2008 Escherichia_coli_F11_gcontig_1112495916290,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B3HYN5_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 190905297 Submitted_(01-SEP-2005)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockvillw,_MD_20850,_USA NA AAJU02000052 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1491 NA genomic_DNA NA F11 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 340197 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA AAJU02000052.1 ATGAGTACTACAACCCAGAATATCCCGTGGTATCGCCATCTTAACCGCGCACAATGGCGGGCATTTTCCGCTGCCTGGTTGGGATATCTGCTTGACGGTTTTGATTTCGTTTTAATCGCCCTGGTACTCACCGAAGTACAGGGTGAATTCGGGCTGACGACGGTGCAGGCGGCAAGTCTGATCTCCGCAGCCTTTATCTCTCGCTGGTTCGGCGGCCTGATGCTCGGCGCTATGGGTGACCGCTACGGGCGTCGTCTGGCAATGGTCACCAGCATCGTTCTCTTCTCGGCCGGGACGCTGGCCTGCGGCTTTGCGCCAGGCTACATCACCATGTTTATCGCTCGTCTGGTCATCGGCATGGGGATGGCGGGTGAATACGGTTCCAGCGCCACCTATGTCATTGAAAGCTGGCCAAAGCATCTGCGTAACAAAGCCAGTGGTTTTCTGATTTCAGGCTTCTCAGTGGGGGCCGTCGTTGCCGCTCAGGTCTATAGTCTGGTGGTTCCGGTCTGGGGCTGGCGTGCGCTGTTCTTTATCGGCATTTTGCCAATCATCTTTGCTCTCTGGCTGCGTAAAAACATCCCGGAAGCGGAAGACTGGAAAGAGAAACACGGGGGTAAAGCACCAGTACGCACGATGGTAGACATTCTCTACCGTGGTGAACATCGCATTGCCAATATCGTAATGACACTGGCGGCGGCTACTGCGCTGTGGTTCTGCTTCGCCGGTAACCTGCAAAATGCCGCGATCGTCGCTGTTCTTGGGCTGTTATGCGCCGCAATTTTTATCAGCTTTATGGTGCAGAGTACGGGCAAACGCTGGCCAACGGGCGTAATGCTGATGGTGGTCGTGTTGTTTGCTTTCCTCTACTCATGGCCGATTCAGGCGCTGCTGCCAACGTATCTGAAAACCGATCTGGCTTATGACCCGCATACTGTCGCCAATGTGCTGTTCTTTAGTGGCTTTGGCGCGGCGGTGGGGTGCTGCGTCGGGGGCTTCCTCGGTGACTGGCTGGGAACCCGCAAAGCGTACGTTTGTAGTCTGCTGGCCTCGCAGCTGCTGATTATTCCGGTATTTGCGATTGGCGGCGCAAACGTCTGGGTGCTCGGTCTGTTACTGTTCTTCCAGCAAATGCTTGGACAAGGGATCGCCGGGATCTTACCGAAACTGATTGGCGGTTATTTCGATACCGACCAGCGTGCAGCGGGCCTGGGCTTTACCTACAACGTTGGCGCACTGGGCGGTGCACTGGCCCCAATCATCGGCGCGTTGATCGCTCAACGTCTGGATCTGGGTACTGCGCTGGCATCGCTCTCGTTCAGTCTGACATTTGTGGTGATCCTGCTGATTGGTCTGGATATGCCTTCTCGTGTTCAGCGTTGGCTGCGCCCGGAAGCATTGCGTACTCATGACGCTATCGACGGCAAACCATTTAGCGGTGCCGTGCCATTTGGCAGCGCCAAAAACAATTTAGTCAAAACCAAAAGTTAA > 483 EcE22_1819 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 MFS_transporter,_metabolite:H+_symporter_(MHS)_family_protein EDV85139.1 11 MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATAAVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLLTMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRALYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVSLHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFSTAAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIILFALFAFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVASILGASVAPYIAAWLQANYGLGAVGLYLAAMAGLTLIALLLTHETRHQSL gamma_subgroup Escherichia_coli_E22 Escherichia_coli_E22 AAJV02000001 92754..94076 Rasko,D.A.,_Rosovitz,M.J.,_Kaper,J.B.,_Boedecker,E.C.,_Myers,G.S.A.,_Seshadri,R.,_Cer,R.Z.,_Jiang,L._and_Ravel,J. NA 0:1323 Escherichia_coli_E22_is_a_strain_of_enteropathogenic_E._coli_(EPEC)that_has_been_used_in_the_development_of_the_model_system_ofinfection_in_rabbits._EPEC_infection_is_primarily_in_infants_andusually_limited_to_the_small_intestine,_but_in_some_cases_causeshemolytic_uremic_syndrome_(HUS)_or_hemorrhagic_colitis_(HC)._E.coli_E22_was_provided_by_Drs._James_B._Kaper_and_Edward_Boedeker(University_of_Maryland_School_of_Medicine)._Known_virulencefactors_include:_serotype_O103:H2,_LEE_pathogenicity_island_(TypeII_secretion_system_with_secreted_factors_leading_to_the_typical_AElesions_of_the_epithelial_layer). NA 25-JUN-2008 Escherichia_coli_E22_gcontig_1112495653268,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B3HZW8_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 192932434 Submitted_(01-SEP-2005)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA AAJV02000001 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1323 NA genomic_DNA NA E22 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 340185 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA AAJV02000001.1 TTACAACGACTGATGTCGCGTCTCATGGGTCAGCAGCAGGGCGATTAACGTCAAGCCAGCCATCGCCGCCAGATATAACCCCACCGCACCTAACCCGTAGTTAGCCTGCAACCAGGCTGCGATATATGGTGCAACGGAAGCCCCGAGAATCGACGCTACGTTGTAAGAGAACGATGCTCCGGTGTAACGCACTTCTGTTGGGAACAGCTCTGGTAACAGCGCGCCCATCGGCCCGAAGGTCAGCCCCATCAGACTTAACCCCAGCAGCAGGAAGGCAAAAACCAGAATCGGGTTGCCAGAACCAAGCAGCGGGTTAAAGGCGAACAGCGCGAACAGGATGATCAGCGTGGTGATAATTACCATACTTTTACGGCGACCAAAGGCATCTGCCAGTAATCCGGCGACTGGCACCATCACGCCAAAACCAATAACTGCCATCATCAGCATCCACAACACTTCGTTACGCGGCAGGCCAAGCCCAACTGGCGCGGCGGCGGTACTAAAGGTCATAGAGTAGACCGTCATGATGTAAAACAGCGTATAGGTTGCCAGCATAATGAACGTACCCAGTACGGTTACGCGAACATGTTTGGTCAGCAGCGTACCCAGCGGGATCTTCACCTGTTTTTTCGCTTTAGCGACTTTCTCAAACACCGGCGACTCATGCAGCGACACGCGAACATACAGGCCGATAATGACCAGCACCGCCGAGAAGATAAATGGCACACGCCAGCCCCAGCTCATAAACTGCTCGTCGGTCAGTAGCCAGGAAAGCAGCAAGAAAGTGCCGTTGGCAAAGAAGAAGCCAATCGGTGCGCCCAGCTGTGGGAAGGAGCCATACAGTGCACGTTTGCGCGGTGGGGCGTTTTCAGTCGCCAGCAGCGCCGCGCCGCCCCATTCACCGCCTAAGCCCAGACCCTGACCAAATCGAGCCAGCGCCAGCAGCAGCGGGGCGAAAATACCAATCGTGGCATAGCCCGGCAGCAGACCAATCACCACGGTCGAAATCCCCATCGTTAGCAACGAGGCGACCAGCGTCGCTTTACGCCCAACGCGATCGCCAAAATGACCAAAAACGGCAGAGCCAATGGGGCGCGCGACGAAGGCGATGGCGAAGGTGGCGAGCGACTGTAGCGTTGCTGCCGTTGGATCGCCCTGCGGGAAGAAGATATGCGGAAACACAATAACGGCCGCAGTGGCGTAAATGTAAAAGTCGAAGAACTCAATGGCCGTGCCAATGAGAGAGGCGACAAGGACTTTATTACGCGAGTTGATCGGCGTGTATTCTTGCTCGTGGTCGAGTGTTGTGGCTGTTGCTTGCAT > 484 EcE22_3716 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 shikimate_transporter EDV80358.1 11 MDSTLISTRPDEGTLSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLGALWVRNGMEESAEFEQQQHYQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALITYFAGNWHSVAIYLLAGCLISAMTALLMKDNQRA gamma_subgroup Escherichia_coli_E22 Escherichia_coli_E22 AAJV02000065 8638..9954 Rasko,D.A.,_Rosovitz,M.J.,_Kaper,J.B.,_Boedecker,E.C.,_Myers,G.S.A.,_Seshadri,R.,_Cer,R.Z.,_Jiang,L._and_Ravel,J. NA 0:1317 Escherichia_coli_E22_is_a_strain_of_enteropathogenic_E._coli_(EPEC)that_has_been_used_in_the_development_of_the_model_system_ofinfection_in_rabbits._EPEC_infection_is_primarily_in_infants_andusually_limited_to_the_small_intestine,_but_in_some_cases_causeshemolytic_uremic_syndrome_(HUS)_or_hemorrhagic_colitis_(HC)._E.coli_E22_was_provided_by_Drs._James_B._Kaper_and_Edward_Boedeker(University_of_Maryland_School_of_Medicine)._Known_virulencefactors_include:_serotype_O103:H2,_LEE_pathogenicity_island_(TypeII_secretion_system_with_secreted_factors_leading_to_the_typical_AElesions_of_the_epithelial_layer). NA 25-JUN-2008 Escherichia_coli_E22_gcontig_1112495653276,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B3IDI5_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 192925695 Submitted_(01-SEP-2005)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA AAJV02000065 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1317 NA genomic_DNA NA E22 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 340185 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA AAJV02000065.1 ATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTGGTGCCGTCGTCGACTGGTATGATTTTTTACTCTATGGCATCACCGCCGCACTGGTGTTTAATCGCGAGTTTTTCCCGCAAGTAAGCCCGGCGATGGGAACGCTCGCCGCATTTGCTACCTTTGGCGTCGGATTCCTTTTCCGTCCGCTCGGCGGTGTCATTTTCGGTCACTTTGGCGACCGACTGGGACGTAAGCGCATGTTAATGCTGACCGTCTGGATGATGGGCATCGCGACAGCCTTGATTGGTATTCTTCCTTCATTCTCGACCATTGGGTGGTGGGCACCTATTTTACTGGTGACGCTGCGTGCCATTCAGGGATTTGCCGTCGGCGGCGAATGGGGAGGCGCGGCGTTGCTTTCCGTTGAAAGTGCACCAAAAAATAAAAAAGCCTTTTACAGTAGCGGTGTACAAGTTGGCTACGGTGTAGGTTTACTGCTTTCAACCGGACTGGTTTCATTGATCAGTATGATGACGACTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCGTACTGGTACTGGGAGCATTGTGGGTGCGCAATGGCATGGAGGAGTCCGCGGAATTTGAACAACAGCAACATTATCAAGCTGCCGCGAAAAAACGCATCCCGGTTATCGAAGCGCTGTTACGACATCCCGGTGCTTTCCTGAAGATTATTGCGCTACGACTGTGCGAATTGCTGACGATGTACATCGTTACTGCCTTTGCACTTAATTATTCAACCCAGAATATGGGGTTACCGCGCGAACTTTTCCTCAATATTGGTTTGCTGGTAGGTGGATTAAGCTGCTTGACAATTCCCTGTTTTGCCTGGCTTGCCGATCGTTTTGGTCGCCGCAGGGTTTATATCACAGGTGCGTTAATCGGAACGTTGAGCGCATTTCCTTTCTTTATGGCGCTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTGCGCATGACATGGTGGTGTGTGTGCAACAACCGATGTTTACCGAAATGTTTGGTGCCAGTTATCGCTATAGTGGTGCTGGAGTCGGTTATCAGGTCGCCAGTGTGGTTGGCGGTGGATTTACACCTTTTATTGCCGCTGCACTCATCACTTACTTTGCCGGGAACTGGCATAGCGTCGCCATTTATTTGCTGGCTGGATGTCTGATTTCCGCAATGACCGCTTTGTTGATGAAAGACAATCAACGCGCTTGA > 485 EC1011_3466 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_PF08946;_match_to_protein_family_HMM_TIGR00883 proline/betaine_transporter EDX39821.1 11 MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKYWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVVGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYDNIEQKIDDIDHEIADLQAKRTRLVQQHPRIDE gamma_subgroup Escherichia_coli_101-1 Escherichia_coli_101-1 AAMK02000006 148288..149790 Rasko,D.A.,_Rosovitz,M.J.,_Nataro,J.P.,_Myers,G.S.A.,_Sheshadri,R.,_Cer,R.Z.,_Jiang,L._and_Ravel,J. NA 0:1503 Escherichia_coli_101-1_is_a_member_of_the_enteroaggregative_E._coli(EAEC)_group_of_pathogens._Enteroaggregative_E._coli_is_anemerging_diarrheal_pathogen,_implicated_in_travelers_diarrhea_andendemic_diarrhea_in_developing_and_industrialized_countries._Thepathogenesis_of_EAEC_infection_comprises_colonization_of_theintestinal_mucosa_with_elaboration_of_enterotoxins_and_cytotoxins.E._coli_101-1_was_provided_by_Dr._James_Nataro_(The_University_ofMaryland_School_of_Medicine)_and_isolated_from_an_outbreak_inJapan._It_is_an_atypical_EAEC_isolate._E._coli_101-1_does_notcontain_any_of_the_previously_identified_EAEC_virulence_factors;however,_it_causes_a_disease_that_is_similar_to_that_caused_byother_EAEC_isolates. NA 09-FEB-2010 Escherichia_coli_101-1_gcontig_1112603665869,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B3XCM9_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 194423714 Submitted_(07-DEC-2005)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA AAMK02000006 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1503 NA genomic_DNA NA 101-1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 358709 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA AAMK02000006.1 ATGCTGAAAAGGAAAAAAGTAAAACCCATTACCCTTCGTGATGTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTTGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGGGGCTGACCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGGCTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCACTATTGTGATTATGTCGATCAGTACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTGAATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGCTTTATGGGCAGCTGGCTGGACTTCGGTTCTATTGCCGGGTTTGTGCTGGGTGCGGGCGTGGTGGTGTTAATTTCGACCATTGTCGGCGAAGCGAACTTCCTCGACTGGGGCTGGCGTATTCCGTTCTTTATTGCTCTGCCGTTAGGGATTATCGGGCTTTACCTGCGCCATGCGCTGGAAGAAACTCCGGCGTTTCAGCAGCATGTTGATAAACTGGAACAGGGCGACCGCGAAGGTTTGCAGGATGGCCCGAAAGTCTCGTTTAAAGAGATTGCCACTAAATACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTTATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCACGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCTGTTTGTGTTGGCGATCCCGGCGTTTATTCTGATTAACAGTAACGTCATCGGTCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTACGGGCGTTATGGCTTCTACCTTGCCAGCGATGTTCCCGACGCATATCCGATACAGCGCGCTGGCGGCGGCATTTAATATTTCGGTGCTGGTTGCCGGTCTGACGCCAACGCTGGCGGCCTGGCTGGTCGAAAGCTCGCAGAATCTGATGATGCCTGCCTATTACCTGATGGTAGTGGCGGTGGTTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAA > 486 ECH74115_5624 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_PF08946;_match_to_protein_family_HMM_TIGR00883 proline/glycine_betaine_transporter YP_002273655.1 11 MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKYWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVVGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYDNIEQKIDDIDHEIADLQAKRTRLVQQHPRIDE gamma_subgroup Escherichia_coli_O157:H7_str._EC4115 Escherichia_coli_O157:H7_str._EC4115 NC_011353 5260151..5261653 Eppinger,M.,_Mammel,M.K.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1503 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001164.COMPLETENESS:_full_length. NA 26-JAN-2012 Escherichia_coli_O157:H7_str._EC4115_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B5Z2B9_ECO5E.gb Escherichia_Castellani_and_Chalmers_1919 209395693 Proc._Natl._Acad._Sci._U.S.A._108_(50),_20142-20147_(2011) NA NC_011353 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 22135463 1503 NA genomic_DNA NA EC4115 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 444450 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Genomic_anatomy_of_Escherichia_coli_O157:H7_outbreaks NA NC_011353.1 ATGCTGAAAAGGAAAAAAGTAAAACCGATTACCCTTCGTGATGTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTTGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGGGGCTGACCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCACTATTGTGATTATGTCGATCAGTACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTGAATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGCTTTATGGGCAGCTGGCTGGACTTCGGTTCTATTGCCGGGTTTGTGCTGGGTGCGGGCGTGGTGGTGTTAATTTCGACCATTGTCGGCGAAGCGAACTTCCTCGACTGGGGCTGGCGTATTCCGTTCTTTATTGCTCTGCCGTTAGGGATTATCGGGCTTTACCTGCGCCATGCGCTGGAAGAAACTCCGGCGTTCCAGCAGCATGTTGATAAACTGGAACAGGGCGACCGCGAAGGTTTGCAGGATGGCCCGAAAGTCTCGTTTAAAGAGATTGCCACTAAATACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCACGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCACTGTTTGTGTTGGCGATCCCGGCGTTTATTCTGATTAACAGTAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTACGGGCGTTATGGCTTCTACCTTGCCAGCGATGTTCCCGACGCATATCCGTTACAGCGCGCTGGCGGCGGCATTTAATATTTCGGTGCTGGTTGCCGGTCTGACGCCAACACTGGCGGCCTGGCTGGTCGAAAGCTCGCAGAATCTGATGATGCCAGCCTATTACCTGATGGTAGTGGCGGTGGTTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCAACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAA > 487 ECSE_1940 NA putative_transport_protein YP_002293215.1 11 MEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVVLAKLVSNGWSNNFLNAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFLLGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAESQLREVEQQIEREKSIRLPQLTLNQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSALLIIIAVLGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFMVLGVMLVLCALVLSIFGIETRKVSLEEISEVN gamma_subgroup Escherichia_coli_SE11 Escherichia_coli_SE11 NC_011415 2021720..2023078 Oshima,K.,_Toh,H.,_Ogura,Y.,_Sasamoto,H.,_Morita,H.,_Park,S.H.,_Ooka,T.,_Iyoda,S.,_Taylor,T.D.,_Hayashi,T.,_Itoh,K._and_Hattori,M. NA 0:1359 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AP009240.This_work_was_done_in_collaboration_with_Yoshitoshi_Ogura,_TadasukeOoka,_and_Tetsuya_Hayashi_(University_of_Miyazaki),_Sang-Hee_Parkand_Kikuji_Itoh_(University_of_Tokyo),_and_Hidetoshi_Morita_(AzabuUniversity).COMPLETENESS:_full_length. NA 07-APR-2011 Escherichia_coli_SE11_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B6IBJ0_ECOSE.gb Escherichia_Castellani_and_Chalmers_1919 209917191 DNA_Res._15_(6),_375-386_(2008) NA NC_011415 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18931093 1359 NA genomic_DNA NA SE11 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 409438 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Complete_genome_sequence_and_comparative_analysis_of_the_wild-type_commensal_Escherichia_coli_strain_SE11_isolated_from_a_healthy_adult NA NC_011415.1 TTAATTCACCTCAGAAATCTCTTCCAGCGACACCTTCCGCGTTTCGATGCCAAAAATGGAGAGAACCAGCGCACAGAGCACTAACATGACACCAAGCACCATAAACACCGTGATCGACCCATAATGTGTTAATAATGCCGCAACGCCATAGGGCGTGAAAACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGCGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCTGACGCGAAGCAAACATACATGTATAAAAAGAAGATCATCACCAGACCATAGATTAAAATCGCCCACTCTGTAGTCTGAATTGAATAGATATAGCCTAACACGGCAATAATAATAAGTAAGGCGGAGCCAAATAATCGACGAGGAAAATGATCAATAATTAATGCCGCAATAAATATTCCTACCGGAGCACCAATCATAATAACAGCGGTCATTAATATTGATTTATCGACATCAATCCCGGAGTTAACAAATATGGTCGGTATCCATACGGTAATGGTATAAAGCGAAATGTTCATTGCAATTAAAACAGTTATCGCAACTAATGTACGTCGTAACATTTCCCCTTTAAACAGGAGCCAGAAGGTACCCTTGATTACCTTAACCTTGCTGTTGCTCTGGTTCAAAGTAAGCTGGGGTAAACGAATACTCTTCTCCCTTTCAATTTGCTGCTCTACTTCACGAAGTTGGCTTTCTGCACCGGCGATTTGCCCTTTCCCTGCCAGCCATCGTGGCGACTCGATAAAGTATTTACCTGAGAGAAACCAGGCTAACAGTATGCCAATACCACCCAGAAGAAACATTATTCGCCAACTAAAAAAAGCGATAACCACCACGCCTATCGCCGCAGACAGCATGGGCGACCAGTTACCAACAAATGAGAGCCGCGCGGACCATTTTCCACGCACCGTCGCGGGGATAAACTCCGTAAATGAGGCATAGCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAAATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGCTTACCAGCTTTGCTAAGACGACATTACCTGAGTAACTCAAAAACCCCGTTAATAACAGACTAAAGCTTATTATACCAAATATACGATAATGAAACCGGGCCAAAGGCAAGCGGTCCAGTCTTGCGCCAATTTGATCATATTGTTCCAT > 488 ESCCO14588_1351 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EEC30036.1 11 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYILVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG gamma_subgroup Escherichia_coli_O157:H7_str._TW14588 Escherichia_coli_O157:H7_str._TW14588 ABKY02000001 1248500..1249831 Sutton,G._and_Whittam,T.S. NA 0:1332 DNA_Source:_STEC_CenterNational_Food_Safety_and_Toxicology_Center_(NFSTC)Michigan_State_University_(MSU)http://foodsafe.msu.edu/. NA 11-DEC-2008 Escherichia_coli_O157:H7_str._TW14588_gcontig_1117790713610,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B6ZSH5_ECO57.gb Escherichia_Castellani_and_Chalmers_1919 217320342 Submitted_(26-FEB-2008)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ABKY02000001 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1332 NA genomic_DNA NA TW14588 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 502346 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ABKY02000001.1 TTACCCCATTCTCTGCCCGCGGATCGTCATATTGCTGGTCTGCGCCAGTGACATCCCTCGAGTCTCCGGGGCAAACGCTACGGAAATCAACAAGCCAAACAGCGAGATACCCGCCCCCATTAGCATCGTGTTACTGATACCGTAATTATTGATAAAGATCGGTAGTGCCCAGGTCGAAACAATGGTGCCAATACGACTTAAGGACATAATCACGCCCACGGCAGAGGCGCGGATATCCGTCGGGAAGAGTTCATTAGGATAGAGCCACTGCAAATTACCCGGCCCGCCAGAGAAAAAGGCATACACCGCAAAGGCCATCACTACCAGCCAGATCCCCATATCCGGGATCAGCCCCAAAACCGCCAGCGCCAGCGTCATCATGGCAAAGCTGCCAATCAACAATGGACGCCGTCCGGCAGTGTTTAGCCACAGCATCGGCGGAATACAGCCGAGCATAAAGAACAGGCTAATCACCACGTTCCCCAGTGCCGCGTTTTTGCCAACACCCAATCCCAACAAACCAACGATTTGCGGGCCAAAGGTGTAAATGGCGAACATTGGGATCACCTGGCAGGTCCAGATGGCGGCAACAAACAGAACAAAAGGAAAATGGCGGCGATTAAACAGATCGCGAAAACGGGTTTGCTGCGGCTGCTCTTCATCGAAAGCCACCGGTTCGCCAAACAGTTTGATCATCATCTCTTCGCACTCTTTTACTCGCCCTTTGCGTAATAACCAGCGGGGAGATTCAGGCAGTTCGAATCGACCAATCAAAATCAACAAACAGGGGATCGCCGCGCTACCCAGCATCCAGCGCCAGCCGCCTTCCACATCATAAAGCCAGTAGCCGACCAGATCGGCACAGGTCGCGCCGACATACCACATGGCGGCGATAAAGCTGATGGAAAACGCCCGCTGACGGGTACTGGAGAACTCAGTGATCATCGAAGTGGCGATGGGATAGTCTGCACCGATGACAATGCCGATAAGTACCCGCATCACCAACAGTTCGACGGGGGATGAAACAAACATCGTCGCCACCGATATCACGCCGATGGCGATGATATCAATGAGGAACATTTTGCGCCGTCCGACTTTATCGGAAATATAACCAAACAGCGATGTGCCAACGAACAGCCCGGCGAGCGTTCCCGCGCCCAGCAAGCCAATCCAGTCAGCGTCCAGTTTTAGCGCCGGCGTCAGTTGCTCCAGCGCCACGCCAATCATTACCAGTATATAACCATCCAGAAACGGACCACCGCTTCCCCACAGCAAAATGCGGCGGTGAATAGAGGAAAATTTAAGATCGTCAAAGTTTCTGGACGGTTGCAT > 489 ESCCO14588_5418 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 arabinose-proton_symporter EEC28131.1 11 MVTINTESALTPRSLRDTRRMNMFVSVAAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEIRESLKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFVGITFWLIPETKNVTLEHIERKLMAGEKLRNIGV gamma_subgroup Escherichia_coli_O157:H7_str._TW14588 Escherichia_coli_O157:H7_str._TW14588 ABKY02000002 457951..459369 Sutton,G._and_Whittam,T.S. NA 0:1419 DNA_Source:_STEC_CenterNational_Food_Safety_and_Toxicology_Center_(NFSTC)Michigan_State_University_(MSU)http://foodsafe.msu.edu/. NA 11-DEC-2008 Escherichia_coli_O157:H7_str._TW14588_gcontig_1117790713604,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B6ZVW5_ECO57.gb Escherichia_Castellani_and_Chalmers_1919 217319008 Submitted_(26-FEB-2008)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ABKY02000002 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1419 NA genomic_DNA NA TW14588 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 502346 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ABKY02000002.1 ATGGTTACTATCAATACGGAATCTGCTTTAACGCCACGTTCTTTGCGTGATACGCGGCGTATGAATATGTTTGTTTCGGTAGCTGCTGCGGTCGCAGGATTGTTATTTGGTCTTGATATCGGCGTAATCGCCGGAGCGTTGCCGTTCATTACCGATCACTTTGTGCTGACCAGTCGTTTGCAGGAATGGGTGGTTAGTAGCATGATGCTCGGCGCAGCAATTGGTGCGCTGTTTAATGGTTGGCTGTCGTTCCGCCTGGGGCGTAAATACAGCCTGATGGCGGGGGCCATCCTGTTTGTACTCGGTTCTATAGGGTCCGCTTTTGCGACCAGCGTAGAGATGTTAATCGCCGCTCGTGTGGTGCTGGGCATTGCTGTCGGGATCGCGTCTTACACCGCTCCTCTGTATCTTTCTGAAATGGCAAGTGAAAACGTTCGCGGTAAGATGATCAGTATGTACCAGTTGATGGTCACACTCGGCATCGTGCTGGCGTTTTTATCCGATACAGCGTTCAGTTATAGCGGTAACTGGCGCGCAATGTTGGGGGTTCTTGCTTTACCAGCAGTCCTGCTGATTATTCTGGTGGTCTTCCTGCCAAATAGCCCGCGCTGGCTGGCGGAAAAGGGGCGTCATATTGAGGCGGAAGAAGTGTTGCGTATGCTGCGCGATACGTCGGAAAAAGCGCGAGAAGAACTCAACGAAATTCGTGAAAGCCTGAAGTTAAAACAAGGCGGTTGGGCACTGTTTAAGATCAACCGTAACGTCCGTCGTGCTGTGTTTCTCGGTATGTTGTTGCAGGCGATGCAGCAGTTTACCGGTATGAACATCATCATGTACTATGCGCCGCGTATCTTCAAAATGGCGGGCTTTACGACCACAGAACAACAGATGATTGCGACTCTGGTCGTGGGACTGACCTTTATGTTCGCGACCTTCATTGCGGTCTTTACGGTAGATAAAGCAGGTCGTAAACCGGCTCTGAAAATTGGTTTCAGCGTGATGGCGTTAGGCACTCTGGTGCTGGGCTATTGCCTGATGCAGTTTGATAACGGTACGGCTTCCAGTGGCTTGTCCTGGCTCTCTGTTGGCATGACGATGATGTGTATTGCCGGTTATGCGATGAGCGCCGCGCCAGTGGTGTGGATCCTGTGCTCTGAAATTCAGCCGCTGAAATGCCGCGATTTCGGTATTACCTGTTCGACGACGACAAACTGGGTGTCGAATATGATTATCGGCGCGACCTTCCTGACACTGCTTGATAGCATTGGCGCTGCCGGTACGTTCTGGCTCTACACTGCGCTGAACATTGCGTTTGTGGGCATCACTTTCTGGCTCATTCCGGAAACCAAAAATGTCACGCTGGAACATATCGAACGCAAACTGATGGCAGGCGAGAAGTTGAGAAATATCGGCGTCTGA > 490 EC55989_4358 Evidence_4_:_Homologs_of_previously_reported_genes_of_unknown_function galactose_mutarotase YP_002405263.1 11 MSRPMNKKPLLTATSGNNLMKTERKNEHYLALQQAFDAPWPGPVGELVTLEKGNIHLQIYPHDGARITSLKAFGSEVLRQWQPQRRAFQYGCFPMVPWAGRLGNATLNAGGQCYSLPANKPPHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEVIQTFLLENDALVLQLEVHSYADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRISPQAGPWDDCFGFYDGVKVKLLWPGKLAMTMISSANSLVVFDKQPDATCINPLTQAPNAINLTPELVTPDRPLVIETRWQFTPES gamma_subgroup Escherichia_coli_55989 Escherichia_coli_55989 NC_011748 4453614..4454963 Touchon,M.,_Hoede,C.,_Tenaillon,O.,_Barbe,V.,_Baeriswyl,S.,_Bidet,P.,_Bingen,E.,_Bonacorsi,S.,_Bouchier,C.,_Bouvet,O.,_Calteau,A.,_Chiapello,H.,_Clermont,O.,_Cruveiller,S.,_Danchin,A.,_Diard,M.,_Dossat,C.,_Karoui,M.E.,_Frapy,E.,_Garry,L.,_Ghigo,J.M.,_Gilles,A.M.,_Johnson,J.,_Le_Bouguenec,C.,_Lescat,M.,_Mangenot,S.,_Martinez-Jehanne,V.,_Matic,I.,_Nassif,X.,_Oztas,S.,_Petit,M.A.,_Pichon,C.,_Rouy,Z.,_Ruf,C.S.,_Schneider,D.,_Tourret,J.,_Vacherie,B.,_Vallenet,D.,_Medigue,C.,_Rocha,E.P._and_Denamur,E. NA 1282:>1350 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU928145.Annotation_results_relative_to_BLAST_similarities,_COGassignations,_enzymatic_function_prediction_(PRIAM_software),_TMHMMand_SignalP_predictions,_and_synteny_conservation_(Syntonizersoftware)_are_available_in_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage.COMPLETENESS:_full_length. NA 25-JAN-2012 Escherichia_coli_55989_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B7L9D3_ECO55.gb Escherichia_Castellani_and_Chalmers_1919 218693476 PLoS_Genet._5_(1),_E1000344_(2009) NA NC_011748 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19165319 1350 NA genomic_DNA NA 55989 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 585055 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Organised_genome_dynamics_in_the_Escherichia_coli_species_results_in_highly_diverse_adaptive_paths NA NC_011748.1 ATGTCTGAAAAGTTACCCGCACCGCGTGAAGGGCTTTCCGGTAAAGCCATGAGACGTGTCGTTATGGGCAGTTTCGCAGGCGCGTTAATGGAATGGTATGACTTCTTTATTTTTGGCACGGCAGCAGGACTGGTATTTGCACCGCTGTTTTATCCAGACAGCGATCCTTTTATAGGTCTTATAGCCGCCTTTGCTACCTTTGGCGTTGGTTTTTTGACCCGTCCTTTAGGTGGTATCGTCTTTGGCCATTTTGGCGATAAAATTGGGCGAAAAATAACACTTATCTGGACACTGGCTATTGTCGGTTGCTCCACATTTTTGATTGGTTTTATTCCGACGTATCAGGAAATTGGGATCTGGGCACCGCTCATATTAATGGCGCTGCGTTTAATTCAGGGCTTTGGTCTTGGTGGCGAGTATGGCGGAGCGGCATTGATGACCATAGAATCAGCGCCCGAATCCCGACGCGGATTTTTAGGTTCACTCCCGCAAACGGCTGCGTCTGTGGGTATTATGCTGGCAACCGGTATTTTTGCTCTCTGTAACCATTTTCTTACTTCGGAGCAGTTTCTCTCCTGGGGATGGCGCATTCCGTTTTGGCTTTCTGCGGTGATGTTGATCGTTGGGCTGTTTATCCGCCTGCATACCGAAGAAACGCTGGATTTTCAAAAGCAAAAAACGACGAATAATAAAGAAAAGTCCGTTCCTCCGTTGATTGAATTATTCAAAAAACATCCACGAAATATTTTATTGGCACTGGGTGCGAGGCTGGCGGAAAGTGTCTCCTCTAATATTATTAACGCCTTTGGTATTGTCTATATTTCCAGCCAATTAGCATTGTCGCGAGATATTCCCCTGACGGGTATGTTGATTGCCTCGGCGATCGGTATTTTCAGTTGTCCATTGGTTGGATGGTTATCAGATCGTATAGGTCAAAAAAGTCTGTATTTGTCGGGAGCAGGATTTTGTGTCCTGTTCGCGTTTCCTTTCTTCTTATTACTGGATAGCAAAAGTACGCTCATCATCTGGTGCAGTATGATCCTCGGCTACAACTTAGGTCCGACGATGATGTTTGCCGTGCAGCCAACACTTTTCACCCGCATGTTCGGTACCAAAGTACGATATACCGGCCTTTCTTTTGCTTATCAATTTTCCGCGATTCTTGGCGGACTAAGCCCCCTTATCGCCTCAAGTTTGCTGGCGCTAGGGGGAGGAAAACCGTGGTATGTCGCTCTGTTTTTATTTGCTGTCTCATTTCTTTCCTTTGTTTGCGTCTGGCTGATTGAGCCGACCGATGAACAAGAAACCGCTTCTTACCGCTACATCAGGGAACAATCTCATGAAAACTGA > 491 EC55989_3118 Evidence_1b_:_Function_experimentally_demonstrated_in_the_studied_species;_PubMedId_:_7030324,_90239116,_91154204,_2836407,_3543693,_6319708;_Product_type_t_:_transporter arabinose_transporter YP_002404104.1 11 MVTINTESALTPRSLRDTRRMNMFVSVAAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEIRESLKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFVGITFWLIPETKNVTLEHIERKLMAGEKLRNIGV gamma_subgroup Escherichia_coli_55989 Escherichia_coli_55989 NC_011748 3197916..3199334 Touchon,M.,_Hoede,C.,_Tenaillon,O.,_Barbe,V.,_Baeriswyl,S.,_Bidet,P.,_Bingen,E.,_Bonacorsi,S.,_Bouchier,C.,_Bouvet,O.,_Calteau,A.,_Chiapello,H.,_Clermont,O.,_Cruveiller,S.,_Danchin,A.,_Diard,M.,_Dossat,C.,_Karoui,M.E.,_Frapy,E.,_Garry,L.,_Ghigo,J.M.,_Gilles,A.M.,_Johnson,J.,_Le_Bouguenec,C.,_Lescat,M.,_Mangenot,S.,_Martinez-Jehanne,V.,_Matic,I.,_Nassif,X.,_Oztas,S.,_Petit,M.A.,_Pichon,C.,_Rouy,Z.,_Ruf,C.S.,_Schneider,D.,_Tourret,J.,_Vacherie,B.,_Vallenet,D.,_Medigue,C.,_Rocha,E.P._and_Denamur,E. NA 0:1419 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU928145.Annotation_results_relative_to_BLAST_similarities,_COGassignations,_enzymatic_function_prediction_(PRIAM_software),_TMHMMand_SignalP_predictions,_and_synteny_conservation_(Syntonizersoftware)_are_available_in_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage.COMPLETENESS:_full_length. NA 25-JAN-2012 Escherichia_coli_55989_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B7LF18_ECO55.gb Escherichia_Castellani_and_Chalmers_1919 218693476 PLoS_Genet._5_(1),_E1000344_(2009) NA NC_011748 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19165319 1419 NA genomic_DNA NA 55989 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 585055 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Organised_genome_dynamics_in_the_Escherichia_coli_species_results_in_highly_diverse_adaptive_paths NA NC_011748.1 TCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTGATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAACGTACCGGCAGCGCCAATGCTATCAAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACCCAGTTTGTCGTCGTCGAACAGGTAATACCGAAATCGCGGCATTTCAGCGGCTGAATTTCAGAGCACAGGATCCACACCACTGGCGCGGCGCTCATCGCATAACCGGCAATACACATCATCGTCATGCCAACAGAGAGCCAGGACAAGCCACTGGAAGCCGTACCGTTATCAAACTGCATCAGGCAATAGCCCAGCACCAGAGTGCCTAACGCCATCACGCTGAAACCAATTTTCAGAGCCGGTTTACGACCTGCTTTATCTACCGTAAAGACCGCAATGAAGGTCGCGAACATAAAGGTCAGTCCCACGACCAGAGTCGCAATCATCTGTTGTTCTGTGGTCGTAAAGCCCGCCATTTTGAAGATACGCGGCGCATAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGTTGATCTTAAACAGTGCCCAACCGCCTTGTTTTAACTTCAGGCTTTCACGAATTTCGTTGAGTTCTTCTCGCGCTTTTTCCGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCGCCAGCCAGCGCGGGCTATTTGGCAGGAAGACCACCAGAATAATCAGCAGGACTGCTGGTAAAGCAAGAACCCCCAACATTGCGCGCCAGTTACCGCTATAACTGAACGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTACGACCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCGCCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGATTCCGTATTGATAGTAACCAT > 492 ECIAI1_2951 Evidence_1b_:_Function_experimentally_demonstrated_in_the_studied_species;_PubMedId_:_7030324,_90239116,_91154204,_2836407,_3543693,_6319708;_Product_type_t_:_transporter arabinose_transporter YP_002388303.1 11 MVTINTESALTPRSLRDTRRMNMFVSVAAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEIRESLKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFVGITFWLIPETKNVTLEHIERKLMAGEKLRNIGV gamma_subgroup Escherichia_coli_IAI1 Escherichia_coli_IAI1 NC_011741 3032067..3033485 Touchon,M.,_Hoede,C.,_Tenaillon,O.,_Barbe,V.,_Baeriswyl,S.,_Bidet,P.,_Bingen,E.,_Bonacorsi,S.,_Bouchier,C.,_Bouvet,O.,_Calteau,A.,_Chiapello,H.,_Clermont,O.,_Cruveiller,S.,_Danchin,A.,_Diard,M.,_Dossat,C.,_Karoui,M.E.,_Frapy,E.,_Garry,L.,_Ghigo,J.M.,_Gilles,A.M.,_Johnson,J.,_Le_Bouguenec,C.,_Lescat,M.,_Mangenot,S.,_Martinez-Jehanne,V.,_Matic,I.,_Nassif,X.,_Oztas,S.,_Petit,M.A.,_Pichon,C.,_Rouy,Z.,_Ruf,C.S.,_Schneider,D.,_Tourret,J.,_Vacherie,B.,_Vallenet,D.,_Medigue,C.,_Rocha,E.P._and_Denamur,E. NA 0:1419 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU928160.Annotation_results_relative_to_BLAST_similarities,_COGassignations,_enzymatic_function_prediction_(PRIAM_software),_TMHMMand_SignalP_predictions,_and_synteny_conservation_(Syntonizersoftware)_are_available_in_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage.COMPLETENESS:_full_length. NA 07-APR-2011 Escherichia_coli_IAI1_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B7LY97_ECO8A.gb Escherichia_Castellani_and_Chalmers_1919 218552585 PLoS_Genet._5_(1),_E1000344_(2009) NA NC_011741 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19165319 1419 NA genomic_DNA NA IAI1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 585034 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Organised_genome_dynamics_in_the_Escherichia_coli_species_results_in_highly_diverse_adaptive_paths NA NC_011741.1 TCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTGATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAACGTACCGGCAGCGCCAATGCTATCAAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACCCAGTTTGTCGTCGTCGAACAGGTAATACCGAAATCGCGGCATTTCAGCGGCTGAATTTCAGAGCACAGGATCCACACCACTGGCGCGGCGCTCATCGCATAACCGGCAATACACATCATCGTCATGCCAACAGAGAGCCAGGACAAGCCACTGGAAGCCGTACCGTTATCAAACTGCATCAGGCAATAGCCCAGCACCAGAGTGCCTAACGCCATCACGCTGAAACCAATTTTCAGAGCCGGTTTACGACCTGCTTTATCTACCGTAAAGACCGCAATGAAGGTCGCGAACATAAAGGTCAGTCCCACGACCAGAGTCGCAATCATCTGTTGTTCTGTGGTCGTAAAGCCCGCCATTTTGAAGATACGCGGCGCATAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGTTGATCTTAAACAGTGCCCAACCGCCTTGTTTTAACTTCAGGCTTTCACGAATTTCGTTGAGTTCTTCTCGCGCTTTTTCCGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCGCCAGCCAGCGCGGGCTATTTGGCAGGAAGACCACCAGAATAATCAGCAGGACTGCTGGTAAAGCAAGAACCCCCAACATTGCGCGCCAGTTACCGCTATAACTGAACGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTACGACCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCGCCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGATTCCGTATTGATAGTAACCAT > 493 ECIAI1_2063 Evidence_1b_:_Function_experimentally_demonstrated_in_the_studied_species;_PubMedId_:_5332864,_9524262;_Product_type_t_:_transporter shikimate_transporter YP_002387471.1 11 MDSTLISTRPDEGTLSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPENKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDDQFLSWGWRIPFLFSIVLVLGALWVRNGMEESAEFEQQQHNQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALITYFAGNWHSVAIYLLAGCLISAMTALLMKDNQRA gamma_subgroup Escherichia_coli_IAI1 Escherichia_coli_IAI1 NC_011741 2116271..2117587 Touchon,M.,_Hoede,C.,_Tenaillon,O.,_Barbe,V.,_Baeriswyl,S.,_Bidet,P.,_Bingen,E.,_Bonacorsi,S.,_Bouchier,C.,_Bouvet,O.,_Calteau,A.,_Chiapello,H.,_Clermont,O.,_Cruveiller,S.,_Danchin,A.,_Diard,M.,_Dossat,C.,_Karoui,M.E.,_Frapy,E.,_Garry,L.,_Ghigo,J.M.,_Gilles,A.M.,_Johnson,J.,_Le_Bouguenec,C.,_Lescat,M.,_Mangenot,S.,_Martinez-Jehanne,V.,_Matic,I.,_Nassif,X.,_Oztas,S.,_Petit,M.A.,_Pichon,C.,_Rouy,Z.,_Ruf,C.S.,_Schneider,D.,_Tourret,J.,_Vacherie,B.,_Vallenet,D.,_Medigue,C.,_Rocha,E.P._and_Denamur,E. NA 0:1317 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU928160.Annotation_results_relative_to_BLAST_similarities,_COGassignations,_enzymatic_function_prediction_(PRIAM_software),_TMHMMand_SignalP_predictions,_and_synteny_conservation_(Syntonizersoftware)_are_available_in_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage.COMPLETENESS:_full_length. NA 07-APR-2011 Escherichia_coli_IAI1_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B7M3B9_ECO8A.gb Escherichia_Castellani_and_Chalmers_1919 218552585 PLoS_Genet._5_(1),_E1000344_(2009) NA NC_011741 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19165319 1317 NA genomic_DNA NA IAI1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 585034 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Organised_genome_dynamics_in_the_Escherichia_coli_species_results_in_highly_diverse_adaptive_paths NA NC_011741.1 ATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTGGTGCCGTCGTCGACTGGTATGATTTTTTACTCTATGGCATCACCGCCGCACTGGTGTTTAATCGCGAGTTTTTCCCGCAAGTAAGCCCGGCGATGGGAACGCTCGCCGCATTTGCCACCTTTGGCGTCGGATTCCTTTTCCGTCCGCTCGGCGGTGTCATTTTCGGTCACTTTGGCGACCGACTGGGACGTAAGCGCATGTTAATGCTGACCGTCTGGATGATGGGCATCGCGACAGCCTTGATTGGTATTCTTCCTTCATTCTCGACCATTGGGTGGTGGGCACCTATTTTGCTGGTGACACTGCGTGCCATTCAGGGATTTGCCGTCGGCGGCGAATGGGGAGGCGCGGCGTTGCTTTCCGTTGAAAGTGCGCCGGAAAATAAAAAAGCCTTTTACAGTAGCGGTGTACAAGTTGGCTACGGAGTAGGTTTACTGCTTTCAACCGGACTGGTTTCATTGATCAGTATGATGACAACTGACGATCAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTATTTAGCATCGTACTGGTACTGGGAGCATTGTGGGTGCGCAATGGCATGGAAGAGTCCGCGGAATTTGAACAACAGCAACATAATCAAGCGGCCGCGAAAAAACGCATCCCGGTTATCGAAGCGCTGTTACGACATCCCGGTGCTTTCCTGAAGATTATTGCGCTACGACTGTGCGAATTGCTGACGATGTACATCGTTACTGCCTTTGCACTTAATTATTCAACCCAGAATATGGGGTTACCGCGCGAACTTTTCCTTAATATTGGTTTGCTGGTAGGTGGATTAAGCTGCTTGACAATTCCCTGTTTTGCCTGGCTTGCCGATCGTTTTGGTCGCCGCAGGGTTTATATCACAGGTGCGTTAATCGGAACGTTGAGCGCATTTCCTTTCTTTATGGCGCTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTGCGCATGACATGGTGGTGTGTGTGCAACAACCGATGTTTACCGAAATGTTTGGTGCCAGTTATCGCTATAGTGGTGCTGGAGTCGGTTATCAGGTCGCCAGTGTGGTTGGCGGTGGATTTACACCTTTTATTGCCGCTGCACTCATCACTTACTTTGCCGGGAACTGGCATAGCGTCGCCATTTATTTGCTGGCTGGATGTCTGATTTCCGCAATGACCGCTTTGTTGATGAAAGACAATCAACGCGCTTGA > 494 ECS88_4525 Evidence_3_:_Function_proposed_based_on_presence_of_conserved_amino_acid_motif,_structural_feature_or_limited_homology;_Product_type_pt_:_transporter transmembrane_transport_protein YP_002394034.1 11 MQPSQPAEKANVSSADLRRAAWTCSLGSALEYYDFALYSLASAIIFGPLFFPNQEPGMALIASFGTYFLGFAVRPVGGIIFGSLGDRLGRKFVLLATVLLMGIASTLIGVLPTYETAGIWAPIMLIALRLLQGLGAGAEQAGAAVLMTEYAPDGKRGYYAALPFLGIQIGTFMASAVYFILLHNVTNLAETWWWRLPFLSSVVIIAVAIYIRLHLKESPSFAKLEARQQVTESPLRNLLKTSRRNVFVGIGLRLAENGGSSIYQALAISYIVGVVGLDKSVGTLCLMSAVVVGAIMVPIAGWLTDRFGRVLVYRSLAIFQLLITFPVWWSFSHGNVPVTIVSLSLALGIGAWGMFGAQGAFLPELFGARHRYIGVALAREVSAVIAGGIAPLVGSAIISWVIHTNDPSGIAAWMPIAIYLSLLTVGTIIATFFAPETRDRDLDDLADAETISVSQHNQTTGTSHDA gamma_subgroup Escherichia_coli_S88 Escherichia_coli_S88 NC_011742 4500571..4501971 Touchon,M.,_Hoede,C.,_Tenaillon,O.,_Barbe,V.,_Baeriswyl,S.,_Bidet,P.,_Bingen,E.,_Bonacorsi,S.,_Bouchier,C.,_Bouvet,O.,_Calteau,A.,_Chiapello,H.,_Clermont,O.,_Cruveiller,S.,_Danchin,A.,_Diard,M.,_Dossat,C.,_Karoui,M.E.,_Frapy,E.,_Garry,L.,_Ghigo,J.M.,_Gilles,A.M.,_Johnson,J.,_Le_Bouguenec,C.,_Lescat,M.,_Mangenot,S.,_Martinez-Jehanne,V.,_Matic,I.,_Nassif,X.,_Oztas,S.,_Petit,M.A.,_Pichon,C.,_Rouy,Z.,_Ruf,C.S.,_Schneider,D.,_Tourret,J.,_Vacherie,B.,_Vallenet,D.,_Medigue,C.,_Rocha,E.P._and_Denamur,E. NA 0:1401 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU928161.Annotation_results_relative_to_BLAST_similarities,_COGassignations,_enzymatic_function_prediction_(PRIAM_software),_TMHMMand_SignalP_predictions,_and_synteny_conservation_(Syntonizersoftware)_are_available_in_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage.COMPLETENESS:_full_length. NA 25-JAN-2012 Escherichia_coli_S88_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B7MJ41_ECO45.gb Escherichia_Castellani_and_Chalmers_1919 218556939 PLoS_Genet._5_(1),_E1000344_(2009) NA NC_011742 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19165319 1401 NA genomic_DNA NA S88 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 585035 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Organised_genome_dynamics_in_the_Escherichia_coli_species_results_in_highly_diverse_adaptive_paths NA NC_011742.1 TTATGCGTCATGGGAGGTGCCCGTAGTCTGGTTATGTTGGGAAACGCTGATCGTTTCAGCGTCGGCAAGATCATCAAGATCACGATCGCGTGTTTCTGGAGCAAAGAAAGTCGCAATAATCGTACCAACGGTCAGCAGACTAAGGTAAATAGCGATTGGCATCCAGGCAGCAATACCACTGGGATCGTTAGTGTGGATCACCCAGGAAATGATTGCAGAACCAACCAGTGGCGCGATCCCTCCGGCAATAACGGCAGAAACTTCCCTTGCCAGTGCGACGCCAATATAACGATGGCGAGCACCAAAGAGTTCAGGCAGAAAAGCACCTTGTGCACCAAACATACCCCAGGCTCCAATCCCTAAGGCCAGAGAAAGAGAGACAATAGTGACAGGAACATTACCGTGGCTGAAAGACCACCACACCGGAAAGGTAATCAACAACTGAAAAATCGCCAGACTACGATAGACAAGAACCCTGCCGAAGCGATCGGTCAGCCAACCGGCAATAGGCACCATAATTGCACCGACTACTACCGCAGACATCAGGCATAGCGTACCAACTGATTTGTCCAGCCCAACCACACCAACGATATAACTGATCGCTAAAGCCTGATAAATCGACGAGCCGCCGTTTTCTGCCAGACGTAAGCCAATCCCGACGAAGACATTACGGCGTGATGTTTTCAGCAAATTTCGTAAGGGTGATTCTGTAACTTGTTGACGAGCTTCGAGTTTTGCGAATGATGGCGATTCTTTAAGATGCAGTCGAATATAAATAGCCACCGCGATAATCACCACGCTGGAGAGGAAGGGCAAGCGCCACCACCAGGTTTCGGCAAGATTTGTCACATTATGCAGCAGGATGAAGTAAACGGCAGATGCCATAAACGTACCAATCTGGATTCCGAGGAACGGCAGCGCGGCGTAATAACCCCGTTTGCCGTCAGGAGCATATTCGGTCATCAGTACGGCGGCTCCCGCCTGTTCAGCCCCAGCACCAAGCCCTTGCAGCAGGCGTAATGCAATAAGCATAATTGGCGCCCAGATTCCCGCTGTTTCGTAAGTGGGTAATACCCCGATCAACGTGCTGGCGATTCCCATTAACAACACCGTTGCTAACAGGACGAACTTACGGCCCAAACGATCACCTAATGAGCCGAAGATAATTCCGCCTACAGGTCTGACGGCAAATCCGAGAAAGTAGGTGCCAAAACTGGCGATCAGCGCCATTCCCGGTTCCTGATTAGGAAAAAAGAGTGGACCAAAAATAATGGCGGATGCCAGGCTGTAAAGTGCGAAATCGTAGTATTCCAGTGCGCTGCCGAGAGAGCAGGTCCACGCCGCGCGACGCAGATCTGCCGATGAAACATTCGCTTTCTCTGCTGGTTGTGAAGGTTGCAT > 495 ECUMN_3099 Evidence_3_:_Function_proposed_based_on_presence_of_conserved_amino_acid_motif,_structural_feature_or_limited_homology;_Product_type_pt_:_putative_transporter putative_transporter YP_002413786.1 11 MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV gamma_subgroup Escherichia_coli_UMN026 Escherichia_coli_UMN026 NC_011751 3200821..3202158 Touchon,M.,_Hoede,C.,_Tenaillon,O.,_Barbe,V.,_Baeriswyl,S.,_Bidet,P.,_Bingen,E.,_Bonacorsi,S.,_Bouchier,C.,_Bouvet,O.,_Calteau,A.,_Chiapello,H.,_Clermont,O.,_Cruveiller,S.,_Danchin,A.,_Diard,M.,_Dossat,C.,_Karoui,M.E.,_Frapy,E.,_Garry,L.,_Ghigo,J.M.,_Gilles,A.M.,_Johnson,J.,_Le_Bouguenec,C.,_Lescat,M.,_Mangenot,S.,_Martinez-Jehanne,V.,_Matic,I.,_Nassif,X.,_Oztas,S.,_Petit,M.A.,_Pichon,C.,_Rouy,Z.,_Ruf,C.S.,_Schneider,D.,_Tourret,J.,_Vacherie,B.,_Vallenet,D.,_Medigue,C.,_Rocha,E.P._and_Denamur,E. NA 0:1338 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU928163.Annotation_results_relative_to_BLAST_similarities,_COGassignations,_enzymatic_function_prediction_(PRIAM_software),_TMHMMand_SignalP_predictions,_and_synteny_conservation_(Syntonizersoftware)_are_available_in_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage.COMPLETENESS:_full_length. NA 11-APR-2011 Escherichia_coli_UMN026_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B7N705_ECOLU.gb Escherichia_Castellani_and_Chalmers_1919 218703261 PLoS_Genet._5_(1),_E1000344_(2009) NA NC_011751 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19165319 1338 NA genomic_DNA NA UMN026 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 585056 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Organised_genome_dynamics_in_the_Escherichia_coli_species_results_in_highly_diverse_adaptive_paths NA NC_011751.1 TTAAACGCTAACAGAATGTTCATTCGCACCTCCAACATTTCCCGCCGCCACCAGCGGGAGTGCTTTGGTTTCTGGTGCCCATAGCCAGGTCACGACAAAACCAACCAACAACACTGCCGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCCAACCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAACAAGCCATCACTACCAGCGTTGCCGCCAGCAGCAAAAAACTTCCCAGCAAAAATTTGCGATGTGCCAGCAGGTGCGTCAGAACTAATCCCAGCAGCGCACCCACAATTAACAACGCATTAAGCATCAGGCTAGCGGTCAACGCATCTTCCAGACCAATAGTCTGGGCGATAGTTGGCAGCCAGGTATAAATCACAAACCATGGGATTACGAGGCAGACAAAGAAGACGCTGTTAAACGCTGTGCGCCGCCAGTAGCGCGAAGAGAACAAGGTTTTGATGTGTTTATGGGTCGCCGTTGCCACTTCATCGCCCAGTAAAACATGGGGACCAAAATAGCGATGCACGATAGCGTGAGCTTCTGCAAAACGCCCCTGGCGCAGTAGCCAGCGTGGCGATTCTGGCGTTCCCCAGCGTAATAACGTAATCAACAATGCGGGCAGAGCTGCCGATGCCAGCAGCCAGCGCCAGGCCTCCGGGCTTTCGCTAATAAAGTGATGTCCGGCAATACTTGCCAGCACATAGCCTACAGTCCACACCACGCTGAACGCGCCCAGCAAAATACCGCGGTGGCGGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCGACTGAGTAATCGCCTCCCAGACCAATGCCAATCAAAATGCGCAGTCCAATAAGATGCTCTGGCGTGGTGGCAAAAAATTGTAAAAACGAAGCAAGCGTAATCAGCAAAAAGCTGAAGGTGAAGATTTTTTGTCGCCCAATATGGTCGGAGATCCAGCCCAGAACCAGGCTGCCAAGAAACAAACCAAGGAGTGCTGAGCCGCCAATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGGACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGTGGTAAATCATCCATTCGCACCGGTGAAGTGTTCAT > 496 ECIAI39_1064 Evidence_1b_:_Function_experimentally_demonstrated_in_the_studied_species;_PubMedId_:_5332864,_9524262;_Product_type_t_:_transporter shikimate_transporter YP_002407079.1 11 MDSTLISTRPDEGTLSLSRARRAALGSIAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLGALWVRNGMEESAEFEQQQHNQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALITYFAGNWHSVAIYLLAGCLISAMTALLMKDNQRS gamma_subgroup Escherichia_coli_IAI39 Escherichia_coli_IAI39 NC_011750 1126258..1127574 Touchon,M.,_Hoede,C.,_Tenaillon,O.,_Barbe,V.,_Baeriswyl,S.,_Bidet,P.,_Bingen,E.,_Bonacorsi,S.,_Bouchier,C.,_Bouvet,O.,_Calteau,A.,_Chiapello,H.,_Clermont,O.,_Cruveiller,S.,_Danchin,A.,_Diard,M.,_Dossat,C.,_Karoui,M.E.,_Frapy,E.,_Garry,L.,_Ghigo,J.M.,_Gilles,A.M.,_Johnson,J.,_Le_Bouguenec,C.,_Lescat,M.,_Mangenot,S.,_Martinez-Jehanne,V.,_Matic,I.,_Nassif,X.,_Oztas,S.,_Petit,M.A.,_Pichon,C.,_Rouy,Z.,_Ruf,C.S.,_Schneider,D.,_Tourret,J.,_Vacherie,B.,_Vallenet,D.,_Medigue,C.,_Rocha,E.P._and_Denamur,E. NA 0:1317 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU928164.Annotation_results_relative_to_BLAST_similarities,_COGassignations,_enzymatic_function_prediction_(PRIAM_software),_TMHMMand_SignalP_predictions,_and_synteny_conservation_(Syntonizersoftware)_are_available_in_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage.COMPLETENESS:_full_length. NA 28-FEB-2011 Escherichia_coli_IAI39_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B7NR90_ECO7I.gb Escherichia_Castellani_and_Chalmers_1919 218698419 PLoS_Genet._5_(1),_E1000344_(2009) NA NC_011750 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19165319 1317 NA genomic_DNA NA IAI39 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 585057 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Organised_genome_dynamics_in_the_Escherichia_coli_species_results_in_highly_diverse_adaptive_paths NA NC_011750.1 TCACGAGCGTTGATTGTCTTTCATCAATAAAGCGGTCATTGCAGAAATCAGGCATCCAGCCAGCAAATAAATGGCGACGCTATGCCAGTTCCCGGCAAAGTAAGTGATGAGTGCAGCGGCAATAAAAGGTGTAAATCCACCGCCAACCACACTGGCAACCTGATAACCGACTCCAGCACCACTGTAGCGATAACTGGCACCAAACATTTCGGTAAACATCGGTTGTTGCACACACACCACCATGTCATGCGCAATGTTTGCCAGCATTATGGAGAAGAAAACTATCCAGAAAATAGATTGTGCTTCAAGCGCCATAAAGAAAGGAAATGCGCTCAACGTTCCGATCAACGCGCCTGTAATATAAACCCTGCGCCGACCAAAACGATCGGCAAGCCAGGCAAAACAGGGAATTGTCAGGCAGCTTAATCCACCTACCAGCAAACCAATATTAAGGAAAAGTTCGCGCGGTAACCCCATATTCTGGGTTGAATAATTAAGTGCAAAGGCAGTAACAATGTACATCGTCAGCAACTCGCACAGTCGTAGTGCAATAATCTTCAGGAAAGCACCGGGATGTCGTAACAGAGCTTCGATAACCGGGATGCGTTTTTTCGCGGCCGCTTGATTATGTTGCTGTTGTTCAAATTCCGCGGACTCCTCCATGCCATTGCGCACCCACAATGCTCCCAGTACCAGTACGATGCTAAACAGGAAAGGAATGCGCCAGCCCCAGCTTAAAAACTGTTCGTCAGTCGTCATCATACTGATCAATGAAACCAGTCCGGTTGAAAGCAGTAAACCTACACCGTAGCCAACTTGTACACCGCTACTGTAAAAGGCTTTTTTATTTTTCGGCGCACTTTCAACGGAAAGCAACGCTGCGCCTCCCCATTCGCCGCCGACGGCAAATCCCTGAATGGCACGCAGTGTCACCAGCAAAATAGGTGCCCACCACCCAATGGTCGAGAATGAAGGAAGAATACCAATTAAGGCTGTCGCGATGCCCATCATCCAGACGGTCAGCATTAACATGCGCTTACGTCCCAGTCGGTCGCCAAAGTGACCGAAAATGACACCGCCGAGCGGTCGGAAAAGGAAGCCGACACCAAAGGTGGCAAATGCGGCGAGCGTTCCCATCGCCGGGCTTACTTGCGGGAAAAACTCGCGATTAAACACCAGTGCGGCGGTAATGCCATAGAGTAGAAAATCATACCAGTCGACGACGGCACCAGCGATACTGCCTAACGCAGCTCGTCGGGCGCGACTTAACGAAAGCGTCCCTTCATCGGGACGAGTGGAGATGAGCGTGGAGTCCAT > 497 ECIAI39_1286 Evidence_3_:_Function_proposed_based_on_presence_of_conserved_amino_acid_motif,_structural_feature_or_limited_homology;_Product_type_pt_:_putative_transporter putative_MFS_superfamily_transporter YP_002407294.1 11 MSYSGNVVLAKLVSNGWSNNFLNAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFLLGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAESQLREVEQQIEREKSVRLPPLTLNQSNSKANIINGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSALLIIIAVLGYIYSIQTTEWAVLIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFMVLGVMLVLCALVLSIFGIETRKVSLEEISEVN gamma_subgroup Escherichia_coli_IAI39 Escherichia_coli_IAI39 NC_011750 1350866..1352116 Touchon,M.,_Hoede,C.,_Tenaillon,O.,_Barbe,V.,_Baeriswyl,S.,_Bidet,P.,_Bingen,E.,_Bonacorsi,S.,_Bouchier,C.,_Bouvet,O.,_Calteau,A.,_Chiapello,H.,_Clermont,O.,_Cruveiller,S.,_Danchin,A.,_Diard,M.,_Dossat,C.,_Karoui,M.E.,_Frapy,E.,_Garry,L.,_Ghigo,J.M.,_Gilles,A.M.,_Johnson,J.,_Le_Bouguenec,C.,_Lescat,M.,_Mangenot,S.,_Martinez-Jehanne,V.,_Matic,I.,_Nassif,X.,_Oztas,S.,_Petit,M.A.,_Pichon,C.,_Rouy,Z.,_Ruf,C.S.,_Schneider,D.,_Tourret,J.,_Vacherie,B.,_Vallenet,D.,_Medigue,C.,_Rocha,E.P._and_Denamur,E. NA 0:1251 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU928164.Annotation_results_relative_to_BLAST_similarities,_COGassignations,_enzymatic_function_prediction_(PRIAM_software),_TMHMMand_SignalP_predictions,_and_synteny_conservation_(Syntonizersoftware)_are_available_in_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage.COMPLETENESS:_full_length. NA 28-FEB-2011 Escherichia_coli_IAI39_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B7NT09_ECO7I.gb Escherichia_Castellani_and_Chalmers_1919 218698419 PLoS_Genet._5_(1),_E1000344_(2009) NA NC_011750 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19165319 1251 NA genomic_DNA NA IAI39 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 585057 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Organised_genome_dynamics_in_the_Escherichia_coli_species_results_in_highly_diverse_adaptive_paths NA NC_011750.1 TTGAGTTATTCAGGCAATGTTGTTTTAGCAAAGCTGGTAAGCAATGGATGGTCAAATAATTTTCTCAATGCCGCCTTTACCTCGGCATTAATGTTTGGTTATTTCATCGGCTCTCTTACCGGTGGGTTTATTGGTGACTACTTTGGGCGGCGCAGGGCTTTTCGCATAAATCTTCTCATCGTCGGTATTGCGGCAACAGGGGCCGCTTTTGTCCCTGATATGTACTGGCTCATCTTCTTTCGCTTCCTGATGGGAACAGGAATGGGGGCGCTGATTATGGTTGGCTATGCCTCATTTACGGAGTTTATCCCCGCGACGGTGCGTGGAAAATGGTCCGCGCGGCTCTCATTTGTCGGTAACTGGTCGCCCATGTTGTCTGCGGCGATAGGCGTGGTGGTTATCGCTTTTTTTAGTTGGCGGATAATGTTTCTGCTGGGTGGTATTGGCATACTGTTAGCCTGGTTTCTCTCAGGTAAATACTTTATTGAGTCGCCTCGATGGTTGGCGGGGAAAGGACAAATCGCAGGTGCAGAAAGCCAACTTCGTGAAGTAGAGCAGCAAATTGAAAGAGAGAAGAGTGTTCGTTTACCCCCGCTTACTTTGAATCAGAGCAACAGCAAGGCTAACATAATCAATGGTACTTTCTGGCTGCTGTTTAAAGGGGAAATGTTACGACGTACATTAGTCGCGATTACTGTTTTAATTGCAATGAACATTTCACTTTATACCATCACCGTATGGATACCGACCATATTTGTTAACTCCGGCATTGATGTTGATAAATCAATATTAATGACCGCTGTTATTATGATTGGCGCTCCGGTAGGGATATTTATTGCGGCATTAATTATTGATCATTTTCCTCGTCGATTATTTGGCTCTGCCTTACTTATTATTATTGCTGTGTTAGGCTATATCTATTCAATTCAAACTACAGAGTGGGCGGTTTTAATCTATGGCCTGGTGATGATCTTCTTTTTATACATGTATGTGTGCTTCGCGTCGGCGGTTTATATCCCGGAACTTTGGCCAACGCATTTACGCCTGCGTGGTTCGGGTTTCGTTAATGCCGTCGGACGGATCGTCGCAGTCTTCACGCCCTATGGCGTTGCGGCACTATTAACGCATTATGGGTCAATCACGGTGTTTATGGTGCTTGGCGTGATGTTAGTGCTCTGTGCGCTGGTTCTCTCCATTTTTGGCATCGAAACGCGGAAGGTGTCGCTGGAAGAGATTTCTGAGGTGAATTAA > 498 E2348C_4185 NA aldose-1-epimerase YP_002331643.1 11 MKTERKNEHYLALQQAFDAPWPGPVGELVMLEKGNIHLQIYPHDGARITSLKAFGSEVLRQWQPQRRAFQYSCFPMVPWAGRLGNATLNAGGQCYSLPANKPPHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEVIQTFLLENDALVLQLEVHSYADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRISPQVGPWDDCFGFYDGVKVKLLWPGKLAMTMTSSANSLVVFDKQPDATCINPLTQAPNAINLTPEFVTPDKPLVIETRWQFTPES gamma_subgroup Escherichia_coli_O127:H6_str._E2348/69 Escherichia_coli_O127:H6_str._E2348/69 NC_011601 4382675..4384024 Iguchi,A.,_Thomson,N.R.,_Ogura,Y.,_Saunders,D.,_Ooka,T.,_Henderson,I.R.,_Harris,D.,_Asadulghani,M.,_Kurokawa,K.,_Dean,P.,_Kenny,B.,_Quail,M.A.,_Thurston,S.,_Dougan,G.,_Hayashi,T.,_Parkhill,J._and_Frankel,G. NA 1339:>1350 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_FM180568.COMPLETENESS:_full_length. NA 05-JAN-2012 Escherichia_coli_O127:H6_str._E2348/69_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_B7UNK0_ECO27.gb Escherichia_Castellani_and_Chalmers_1919 215485161 J._Bacteriol._(2008)_In_press NA NC_011601 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18952797 1350 NA genomic_DNA NA E2348/69 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 574521 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_complete_genome_sequence_and_comparative_genome_analysis_of_enteropathogenic_E._coli_O127:H6_strain_E2348/69 NA NC_011601.1 ATGTCTGAAAAGTTACCCGCACCGCGTGAAGGGCTTTCCGGTAAAGCCATGAGACGTGTCGTTATGGGCAGTTTCGCAGGCGCGTTAATGGAATGGTATGACTTCTTTATTTTTGGCACGGCAGCAGGACTGGTATTTGCACCGCTGTTTTATCCAGACAGCGATCCTTTTATAGGTCTTATAGCTTCCTTTGCGACCTTTGGTGTCGGTTTTCTGACTCGTCCTTTAGGTGGCATCGTCTTTGGTCATTTTGGCGATAAAATAGGGCGAAAAATAACGCTTATCTGGACGTTGGCTATTGTCGGTTGCTCCACATTTTTGATTGGTTTTATTCCGACGCATCAGGAAATTGGGATCTGGGCACCGCTCATATTAATGGTGCTACGTTTAATTCAGGGCTTTGGTCTTGGTGGCGAGTACGGCGGAGCGGCATTGATGACCATAGAATCAGCGCCCGAATCCCGACGCGGATTTTTAGGTTCACTCCCGCAAACGGCTGCGTCTGTGGGTATTATGCTGGCAACCGGTATTTTTGCTCTCTGTAACCATTTTCTGACTTCGGAGCAGTTTCTCTCCTGGGGATGGCGCATTCCGTTTTGGCTTTCTGCGGTGATGTTGATCGTTGGGCTGTTTATCCGCCTGCATACCGAAGAAACGCTGGATTTTCAAAAGCAAAAAACGACGAATAATAAAGAAAAGCCCGTTCCTCCGTTGATTGAATTATTCAAAAAACATCCACGAAATATTTTATTGGCACTGGGTGCGAGGCTGGCGGAAAGTGTCTCCTCTAATATTATTAACGCCTTTGGTATTGTCTATATTTCCAGCCAATTAGCATTGTCGCGAGATATTCCCCTGACGGGTATGTTGATTGCCTCGGCGATCGGTATTTTCAGTTGTCCATTGGTTGGATGGTTATCAGATCGTATAGGTCAAAAAAGTCTGTATTTGTCGGGAGCAGGATTTTGTGTCCTGTTCGCGTTTCCTTTCTTCTTATTACTGGATAGCAAAAGTACGCTCATCATCTGGTGCAGTATGATCCTCGGCTACAACTTAGGTCCGACGATGATGTTTGCCGTGCAGCCAACACTTTTCACCCGCATGTTCGGTACCAAAGTACGATATACCGGCCTTTCTTTTGCTTATCAATTTTCCGCGATTCTTGGCGGACTAAGCCCCCTTATCGCCTCAAGTTTGCTGGCGCTAGGGGGAGGAAAACCGTGGTATGTCGCTCTGTTTTTATTTGCTGTCTCAGTTCTTTCCTTTGTTTGCGTCTGGCTGATTGAGCCGACCGATGAACAAGAAACCGCTTCTTACTGCTACATCAGGGAACAATCTCATGAAAACTGA > 499 HMPREF0358_4999 COG:_COG0477;_Pfam:_PF00083;_InterPro:_IPR003663 arabinose_transporter EEJ45142.1 11 MVTINTESALTPRPLRDTRRMNMFVSVAAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEIRESLKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFVGITFWLIPETKNVTLEHIERKLMAGEKLRNIGV gamma_subgroup Escherichia_coli_83972 Escherichia_coli_83972 ACGN01000141 187043..188461 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1419 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_DNA_of_the_sequenced_strain_was_obtained_from_Dr._RichardHull_(contact_information:_Baylor_College_of_Medicine,_Departmentof_Molecular_Virology_and_Microbiology,_One_Baylor_Plaza,_BCM280,Houston,_TX,_77030;_email:_rhull@bcm.edu)._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data,_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data_and_at_least_10_fold_coverage_ofIllumina/Solexa_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_to_the_Illumina/Solexa_data_withmapping_tools_such_as_Mosaic_and_Crossmatch_and_these_data_wereused_for_error_correction_for_this_version_of_the_draft_assembly.This_draft_assembly_meets_the_HMP_draft_quality_standards_(morethan_90%_of_the_genome_is_included_in_contigs,_more_than_90%_of_acore_set_of_bacterial_genes_are_found_with_>_30%_identity_and_>_30%length;_more_than_90%_of_the_bases_in_the_assembly_have_more_than_5fold_sequence_coverage,_the_contig_N50_length_is_greater_than_5kb,the_scaffold_N50_length_is_greater_than_20kb,_and_there_is_lessthan_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_25xSequencing_Technology:_454;_ABI;_Solexa/IlluminaAnnotation_was_added_to_the_contigs_in_April_2009. NA 27-APR-2009 Escherichia_coli_83972_contig00172,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_C2DXP5_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 223714873 Submitted_(08-JAN-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACGN01000141 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1419 NA genomic_DNA NA 83972 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 525281 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ACGN01000141.1 TCAGACGCCGATATTTCTCAACTTTTCGCCTGCCATCAGTTTGCGCTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTGATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAACGTACCGGCAGCGCCAATGCTATCAAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACCCAGTTTGTCGTCGTTGAGCAGGTGATGCCAAAATCGCGGCATTTCAGCGGCTGAATTTCAGAGCACAAGATCCACACCACTGGCGCGGCGCTCATCGCATAACCGGCAATACACATCATCGTCATGCCAACAGAGAGCCAGGACAAGCCACTGGAAGCCGTACCGTTATCAAACTGCATCAGGCAGTAACCCAGCACCAGAGTGCCTAACGCCATCACGCTGAAACCAATTTTCAGAGCCGGCTTACGCCCTGCTTTATCTACCGTAAAGACCGCAATGAAGGTAGCGAACATAAAGGTCAGCCCCACGACCAGAGTCGCAATCATCTGTTGTTCTGTGGTCGTAAAGCCCGCCATTTTGAAGATACGTGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAATACAGCACGACGGACGTTACGGTTGATCTTAAACAGTGCCCAACCGCCCTGTTTTAACTTCAGGCTTTCACGAATTTCGTTGAGTTCTTCTCGCGCTTTTTCCGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCGCCAGCCAGCGCGGGCTATTTGGCAGGAAGACCACCAGAATAATCAGCAGGACTGCTGGTAAAGCAAGAACCCCCAACATTGCGCGCCAGTTACCGCTATAACTGAACGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATGCTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATATAGAGGAGCGGTGTAAGACGCGATCCCAACAGCAATGCCCAACACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATCGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTACGCCCCAGGCGGAACGACAGCCACCCATTAAACAGCGCACCAATTGCTGCGCCGAGCATCATGCTACTGACCACCCATTCCTGCAAACGGCTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAGAGGACGTGGCGTTAAAGCAGATTCCGTATTGATAGTAACCAT > 500 B21_04104 NA YjhB_MFS_transporter CAQ34621.1 11 MATAWYKQVNPPQRKALFSAWLGYVFDGFDFMMIFYILHIIKADLGITDIQATLIGTVAFIARPIGGGFFGAMADKYGRKPMMMWAIFIYSVGTGLSGIATNLYMLAVCRFIVGLGMSGEYACASTYAVESWPKNLQSKASAFLVSGFSVGNIIAAQIIPQFAEVYGWRNSFFIGLLPVLLVLWIRKSAPESQEWIEDKYKDKSTFLSVFRKPHLSISMIVFLVCFCLFGANWPINGLLPSYLADNGVNTVVISTLMTIAGLGTLTGTIFFGFVGDKIGVKKAFVVGLITSFIFLCPLFFISVKNSSLIGLCLFGLMFTNLGIAGLVPKFIYDYFPTKLRGLGTGLIYNLGATGGMAAPVLATYISGYYGLGVSLFIVTVAFSALLILLVGFDIPGKIYKLSVAK gamma_subgroup Escherichia_coli_BL21(DE3) Escherichia_coli_BL21(DE3) AM946981 4414309..4415526 Krempl,P.M.,_Mairhofer,J.,_Eisenkolb,M.,_Specht,T.,_Leparc,G.G.,_Kreil,D.P.,_Bayer,K._and_Striedner,G. NA 0:1218 On_Dec_9,_2010_this_sequence_version_replaced_gi:242375837. NA 09-DEC-2010 Escherichia_coli_BL21(DE3),_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_C5W5W6_ECOBB.gb Escherichia_Castellani_and_Chalmers_1919 313848522 Unpublished NA AM946981 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1218 NA genomic_DNA NA BL21(DE3) NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 469008 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Sequencing_and_gene_expression_analysis_of_Escherichia_coli_BL21(DE3) NA AM946981.2 ATGGCAACAGCATGGTATAAACAAGTTAATCCACCACAACGGAAAGCTCTTTTTTCCGCATGGCTTGGATATGTATTTGATGGCTTTGATTTTATGATGATATTTTACATTCTTCATATTATAAAAGCAGATCTTGGCATTACGGATATTCAGGCTACTTTAATAGGGACAGTGGCCTTCATAGCCAGACCTATTGGAGGTGGTTTTTTTGGTGCCATGGCTGATAAATATGGTCGTAAGCCAATGATGATGTGGGCAATTTTCATTTACTCAGTCGGAACAGGCCTTAGCGGTATTGCTACAAACTTATATATGCTCGCAGTTTGCCGTTTTATTGTTGGCTTAGGGATGTCTGGTGAATATGCATGTGCTTCAACTTATGCGGTAGAAAGTTGGCCTAAAAATCTTCAATCTAAAGCTAGTGCTTTTTTGGTAAGTGGTTTTTCTGTTGGAAATATTATTGCGGCACAAATAATCCCTCAGTTTGCTGAAGTATATGGATGGAGAAACTCTTTTTTTATAGGCCTGTTACCAGTTTTACTAGTTCTTTGGATCAGAAAAAGTGCTCCAGAAAGTCAGGAGTGGATTGAAGATAAATATAAGGATAAATCAACATTTTTGTCTGTCTTCAGAAAACCACATCTTTCAATCTCTATGATCGTTTTCCTCGTCTGTTTTTGTCTATTTGGTGCAAACTGGCCGATAAACGGACTACTTCCTTCCTACCTGGCAGATAATGGAGTTAATACAGTGGTCATTTCAACTCTGATGACAATAGCAGGTTTAGGAACACTGACAGGTACAATATTTTTTGGTTTTGTTGGTGATAAGATTGGTGTAAAAAAAGCCTTTGTAGTCGGTCTAATAACTTCATTTATTTTCCTTTGTCCTCTTTTTTTTATTTCTGTGAAAAACTCTTCTCTTATAGGATTATGTCTCTTTGGATTAATGTTTACAAATTTAGGTATTGCAGGGTTGGTTCCAAAATTTATATATGATTACTTTCCAACAAAATTAAGAGGATTAGGGACCGGTCTTATTTATAACTTAGGGGCAACTGGAGGAATGGCCGCACCTGTATTAGCTACATACATTTCAGGATATTATGGCTTAGGTGTTTCATTATTCATTGTTACGGTTGCATTCTCTGCCTTATTAATTTTGTTAGTTGGTTTTGATATTCCAGGTAAAATTTATAAACTATCCGTGGCTAAATGA > 501 ECD_01893 similar_to_b1981 shikimate_transporter ACT43746.1 11 MDSTLISTRPDEGTLSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLGALWVRNGMEESAEFEQQQHYQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGTLIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALITYFAGNWHSVAIYLLAGCLISAMTALLMKDSQRA gamma_subgroup Escherichia_coli_BL21(DE3) Escherichia_coli_BL21(DE3) CP001509 1958790..1960106 Jeong,H.,_Barbe,V.,_Lee,C.H.,_Vallenet,D.,_Yu,D.S.,_Choi,S.H.,_Couloux,A.,_Lee,S.W.,_Yoon,S.H.,_Cattolico,L.,_Hur,C.G.,_Park,H.S.,_Segurens,B.,_Kim,S.C.,_Oh,T.K.,_Lenski,R.E.,_Studier,F.W.,_Daegelen,P._and_Kim,J.F. NA 0:1317 On_May_17,_2010_this_sequence_version_replaced_gi:291220687.Bacteria_available_from_F._William_Studier_(studier@bnl.gov). NA 21-NOV-2011 Escherichia_coli_BL21(DE3),_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_C6EB88_ECOBD.gb Escherichia_Castellani_and_Chalmers_1919 296142109 J._Mol._Biol._394_(4),_644-652_(2009) NA CP001509 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19786035 1317 NA genomic_DNA NA BL21(DE3) NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 469008 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Genome_sequences_of_Escherichia_coli_B_strains_REL606_and_BL21(DE3) NA CP001509.3 ATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGCTTCGCTGGTGCCGTCGTCGACTGGTATGATTTTTTACTCTATGGCATCACCGCCGCACTGGTGTTTAATCGCGAGTTTTTCCCGCAAGTAAGCCCGGCGATGGGAACGCTCGCCGCATTTGCTACCTTTGGCGTCGGATTTCTTTTCCGTCCGCTCGGCGGTGTCATTTTCGGTCACTTTGGCGACCGACTGGGACGTAAGCGCATGTTAATGCTGACCGTCTGGATGATGGGCATCGCGACAGCCTTGATTGGTATTCTTCCTTCATTCTCGACCATTGGGTGGTGGGCACCTATTTTGCTGGTGACACTGCGTGCCATTCAGGGATTTGCAGTCGGCGGCGAATGGGGAGGCGCGGCGTTGCTTTCCGTTGAAAGTGCACCGAAAAATAAAAAAGCCTTTTACAGTAGCGGTGTACAAGTTGGCTACGGTGTAGGTTTACTGCTTTCAACCGGACTGGTTTCATTGATCAGTATGATGACGACTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCGTACTGGTACTGGGAGCATTGTGGGTGCGCAATGGCATGGAGGAGTCCGCGGAATTTGAACAACAGCAACATTATCAAGCTGCCGCGAAAAAACGCATCCCGGTTATCGAAGCGCTGTTACGACATCCCGGTGCTTTCCTGAAGATTATTGCGCTACGACTGTGCGAATTGCTGACGATGTACATCGTTACTGCCTTTGCACTTAATTATTCAACCCAGAATATGGGGCTACCGCGCGAACTTTTCCTTAATATTGGTTTGCTGGTAGGTGGATTAAGCTGCCTGACAATTCCCTGTTTTGCCTGGCTTGCCGATCGTTTTGGTCGCCGTAGGGTTTATATCACAGGTACGTTAATCGGAACGTTGAGCGCATTTCCTTTCTTTATGGCGCTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTGCGCATGACATGGTGGTGTGTGTGCAACAACCGATGTTTACCGAAATGTTTGGTGCCAGTTATCGCTATAGTGGCGCTGGAGTCGGTTATCAGGTTGCCAGTGTGGTTGGCGGTGGATTTACACCTTTTATTGCCGCTGCACTCATCACTTACTTTGCCGGGAACTGGCATAGCGTCGCCATTTATTTGCTGGCTGGATGCCTGATTTCCGCAATGACCGCTTTGTTGATGAAAGACAGTCAACGCGCTTGA > 502 ECD_03084 similar_to_b3224 sialic_acid_transporter ACT44888.1 11 MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLACGFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILYRGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNDLVKTKS gamma_subgroup Escherichia_coli_BL21(DE3) Escherichia_coli_BL21(DE3) CP001509 3232247..3233737 Jeong,H.,_Barbe,V.,_Lee,C.H.,_Vallenet,D.,_Yu,D.S.,_Choi,S.H.,_Couloux,A.,_Lee,S.W.,_Yoon,S.H.,_Cattolico,L.,_Hur,C.G.,_Park,H.S.,_Segurens,B.,_Kim,S.C.,_Oh,T.K.,_Lenski,R.E.,_Studier,F.W.,_Daegelen,P._and_Kim,J.F. NA 0:1491 On_May_17,_2010_this_sequence_version_replaced_gi:291220687.Bacteria_available_from_F._William_Studier_(studier@bnl.gov). NA 21-NOV-2011 Escherichia_coli_BL21(DE3),_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_C6EH08_ECOBD.gb Escherichia_Castellani_and_Chalmers_1919 296142109 J._Mol._Biol._394_(4),_644-652_(2009) NA CP001509 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19786035 1491 NA genomic_DNA NA BL21(DE3) NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 469008 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Genome_sequences_of_Escherichia_coli_B_strains_REL606_and_BL21(DE3) NA CP001509.3 TTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTGAATGGTTTACCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAACCAACGCTGAACGCGAGAAGGCATATCCAGCCCAATCAGCAGGATCACCACGAACGTCAGACTGAACGAGAGCGATGCCAGCGCAGTACCCAGATCCAGACGTTGAGCGATCAACGCGCCGATGATTGGGGCCAGTGCACCGCCCAATGCGCCAACGTTGTAGGTAAAGCCCAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTTGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCAATCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAGTATGCGGGTTATAAGCCAGATCGGTTTTCAGATACGTTGGCAGCAGCGCCTGAATCGGCCATGAGTAGAGGAAAGCAAACAACACGACCACCATCAGCATTACGCCCGTTGGCCAGCGTTTGCCTGTACTCTGCACCATAAAGCTGATAAAGATTGCGGCGCATAACAGCCCAAGAACAGCGACGATCGCGGCATTTTGCAGGTTACCGGCGAAGCAGAACCACAGCGCAGTAGCCGCCGCCAGTGTCATTACGATATTGGCAATGCGATGTTCACCACGGTAGAGAATATCCACCATTGTGCGTACTGGTGCTTTACCTGCGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATTGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCGGAACCACCAGGCTATAGACCTGAGCGGCAACGACGGCCCCCACAGAGAAGCCTGAAATCAAAAAACCACTGGCTTTGTTACGCAGATGTTTTGGCCAGCTTTCAATGACATAGGTGGCGCTGGAACCGTATTCACCCGCCATCCCCATGCCGATGACCAGACGAGCGATAAACATGGTGATGTAGCCTGGCGCAAAGCCGCAGGCCAGCGTCCCGGCCGAGAAGAGAACGATGCTGGTGACCATTGCCAGACGACGCCCGTAGCGGTCACCCATAGCGCCGAGCATCAGGCCGCCGAACCAGCGAGAGATAAAGGCTGCAGAGATCAGACTTGCCGCCTGCACCGTCGTCAGCCCGAATTCACCCTGTACTTCGGTGAGTACCAGGGCGATTAAAACGAAATCAAAACCGTCAAGCAGATATCCCAACCAGGCAGCGGAAAATGCGCGCCATTGTGCACGGTTGAGATGGCGATACCACGGGATATTCTGGGTTGTAGTACTCAT > 503 ECSP_3534 NA alpha-ketoglutarate_transporter YP_003079376.1 11 MAESTVTADSKLTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQHTMEDSALREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAIFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMRL gamma_subgroup Escherichia_coli_O157:H7_str._TW14359 Escherichia_coli_O157:H7_str._TW14359 NC_013008 3503633..3504931 Kulasekara,B.R.,_Jacobs,M.,_Zhou,Y.,_Wu,Z.,_Sims,E.,_Saenphimmachak,C.,_Rohmer,L.,_Ritchie,J.M.,_Radey,M.,_McKevitt,M.,_Freeman,T.L.,_Hayden,H.,_Haugen,E.,_Gillett,W.,_Fong,C.,_Chang,J.,_Beskhlebnaya,V.,_Waldor,M.K.,_Samadpour,M.,_Whittam,T.S.,_Kaul,R.,_Brittnacher,M._and_Miller,S.I. NA 0:1299 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001368.Source_DNA_is_available_from_Samuel_I._Miller,_University_ofWashington,_E-mail:_millersi@u.washington.edu.COMPLETENESS:_full_length. NA 20-NOV-2011 Escherichia_coli_O157:H7_str._TW14359_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_C6UQZ4_ECO5T.gb Escherichia_Castellani_and_Chalmers_1919 254791136 Infect._Immun._77_(9),_3713-3721_(2009) NA NC_013008 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19564389 1299 NA genomic_DNA NA TW14359 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 544404 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Analysis_of_the_genome_of_the_Escherichia_coli_O157:H7_2006_spinach-associated_outbreak_isolate_indicates_candidate_genes_that_may_enhance_virulence NA NC_013008.1 CTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAGGCTGTTTCCATTCCTATTGATTTCAGCGACAACGCTACGTACTCCGCCGAACCACCAAATATAGCATTAGCGACCGCATATGACAGACCAACGCCTAATGCGCGAACCTGTGCCGGGAACATCTCAGCCTTCAGTATTCCACTGATTGATGTATAAAAACTCACTATCAGCAGGGCACACATCACCAGACCAAAAGCGGCATAAGGCGAGGAAACGTTTTGCAATGCTGAGAGAATAGGAACGGTAAAAATGGCTGCCAGCGAACCGAAACATAACATTGAGGTACGGCGACCAATCTTATCCGACAGCGCGCCAATGAGTGGTTGAATAAGCATGAATACAAACAATGCGGCAGTCATAATGCCACTCGCCACGTTGGCATGCATTCCCGCAGTATTTACCAGATACTTCTGCATATAAGTGGTGAAGGTATAGAAACAAAGGGAGCCCGCAGCGGTAAAACCGAGAACCATGATGAATGCACGGCGATTGCGCCATAATCCTTTCAGAGATCCAGCTTCTTTTAAAGCGCGCGTTTCTTGTTGCGAAGTTTCATCTAACTGACGACGTAACCACAACGCCACAACAGCTAACACAGCTCCTAACGCGAAAGGAATACGCCATCCCCACTCTCTGAGTGCAGAGTCTTCCATGGTGTGTTGTAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACGGATAATCCCTGAAATAAACGCGCGAGAAGCAATAATGCCGGAGCCCACGTACCGATTGTTTCATAACCAGGCAAACAGGCGATTACCAGTGAGCCGAAACACATCATACACACCGATAGCAGCATCGATTTTTTGCGACCATGTTTATCGGCTATGCGGCCAAATAGCCAACCGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGTGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCAT > 504 ECSP_5109 xylose/proton_symporter;_member_of_the_major_facilitator_superfamily_(MFS)_of_transporter D-xylose_transporter_XylE YP_003080870.1 11 MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQTATL gamma_subgroup Escherichia_coli_O157:H7_str._TW14359 Escherichia_coli_O157:H7_str._TW14359 NC_013008 5114467..5115942 Kulasekara,B.R.,_Jacobs,M.,_Zhou,Y.,_Wu,Z.,_Sims,E.,_Saenphimmachak,C.,_Rohmer,L.,_Ritchie,J.M.,_Radey,M.,_McKevitt,M.,_Freeman,T.L.,_Hayden,H.,_Haugen,E.,_Gillett,W.,_Fong,C.,_Chang,J.,_Beskhlebnaya,V.,_Waldor,M.K.,_Samadpour,M.,_Whittam,T.S.,_Kaul,R.,_Brittnacher,M._and_Miller,S.I. NA 0:1476 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001368.Source_DNA_is_available_from_Samuel_I._Miller,_University_ofWashington,_E-mail:_millersi@u.washington.edu.COMPLETENESS:_full_length. NA 20-NOV-2011 Escherichia_coli_O157:H7_str._TW14359_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_C6V1Z3_ECO5T.gb Escherichia_Castellani_and_Chalmers_1919 254791136 Infect._Immun._77_(9),_3713-3721_(2009) NA NC_013008 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19564389 1476 NA genomic_DNA NA TW14359 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 544404 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Analysis_of_the_genome_of_the_Escherichia_coli_O157:H7_2006_spinach-associated_outbreak_isolate_indicates_candidate_genes_that_may_enhance_virulence NA NC_013008.1 TTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGGGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCCACATAAACAGTGCTGCCAGAACGCCCATACAACCGTAAATCCAGTAGGAGAAACCGTTGTGGAAATGGGCCACCAGCCAGGAGTTTTTGTCCATCATCGGGAAGGTCCAGGAGACGAAGTAGTTCGCCAGCCACTGGGCCGCCACCGCGATTGCCAGCGCTTTACCTCGAATAGCATTCGGGAAGATTTCCGACAGCAGTACCCAGCATACCGGACCCCAGGACATGGCAAAGGCGGCAACATAGAACAGCATCGACAGTAGCGCCACAATACCCGGTGCCTGAGTGTAAAACGCGGTACCGAGGCTAAACATACCGATTGCCATTCCGAGTGCGCCGATAATTTGCAGTGGCTTACGACCAAATTTATCCACCGTCATAATTGCCAGAACGGTGAAGGTGAGGTTGATAACTCCGACAATAATGGTCTGCAACAGCGCGATATCCGTGCTGGCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATAACGCCGATGACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGTTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGTGACATCAGCCAGCGAGGACTTTCTGGCACGGTATACAGCAGCATTAAGAACAGCAGTGCAGGGATACATTCCGAGGCAAACATATAACGCCAGCCGTCAGTATTCAGCCAGCTGGCATCACCGGAACGCGCAATAAAATAGTTTACGCAGTAAACTAAAAGCTGCCCGAAAATAATCGCAAACTGGTTAAATGAAACCAGTTTCCCGCGAATATGAGCAGGAGCAAGTTCCGCAATATACATTGGTGAAAGCATTGAGGCTAAACCAACGCCAATACCGCCAATAATACGATAAATAACAAATTCCGGGACATAACCTGCCAGATAAACAGGCACTGTGTTGTCCGGGTTTATAGAGGTAAAACCAAGTTCTGGCCAGGCAGAACCTACACCAGAAATAAAAAACAGGACAGCAGCAATCTTAAGTGAATCACGACGACCGAAGCGGTTACTGCAATAACCACCGAGGGCACCGCCGATGATGCAACCAATCAGAGCGCTGGCCACGCAAAACCCTAACAGGGAGTTGGCAGCGGATTCACTTAAGTTTTGTGGAGCAACAAAGACGGTATTGAGTGACTCAACAGTACCGGAAATAACGGCGGTGTCGTAGCCAAATAATAAACCACCTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCAT > 505 ECO103_4251 NA transporter YP_003224090.1 11 MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATAAVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLLTMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRALYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVSLHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFSTAAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIILFALFAFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVASILGASVAPYIAAWLQANYGLGAVGLYLAAMAGLTLIALLLTHETRHQSL gamma_subgroup Escherichia_coli_O103:H2_str._12009 Escherichia_coli_O103:H2_str._12009 NC_013353 4341997..4343319 Ogura,Y.,_Ooka,T.,_Iguchi,A.,_Toh,H.,_Asadulghani,M.,_Oshima,K.,_Kodama,T.,_Abe,H.,_Nakayama,K.,_Kurokawa,K.,_Tobe,T.,_Hattori,M._and_Hayashi,T. NA 0:1323 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_AP010958.COMPLETENESS:_full_length. NA 26-JAN-2012 Escherichia_coli_O103:H2_str._12009,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_C8TYE4_ECO10.gb Escherichia_Castellani_and_Chalmers_1919 260842239 Proc._Natl._Acad._Sci._U.S.A._106_(42),_17939-17944_(2009) NA NC_013353 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19815525 1323 NA genomic_DNA 585395 12009 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 585395 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Comparative_genomics_reveal_the_mechanism_of_the_parallel_evolution_of_O157_and_non-O157_enterohemorrhagic_Escherichia_coli NA NC_013353.1 ATGCAAGCAACAGCCACAACACTCGACCACGAGCAAGAATACACGCCGATCAACTCGCGTAATAAAGTCCTTGTCGCCTCTCTCATTGGCACGGCCATTGAGTTCTTCGACTTTTACATTTACGCCACTGCGGCCGTTATTGTGTTTCCGCATATCTTCTTCCCGCAGGGCGATCCAACGGCAGCAACGCTACAGTCGCTCGCCACCTTCGCCATCGCCTTCGTCGCGCGCCCCATTGGCTCTGCCGTTTTTGGTCATTTTGGCGATCGCGTTGGGCGTAAAGCGACGCTGGTCGCCTCGTTGCTAACGATGGGGATTTCGACCGTGGTGATTGGTCTGCTGCCGGGCTATGCCACGATTGGTATTTTCGCCCCGCTGCTGCTGGCGCTGGCTCGATTTGGTCAGGGTCTGGGCTTAGGCGGTGAATGGGGCGGCGCGGCGCTGCTGGCGACTGAAAACGCCCCACCGCGCAAACGTGCACTGTATGGCTCCTTCCCACAGCTGGGCGCACCGATTGGCTTCTTCTTTGCCAACGGCACTTTCTTGCTGCTTTCCTGGCTACTGACCGACGAGCAGTTTATGAGCTGGGGCTGGCGTGTGCCATTTATCTTCTCGGCGGTGCTGGTCATTATCGGCCTGTATGTTCGCGTGTCGCTGCATGAGTCGCCGGTGTTTGAGAAAGTCGCTAAAGCGAAAAAACAGGTGAAGATCCCGCTGGGTACGCTGCTGACCAAACATGTTCGCGTAACCGTACTGGGTACGTTCATTATGCTGGCAACCTATACGCTGTTTTACATCATGACGGTCTACTCTATGACCTTTAGTACCGCCGCCGCGCCAGTTGGGCTTGGCCTGCCGCGTAACGAAGTGTTGTGGATGCTGATGATGGCAGTTATTGGTTTTGGCGTGATGGTGCCAGTCGCCGGATTACTGGCAGATGCCTTTGGTCGCCGTAAAAGTATGGTAATTATCACCACGCTGATCATCCTGTTCGCGCTGTTCGCCTTTAACCCGCTGCTTGGTTCTGGCAACCCGATTCTGGTTTTTGCCTTCCTGCTGCTGGGGTTAAGTCTGATGGGGCTGACCTTCGGGCCGATGGGCGCGCTGTTACCAGAGCTGTTCCCAACAGAAGTGCGTTACACCGGAGCATCGTTCTCTTACAACGTAGCGTCGATTCTCGGGGCTTCCGTTGCACCATATATCGCAGCCTGGTTGCAGGCTAACTACGGGTTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAA > 506 ECDH1ME8569_3402 NA inner_membrane_metabolite_transport_protein_yhjE BAJ45258.1 11 MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATAAVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLLTMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRALYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVSLHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFSTAAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIILFALFAFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVASILGASVAPYIAAWLQTNYGLGAVGLYLAAMAGLTLIALLLTHETRHQSL gamma_subgroup Escherichia_coli_DH1 Escherichia_coli_DH1 AP012030 3652692..3654014 Suzuki,S.,_Ono,N.,_Furusawa,C.,_Ying,B.W._and_Yomo,T. NA 0:1323 NA NA 21-JUN-2011 Escherichia_coli_DH1_(ME8569)_DNA,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_C9QVM4_ECOD1.gb Escherichia_Castellani_and_Chalmers_1919 315134697 PLoS_ONE_6_(5),_E19534_(2011) NA AP012030 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21611185 1323 NA genomic_DNA NA DH1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 536056 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Comparison_of_sequence_reads_obtained_from_three_next-generation_sequencing_platforms NA AP012030.1 ATGCAAGCAACAGCCACAACACTCGACCACGAGCAAGAATACACGCCGATCAACTCGCGTAATAAAGTCCTTGTCGCCTCTCTCATTGGCACAGCCATTGAGTTCTTCGACTTTTACATTTACGCCACTGCGGCCGTTATTGTGTTTCCGCATATCTTCTTCCCGCAGGGCGATCCTACGGCAGCAACGCTACAGTCGCTCGCCACCTTCGCCATCGCCTTCGTCGCGCGCCCCATTGGCTCTGCCGTTTTTGGTCATTTTGGCGATCGCGTTGGGCGTAAAGCGACGCTGGTCGCCTCGTTGCTAACGATGGGGATTTCGACCGTGGTGATTGGTCTGCTGCCGGGCTATGCCACGATTGGTATTTTCGCCCCGCTGCTGCTGGCGCTGGCTCGATTTGGTCAGGGTCTGGGCTTAGGCGGTGAATGGGGCGGCGCGGCGCTGCTGGCGACTGAAAACGCCCCACCGCGCAAACGTGCACTGTATGGCTCCTTTCCGCAGCTGGGCGCACCGATTGGCTTCTTCTTTGCCAATGGCACTTTCTTGCTGCTTTCCTGGCTACTGACCGACGAGCAGTTTATGAGCTGGGGCTGGCGTGTGCCATTTATCTTCTCGGCGGTGCTGGTCATTATCGGCCTGTATGTTCGCGTGTCGCTGCATGAGTCGCCGGTGTTTGAGAAAGTCGCTAAAGCGAAAAAACAGGTGAAGATCCCGCTGGGTACGCTGCTGACCAAACATGTTCGCGTAACCGTACTGGGTACGTTCATTATGCTGGCAACCTATACGCTGTTTTACATCATGACGGTCTACTCTATGACCTTTAGTACCGCCGCCGCGCCAGTTGGGCTTGGCCTGCCGCGTAACGAAGTGTTGTGGATGTTGATGATGGCAGTTATTGGTTTTGGCGTGATGGTGCCAGTCGCTGGATTACTGGCTGATGCCTTTGGTCGCCGTAAAAGCATGGTAATCATCACCACGCTGATCATCCTGTTCGCGCTGTTCGCCTTTAACCCACTGCTCGGTTCTGGCAACCCGATTCTGGTTTTTGCCTTCCTGCTGCTGGGGTTAAGTCTGATGGGTCTGACCTTCGGGCCAATGGGTGCGCTGTTACCAGAGCTGTTTCCGACAGAAGTGCGTTACACCGGAGCATCGTTCTCTTACAACGTAGCGTCGATTCTCGGGGCTTCCGTTGCGCCATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAA > 507 ECSF_3351 NA putative_transport_protein BAI56891.1 11 MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATAAVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLLTMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRALYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVSLHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFSTAAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIILFALFAFTPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSILGASVAPYIAAWLQTNYGLGAVGLYLAAMAGLTLIALLLTHETRHQSL gamma_subgroup Escherichia_coli_SE15 Escherichia_coli_SE15 AP009378 3629367..3630689 Toh,H.,_Oshima,K.,_Toyoda,A.,_Ogura,Y.,_Ooka,T.,_Sasamoto,H.,_Park,S.H.,_Iyoda,S.,_Kurokawa,K.,_Morita,H.,_Itoh,K.,_Taylor,T.D.,_Hayashi,T._and_Hattori,M. NA 0:1323 This_work_was_done_in_collaboration_with_Yoshitoshi_Ogura_andTetsuya_Hayashi_(University_of_Miyazaki),_Sang-Hee_Park_and_KikujiItoh_(University_of_Tokyo),_and_Hidetoshi_Morita_(AzabuUniversity). NA 02-FEB-2010 Escherichia_coli_SE15_DNA,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D2NCB6_ECOS5.gb Escherichia_Castellani_and_Chalmers_1919 281177210 J._Bacteriol._192_(4),_1165-1166_(2010) NA AP009378 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20008064 1323 NA genomic_DNA NA SE15 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 431946 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Complete_genome_sequence_of_the_wild-type_commensal_Escherichia_coli_strain_SE15,_belonging_to_phylogenetic_group_B2 NA AP009378.1 ATGCAAGCAACAGCCACAACACTCGACCACGAGCAAGAATACACGCCGATCAACTCGCGTAATAAAGTCCTTGTCGCCTCTCTCATTGGCACGGCCATTGAGTTCTTCGACTTTTACATTTACGCCACTGCGGCCGTTATTGTGTTTCCGCATATCTTCTTCCCGCAGGGCGATCCAACGGCAGCAACGCTACAGTCGCTCGCCACCTTCGCCATCGCCTTCGTCGCGCGCCCCATTGGCTCTGCCGTTTTTGGTCATTTTGGCGATCGCGTTGGGCGTAAAGCGACGCTGGTCGCCTCGTTGCTAACGATGGGGATTTCGACCGTGGTGATTGGTCTGCTGCCAGGCTATGCCACGATTGGTATTTTCGCCCCGCTGCTGCTGGCGCTGGCTCGATTTGGTCAGGGTCTGGGCTTAGGTGGTGAATGGGGCGGCGCGGCGCTGCTGGCGACTGAAAACGCCCCACCGCGCAAACGTGCATTGTACGGCTCCTTCCCGCAGCTGGGCGCACCGATTGGCTTCTTCTTTGCCAACGGCACTTTCTTGCTGCTTTCCTGGCTACTGACCGACGAGCAGTTTATGAGCTGGGGCTGGCGTGTGCCATTTATCTTCTCGGCGGTGCTGGTCATTATCGGCCTGTATGTTCGCGTGTCGCTGCATGAGTCGCCGGTGTTTGAGAAAGTCGCTAAAGCGAAAAAACAGGTGAAGATCCCGCTGGGTACGCTGCTGACCAAACATGTTCGCGTAACCGTACTGGGTACGTTCATTATGCTGGCAACCTATACGCTGTTTTACATCATGACGGTCTACTCTATGACCTTTAGTACCGCCGCCGCGCCAGTTGGGCTTGGCCTGCCGCGTAACGAAGTGTTGTGGATGCTGATGATGGCAGTTATTGGTTTTGGCGTGATGGTGCCAGTCGCCGGATTACTGGCTGATGCCTTTGGTCGCCGTAAAAGCATGGTGATCATCACCACGCTGATCATCCTGTTCGCGCTATTCGCCTTTACCCCTTTGCTCGGTTCTGGCAACCCGATTCTGGTTTTTGCCTTTCTGCTGCTGGGGTTAAGTCTGATGGGGCTGACCTTCGGTCCGATGGGCGCGCTGTTACCAGAGCTGTTCCCGACAGAAGTGCGTTACACCGGAGCATCGTTCTCTTACAACGTATCGTCGATTCTCGGGGCTTCCGTTGCGCCGTATATCGCAGCCTGGTTGCAGACTAACTACGGGTTAGGTGCGGTGGGGCTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAA > 508 ECSF_1630 NA putative_transport_protein BAI55170.1 11 MEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVVLAKLVSNGWSNNFLNAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFLLGGIGILLAWFLSGKYFIESPRWLAGKGRIAGAESQLREVEQQIEREKSIRLPPLTLNQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWMPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSALLIIIAVLGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFMVLGVMLVLCALVLSIFGIETRKVSLEEISEVN gamma_subgroup Escherichia_coli_SE15 Escherichia_coli_SE15 AP009378 1746602..1747960 Toh,H.,_Oshima,K.,_Toyoda,A.,_Ogura,Y.,_Ooka,T.,_Sasamoto,H.,_Park,S.H.,_Iyoda,S.,_Kurokawa,K.,_Morita,H.,_Itoh,K.,_Taylor,T.D.,_Hayashi,T._and_Hattori,M. NA 0:1359 This_work_was_done_in_collaboration_with_Yoshitoshi_Ogura_andTetsuya_Hayashi_(University_of_Miyazaki),_Sang-Hee_Park_and_KikujiItoh_(University_of_Tokyo),_and_Hidetoshi_Morita_(AzabuUniversity). NA 02-FEB-2010 Escherichia_coli_SE15_DNA,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D2NJ46_ECOS5.gb Escherichia_Castellani_and_Chalmers_1919 281177210 J._Bacteriol._192_(4),_1165-1166_(2010) NA AP009378 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20008064 1359 NA genomic_DNA NA SE15 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 431946 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Complete_genome_sequence_of_the_wild-type_commensal_Escherichia_coli_strain_SE15,_belonging_to_phylogenetic_group_B2 NA AP009378.1 TTAATTCACCTCAGAAATCTCTTCCAGCGACACCTTCCGCGTTTCGATGCCAAAAATGGAGAGAACCAGCGCACAGAGCACTAACATGACACCAAGCACCATAAACACCGTGATCGACCCATAATGTGTTAATAATGCCGCAACGCCATAGGGCGTGAAGACTGCGACGATCCGTCCTACGGCATTAACGAAACCCGAACCACGCAGGCGTAAATGCGTTGGCCAAAGTTCCGGGATATAAACCGCCGACGCGAAGCAAACATACATGTATAAAAAGAAGATCATCACCAGGCCATAGATTAAAATCGCCCACTCTGTTGTCTGAATTGAATAGATATAGCCTAACACGGCAATAATAATAAGTAAGGCGGAACCAAATAATCGACGAGGGAAATGATCAATAATTAATGCCGCAATAAATATCCCTACCGGAGCGCCAATCATAATAACAGCGGTCATTAATATTGATTTATCGACATCAATGCCGGAGTTAACAAATATGGTCGGCATCCATACGGTGATGGTATAAAGCGAAATGTTCATTGCAATTAAAACAGTAATCGCGACTAATGTACGTCGTAACATTTCCCCTTTAAACAGGAGCCAGAAGGTACCCTTGATTACCTTAACCTTGCTGTTGCTCTGGTTCAAAGTAAGCGGGGGTAAACGAATACTCTTCTCTCTTTCAATTTGCTGCTCTACTTCACGAAGTTGGCTTTCTGCACCTGCGATTCGCCCTTTCCCTGCCAACCATCGTGGCGACTCAATAAAGTATTTACCTGAGAGAAACCAGGCTAACAGTATGCCAATACCGCCCAGCAGAAACATTATCCGCCAACTAAAAAAAGCGATAACCACCACGCCTATCGCCGCAGACAGCATGGGCGACCAGTTTCCAACAAATGAGAGCCGCGCGGACCATTTTCCACGCACCGTCGCGGGGATAAACTCCGTAAATGAGGCATAGCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCCGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCGGTAAGAGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGCTTACCAGCTTTGCTAAGACGACATTACCGGAGTAACTCAAAAACCCCGTTAATAACAGACTAAAGCTTATTATACCAAATATACGATAATGAAACCGGGCCAAAGGCAAGCGGTCCAGTCTTGCGCCAATTTGATCATATTGTTCCAT > 509 EC042_4477 NA proline/betaine_transporter CBG37299.1 11 MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVVGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYDNIEQKIDDIDHEIADLQAKRTRLVQQHPRIDE gamma_subgroup Escherichia_coli_042 Escherichia_coli_042 FN554766 4801242..4802744 Chaudhuri,R.R.,_Sebaihia,M.,_Hobman,J.L.,_Webber,M.A.,_Leyton,D.L.,_Goldberg,M.D.,_Cunningham,A.F.,_Scott-Tucker,A.,_Ferguson,P.R.,_Thomas,C.M.,_Frankel,G.,_Tang,C.M.,_Dudley,E.G.,_Roberts,I.S.,_Rasko,D.A.,_Pallen,M.J.,_Parkhill,J.,_Nataro,J.P.,_Thomson,N.R._and_Henderson,I.R. NA 0:1503 NA NA 28-JAN-2010 Escherichia_coli_042_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D3GTZ0_ECO44.gb Escherichia_Castellani_and_Chalmers_1919 284919779 PLoS_ONE_5_(1),_E8801_(2010) NA FN554766 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20098708 1503 NA genomic_DNA NA 042 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 216592 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Complete_genome_sequence_and_comparative_metabolic_profiling_of_the_prototypical_enteroaggregative_Escherichia_coli_strain_042 NA FN554766.1 ATGCTGAAAAGGAAAAAAGTAAAACCAATTACCCTTCGTGATGTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTTGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGGGGCTGACCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCACTATTGTGATTATGTCGATCAGTACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTGAATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGATTTATGGGCAGCTGGCTGGACTTCGGTTCTATTGCCGGGTTTGTGCTGGGTGCGGGCGTGGTGGTGTTAATTTCGACCATTGTCGGCGAAGCGAACTTCCTCGACTGGGGCTGGCGTATTCCGTTCTTTATTGCTCTGCCGTTAGGGATTATCGGGCTTTACCTGCGCCATGCGCTGGAAGAGACCCCGGCGTTCCAGCAGCATGTTGATAAACTGGAGCAGGGCGACCGCGAAGGTTTGCAGGATGGCCCGAAAGTCTCGTTTAAAGAGATTGCCACCAAACACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCACGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTGCTTGGTAGTGTTGCACTGTTTGTGTTGGCGATCCCGGCGTTTATTCTGATTAACAGTAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTACGGGCGTTATGGCTTCTACCTTGCCAGCGATGTTCCCGACGCATATCCGATACAGCGCGCTGGCGGCGGCATTTAATATTTCGGTGCTGGTTGCCGGTCTGACGCCAACACTGGCGGCCTGGCTGGTCGAAAGCTCGCAGAATCTGATGATGCCTGCCTATTACCTGATGGTAGTGGCGGTGGTTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACTCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAA > 510 G2583_3170 NA alpha-ketoglutarate_permease YP_003500682.1 11 MAESTVTADSKLTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQHTMEDSALREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAIFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMRL gamma_subgroup Escherichia_coli_O55:H7_str._CB9615 Escherichia_coli_O55:H7_str._CB9615 NC_013941 3227193..3228491 Zhou,Z.,_Li,X.,_Liu,B.,_Beutin,L.,_Xu,J.,_Ren,Y.,_Feng,L.,_Lan,R.,_Reeves,P.R._and_Wang,L. NA 0:1299 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001846.COMPLETENESS:_full_length. NA 13-OCT-2011 Escherichia_coli_O55:H7_str._CB9615_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D3QNV0_ECOCB.gb Escherichia_Castellani_and_Chalmers_1919 291280824 PLoS_ONE_5_(1),_E8700_(2010) NA NC_013941 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20090843 1299 NA genomic_DNA NA CB9615 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 701177 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Derivation_of_Escherichia_coli_O157:H7_from_its_O55:H7_precursor NA NC_013941.1 CTAAAGACGCATCCCCTTCCCTTTGCGATGTAGCATCAAAGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAGGCTGTTTCCATTCCTATTGATTTCAGCGACAACGCTACGTACTCCGCCGAACCACCAAATATAGCATTAGCGACCGCATATGACAGACCAACGCCTAATGCGCGAACCTGTGCCGGGAACATCTCAGCCTTCAGTATTCCACTGATTGATGTATAAAAACTCACTATCAGCAGGGCACACATCACCAGACCAAAAGCGGCATAAGGCGAGGAAACGTTTTGCAATGCTGAGAGAATAGGAACGGTAAAAATGGCTGCCAGCGAACCGAAACATAACATTGAGGTACGGCGACCAATCTTATCCGACAGCGCGCCAATGAGTGGTTGAATAAGCATGAATACAAACAATGCGGCAGTCATAATGCCACTCGCCACGTTGGCATGCATTCCCGCAGTATTTACCAGATACTTCTGCATATAAGTGGTGAAGGTATAGAAACAAAGGGAGCCCGCAGCGGTAAAACCGAGAACCATGATGAATGCACGGCGATTGCGCCATAATCCTTTCAGAGATCCAGCTTCTTTTAAAGCGCGCGTTTCTTGTTGCGAAGTTTCATCTAACTGACGACGTAACCACAACGCCACAACAGCTAACACAGCTCCTAACGCGAAAGGAATACGCCATCCCCACTCTCTGAGTGCAGAGTCTTCCATGGTGTGTTGTAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACGGATAATCCCTGAAATAAACGCGCGAGAAGCAATAATGCCGGAGCCCACGTACCGATTGTTTCATAACCAGGCAAACAGGCGATTACCAGTGAGCCGAAACACATCATACACACCGATAGCAGCATCGATTTTTTGCGACCATGTTTATCGGCTATGCGGCCAAATAGCCAACCGCCTATTGGGCGCATCAGGAATCCCGCAGCAAAAACACCTGCTGTTTGTAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGTGGGCAAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGACCAGATTACCTGAAGAGGCCCCCACAATCGCCCAAATGCGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCAT > 511 G2583_1910 NA inner_membrane_metabolite_transport_protein_ydfJ YP_003499466.1 11 MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSIPGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAA gamma_subgroup Escherichia_coli_O55:H7_str._CB9615 Escherichia_coli_O55:H7_str._CB9615 NC_013941 1961834..1963099 Zhou,Z.,_Li,X.,_Liu,B.,_Beutin,L.,_Xu,J.,_Ren,Y.,_Feng,L.,_Lan,R.,_Reeves,P.R._and_Wang,L. NA 0:1266 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001846.COMPLETENESS:_full_length. NA 13-OCT-2011 Escherichia_coli_O55:H7_str._CB9615_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D3QT93_ECOCB.gb Escherichia_Castellani_and_Chalmers_1919 291280824 PLoS_ONE_5_(1),_E8700_(2010) NA NC_013941 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20090843 1266 NA genomic_DNA NA CB9615 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 701177 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Derivation_of_Escherichia_coli_O157:H7_from_its_O55:H7_precursor NA NC_013941.1 TTACGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCACTTCTGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAACCGGAAGCGATAAGACCACCAATTTCTTTAGAAATAGCCATCCGGGTAAAGCGGTTTTTACAGCCGAACATTTCTGCCATGGTAATGTTTTCCAGAGCAAATAATCCCAGCACCGCACAGTTATGAATCACAATCAGTGCAACCATAATGGTGCTCGGGGCATAGCTTTTATCTACGATGATAGAAAGCATTGGCCATGCCAGCACAATCGCGGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGGGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGTACTAAATAGCCTGCAAGGAAAGTCTGAATTAACCCGGAGTTACCTGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTACCAGCAGGTGCAGGTTTTGCTGTCGGTTGGTTGCTGTCGTTAACCTTCTCAAAGACCGGGCTTTCTTTCAGATTCATACGCAACCAGATAGCAAAGACCATCACGACAACGCTCGCCAGGAACGGTATACGCCATCCCCACGCCAGCAGTTCCTCTTTACTGAGAATGAAGAACATAAAGGCCCAGATTGCCGTTGCGCTCAAGGTTCCGCAGTTAGTTCCCATAGCCACAAATGAGGAGATAATTCCGCGCTTACCTTTTGGCGCATATTCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAATCCCTGAATAATACGCAGCGTCACCAGCAAGATGGGGGCAAAAACACCAATCTGTGCATAGGTCGGTAACACTCCAATTAAGGTGGTACAGATCCCCATCATGGTGATGGTAATAAAGAGCACTTTTTTACGCCCTATTCTGTCGCCCATTTTGCCGAAAATAAATGCTCCGACAATACGCGCCACATAACCTGCACCGTAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCAT > 512 ECOK1_1160 identified_by_similarity_to_SP:P25744;_match_to_protein_family_HMM_PF07690 multidrug_resistance_protein_MdtG ADE91374.1 11 MSPCENDTPINWKRNLIVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGIVFSITFLFSAIASPFWGGLADRKGRKLMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPMAGGLLADSYGLRPVFFITASVLILCFFVTLFCIREKFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNVAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSYVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRRRIPQISN gamma_subgroup Escherichia_coli_IHE3034 Escherichia_coli_IHE3034 CP001969 1202325..1203551 Moriel,D.G.,_Bertoldi,I.,_Spagnuolo,A.,_Marchi,S.,_Rosini,R.,_Nesta,B.,_Pastorello,I.,_Mariani_Corea,V.A.,_Torricelli,G.,_Cartocci,E.,_Savino,S.,_Scarselli,M.,_Dobrindt,U.,_Hacker,J.,_Tettelin,H.,_Wieler,L.H.,_Ewers,C.,_Picard,D.,_Dougan,G.,_Fontana,M.R.,_Rappuoli,R.,_Pizza,M._and_Serino,L. NA 0:1227 Source_DNA_and_bacteria_are_available_from_Dr._Ulrich_Dobrindt,Institut_fur_Molekulare_Infektionsbiologie_Universitat,_WuerzburgJosef-Schneider-Str._2/Bau_D15_97080_Wuerzburg_Germany. NA 21-NOV-2011 Escherichia_coli_IHE3034,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D5D042_ECOKI.gb Escherichia_Castellani_and_Chalmers_1919 294489418 Proc._Natl._Acad._Sci._U.S.A._(2010)_In_press NA CP001969 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1227 NA genomic_DNA NA IHE3034 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 714962 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Identification_of_protective_and_broadly_conserved_vaccine_antigens_from_the_genome_of_Extraintestinal_Pathogenic_Escherichia_coli_(ExPEC) NA CP001969.1 TCAGTTCGATATCTGGGGGATTCGACGACGACGTAGACTGTTCCATGAATAGACTGCGTTGAATAACACTACGCCAGCGGTGACGAGAAATACCGCCCTGAAACCGTAGTTCGCTGAAATCGCTGCTCCCATCAATGGTCCGGTAACGTTGCCAATATCACGAAACGATTGGTTATAGCTGAAGATACGCCCGGCGATCTGGTTGCTCGAGTTGTAAACCAACAGTGTCTGTACGGCGGGGAGTAATGCACCATCGGCGGCACCGAGCAAAAAACGTAAAATCCCAAGTTGTAATGGCGTCTGAACGTAAGACATTGGGATCAACAGCAGTACAGAAAAGATCAGCGCCGTAATCAGGATCTTTTCGGGGCCGATTCGATCGCCAAGTTTGCCGAGTCGTGGTGCACTTAGCAGAGCCGCCACGCCTGGCACCGAGGCGATCATGCCACTGATAAAAGCGACGTTACTGACGTTACCCGCCAGTTCGCGGACATACAGCGTCAGAATGGGGGCAATTGAGCCCGTCGCCACCTGGATGATTAACGTGGTGACAAACAGGCTGAGTACCAGTTTCGGGTTTTTAAGTGATGTCACCACTTCCCGCATATGCAGCATCTCTTTTTTGCTGACCGGCTGGAATTTTTCTCTGATGCAAAACAGGGTGACGAAAAAGCAGAGTATGAGCACACTGGCGGTAATAAAGAATACCGGACGTAAGCCGTAGCTATCGGCGAGCAAACCGCCAGCCATTGGGCCGAGCAACGCGCCGCTAACGCCGCCTGTGGAGAGCGTACCCAGCGCCCAGCCGCTTTTATTACGCGGTACTTGTGTGGCGATAAGAGCATTAGCGTTGGGGACAAATCCGCCAAGTAAACCAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAGAGCAGAGCGTAATAGCATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGGCCGGTAACGCCAAGCTGCTCAACGTAGAGGGGTAAGAAGGGCATTACCAGGCTGAAGGCGGCACCGGTAAGAAAACAGCCTAGCCAGGCGACGATCAGGTTTCGTTTCCAGTTTATAGGGGTGTCATTTTCACAGGGTGACAT > 513 ECFG_00376 NA inner_membrane_metabolite_transporter_ydfJ EFI19632.1 11 MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVRDRDLSALEDAAEDQPRVVTAAQPSRSL gamma_subgroup Escherichia_coli_FVEC1302 Escherichia_coli_FVEC1302 GG774912 404196..405479 Feldgarden,M.,_Gordon,D.M.,_Johnson,J.R.,_Johnston,B.D.,_Young,S.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Henn,M.R.,_Nusbaum,C._and_Birren,B. NA 0:1284 ##Genome-Assembly-Data-START##Genome_Coverage_::_17.69xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 14-JUN-2010 Escherichia_coli_FVEC1302_genomic_scaffold_supercont1.14,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D7JPL6_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 298277757 Unpublished NA GG774912 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1284 NA genomic_DNA NA FVEC1302 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 656379 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_Genome_Sequence_of_Escherichia_coli_FVEC1302 NA GG774912.1 TTACAGACTTCTTGAAGGTTGCGCAGCTGTTACAACACGCGGTTGATCTTCCGCGGCATCTTCCAGTGCACTTAAATCACGGTCTCTCACTTCTGGCATTTTCAGCGCAGAGATTAAACCAATCACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAACCGGAAGCGATAAGACCACCAATTTCTTTAGAAATCGCCATCCGGGTAAAGCGGTTTTTACAGCCGAACATTTCTGCCATGGTAATGTTTTCCAGAGCAAATAATCCCAGCACCGCACAGTTATGAATCACAATCAGTGCAACCATAATGGTGCTCGGGGCATAGCTTTTATCTACGATGATAGAAAGCATTGGCCACGCCAGCACAATCGCAGAGGTATTCATAATAATATACGGGATCCGGCGACCTATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGCACTAAATAGCCTGCAAGGAAAGTCTGAATTAAACCGGAGTTACCAGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTACCAGCAGGTGCAGGTTTTGCTGTCGGTTGGTTGCTGTCGTTAACCTTCTCAAAGACCGGGCTTTCTTTCAGATTCATACGCAACCAGATAGCAAAGACCATCACGACAACGCTCGCCAGGAACGGTATACGCCATCCCCACGCAAGCAGTTCCTCTTTACTGAGAATGAAGAACATAAAGGCCCAGATTGCCGTTGCGCTCAAGGTTCCGCAGTTAGTCCCCATAGCAACAAATGAGGAGATAATTCCGCGCTTACCTTTTGGTGCATATTCCGCCAGCATCGTGCCGGCACCGGAAATTTCCGCGCCTGCCCCCAGCCCCTGAATAATACGCAGCGTCACCAGCAAAATTGGCGCAAACACACCAATTTGTGCATAGGTCGGCAGCACACCAATTAAGGTAGTACAGATCCCCATCATAGTGATGGTAATAAAGAGCACTTTTTTACGCCCGATTCTGTCGCCCATTTTGCCGAAAATAAATGCTCCGACAATACGCGCCACATAACCTGCACCGTAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCAT > 514 ECFG_02329 NA MFS_transporter EFI19224.1 11 MGIAHRGRLTMSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLACGFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILYRGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGRAKNDLVKTKS gamma_subgroup Escherichia_coli_FVEC1302 Escherichia_coli_FVEC1302 GG774914 794885..796405 Feldgarden,M.,_Gordon,D.M.,_Johnson,J.R.,_Johnston,B.D.,_Young,S.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Henn,M.R.,_Nusbaum,C._and_Birren,B. NA 0:1521 ##Genome-Assembly-Data-START##Genome_Coverage_::_17.69xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 14-JUN-2010 Escherichia_coli_FVEC1302_genomic_scaffold_supercont1.16,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D7JU25_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 298276973 Unpublished NA GG774914 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1521 NA genomic_DNA NA FVEC1302 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 656379 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_Genome_Sequence_of_Escherichia_coli_FVEC1302 NA GG774914.1 TTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCGGCCAAATGGCACGGCACCGCTAAATGGTTTGCCGTCGATAGCGTCATGAGTACGCAATGCTTCCGGGCGCAACCAACGCTGAACGCGGGAAGGCATATCCAGACCAATCAGCAGGATCACCACAAATGTCAGACTGAACGAGAGCGATGCCAGCGCAGTACCCAGATCCAGACGTTGAGCGATCAACGCGCCGATGATTGGGGCCAGTGCACCGCCCAATGCGCCGACGTTGTAGGTAAAGCCCAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTCGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCAATCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCGACAGTATGCGGGTTATAAGCCAGATCGGTTTTCAGATACGTTGGCAGCAGCGCCTGAATCGGCCATGAGTAGAGGAAAGCAAACAACACGACCACCATCAGCATTACGCCCGTTGGCCAGCGTTTGCCCGTACTTTGCACCATAAAGCTGATAAAGATTGCGGCGCATAACAGCCCAAGAACAGCGACGATCGCGGCATTTTGCAGGTTACCGGCGAAGCAAAACCACAGCGCAGTAGCCGCCGCCAGTGTCATTACGATATTGGCAATGCGATGTTCACCACGGTAGAGAATATCTACCATCGTGCGTACTGGTGCTTTACCAGCATGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATTGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCGGAACCACCAGGCTATAGACCTGAGCGGCAACGACGGCCCCCACAGAGAAGCCGGAAATCAGAAAACCACTGGCTTTATTACGCAGATGTTTTGGCCAGCTTTCAATGACATAGGTGGCGCTGGAACCGTATTCACCCGCCATCCCCATGCCGATGACCAGACGAGCGATAAACATGGTGATGTAGCCTGGCGCAAAGCCGCAGGCCAGCGTCCCGGCCGAGAAGAGAACGATGCTGGTGACCATTGCCAGACGACGCCCGTAGCGGTCACCCATAGCGCCGAGCATCAGGCCGCCGAACCAGCGAGAGATAAAGGCTGCGGAGATCAGACTTGCCGCCTGCACCGTCGTCAGCCCGAATTCACCTTGTACTTCGGTGAGTACCAGGGCGATTAAAACGAAATCAAAACCGTCAAGCAGATATCCCAACCAGGCAGCGGAAAATGCCCGCCATTGTGCACGATTGAGATGGCGATACCACGGGATATTCTGGGTTGTAGTACTCATTGTGAGTCTCCCGCGGTGGGCGATGCCCAC > 515 HMPREF9552_01546 KEGG:_rcm:A1E_04550_9.4e-18_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_metabolite:H+_symporter_family_protein EFJ74800.1 11 MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATAAVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLLTMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRALYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVSLHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFSTAAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIILFALFAFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVASILGASVAPYIAAWLQTNYGLGAVGLYLAAMAGLTLIALLLTHETRHQSL gamma_subgroup Escherichia_coli_MS_198-1 Escherichia_coli_MS_198-1 ADTJ01000173 8323..9645 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1323 Escherichia_coli_198-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_198-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_57.4xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 08-JUL-2010 Escherichia_coli_MS_198-1_E_coli198-1-1.0_Cont211.5,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D7X4K8_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296492895 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTJ01000173 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1323 NA genomic_DNA NA MS_198-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749549 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTJ01000173.1 TTACAACGATTGATGTCGCGTCTCATGGGTCAGCAGTAGGGCGATTAAGGTCAAGCCAGCCATCGCCGCCAGATATAACCCCACCGCACCTAACCCGTAGTTAGTCTGCAACCAGGCTGCGATATACGGCGCAACGGAAGCCCCGAGAATCGACGCTACGTTGTAAGAGAACGATGCTCCGGTGTAACGCACTTCTGTCGGGAACAGCTCTGGTAACAGCGCGCCCATCGGCCCGAAGGTCAGTCCCATCAGACTTAACCCCAGCAGCAGGAAGGCAAAAACCAGAATCGGGTTGCCAGAACCGAGCAGCGGGTTAAAGGCGAACAGCGCGAACAGGATGATCAGCGTGGTGATGATTACCATGCTTTTACGGCGACCAAAGGCATCAGCCAGTAATCCGGCGACTGGCACCATCACGCCAAAACCAATAACTGCCATCATCAGCATCCACAACACTTCGTTACGCGGCAGGCCAAGCCCAACTGGCGCGGCGGCGGTACTAAAGGTCATAGAGTAGACCGTCATGATGTAAAACAGCGTATAGGTTGCCAGCATGATGAAGGTACCGAGCACCGTGACGCGTACGTGTTTGGTCAGCAGCGTACCCAGCGGGATCTTCACCTGCTTTTTCGCTTTAGCGACTTTCTCAAACACCGGCGACTCATGCAGCGACACGCGAACATACAGGCCGATAATGACCAGCACCGCTGAGAAGATAAATGGCACACGCCAGCCCCAGCTCATAAACTGCTCGTCGGTCAGTAGCCAGGAAAGCAGCAAGAAAGTGCCGTTGGCAAAGAAGAAGCCAATCGGTGCGCCCAGCTGCGGGAAGGAGCCATACAGTGCACGTTTGCGCGGTGGGGCGTTTTCAGTCGCCAGCAGCGCCGCGCCGCCCCATTCACCGCCTAAGCCCAGACCCTGACCAAATCGAGCCAGCGCCAGCAGCAGCGGGGCGAAAATACCAATCGTGGCATAGCCCGGCAGCAGACCAATCACCACGGTCGAAATCCCCATCGTTAGCAACGAGGCGACCAGCGTCGCTTTACGCCCAACGCGATCGCCAAAATGACCAAAAACGGCAGAGCCAATGGGGCGCGCGACGAAGGCGATGGCGAAGGTGGCGAGCGACTGGAGCGTTGCTGCCGTAGGATCGCCCTGTGGGAAGAAGATATGCGGAAACACAATAACGGCCGCAGTGGCGTAAATGTAAAAGTCGAAAAACTCAATGGCCGTGCCAATGAGAGAGGCGACAAGGACTTTATTACGCGAGTTGATCGGCGTGTATTCTTGCTCGTGGTCGAGTGTTGTGGCTGTTGCTTGCAT > 516 HMPREF9552_01744 KEGG:_rcm:A1E_04550_2.3e-22_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_metabolite:H+_symporter_family_protein EFJ74615.1 11 MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKYWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVVGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYDNIEQKIDDIDHEIADLQAKRTRLVQQHPRIDE gamma_subgroup Escherichia_coli_MS_198-1 Escherichia_coli_MS_198-1 ADTJ01000193 26012..27514 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1503 Escherichia_coli_198-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_198-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_57.4xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 08-JUL-2010 Escherichia_coli_MS_198-1_E_coli198-1-1.0_Cont240.4,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D7X556_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296492875 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTJ01000193 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1503 NA genomic_DNA NA MS_198-1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749549 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTJ01000193.1 ATGCTGAAAAGGAAAAAAGTAAAACCAATTACCCTTCGTGATGTCACTATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGGGGCTGACCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGTGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCACTATTGTGATTATGTCGATCAGTACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTGAATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGCTTTATGGGCAGCTGGCTGGACTTCGGTTCTATTGCCGGGTTTGTGCTGGGTGCGGGCGTGGTGGTGTTAATTTCGACCATTGTCGGCGAAGCGAACTTCCTCGACTGGGGCTGGCGTATTCCGTTCTTTATTGCTCTGCCGTTAGGGATTATCGGGCTTTACCTGCGCCATGCGCTGGAAGAGACTCCGGCGTTCCAGCAGCATGTTGATAAACTGGAGCAGGGCGACCGCGAAGGTTTGCAGGATGGCCCGAAAGTCTCGTTTAAAGAGATTGCCACTAAATACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCACGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCACTGTTTGTGTTGGCGATCCCGGCGTTTATTCTGATTAACAGTAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTACGGGCGTTATGGCCTCTACCTTGCCAGCGATGTTCCCGACGCATATCCGTTACAGCGCGCTGGCGGCGGCATTTAATATTTCGGTGCTGGTTGCCGGTCTGACGCCAACGCTGGCGGCCTGGCTGGTCGAAAGCTCGCAGAATTTGATGATGCCTGCCTATTACCTGATGGTAGTGGCGGTGGTTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCGAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACTCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAA > 517 HMPREF9536_04670 NA electron_transfer_flavoprotein EFJ85050.1 11 MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWRDYLRQRMQP gamma_subgroup Escherichia_coli_MS_84-1 Escherichia_coli_MS_84-1 ADTK01000346 8513..9922 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 1387:>1410 Escherichia_coli_84-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_84-1_genome.Escherichia_coli_84-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_84-1_genome.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_64.9xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-JUL-2010 Escherichia_coli_MS_84-1_E_coli84-1-1.0_Cont1096.13,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D7XUB0_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296493155 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTK01000346 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1410 NA genomic_DNA NA MS_84-1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749533 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTK01000346.1 ATGACGGGGCGTTGCCTTTTCGGCTTCTCAGGCGAGAAGCCGTTCTTATTACCGGACAATGAAGGGGTAAAGATGAACACTTCACCGGTGCGAATGGATGATTTACCGCTTAACCGTTTTCACTGCCGCATTGCTGCGCTCACTTTCGGCGCACACCTGACCGACGGTTATGTTCTCGGCGTCATTGGTTACGCCATTATTCAGCTTACGCCCGCCATGCAACTGACGCCGTTTATGGCGGGAATGATCGGCGGCTCGGCGCTCCTTGGTTTGTTCCTTGGCAGCCTGGTTCTTGGGTGGATCTCCGACCATATTGGTCGGCAAAAAATCTTCACCTTCAGCTTTTTGCTGATTACGCTTGCTTCGTTTTTACAATTTTTTGCCACCACGCCAGAGCATCTTATTGGACTGCGCATTTTGATTGGCATTGGTCTGGGAGGCGATTATTCAGTAGGTCACACCTTGCTGGCTGAATTTTCCCCGCGCCGCCATCGCGGTATTTTGCTGGGCGCATTCAGCGTGGTGTGGACCGTAGGCTATGTGCTGGCAAGTATTGCCGGACATCACTTTATTTCCGAAAACCCGGAGGCCTGGCGCTGGCTACTGGCATCGGCAGCTCTGCCCGCGTTGTTGATTACGTTATTACGCTGGGGAACGCCAGAATCACCACGCTGGCTACTGCGCCAGGGGCGTTTTGCAGAAGCTCACGCTATCGTGCATCGCTATTTTGGTCCCCATGTTTTACTGGGCGATGAAGTGGTAACGGCGACCCATAAACACATCAAAACCTTGTTCTCTTCGCGTTACTGGCGGCGCACGGCGTTTAACAGCGTCTTCTTTGTCTGCCTCGTAATCCCATGGTTTGTGATTTATACCTGGCTGCCAACTATCGCCCAGACTATTGGTCTGGAAGATGCGCTGACTGCCAGCCTGATGCTTAATGCGTTGTTAATTGTGGGCGCGCTGCTGGGATTAGTTCTGACGCACCTGCTGGCACATCGCAAATTTTTGCTGGGAAGTTTTTTGCTGCTGGCGGCAACGCTGGTAGTCATGGCCTGTTTGCCTTCCGGCAGTTCATTAACGCTGCTGCTTTTTGTTCTCTTCAGCACCACCATTTCGGCAGTCAGTAATCTGGTGGGCATTTTGCCTGCGGAAAGTTTTCCTACTGACATTCGCTCGCTGGGCGTCGGTTTTGCCACCGCCATGAGTCGACTTGGCGCGGCGGTAAGTACTGGCCTGCTGCCGTGGGTGCTGGCGCAGTGGGGAATGCAAGTCACCTTATTGCTCCTGGCGACAGTGTTGTTGGTTGGTTTTGTTGTGACCTGGCTATGGGCACCAGAAACTAAAGCCCTCCCGCTGGTGGCGGCGGGAAATGTAGGAGGTGCGAATGAACATTCTGTTAGCGTTTAA > 518 HMPREF9548_02446 NA MFS_transporter,_sugar_porter_family_protein EFK02829.1 11 MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPIYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAESILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQTATL gamma_subgroup Escherichia_coli_MS_182-1 Escherichia_coli_MS_182-1 ADTM01000189 24607..26082 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1476 Escherichia_coli_182-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_182-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_60.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-JUL-2010 Escherichia_coli_MS_182-1_E_coli182-1-1.0_Cont344.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D7YIR3_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296494193 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTM01000189 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1476 NA genomic_DNA NA MS_182-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749545 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTM01000189.1 TTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGGGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCCACATAAATAGTGCTGCCAGAACGCCCATACACCCGTAAATCCAGTAGGAGAAACCGTTGTGGAAATGGGCCACCAGCCAGGAGTTTTTGTCCATCATCGGGAAGGTCCAGGAGACGAAGTAGTTCGCCAGCCACTGGGCCGCCACCGCGATTGCCAGCGCTTTACCACGAATGGCATTCGGGAAGATTTCCGACAGCAGAACCCAGCATACCGGACCCCAGGACATGGCAAAGGCGGCAACATAGAACAGCATCGACAGTAGCGCCACAATACCCGGTGCCTGAGTGTAAAACGCGGTACCGAGGCTAAACATACCGATTGCCATTCCGAGCGCGCCGATAATTTGCAGTGGCTTACGACCAAATTTATCCACCGTCATAATTGCCAGAACGGTGAAGGTGAGGTTGATAACTCCGACAATAATGGTCTGCAACAGCGCGATATCCGTGCTGGCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAACACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATAACGCCGATGACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGTTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACTTTCCGCCTGTTCTTGCTTGCCGCGTGACATCAGCCAGCGAGGACTTTCTGGCACGGTATACAGCAGCATTAAGAACAGCAGTGCAGGGATACATTCCGAGGCAAACATATAACGCCAGCCGTCAGTATTCAGCCAGCTGGCATCACCGGAACGGGCAATAAAATAGTTTACGCAGTAAACTAAAAGTTGCCCGAAAATAATCGCAAACTGGTTAAATGAAACCAGTTTTCCGCGAATATGAGCTGGAGCCAGTTCCGCAATATACATTGGTGAAAGCATTGAGGCTAAACCAACGCCAATACCGCCAATAATACGATAAATAACAAATTCCGGGACATAACCTGCCAGATAAATAGGTACTGTGTTGTCCGGGTTTATAGAGGTAAAACCAAGTTCTGGCCAGGCAGAACCTACACCAGAAATAAAAAACAGGACAGCAGCAATCTTAAGTGAATCACGACGGCCGAAGCGGTTACTGCAATAACCACCGAGGGCACCGCCGATGATGCAACCAATCAGAGCGCTGGCTACGCAAAATCCTAACAGGGAGTTGGCAGCGGATTCACTTAAGTTTTGTGGAGCAACAAAGACGGTATTGAGTGACTCAACAGTACCGGAAATAACGGCGGTGTCGTAGCCAAATAATAAACCACCTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCAT > 519 HMPREF9548_02940 NA transporter,_major_facilitator_family_protein EFK02336.1 11 MEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVVLAKLVSNGWSNNFLNAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFLLGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAESQLREVEQQIEREKSIRLPPLTSYQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSTLLIIIAVLGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFMVLGVMLLLCALVLSIFGIETRKVSLEEISEVN gamma_subgroup Escherichia_coli_MS_182-1 Escherichia_coli_MS_182-1 ADTM01000229 27558..28916 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1359 Escherichia_coli_182-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_182-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_60.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-JUL-2010 Escherichia_coli_MS_182-1_E_coli182-1-1.0_Cont373.11,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D7YK51_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296494153 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTM01000229 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1359 NA genomic_DNA NA MS_182-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749545 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTM01000229.1 TTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGCGTTTCGATGCCAAAAATGGAGAGAACCAGCGCACAAAGCAATAACATGACACCAAGTACCATAAACACCGTGATCGACCCATAATGTGTTAATAATGCCGCAACGCCATAGGGCGTGAAAACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCGCGCAGGCGTAAATGCGTTGGCCAAAGCTCCGGGATATAAACCGCCGACGCGAAGCAAACATACATGTATAAAAAGAAGATCATCACCAGGCCATAGATTAAAATCGCCCACTCTGTAGTCTGAATTGAATAGATATAGCCTAACACGGCAATAATAATAAGTAAGGTGGAGCCAAATAACCGACGAGGAAAATGATCAATAATTAATGCCGCAATAAATATTCCTACCGGAGCGCCAATCATAATAACAGCGGTCATTAATATTGATTTATCGACATCAATGCCGGAGTTAACAAATATGGTCGGTATCCATACGGTGATGGTATAAAGCGAGATGTTCATTGCAATTAAAACAGTAATCGCGACTAATGTACGTCGTAACATTTCACCTTTAAACAGGAGCCAGAAAGTACCCTTGATTACTTTAACCTTGCTGTTGCTCTGATACGAAGTAAGCGGGGGTAAACGAATACTCTTCTCTCTTTCAATTTGCTGCTCTACTTCACGAAGTTGGCTTTCTGCACCGGCGATTTGCCCTTTCCCTGCCAGCCATCGTGGCGACTCGATAAAGTATTTACCTGAGAGAAACCAGGCTAACAGTATGCCAATACCACCCAGCAGAAACATTATTCGCCAACTAAAAAAAGCGATAACCACCACGCCTATCGCCGCAGACAGCATGGGCGACCAGTTACCAACAAATGAGAGCCGCGCGGACCATTTTCCACGCACCGTCGCGGGGATAAACTCCGTAAATGAGGCATAGCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCAGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCAGTAAGTGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGCTTACCAGCTTTGCTAAGACGACATTACCGGAGTAACTCAAAAACCCTGTTAATAACAGACTAAAGCTTATAATACCAAATATACGATAATGAAACCGGGCCAAAGGCAAGCGGTCCAGTCTTGCGCCAATTTGATCATATTGTTCCAT > 520 HMPREF9548_03305 NA transporter,_major_facilitator_family_protein EFK01981.1 11 MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV gamma_subgroup Escherichia_coli_MS_182-1 Escherichia_coli_MS_182-1 ADTM01000266 18510..19919 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1410 Escherichia_coli_182-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_182-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_60.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-JUL-2010 Escherichia_coli_MS_182-1_E_coli182-1-1.0_Cont403.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D7YL56_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296494116 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTM01000266 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1410 NA genomic_DNA NA MS_182-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749545 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTM01000266.1 TTAAACGCTAACAGAATGTTCATTCGCACCTCCTACATTTCCCGCCGCCACCAGCGGGAGGGCTTTAGTTTCTGGTGCCCATAGCCAGGTCACAACAAAACCAACCAACAACACTGTCGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAACAGGCCATTACTACCAGCGTTGCCGCCAGCAGCAAAAAACTTCCCAGCAAAAATTTGCGATGTGCCAGCAGGTGCGTCAGAACTAATCCCAGCAGCGCGCCCACAATTAACAACGCATTAAGCATCAGGCTGGCAGTCAGCGCATCTTCCAGACCAATAGTCTGGGCGATAGTTGGCAGCCAGGTATAAATCACAAACCATGGGATTACGAGGCAAACAAAGAAGACGCTGTTAAACGCCGTGCGCCGCCAGTAACGCGAAGAGAACAAGGTTTTGATGTGTTTATGGGTCGCCGTTACCACTTCATCGCCCAGTAAAACATGGGGACCAAAATAGCGATGCACGATAGCGTGAGCTTCTGCAAAACGCCCCTGGCGCAGTAGCCAGCGTGGTGATTCTGGCGTTCCCCAGCGTAATAACGTAATCAACAACGCGGGCAGAGCTGCCGATGCCAGTAGCCAGCGCCAGGCCTCCGGGTTTTCGGAAATAAAGTGATGTCCGGCAATACTTGCCAGCACATAGCCTACGGTCCACACCACGCTGAATGCGCCCAGCAAAATACCGCGATGGCGGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGAATAATCGCCTCCCAGACCAATGCCAATCAAAATGCGCAGTCCAATAAGATGCTCTGGCGTGGTGGCAAAAAATTGTAAAAACGAAGCAAGCGTAATCAGCAAAAAGCTGAAGGTGAAGATTTTTTGCCGACCAATATGGTCGGAGATCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCAT > 521 HMPREF9531_01306 KEGG:_spe:Spro_4664_2.7e-20_sugar_transporter_K08070;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFJ93629.1 11 MSQITSPATYSISRPQDVIDIVNKNSAINTSIGVIFIALGGILIDAYQAAMVGFGNKYIAAQFGISPGLAATVNASVLIAALIGGLLANRVINRFGQKRAFIIGMGLCTIGAAAVAIAPSIWWVLVCRVIMGFGLGIDFPLATNAVAELRGSTSKKTGTSVNLWQMAWYVSTTVVYLVLLPLLLSGIAEEQLWRYGIFIGAIFAVIFMILRYFFIGESAMWAARVGRYQEACDILGKRYGVQARVAASGTTEAKFSEKAENKYSGGYGILFNDRYRKRTILGCVVATMQAWQYNAVGVYLPLTLAGIISGGLTGALTGSAVVNALCGVTGGMIGSFILQRLGTRRQSMYGFAVVTLALLSLGALATTNPWLSLGLLGSIIFFHSAGPGGLGMTIATLSYPPAIRPTGVGFARAIMRTGAIAGLIFWPMLWGALKTEAFYWLAIVPFLGFLTCVLINWEPLGANVDAEDAEVLAELKK gamma_subgroup Escherichia_coli_MS_45-1 Escherichia_coli_MS_45-1 ADTO01000076 52906..54339 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1434 Escherichia_coli_45-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut._This_is_a_reference_genome_for_the_HumanMicrobiome_Project._This_project_is_co-owned_with_the_HumanMicrobiome_project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA),_funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,Baltimore_(EPRU;_contract_no._NO1-AI-30055).Source_DNA_provided_by_Phillip_I._Tarr,_MD_(Division_ofGastroenterology_and_Nutrition,_Department_of_Pediatrics,Washington_University_School_of_Medicine,_Campus_Box_8208,_660_S.Euclid,_St._Louis,_MO_63110,_USA),_funded_by_Effect_of_CrohnsDisease_Risk_Alleles_on_Enteric_Microbiota_(UH2_DK083994_to_EllenLi,_MD,_PhD_(Division_of_Gastroenterology,_Washington_UniversitySchool_of_Medicine,_Campus_Box_8124,_660_S._Euclid,_St._Louis,_MO63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_45-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_60.6xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-JUL-2010 Escherichia_coli_MS_45-1_strain_MS45-1_E_coli-1.0_Cont155.2,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D7YVR2_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296495059 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTO01000076 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1434 NA genomic_DNA NA MS45-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749528 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTO01000076.1 TTATTTCTTCAATTCAGCCAGAACCTCTGCGTCCTCAGCATCAACATTTGCACCCAGTGGTTCCCAATTAATCAATACACAGGTCAGGAATCCCAGGAATGGCACGATTGCCAACCAGTAAAACGCTTCAGTTTTCAACGCACCCCACAGCATCGGCCAGAAAATGAGTCCTGCAATTGCCCCTGTGCGCATAATAGCGCGGGCAAATCCGACCCCAGTAGGGCGAATAGCGGGAGGATAAGAGAGTGTGGCAATGGTCATGCCCAGCCCACCAGGACCCGCTGAATGGAAGAAAATAATTGATCCCAATAACCCTAAAGACAGCCAGGGATTAGTCGTTGCCAGTGCGCCTAACGACAGCAATGCTAAGGTCACAACAGCAAATCCATACATCGACTGTCGGCGAGTACCCAGTCGTTGGAGAATAAACGAGCCGATCATCCCGCCTGTCACCCCACAAAGGGCATTCACGACGGCAGAACCGGTTAACGCGCCAGTAAGCCCGCCACTTATTATTCCCGCCAACGTAAGAGGAAGATAAACACCTACGGCGTTATATTGCCACGCCTGCATGGTTGCCACGACACAGCCAAGAATGGTGCGTTTGCGGTAACGATCATTAAATAAGATGCCATATCCACCACTGTATTTATTCTCTGCTTTTTCCGAGAATTTCGCTTCTGTTGTACCCGATGCCGCAACGCGAGCCTGAACACCATAACGTTTTCCCAGAATGTCGCACGCTTCCTGGTAACGCCCGACGCGTGCGGCCCACATTGCGGATTCACCAATAAAGAAGTAACGCAAAATCATGAAGATGACTGCAAAAATAGCTCCGATGAATATTCCGTAACGCCACAATTGTTCTTCAGCGATACCCGACAGAAGCAGCGGCAAAAGCACCAAATAAACAACGGTTGTCGAAACATACCAGGCCATTTGCCAGAGGTTGACCGACGTGCCGGTTTTCTTCGACGTTGAACCACGAAGCTCTGCCACGGCATTGGTTGCCAAAGGGAAGTCGATGCCTAAACCAAAGCCCATGATGACGCGGCACACCAGCACCCACCAGATACTGGGAGCAATAGCTACCGCTGCAGCACCGATGGTGCACAGCCCCATGCCAATAATAAATGCCCGCTTTTGCCCAAAGCGGTTTATTACTCGGTTCGCTAATAAACCGCCAATTAACGCGGCGATTAATACTGATGCATTGACGGTTGCAGCAAGACCCGGCGAAATGCCGAATTGAGCGGCAATGTATTTATTACCAAACCCCACCATCGCCGCCTGGTAGGCATCAATCAATATGCCGCCCAAAGCAATAAAAATAACGCCGATACTGGTGTTGATTGCAGAGTTCTTATTAACAATATCAATTACGTCCTGTGGCCGACTAATTGAATAAGTTGCAGGACTGGTGATTTGACTCAT > 522 HMPREF9531_01354 Psort_location:_Cytoplasmic,_score:_8.96 electron_transfer_flavoprotein EFJ93497.1 11 MNILLAFKAEPDAGMLAEKEWQAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEDAVLLETAADLRFAPEFVARHIAEWQYQNPLELIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQYYLCQRMQP gamma_subgroup Escherichia_coli_MS_45-1 Escherichia_coli_MS_45-1 ADTO01000080 10329..11738 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 1387:>1410 Escherichia_coli_45-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut._This_is_a_reference_genome_for_the_HumanMicrobiome_Project._This_project_is_co-owned_with_the_HumanMicrobiome_project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA),_funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,Baltimore_(EPRU;_contract_no._NO1-AI-30055).Source_DNA_provided_by_Phillip_I._Tarr,_MD_(Division_ofGastroenterology_and_Nutrition,_Department_of_Pediatrics,Washington_University_School_of_Medicine,_Campus_Box_8208,_660_S.Euclid,_St._Louis,_MO_63110,_USA),_funded_by_Effect_of_CrohnsDisease_Risk_Alleles_on_Enteric_Microbiota_(UH2_DK083994_to_EllenLi,_MD,_PhD_(Division_of_Gastroenterology,_Washington_UniversitySchool_of_Medicine,_Campus_Box_8124,_660_S._Euclid,_St._Louis,_MO63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_45-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_60.6xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-JUL-2010 Escherichia_coli_MS_45-1_strain_MS45-1_E_coli-1.0_Cont157.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D7YVV7_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296495055 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTO01000080 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1410 NA genomic_DNA NA MS45-1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749528 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTO01000080.1 ATGACGGGGCGTTGCCTTTTCGGCTTCTCAGGCGAGAAGCCGTTCTTATTACCGGACAATGAAGGGGTAAAGATGAACACTTCACCGGTGCGAATGGATGATTTACCGCTTAACCGTTTTCACTGTCGAATTGCTGCGCTCACTTTCGGCGCACACCTGACCGACGGTTATGTCCTCGGCGTTATTGGTTACGCCATTATTCAGCTTACGCCCGCCATGCAACTGACGCCGTTTATGGCGGGAATGATCGGCGGCTCGGCGTTACTTGGTTTGTTTCTTGGCAGCCTGGTTTTGGGGTGGATCTCCGACCATATCGGGCGGCAAAAAATCTTCACCTTCAGTTTTATGCTGATTACGCTCGCTTCGTTCTTGCAATTTTTTGCCACCACGCCAGAGCATCTTATTGGATTGCGCATTTTGATCGGCATTGGTCTGGGAGGCGATTACTCAGTCGGTCACACCTTGCTGGCTGAATTTTCCCCGCGCCGCCATCGCGGTATTTTGCTGGGCGCATTCAGTGTGGTGTGGACCGTAGGCTATGTGCTGGCAAGTATTGCCGGACATCACTTTATTTCCGAAAGCCCGGAGGCCTGGCGCTGGCTGCTGGCATCAGCAGCGTTACCAGCCTTGCTGATTACGCTGCTACGTTGGGGCACGCCGGAATCGCCACGCTGGCTACTGCGCCAGGGGCGTTTTGCAGAAGCTCACGCTATCGTTCATCGCTATTTTGGCCCGCATGTTTTACTGGGCGATGAAGTGGCAACGGCGACCCATAAACACATCAAAACCTTGTTCTCTTCGCGCTACTGGCGGCGCACGGCGTTTAACAGCGTCTTCTTTGTCTGCCTCGTAATCCCATGGTTTGTGATTTATACCTGGCTGCCGACCATCGCCCAAACTATTGGTCTGGAAGATGCGCTGACTGCCAGCCTGATGCTTAATGCGTTGTTAATTGTTGGCGCGTTATTAGGGTTAGTGTTGACCCACTTGTTAGCGCATCGCAGATTTTTACTGGGAAGTTTTTTGCTGCTAACGGCAACGCTGGTAGTAATGGCCTGTTTGCCTTCCGGCAGTTCATTAACGCTGCTGCTTTTTGTTCTCTTCAGCACCACCATTTCGGCAGTCAGTAATCTGGTGGGCATTTTGCCTGCGGAAAGTTTTCCTACTGACATTCGCTCGCTGGGCGTCGGTTTTGCCACCGCCATGAGTCGGTTGGGGGCGGCGGTAAGTACTGGCCTGCTGCCGTGGGTGCTGGCGCAGTGGGGAATGCAAGCCACCTTATTGCTCCTGGCGGCAGTGTTGTTGGTTGGTTTTGTTGTGACCTGGCTATGGGCACCAGAAACCAAAGCACTCCCGCTGGTGGCGGCGGGAAATGTAGGAGGTGCGAATGAACATTCTGTTAGCGTTTAA > 523 HMPREF9534_00746 KEGG:_rcm:A1E_04550_8.0e-09_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_metabolite:H+_symporter_family_protein EFJ83180.1 11 MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVTAAQPSRSL gamma_subgroup Escherichia_coli_MS_69-1 Escherichia_coli_MS_69-1 ADTP01000043 1342..2625 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1284 Escherichia_coli_69-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_69-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_58.2xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-JUL-2010 Escherichia_coli_MS_69-1_E_coli69-1-1.0_Cont66.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D7Z953_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296495518 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTP01000043 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1284 NA genomic_DNA NA MS_69-1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749531 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTP01000043.1 ATGGATTTCCAGTTATATTCGCTCGGCGCAGCGTTAGTGTTTCATGAAATATTTTTTCCTGAATCATCAACGGCAATGGCGTTAATTCTGGCAATGGGAACCTACGGTGCAGGTTATGTGGCGCGTATTGTCGGAGCATTTATTTTCGGCAAAATGGGCGACAGAATCGGGCGTAAAAAAGTACTCTTTATTACCATCACCATGATGGGGATCTGTACCACCTTAATTGGTGTGTTACCGACCTATGCACAGATTGGTGTTTTTGCACCCATCTTGCTGGTGACGCTGCGTATTATTCAGGGATTGGGTGCAGGTGCGGAAATTTCCGGTGCCGGTACGATGCTGGCGGAATATGCGCCAAAAGGTAAGCGCGGAATTATCTCCTCATTTGTGGCTATGGGGACTAACTGCGGAACCTTGAGCGCAACGGCAATCTGGGCCTTTATGTTCTTCATTCTCAGTAAAGAGGAACTGCTTGCGTGGGGATGGCGTATACCGTTCCTGGCGAGCGTTGTCGTGATGGTCTTTGCTATCTGGTTGCGTATGAATCTGAAAGAAAGCCCGGTCTTTGAGAAGGTTAACGACAGCAACCAACCGACAGCAAAACCTGCACCTGCTGGTAGCATGTTCCAGAGCAAATCCTTCTGGCTGGCAACAGGGCTGCGTTTTGGTCAGGCTGGTAACTCCGGTTTAATTCAGACTTTCCTTGCAGGCTATTTAGTGCAGACGTTATTGTTTAACAAAGCAATTCCAACAGATGCATTGATGATCAGTTCGATTCTCGGCTTTATGACCATTCCGTTCCTTGGTTGGTTATCCGATAAAATTGGTCGCCGGATCCCGTATATTATTATGAATACCTCTGCGATTGTGCTGGCGTGGCCAATGCTTTCTATCATCGTAGATAAAAGCTATGCCCCGAGCACCATTATGGTTGCACTGATTGTGATTCATAACTGTGCGGTGCTGGGATTATTTGCTCTGGAAAACATTACCATGGCAGAAATGTTCGGCTGTAAAAACCGCTTTACCCGGATGGCTATTTCTAAAGAAATTGGTGGTCTTATCGCTTCCGGTTTTGGTCCTATCCTGGCGGGTATTTTCTGCACCATGACGGAATCCTGGTATCCGATCGCCATTATGATCATGGCATATTCAGTGATTGGTTTAATCTCTGCGCTGAAAATGCCAGAAGTGAAAGACCGTGATTTAAGTGCACTGGAAGATGCCGCGGAAGATCAACCGCGTGTTGTAACAGCTGCGCAACCTTCAAGAAGTCTGTAA > 524 HMPREF9534_01292 KEGG:_dfe:Dfer_2102_6.2e-40_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFJ82640.1 11 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG gamma_subgroup Escherichia_coli_MS_69-1 Escherichia_coli_MS_69-1 ADTP01000092 11105..12436 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1332 Escherichia_coli_69-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_69-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_58.2xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-JUL-2010 Escherichia_coli_MS_69-1_E_coli69-1-1.0_Cont144.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D7ZAP4_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296495469 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTP01000092 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1332 NA genomic_DNA NA MS_69-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749531 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTP01000092.1 TTACCCCATTCTCTGCCCGCGGATGGTCATATTGCTGGTCTGCGCCAGTGACATCCCTCGAGTCTCCGGGGCAAACGCTACGGAAATCAACAAGCCAAACAGCGAGATACCCGCCCCCATTAGCATCGTGTTACTGATACCGTAATTGTTGATAAAGATCGGCAGTGCCCAGGTCGAAACAATAGTGCCAATACGACTTAAGGACATAATCACGCCCACGGCAGAGGCGCGGATATCTGTCGGGAAGAGTTCATTAGGATAGAGCCACTGCAAATTACCTGGCCCGCCAGAGAAAAAGGCATACACCGCAAAGGCCATCACTACCAGCCAGATCCCCATATCCGGGATCAGCCCCAAAACCGCCAGCGCCAGCGTCATCATGGCAAAGCTGCCAATCAACAATGGACGCCGTCCGGCAGTGTTTAACCACAGCATCGGCGGAATACAGCCAAGCATAAAGAACAGGCTAATCACCACATTCCCCAGTGCCGCGTTTTTGCCAACCCCCAACCCCAACAAACCAACGATTTGCGGGCCAAAGGTGTAAATGGCGAACATTGGGATCACCTGGCAGGTCCAGATGGCGGCAACAAACAGAACAAAAGGAAAATGGCGGCGATTAAACAGATCGCGAAAACGGGTTTGCTGCGGCTGCTCTTCATCGAAAGCCACCGGTTCGCCAAACAGTTTGATCATCATCTCTTCGCACTCTTTTACTCGCCCTTTGCGTAACAACCAGCGGGGAGATTCAGGCAGTTCGAATCGACCAATCAAAATCAACAAACAGGGGATCGCTGCGCTACCCAGCATCCAGCGCCAACCACCTTCCACATCATAAAGCCAGTAACCGACCAGATCGGCGCAGGTCGCGCCGACATACCACATGGCGGCGATAAAGCTGATGGAAAATGCCCGCTGACGGGTACTGGAGAACTCGGTGATCATTGAGGTGGCAATGGGATAATCTGCACCGATGACAATGCCGATGAGTACCCGCATCACCAACAGTTCGACGGGGGATGAGACAAACATCGTCGCCACCGATATCACGCCGATGGCGATGATATCAATGAGGAACATTTTGCGCCGTCCGACTTTATCGGAAATATAACCAAACAGCGATGTGCCAACGAACAGCCCGGCGAGCGTTCCCGCGCCCAGCAAGCCAATCCAGTCAGCGTCCAGTTTCAGCGCCGGGGTCAGTTGCTCCAGCGCCACGCCAATCATTACCAGTACATAACCATCCAGAAACGGACCACCGCTTCCCCACAGCAAAATGCGGCGGTGAATAGAGGAGAATTTGAGATCGTCAAAGTTTCTGGACGGTTGCAT > 525 HMPREF9534_02752 KEGG:_gdj:Gdia_1773_4.8e-15_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_sialate:H+_symporter_family_protein EFJ81221.1 11 PPPPGGRLTMSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLACGFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILYRGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGRAKNDLVKTKS gamma_subgroup Escherichia_coli_MS_69-1 Escherichia_coli_MS_69-1 ADTP01000170 2873..4390 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:>1518 Escherichia_coli_69-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_69-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_58.2xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-JUL-2010 Escherichia_coli_MS_69-1_E_coli69-1-1.0_Cont230.7,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D7ZES2_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296495391 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTP01000170 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1518 NA genomic_DNA NA MS_69-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749531 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTP01000170.1 TTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCGGCCAAATGGCACGGCACCGCTAAATGGTTTGCCGTCGATAGCGTCATGAGTACGCAATGCTTCCGGGCGCAGCCAACGCTGAACGCGGGAAGGCATATCCAGACCAATCAGCAGGATCACCACAAATGTCAGACTGAACGAGAGCGATGCCAGCGCAGTACCCAGATCCAGACGTTGAGCGATCAACGCGCCGATGATTGGGGCCAGTGCACCGCCCAATGCGCCGACGTTGTAGGTAAAGCCCAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTCGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCAATCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCGACAGTATGCGGGTTATAAGCCAGATCGGTTTTCAGATACGTTGGCAGCAGCGCCTGAATCGGCCATGAGTAGAGGAAAGCAAACAACACGACCACCATCAGCATTACGCCCGTTGGCCAGCGTTTGCCCGTACTTTGCACCATAAAGCTGATAAAGATTGCGGCGCATAACAGCCCAAGAACAGCGACGATCGCGGCATTTTGCAGGTTACCGGCGAAGCAAAACCACAGCGCAGTAGCCGCCGCCAGTGTCATTACGATATTGGCAATGCGATGTTCACCACGGTAGAGAATATCTACCATCGTGCGTACTGGTGCTTTACCAGCATGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATTGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCGGAACCACCAGGCTATAGACCTGAGCGGCAACGACGGCCCCCACAGAGAAGCCGGAAATCAGAAAACCACTGGCTTTATTACGCAGATGTTTTGGCCAGCTTTCAATGACATAGGTGGCGCTGGAACCGTATTCACCCGCCATCCCCATGCCGATGACCAGACGAGCGATAAACATGGTGATGTAGCCTGGCGCAAAGCCGCAGGCCAGCGTCCCGGCCGAGAAGAGAACGATGCTGGTGACCATTGCCAGACGACGCCCGTAGCGGTCACCCATAGCGCCGAGCATCAGGCCGCCGAACCAGCGAGAGATAAAGGCTGCGGAGATCAGACTTGCCGCCTGCACCGTCGTCAGCCCGAATTCACCTTGTACTTCGGTGAGTACCAGGGCGATTAAAACGAAATCAAAACCGTCAAGCAGATATCCCAACCAGGCAGCGGAAAATGCCCGCCATTGTGCGCGGTTGAGATGGCGATACCACGGGATATTCTGGGTTGTAGTACTCATTGTGAGTCTCCCGCCGGGGGGGGGGGG > 526 HMPREF9530_03038 NA MFS_transporter,_sialate:H+_symporter_family_protein EFK20391.1 11 MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLACGFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHGGKAPVRTMVDILYRGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNDLVKTKS gamma_subgroup Escherichia_coli_MS_21-1 Escherichia_coli_MS_21-1 ADTR01000280 29316..30806 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1491 Escherichia_coli_21-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_21-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_57.3xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 12-JUL-2010 Escherichia_coli_MS_21-1_E_coli21-1-1.0_Cont508.9,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8A912_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296496582 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTR01000280 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1491 NA genomic_DNA NA MS_21-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749527 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTR01000280.1 TTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTAAATGGTTTGCCGTCGATAGCGTCATGAGTACGCAATGCTTCCGGGCGCAGCCAACGCTGAACGCGAGAAGGCATATCCAGACCAATCAGCAGGATCACCACAAACGTCAAACTGAACGAGAGCGATGCCAGCGCAGTACCCAGATCCAGACGTTGAGCGATCAACGCGCCGATGATTGGGGCCAGTGCGCCGCCCAATGCGCCAACGTTGTAGGTAAAGCCCAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTCGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCAATCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGACTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCGACGCAGCACCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCGACAGTATGCGGGTCATAAGCCAGATCGGTTTTCAGATACGTTGGCAGCAGCGCCTGAATCGGCCATGAGTAGAGGAAAGCAAACAACACGACCACCATCAGCATTACGCCCGTTGGCCAGCGTTTGCCCGTACTCTGCACCATAAAGCTGATAAAGATTGCGGCGCATAACAGCCCAAGAACAGCGACGATCGCGGCATTTTGCAGGTTACCGGCGAAGCAGAACCACAGCGCAGTAGCCGCCGCCAGTGTCATTACGATATTGGCAATGCGATGTTCACCACGGTAGAGAATATCCACCATTGTGCGTACCGGTGCTTTACCCCCGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATTGGCAAAATGCCGATAAAGAACAGCGCGCGCCAGCCCCAGACCGGAACCACCAGACTATAGACCTGAGCGGCAACGACGGCCCCCACTGAGAAGCCTGAAATCAGAAAACCACTGGCTTTGTTACGCAGATGCTTTGGCCAGCTTTCAATGACATAGGTGGCGCTGGAACCGTATTCACCCGCCATCCCCATGCCGATGACCAGACGAGCGATAAACATGGTGATGTAGCCTGGCGCAAAGCCGCAGGCCAGCGTCCCGGCCGAGAAGAGAACGATGCTGGTGACCATTGCCAGACGACGCCCGTAGCGGTCACCCATAGCGCCGAGCATCAGGCCGCCGAACCAGCGAGAGATAAAGGCTGCGGAGATCAGACTTGCCGCCTGCACCGTCGTGAGCCCGAATTCACCCTGTACTTCGGTGAGTACCAGGGCGATTAAAACGAAATCAAAACCGTCAAGCAGATATCCCAACCAGGCAGCGGAAAATGCCCGCCATTGTGCGCGGTTAAGATGGCGATACCACGGGATATTCTGGGTTGTAGTACTCAT > 527 HMPREF9547_03882 NA MFS_transporter,_sugar_porter_family_protein EFJ64939.1 11 MNMFVSVAAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEIRESLKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFVGITFWLIPETKNVTLEHIERKLMAGEKLRNIGV gamma_subgroup Escherichia_coli_MS_175-1 Escherichia_coli_MS_175-1 ADUB01000326 7..1365 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1359 Escherichia_coli_175-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_175-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_63.5xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 08-JUL-2010 Escherichia_coli_MS_175-1_E_coli175-1-1.0_Cont670.7,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8B7J6_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296499686 Submitted_(14-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADUB01000326 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1359 NA genomic_DNA NA MS_175-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749544 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUB01000326.1 TCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGATATGTTCCAGCGTGACATTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAACGTACCGGCAGCGCCAATGCTATCAAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACCCAGTTCGTGGTGGTCGAACAGGTAATACCGAAATCGCGGCATTTCAGCGGCTGAATTTCAGAGCACAGGATCCACACCACTGGCGCGGCGCTCATCGCATAACCGGCAATACACATCATCGTCATGCCAACAGAGAGCCAGGACAAGCCACTGGAAGCCGTACCGTTATCAAACTGCATCAGGCAATAGCCCAGCACCAGAGTGCCTAACGCCATCACGCTGAAACCAATTTTCAGAGCCGGTTTACGCCCTGCTTTATCTACCGTAAACACCGCAATAAAGGTGGCGAACATAAAGGTCAGCCCTACGACCAGAGTCGCAATCATCTGTTGTTCTGTGGTCGTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGTTGATCTTAAACAGTGCCCAACCGCCCTGTTTTAACTTCAGGCTTTCACGAATTTCGTTGAGTTCTTCTCGCGCTTTTTCCGACGTATCGCGCAGCATACGCAATACTTCTTCCGCCTCAATATGACGCCCCTTTTCCGCCAGCCAGCGCGGGCTATTTGGCAGGAAGACTACCAGAATAATCAGCAGAACTGCTGGTAAAGCAAGAACCCCCAACATTGCGCGCCAGTTACCGCTATAACTGAACGCTGTATCGGATAAAAACGCCAGCACGATGCCGAGTGTGACCATCAACTGGTACATACTGATCATCTTACCGCGAACGTTTTCACTTGCCATTTCAGAAAGATACAGAGGAGCGGTGTAAGACGCGATCCCGACAGCAATGCCCAGCACCACACGAGCGGCGATTAACATCTCTACGCTGGTCGCAAAAGCGGACCCTATAGAACCGAGTACAAACAGGATGGCCCCCGCCATCAGGCTGTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCAT > 528 HMPREF9553_00780 NA transporter,_major_facilitator_family_protein EFJ63121.1 11 MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFMLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNAGGANEHSVSV gamma_subgroup Escherichia_coli_MS_200-1 Escherichia_coli_MS_200-1 ADUC01000071 37611..39020 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1410 Escherichia_coli_200-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_200-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_76.4xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 08-JUL-2010 Escherichia_coli_MS_200-1_E_coli1200-1-1.0_Cont155.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8BCT9_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296500387 Submitted_(14-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADUC01000071 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1410 NA genomic_DNA NA MS_200-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749550 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUC01000071.1 TTAAACGCTAACAGAATGTTCATTCGCACCTCCTGCATTTCCCGCCGCCACCAGCGGGAGTGCTTTGGTTTCTGGTGCCCATAGCCAGGTCACAACAAAACCAACCAACAACACTGCCGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGGGTTAATGAACTGCCGGAAGGCAAACAGGCCATCACGACCAGCGTTGCCGCCAGCAGCAAAAAACTTCCCAGCAAAAATTTGCGATGTGCCAGCAGGTGCGTCAGAACTAATCCCAGCAGCGCGCCCACAATTAACAACGCATTAAGCATCAGGCTAGCGGTCAACGCATCTTCCAGACCAATAGTTTGGGCGATAGTTGGCAGCCAGGTATAAATCACAAACCATGGGATTACGAGGCAGACAAAGAAGACGCTGTTAAACGCCGTGCGCCGCCAGTAGCGCGAAGAGAACAAGGTTTTGATGTGTTTATGGGTCGCCGTTGCCACTTCATCGCCCAGTAAAACATGCGGGCCAAAATAGCGATGAACGATAGCGTGAGCTTCTGCAAAACGCCCCTGGCGCAGTAGCCAGCGTGGCGATTCCGGCGTGCCCCAACGTAGCAGCGTAATCAGCAAGGCTGGTAACGCCGCTGATGCCAGCAGCCAGCGCCAGGCCTCCGGGCTTTCGGAAATAAAGTGATGTCCGGCAATACTTGCCAGCACATAGCCTACGGTCCACACCACACTGAATGCGCCCAGCAAAATACCGCGATGGCGGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCGACTGAGTAATCGCCTCCCAGACCAATGCCGATCAAAATGCGCAATCCAATAAGATGCTCTGGCGTGGTGGCAAAAAATTGCAAGAACGAAGCGAGCGTAATCAGCATAAAACTGAAGGTGAAGATTTTTTGCCGCCCGATATGGTCGGAGATCCACCCCAAAACCAGGCTGCCAAGAAACAAACCAAGTAACGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATAACGCCGAGGACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATTCGACAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCAT > 529 HMPREF9553_03012 NA transporter,_major_facilitator_family_protein EFJ60903.1 11 MTAIVNETVSVKKKPSGRRVIFASAFGNALEFFDFGVYNFFVVYISTLFFPPSADHNVALLLAFATFGVSFFMRPLGGIIVGAWADRFGRKPAMVFTIALMSLGTLMIGIAPTYETAGYWGTATLVLARLIQGVAAGGEVGASMSLLVESAPANRRGFYSSWSLATQGLATTFGGVVALGLSAWLPFATGSETVMAEWGWRVPFFIGVLLAPIGCWLRLSLENDVPEPVRNKKAATSESAFSLLLQHKATIVNGVLLAIGSTVATYISLFYYGTWAAKYLAMPQHYSHAAMLLAGVITFVGALLVGMLCDSVGRKKLILISRVMVLLCSWPSFWLLVNYPSPGMLLTVVFVMVSFTTLGGVPVMLLISELLPKRIRALGFALVYSIGVAIFGGFAQYFATQSIVLLDSLTAPAWYLGGGTLLSMLALLYVKEPAKELQ gamma_subgroup Escherichia_coli_MS_200-1 Escherichia_coli_MS_200-1 ADUC01000236 4047..5363 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1317 Escherichia_coli_200-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_200-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_76.4xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 08-JUL-2010 Escherichia_coli_MS_200-1_E_coli1200-1-1.0_Cont386.11,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8BJ30_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296500222 Submitted_(14-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADUC01000236 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1317 NA genomic_DNA NA MS_200-1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749550 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUC01000236.1 ATGACGGCGATCGTAAATGAAACCGTGAGTGTGAAGAAAAAGCCCAGCGGCAGGCGGGTGATCTTTGCCTCGGCGTTTGGCAATGCGCTCGAATTTTTTGATTTTGGCGTTTACAACTTTTTTGTGGTCTATATCAGTACGCTTTTCTTCCCTCCCAGTGCCGATCATAACGTCGCGCTGTTACTGGCATTTGCAACGTTTGGTGTGAGCTTTTTTATGCGTCCGCTCGGTGGGATTATCGTTGGTGCCTGGGCCGATCGCTTCGGGCGTAAACCGGCGATGGTGTTCACTATTGCTCTGATGAGCCTCGGTACGCTGATGATCGGCATCGCACCGACGTATGAAACGGCGGGCTATTGGGGAACTGCAACGCTGGTGCTGGCGCGTCTAATTCAGGGCGTTGCGGCAGGTGGTGAAGTCGGGGCTTCAATGTCGCTACTGGTGGAGTCAGCTCCGGCAAATCGTCGCGGCTTTTACAGCAGTTGGTCACTGGCGACCCAAGGGCTGGCAACGACCTTCGGTGGGGTTGTTGCTTTAGGTCTGAGCGCATGGCTACCGTTCGCCACAGGTTCAGAAACCGTAATGGCAGAATGGGGCTGGCGTGTGCCGTTTTTTATTGGCGTGTTATTAGCACCTATCGGTTGCTGGTTGCGTCTGAGCCTGGAAAATGACGTACCTGAGCCAGTGCGCAATAAAAAAGCTGCTACCAGCGAAAGCGCGTTTTCTCTGCTCCTGCAACATAAGGCGACTATCGTTAATGGCGTTTTACTCGCTATTGGTAGCACGGTCGCAACCTATATCTCCCTCTTTTATTACGGCACCTGGGCGGCGAAGTATCTGGCGATGCCTCAACATTATTCTCATGCAGCGATGTTACTGGCGGGGGTAATTACGTTTGTGGGTGCGCTGTTGGTGGGGATGCTATGTGATTCGGTTGGGCGTAAAAAGCTGATTTTAATCTCCCGTGTGATGGTGCTTCTCTGTAGCTGGCCGTCATTCTGGCTGTTGGTGAATTACCCAAGCCCTGGCATGTTGCTGACGGTGGTTTTCGTGATGGTCAGCTTTACCACGCTTGGCGGTGTGCCAGTGATGTTGTTGATCTCTGAACTGTTGCCGAAACGGATTCGGGCATTAGGTTTCGCGCTGGTTTATAGCATTGGCGTAGCAATCTTTGGCGGTTTTGCGCAATATTTCGCCACGCAATCCATCGTGTTGCTGGATAGTCTGACGGCTCCGGCGTGGTATCTGGGGGGAGGCACGTTGCTGTCGATGCTGGCGTTGTTGTACGTAAAAGAACCGGCCAAAGAATTGCAGTAA > 530 HMPREF9553_04614 NA MFS_transporter,_sugar_porter_family_protein EFJ59328.1 11 MPDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTSAEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERNLMKGRKLREIGAHD gamma_subgroup Escherichia_coli_MS_200-1 Escherichia_coli_MS_200-1 ADUC01000380 43..1437 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1395 Escherichia_coli_200-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_200-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_76.4xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 08-JUL-2010 Escherichia_coli_MS_200-1_E_coli1200-1-1.0_Cont661.8,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8BNK1_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296500078 Submitted_(14-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADUC01000380 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1395 NA genomic_DNA NA MS_200-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749550 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUC01000380.1 TTAATCGTGAGCGCCGATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTGTTTGGTTTCCGGTACCAGCCACAATGTCAGCAGGATAAACAGTACGTTCAGAGCAGCATACACCCAGAAGGTGTTGGCGTTACCCAGCGTGTTGAGCATGGTCAGGAACGTTGCGCCAACGATCATGTTGGCAATCCAGTTGGTGGCAGTGGAGCAGGTGATGCCAAAATCGCGGCCTTTCAGCGGCTGAATTTCGGAGCACAGTACCCAAATCAGCGGACCGGCACTCATGGCAAAACCGACAATAAACATCAGCAGCATGGCGATGGCGAAATACTGCGCCGACGGAGAGTGGATACCGATATGCATCATTGTACCGAGTACGCCCATACCAGCAGCCATCACCAGGAAGCCCAGCGTTAGCGTTGGTTTACGTCCCCAGCGGTCAACAAGGCCGATTGCGATAAAGGTGGCAAGTACGTTGGTCAGGCCGACAATCACTGTCCCCCACATTTGCTCGGTGGTGTTGGTATAACCCGCCAGTTCGAAGATTTTCGGCGCGTAATACATGATGACGTTCATCCCGGTGAATTGCTGCATTACCTGCAATAGTACGCCAAGGAACACCGCGCGGCGGAAGTTGCTATTCTCTTTAAACAGCGCCCAGCCACTCTGTTTAACCTGCAAACTTTCACGGATTTCATCCAGTTCGCGTTTCGCTTCCGCGCTGGTGTCACGCAGGCGTAGCAGCACGCGTTCGGCATCAACAAAACGGCGTTTGGCGGCAAACCAACGTGGGCTGTCTGGCAGGAAGAAGACACCAATCAGCAGCAAAATTGCCGGGATGATAATCACACCCAGCATCCAGCGCCATGCACCGGTGTAGCTGAAGGCGGTATCAGAAAGATAAGCGCCGAGGATCCCGATAGTGATCATCAACTGATACATCGAGATCATACTGCCGCGAATTTTTTCCGGCGCAATTTCAGAGAGGTACAGCGGTGCGGTATAAGAGGCCACACCCACTGCCAGCCCCAGCAAAACGCGGGAAAGAATCAGTACTTCAACGTTTGGCGCAGCAGCAGAGAACAGTGAACCGGCAACAAACAAGATTGCGCCGATCATCAGGCTCTTTTTGCGCCCGAGTTTAAAGGAGAGCCAGCCGCTGCCCACCGCACCGACTGCCGCACCGAACATCATGGAGCTTACGACCCATTCTTGCGTGTGCGAAGTAATCTGGAATTCATCTGCAATAAACGGCAGTGCGCCAGCAATTACACCGATATCCAGGCCAAAGAGTAATCCCGCCAGAGCGGCAAGGAAGCAGACGAAAAACGTCATTGCCTTGTTTGACCGCCCCTGTTTTTTAGCGTCAGGCAT > 531 HMPREF9551_01034 KEGG:_dfe:Dfer_1599_5.1e-21_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFI89916.1 11 MEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVVLAKLVSNGWSNNFLNAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFLLGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAECQLREVEQQIEREKSIRLPPLTSYQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSTLLIIIAVLGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFMVLGVMLLLCALVLSIFGIETRKVSLEEISEVN gamma_subgroup Escherichia_coli_MS_196-1 Escherichia_coli_MS_196-1 ADUD01000138 10787..12145 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1359 Escherichia_coli_196-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_196-1_genome.Annotation_was_added_to_the_contigs_in_June_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_55.6xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 30-JUN-2010 Escherichia_coli_MS_196-1_E_coli196-1-1.0_Cont583.2,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8BTT2_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296507710 Submitted_(20-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADUD01000138 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1359 NA genomic_DNA NA MS_196-1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749548 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUD01000138.1 ATGGAACAATATGATCAAATTGGCGCAAGACTGGACCGCTTGCCTTTGGCCCGGTTTCATTATCGTATATTTGGTATTATAAGCTTTAGTCTGTTATTAACAGGGTTTTTGAGTTACTCCGGTAATGTCGTCTTAGCAAAGCTGGTAAGCAATGGATGGTCAAATAATTTCCTCAATGCCGCCTTTACCTCGGCATTAATGTTTGGTTATTTCATCGGCTCACTTACTGGTGGGTTTATTGGTGACTACTTTGGGCGGCGCAGGGCGTTTCGCATAAATCTTCTCATCGTCGGTATTGCTGCAACAGGGGCCGCTTTTGTCCCTGATATGTACTGGCTCATCTTCTTTCGCTTCCTGATGGGAACAGGAATGGGGGCGCTGATTATGGTTGGCTATGCCTCATTTACGGAGTTTATCCCCGCGACGGTGCGTGGAAAATGGTCCGCGCGGCTCTCATTTGTTGGTAACTGGTCGCCCATGCTGTCTGCGGCGATAGGCGTGGTGGTTATCGCTTTTTTTAGTTGGCGAATAATGTTTCTGCTGGGTGGTATTGGCATACTGTTAGCCTGGTTTCTCTCAGGTAAATACTTTATCGAGTCGCCACGATGGCTGGCAGGGAAAGGGCAAATCGCAGGTGCAGAATGCCAACTTCGTGAAGTAGAGCAGCAAATTGAAAGAGAGAAGAGTATTCGTTTACCCCCGCTTACTTCGTATCAGAGCAACAGCAAGGTTAAAGTAATCAAGGGTACTTTCTGGCTCCTGTTTAAAGGTGAAATGTTACGACGTACATTAGTCGCGATTACTGTTTTAATTGCAATGAACATTTCGCTTTATACCATCACCGTATGGATACCGACCATATTTGTTAACTCCGGCATTGATGTCGATAAATCAATATTAATGACCGCTGTTATTATGATTGGCGCTCCGGTAGGAATATTTATTGCGGCATTAATTATTGATCATTTTCCTCGTCGGTTATTTGGCTCCACCTTACTTATTATTATTGCCGTGTTAGGCTATATCTATTCAATTCAGACTACAGAGTGGGCGATTTTAATCTATGGACTGGTGATGATCTTCTTTTTATACATGTATGTTTGCTTCGCGTCGGCGGTTTATATCCCGGAGCTTTGGCCAACGCATTTACGCCTGCGCGGTTCGGGTTTCGTTAATGCCGTCGGACGGATCGTCGCAGTCTTCACGCCCTATGGCGTTGCGGCATTATTAACACATTATGGGTCGATCACGGTGTTTATGGTACTTGGTGTCATGTTATTGCTCTGTGCGCTGGTTCTCTCCATTTTTGGCATCGAAACGCGGAAGGTGTCGTTGGAAGAGATTTCTGAGGTGAATTAA > 532 HMPREF9551_01347 KEGG:_ach:Achl_0944_4.3e-17_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 conserved_hypothetical_protein EFI89605.1 11 MANDSWSGQDKAQHFIASAMLSAAGNEYSQHQGMSRDRSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGASPGYTVWQLTRH gamma_subgroup Escherichia_coli_MS_196-1 Escherichia_coli_MS_196-1 ADUD01000174 350..1648 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 1295:>1299 Escherichia_coli_196-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_196-1_genome.Annotation_was_added_to_the_contigs_in_June_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_55.6xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 30-JUN-2010 Escherichia_coli_MS_196-1_E_coli196-1-1.0_Cont735.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8BUP0_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296507674 Submitted_(20-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADUD01000174 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1299 NA genomic_DNA NA MS_196-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749548 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUD01000174.1 ATGGCTGAAAGTACTGTAACGGCAGACAGCAAACTGACAAGTAGTGATACTCGTCGCCGCATTTGGGCGATTGTGGGGGCCTCTTCAGGTAATCTGGTCGAGTGGTTCGATTTCTATGTCTACTCGTTCTGTTCACTCTACTTTGCCCACATCTTCTTCCCTTCCGGGAACACGACGACTCAACTACTACAAACAGCAGGTGTTTTTGCTGCGGGATTCCTGATGCGCCCAATAGGCGGTTGGCTATTTGGCCGCATAGCCGATAAACATGGTCGCAAAAAATCGATGCTGTTATCGGTGTGTATGATGTGTTTCGGATCGCTGGTTATCGCCTGCCTCCCAGGTTATGAAACTATAGGTACGTGGGCTCCGGCATTATTGCTTCTCGCTCGTTTATTTCAGGGATTATCTGTTGGCGGAGAATATGGCACCAGCGCCACCTATATGAGTGAAGTTGCCGTTGAAGGGCGCAAAGGTTTTTACGCATCATTTCAGTATGTGACGTTGATCGGCGGACAACTGCTAGCCCTACTGGTTGTCGTGGTTTTACAACACACCATGGAAGACGCTGCACTCAGAGAGTGGGGATGGCGTATTCCTTTCGCGTTAGGAGCTGTGTTAGCTGTTGTGGCGTTGTGGTTACGTCGTCAGTTAGATGAAACTTCGCAACAAGAAACGCGCGCTTTAAAAGAAGCTGGATCTCTGAAAGGATTATGGCGCAATCGCCGTGCATTCATCATGGTTCTCGGTTTTACCGCTGCGGGCTCCCTTTGTTTCTATACCTTCACTACTTATATGCAGAAGTATCTGGTAAATACTGCGGGAATGCATGCCAACGTGGCGAGTGGCATTATGACTGCCGCATTGTTTGTATTCATGCTTATTCAACCACTCATTGGCGCGCTGTCGGATAAGATTGGTCGCCGTACCTCAATGTTATGTTTCGGTTCGCTGGCAGCCATTTTTACCGTTCCTATTCTCTCAGCATTGCAAAACGTTTCCTCGCCTTATGCCGCTTTTGGTCTGGTGATGTGTGCCCTGCTGATAGTGAGTTTTTATACATCAATCAGTGGAATACTGAAGGCTGAGATGTTCCCGGCACAGGTTCGCGCATTAGGCGTTGGTCTGTCATATGCGGTCGCTAATGCTATATTTGGTGGTTCGGCGGAGTACGTAGCGTTGTCGCTGAAATCAATAGGAATGGAAACAGCCTTCTTCTGGTATGTGACCTTGATGGCCGTGGTGGCGTTTCTGGTTTCTTTGATGCTACATCGCAAAGGGAAGGGGATGCGTCTTTAG > 533 HMPREF9551_03663 KEGG:_ecl:EcolC_0771_1.9e-244_sugar_transporter_K08137;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_sugar_porter_family_protein EFI87343.1 11 MPDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTSAEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERNLMKGRKLREIGAHD gamma_subgroup Escherichia_coli_MS_196-1 Escherichia_coli_MS_196-1 ADUD01000426 36..1430 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1395 Escherichia_coli_196-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_196-1_genome.Annotation_was_added_to_the_contigs_in_June_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_55.6xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 30-JUN-2010 Escherichia_coli_MS_196-1_E_coli196-1-1.0_Cont1229.4,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8C150_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296507422 Submitted_(20-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADUD01000426 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1395 NA genomic_DNA NA MS_196-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749548 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUD01000426.1 TTAATCGTGAGCGCCGATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACGTGTTTGGTTTCCGGTACCAGCCACAATGTCAGCAAGATAAACAGTACGTTCAGAGCCGCATACACCCAGAAGGTGTTAGCGTTACCCAGCGTGTTGAGCATGGTCAGGAACGTTGCGCCAACGATCATGTTGGCAATCCAGTTGGTGGCGGTGGAGCAGGTGATGCCAAAATCGCGGCCTTTCAGCGGCTGAATTTCGGAGCACAGTACCCAAATCAGCGGACCGGCACTCATGGCAAAACCGACAATAAACATCAGCAGCATGGCGATAGCGAAATACTGCGCCGACGGAGAGTGGATACCGATATGCATCATTGTACCGAGTACGCCCATGCCAGCAGCCATCACCAGGAAGCCCAGCGTTAGCGTTGGTTTACGTCCCCAGCGGTCAACAAGGCCGATTGCGATAAAGGTGGCGAGTACGTTAGTCAGGCCGACGATCACCGTCCCCCACATTTGCTCGGTAGTGTTGGTATAACCCGCCAGTTCGAAGATTTTCGGCGCGTAATACATGATGACGTTCATCCCAGTGAATTGCTGCATTACCTGCAACAGTACGCCAAGGAACACCGCGCGGCGGAAGTTGCTGTTCTCTTTAAACAGCGCCCAGCCACTCTGTTTAACCTGCAAACTTTCACGGATTTCATCCAGTTCACGTTTCGCTTCCGCGCTGGTGTCACGCAGGCGCAGCAGCACGCGTTCGGCATCAACAAAACGGCGTTTGGCGGCAAACCAACGAGGGCTGTCTGGCAGGAAGAAGACACCAATCAGCAGCAAAATTGCCGGGATGATAATCACACCCAGCATCCAGCGCCATGCACCGGTGTAGCTGAAGGCGGTATCAGAAAGATAAGCACCGAGGATCCCGATAGTGATCATCAACTGATACATCGAGATCATACTGCCGCGAATTTTTTCCGGCGCAATTTCAGAGAGGTACAGTGGTGCGGTATAAGAGGCCACACCCACCGCCAGCCCCAGCAGAACGCGGGAAAGAATCAGTACTTCAACGTTTGGCGCAGCCGCAGAGAACAGTGAACCGGCAACAAACAAAATTGCGCCGATCATCAGGCTCTTTTTGCGCCCGAGTTTAAAGGAGAGCCAGCCGCTGCCCACCGCACCGACTGCCGCACCGAACATCATGGAGCTTACGACCCATTCTTGCGTGTGCGAAGTAATCTGAAATTCATCTGCAATAAACGGCAGTGCGCCAGCAATTACACCGATATCCAGGCCAAAGAGTAATCCCGCCAGAGCGGCAAGGAAGCAGACGAAAAACGTCATTGCCTTGTTTGACCGCCCCTGTTTTTTAGCGTCAGGCAT > 534 HMPREF9549_00787 KEGG:_spe:Spro_4664_2.7e-20_sugar_transporter_K08070;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFJ57756.1 11 MSQITSPATYSISRPQDVIDIVNKNSAINTSIGVIFIALGGILIDAYQAAMVGFGNKYIAAQFGISPGLAATVNASVLIAALIGGLLANRVINRFGQKRAFIIGMGLCTIGAAAVAIAPSIWWVLVCRVIMGFGLGIDFPLATNAVAELRGSTSKKTGTSVNLWQMAWYVSTTVVYLVLLPLLLSGIAEEQLWRYGIFIGAIFAVIFMILRYFFIGESAMWAARVGRYQEACDILGKRYGVQARVAASGTTEAKFSEKAENKYSGGYGILFNDRYRKRTILGCVVATMQAWQYNAVGVYLPLTLAGIISGGLTGALTGSAVVNALCGVTGGMIGSFILQRLGTRRQSMYGFAVVTLALLSLGALATTNPWLSLGLLGSIIFFHSAGPGGLGMTIATLSYPPAIRPTGVGFARAIMRTGAIAGLIFWPMLWGALKTEAFYWLAIVPFLGFLTCVLINWEPLGANVDAEDAEVLAELKK gamma_subgroup Escherichia_coli_MS_185-1 Escherichia_coli_MS_185-1 ADUE01000061 8122..9555 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1434 Escherichia_coli_185-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_185-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_60.4xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 08-JUL-2010 Escherichia_coli_MS_185-1_E_coli185-1-1.0_Cont176.4,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8C923_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296500776 Submitted_(14-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADUE01000061 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1434 NA genomic_DNA NA MS_185-1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749546 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUE01000061.1 ATGAGTCAAATCACCAGTCCTGCAACTTATTCAATTAGTCGGCCACAGGACGTAATTGATATTGTTAATAAGAACTCTGCAATCAACACCAGTATCGGCGTTATTTTTATTGCTTTGGGCGGCATATTGATTGATGCCTACCAGGCGGCGATGGTGGGGTTTGGTAATAAATACATTGCCGCTCAATTCGGCATTTCGCCGGGTCTTGCTGCAACCGTCAATGCATCAGTATTAATCGCCGCGTTAATTGGCGGTTTATTAGCGAACCGAGTAATAAACCGCTTTGGGCAAAAGCGGGCATTTATTATTGGCATGGGGCTGTGCACCATCGGTGCTGCAGCGGTAGCTATTGCTCCCAGTATCTGGTGGGTGCTGGTGTGCCGCGTCATCATGGGCTTTGGTTTAGGCATCGACTTCCCTTTGGCAACCAATGCCGTGGCAGAGCTTCGTGGTTCAACGTCGAAGAAAACCGGCACGTCGGTCAACCTCTGGCAAATGGCCTGGTATGTTTCGACAACCGTTGTTTATTTGGTGCTTTTGCCGCTGCTTCTGTCGGGTATCGCTGAAGAACAATTGTGGCGTTACGGAATATTCATCGGAGCTATTTTTGCAGTCATCTTCATGATTTTGCGTTACTTCTTTATTGGTGAATCCGCAATGTGGGCCGCACGCGTCGGGCGTTACCAGGAAGCGTGCGACATTCTGGGAAAACGTTATGGTGTTCAGGCTCGCGTTGCGGCATCGGGTACAACAGAAGCGAAATTCTCGGAAAAAGCAGAGAATAAATACAGTGGTGGATATGGCATCTTATTTAATGATCGTTACCGCAAACGCACCATTCTTGGCTGTGTCGTGGCAACCATGCAGGCGTGGCAATATAACGCCGTAGGTGTTTATCTTCCTCTTACGTTGGCGGGAATAATAAGTGGCGGGCTTACTGGCGCGTTAACCGGTTCTGCCGTCGTGAATGCCCTTTGTGGGGTGACAGGCGGGATGATCGGCTCGTTTATTCTCCAACGACTGGGTACTCGCCGACAGTCGATGTATGGATTTGCTGTTGTGACCTTAGCATTGCTGTCGTTAGGCGCACTGGCAACGACTAATCCCTGGCTGTCTTTAGGGTTATTGGGATCAATTATTTTCTTCCATTCAGCGGGTCCTGGTGGGCTGGGCATGACCATTGCCACACTCTCTTATCCTCCCGCTATTCGCCCTACTGGGGTCGGATTTGCCCGCGCTATTATGCGCACAGGGGCAATTGCAGGACTCATTTTCTGGCCGATGCTGTGGGGTGCGTTGAAAACTGAAGCGTTTTACTGGTTGGCAATCGTGCCATTCCTGGGATTCCTGACCTGTGTATTGATTAATTGGGAACCACTGGGTGCAAATGTTGATGCTGAGGACGCAGAGGTTCTGGCTGAATTGAAGAAATAA > 535 HMPREF9549_04126 KEGG:_rcm:A1E_04550_8.9e-11_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_metabolite:H+_symporter_family_protein EFJ54497.1 11 MTIEKHERSTKDLVKAAVSGWLGTALEFMDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPHVVRAAQPSRSL gamma_subgroup Escherichia_coli_MS_185-1 Escherichia_coli_MS_185-1 ADUE01000293 19967..21334 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1368 Escherichia_coli_185-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_185-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_60.4xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 08-JUL-2010 Escherichia_coli_MS_185-1_E_coli185-1-1.0_Cont952.10,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8CIE4_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296500544 Submitted_(14-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADUE01000293 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1368 NA genomic_DNA NA MS_185-1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749546 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUE01000293.1 ATGACAATAGAAAAACACGAAAGAAGTACTAAGGATTTGGTGAAAGCAGCAGTATCGGGATGGTTGGGCACTGCGCTTGAATTTATGGACTTCCAGTTATATTCGCTCGGCGCAGCGTTAGTGTTTCATGAAATATTTTTTCCTGAATCATCAACGGCAATGGCGTTAATTCTGGCAATGGGAACCTATGGTGCAGGTTATGTGGCACGTATTGTCGGAGCATTTATTTTCGGCAAAATGGGCGACAGAATAGGGCGTAAAAAAGTGCTCTTTATTACCATCACCATGATGGGGATCTGTACCACCTTAATTGGTGTGTTACCGACTTATGCACAAATTGGTGTTTTTGCCCCCATCTTGCTGGTGACGCTGCGTATTATTCAGGGGTTGGGTGCAGGTGCGGAAATTTCCGGTGCCGGTACGATGCTGGCGGAATATGCGCCAAAAGGTAAGCGCGGAATTATCTCCTCATTTGTGGCTATGGGAACTAACTGCGGAACCTTGAGCGCAACGGCAATCTGGGCCTTTATGTTCTTCATTCTCAGTAAAGAGGAACTGCTGGCGTGGGGATGGCGTATACCTTTCCTGGCGAGCGTTGTCGTGATGGTCTTTGCTATCTGGTTGCGTATGAATCTGAAAGAAAGCCCGGTCTTTGAGAAGGTTAACGACAGCAACCAACCGACAGCAAAACCTGCACCTGCTGGTAGCATGTTCCAGAGCAAATCCTTCTGGCTGGCAACAGGGCTGCGTTTTGGTCAGGCTGGTAACTCAGGTTTAATTCAGACTTTCCTTGCAGGCTATTTAGTGCAGACGTTATTGTTTAACAAAGCAATTCCAACAGATGCATTGATGATCAGTTCGATTCTCGGCTTTATGACCATTCCGTTCCTTGGTTGGTTATCCGATAAAATTGGTCGCCGGATCCCGTATATTATTATGAATACCTCTGCGATTGTGCTGGCGTGGCCAATGCTTTCTATCATCGTAGATAAAAGCTATGCCCCGAGCACCATTATGGTTGCACTGATTGTGATTCATAACTGTGCGGTGCTGGGATTATTTGCTCTGGAAAACATTACCATGGCAGAAATGTTCGGCTGTAAAAACCGCTTTACCCGAATGGCTATTTCTAAAGAAATTGGTGGTCTTATCGCTTCCGGTTTTGGTCCTATCCTGGCGGGGATTTTCTGCACCATGACGGAATCCTGGTATCCGATCGCCATTATGATCATGGCATATTCTGTGATTGGTTTAATCTCTGCGCTGAAAATGCCAGAAGTGAAAGACCGTGATTTAAGTGCGCTGGAAGACGCCGCAGAAGATCAACCACATGTTGTAAGAGCTGCGCAACCGTCCAGAAGTCTGTAA > 536 HMPREF9549_04792 KEGG:_lre:Lreu_0479_1.8e-20_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFJ53855.1 11 MMIKMRQVNLPQLLPFLANPRHPMEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVVLAKLVSNGWSNNFLNAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMHWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFLLGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAESQLREVEQQIEREKSIRLPPLTLNQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSALLIIIAVLGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFMVLGVMLVLCALVLSIFGIETRKVSLEEISEVN gamma_subgroup Escherichia_coli_MS_185-1 Escherichia_coli_MS_185-1 ADUE01000336 27219..28646 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1428 Escherichia_coli_185-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_185-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_60.4xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 08-JUL-2010 Escherichia_coli_MS_185-1_E_coli185-1-1.0_Cont1233.15,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8CK97_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296500501 Submitted_(14-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADUE01000336 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1428 NA genomic_DNA NA MS_185-1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749546 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUE01000336.1 ATGATGATAAAGATGCGGCAAGTGAATTTGCCGCAATTGCTACCTTTTTTAGCAAATCCGAGGCACCCAATGGAACAATATGATCAAATTGGCGCAAGACTGGACCGCTTGCCTTTGGCCCGGTTTCATTATCGTATATTTGGTATAATAAGCTTTAGTCTGTTATTAACGGGTTTTTTGAGTTACTCCGGTAATGTCGTCTTAGCAAAGCTGGTAAGCAATGGATGGTCAAATAATTTCCTCAATGCCGCCTTTACCTCGGCATTAATGTTTGGTTATTTCATCGGCTCTCTTACCGGTGGGTTTATTGGTGACTACTTTGGGCGGCGCAGGGCGTTTCGCATAAATCTTCTCATCGTCGGTATTGCGGCAACAGGGGCCGCTTTTGTCCCTGATATGCACTGGCTCATCTTCTTTCGCTTCCTGATGGGAACAGGAATGGGGGCGCTGATTATGGTTGGCTATGCCTCATTTACGGAGTTTATCCCCGCGACGGTGCGTGGAAAATGGTCCGCGCGGCTCTCATTTGTTGGTAACTGGTCGCCCATGCTCTCTGCGGCGATAGGCGTGGTGGTTATCGCTTTTTTTAGTTGGCGGATAATGTTTCTGCTGGGCGGTATTGGCATACTGTTAGCGTGGTTTCTCTCAGGTAAATACTTTATTGAGTCGCCACGATGGCTGGCAGGGAAAGGGCAAATCGCAGGTGCAGAAAGCCAACTTCGTGAAGTAGAGCAGCAAATTGAAAGAGAGAAGAGTATTCGTTTACCCCCGCTTACTTTGAACCAGAGCAACAGCAAGGTTAAGGTAATCAAGGGTACCTTCTGGCTCCTGTTTAAAGGGGAAATGTTACGACGTACATTAGTCGCGATTACTGTTTTAATTGCAATGAACATTTCGCTTTATACCATCACCGTATGGATACCGACCATATTTGTTAACTCCGGCATTGATGTTGATAAATCAATATTAATGACCGCTGTTATTATGATTGGCGCTCCGGTAGGGATATTTATTGCGGCATTAATTATTGATCATTTTCCTCGTCGATTATTTGGCTCTGCCTTACTTATTATTATTGCTGTGTTAGGCTATATCTATTCAATTCAGACTACAGAGTGGGCGATTTTAATCTATGGCCTGGTGATGATCTTCTTTTTATACATGTATGTGTGCTTCGCGTCGGCGGTTTATATCCCGGAACTTTGGCCAACGCATTTACGCCTGCGTGGTTCGGGTTTCGTTAATGCCGTCGGACGGATCGTCGCAGTCTTCACGCCCTATGGCGTTGCGGCATTATTAACACATTATGGGTCGATCACGGTGTTTATGGTGCTTGGTGTCATGTTAGTGCTCTGTGCGCTGGTTCTCTCCATTTTTGGCATCGAAACGCGGAAGGTGTCGCTGGAAGAGATTTCTGAGGTGAATTAA > 537 HMPREF9346_03403 KEGG:_rcm:A1E_04550_8.0e-09_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_metabolite:H+_symporter_family_protein EFK45075.1 11 MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL gamma_subgroup Escherichia_coli_MS_119-7 Escherichia_coli_MS_119-7 ADWU01000024 70714..71997 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1284 Escherichia_coli_119-7_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_Improved_High-Quality_DraftCurrent_Finishing_Status_::_Improved_High-Quality_DraftAssembly_Method_::_Newbler_Assembler_v._2.1-PreRelease-4/28/2009Genome_Coverage_::_12.2xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 14-JUL-2010 Escherichia_coli_MS_119-7_E_coliMS119-7-1.0.1_Cont23.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8EA60_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 299877129 Submitted_(21-JUN-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADWU01000024 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1284 NA genomic_DNA NA MS_119-7 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 679206 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADWU01000024.1 TTACAGACTTCTGGAAGGTTGCGCAGCTCTTACAACACGCGGTTGATCTTCCGCAGCGTCTTCCAGCGCACTTAAATCACGGTCTTTCACCTCTGGCATTTTCAGCGCAGAGATTAAACCAATTACTGAATATGCCATGATCATAATGGCGATCGGATACCAGGATTCCGTCATGGTGCAGAAAATACCCGCCAGGATAGGACCAAAACCGGAAGCGATAAGACCACCAATTTCTTTTGAAATAGCCATCCGGGTAAAGCGGTTTTTACAGCCGAACATTTCTGCCATGGTAATGTTTTCCAGAGCAAATAATCCCAGCACCGCACAGTTATGAATCACAATCAGTGCAACCATAATGGTGCTCGGGGCATAGCTTTTATCTACGATGATAGAAAGCATTGGCCACGCCAGCACAATCGCAGAGGTATTCATAATAATATACGGGATCCGGCGACCAATTTTATCGGATAACCAACCAAGGAACGGAATGGTCATAAAGCCGAGAATCGAACTGATCATCAATGCATCTGTTGGAATTGCTTTGTTAAACAATAACGTCTGTACTAAATAGCCTGCAAGGAAAGTCTGAATTAAACCGGAGTTACCCGCCTGACCAAAACGCAGCCCTGTTGCCAGCCAGAAGGATTTGCTCTGGAACATGCTACCAGCAGGTGCAGGTTTTGCTGTCGGTTGGTTGCTGTCGTTAACCTTCTCAAAGACCGGGCTTTCTTTCAGATTCATACGCAACCAGATAGCAAAGACCATCACGACAACGCTCGCCAGGAACGGTATACGCCATCCCCACGCCAGCAGTTCCTCTTTACTGAGAATGAAGAACATAAAGGCCCAGATTGCCGTTGCGCTTAAGGTTCCGCAGTTAGTTCCCATAGCCACAAATGAGGAGATAATTCCGCGCTTACCTTTTGGCGCATATTCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAATCCCTGAATAATACGCAGCGTCACCAGCAAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACTCCAATTAAGGTGGTACAGATCCCCATCATGGTGATGGTAATAAAGAGCACTTTTTTACGCCCTATTCTGTCGCCCATTTTGCCGAAAATAAATGCTCCGACAATACGCGCCACATAACCTGCACCATAGGTTCCCATTGCCAGAATTAACGCCATTGCCGTTGATGATTCAGGAAAAAATATTTCATGAAACACTAACGCTGCGCCGAGCGAATATAACTGGAAATCCAT > 538 HMPREF9345_03109 KEGG:_rcm:A1E_04550_9.7e-23_tdk;_thymidylate_kinase MFS_transporter,_metabolite:H+_symporter_family_protein EFK50502.1 11 MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYDNIEQKIDNIDHEIADLQAKRTRLVQQHPRIDE gamma_subgroup Escherichia_coli_MS_107-1 Escherichia_coli_MS_107-1 ADWV01000013 98287..99789 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1503 Escherichia_coli_107-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_Improved_High-Quality_DraftCurrent_Finishing_Status_::_Improved_High-Quality_DraftAssembly_Method_::_Velvet_v._2.1-PreRelease-4/28/2009Genome_Coverage_::_11.1xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 14-JUL-2010 Escherichia_coli_MS_107-1_E_coliMS107-1-1.0.1_Cont12.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8EPL1_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 299856438 Submitted_(21-JUN-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADWV01000013 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1503 NA genomic_DNA NA MS_107-1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 679207 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADWV01000013.1 ATGCTGAAAAGGAAAAAAGTAAAACCGATTACCCTTCGTGATGTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTTGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGGGGCTGACCCCAGCGTGCAGATGGTTGCTGCACTTGCCACGTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCACTATTGTGATTATGTCGATCAGTACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTGAATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGCTTTATGGGCAGCTGGCTGGACTTTGGTTCTATTGCCGGGTTTGTGCTGGGTGCTGGCGTAGTGGTGTTAATTTCGACCATTGTCGGCGAAGCGAACTTCCTCGACTGGGGCTGGCGTATTCCGTTCTTTATTGCTCTGCCGTTAGGGATTATCGGGCTTTACCTGCGCCATGCGCTGGAAGAAACTCCGGCGTTCCAGCAGCATGTCGATAAACTGGAACAGGGCGACCGCGAAGGTTTGCAGGATGGCCCGAAAGTCTCGTTTAAAGAGATTGCCACCAAACACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCACGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCTGTTTGTGTTGGCGATCCCGGCGTTTATTCTGATTAACAGTAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTACGGGCGTTATGGCTTCTACCTTGCCAGCGATGTTCCCGACGCATATCCGTTACAGCGCGCTGGCGGCGGCATTTAATATTTCGGTGCTGGTTGCCGGTCTGACGCCAACACTGGCGGCCTGGCTGGTCGAAAGCTCGCAGAATCTGATGATGCCTGCCTATTACCTGATGGTAGTGGCGGTGATTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATAATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAA > 539 HMPREF9345_03679 KEGG:_rcm:A1E_04550_1.5e-15_tdk;_thymidylate_kinase MFS_transporter,_metabolite:H+_symporter_family_protein EFK49832.1 11 MDSTLISTRPDEGTLSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLGALWVRNGMEESAEFEQQQHYQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGTLIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALITYFAGNWHSVAIYLLAGCLISAMTALLMKDSQRA gamma_subgroup Escherichia_coli_MS_107-1 Escherichia_coli_MS_107-1 ADWV01000018 31117..32433 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1317 Escherichia_coli_107-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_Improved_High-Quality_DraftCurrent_Finishing_Status_::_Improved_High-Quality_DraftAssembly_Method_::_Velvet_v._2.1-PreRelease-4/28/2009Genome_Coverage_::_11.1xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 14-JUL-2010 Escherichia_coli_MS_107-1_E_coliMS107-1-1.0.1_Cont17.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_D8ER74_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 299856433 Submitted_(21-JUN-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADWV01000018 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1317 NA genomic_DNA NA MS_107-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 679207 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADWV01000018.1 TCAAGCGCGTTGACTGTCTTTCATCAACAAAGCGGTCATTGCGGAAATCAGGCATCCAGCCAGCAAATAAATGGCGACGCTATGCCAGTTCCCGGCAAAGTAAGTGATGAGTGCAGCGGCAATAAAAGGTGTAAATCCACCGCCAACCACACTGGCAACCTGATAACCGACTCCAGCGCCACTATAGCGATAACTGGCACCAAACATTTCGGTAAACATCGGTTGTTGCACACACACCACCATGTCATGCGCAATGTTTGCCAGCATTATGGAGAAGAAAACTATCCAGAAAATAGATTGTGCTTCAAGCGCCATAAAGAAAGGAAATGCGCTCAACGTTCCGATTAACGTACCTGTGATATAAACCCTACGGCGACCAAAACGATCGGCAAGCCAGGCAAAACAGGGAATTGTCAGGCAGCTTAATCCACCTACCAGCAAACCAATATTAAGGAAAAGTTCGCGCGGTAGCCCCATATTCTGGGTTGAATAATTAAGTGCAAAGGCAGTAACGATGTACATCGTCAGCAATTCGCACAGTCGTAGCGCAATAATCTTCAGGAAAGCACCGGGATGTCGTAACAGCGCTTCGATAACCGGGATGCGTTTTTTCGCGGCAGCTTGATAATGTTGCTGTTGTTCAAATTCCGCGGACTCCTCCATGCCATTGCGCACCCACAATGCTCCCAGTACCAGTACGATGCTAAACAGGAAAGGAATGCGCCAGCCCCAGCTTAAAAACTGTTCGTCAGTCGTCATCATACTGATCAATGAAACCAGTCCGGTTGAAAGCAGTAAACCTACACCGTAGCCAACTTGTACACCGCTACTGTAAAAGGCTTTTTTATTTTTCGGTGCACTTTCAACGGAAAGCAACGCCGCGCCTCCCCATTCGCCGCCGACTGCAAATCCCTGAATGGCACGCAGTGTCACCAGCAAAATAGGTGCCCACCACCCAATGGTCGAGAATGAAGGAAGAATACCAATCAAGGCTGTCGCGATGCCCATCATCCAGACGGTCAGCATTAACATGCGCTTACGTCCCAGTCGGTCGCCAAAGTGACCGAAAATGACACCGCCGAGCGGACGGAAAAGAAATCCGACGCCAAAGGTAGCAAATGCGGCGAGCGTTCCCATCGCCGGGCTTACTTGCGGGAAAAACTCGCGATTAAACACCAGTGCGGCGGTGATGCCATAGAGTAAAAAATCATACCAGTCGACGACGGCACCAGCGAAGCTGCCTAACGCAGCTCGTCGGGCGCGACTTAACGAAAGCGTCCCTTCATCGGGACGAGTGGAGATGAGCGTGGAGTCCAT > 540 EschWDRAFT_1538 PFAM:_major_facilitator_superfamily_MFS_1;_KEGG:_eoj:ECO26_0046_putative_transporter major_facilitator_superfamily_MFS_1 EFN38978.1 11 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG gamma_subgroup Escherichia_coli_W Escherichia_coli_W AEDF01000005 173807..175138 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Land,M.L.,_Hauser,L.,_Chang,Y.-J.,_Jeffries,C.,_Tremaine,M.,_Landick,R.,_Keating,D._and_Woyke,T.J. NA 0:1332 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4087071Source_DNA_and_Organism_available_from_David_Keating(dkeating@glbrc.wisc.edu)Contacts:_David_Keating_(dkeating@glbrc.wisc.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Escherichia_coli_Wcollection_date_::_Missinglat_lon_::_Missingdepth_::_Missingalt_elev_::_Missingcountry_::_Missingenvironment_::_Missingnum_replicons_::_Missingref_biomaterial_::_ATCC_9637biotic_relationship_::_Missingtrophic_level_::_Missingrel_to_oxygen_::_Facultativeisol_growth_condt_::_Missingsequencing_meth_::_WGSassembly_::_Newbler_v._2.3finishing_strategy_::_FinishedGOLD_Stamp_ID_::_Gi06929Cell_Shape_::_Rod-shapedMotility_::_MotileTemperature_Range_::_MesophileGram_Staining_::_Gram-##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_42xSequencing_Technology_::_454/Illumina##Genome-Assembly-Data-END## NA 13-SEP-2010 Escherichia_coli_W_ctg00046,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E0IYY1_ECOLW.gb Escherichia_Castellani_and_Chalmers_1919 306908329 Unpublished NA AEDF01000005 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1332 NA genomic_DNA NA W NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 566546 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_draft_genome_of_Escherichia_coli_W NA AEDF01000005.1 TTACCCCATTCTCTGCCCGCGGATCGTCATATTGCTGGTTTGCGCCAGTGACATCCCTCGAGTCTCCGGGGCAAACGCTACGGAAATCAACAAGCCAAACAGCGAGATACCCGCCCCCATTAGCATCGTGTTACTGATACCGTAATTATTGATAAAGATCGGCAGTGCCCAGGTCGAAACAATGGTGCCAATACGGCTTAAGGACATAATCACGCCCACGGCAGAGGCGCGGATATCTGTCGGGAAGAGTTCATTAGGATAGAGCCACTGCAAATTACCCGGCCCGCCAGAGAAAAAGGCATACACCGCAAAGGCCATCACTACCAGCCAGATCCCCATATCCGGGATCAGCCCCAAAACCGCCAGCGCCAGCGTCATCATGGCAAAGCTGCCAATCAACAATGGACGCCGTCCGGCAGTGTTTAACCACAGCATCGGCGGAATACAGCCGAGCATAAAGAACAGGCTAATCACCACGTTCCCCAGCGCCGCGTTTTTGCCAACACCCAATCCCAACAAACCAACGATTTGCGGGCCAAAGGTGTAAATGGCGAACATTGGGATCACCTGGCAGGTCCAGATGGCGGCAACAAACAGAACAAAAGGAAAATGGCGGCGATTAAACAGATCGCGAAAACGGGTTTGCTGCGGTTGCTCTTCATCGAAAGCCACCGGTTCGCCAAACAGTTTTATCATCATCTCTTCGCACTCTTTTACTCGCCCTTTGCGTAATAACCAGCGGGGAGATTCAGGCAGTTCGAATCGACCAATCAAAATCAACAAACAGGGGATCGCCGCGCTACCCAGCATCCAGCGCCAGCCGCCTTCCACATCATAAAGCCAGTAGCCGACCAGATCGGCGCAGGTCGCGCCGACATACCACATGGCGGCGATAAAGCTGATGGAAAACGCCCGCTGACGGGTACTGGAGAACTCGGTGATCATTGAGGTGGCGATGGGATAATCTGCACCGATGACAATGCCGATAAGTACCCGCATCACCAACAGTTCGACGGGGGATGAAACAAACATCGTCGCCACCGATATCACGCCGATGGCGATGATATCAATGAGGAACATTTTGCGCCGTCCGACTTTATCGGAAATATAGCCAAACAGCGATGTGCCAACGAACAGCCCGGCGAGCGTTCCCGCGCCCAACAAGCCAATCCAGTCAGCGTCCAGTTTTAGCGCCGGAGTCAGTTGCTCCAGCGCCACGCCAATCATTACCAGTACATAACCATCCAGAAACGGACCACCGCTTCCCCACAGCAAAATGCGGCGGTGAATTGAGGAGAATTTGAGATCGTCAAAGTTTCTGGACGGTTGCAT > 541 HMPREF9543_00025 Psort_location:_CytoplasmicMembrane,_score:_9.27 electron_transfer_flavoprotein EFK93073.1 11 MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP gamma_subgroup Escherichia_coli_MS_146-1 Escherichia_coli_MS_146-1 ADTN01000003 6205..7614 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 1387:>1410 Escherichia_coli_146-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_146-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_64.3xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 22-JUL-2010 Escherichia_coli_MS_146-1_E_coli146-1-1.0_Cont7.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E1HG76_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296494735 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTN01000003 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1410 NA genomic_DNA NA MS_146-1 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749540 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTN01000003.1 ATGACGGGGCGTTGCCTTTTCGGCTTCTCAGGCGAGAAGCCGTTCTTATTACCGGACAATGAAGGGGTAAAGATGAACACTTCACCGGTGCGAATGGATGATTTACCGCTTAACCGTTTTCACTGCCGCATTGCTGCGCTCACTTTCGGCGCACACCTGACCGACGGTTATGTTCTCGGCGTCATTGGTTACGCCATTATTCAGCTTACGCCCGCCATGCAACTGACGCCGTTTATGGCGGGAATGATCGGCGGCTCGGCGCTCCTTGGTTTGTTCCTTGGCAGCCTGGTTCTTGGGTGGATCTCCGACCATATTGGTCGGCAAAAAATCTTCACCTTCAGCTTTTTGCTGATTACGCTTGCTTCGTTTTTACAATTTTTTGCCACCACGCCAGAGCATCTTATTGGACTGCGCATTTTGATTGGCATTGGTCTGGGAGGCGATTATTCAGTAGGTCACACCTTGCTGGCTGAATTTTCCCCGCGCCGCCATCGCGGTATTTTGCTGGGCGCATTCAGCGTGGTGTGGACCGTAGGCTATGTGCTGGCAAGTATTGCCGGACATCACTTTATTTCCGAAAACCCGGAGGCCTGGCGCTGGCTACTGGCATCGGCAGCTCTGCCCGCGTTGTTGATTACGTTATTACGCTGGGGAACGCCAGAATCACCACGCTGGCTACTGCGCCAGGGGCGTTTTGCAGAAGCTCACGCTATCGTGCATCGCTATTTTGGTCCCCATGTTTTACTGGGCGATGAAGTGGTAACGGCGACCCATAAACACATCAAAACCTTGTTCTCTTCGCGTTACTGGCGGCGCACGGCGTTTAACAGCGTCTTCTTTGTCTGCCTCGTAATCCCATGGTTTGTGATTTATACCTGGCTGCCAACTATCGCCCAGACTATTGGTCTGGAAGATGCGCTGACTGCCAGCCTGATGCTTAATGCGTTGTTAATTGTGGGCGCGCTGCTGGGATTAGTTCTGACGCACCTGCTGGCACATCGCAAATTTTTGCTGGGAAGTTTTTTGCTGCTGGCGGCAACGCTGGTAGTCATGGCCTGTTTGCCTTCCGGCAGTTCATTAACGCTGCTGCTTTTTGTTCTCTTCAGCACCACCATTTCGGCAGTCAGTAATCTGGTGGGCATTTTGCCTGCGGAAAGTTTTCCTACTGACATTCGCTCGCTGGGCGTCGGTTTTGCCACTGCCATGAGTCGACTTGGCGCGGCGGTAAGTACTGGCCTGCTGCCGTGGGTGCTGGCGCAGTGGGGAATGCAAGTCACCTTATTGCTCCTGGCGACAGTGTTGTTGGTTGGTTTTGTTGTGACCTGGCTATGGGCACCAGAAACTAAAGCCCTCCCGCTGGTGGCGGCGGGAAATGTAGGAGGTGCGAATGAACATTCTGTTAGCGTTTAA > 542 HMPREF9543_04869 KEGG:_dfe:Dfer_2102_6.2e-40_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFK88329.1 11 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG gamma_subgroup Escherichia_coli_MS_146-1 Escherichia_coli_MS_146-1 ADTN01000328 12167..13498 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1332 Escherichia_coli_146-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-_Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_146-1_genome.Annotation_was_added_to_the_contigs_in_July_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_64.3xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 22-JUL-2010 Escherichia_coli_MS_146-1_E_coli146-1-1.0_Cont839.4,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E1HUR1_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296494410 Submitted_(13-MAY-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTN01000328 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1332 NA genomic_DNA NA MS_146-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749540 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTN01000328.1 TTACCCCATTCTCTGCCCGCGGATCGTCATATTGCTGGTCTGCGCCAGTGACATCCCTCGAGTCTCCGGGGCAAACGCTACGGAAATCAACAAGCCAAACAGCGAGATACCCGCCCCCATTAGCATCGTGTTACTGATACCGTAATTATTGATAAAGATCGGTAGTGCCCAGGTCGAAACAATGGTGCCAATACGACTTAAGGACATAATCACGCCCACGGCAGAGGCGCGGATATCTGTCGGGAAGAGTTCATTAGGATAGAGCCACTGCAAATTACCCGGCCCGCCAGAGAAAAAGGCATACACCGCAAAGGCCATCACTACCAGCCAGATCCCCATATCCGGGATTAGCCCCAAAACCGCCAGCGCCAGCGTCATCATGGCAAAGCTGCCAATCAACAATGGACGCCGTCCGGCAGTGTTTAACCACAGCATCGGCGGAATACAGCCGAGCATAAAGAACAGGCTAATCACCACATTCCCTAGTGCCGCGTTTTTGCCAACCCCCAATCCCAACAAACCAACGATTTGCGGGCCAAAGGTGTAAATGGCGAACATTGGGATCACCTGGCAGGTCCAGATGGCGGCAACAAACAGAACAAAAGGAAAATGGCGGCGATTAAACAGATCGCGAAAACGGGTTTGCTGCGGCTGCTCTTCATCGAAAGCCACCGGTTCGCCAAACAGTTTGATCATCATCTCTTCGCACTCTTTTACTCGCCCTTTGCGTAATAACCAGCGGGGAGATTCAGGCAGTTCGAATCGACCAATCAAAATCAACAAACAGGGGATCGCCGCGCTACCCAGCATCCAGCGCCAGCCGCCTTCCACATCATAAAGCCAGTAGCCGACCAGATCGGCACAGGTCGCGCCGACATACCACATCGCGGCAATAAAGCTGATGGAAAACGCCCGCTGACGGGTACTGGAGAACTCGGTGATCATTGAGGTGGCGATGGGATAATCTGCACCGATGACAATGCCGATAAGTACCCGCATCACCAACAGTTCGACGGGGGATGAAACAAACATCGTCGCCACCGATATCACGCCGATGGCGATGATATCAATGAGGAACATTTTGCGCCGTCCGACTTTATCGGAAATATAACCAAACAGCGATGTGCCAACGAACAGCCCGGCGAGCGTTCCCGCGCCCAGCAAGCCAATCCAGTCAGCGTCCAGTTTCAGCGCCGGCGTCAGTTGCTCCAGCGCCACGCCAATCATTACCAGTACATAACCATCCAGAAACGGACCACCGCTTCCCCACAGCAAAATGCGGCGGTGAATAGAGGAGAATTTGAGATCGTCAAAGTTTCTGGACGGTTGCAT > 543 Franean1_4531 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_rha:RHA1_ro06087_metabolite_transporter,_MFS_superfamily general_substrate_transporter YP_001508812.1 11 MTLQDVPARGPASDQSVASDNGSDPKKMRKVALASLMGTVVEFYDFGIYATAAALVFADAFFPALGGHSGTVVSFATQGVAFVARPLGSILFGHFGDRLGRKRTLIFTMSLMGVSTVLIGALPTAGSIGVAAPILLVLLRVAQGIAAGGEWAGATLFTSEHSPKGRRGFWSMFTNLGGALANILALSTFLAVALYMSDETFTSWGWRLPFLGSFVLIAVGLYVRLKIEETPAFEAEAKRQRSGRGLPFKEAVVNQWKELLLGAGALVTAFSLGYIGIAYLTHYGTATLGLSRPEVLTAGIVGNVVNGCAIISGGILSDRFGRRRVLLAANTVGIPWALVLFPLLDTGTLTAFWVGMAVTFLIAGHGFGVAGSFLSELFHTRYRYTAAGLSYSLAGVVGGAVPPLVAASIIGNHGGFVFGLFLAAYCVVSLLCVLALRETVGNEMIETPAAQQGVTS high_GC_Gram+ Frankia_sp._EAN1pec Frankia_sp._EAN1pec NC_009921 5405484..5406854 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Saunders,E.,_Brettin,T.,_Bruce,D.,_Detter,J.C.,_Han,C.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_Rawnsley,T.,_Niemann,J.,_Benson,D.R.,_Huang,Y.,_Mastronunzio,J.,_Bassi,C.A.,_Tisa,L.S._and_Richardson,P. NA 0:1371 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000820.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3634642Source_DNA_and_bacteria_available_from_Louis_S._Tisa(lst@hypatia.unh.edu)Contacts:_Louis_S._Tisa_(lst@hypatia.unh.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 23-JAN-2012 Frankia_sp._EAN1pec_chromosome,_complete_genome. NA Frankiaceae_Becking_1970_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Frankia_sp_A8LC08_FRASN.gb Frankiella 158311867 Unpublished NA NC_009921 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1371 NA genomic_DNA NA EAN1.pec NA Frankia_sp._EAN1pec NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Frankineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 298653 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Frankineae,_Frankiaceae,_Frankia Complete_sequence_of_Frankia_sp._EAN1pec NA NC_009921.1 TCACGATGTCACCCCCTGCTGCGCTGCGGGCGTCTCGATCATTTCGTTGCCGACGGTCTCCCGCAGAGCCAGTACGCACAGCAGGCTCACCACGCAGTAGGCGGCCAAAAACAGGCCGAACACGAATCCGCCGTGGTTTCCGATGATGCTGGCGGCGACGAGCGGAGGTACCGCGCCGCCGACAACGCCCGCGAGGCTGTAGGAGAGCCCGGCCGCGGTGTAGCGGTAGCGGGTGTGGAACAGCTCGGACAGGAACGACCCCGCGACGCCGAATCCGTGACCGGCGATCAGGAAGGTCACCGCCATCCCGACCCAGAAGGCGGTAAGTGTGCCCGTGTCCAGCAGCGGAAACAGGACCAGCGCCCAGGGGATGCCGACGGTGTTGGCGGCCAGCAGGACCCGCCGACGGCCGAACCGGTCACTCAGAATGCCGCCCGAGATGATTGCGCAACCATTCACAACATTGCCGACAATGCCGGCCGTCAGCACTTCGGGTCGACTCAGGCCCAGCGTGGCGGTGCCGTAGTGGGTCAGGTATGCGATCCCGATGTAGCCGAGCGAGAAGGCCGTCACCAACGCGCCCGCTCCGAGCAGGAGCTCCTTCCACTGGTTGACCACAGCCTCCTTGAACGGCAGCCCACGACCACTGCGCTGACGCTTCGCCTCGGCCTCGAACGCGGGGGTCTCCTCGATCTTCAGCCGCACGTAGAGACCGACGGCGATAAGCACGAAGCTGCCCAGGAACGGGAGGCGCCATCCCCAGGACGTGAAGGTCTCGTCGCTCATGTAGAGCGCCACGGCGAGGAACGTGGACAGGGCGAGGATGTTCGCGAGCGCGCCGCCGAGATTGGTGAACATGGACCAGAAGCCGCGACGGCCCTTCGGTGAATGCTCGGAGGTGAACAGCGTCGCACCCGCCCACTCGCCACCGGCGGCGATGCCCTGCGCGACGCGGAGCAGCACGAGCAGAATGGGTGCCGCGACCCCGATGCTCCCCGCCGTGGGCAGCGCGCCGATGAGCACGGTGGACACGCCCATCAGCGACATCGTGAAGATCAGAGTCCGCTTGCGCCCGAGCCGATCGCCGAAGTGCCCGAACAGGATTGACCCCAGTGGGCGGGCGACGAACGCGACGCCCTGGGTCGCGAACGAAACAACGGTACCGGAATGGCCACCAAGGGCCGGGAAGAACGCATCCGCGAAGACCAGCGCCGCCGCGGTGGCGTAAATACCGAAATCGTAGAACTCGACGACGGTTCCCATTAAGCTCGCCAGGGCGACCTTGCGCATCTTCTTCGGGTCCGACCCGTTATCGCTGGCGACAGACTGGTCGGAGGCTGGACCCCGCGCAGGTACATCTTGTAGCGTCAT > 544 HMPREF9348_04110 KEGG:_rcm:A1E_04550_9.7e-23_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_metabolite:H+_symporter_family_protein EFO56786.1 11 MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYDNIEQKIDNIDHEIADLQAKRTRLVQQHPRIDE gamma_subgroup Escherichia_coli_MS_145-7 Escherichia_coli_MS_145-7 ADWS01000027 41431..42933 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1503 Escherichia_coli_145-7_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs._Funded_by_the_NIAID_Enteric_Pathogens_Research_Unit_at_theUniversity_of_Maryland,_Baltimore_(EPRU;_contract_no.NO1-AI-30055)._Source_DNA_provided_by_Phillip_I._Tarr,_MD_(Divisionof_Gastroenterology_and_Nutrition,_Department_of_Pediatrics,Washington_University_School_of_Medicine,_Campus_Box_8208,_660_S.Euclid,_St._Louis,_MO_63110,_USA)._Funded_by_Effect_of_CrohnsDisease_Risk_Alleles_on_Enteric_Microbiota_(UH2_DK083994_to_EllenLi,_MD,_PhD_(Division_of_Gastroenterology,_Washington_UniversitySchool_of_Medicine,_Campus_Box_8124,_660_S._Euclid,_St._Louis,_MO63110,_USA)).Annotation_was_added_to_the_contigs_in_September_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_Improved_High-Quality_DraftCurrent_Finishing_Status_::_Improved_High-Quality_DraftAssembly_Method_::_Velvet_v._2.1-PreRelease-4/28/2009Genome_Coverage_::_12.4xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 04-OCT-2010 Escherichia_coli_MS_145-7_E_coliMS145-7-1.0.1_Cont26.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E1IV85_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 299857037 Submitted_(21-JUN-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADWS01000027 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1503 NA genomic_DNA NA MS_145-7 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 679204 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADWS01000027.1 TTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGCAATCTCGTGGTCAATATTATCGATTTTCTGCTCGATATTATCGTAATGCTCGACGAGAATTTCCTTCGCTTCCTGTATATCTGACGCCGCCGGTGTCGCACCTTTCAACGGACGATTTGCCGTCTCTTTCATGGTTACGCCGGTGATTAAACCAATCACCGCCACTACCATCAGGTAATAGGCAGGCATCATCAGATTCTGCGAGCTTTCGACCAGCCAGGCCGCCAGTGTTGGCGTCAGACCGGCAACCAGCACCGAAATATTAAATGCCGCCGCCAGCGCGCTGTAACGGATATGCGTCGGGAACATCGCTGGCAAGGTAGAAGCCATAACGCCCGTAAAGCAGTTAAGGATCACCGCCAGCATCAGTAACCCGGCAAAAATCAGGCCGATGACGTTACTGTTAATCAGAATAAACGCCGGGATCGCCAACACAAACAGGGCAACACTACCAAGTAGCACAAACGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAATGGCGATAATAATCAGCACCCCGTGGTCTTCGGAGTAATGCAGGTTATGCGACAAATAACTCGGCATATAGGTCAGCAACATGTAGTAAGTCACGTTGGTGGCAATTACCAGACCAATACATGTCAACAGGCTGCGCCAGTGTTTGGTGGCAATCTCTTTAAACGAGACTTTCGGGCCATCCTGCAAACCTTCGCGGTCGCCCTGTTCCAGTTTATCGACATGCTGCTGGAACGCTGGGGTCTCTTCCAGCGCATGGCGCAGGTAAAGCCCGATAATCCCTAACGGCAGAGCAATAAAGAACGGAATACGCCAGCCCCAGTCGAGGAAGTTCGCTTCGCCGACAATGGTCGAAATTAACACCACTACGCCAGCACCCAGCACAAACCCGGCAATAGAACCAAAGTCCAGCCAGCTGCCCATAAAGCCACGTTTACGGTCAGGGGAGTATTCCGCAACAAATATCGACGCCCCGGTATATTCACCGCCGACCGAGAAACCTTGTGCCATCTTACAGATCAACAGCAGAATCGGTGCCCAAATACCAATCGTGTCGTAGGACGGTATTAAGCCAATACAGAACGTACTGATCGACATAATCACAATAGTGATAGCGAGGATCTTCTGGCGACCATATTTATCGCCCAACATACCAAAGAAGAGTCCGCCAAGCGGTCGAATCAGAAAGGGAACGGAGAACGTGGCAAGTGCAGCAACCATCTGCACGCTGGGGTCAGCCCCCGGGAAAAAAACTTTACCTAATGCGTAAGCAACAAAACCATAAACACCAAAATCAAACCATTCCATTGCATTACCCAGTGATGCTGCGGTAATGGCTTTACGCAGTTTACCGTCATCAATAATGGTGACATCACGAAGGGTAATCGGTTTTACTTTTTTCCTTTTCAGCAT > 545 ECABU_c12680 NA YceE/MdtG_drug_MFS_transporter ADN45831.1 11 MSPCENDTPINWKRNLIVVWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGIVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPMAGGLLADSYGLRPVFFITASVLILCFFVTLFCIREKFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNVAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSYVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRRRIPQISN gamma_subgroup Escherichia_coli_ABU_83972 Escherichia_coli_ABU_83972 CP001671 1281231..1282457 Zdziarski,J.,_Brzuszkiewicz,E.,_Wullt,B.,_Liesegang,H.,_Biran,D.,_Voigt,B.,_Gronberg-Hernandez,J.,_Ragnarsdottir,B.,_Hecker,M.,_Ron,E.Z.,_Daniel,R.,_Gottschalk,G.,_Hacker,J.,_Svanborg,C._and_Dobrindt,U. NA 0:1227 The_strain_is_available_from_Drs_C._Svanborg_and_Bjoern_Wullt_(LundUniversity,_Sweden). NA 21-NOV-2011 Escherichia_coli_ABU_83972,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E1PHU0_ECOAB.gb Escherichia_Castellani_and_Chalmers_1919 307551844 PLoS_Pathog._6_(8),_e1001078_(2010) NA CP001671 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20865122 1227 NA genomic_DNA NA ABU_83972 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 655817 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Host_imprints_on_bacterial_genomes--rapid,_divergent_evolution_in_individual_patients NA CP001671.1 TCAGTTCGATATCTGGGGGATTCGACGACGACGTAGACTGTTCCATGAATAGACTGCGTTGAATAACACTACGCCAGCGGTGACGAGAAATACCGCCCTGAAACCGTAGTTCGCTGAAATCGCTGCTCCCATCAATGGTCCGGTAACGTTGCCAATATCACGAAACGATTGGTTATAGCTGAAGATACGCCCGGCGATCTGGTTGCTCGAGTTATAAACTAATAGTGTCTGTACGGCGGGGAGTAGTGCACCATCGGCGGCACCGAGCAAAAAACGTAAAATCCCAAGTTGTAATGGCGTCTGAACGTAAGACATTGGGATCAACAGCAGTACAGAAAAGATCAGCGCCGTAATCAGGATCTTTTCGGGGCCGATTCGATCGCCAAGTTTGCCGAGTCGTGGTGCACTTAGCAGAGCCGCCACGCCTGGCACCGAGGCGATCATGCCACTGATAAAGGCGACGTTACTGACGTTACCCGCCAGTTCGCGGACATACAGCGTCAGAATGGGGGCAATTGAGCCCGTCGCCACCTGGATGATTAACGTGGTGACAAACAGGCTGAGTACCAGTTTCGGGTTTTTAAGTGATGTCACCACTTCCCGCATATGCAGCATCTCTTTTTTGCTGACCGGCTGGAATTTTTCTCTGATGCAAAACAGGGTGACGAAAAAGCAGAGTATGAGCACACTGGCGGTAATAAAGAATACCGGACGTAAGCCGTAGCTATCGGCGAGCAAACCGCCAGCCATTGGGCCGAGCAACGCGCCGCTAACGCCGCCTGTGGAGAGCGTACCCAGCGCCCAGCCGCTTTTATTACGCGGTACTTGTGTGGCGATAAGAGCATTAGCGTTGGGGACAAATCCGCCAAGTAAACCAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAGAGCAGAGCGTAATAGCATGATTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGGCCGGTAACGCCAAGCTGCTCAACGTAGAGGGGTAAGAAGGGCATTACCAGGCTGAAGGCGGCACCGGTAAGAAAACAGCCTAGCCAGACGACGATCAGGTTTCGTTTCCAGTTTATAGGGGTGTCATTTTCACAGGGTGACAT > 546 UM146_19625 COG0477_Permeases_of_the_major_facilitator_superfamily putative_transporter ADN73259.1 11 MSQITSPATYSISRPQDVIDIVNKNSAINTSIGVIFIALGGILIDAYQAAMVGFGNKYIAAQFGISPGLAATVNASVLIAALIGGLLANRVINRFGQKRAFIIGMGLCTIGAAAVAIAPSIWWVLVCRVIMGFGLGIDFPLATNAVAELRGSTSKKTGTSVNLWQMAWYVSTTVVYLVLLPLLLSGIAEEQLWRYGIFIGAIFAVIFMILRYFFIGESAMWAARVGRYQEACDILGKRYGVQAHVAASGTTEAKFSEKAENKYSGGYGILFNDRYRKRTILGCVVATMQAWQYNAVGVYLPLTLAGIISGGLTGALTGSAVVNALCGVTGGMIGSFILQRLGTRRQSMYGFAVVTLALLSLGALATTNPWLSLGLLGSIIFFHSAGPGGLGMTIATLSYPPAIRPTGVGFARAIMRTGAIAGLIFWPMLWGALKTEAFYWLAIVPFLGFLTCVLINWEPLGANVDAEDAEVLAELKK gamma_subgroup Escherichia_coli_UM146 Escherichia_coli_UM146 CP002167 4092378..4093811 Krause,D.O.,_Little,A.C.,_Dowd,S.E._and_Bernstein,C.N. NA 0:1434 To_obtain_a_sample_of_UM146_E_coli_isolate_please_contact_DenisKrause,_denis_krause@umanitoba.caAnnotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation. NA 21-NOV-2011 Escherichia_coli_UM146,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E1RXE6_ECOUM.gb Escherichia_Castellani_and_Chalmers_1919 307625127 J._Bacteriol._193_(2),_583_(2010) NA CP002167 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21075930 1434 NA genomic_DNA NA UM146 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 869729 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Complete_genome_sequence_of_adherent_invasive_Escherichia_coli_UM146_isolated_from_ileal_Crohns_disease_biopsy_tissue NA CP002167.1 ATGAGTCAAATCACCAGTCCTGCAACTTATTCAATTAGTCGGCCACAGGACGTAATTGATATTGTTAATAAGAACTCTGCAATCAACACCAGTATCGGCGTTATTTTTATTGCTTTGGGCGGCATATTGATTGATGCCTACCAGGCGGCGATGGTGGGGTTTGGTAATAAATACATTGCCGCTCAATTCGGCATTTCGCCGGGTCTTGCTGCAACCGTCAATGCATCAGTATTAATCGCCGCGTTAATTGGCGGTTTATTAGCGAACCGAGTAATAAACCGCTTTGGGCAAAAGCGGGCATTTATTATTGGCATGGGGCTGTGCACCATCGGTGCTGCAGCGGTAGCTATTGCTCCCAGTATCTGGTGGGTGCTGGTGTGCCGCGTCATCATGGGCTTTGGTTTAGGCATCGACTTCCCTTTGGCAACCAATGCCGTGGCAGAGCTTCGTGGTTCAACGTCGAAGAAAACCGGCACGTCGGTCAACCTCTGGCAAATGGCCTGGTATGTTTCGACAACCGTTGTTTATTTGGTGCTTTTGCCGCTGCTTCTGTCTGGTATCGCTGAAGAACAATTGTGGCGTTACGGAATATTCATCGGAGCTATTTTTGCAGTCATCTTCATGATTTTGCGTTACTTCTTTATTGGTGAATCCGCAATGTGGGCCGCACGCGTCGGGCGTTACCAGGAAGCGTGCGACATTCTGGGAAAACGTTATGGTGTTCAGGCTCACGTTGCGGCATCGGGTACAACAGAAGCGAAATTCTCGGAAAAAGCAGAGAATAAATACAGTGGTGGATATGGCATCTTATTTAATGATCGTTACCGCAAACGCACCATTCTTGGCTGTGTCGTGGCAACCATGCAGGCGTGGCAATATAACGCCGTAGGTGTTTATCTTCCTCTTACGTTGGCGGGAATAATAAGTGGCGGGCTTACTGGCGCGTTAACCGGTTCTGCCGTCGTGAATGCCCTTTGTGGGGTGACAGGCGGGATGATCGGCTCGTTTATTCTCCAACGACTGGGTACTCGCCGACAGTCGATGTATGGATTTGCTGTTGTGACCTTAGCATTGCTGTCGTTAGGCGCACTGGCAACGACTAATCCCTGGCTGTCTTTAGGGTTATTGGGATCAATTATTTTCTTCCATTCAGCGGGTCCTGGTGGGCTGGGCATGACCATTGCCACACTCTCTTATCCTCCCGCTATTCGCCCTACTGGGGTCGGATTTGCCCGCGCTATTATGCGCACAGGGGCAATTGCAGGACTCATTTTCTGGCCGATGCTGTGGGGTGCGTTGAAAACTGAAGCGTTTTACTGGTTGGCAATCGTGCCATTCCTGGGATTCCTGACCTGTGTATTGATTAATTGGGAACCACTGGGTGCAAATGTTGATGCTGAGGACGCAGAGGTTCTGGCTGAATTGAAGAAATAA > 547 UM146_03785 COG5544_Predicted_periplasmic_lipoprotein hypothetical_protein ADN70169.1 11 MANDSWSGQDKAQHFIASAMLSAAGNEYSQHQGMSRDRSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDFAWDIAGASTGYTVWQLTRH gamma_subgroup Escherichia_coli_UM146 Escherichia_coli_UM146 CP002167 775112..776410 Krause,D.O.,_Little,A.C.,_Dowd,S.E._and_Bernstein,C.N. NA 1295:>1299 To_obtain_a_sample_of_UM146_E_coli_isolate_please_contact_DenisKrause,_denis_krause@umanitoba.caAnnotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation. NA 21-NOV-2011 Escherichia_coli_UM146,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E1S315_ECOUM.gb Escherichia_Castellani_and_Chalmers_1919 307625127 J._Bacteriol._193_(2),_583_(2010) NA CP002167 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21075930 1299 NA genomic_DNA NA UM146 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 869729 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Complete_genome_sequence_of_adherent_invasive_Escherichia_coli_UM146_isolated_from_ileal_Crohns_disease_biopsy_tissue NA CP002167.1 ATGGCTGAAAGTACTGTAACGGCAGACAGCAAACTGACAAGTAGTGATACTCGTCGCCGTATTTGGGCAATTGTTGGGGCCTCTTCAGGTAATCTGATCGAGTGGTTCGATTTCTATGTCTACTCGTTCTGTTCACTCTACTTCGCCCACATCTTCTTCCCTTCCGGGAACACGACGACTCAACTACTGCAAACAGCAGGTGTTTTTGCTGCGGGATTTCTGATGCGCCCAATAGGCGGTTGGCTATTTGGCCGCATAGCCGATAAACATGGTCGCAAAAAATCGATGCTATTATCGGTGTGTATGATGTGTTTCGGCTCACTGGTTATCGCCTGTTTGCCAGGCTACGAAACAATCGGTACCTGGGCTCCGGCATTATTGCTTCTTGCTCGTTTATTCCAGGGATTATCCGTTGGCGGAGAATATGGCACCAGCGCCACCTATATGAGTGAAGTTGCCGTTGAAGGGCGCAAAGGTTTTTACGCATCATTTCAGTATGTGACGTTGATCGGCGGGCAACTGCTAGCTCTACTGGTTGTCGTGGTTTTACAACACACCATGGAAGACGCTGTACTCAGAGAGTGGGGATGGCGTATTCCTTTCGCGTTAGGGGCTGTGTTAGCTGTTGTGGCGTTGTGGTTACGTCGTCAGTTAGATGAAACTTCACAACAAGAAACACGCGCTTTAAAAGAAGCTGGATCTCTGAAAGGATTATGGCGCAATCGCCGTGCATTCATCATGGTTCTCGGTTTTACCGCTGCGGCCTCCCTTTGTTTCTATACCTTCACCACTTATATGCAGAAGTATCTGGTAAATACTGCGGGAATGCATGCCAACGTGGCGAGTGGCATTATGACTGCCGCATTGTTTGTATTCATGCTTATTCAACCACTTATTGGCGCGCTGTCGGATAAGATTGGTCGCCGTACCTCAATGTTATGTTTCGGTTCTCTGGCAACCATTTTTACCGTTCCTATTCTCTCAGCATTGCAGAACGTTTCCTCGCCTTATGCCGCTTTTGGTCTGGTGATGTGCGCCCTGCTGATAGTGAGTTTTTATACTTCAATCAGTGGAATACTGAAGGCTGAGATGTTCCCGGCACAGGTTCGCGCATTAGGCGTTGGTCTGTCATATGCGGTCGCCAATGCTATATTTGGTGGTTCGGCGGAGTACGTAGCGTTGTCGCTGAAATCAATAGGAATGGAAACAGCCTTCTTCTGGTATGTGACCTTGATGGCCGTGGTGGCGTTTCTGGTTTCACTAACATTGCACCGTAAAGGAAAAGGGATGCGGCTTTAG > 548 ECH7EC4206_A3729 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 D-xylose-proton_symporter EDZ75910.1 11 MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQTATL gamma_subgroup Escherichia_coli_O157:H7_str._EC4206 Escherichia_coli_O157:H7_str._EC4206 ABHK02000001 2433914..2435389 Rosovitz,M.J._and_Ravel,J. NA 0:1476 DNA/Bacteria_source:_Mark_Eppinger,_Jacques_RavelInstitute_for_Genome_Sciences_(IGS),_Department_of_Microbiology_&Immunology,_University_of_Maryland,_School_of_Medicine,_Baltimore,MD_21201,_USAMark_K._Mammel,_J._Eugene_LeClerc,_Thomas_A._CebulaDivision_of_Molecular_Biology,_Office_of_Applied_Research_andSafety_Assessment,_Center_for_Food_Safety_and_Applied_Nutrition,U.S._Food_and_Drug_Administration,_Laurel,_MD_20708,_USA. NA 06-OCT-2008 Escherichia_coli_O157:H7_str._EC4206_gcontig_1113126024111,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E2JXI4_ECO57.gb Escherichia_Castellani_and_Chalmers_1919 208725411 Submitted_(30-OCT-2007)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ABHK02000001 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1476 NA genomic_DNA NA EC4206 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 444447 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ABHK02000001.1 TTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGGGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCCACATAAACAGTGCTGCCAGAACGCCCATACAACCGTAAATCCAGTAGGAGAAACCGTTGTGGAAATGGGCCACCAGCCAGGAGTTTTTGTCCATCATCGGGAAGGTCCAGGAGACGAAGTAGTTCGCCAGCCACTGGGCCGCCACCGCGATTGCCAGCGCTTTACCTCGAATAGCATTCGGGAAGATTTCCGACAGCAGTACCCAGCATACCGGACCCCAGGACATGGCAAAGGCGGCAACATAGAACAGCATCGACAGTAGCGCCACAATACCCGGTGCCTGAGTGTAAAACGCGGTACCGAGGCTAAACATACCGATTGCCATTCCGAGTGCGCCGATAATTTGCAGTGGCTTACGACCAAATTTATCCACCGTCATAATTGCCAGAACGGTGAAGGTGAGGTTGATAACTCCGACAATAATGGTCTGCAACAGCGCGATATCCGTGCTGGCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATAACGCCGATGACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGTTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGTGACATCAGCCAGCGAGGACTTTCTGGCACGGTATACAGCAGCATTAAGAACAGCAGTGCAGGGATACATTCCGAGGCAAACATATAACGCCAGCCGTCAGTATTCAGCCAGCTGGCATCACCGGAACGCGCAATAAAATAGTTTACGCAGTAAACTAAAAGCTGCCCGAAAATAATCGCAAACTGGTTAAATGAAACCAGTTTCCCGCGAATATGAGCAGGAGCAAGTTCCGCAATATACATTGGTGAAAGCATTGAGGCTAAACCAACGCCAATACCGCCAATAATACGATAAATAACAAATTCCGGGACATAACCTGCCAGATAAACAGGCACTGTGTTGTCCGGGTTTATAGAGGTAAAACCAAGTTCTGGCCAGGCAGAACCTACACCAGAAATAAAAAACAGGACAGCAGCAATCTTAAGTGAATCACGACGACCGAAGCGGTTACTGCAATAACCACCGAGGGCACCGCCGATGATGCAACCAATCAGAGCGCTGGCCACGCAAAACCCTAACAGGGAGTTGGCAGCGGATTCACTTAAGTTTTGTGGAGCAACAAAGACGGTATTGAGTGACTCAACAGTACCGGAAATAACGGCGGTGTCGTAGCCAAATAATAAACCACCTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCAT > 549 ECH7EC4045_A0699 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 D-xylose-proton_symporter EDZ84244.1 11 MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQTATL gamma_subgroup Escherichia_coli_O157:H7_str._EC4045 Escherichia_coli_O157:H7_str._EC4045 ABHL02000001 2302245..2303720 Rosovitz,M.J._and_Ravel,J. NA 0:1476 DNA/Bacteria_source:_Mark_Eppinger,_Jacques_RavelInstitute_for_Genome_Sciences_(IGS),_Department_of_Microbiology_&Immunology,_University_of_Maryland,_School_of_Medicine,_Baltimore,MD_21201,_USAMark_K._Mammel,_J._Eugene_LeClerc,_Thomas_A._CebulaDivision_of_Molecular_Biology,_Office_of_Applied_Research_andSafety_Assessment,_Center_for_Food_Safety_and_Applied_Nutrition,U.S._Food_and_Drug_Administration,_Laurel,_MD_20708,_USA. NA 06-OCT-2008 Escherichia_coli_O157:H7_str._EC4045_gcontig_1113126024325,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E2KAI2_ECO57.gb Escherichia_Castellani_and_Chalmers_1919 208733097 Submitted_(30-OCT-2007)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ABHL02000001 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1476 NA genomic_DNA NA EC4045 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 444448 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ABHL02000001.1 TTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGGGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCCACATAAACAGTGCTGCCAGAACGCCCATACAACCGTAAATCCAGTAGGAGAAACCGTTGTGGAAATGGGCCACCAGCCAGGAGTTTTTGTCCATCATCGGGAAGGTCCAGGAGACGAAGTAGTTCGCCAGCCACTGGGCCGCCACCGCGATTGCCAGCGCTTTACCTCGAATAGCATTCGGGAAGATTTCCGACAGCAGTACCCAGCATACCGGACCCCAGGACATGGCAAAGGCGGCAACATAGAACAGCATCGACAGTAGCGCCACAATACCCGGTGCCTGAGTGTAAAACGCGGTACCGAGGCTAAACATACCGATTGCCATTCCGAGTGCGCCGATAATTTGCAGTGGCTTACGACCAAATTTATCCACCGTCATAATTGCCAGAACGGTGAAGGTGAGGTTGATAACTCCGACAATAATGGTCTGCAACAGCGCGATATCCGTGCTGGCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATAACGCCGATGACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGTTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGTGACATCAGCCAGCGAGGACTTTCTGGCACGGTATACAGCAGCATTAAGAACAGCAGTGCAGGGATACATTCCGAGGCAAACATATAACGCCAGCCGTCAGTATTCAGCCAGCTGGCATCACCGGAACGCGCAATAAAATAGTTTACGCAGTAAACTAAAAGCTGCCCGAAAATAATCGCAAACTGGTTAAATGAAACCAGTTTCCCGCGAATATGAGCAGGAGCAAGTTCCGCAATATACATTGGTGAAAGCATTGAGGCTAAACCAACGCCAATACCGCCAATAATACGATAAATAACAAATTCCGGGACATAACCTGCCAGATAAACAGGCACTGTGTTGTCCGGGTTTATAGAGGTAAAACCAAGTTCTGGCCAGGCAGAACCTACACCAGAAATAAAAAACAGGACAGCAGCAATCTTAAGTGAATCACGACGACCGAAGCGGTTACTGCAATAACCACCGAGGGCACCGCCGATGATGCAACCAATCAGAGCGCTGGCCACGCAAAACCCTAACAGGGAGTTGGCAGCGGATTCACTTAAGTTTTGTGGAGCAACAAAGACGGTATTGAGTGACTCAACAGTACCGGAAATAACGGCGGTGTCGTAGCCAAATAATAAACCACCTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCAT > 550 LF82_1451 536;_55989;_APEC_01;_ATC8739;_CFT073;_E24377A;_ED1a;_HS;_IAI1;_IAI39;_E2348,_EDL933;_EC4115;_157_H7;_S88;_SE11;_SMS_3_5;_UMN026;_UTI89;_K12_DH10B;_K12_MG1655;_K12_W3110 sialic_acid_transporter CAP77678.1 11 MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLACGFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHGGKAPVRTMVDILYRGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNNLVKTKS gamma_subgroup Escherichia_coli_LF82 Escherichia_coli_LF82 CU651637 3407734..3409224 Peyretaillade,E.,_Claret,L.,_Bonnet,R.,_Dossat,C.,_Barbe,V.,_Vacherie,B.,_Segurens,B.,_Peyret,P._and_Darfeuille-Michaud,A. NA 0:1491 NA NA 24-NOV-2010 Escherichia_coli_LF82_chromosome,_complete_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E2QEQ1_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 222031834 Unpublished NA CU651637 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1491 NA genomic_DNA NA LF82 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 591946 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Complete_genome_sequence_of_adherent_invasive_Escherichia_coli_strain_LF82_isolated_from_a_patient_with_Crohns_disease NA CU651637.1 TTAACTTTTGGTTTTGACTAAATTGTTTTTGGCGCTGCCAAATGGCACGGCACCGCTAAATGGTTTGCCGTCGATAGCGTCATGAGTACGCAATGCTTCCGGGCGCAGCCAACGCTGAACACGAGAAGGCATATCCAGACCAATCAGCAGGATCACCACAAATGTCAGACTGAACGAGAGCGATGCCAGCGCAGTACCCAGATCCAGACGTTGAGCGATCAACGCGCCGATGATTGGGGCCAGTGCACCGCCCAATGCGCCAACGTTGTAGGTAAAGCCCAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTCGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCAATCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGACTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCCCCGACGCAGCACCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCGACAGTATGCGGGTCATAAGCCAGATCGGTTTTCAGATACGTTGGCAGCAGCGCCTGAATCGGCCATGAGTAGAGGAAAGCGAACAACACGACCACCATCAGCATTACGCCCGTTGGCCAGCGTTTGCCCGTACTCTGCACCATAAAGCTGATAAAGATTGCGGCGCATAACAGCCCAAGAACAGCGACGATCGCGGCATTTTGCAGGTTACCGGCGAAGCAGAACCACAGCGCAGTAGCCGCCGCCAGTGTCATTACGATATTGGCAATGCGATGTTCACCACGGTAGAGAATGTCTACCATCGTGCGTACTGGTGCTTTACCCCCGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATTGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCGGAACCACCAGACTATAGACCTGAGCGGCAACGACGGCCCCCACTGAGAAGCCTGAAATCAGAAAACCACTGGCTTTGTTACGCAGATGCTTTGGCCAGCTTTCAATGACATAGGTGGCGCTGGAACCGTATTCACCCGCCATCCCCATGCCGATGACCAGACGAGCGATAAACATGGTGATGTAGCCTGGCGCAAAGCCGCAGGCCAGCGTCCCGGCCGAGAAGAGAACGATGCTGGTGACCATTGCCAGACGACGCCCGTAGCGGTCACCCATAGCGCCGAGCATCAGGCCGCCGAACCAGCGAGAGATAAAGGCTGCGGAGATCAGACTTGCCGCCTGCACCGTCGTCAGCCCGAATTCACCCTGTACTTCGGTGAGTACCAGGGCGATTAAAACGAAATCAAAACCGTCAAGCAGATATCCCAACCAGGCAGCGGAAAATGCCCGCCATTGTGCGCGGTTAAGATGGCGATACCACGGGATATTCTGGGTTGTAGTACTCAT > 551 LF82_2891 536;_55989;_APEC_01;_ATC8739;_CFT073;_E24377A;_ED1a;_HS;_IAI1;_IAI39;_E2348,_EDL933;_EC4115;_157_H7;_S88;_SE11;_SMS_3_5;_UMN026;_UTI89;_K12_DH10B;_K12_MG1655;_K12_W3110 Inner_membrane_metabolite_transport_protein_ydjE CAP76262.1 11 MMIKMRQVNLPQLLPFLANPRHPMEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVVLAKLVSNGWSNNFLNAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFFSWRIMFLLGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAESQLREVEQQIEREKSIRLPPLTLNQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSALLIIIAVLGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYGSITVFMVLGVMLVLCALVLSIFGIETRKVSLEEISEVN gamma_subgroup Escherichia_coli_LF82 Escherichia_coli_LF82 CU651637 1822144..1823571 Peyretaillade,E.,_Claret,L.,_Bonnet,R.,_Dossat,C.,_Barbe,V.,_Vacherie,B.,_Segurens,B.,_Peyret,P._and_Darfeuille-Michaud,A. NA 0:1428 NA NA 24-NOV-2010 Escherichia_coli_LF82_chromosome,_complete_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E2QMX6_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 222031834 Unpublished NA CU651637 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1428 NA genomic_DNA NA LF82 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 591946 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Complete_genome_sequence_of_adherent_invasive_Escherichia_coli_strain_LF82_isolated_from_a_patient_with_Crohns_disease NA CU651637.1 TTAATTCACCTCAGAAATCTCTTCCAGCGACACCTTCCGCGTTTCGATGCCAAAAATGGAGAGAACCAGCGCACAGAGCACTAACATGACACCAAGCACCATAAACACCGTGATCGACCCATAATGTGTTAATAATGCCGCAACGCCATAGGGCGTGAAGACTGCGACGATCCGTCCGACGGCATTAACGAAACCCGAACCACGCAGGCGTAAATGCGTTGGCCAAAGTTCCGGGATATAAACCGCCGACGCGAAGCAAACATACATGTATAAAAAGAAGATCATCACCAGGCCATAGATTAAAATCGCCCACTCTGTAGTCTGAATTGAATAGATATAGCCTAACACGGCAATAATAATAAGTAAGGCAGAGCCAAATAATCGACGAGGAAAATGATCAATAATTAATGCTGCAATAAATATCCCTACCGGAGCGCCAATCATAATAACAGCGGTCATTAATATTGATTTATCAACATCAATGCCGGAGTTAACAAATATGGTCGGTATCCATACGGTGATGGTATAAAGCGAAATGTTCATAGCAATTAAAACAGTAATCGCGACTAATGTACGTCGTAACATTTCCCCTTTAAACAGGAGCCAGAAAGTCCCCTTGATTACCTTAACCTTGCTGTTGCTCTGGTTCAAAGTAAGCGGGGGTAAACGAATACTCTTCTCTCTTTCAATTTGCTGCTCTACTTCACGAAGTTGGCTTTCTGCACCTGCGATTTGCCCTTTCCCTGCCAGCCATCGTGGCGACTCAATAAAGTATTTACCTGAGAGAAACCAGGCTAACAGTATGCCAATACCGCCCAGCAGAAACATTATCCGCCAACTAAAAAAAGCGATCACCACCACGCCTATTGCCGCAGACAGCATGGGCGACCAGTTACCAACAAATGAGAGCCGCGCGGACCATTTTCCACGCACCGTCGCAGGGATAAACTCCGTAAATGAGGCATAGCCAACCATAATCAGCGCCCCCATTCCTGTTCCCATCAGGAAGCGAAAGAAGATGAGCCAGTACATATCAGGGACAAAAGCGGCCCCTGTTGCCGCAATACCGACGATGAGAAGATTTATGCGAAACGCCCTGCGCCGCCCAAAGTAGTCACCAATAAACCCACCGGTAAGAGAGCCGATGAAATAACCAAACATTAATGCCGAGGTAAAGGCGGCATTGAGGAAATTATTTGACCATCCATTGCTTACCAGCTTTGCTAAGACGACATTACCGGAGTAACTCAAAAACCCCGTTAATAACAGACTAAAGCTTATTATACCAAATATACGATAATGAAACCGGGCCAAAGGCAAGCGGTCCAGTCTTGCGCCAATTTGATCATATTGTTCCATTGGGTGCCTCGGATTTGCTAAAAAAGGTAGCAATTGCGGCAAATTCACTTGCCGCATCTTTATCATCAT > 552 LF82_1161 536;_55989;_APEC_01;_ATC8739;_CFT073;_E24377A;_ED1a;_HS;_IAI1;_IAI39;_E2348,_EDL933;_EC4115;_157_H7;_S88;_SE11;_SMS_3_5;_UMN026;_UTI89;_K12_DH10B;_K12_MG1655;_K12_W3110 alpha-ketoglutarate_permease CAP77033.1 11 MICNKYITFFLPKNKQKRPTKASDYGRRHNGMAESTVTADSKLTSSDTRRRIWAIVGASSGNLIEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQHTMEDAVLREWGWRIPFALGAVLAVVALWLCRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAASLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLATIFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLTLHRKGKGMRL gamma_subgroup Escherichia_coli_LF82 Escherichia_coli_LF82 CU651637 2701964..2703355 Peyretaillade,E.,_Claret,L.,_Bonnet,R.,_Dossat,C.,_Barbe,V.,_Vacherie,B.,_Segurens,B.,_Peyret,P._and_Darfeuille-Michaud,A. NA 0:1392 NA NA 24-NOV-2010 Escherichia_coli_LF82_chromosome,_complete_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E2QQ47_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 222031834 Unpublished NA CU651637 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1392 NA genomic_DNA NA LF82 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 591946 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Complete_genome_sequence_of_adherent_invasive_Escherichia_coli_strain_LF82_isolated_from_a_patient_with_Crohns_disease NA CU651637.1 CTAAAGCCGCATCCCTTTTCCTTTACGGTGCAATGTTAGTGAAACCAGAAACGCCACCACGGCCATCAAGGTCACATACCAGAAGAAGGCTGTTTCCATTCCTATTGATTTCAGCGACAACGCTACGTACTCCGCCGAACCACCAAATATAGCATTGGCGACCGCATATGACAGACCAACGCCTAATGCGCGAACCTGTGCCGGGAACATCTCAGCCTTCAGTATTCCACTGATTGAAGTATAAAAACTCACTATCAGCAGGGCGCACATCACCAGACCAAAAGCGGCATAAGGCGAGGAAACGTTCTGCAATGCTGAGAGAATAGGAACGGTAAAAATGGTTGCCAGAGAACCGAAACATAACATTGAGGTACGGCGACCAATCTTATCCGACAGCGCGCCAATAAGTGGTTGAATAAGCATGAATACAAACAATGCGGCAGTCATAATGCCACTCGCCACGTTGGCATGCATTCCCGCAGTATTTACCAGATACTTCTGCATATAAGTGGTGAAGGTATAGAAACAAAGGGAGGCCGCAGCGGTAAAACCGAGAACCATGATGAATGCACGGCGATTGCGCCATAATCCTTTCAGAGATCCAGCTTCTTTTAAAGCGCGTGTTTCTTGTTGTGAAGTTTCATCTAACTGACGACATAACCACAACGCCACAACAGCTAACACAGCCCCTAACGCGAAAGGAATACGCCATCCCCACTCTCTGAGTACAGCGTCTTCCATGGTGTGTTGTAAAACCACGACAACCAGTAGAGCTAGCAGTTGCCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACGGATAATCCCTGGAATAAACGAGCAAGAAGCAATAATGCCGGAGCCCAGGTACCGATTGTTTCGTAGCCTGGCAAACAGGCGATAACCAGTGAGCCGAAACACATCATACACACCGATAATAGCATCGATTTTTTGCGACCATGTTTATCGGCTATGCGGCCAAATAGCCAACCGCCTATTGGGCGCATCAGAAATCCCGCAGCAAAAACACCTGCTGTTTGCAGTAGTTGAGTCGTCGTGTTCCCGGAAGGGAAGAAGATGTGGGCGAAGTAGAGTGAACAGAACGAGTAGACATAGAAATCGAACCACTCGATCAGATTACCTGAAGAGGCCCCAACAATTGCCCAAATACGGCGACGAGTATCACTACTTGTCAGTTTGCTGTCTGCCGTTACAGTACTTTCAGCCATGCCATTATGTCTCCTGCCGTAATCCGATGCTTTTGTCGGTCGCTTTTGTTTATTTTTTGGTAAGAAAAATGTTATATATTTGTTGCATATCAT > 553 EC182770_3723 NA uncharacterized_protein_yfiM EFP98998.1 11 MRILFVCSLLLLSGCSHMANDSWSGQDKAQHFIASAMLSAAGNEYSQHQGMSRDHSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGASTGYTVWQLTRH gamma_subgroup Escherichia_coli_1827-70 Escherichia_coli_1827-70 ADUK01000026 1917..3215 Rasko,D.,_Redman,J.,_Daugherty,S.C.,_Tallon,L.,_Sadzewicz,L.,_Jones,K.,_Santana-Cruz,I._and_Liu,X. NA 1295:>1299 ##Genome-Assembly-Data-START##Assembly_Method_::_Celera_Assembler_v._6.0Genome_Coverage_::_32xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 25-OCT-2010 Escherichia_coli_1827-70_gec1827.assembly.33,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E2WZC7_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 310331760 Submitted_(13-OCT-2010)_Institute_for_Genome_Sciences,_The_University_of_Maryland_School_of_Medicine,_801_W._Baltimore_St,_Baltimore,_MD_21201,_USA NA ADUK01000026 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1299 NA genomic_DNA NA 1827-70 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 670888 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUK01000026.1 ATGGCTGAAAGTACTGTAACGGCAGACAGCAAACTGACAAGTAGTGATACTCGTCGCCGCATTTGGGCGATTGTGGGGGCCTCTTCAGGTAATCTGGTCGAGTGGTTCGATTTCTATGTCTACTCGTTCTGTTCACTCTACTTCGCCCACATTTTCTTCCCTTCCGGGAACACGACGACTCAACTACTACAAACAGCAGGTGTTTTTGCTGCGGGATTCCTGATGCGCCCAATAGGCGGTTGGCTATTTGGCCGCATAGCCGATAAACATGGTCGCAAAAAATCGATGCTGTTATCGGTGTGTATGATGTGTTTCGGATCGCTGGTTATCGCCTGCCTCCCAGGTTATGAAACTATAGGTACGTGGGCTCCGGCATTATTGCTTCTCGCTCGTTTATTTCAGGGATTATCCGTTGGCGGAGAATATGGCACCAGCGCCACCTATATGAGTGAAGTTGCCGTTGAAGGGCGCAAAGGTTTTTACGCATCATTTCAGTATGTGACGTTGATCGGCGGACAACTGCTAGCCCTACTGGTTGTCGTGGTTTTACAACACACCATGGAAGACGCTGCACTCAGAGAGTGGGGATGGCGTATTCCTTTCGCGTTAGGAGCTGTGTTAGCTGTTGTGGCGTTGTGGTTACGTCGTCAGTTAGATGAAACTTCGCAACAAGAAACGCGCGCTTTAAAAGAAGCTGGATCTCTGAAAGGATTATGGCGCAATCGCCGTGCATTCATCATGGTTCTCGGTTTTACCGCTGCGGGCTCCCTTTGTTTCTATACCTTCACTACTTATATGCAGAAGTATCTGGTAAATACTGCGGGAATGCATGCCAACGTGGCGAGTGGCATTATGACTGCCGCATTGTTTGTATTCATGCTTATTCAACCACTCATTGGCGCGCTGTCGGATAAGATTGGTCGCCGTACCTCAATGTTATGTTTCGGTTCGCTGGCAGCCATTTTTACCGTTCCTATTCTCTCAGCATTGCAAAACGTTTCCTCGCCTTATGCCGCTTTTGGTCTGGTGATGTGTGCCCTGCTGATAGTGAGTTTTTATACATCAATCAGTGGAATACTGAAGGCTGAGATGTTCCCGGCACAGGTTCGCGCATTAGGCGTTGGTCTGTCATATGCGGTCGCTAATGCTATATTTGGTGGTTCGGCGGAGTACGTAGCGTTGTCGCTGAAATCAATAGGAATGGAAACAGCCTTCTTCTGGTATGTGACCTTGATGGCCGTGGTGGCGTTTCTGGTTTCTTTGATGCTACATCGCAAAGGGAAGGGGATGCGTCTTTAG > 554 EC182770_4663 NA proline/betaine_transporter_domain_protein EFP98877.1 11 MGQLCEESYAEKEKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFSRGLTPACRWLLHLPLSPFPF gamma_subgroup Escherichia_coli_1827-70 Escherichia_coli_1827-70 ADUK01000027 210117..211427 Rasko,D.,_Redman,J.,_Daugherty,S.C.,_Tallon,L.,_Sadzewicz,L.,_Jones,K.,_Santana-Cruz,I._and_Liu,X. NA 1271:>1311 ##Genome-Assembly-Data-START##Assembly_Method_::_Celera_Assembler_v._6.0Genome_Coverage_::_32xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 25-OCT-2010 Escherichia_coli_1827-70_gec1827.assembly.34,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E2X271_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 310331414 Submitted_(13-OCT-2010)_Institute_for_Genome_Sciences,_The_University_of_Maryland_School_of_Medicine,_801_W._Baltimore_St,_Baltimore,_MD_21201,_USA NA ADUK01000027 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1311 NA genomic_DNA NA 1827-70 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 670888 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUK01000027.1 TTATTCATCAATTCGCGGATGTTGCTGCACCAGGCGGGTACGTTTCGCCTGCAAATCGGCAATCTCGTGGTCAATATTATCGATTTTCTGCTCGATATTATCGTAATGCTCGACGAGAATTTCCTTCGCTTCCTGTATATCTGACGCCGCCGGTGTCGCACCTTTCAACGGACGATTTGCCGTCTCTTTCATGGTTACGCCGGTGATTAAACCAATCACCGCCACTACCATCAGGTAATAGGCAGGCATCATCAGATTCTGCGAGCTTTCGACCAGCCAGGCCGCCAGTGTTGGCGTCAGACCGGCAACCAGCACCGAAATATTAAATGCCGCCGCCAGCGCGCTGTAACGGATATGCGTCGGGAACATCGCTGGCAAGGTAGAAGCCATAACGCCCGTAAAGCAGTTAAGGATCACCGCCAGCATCAGTAACCCGGCAAAAATCAGGCCGATGACGTTACTGTTAATCAGAATAAACGCCGGGATCGCCAACACAAACAGGGCAACACTACCAAGTAGCACAAACGGACGACGGCCAAAACGGTCACTCAGCAAGCCCATCACCGGCTGGACAAACAGCATACCGATCATAATGGCGATAATAATCAGCACCCCGTGGTCTTCGGAGTAATGCAAGTTATGCGACAAATAACTCGGCATATAGGTCAGCAACATGTAGTAAGTCACGTTGGTGGCAATTACCAGACCAATACATGTCAACAGGCTGCGCCAGTATTTAGTGGCAATCTCTTTAAACGAGACTTTCGGGCCATCCTGCAAACCTTCGCGGTCGCCCTGTTCCAGTTTATCAACATGCTGCTGGAACGCCGGAGTTTCTTCCAGCGCATGGCGCAGGTAAAGCCCGATAATCCCTAACGGCAGAGCAATAAAGAACGGAATACGCCAGCCCCAGTCGAGGAAGTTCGCTTCGCCGACAATGGTCGAAATTAACACCACCACGCCCGCACCCAGCACAAACCCGGCAATAGAACCGAAGTCCAGCCAGCTGCCCATAAAGCCACGTTTACGGTCAGGGGAGTATTCCGCAACAAATATCGACGCCCCGGTATATTCACCGCCGACCGAGAAACCTTGTGCCATCTTACAGATCAACAGCAGAATCGGTGCCCAAATACCAATCGTGTCGTAGGACGGTATTAAGCCAATACAGAACGTACTGATCGACATAATCACAATAGTGATAGCGAGGATCTTCTGGCGACCATATTTATCGCCCAACATACCAAAGAAGAGTCCGCCAAGCGGTCGAATCAGAAAGGGAACGGAGAAAGTGGCAAGTGCAGCAACCAT > 555 EC236275_1979 NA putative_metabolite_transport_protein_yaaU EFR17302.1 11 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFEEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG gamma_subgroup Escherichia_coli_2362-75 Escherichia_coli_2362-75 ADUL01000057 383928..385259 Rasko,D.,_Redman,J.,_Daugherty,S.C.,_Tallon,L.,_Sadzewicz,L.,_Jones,K.,_Santana-Cruz,I._and_Liu,X. NA 0:1332 ##Genome-Assembly-Data-START##Assembly_Method_::_Celera_Assembler_v._6.0Genome_Coverage_::_43xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 22-NOV-2010 Escherichia_coli_2362-75_gec2362.assembly.61,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E3XLA5_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 312289018 Submitted_(21-OCT-2010)_Institute_for_Genome_Sciences,_The_University_of_Maryland_School_of_Medicine,_801_W._Baltimore_St,_Baltimore,_MD_21201,_USA NA ADUL01000057 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1332 NA genomic_DNA NA 2362-75 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 670897 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUL01000057.1 ATGCAACCGTCCAGAAACTTTGATGATCTTAAATTCTCCTCTATTCACCGCCGCATTTTGCTGTGGGGAAGCGGTGGTCCGTTTCTGGATGGTTATGTACTGGTAATGATTGGCGTGGCGCTGGAGCAACTGACTCCGGCGCTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGCTATATCTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTCTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTTATCGGTGCGGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCGATGTGGTATGTCGGCGCGACCTGCGCCGATTTGGTCGGCTATTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCAGCGATTCCCTGTTTATTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTGTTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATAAAACTGTTTGGCGAACCGGTGGCTTTCGAGGAAGAGCAGCCGCAGCAAACCCGTTTTCGCGATCTGTTTAATCGCCGCCATTTTCCTTTTGTTCTGTTTGTTGCCGCCATCTGGACCTGCCAGGTGATCCCAATGTTCGCCATTTACACCTTTGGCCCGCAAATCGTTGGTTTGTTAGGATTGGGGGTTGGCAAAAACGCGGCGCTGGGGAACGTGGTGATTAGTCTGTTCTTTATGCTCGGCTGTATTCCGCCGATGCTGTGGCTAAACACTGCCGGACGGCGTCCATTGTTGATTGGCAGCTTTGCCATGATGACGCTGGCGCTGGCGGTTTTGGGGCTGATCCCGGATATGGGGATCTGGCTGGTAGTGATGGCCTTTGCGGTGTATGCCTTTTTCTCTGGTGGGCCGGGTAATTTGCAGTGGCTCTATCCTAATGAACTCTTCCCGACGGATATCCGCGCCTCTGCCGTGGGCGTGATTATGTCCTTAAGCCGTATTGGCACTATTGTATCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTGTTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAGACCAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAA > 556 NRG857_00235 COG0477_Permeases_of_the_major_facilitator_superfamily putative_transporter ADR25478.1 11 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFEEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG gamma_subgroup Escherichia_coli_O83:H1_str._NRG_857C Escherichia_coli_O83:H1_str._NRG_857C CP001855 47752..49083 Allen,C.A.,_Niesel,D.W._and_Torres,A.G. NA 0:1332 Bacterium_available_from_Laboratory_for_Foodborne_Zoonoses,_110Stone_Road_West,_Guelph,_Ontario_N1G_3W4,_CanadaGenome_was_manually_curated_based_on_annotation_generated_by_theNCBI_Prokaryotic_Genomes_Automatic_Annotation_Pipeline_Group.Information_about_the_Pipeline_can_be_found_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. NA 21-NOV-2011 Escherichia_coli_O83:H1_str._NRG_857C,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E4P357_ECO8N.gb Escherichia_Castellani_and_Chalmers_1919 312944605 Environ._Microbiol._10_(6),_1512-1525_(2008) NA CP001855 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18312396 1332 NA genomic_DNA 685038 NRG_857C NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 685038 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_effects_of_low-shear_stress_on_Adherent-invasive_Escherichia_coli NA CP001855.1 ATGCAACCGTCCAGAAACTTTGATGATCTTAAATTCTCCTCTATTCACCGCCGCATTTTGCTGTGGGGAAGCGGTGGTCCGTTTCTGGATGGTTATGTACTGGTAATGATTGGCGTGGCGCTGGAGCAACTGACTCCGGCGCTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGCTATATCTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATTGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTCTCATCCCCCGTCGAACTGTTGGTGATGCGGGTACTTATCGGCATTGTTATCGGTGCGGATTATCCCATCGCCACCTCAATGATCACCGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATCGCCGCGATGTGGTATGTCGGCGCGACCTGCGCCGATTTGGTCGGCTATTGGCTTTATGATGTGGAAGGCGGCTGGCGCTGGATGCTGGGTAGCGCAGCGATTCCCTGTTTATTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTGTTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATAAAACTGTTTGGCGAACCGGTGGCTTTCGAGGAAGAGCAGCCGCAGCAAACCCGTTTTCGCGATCTGTTTAATCGCCGCCATTTTCCTTTTGTTCTGTTTGTTGCCGCCATCTGGACCTGCCAGGTGATCCCCATGTTTGCCATTTACACCTTTGGCCCGCAAATCGTTGGTTTGTTAGGATTGGGGGTTGGCAAAAACGCGGCGCTGGGGAACGTGGTGATTAGTCTGTTCTTTATGCTCGGCTGTATTCCGCCGATGCTGTGGCTAAACACTGCCGGACGGCGTCCATTGTTGATTGGCAGCTTTGCCATGATGACGCTGGCGCTGGCGGTTTTGGGGCTGATCCCGGATATGGGGATCTGGCTGGTAGTGATGGCCTTTGCGGTGTATGCCTTTTTCTCTGGTGGGCCGGGTAATTTGCAGTGGCTCTATCCTAATGAACTCTTCCCGACGGATATCCGCGCCTCTGCCGTGGGCGTGATTATGTCCTTAAGCCGTATTGGCACTATTGTATCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTGTTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAGACCAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAA > 557 NRG857_13550 COG0477_Permeases_of_the_major_facilitator_superfamily major_facilitator_superfamily_MFS_1 ADR28123.1 11 MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFMLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRRFLLGSFLLLTATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQATLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV gamma_subgroup Escherichia_coli_O83:H1_str._NRG_857C Escherichia_coli_O83:H1_str._NRG_857C CP001855 2847417..2848826 Allen,C.A.,_Niesel,D.W._and_Torres,A.G. NA 0:1410 Bacterium_available_from_Laboratory_for_Foodborne_Zoonoses,_110Stone_Road_West,_Guelph,_Ontario_N1G_3W4,_CanadaGenome_was_manually_curated_based_on_annotation_generated_by_theNCBI_Prokaryotic_Genomes_Automatic_Annotation_Pipeline_Group.Information_about_the_Pipeline_can_be_found_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. NA 21-NOV-2011 Escherichia_coli_O83:H1_str._NRG_857C,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E4P5B7_ECO8N.gb Escherichia_Castellani_and_Chalmers_1919 312944605 Environ._Microbiol._10_(6),_1512-1525_(2008) NA CP001855 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18312396 1410 NA genomic_DNA 685038 NRG_857C NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 685038 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_effects_of_low-shear_stress_on_Adherent-invasive_Escherichia_coli NA CP001855.1 TTAAACGCTAACAGAATGTTCATTCGCACCTCCTACATTTCCCGCCGCCACCAGCGGGAGTGCTTTGGTTTCTGGTGCCCATAGCCAGGTCACAACAAAACCAACCAACAACACTGCCGCCAGGAGCAATAAGGTGGCTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCCCCCAACCGACTCATGGCGGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAACAGGCCATTACTACCAGCGTTGCCGTTAGCAGCAAAAAACTTCCCAGTAAAAATCTGCGATGCGCTAACAAGTGGGTCAACACTAACCCTAATAACGCGCCAACAATTAACAACGCATTAAGCATCAGGCTGGCAGTCAGCGCATCTTCCAGACCAATAGTTTGGGCGATGGTCGGCAGCCAGGTATAAATCACAAACCATGGGATTACGAGGCAGACAAAGAAGACGCTGTTAAACGCCGTGCGCCGCCAGTAGCGCGAAGAGAACAAGGTTTTGATGTGTTTATGGGTCGCCGTTGCCACTTCATCGCCCAGTAAAACATGCGGGCCAAAATAGCGATGAACGATAGCGTGAGCTTCTGCAAAACGCCCCTGGCGCAGTAGCCAGCGTGGCGATTCCGGCGTGCCCCAACGTAGCAGCGTAATCAGCAAGGCTGGTAACGCTGCTGATGCCAGCAGCCAGCGCCAGGCCTCCGGGCTTTCGGAAATAAAGTGATGTCCGGCAATACTTGCCAGCACATAGCCTACGGTCCACACCACACTGAATGCGCCCAGCAAAATACCGCGATGGCGGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCGACTGAGTAATCGCCTCCCAGCCCAATGCCGATCAAAATGCGCAATCCAATAAGATGCTCTGGCGTGGTGGCAAAAAACTGTAAAAACGAAGCAAGCGTAATCAGCATAAAACTGAAGGTGAAGATTTTTTGCCGCCCGATATGGTCGGAGATCCATCCAAGAACCAGGCTGCCAAGAAACAAACCAAGGAGTGCTGAGCCGCCAATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGGACATAACCGTCGGTCAGGTGCGCACCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGTGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCAT > 558 HMPREF9539_00334 KEGG:_lre:Lreu_0479_3.3e-12_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFU49053.1 11 MTAIVNETVSVKKKPSGRRVIFASAFGNALEFFDFGVYNFFVVYISTLFFPPSADHNVALLLAFATFGVSFFMRPLGGIIVGAWADRFGRKPAMVFTIALMSLGTLMIGIAPTYETAGYWGTATLVLARLIQGVAAGGEVGASMSLLVESAPANRRGFYSSWSLATQGLATTFGGVVALGLSAWLPFATGSETVMAEWGWRVPFFIGVLLAPIGCWLRLSLENDVPEPVRNKKAATSESAFSLLLQHKATIVNGVLLAIGSTVATYISLFYYGTWAAKYLAMPQHYSHAAMLLAGVITFVGALLVGMLCDSVGRKKLILISRVMVLLCSWPSFWLLVNYPSPGMLLTVVFVMVSFTTLGGVPVMLLISELLPKRIRALGFALVYSIGVAIFGGFAQYFATQSIVLLDSLTAPAWYLGGGTLLSMLALLYVKEPAKELQ gamma_subgroup Escherichia_coli_MS_110-3 Escherichia_coli_MS_110-3 ADTW01000020 5323..6639 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1317 Escherichia_coli_110-3_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_110-3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_56.8xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 21-DEC-2010 Escherichia_coli_MS_110-3_E_coli110-3-1.0_Cont44.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E5ZMI0_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296497722 Submitted_(17-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTW01000020 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1317 NA genomic_DNA NA MS_110-3 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749536 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTW01000020.1 TTACTGCAATTCTTTGGCCGGTTCTTTTACGTACAACAACGCCAGCATCGACAGCAACGTGCCTCCCCCCAGATACCACGCCGGAGCCGTCAGACTATCCAGCAACACGATGGATTGCGTGGCGAAATATTGCGCAAAACCGCCAAAGATTGCTACGCCAATGCTATAAACCAGCGCGAAACCTAATGCCCGAATCCGTTTCGGCAACAGTTCAGAGATCAACAACATCACTGGCACACCGCCAAGCGTGGTAAAGCTGACCATCACGAAAACCACCGTCAGCAACATGCCAGGGCTTGGGTAATTCACCAACAGCCAGAATGACGGCCAGCTACAGAGAAGCACCATCACACGGGAGATTAAAATCAGCTTTTTACGCCCAACCGAATCACATAGCATCCCCACCAACAGCGCACCCACAAACGTAATTACCCCCGCCAGTAACATCGCTGCATGAGAATAATGTTGAGGCATCGCCAGATACTTCGCCGCCCAGGTGCCGTAATAAAAGAGGGAGATATAGGTTGCGACCGTGCTACCAATAGCGAGTAAAACGCCATTAACGATAGTCGCCTTATGTTGCAGGAGCAGAGAAAACGCGCTTTCGCTGGTAGCAGCTTTTTTATTGCGCACTGGCTCAGGTACGTCATTTTCCAGGCTCAGACGCAACCAGCAACCGATAGGTGCTAATAACACGCCAATAAAAAACGGCACACGCCAGCCCCATTCTGCCATTACGGTTTCTGAACCTGTGGCGAACGGTAGCCATGCGCTCAGACCTAAAGCAACAACCCCACCGAAGGTCGTTGCCAGCCCTTGGGTCGCCAGTGACCAACTGCTGTAAAAGCCGCGACGATTTGCCGGAGCTGACTCCACCAGTAGCGACATTGAAGCCCCGACTTCACCACCTGCCGCAACGCCCTGAATTAGACGCGCCAGCACCAGCGTTGCAGTTCCCCAATAGCCCGCCGTTTCATACGTCGGTGCGATGCCGATCATCAGCGTACCGAGGCTCATCAGAGCAATAGTGAACACCATCGCCGGTTTACGCCCGAAGCGATCGGCCCAGGCACCAACGATAATCCCACCGAGCGGACGCATAAAAAAGCTCACACCAAACGTTGCAAATGCCAGTAACAGCGCGACGTTATGATCGGCACTGGGTGGGAAGAAAAGCGTACTGATATAGACCACAAAAAAGTTGTAAACGCCAAAATCAAAAAATTCGAGCGCATTGCCAAACGCCGAGGCAAAGATCACCCGCCTGCCGCTGGGCTTTTTCTTCACACTCACGGTTTCATTTACGATCGCCGTCAT > 559 HMPREF9539_00523 KEGG:_ecl:EcolC_0771_2.4e-244_sugar_transporter_K08137;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_sugar_porter_family_protein EFU48883.1 11 MPDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTSAEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGVLLQIMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERNLMKGRKLREIGAHD gamma_subgroup Escherichia_coli_MS_110-3 Escherichia_coli_MS_110-3 ADTW01000039 30..1424 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1395 Escherichia_coli_110-3_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_110-3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_56.8xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 21-DEC-2010 Escherichia_coli_MS_110-3_E_coli110-3-1.0_Cont73.5,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E5ZN14_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296497703 Submitted_(17-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADTW01000039 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1395 NA genomic_DNA NA MS_110-3 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749536 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADTW01000039.1 TTAATCGTGAGCGCCGATTTCGCGCAGTTTACGACCTTTCATCAGATTACGTTCAATATGTTCCAGCGAAACATGTTTGGTTTCCGGTACCAGCCACAATGTCAGCAGGATAAACAGTACGTTCAGAGCAGCATACACCCAGAAGGTGTTGGCGTTACCCAGCGTGTTGAGCATGGTCAGGAACGTTGCGCCAACGATCATGTTGGCAATCCAGTTGGTGGCAGTGGAGCAGGTGATGCCAAAATCGCGGCCTTTCAGCGGCTGAATTTCGGAGCACAGTACCCAAATCAGCGGACCAGCACTCATGGCAAAACCGACAATAAACATCAGCAGCATGGCGATGGCGAAATACTGCGCCGACGGAGAGTGGATACCGATATGCATCATTGTACCGAGTACGCCCATACCAGCAGCCATCACCAGGAAGCCCAGCGTTAGCGTTGGTTTACGTCCCCAGCGGTCAACAAGGCCGATTGCGATAAAGGTGGCAAGTACGTTGGTCAGGCCGACAATCACTGTCCCCCACATTTGCTCGGTGGTGTTGGTATAACCCGCCAGTTCGAAGATTTTCGGCGCGTAATACATGATGACGTTCATCCCGGTGAATTGCTGCATTATCTGCAATAGTACGCCAAGGAACACCGCGCGGCGGAAGTTGCTGTTCTCTTTAAACAGCGCCCAGCCACTCTGTTTAACCTGCAAACTTTCACGGATTTCATCCAGTTCGCGTTTCGCTTCCGCGCTGGTGTCACGCAGGCGTAGCAGCACGCGTTCGGCATCAACAAAACGGCGTTTGGCGGCAAACCAACGTGGGCTGTCTGGCAGGAAGAAGACACCAATCAGCAGCAAAATTGCCGGGATGATAATCACACCCAGCATCCAGCGCCATGCACCGGTGTAGCTGAAGGCGGTATCAGAAAGATAAGCGCCGAGGATCCCGATAGTGATCATCAACTGATACATCGAGATCATACTGCCGCGAATTTTTTCCGGCGCAATTTCTGACAGGTACAGTGGTGCGGTATAAGAGGCCACACCCACCGCCAGCCCCAGCAGAACGCGGGAAAGAATCAGTACTTCAACGTTTGGCGCAGCCGCAGAGAACAGTGAACCGGCAACAAACAGGATTGCGCCGATCATCAGGCTCTTTTTGCGCCCGAGTTTAAAGGAGAGCCAGCCGCTGCCCACCGCACCGACTGCCGCACCGAACATCATGGAGCTTACGACCCATTCTTGCGTGTGCGAAGTAATCTGGAATTCATCTGCAATAAACGGCAGTGCGCCAGCAATTACACCGATATCCAGGCCAAAGAGTAATCCCGCCAGAGCGGCAAGGAAGCAGACGAAAAACGTCATTGCCTTGTTTGACCGCCCCTGTTTTTTAGCGTCAGGCAT > 560 HMPREF9545_00307 KEGG:_rcm:A1E_04550_5.4e-15_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_metabolite:H+_symporter_family_protein EFU59852.1 11 MDSTLISTRPDEGTLSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLGALWVRNGMEESAEFEQQQHNQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALITYFAGNWHSVAIYLLAGCLISAMTALLMKDNQRA gamma_subgroup Escherichia_coli_MS_16-3 Escherichia_coli_MS_16-3 ADUA01000040 28..1344 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1317 Escherichia_coli_16-3_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_16-3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_59.5xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 21-DEC-2010 Escherichia_coli_MS_16-3_E_coli16-3-1.0_Cont90.4,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E6AIB9_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296499558 Submitted_(17-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADUA01000040 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1317 NA genomic_DNA NA MS_16-3 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749542 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUA01000040.1 TCAAGCGCGTTGATTGTCTTTCATCAACAAAGCGGTCATTGCGGAAATCAGGCATCCAGCCAGCAAATAAATAGCGACGCTATGCCAGTTCCCGGCAAAGTAAGTGATGAGTGCAGCGGCAATAAAAGGTGTAAATCCACCGCCAACCACACTGGCAACCTGATAACCGACGCCAGCACCACTGTAGCGATAACTGGCACCAAACATTTCGGTAAACATCGGTTGTTGCACACACACCACCATGTCATGCGCAATGTTTGCCAGCATTATGGAGAAGAAAACTATCCAGAAAATAGATTGTGCTTCAAGCGCCATAAAGAAAGGAAATGCGCTCAACGTTCCGATCAACGCGCCTGTGATATAAACCCTGCGCCGACCAAAACGATCGGCAAGCCAGGCAAAACAGGGAATTGTCAGGCAGCTTAATCCACCTACCAGCAAACCAATATTAAGGAAAAGTTCGCGCGGTAACCCCATATTCTGGGTTGAATAATTAAGTGCAAAGGCAGTAACAATGTACATCGTCAGCAACTCGCACAGTCGTAGTGCAATAATCTTCAGGAAAGCACCGGGATGTCGTAACAGAGCTTCGATAACCGGGATGCGTTTTTTCGCGGCCGCTTGATTATGTTGCTGTTGTTCAAATTCCGCGGACTCCTCCATGCCATTGCGCACCCACAATGCTCCCAGTACCAGTACGATGCTAAACAGGAAAGGAATGCGCCAGCCCCAGCTTAAAAACTGTTCGTCAGTCGTCATCATACTGATCAATGAAACCAGTCCGGTTGAAAGCAGTAAACCTACTCCGTAGCCAACTTGTACACCGCTACTGTAAAAGGCTTTTTTATTTTTCGGCGCACTTTCAACGGAAAGCAACGCTGCGCCTCCCCATTCGCCGCCGACGGCAAATCCCTGAATGGCACGCAGTGTCACCAGCAAAATAGGTGCCCACCACCCAATGGTCGAGAATGAAGGAAGAATACCAATCAAGGCTGTCGCGATGCCCATCATCCAGACGGTCAGCATTAACATGCGCTTACGTCCCAGCCGGTCACCAAAGTGACCGAAAATGACACCGCCGAGCGGTCGGAAAAGGAAGCCGACACCAAAGGTGGCAAATGCGGCGAGCGTTCCCATCGCCGGGCTTACTTGCGGGAAAAACTCGCGATTAAACACCAGTGCGGCGGTAATGCCATAGAGTAAAAAATCATACCAGTCGACGACGGCACCAGCGAAACTGCCTAACGCAGCTCGTCGGGCGCGACTTAACGAAAGCGTCCCTTCATCGGGACGAGTGGAGATGAGCGTGGAGTCCAT > 561 HMPREF9545_02468 KEGG:_lre:Lreu_0479_3.3e-12_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFU57742.1 11 MTAIVNETVSVKKKPSGRRVIFASAFGNALEFFDFGVYNFFVVYISTLFFPPSADHNVALLLAFATFGVSFFMRPLGGIIVGAWADRFGRKPAMVFTIALMSLGTLMIGIAPTYETAGYWGTATLVLARLIQGVAAGGEVGASMSLLVESAPANRRGFYSSWSLATQGLATTFGGVVALGLSAWLPFATGSETVMAEWGWRVPFFIGVLLAPIGCWLRLSLENDVPEPVRNKKAATSESAFSLLLQHKATIVNGVLLAIGSTVATYISLFYYGTWAAKYLAMPQHYSHAAMLLAGVITFVGALLVGMLCDSVGRKKLILISRVMVLLCSWPSFWLLVNYPSPGMLLTVVFVMVSFTTLGGVPVMLLISELLPKRIRALGFALVYSIGVAIFGGFAQYFATQSIVLLDSLTAPAWYLGGGTLLSMLALLYVKEPAKELQ gamma_subgroup Escherichia_coli_MS_16-3 Escherichia_coli_MS_16-3 ADUA01000192 5314..6630 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1317 Escherichia_coli_16-3_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_16-3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_59.5xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 21-DEC-2010 Escherichia_coli_MS_16-3_E_coli16-3-1.0_Cont244.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E6APC9_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296499406 Submitted_(17-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADUA01000192 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1317 NA genomic_DNA NA MS_16-3 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749542 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUA01000192.1 TTACTGCAATTCTTTGGCCGGTTCTTTTACGTACAACAACGCCAGCATCGACAGCAACGTGCCTCCCCCCAGATACCACGCCGGAGCCGTCAGACTATCCAGCAACACGATGGATTGCGTGGCGAAATATTGCGCAAAACCGCCAAAGATTGCTACGCCAATGCTATAAACCAGCGCGAAACCTAATGCCCGAATCCGTTTCGGCAACAGTTCAGAGATCAACAACATCACTGGCACACCGCCAAGCGTGGTAAAGCTGACCATCACGAAAACCACCGTCAGCAACATGCCAGGGCTTGGGTAATTCACCAACAGCCAGAATGACGGCCAGCTACAGAGAAGCACCATCACACGGGAGATTAAAATCAGCTTTTTACGCCCAACCGAATCACATAGCATCCCCACCAACAGCGCACCCACAAACGTAATTACCCCCGCCAGTAACATCGCTGCATGAGAATAATGTTGAGGCATCGCCAGATACTTCGCCGCCCAGGTGCCGTAATAAAAGAGGGAGATATAGGTTGCGACCGTGCTACCAATAGCGAGTAAAACGCCATTAACGATAGTCGCCTTATGTTGCAGGAGCAGAGAAAACGCGCTTTCGCTGGTAGCAGCTTTTTTATTGCGCACTGGCTCAGGTACGTCATTTTCCAGGCTCAGACGCAACCAGCAACCGATAGGTGCTAATAACACGCCAATAAAAAACGGCACACGCCAGCCCCATTCTGCCATTACGGTTTCTGAACCTGTGGCGAACGGTAGCCATGCGCTCAGACCTAAAGCAACAACCCCACCGAAGGTCGTTGCCAGCCCTTGGGTCGCCAGTGACCAACTGCTGTAAAAGCCGCGACGATTTGCCGGAGCTGACTCCACCAGTAGCGACATTGAAGCCCCGACTTCACCACCTGCCGCAACGCCCTGAATTAGACGCGCCAGCACCAGCGTTGCAGTTCCCCAATAGCCCGCCGTTTCATACGTCGGTGCGATGCCGATCATCAGCGTACCGAGGCTCATCAGAGCAATAGTGAACACCATCGCCGGTTTACGCCCGAAGCGATCGGCCCAGGCACCAACGATAATCCCACCGAGCGGACGCATAAAAAAGCTCACACCAAACGTTGCAAATGCCAGTAACAGCGCGACGTTATGATCGGCACTGGGTGGGAAGAAAAGCGTACTGATATAGACCACAAAAAAGTTGTAAACGCCAAAATCAAAAAATTCGAGCGCATTGCCAAACGCCGAGGCAAAGATCACCCGCCTGCCGCTGGGCTTTTTCTTCACACTCACGGTTTCATTTACGATCGCCGTCAT > 562 HMPREF9545_04263 KEGG:_efe:EFER_2667_6.3e-11_hexuronate_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFU55978.1 11 MSPCENDTPINWKRNLIVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGIVFSITFLFSAIASPFWGGLADRKGRKLMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPMAGGLLADSYGLRPVFFITASVLILCFFVTLFCIREKFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNVAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSYVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRRRIPQISN gamma_subgroup Escherichia_coli_MS_16-3 Escherichia_coli_MS_16-3 ADUA01000314 20271..21497 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1227 Escherichia_coli_16-3_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA)._Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Demonstration_Project_-Effect_ofCrohns_Disease_Risk_Alleles_on_Enteric_Microbiota_is_funding_thesequence_characterization_of_the_Escherichia_coli_16-3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_59.5xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 21-DEC-2010 Escherichia_coli_MS_16-3_E_coli16-3-1.0_Cont357.2,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E6AUE4_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 296499284 Submitted_(17-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADUA01000314 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1227 NA genomic_DNA NA MS_16-3 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 749542 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUA01000314.1 TCAGTTCGATATCTGGGGGATTCGACGACGACGTAGACTGTTCCATGAATAGACTGCGTTGAATAACACTACGCCAGCGGTGACGAGAAATACCGCCCTGAAACCGTAGTTCGCTGAAATCGCTGCTCCCATCAATGGTCCGGTAACGTTGCCAATATCACGAAACGATTGGTTATAGCTGAAGATACGCCCGGCGATCTGGTTGCTCGAGTTGTAAACCAACAGTGTCTGTACGGCGGGGAGTAATGCACCATCGGCGGCACCGAGCAAAAAACGTAAAATCCCAAGTTGTAATGGCGTCTGAACGTAAGACATTGGGATCAACAGCAGTACAGAAAAGATCAGCGCCGTAATCAGGATCTTTTCGGGGCCGATTCGATCGCCAAGTTTGCCGAGTCGTGGTGCACTTAGCAGAGCCGCCACGCCTGGCACCGAGGCGATCATGCCACTGATAAAAGCGACGTTACTGACGTTACCCGCCAGTTCGCGGACATACAGCGTCAGAATGGGGGCAATTGAGCCCGTCGCCACCTGGATGATTAACGTGGTGACAAACAGGCTGAGTACCAGTTTCGGGTTTTTAAGTGATGTCACCACTTCCCGCATATGCAGCATCTCTTTTTTGCTGACCGGCTGGAATTTTTCTCTGATGCAAAACAGGGTGACGAAAAAGCAGAGTATGAGCACACTGGCGGTAATAAAGAATACCGGACGTAAGCCGTAGCTATCGGCGAGCAAACCGCCAGCCATTGGGCCGAGCAACGCGCCGCTAACGCCGCCTGTGGAGAGCGTACCCAGCGCCCAGCCGCTTTTATTACGCGGTACTTGTGTGGCGATAAGAGCATTAGCGTTGGGGACAAATCCGCCAAGTAAACCAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAGAGCAGAGCGTAATAGCATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGGCCGGTAACGCCAAGCTGCTCAACGTAGAGGGGTAAGAAGGGCATTACCAGGCTGAAGGCGGCACCGGTAAGAAAACAGCCTAGCCAGGCGACGATCAGGTTTCGTTTCCAGTTTATAGGGGTGTCATTTTCACAGGGTGACAT > 563 EC3431_2314 NA proline/betaine_transporter EFU98096.1 11 MGQLCEESYAEKEKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKYWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVVGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYDNIEQKIDDIDHEIADLQAKRTRLVQQHPRIDE gamma_subgroup Escherichia_coli_3431 Escherichia_coli_3431 ADUM01000089 154856..156382 Rasko,D.,_Redman,J.,_Daugherty,S.C.,_Tallon,L.,_Sadzewicz,L.,_Jones,K.,_Santana-Cruz,I._and_Liu,X. NA 0:1527 ##Genome-Assembly-Data-START##Assembly_Method_::_Celera_assembler_v._6.0Genome_Coverage_::_25xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 29-DEC-2010 Escherichia_coli_3431_gec3431.assembly.65,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E6B422_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 315617343 Submitted_(17-DEC-2010)_Institute_for_Genome_Sciences,_The_University_of_Maryland_School_of_Medicine,_801_W._Baltimore_St,_Baltimore,_MD_21201,_USA NA ADUM01000089 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1527 NA genomic_DNA NA 3431 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 670892 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADUM01000089.1 ATGGGCCAACTCTGCGAGGAAAGCTATGCTGAAAAGGAAAAAGTAAAACCGATTACCCTTCGTGATGTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGGGGCTGACCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCACTATTGTGATTATGTCGATCAGTACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTGAATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGCTTTATGGGCAGCTGGCTGGACTTCGGTTCTATTGCCGGGTTTGTGCTGGGTGCGGGCGTGGTGGTGTTAATTTCGACCATTGTCGGCGAAGCGAACTTCCTCGATTGGGGCTGGCGTATTCCGTTCTTTATCGCTCTGCCGTTAGGGATTATCGGGCTTTACCTGCGCCATGCGCTGGAAGAGACTCCGGCGTTCCAGCAGCATGTCGATAAACTGGAACAGGGCGACCGTGAAGGTTTGCAGGATGGCCCGAAAGTCTCGTTTAAAGAGATTGCCACTAAATACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCACGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCTGTTTGTGTTGGCGATCCCGGCGTTTATTCTGATTAACAGTAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTACGGGCGTTATGGCTTCTACCTTGCCAGCGATGTTCCCGACGCATATCCGTTACAGCGCGCTGGCGGCGGCATTTAATATTTCGGTGCTGGTTGCCGGTCTGACGCCAACGCTGGCGGCCTGGCTGGTCGAAAGCTCGCAGAATCTGATGATGCCTGCCTATTACCTGATGGTAGTGGCGGTGGTTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAA > 564 HMPREF9350_02300 KEGG:_cal:orf19.4384_1.0e-14_HXT10;_fructose_symporter_K01804;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFU35647.1 11 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG gamma_subgroup Escherichia_coli_MS_85-1 Escherichia_coli_MS_85-1 ADWQ01000008 31299..32630 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1332 Escherichia_coli_85-1_(No_16S_rRNA_gene_available)_is_a_member_ofthe_Proteobacteria_division_of_the_domain_bacteria_and_has_beenisolated_from_the_gut.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Bacteria_provided_by_Edgar_C._Boedeker,_MD_(Division_ofGastroenterology,_Department_of_Internal_Medicine,_1_University_ofNew_Mexico,_MSC10-5550,_Albuquerque,_NM_87131,_USA)._Funded_by_theNIAID_Enteric_Pathogens_Research_Unit_at_the_University_ofMaryland,_Baltimore_(EPRU;_contract_no._NO1-AI-30055)._Source_DNAprovided_by_Phillip_I._Tarr,_MD_(Division_of_Gastroenterology_andNutrition,_Department_of_Pediatrics,_Washington_University_Schoolof_Medicine,_Campus_Box_8208,_660_S._Euclid,_St._Louis,_MO_63110,USA).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.Funded_by_Effect_of_Crohns_Disease_Risk_Alleles_on_EntericMicrobiota_(UH2_DK083994_to_Ellen_Li,_MD,_PhD_(Division_ofGastroenterology,_Washington_University_School_of_Medicine,_CampusBox_8124,_660_S._Euclid,_St._Louis,_MO_63110,_USA)).Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_Improved_High-Quality_DraftCurrent_Finishing_Status_::_Improved_High-Quality_DraftAssembly_Method_::_Velvet_v._2.1-PreRelease-4/28/2009Genome_Coverage_::_11.8xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 20-DEC-2010 Escherichia_coli_MS_85-1_E_coliMS85-1-1.0.1_Cont7.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_E6BJ49_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 299876998 Submitted_(22-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADWQ01000008 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1332 NA genomic_DNA NA MS_85-1 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 679202 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Direct_Submission NA ADWQ01000008.1 TTACCCCATTCTCTGCCCGCGGATCGTCATATTGCTGGTCTGCGCCAGTGACATCCCTCGAGTCTCCGGGGCAAACGCTACGGAAATCAACAAGCCAAACAGCGAGATACCCGCCCCCATTAGCATCGTGTTACTGATACCGTAATTATTGATAAAGATCGGCAGTGCCCAGGTCGAAACAATGGTGCCAATACGGCTTAAGGACATAATCACGCCCACGGCAGAGGCGCGGATATCTGTCGGGAAGAGTTCATTAGGATAGAGCCACTGCAAATTACCCGGCCCGCCAGAGAAAAAGGCATACACCGCAAAGGCCATCACTACCAGCCAGATCCCCATATCCGGGATCAGCCCCAAAACCGCCAGCGCCAGCGTCATCATGGCAAAGCTGCCAATCAACAATGGACGCCGTCCGGCAGTGTTTAACCACAGCATCGGCGGAATACAGCCGAGCATAAAGAACAGGCTAATCACCACGTTCCCCAGTGCCGCGTTTTTGCCAACCCCCAATCCCAACAAACCAACGATTTGCGGGCCAAAGGTGTAAATGGCGAACATTGGGATCACCTGGCAGGTCCAGATGGCGGCAACAAACAGAACAAAAGGAAAATGGCGGCGATTAAACAGATCGCGAAAACGGGTTTGCTGCGGCTGCTCTTCATCGAAAGCCACCGGTTCGCCAAACAGTTTTATCATCATCTCTTCGCACTCTTTTACTCGCCCTTTGCGTAATAACCAGCGGGGAGATTCAGGCAGTTCGAATCGACCAATCAAAATCAACAAACAGGGGATCGCCGCGCTACCCAGCATCCAGCGCCAGCCGCCTTCCACATCATAAAGCCAGTAGCCGACCAGATCGGCGCAGGTCGCGCCGACATACCACATGGCGGCGATAAAGCTGATGGAAAACGCCCGCTGACGGGTACTGGAGAACTCGGTGATCATTGAGGTGGCGATGGGATAATCTGCACCGATGACAATGCCGATAAGTACCCGCATCACCAACAGTTCGACAGGGGATGAGACAAACATCGTCGCCACCGATATCACGCCGATGGCGATGATATCAATGAGGAACATTTTGCGCCGTCCGACTTTATCGGAGATATAGCCAAACAGCGATGTGCCAACGAACAGCCCGGCGAGCGTTCCCGCACCCAGCAAGCCAATCCAGTCAGCGTCCAGTTTCAGCGCCGGAGTCAGTTGCTCCAGCGCCACGCCAATCATTACCAGTACATAACCATCCAGAAACGGACCACCGCTTCCCCACAGCAAAATGCGGCGGTGAATAGAGGAGAATTTGAGATCGTCAAAGTTTCTGGACGGTTGCAT > 565 c1319 Confers_resistance_to_fosfomycin_and_deoxycholate drug_efflux_system_protein_MdtG NP_753232.1 11 MSPCENDTPINWKRNLIVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGIVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPMAGGLLADSYGLRPVFFITASVLILCFFVTLFCIREKFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNVAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSYVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRRRIPQISN gamma_subgroup Escherichia_coli_CFT073 Escherichia_coli_CFT073 NC_004431 1257763..1258989 Welch,R.A.,_Burland,V.,_Plunkett,G._III,_Redford,P.,_Roesch,P.,_Rasko,D.,_Buckles,E.L.,_Liou,S.R.,_Boutin,A.,_Hackett,J.,_Stroud,D.,_Mayhew,G.F.,_Rose,D.J.,_Zhou,S.,_Schwartz,D.C.,_Perna,N.T.,_Mobley,H.L.,_Donnenberg,M.S._and_Blattner,F.R. NA 0:1227 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE014075.COMPLETENESS:_full_length. NA 20-JAN-2012 Escherichia_coli_CFT073_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_MDTG_ECOL6.gb Escherichia_Castellani_and_Chalmers_1919 26245917 Proc._Natl._Acad._Sci._U.S.A._99_(26),_17020-17024_(2002) NA NC_004431 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 12471157 1227 NA genomic_DNA NA CFT073 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 199310 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Extensive_mosaic_structure_revealed_by_the_complete_genome_sequence_of_uropathogenic_Escherichia_coli NA NC_004431.1 TCAGTTCGATATCTGGGGGATTCGACGACGACGTAGACTGTTCCATGAATAGACTGCGTTGAATAACACTACGCCAGCGGTGACGAGAAATACCGCCCTGAAACCGTAGTTCGCTGAAATCGCTGCTCCCATCAATGGTCCGGTAACGTTGCCAATATCACGAAACGATTGGTTATAGCTGAAGATACGCCCGGCGATCTGGTTGCTCGAGTTATAAACTAATAGTGTCTGTACGGCGGGGAGTAGTGCACCATCGGCGGCACCGAGCAAAAAACGTAAAATCCCAAGTTGTAATGGCGTCTGAACGTAAGACATTGGGATCAACAGCAGTACAGAAAAGATCAGCGCCGTAATCAGGATCTTTTCGGGGCCGATTCGATCGCCAAGTTTGCCGAGTCGTGGTGCACTTAGCAGAGCCGCCACGCCTGGCACCGAGGCGATCATGCCACTGATAAAGGCGACGTTACTGACGTTACCCGCCAGTTCGCGGACATACAGCGTCAGAATGGGGGCAATTGAGCCCGTCGCCACCTGGATGATTAACGTGGTGACAAACAGGCTGAGTACCAGTTTCGGGTTTTTAAGTGATGTCACCACTTCCCGCATATGCAGCATCTCTTTTTTGCTGACCGGCTGGAATTTTTCTCTGATGCAAAACAGGGTGACGAAAAAGCAGAGTATGAGCACACTGGCGGTAATAAAGAATACCGGACGTAAGCCGTAGCTATCGGCGAGCAAACCGCCAGCCATTGGGCCGAGCAACGCGCCGCTAACGCCGCCTGTGGAGAGCGTACCCAGCGCCCAGCCGCTTTTATTACGCGGTACTTGTGTGGCGATAAGAGCATTAGCGTTGGGGACAAATCCGCCAAGTAAACCAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAGAGCAGAGCGTAATAGCATGATTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTGAAGACAATACCGGACCACATATTCAGGGCGGAGTGGCCGGTAACGCCAAGCTGCTCAACGTAGAGGGGTAAGAAGGGCATTACCAGGCTGAAGGCGGCACCGGTAAGAAAACAGCCTAGCCAGGCGACGATCAGGTTTCGTTTCCAGTTTATAGGGGTGTCATTTTCACAGGGTGACAT > 566 ECs4097 similar_to_NANT_ECOLI_gi|1789618_(conserved_in_Escherichia_coli_K-12) sialic_acid_transporter NP_312124.2 11 MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLACGFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILYRGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCTAIFISFMVQSTGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNDLVKTKS gamma_subgroup Escherichia_coli_O157:H7_str._Sakai Escherichia_coli_O157:H7_str._Sakai NC_002695 4106331..4107821 Bergholz,T.M.,_Wick,L.M.,_Qi,W.,_Riordan,J.T.,_Ouellette,L.M._and_Whittam,T.S. NA 0:1491 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_BA000007.COMPLETENESS:_full_length. NA 25-JAN-2012 Escherichia_coli_O157:H7_str._Sakai_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_NANT_ECO57.gb Escherichia_Castellani_and_Chalmers_1919 15829254 BMC_Microbiol._7,_97_(2007) NA NC_002695 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 17967175 1491 NA genomic_DNA NA Sakai NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 386585 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Global_transcriptional_response_of_Escherichia_coli_O157:H7_to_growth_transitions_in_glucose_minimal_medium NA NC_002695.1 TTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTAAATGGTTTGCCGTCGATAGCGTCATGAGTACGCAACGCTTCCGGGCGCAGCCAACGCTGAACACGAGAAGGCATATCCAGACCAATCAGCAGGATCACCACAAATGTCAGACTGAACGAGAGCGATGCCAGTGCAGTACCCAGATCCAGACGTTGAGCGATCAACGCGCCGATGATTGGGGCCAGTGCGCCACCCAATGCGCCAACGTTATAGGTAAAGCCCAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTCGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCACCGCCAATAGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAACAGACTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCGACGCAGCACCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCGACAGTATGAGGGTTATAAGCCAGATCGGTTTTCAGATACGTTGGCAGCAGCGCCTGAATCGGCCATGAGTAGAGGAAAGCAAACAACACGACCACCATCAGCATTACGCCAGTTGGCCAGCGTTTGCCCGTACTCTGCACCATAAAGCTGATAAAGATTGCGGTGCATAACAGCCCAAGAACAGCGACGATCGCGGCATTTTGCAGGTTACCGGCGAAGCAGAACCACAGCGCAGTAGCCGCCGCCAGTGTCATTACGATATTGGCAATGCGATGTTCACCACGGTAGAGAATATCCACCATTGTGCGTACTGGTGCTTTACCTGCGTGTTTCTCTTTCCAGTCTTCTGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATTGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCGGAACCACCAGGCTGTAGACCTGAGCGGCAACGACGGCCCCTACAGAGAAGCCTGAAATCAGAAAGCCACTGGCTTTGTTACGCAGATGTTTTGGCCAGCTTTCAATGACATAGGTGGCGCTGGAACCGTATTCACCCGCCATCCCCATGCCGATGACCAGACGAGCGATAAACATGGTGATGTAGCCTGGCGCAAAGCCGCATGCCAGCGTCCCGGCCGAGAAGAGAACGATGCTGGTGACCATTGCCAGACGACGCCCGTAGCGGTCACCCATAGCGCCGAGCATCAGGCCGCCGAACCAGCGAGAGATAAAGGCTGCGGAGATCAGACTTGCCGCCTGCACCGTCGTCAGCCCGAATTCACCTTGTACTTCGGTGAGTACCAGGGCGATTAAAACGAAATCAAAACCGTCAAGCAGATATCCCAACCAGGCAGCGGAAAATGCCCGCCATTGTGCACGATTGAGATGGCGATACCACGGGATATTCTGGGTTGTAGTACTCAT > 567 b4111 low-affinity_transport_system;_proline_permease_II proline/glycine_betaine_transporter NP_418535.1 11 MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKYWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVVGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHYDNIEQKIDDIDHEIADLQAKRTRLVQQHPRIDE gamma_subgroup Escherichia_coli_str._K-12_substr._MG1655 Escherichia_coli_str._K-12_substr._MG1655 NC_000913 4328525..4330027 Riley,M.,_Abe,T.,_Arnaud,M.B.,_Berlyn,M.K.,_Blattner,F.R.,_Chaudhuri,R.R.,_Glasner,J.D.,_Horiuchi,T.,_Keseler,I.M.,_Kosuge,T.,_Mori,H.,_Perna,N.T.,_Plunkett,G._III,_Rudd,K.E.,_Serres,M.H.,_Thomas,G.H.,_Thomson,N.R.,_Wishart,D._and_Wanner,B.L. NA 0:1503 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_U00096.On_Jun_24,_2004_this_sequence_version_replaced_gi:16127994.Current_U00096_annotation_updates_are_derived_from_EcoGenehttp://ecogene.org._Suggestions_for_updates_can_be_sent_to_Dr.Kenneth_Rudd_(krudd@miami.edu)._These_updates_are_being_generatedfrom_a_collaboration_that_also_includes_ASAP/ERIC,_the_Coli_GeneticStock_Center,_EcoliHub,_EcoCyc,_RegulonDB_and_UniProtKB/Swiss-Prot.COMPLETENESS:_full_length. NA 11-JAN-2012 Escherichia_coli_str._K-12_substr._MG1655_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_PROP_ECOLI.gb Escherichia_Castellani_and_Chalmers_1919 49175990 Nucleic_Acids_Res._34_(1),_1-9_(2006) NA NC_000913 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 16397293 1503 NA genomic_DNA NA K-12 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 511145 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Escherichia_coli_K-12:_a_cooperatively_developed_annotation_snapshot--2005 NA NC_000913.2 ATGCTGAAAAGGAAAAAAGTAAAACCGATTACCCTTCGTGATGTCACCATTATTGATGACGGTAAACTGCGTAAAGCCATTACCGCAGCATCACTGGGTAATGCAATGGAATGGTTCGATTTTGGTGTTTATGGTTTTGTTGCTTACGCATTAGGTAAAGTTTTTTTCCCGGGGGCTGACCCCAGCGTGCAGATGGTTGCTGCACTTGCCACTTTCTCCGTTCCCTTTCTGATTCGACCGCTTGGCGGACTCTTCTTTGGTATGTTGGGCGATAAATATGGTCGCCAGAAGATCCTCGCTATCACTATTGTGATTATGTCGATCAGTACGTTCTGTATTGGCTTAATACCGTCCTACGACACGATTGGTATTTGGGCACCGATTCTGCTGTTGATCTGTAAGATGGCACAAGGTTTCTCGGTCGGCGGTGAATATACCGGGGCGTCGATATTTGTTGCGGAATACTCCCCTGACCGTAAACGTGGCTTTATGGGCAGCTGGCTGGACTTCGGTTCTATTGCCGGGTTTGTGCTGGGTGCGGGCGTGGTGGTGTTAATTTCGACCATTGTCGGCGAAGCGAACTTCCTCGATTGGGGCTGGCGTATTCCGTTCTTTATCGCTCTGCCGTTAGGGATTATCGGGCTTTACCTGCGCCATGCGCTGGAAGAGACTCCGGCGTTCCAGCAGCATGTCGATAAACTGGAACAGGGCGACCGTGAAGGTTTGCAGGATGGCCCGAAAGTCTCGTTTAAAGAGATTGCCACTAAATACTGGCGCAGCCTGTTGACATGTATTGGTCTGGTAATTGCCACCAACGTGACTTACTACATGTTGCTGACCTATATGCCGAGTTATTTGTCGCATAACCTGCATTACTCCGAAGACCACGGGGTGCTGATTATTATCGCCATTATGATCGGTATGCTGTTTGTCCAGCCGGTGATGGGCTTGCTGAGTGACCGTTTTGGCCGTCGTCCGTTTGTGCTACTTGGTAGTGTTGCCCTGTTTGTGTTGGCGATCCCGGCGTTTATTCTGATTAACAGTAACGTCATCGGCCTGATTTTTGCCGGGTTACTGATGCTGGCGGTGATCCTTAACTGCTTTACGGGCGTTATGGCTTCTACCTTGCCAGCGATGTTCCCGACGCATATCCGTTACAGCGCGCTGGCGGCGGCATTTAATATTTCGGTGCTGGTTGCCGGTCTGACGCCAACGCTGGCGGCCTGGCTGGTCGAAAGCTCGCAGAATCTGATGATGCCTGCCTATTACCTGATGGTAGTGGCGGTGGTTGGTTTAATCACCGGCGTAACCATGAAAGAGACGGCAAATCGTCCGTTGAAAGGTGCGACACCGGCGGCGTCAGATATACAGGAAGCGAAGGAAATTCTCGTCGAGCATTACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAA > 568 ECP_0045 NA metabolite_transport_protein_YaaU YP_667986.1 11 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG gamma_subgroup Escherichia_coli_536 Escherichia_coli_536 NC_008253 47352..48683 Hochhut,B.,_Wilde,C.,_Balling,G.,_Middendorf,B.,_Dobrindt,U.,_Brzuszkiewicz,E.,_Gottschalk,G.,_Carniel,E._and_Hacker,J. NA 0:1332 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000247.COMPLETENESS:_full_length. NA 26-JAN-2012 Escherichia_coli_536,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_Q0TLU4_ECOL5.gb Escherichia_Castellani_and_Chalmers_1919 110640213 Mol._Microbiol._61_(3),_584-595_(2006) NA NC_008253 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 16879640 1332 NA genomic_DNA NA 536 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 362663 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Role_of_pathogenicity_island-associated_integrases_in_the_genome_plasticity_of_uropathogenic_Escherichia_coli_strain_536 NA NC_008253.1 ATGCAACCGTCCAGAAACTTTGATGATCTTAAATTCTCCTCTATTCACCGCCGCATTTTGCTGTGGGGAAGCGGTGGTCCGTTTCTGGATGGTTATGTACTGGTAATGATTGGCGTGGCGCTGGAGCAACTGACTCCGGCGCTGAAACTGGACGCTGACTGGATTGGCTTGCTGGGCGCGGGAACGCTCGCCGGGCTGTTCGTTGGCACATCGCTGTTTGGCTATATCTCCGATAAAGTCGGACGGCGCAAAATGTTCCTCATCGATATCATCGCCATCGGCGTGATATCGGTGGCGACGATGTTTGTCTCATCCCCCGTCGAACTGTTAGTGATGCGGGTACTCATCGGCATTGTCATCGGTGCAGATTATCCCATCGCCACTTCGATGATCACTGAGTTCTCCAGTACCCGTCAGCGGGCGTTTTCCATCAGCTTTATTGCCGCGATGTGGTATGTCGGCGCGACCTGCGCCGATCTGGTCGGTTACTGGCTTTATGATGTGGAAGGTGGTTGGCGCTGGATGCTGGGTAGCGCAGCGATCCCCTGTTTGTTGATTTTGATTGGTCGATTCGAACTGCCTGAATCTCCCCGCTGGTTGTTACGCAAAGGGCGAGTAAAAGAGTGCGAAGAGATGATGATCAAACTGTTTGGCGAACCGGTGGCTTTCGATGAAGAGCAGCCGCAGCAAACCCGTTTTCGCGATCTGTTTAATCGCCGCCATTTTCCTTTTGTTCTGTTTGTTGCCGCCATCTGGACCTGCCAGGTGATCCCAATGTTCGCCATTTACACCTTTGGCCCGCAAATCGTTGGTTTGTTGGGATTGGGGGTTGGCAAAAACGCGGCGCTGGGGAACGTGGTGATTAGCCTGTTCTTTATGCTCGGCTGTATTCCGCCGATGCTGTGGCTAAACACTGCCGGACGGCGTCCATTGTTGATTGGCAGCTTTGCCATGATGACGCTGGCGCTGGCGGTTTTGGGGCTGATCCCGGATATGGGGATCTGGCTGGTGGTAATGGCGTTTGCGGTGTATGCCTTTTTCTCCGGTGGGCCGGGTAATTTGCAGTGGCTTTATCCTAATGAACTCTTCCCGACGGATATCCGCGCCTCTGCCGTGGGCGTGATTATGTCCTTAAGCCGTATTGGCACTATTGTATCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTATTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAGACCAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAA > 569 UTI89_C3654 NA sialic_acid_transporter YP_542629.1 11 MGIAHRGRLTMSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLACGFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHGGKAPVRTMVDILYRGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNDLVKTKS gamma_subgroup Escherichia_coli_UTI89 Escherichia_coli_UTI89 NC_007946 3582432..3583952 Chen,S.L.,_Hung,C.S.,_Xu,J.,_Reigstad,C.S.,_Magrini,V.,_Sabo,A.,_Blasiar,D.,_Bieri,T.,_Meyer,R.R.,_Ozersky,P.,_Armstrong,J.R.,_Fulton,R.S.,_Latreille,J.P.,_Spieth,J.,_Hooton,T.M.,_Mardis,E.R.,_Hultgren,S.J._and_Gordon,J.I. NA 0:1521 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000243.Bacteria_is_available_by_contacting_Scott_Hultgren(hultgren@borcim.wustl.edu).COMPLETENESS:_full_length. NA 25-JAN-2012 Escherichia_coli_UTI89_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_Q1R6B6_ECOUT.gb Escherichia_Castellani_and_Chalmers_1919 91209055 Proc._Natl._Acad._Sci._U.S.A._103_(15),_5977-5982_(2006) NA NC_007946 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 16585510 1521 NA genomic_DNA NA UTI89 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 364106 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Identification_of_genes_subject_to_positive_selection_in_uropathogenic_strains_of_Escherichia_coli:_a_comparative_genomics_approach NA NC_007946.1 TTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAACGGCACGGCACCGCTAAATGGTTTGCCGTCGATAGCGTCATGAGTACGCAATGCTTCCGGGCGCAGCCAACGCTGAACACGAGAAGGCATATCCAGACCAATCAGCAGGATCACCACAAATGTCAGACTGAACGAGAGCGATGCCAGCGCAGTACCCAGATCCAGACGTTGAGCGATCAACGCGCCGAGGATTGGGGCCAGTGCACCGCCCAATGCGCCAACGTTGTAGGTAAAGCCCAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTCGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCAATCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGACTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCCCCGACGCAGCACCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCGACAGTATGCGGGTCATAAGCCAGATCGGTTTTCAGATACGTTGGCAGCAGCGCCTGAATCGGCCATGAGTAGAGGAAAGCGAACAACACGACCACCATCAGCATTACGCCCGTTGGCCAGCGTTTGCCCGTACTCTGCACCATAAAGCTGATAAAAATTGCGGCGCATAACAGCCCAAGAACAGCGACGATCGCGGCATTTTGCAGGTTACCGGCGAAGCAGAACCACAGCGCAGTAGCCGCCGCCAGTGTCATTACGATATTGGCAATGCGATGTTCACCACGGTAGAGAATGTCTACCATCGTGCGTACTGGTGCTTTACCCCCGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATTGGCAAAATGCCGATAAAGAACAGCGCACGCCAGCCCCAGACCGGAACCACCAGACTATAGACCTGAGCGGCAACGACGGCCCCCACTGAGAAGCCTGAAATCAGAAAACCACTGGCTTTGTTACGCAGATGCTTTGGCCAGCTTTCAATGACATAGGTGGCGCTGGAACCGTATTCACCCGCCATCCCCATGCCGATGACCAGACGAGCGATAAACATGGTGATGTAGCCTGGCGCAAAGCCGCAGGCCAGCGTCCCGGCCGAGAAGAGAACGATGCTGGTGACCATTGCCAGACGACGCCCGTAGCGGTCACCCATAGCGCCGAGCATCAGGCCGCCGAACCAGCGAGAGATAAAGGCTGCGGAGATCAGACTTGCCGCCTGCACCGTCGTCAGCCCGAATTCACCCTGTACTTCGGTGAGTACCAGGGCGATTAAAACGAAATCAAAACCGTCAAGCAGATATCCCAACCAGGCAGCGGAAAATGCCCGCCATTGTGCGCGGTTAAGATGGCGATACCACGGGATATTCTGGGTTGTAGTACTCATTGTGAGTCTCCCGCGGTGGGCGATGCCCAC > 570 eco2033 NA putative_transport_protein,_shikimate CAJ87599.1 11 MDSTLISTRPDEGTLSLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVWMMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLGALWVRNGMEESAEFEQQQHNQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALITYFAGNWHSVAIYLLAGCLISAMTALLMKDNQRA gamma_subgroup Escherichia_coli Escherichia_coli AM236324 50586..51902 Hejnova,J.,_Pages,D.,_Rusniok,C.,_Glaser,P.,_Sebo,P._and_Buchrieser,C. NA 0:1317 NA NA 02-JUL-2007 Escherichia_coli_genome_fragment_containing_the_yersiniabactin,_cob_and_pdu_gene_clusters,_strain_A0_34/86. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_Q1RPH9_ECOLX.gb Escherichia_Castellani_and_Chalmers_1919 92110298 Int._J._Med._Microbiol._296_(8),_541-546_(2006) NA AM236324 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 17049458 1317 NA genomic_DNA NA A0_34/86 NA bacterium_E3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 562 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Specific_regions_of_genome_plasticity_and_genetic_diversity_of_the_commensal_Escherichia_coli_A0_34/86 NA AM236324.1 ATGGACTCCACGCTCATCTCCACTCGTCCCGATGAAGGGACGCTTTCGTTAAGTCGCGCCCGACGAGCTGCGTTAGGCAGTTTCGCTGGTGCCGTCGTCGACTGGTATGATTTTTTACTCTATGGCATTACCGCCGCACTGGTGTTTAATCGCGAGTTTTTCCCGCAAGTAAGCCCGGCGATGGGAACGCTCGCCGCATTTGCCACCTTTGGTGTCGGCTTCCTTTTCCGACCGCTCGGCGGTGTCATTTTCGGTCACTTTGGTGACCGGCTGGGACGTAAGCGCATGTTAATGCTGACCGTCTGGATGATGGGCATCGCGACAGCCTTGATTGGTATTCTTCCTTCATTCTCGACCATTGGGTGGTGGGCACCTATTTTGCTGGTGACACTGCGTGCCATTCAGGGATTTGCCGTCGGCGGCGAATGGGGAGGCGCAGCGTTGCTTTCCGTTGAAAGTGCGCCGAAAAATAAAAAAGCCTTTTACAGTAGCGGTGTACAAGTTGGCTACGGAGTAGGTTTACTGCTTTCAACCGGACTGGTTTCATTGATCAGTATGATGACGACTGACGAACAGTTTTTAAGCTGGGGCTGGCGCATTCCTTTCCTGTTTAGCATCGTACTGGTACTGGGGGCATTGTGGGTGCGTAATGGCATGGAGGAGTCCGCGGAATTTGAACAACAGCAACATAATCAAGCGGCCGCGAAAAAACGCATCCCGGTTATCGAAGCTCTGTTACGACATCCCGGTGCTTTCCTGAAGATTATTGCACTACGACTGTGCGAGTTGCTGACGATGTACATTGTTACTGCCTTTGCACTTAATTATTCAACCCAGAATATGGGGTTACCGCGCGAACTTTTCCTTAATATTGGTTTGCTGGTAGGTGGATTAAGCTGCCTGACAATTCCCTGTTTTGCCTGGCTTGCCGATCGTTTTGGTCGGCGCAGGGTTTATATCACAGGCGCGTTGATCGGAACGTTGAGCGCATTTCCTTTCTTTATGGCGCTTGAAGCACAATCTATTTTCTGGATAGTTTTCTTCTCCATAATGCTGGCAAACATTGCGCATGACATGGTGGTGTGTGTGCAACAACCGATGTTTACCGAAATGTTTGGTGCCAGTTATCGCTACAGTGGTGCTGGCGTCGGTTATCAGGTTGCCAGTGTGGTTGGCGGTGGATTTACACCTTTTATTGCCGCTGCACTCATCACTTACTTTGCCGGGAACTGGCATAGCGTCGCTATTTATTTGCTGGCTGGATGCCTGATTTCCGCAATGACCGCTTTGTTGATGAAAGACAATCAACGCGCTTGA > 571 ECs5014 xylose/proton_symporter;_member_of_the_major_facilitator_superfamily_(MFS)_of_transporter D-xylose_transporter_XylE NP_313041.1 11 MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQTATL gamma_subgroup Escherichia_coli_O157:H7_str._Sakai Escherichia_coli_O157:H7_str._Sakai NC_002695 5094053..5095528 Bergholz,T.M.,_Wick,L.M.,_Qi,W.,_Riordan,J.T.,_Ouellette,L.M._and_Whittam,T.S. NA 0:1476 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_BA000007.COMPLETENESS:_full_length. NA 25-JAN-2012 Escherichia_coli_O157:H7_str._Sakai_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_XYLE_ECO57.gb Escherichia_Castellani_and_Chalmers_1919 15829254 BMC_Microbiol._7,_97_(2007) NA NC_002695 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 17967175 1476 NA genomic_DNA NA Sakai NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 386585 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Global_transcriptional_response_of_Escherichia_coli_O157:H7_to_growth_transitions_in_glucose_minimal_medium NA NC_002695.1 TTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGGGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCCACATAAACAGTGCTGCCAGAACGCCCATACAACCGTAAATCCAGTAGGAGAAACCGTTGTGGAAATGGGCCACCAGCCAGGAGTTTTTGTCCATCATCGGGAAGGTCCAGGAGACGAAGTAGTTCGCCAGCCACTGGGCCGCCACCGCGATTGCCAGCGCTTTACCTCGAATAGCATTCGGGAAGATTTCCGACAGCAGTACCCAGCATACCGGACCCCAGGACATGGCAAAGGCGGCAACATAGAACAGCATCGACAGTAGCGCCACAATACCCGGTGCCTGAGTGTAAAACGCGGTACCGAGGCTAAACATACCGATTGCCATTCCGAGTGCGCCGATAATTTGCAGTGGCTTACGACCAAATTTATCCACCGTCATAATTGCCAGAACGGTGAAGGTGAGGTTGATAACTCCGACAATAATGGTCTGCAACAGCGCGATATCCGTGCTGGCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATAACGCCGATGACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGTTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGTGACATCAGCCAGCGAGGACTTTCTGGCACGGTATACAGCAGCATTAAGAACAGCAGTGCAGGGATACATTCCGAGGCAAACATATAACGCCAGCCGTCAGTATTCAGCCAGCTGGCATCACCGGAACGCGCAATAAAATAGTTTACGCAGTAAACTAAAAGCTGCCCGAAAATAATCGCAAACTGGTTAAATGAAACCAGTTTCCCGCGAATATGAGCAGGAGCAAGTTCCGCAATATACATTGGTGAAAGCATTGAGGCTAAACCAACGCCAATACCGCCAATAATACGATAAATAACAAATTCCGGGACATAACCTGCCAGATAAACAGGCACTGTGTTGTCCGGGTTTATAGAGGTAAAACCAAGTTCTGGCCAGGCAGAACCTACACCAGAAATAAAAAACAGGACAGCAGCAATCTTAAGTGAATCACGACGACCGAAGCGGTTACTGCAATAACCACCGAGGGCACCGCCGATGATGCAACCAATCAGAGCGCTGGCCACGCAAAACCCTAACAGGGAGTTGGCAGCGGATTCACTTAAGTTTTGTGGAGCAACAAAGACGGTATTGAGTGACTCAACAGTACCGGAAATAACGGCGGTGTCGTAGCCAAATAATAAACCACCTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCAT > 572 b2771 putative_transport_protein predicted_transporter NP_417251.2 11 MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV gamma_subgroup Escherichia_coli_str._K-12_substr._MG1655 Escherichia_coli_str._K-12_substr._MG1655 NC_000913 2894555..2895892 Riley,M.,_Abe,T.,_Arnaud,M.B.,_Berlyn,M.K.,_Blattner,F.R.,_Chaudhuri,R.R.,_Glasner,J.D.,_Horiuchi,T.,_Keseler,I.M.,_Kosuge,T.,_Mori,H.,_Perna,N.T.,_Plunkett,G._III,_Rudd,K.E.,_Serres,M.H.,_Thomas,G.H.,_Thomson,N.R.,_Wishart,D._and_Wanner,B.L. NA 0:1338 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_U00096.On_Jun_24,_2004_this_sequence_version_replaced_gi:16127994.Current_U00096_annotation_updates_are_derived_from_EcoGenehttp://ecogene.org._Suggestions_for_updates_can_be_sent_to_Dr.Kenneth_Rudd_(krudd@miami.edu)._These_updates_are_being_generatedfrom_a_collaboration_that_also_includes_ASAP/ERIC,_the_Coli_GeneticStock_Center,_EcoliHub,_EcoCyc,_RegulonDB_and_UniProtKB/Swiss-Prot.COMPLETENESS:_full_length. NA 11-JAN-2012 Escherichia_coli_str._K-12_substr._MG1655_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_coli_YGCS_ECOLI.gb Escherichia_Castellani_and_Chalmers_1919 49175990 Nucleic_Acids_Res._34_(1),_1-9_(2006) NA NC_000913 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 16397293 1338 NA genomic_DNA NA K-12 NA bacterium_E3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 511145 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia Escherichia_coli_K-12:_a_cooperatively_developed_annotation_snapshot--2005 NA NC_000913.2 TTAAACGCTAACAGAATGTTCATTCGCACCTCCTACATTTCCCGCCGCCACCAGCGGGAGGGCTTTAGTTTCTGGTGCCCATAGCCAGGTCACAACAAAACCAACCAACAACACTGTCGCCAGGAGCAATAAGGTGACTTGCATTCCCCACTGCGCCAGCACCCACGGCAGCAGGCCAGTACTTACCGCCGCGCCAAGTCGACTCATGGCAGTGGCAAAACCGACGCCCAGCGAGCGAATGTCAGTAGGAAAACTTTCCGCAGGCAAAATGCCCACCAGATTACTGACTGCCGAAATGGTGGTGCTGAAGAGAACAAAAAGCAGCAGCGTTAATGAACTGCCGGAAGGCAAACAGGCCATGACTACCAGCGTTGCCGCCAGCAGCAAAAAACTTCCCAGCAAAAATTTGCGATGTGCCAGCAGGTGCGTCAGAACTAATCCCAGCAGCGCGCCCACAATTAACAACGCATTAAGCATCAGGCTGGCAGTCAGCGCATCTTCCAGACCAATAGTCTGGGCGATAGTTGGCAGCCAGGTATAAATCACAAACCATGGGATTACGAGGCAGACAAAGAAGACGCTGTTAAACGCCGTGCGCCGCCAGTAACGCGAAGAGAACAAGGTTTTGATGTGTTTATGGGTCGCCGTTACCACTTCATCGCCCAGTAAAACATGGGGACCAAAATAGCGATGCACGATAGCGTGAGCTTCTGCAAAACGCCCCTGGCGCAGTAGCCAGCGTGGTGATTCTGGCGTTCCCCAGCGTAATAACGTAATCAACAACGCGGGCAGAGCTGCCGATGCCAGTAGCCAGCGCCAGGCCTCCGGGTTTTCGGAAATAAAGTGATGTCCGGCAATACTTGCCAGCACATAGCCTACGGTCCACACCACGCTGAATGCGCCCAGCAAAATACCGCGATGGCGGCGCGGGGAAAATTCAGCCAGCAAGGTGTGACCTACTGAATAATCGCCTCCCAGACCAATGCCAATCAAAATGCGCAGTCCAATAAGATGCTCTGGCGTGGTGGCAAAAAATTGTAAAAACGAAGCAAGCGTAATCAGCAAAAAGCTGAAGGTGAAGATTTTTTGCCGACCAATATGGTCGGAGATCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCAT > 573 ESCG_00790 NA D-xylose-proton_symporter EEH72132.1 11 MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQTATL gamma_subgroup Escherichia_sp._1_1_43 Escherichia_sp._1_1_43 GG665811 27613..29088 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Allen-Vercoe,E.,_Strauss,J.,_Ambrose,C.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1476 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_31.64xSequencing_Technology:_454. NA 15-APR-2009 Escherichia_sp._1_1_43_genomic_scaffold_supercont1.1,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_sp_C1NAQ3_9ESCH.gb Escherichia_Castellani_and_Chalmers_1919 226840109 Unpublished NA GG665811 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1476 NA genomic_DNA NA 1_1_43 NA Escherichia_sp._1_1_43 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 457400 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_Genome_Sequence_of_Escherichia_sp._strain_1_1_43 NA GG665811.1 TTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCCACATAAACAGTGCTGCCAGAACGCCCATACAACCGTAAATCCAGTAGGAGAAACCGTTGTGGAAATGGGCCACCAGCCAGGAGTTTTTGTCCATCATCGGGAAGGTCCAGGAGACGAAGTAGTTCGCCAGCCACTGGGCCGCCACCGCGATTGCCAGCGCTTTACCACGAATAGCATTCGGGAAGATTTCCGACAGCAGTACCCAGCATACCGGACCCCAGGACATGGCAAAGGCGGCAACATAGAACAGCATCGACAGTAGCGCCACAATACCCGGTGCCTGAGTGTAAAACGCGGTACCGAGGCTAAACATACCGATTGCCATTCCGAGTGCGCCGATAATTTGCAGTGGCTTACGACCAAATTTATCCACCGTCATAATTGCCAGAACGGTGAAGGTGAGGTTGATAACTCCGACAATAATGGTCTGCAACAGCGCGATATCCGTGCTGGCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGTTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCGAGGACTTTCTGGCACGGTATACAGCAGCATTAAGAACAGCAGTGCAGGGATACATTCCGAGGCAAACATATAACGCCAGCCGTCAGTATTCAGCCAGCTGGCATCACCGGAACGGGCAATAAAATAGTTTACGCAGTAAACTAAAAGTTGCCCGAAAATAATCGCAAACTGGTTAAAAGAGACCAGTTTCCCGCGAATATGAGCTGGAGCCAGTTCCGCAATATACATTGGCGAGAGCATTGAGGCTAAACCAACGCCAATACCGCCAATAATGCGATAAATAACAAATTCTGGGACATAACCTGCCAGATAAACAGGCACAGTGTTGTCCGGGTTTATAGAGGTAAAACCAAGTTCTGGCCAGGCAGAACCTACACCAGAAATAAAAAACAGGACAGCAGCAATCTTAAGTGAATCACGACGACCGAAGCGGTTACTGCAATAACCACCGAGGGCACCGCCGATGATGCAACCAATCAGAGCGCTGGCCACGCAAAACCCTAACAGGGAGTTGGCAGCGGATTCACTTAAGTTTTGTGGAGCAACAAAGACGGTATTGAGTGACTCAACAGTACCGGAAATAACGGCGGTGTCGTAGCCAAATAATAAACCACCTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCAT > 574 ESCG_00324 NA galactose-proton_symporter EEH71637.1 11 MEGIMPDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTSAEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERNLMKGRKLREIGAHD gamma_subgroup Escherichia_sp._1_1_43 Escherichia_sp._1_1_43 GG665830 331264..332670 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Allen-Vercoe,E.,_Strauss,J.,_Ambrose,C.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1407 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_31.64xSequencing_Technology:_454. NA 15-APR-2009 Escherichia_sp._1_1_43_genomic_scaffold_supercont1.20,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_sp_C1NDF2_9ESCH.gb Escherichia_Castellani_and_Chalmers_1919 226839292 Unpublished NA GG665830 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1407 NA genomic_DNA NA 1_1_43 NA Escherichia_sp._1_1_43 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 457400 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_Genome_Sequence_of_Escherichia_sp._strain_1_1_43 NA GG665830.1 TTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTTTGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGTCGGTGCGGTGGGCAGCGGCTGGCTCTCCTTTAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTTCGCTGTTCTCTGCGGCTGCGCCAAACGTTGAAGTACTGATTCTTTCCCGCGTTCTGCTGGGGCTGGCGGTGGGTGTGGCCTCTTATACCGCACCACTGTACCTCTCTGAAATTGCGCCGGAAAAAATTCGCGGCAGTATGATCTCTATGTATCAGTTGATGATCACTATCGGGATCCTCGGTGCTTATCTTTCTGATACCGCCTTCAGCTACACCGGTGCATGGCGCTGGATGCTGGGTGTGATTATCATCCCGGCAATTTTGCTGCTGATTGGTGTCTTCTTCCTGCCAGACAGCCCACGTTGGTTTGCCGCCAAACGCCGTTTTGTTGATGCCGAACGCGTGCTGCTACGCCTGCGTGACACCAGCGCGGAAGCGAAACGCGAACTGGATGAAATCCGTGAAAGTTTGCAGGTTAAACAGAGTGGCTGGGCGCTGTTTAAAGAGAATAGCAACTTCCGCCGCGCGGTGTTCCTTGGCGTACTGTTACAGGTAATGCAGCAATTCACCGGGATGAACGTCATCATGTATTACGCGCCGAAAATCTTCGAACTGGCGGGTTATACCAACACCACCGAGCAAATGTGGGGGACAGTGATTGTCGGCCTGACCAACGTACTTGCCACCTTTATCGCAATCGGCCTTGTTGACCGCTGGGGACGTAAACCAACGCTAACGCTGGGCTTCCTGGTGATGGCTGCTGGTATGGGCGTACTCGGTACAATGATGCATATCGGTATCCACTCTCCGTCGGCGCAGTATTTCGCCATCGCCATGCTGCTGATGTTTATTGTCGGTTTTGCCATGAGTGCCGGTCCGCTGATTTGGGTACTGTGCTCCGAAATTCAGCCGCTGAAAGGCCGCGATTTTGGCATCACCTGCTCCACCGCCACCAACTGGATTGCCAACATGATCGTTGGCGCAACGTTCCTGACCATGCTCAACACGCTGGGTAACGCCAACACCTTCTGGGTGTACGCGGCTCTGAACGTACTGTTTATCCTGCTGACATTGTGGCTGGTACCGGAAACCAAACACGTTTCGCTGGAACATATTGAACGTAATCTGATGAAAGGTCGTAAACTGCGCGAAATCGGCGCTCACGATTAA > 575 ESCG_01647 NA metabolite/H+_symporter EEH71230.1 11 MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATAAVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLLTMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRALYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVSLHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFSTAAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIILFALFAFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVASILGASVAPYIAAWLQTNYGLGAVGLYLAAMAGLTLIALLLTHETRHQSL gamma_subgroup Escherichia_sp._1_1_43 Escherichia_sp._1_1_43 GG665832 243595..244917 Ward,D.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Allen-Vercoe,E.,_Strauss,J.,_Ambrose,C.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1323 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_31.64xSequencing_Technology:_454. NA 15-APR-2009 Escherichia_sp._1_1_43_genomic_scaffold_supercont1.22,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Escherichia_sp_C1NFF7_9ESCH.gb Escherichia_Castellani_and_Chalmers_1919 226838946 Unpublished NA GG665832 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1323 NA genomic_DNA NA 1_1_43 NA Escherichia_sp._1_1_43 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 457400 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Escherichia The_Genome_Sequence_of_Escherichia_sp._strain_1_1_43 NA GG665832.1 ATGCAAGCAACAGCCACAACACTCGACCACGAGCAAGAATACACGCCGATCAACTCGCGTAATAAAGTCCTTGTCGCCTCTCTCATTGGCACAGCCATTGAGTTCTTCGACTTTTACATTTACGCCACTGCGGCCGTTATTGTGTTTCCGCATATCTTCTTCCCGCAGGGCGATCCTACGGCAGCAACGCTACAGTCGCTCGCCACCTTCGCCATCGCCTTCGTCGCGCGCCCCATTGGCTCTGCCGTTTTTGGTCATTTTGGCGATCGCGTTGGGCGTAAAGCGACGCTGGTCGCCTCGTTGCTAACGATGGGGATTTCGACCGTGGTGATTGGTCTGCTGCCGGGCTATGCCACGATTGGTATTTTCGCCCCGCTGCTGCTGGCGCTGGCTCGATTTGGTCAGGGTCTGGGCTTAGGCGGTGAATGGGGCGGCGCGGCGCTGCTGGCGACTGAAAACGCCCCACCGCGCAAACGTGCACTGTATGGCTCCTTTCCGCAGCTGGGCGCACCGATTGGCTTCTTCTTTGCCAATGGCACTTTCTTGCTGCTTTCCTGGCTACTGACCGACGAGCAGTTTATGAGCTGGGGCTGGCGTGTGCCATTTATCTTCTCGGCGGTGCTGGTCATTATCGGCCTGTATGTTCGCGTGTCGCTGCATGAGTCGCCGGTGTTTGAGAAAGTCGCTAAAGCGAAAAAACAGGTGAAGATCCCGCTGGGTACGCTGCTGACCAAACATGTTCGCGTAACCGTACTGGGTACGTTCATTATGCTGGCAACCTATACGCTGTTTTACATCATGACGGTCTACTCTATGACCTTTAGTACCGCCGCCGCGCCAGTTGGGCTTGGCCTGCCGCGTAACGAAGTGTTGTGGATGTTGATGATGGCAGTTATTGGTTTTGGCGTGATGGTGCCAGTCGCTGGATTACTGGCTGATGCCTTTGGTCGCCGTAAAAGCATGGTAATCATCACCACGCTGATCATCCTGTTCGCGCTGTTCGCCTTTAACCCACTGCTCGGTTCTGGCAACCCGATTCTGGTTTTTGCCTTCCTGCTGCTGGGGTTAAGTCTGATGGGTCTGACCTTCGGGCCAATGGGTGCGCTGTTACCAGAGCTGTTTCCGACAGAAGTGCGTTACACCGGAGCATCGTTCTCTTACAACGTAGCGTCGATTCTCGGGGCTTCCGTTGCGCCATATATCGCAGCCTGGTTGCAGACTAACTACGGGCTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAA > 576 FSU_2305 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 sugar_transporter_family_protein ADL27328.1 11 MAVEDNYKVGHVIMITLSAAIGGFLFGFDSSVINGANVALKGYFNCNDMQLGLAVSLALIGAAIGAYFAGRLADKFGRVRCMLAAAVLFFISAIGSGLPFTIYDFIAWRVIGGVGIGVASIIAPIYIAETSPAHLRGRLGSMQQFAIVIGIFVALLSNYIIVRISGSASNLIMGIESWKVMFWVEAIPAFLYGVAAWQLPESPRFLVSKGRMEEAQKVLSMIASVGIKEKAQEIEDSFKTHKPAKLSDLLETVAGKKRVAPIVWAGLSIAILQQLVGINMIFYYGSMLWQSVGFGESDAFLTSVISSAINLTMTIAAILLIDKIGRKPLLLIGSAGMTVTLGILACCFLFGSDASGNLTGNSGIFALLAANFYVAFFAATWGPVMWVMLGEMFNNRIRAVAIAICGLAQWGANFLVSWSFPVLVGKDGIGIGPTYLIYTTFAAISFVLVAKLVNETKGKKLEAM Fibrobacteria Fibrobacter_succinogenes_subsp._succinogenes_S85 Fibrobacter_succinogenes_subsp._succinogenes_S85 CP002158 2675852..2677246 Durkin,A.S.,_Nelson,K.E.,_Morrison,M.,_Forsberg,C.W.,_Wilson,D.B.,_Russell,J.B.,_Cann,I.K.O.,_Mackie,R.I._and_White,B.A. NA 0:1395 The_source_of_DNA_was_Professor_Cecil_Forsberg,_University_ofGuelph_(cforsber@uoguelph.ca). NA 21-NOV-2011 Fibrobacter_succinogenes_subsp._succinogenes_S85,_complete_genome. NA Fibrobacteraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Fibrobacter_succinogenes_D9S468_FIBSS.gb Fibrobacter_Montgomery_et_al._1988 302325342 Submitted_(04-AUG-2010)_The_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA CP002158 NA NA Fibrobacterales Fibrobacteres_Garrity_and_Holt_2001 NA 1395 NA genomic_DNA NA S85 NA Ruminobacter_succinogenes NA complement NA NA NA NA NA NA Fibrobacter_succinogenes_succinogenes NA NA NA prokaryotes Fibrobacteres/Acidobacteria_group 59374 Bacteria,_Fibrobacteres,_Fibrobacterales,_Fibrobacteraceae,_Fibrobacter Direct_Submission NA CP002158.1 TTACATGGCTTCGAGCTTCTTGCCCTTGGTTTCGTTCACCAGCTTGGCGACTAACACAAAGCTTATTGCTGCGAAGGTCGTGTAAATCAAGTAGGTCGGGCCGATGCCGATGCCGTCCTTGCCGACGAGAACCGGGAAAGACCAGCTGACCAAGAAGTTTGCACCCCACTGGGCAAGGCCGCATATTGCGATTGCCACGGCACGAATGCGGTTGTTGAACATTTCGCCAAGCATCACCCACATCACCGGGCCCCATGTTGCGGCAAAGAATGCCACGTAGAAGTTTGCAGCGAGGAGGGCGAAAATACCGCTATTGCCTGTGAGGTTACCGCTAGCGTCGGAACCGAAGAGGAAGCAGCACGCGAGAATGCCAAGCGTAACGGTCATGCCTGCAGAACCGATGAGCAAGAGCGGCTTACGACCAATCTTATCGATAAGGAGAATAGCAGCGATAGTCATGGTCAAGTTGATAGCACTGGAAATCACGCTCGTAAGGAATGCATCGCTTTCACCGAAACCGACACTCTGCCAAAGCATGGAACCATAGTAGAAGATCATGTTAATACCCACGAGCTGCTGGAGAATGGCGATACTGAGGCCAGCCCAGACAATCGGAGCGACGCGCTTTTTGCCAGCGACCGTTTCGAGGAGGTCAGAAAGCTTGGCCGGCTTGTGAGTCTTGAAGGAGTCTTCAATTTCCTGAGCCTTTTCCTTGATGCCGACGGATGCAATCATCGAAAGCACTTTCTGAGCTTCTTCCATGCGGCCCTTGCTCACGAGGAAACGCGGGGATTCCGGGAGCTGCCAGGCGGCGACACCGTAGAGGAAAGCCGGGATAGCTTCGACCCAGAACATCACCTTCCAGGATTCAATGCCCATAATCAAGTTGCTTGCGGAACCCGAAATGCGGACAATGATGTAGTTCGAAAGCAGCGCCACGAAGATACCGATAACGATGGCGAACTGCTGCATGGAGCCTAGACGCCCACGCAAATGCGCCGGGGAGGTTTCGGCAATGTAAATCGGGGCGATGATAGATGCTACACCGATACCCACACCGCCAATCACGCGCCAAGCAATGAAATCGTAGATGGTGAAGGGGAGGCCAGAACCGATTGCGCTGATAAAGAAAAGGACGGCGGCTGCAAGCATGCAACGCACACGTCCAAACTTATCTGCCAAGCGACCGGCGAAATATGCACCGATGGCAGCGCCAATCAATGCGAGAGAAACCGCAAGACCAAGCTGCATGTCGTTACAATTGAAGTAACCTTTAAGTGCAACGTTGGCGCCGTTAATCACGGACGAGTCAAAACCGAATAGGAACCCTCCGATGGCGGCGGAAAGGGTTATCATGATGACATGTCCAACTTTGTAATTGTCTTCTACTGCCAT > 577 Fjoh_4973 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_001197291.1 11 METNPKKKNSLKHVLFGSLIGTTIEFFDFYIYANAAVLVFPQLFFPGSDSTMATLESLATFSIAFLSRPLGSAFFGHYGDKIGRKFTLVAALLTMGISTVTIGFLPSYASIGVAAPLLLMLCRFGQGVGLGGEWGGAVLLAIENAPPHKRAWYGMFPQLGAPIGLLLSGGTFLLLTDSMSNEDFMDYGWRIPFIASALLVIVGFYIRTKITETPSFENAKKHEEEVKVPFLELVKSYKNQLIFGTFAAITTFLVFYLMTVFTLSWATSDLGIVKRDGLLIQLFSVLFFAIFIPVSAVVADKIGRRKMLILATAAIAVFGFFFSFFLSTGNIALVTTFACIGMALMGFTYGPLGTFLSELFPTNVRYSGASLTFNMAGILGAAFAPMIAIWLAKKYDVSYVGFYLVTAALISLISFLVISKDEHKF not_Flavobacteria_Cavalier-Smith_2002 Flavobacterium_johnsoniae_UW101 Flavobacterium_johnsoniae_UW101 NC_009441 6011048..6012325 McBride,M.J.,_Xie,G.,_Martens,E.C.,_Lapidus,A.,_Henrissat,B.,_Rhodes,R.G.,_Goltsman,E.,_Wang,W.,_Xu,J.,_Hunnicutt,D.W.,_Staroscik,A.M.,_Hoover,T.R.,_Cheng,Y.Q._and_Stein,J.L. NA 0:1278 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000685.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000268Source_DNA_available_from_Mark_McBride_(mcbride@uwm.edu)Bacteria_available_from_ATCC:_ATCC_17061Contacts:_Mark_McBride_(mcbride@uwm.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-PGFFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Flavobacterium_johnsoniae_UW101_chromosome,_complete_genome. NA Myroidaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Flavobacterium_johnsoniae_A5F9Z3_FLAJ1.gb Flavobacterium_Bergey_et_al._1923_(Approved_Lists_1980)_emend._Bernardet_et_al._1996 146297766 Appl._Environ._Microbiol._75_(21),_6864-6875_(2009) NA NC_009441 NA NA Flavobacteriales Cytophaga-Flexibacter-Bacteroides_phylum 19717629 1278 NA genomic_DNA NA UW101;_ATCC_17061 NA Vegetative_myxobacteria_Johnson_1932 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 376686 Bacteria,_Bacteroidetes,_Flavobacteriia,_Flavobacteriales,_Flavobacteriaceae,_Flavobacterium Novel_features_of_the_polysaccharide-digesting_gliding_bacterium_Flavobacterium_johnsoniae_as_revealed_by_genome_sequence_analysis NA NC_009441.1 TTAAAACTTATGTTCGTCTTTACTTATTACTAAAAATGAAATTAGAGAAATAAGCGCGGCCGTAACTAAATAGAACCCTACATAGCTCACATCGTATTTCTTTGCCAGCCAAATGGCAATCATTGGTGCAAAAGCCGCTCCCAGTATTCCTGCCATATTAAAAGTTAAAGAGGCACCAGAATAACGAACGTTTGTTGGAAACAACTCCGATAAAAATGTTCCTAAAGGTCCATAAGTAAAGCCCATTAAAGCCATTCCTATACAGGCAAAAGTTGTTACTAAGGCAATATTTCCTGTGCTTAAAAAGAATGAAAAGAAAAATCCAAAAACAGCAATTGCAGCCGTAGCCAGAATAAGCATTTTACGACGTCCTATTTTATCTGCCACAACAGCCGAAACCGGAATAAAAATGGCAAAAAACAATACTGAGAATAACTGAATTAATAATCCGTCTCTTTTAACAATTCCTAAGTCTGAAGTTGCCCAGCTCAATGTAAACACAGTCATTAAATAAAAAACCAGGAAAGTTGTAATTGCAGCAAACGTTCCAAAAATCAATTGGTTTTTATACGATTTTACTAATTCTAAAAAAGGAACTTTTACTTCCTCTTCATGCTTTTTAGCATTTTCAAAAGAAGGTGTTTCTGTTATTTTTGTTCGAATATAAAATCCTACGATTACCAAAAGAGCGCTGGCAATAAACGGAATTCTCCACCCGTAATCCATAAAATCTTCATTGCTCATGGAATCAGTCAATAATAAAAAAGTCCCGCCCGAAAGCAATAATCCAATTGGAGCACCCAATTGCGGGAACATTCCGTACCAGGCACGTTTGTGCGGCGGTGCATTTTCTATTGCCAATAAAACGGCTCCGCCCCATTCTCCTCCTAAACCAACGCCTTGCCCGAATCGGCAGAGCATTAATAACAAAGGAGCAGCAACACCAATACTGGCATAACTTGGCAAGAAACCTATTGTTACGGTCGAAATACCCATTGTTAATAAGGCAGCAACCAAAGTAAATTTACGCCCGATTTTATCGCCGTAATGTCCAAAAAAAGCTGAACCTAACGGACGAGACAAAAACGCTATTGAAAAAGTAGCTAACGATTCCAGAGTCGCCATAGTCGAATCTGAACCCGGAAAAAATAATTGCGGGAAAACCAATACTGCAGCATTGGCATAAATATAAAAATCAAAAAATTCAATTGTAGTTCCAATTAAAGAACCAAAAAGAACATGTTTTAATGAGTTCTTCTTTTTCGGGTTAGTTTCCAT > 578 FTCG_00221 NA galactose-proton_symporter EDN36038.1 11 MEAQKEYKRIVYLIATIAALGGLLFGLDQGFIGNAGDTLNKLYGLDAKAAGSFNAILATGGILGTICSGFFTKFFGRKNTLMIAGFAFLAGSLVSSFLPPINILTFCRFLLGFGVGLASFATPLYLAETAPTKIRGSISTLFQLMITFGIFLISLTNIIIVMCLGHQKISLALMFSVIAFFAFLMFVGCFFLPKSPRWLLSKGKDQEAHKVLTRLRAAHEIDTEIAETKKVLKTDHGSVVESLAKKYFWKILLVGVIIQMFQQLVGINMMIYYAPHFLSNVGLNVLIAALAVYLVNFLSTFPAIKWVEKWGRKKLLTVGAVVMMSSLLVSAVCFYFIKHTQDPADFIKYVLLISCLVYIFGFACSWGPVAWIICSEIFPIKTREIGMTVTTVVNWTFAGFVIANSNVIMTKVAFGDVIIFLVYAAFCLAAIFFLKMFVPETKGISLEKIEDNLISGKKLRDLGQ gamma_subgroup Francisella_novicida_GA99-3549 Francisella_novicida_GA99-3549 DS264128 259469..260863 Bearden,S.,_Garcia,E.,_Borowsky,M.L.,_Berlin,A.,_Young,S.,_Jaffe,D.,_Sykes,S.,_Alvarez,P.,_Butler,J.,_Gnerre,S.,_Grabherr,M.,_Mauceli,E.,_Brockman,W.,_Kodira,C.,_Alvarado,L.,_Zeng,Q.,_Crawford,M.,_Antoine,C.,_Devon,K.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1395 NA NA 25-MAY-2007 Francisella_tularensis_subsp._novicida_GA99-3549_supercont1.5_genomic_scaffold,_whole_genome_shotgun_sequence. NA Francisellaceae_Sjostedt_2005 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Francisella_novicida_A7JH47_FRANO.gb Francisella_Dorofeev_1947 148340611 Unpublished NA DS264128 NA NA Thiotrichales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives NA 1395 NA genomic_DNA NA GA99-3549 NA Pasteurella_novicida NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 430558 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Thiotrichales,_Francisellaceae,_Francisella The_Genome_Sequence_of_Francisella_tularensis_subsp._novicida_Strain_GA99-3549 NA DS264128.1 ATGGAAGCACAAAAAGAATATAAAAGGATAGTCTATCTAATTGCTACAATAGCAGCACTAGGCGGTTTGCTATTTGGTTTGGATCAGGGTTTTATCGGGAATGCTGGTGATACTCTTAATAAGCTCTATGGTTTAGATGCAAAGGCTGCTGGTAGCTTTAATGCTATCCTAGCAACTGGAGGTATTTTAGGTACTATTTGTAGTGGTTTTTTTACGAAATTTTTTGGTAGAAAAAATACACTAATGATTGCTGGGTTTGCTTTTTTGGCAGGATCGTTAGTTTCATCTTTTTTACCGCCAATAAATATACTAACGTTTTGTAGGTTTTTGCTTGGTTTTGGTGTTGGTTTAGCATCATTTGCTACACCTTTATATCTTGCGGAGACTGCACCAACTAAAATCAGAGGTTCGATTTCAACACTATTTCAGCTAATGATTACCTTTGGTATATTTTTGATTTCTTTAACTAATATAATCATCGTAATGTGTTTAGGTCATCAAAAAATTTCATTAGCATTAATGTTTAGTGTAATTGCTTTTTTTGCATTTTTGATGTTTGTTGGATGTTTCTTTTTACCAAAAAGCCCTAGATGGTTGCTATCTAAGGGCAAAGATCAAGAAGCGCACAAAGTGCTTACTAGACTAAGAGCAGCTCATGAGATTGATACTGAGATTGCAGAGACTAAAAAAGTCCTTAAGACTGATCATGGTTCTGTAGTGGAAAGTCTAGCTAAAAAATATTTCTGGAAAATATTACTTGTAGGTGTAATCATTCAAATGTTTCAACAGCTAGTTGGTATCAATATGATGATTTATTATGCGCCGCATTTTTTATCAAATGTTGGTCTAAATGTTTTAATAGCAGCGCTGGCAGTATATTTGGTGAATTTTTTATCAACATTTCCAGCTATTAAATGGGTTGAGAAATGGGGTAGGAAAAAATTATTGACAGTTGGAGCTGTTGTAATGATGTCCTCACTTCTAGTTTCTGCTGTTTGTTTCTATTTTATTAAACATACTCAAGATCCTGCTGATTTTATTAAGTATGTATTACTTATATCTTGTTTAGTCTATATTTTTGGCTTTGCTTGTTCATGGGGACCTGTTGCATGGATTATTTGTTCAGAGATTTTTCCTATCAAAACTAGAGAAATCGGTATGACTGTTACGACAGTTGTAAACTGGACATTTGCAGGCTTTGTGATTGCAAACTCAAATGTTATCATGACTAAAGTAGCATTTGGAGATGTTATTATTTTCCTTGTTTATGCTGCATTCTGTTTAGCTGCTATATTTTTCTTGAAAATGTTTGTACCAGAAACAAAAGGTATTAGCTTAGAGAAAATAGAAGATAACCTTATCTCAGGTAAAAAATTACGTGATTTAGGTCAATAG > 579 FTDG_00280 NA galactose-proton_symporter EDN37492.1 11 MEAQKEYKRIVYLIATIAALGGLLFGLDQGFIGNAGDTLNKLYGLDAKAAGSFNAILATGGILGTICSGFFTKFFGRKNTLMIAGFAFLAGALVSSFLPPINILTFCRFLLGFGVGLASFATPLYLAETAPTKIRGSISTLFQLMITFGIFLISLTNIIIVMCLGHQKISLALMFSVIAFFAFLMFVGCFFLPKSPRWLLSKGKDQEAHKVLTRLRAAHEIDTEIAETKKVLKTDHGSVVESLAKKYFWKILVVGVIIQMFQQLVGINMMIYYAPHFLSNVGLNVLVAALAVYLVNFLSTFPAIKWVEKWGRKKLLTVGAVVMMSSLVVSAVCFYFIKHTQDPADFIKYVLLISCLVYIFGFACSWGPVAWIICSEIFPIKTREIGMTVTTVVNWTFAGFVIANSNVIMTKVAFGDVIIFLVYAAFCLAAIFFLKMFVPETKGISLEKIEDNLISGKKLRDLGQ gamma_subgroup Francisella_novicida_GA99-3548 Francisella_novicida_GA99-3548 DS264589 327375..328769 Borowsky,M.L.,_Berlin,A.,_Young,S.,_Jaffe,D.,_Sykes,S.,_Alvarez,P.,_Butler,J.,_Gnerre,S.,_Grabherr,M.,_Mauceli,E.,_Brockman,W.,_Kodira,C.,_Alvarado,L.,_Zeng,Q.,_Crawford,M.,_Antoine,C.,_Devon,K.,_Garcia,E.,_Bearden,S.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1395 NA NA 01-JUN-2007 Francisella_tularensis_subsp._novicida_GA99-3548_supercont1.3_genomic_scaffold,_whole_genome_shotgun_sequence. NA Francisellaceae_Sjostedt_2005 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Francisella_novicida_A7JLA1_FRANO.gb Francisella_Dorofeev_1947 148535189 Unpublished NA DS264589 NA NA Thiotrichales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives NA 1395 NA genomic_DNA NA GA99-3548 NA Pasteurella_novicida NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 442346 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Thiotrichales,_Francisellaceae,_Francisella The_Genome_Sequence_of_Francisella_tularensis_subsp._novicida_Strain_GA99-3548 NA DS264589.1 ATGGAAGCACAAAAAGAATATAAAAGGATAGTCTATCTAATTGCTACAATAGCAGCACTAGGCGGTTTGCTATTTGGTTTGGATCAGGGTTTTATCGGGAATGCTGGTGATACTCTTAATAAGCTCTATGGTTTAGATGCAAAGGCTGCTGGTAGCTTTAATGCCATCCTAGCAACGGGAGGTATTTTAGGTACTATTTGTAGTGGTTTTTTTACGAAATTTTTTGGTAGAAAAAATACACTCATGATTGCTGGTTTTGCTTTTTTGGCAGGCGCTTTGGTTTCATCTTTTTTACCGCCGATAAATATACTAACGTTTTGTAGGTTTTTGCTTGGTTTTGGTGTTGGTTTGGCATCATTTGCTACACCTTTATATCTTGCTGAGACTGCACCAACTAAAATCAGAGGTTCGATTTCAACACTATTTCAGCTAATGATTACCTTTGGTATATTTTTGATTTCTTTAACTAATATAATCATCGTAATGTGTTTAGGTCATCAAAAAATTTCATTAGCATTAATGTTTAGTGTAATTGCTTTTTTTGCATTTTTGATGTTTGTTGGATGTTTCTTTTTACCAAAAAGCCCTAGATGGTTGCTATCTAAGGGCAAAGATCAAGAAGCGCACAAAGTTCTTACTAGACTAAGAGCAGCTCATGAGATTGATACTGAGATTGCAGAGACTAAAAAAGTCCTTAAGACTGATCATGGTTCTGTAGTGGAAAGTCTAGCTAAAAAATATTTCTGGAAAATATTAGTTGTAGGTGTAATCATTCAAATGTTTCAACAGCTAGTTGGTATCAATATGATGATTTATTATGCGCCGCATTTTTTATCAAATGTTGGTCTAAATGTTTTAGTAGCAGCGCTGGCAGTATATTTGGTGAATTTTTTATCAACATTTCCAGCTATTAAATGGGTTGAGAAATGGGGTAGGAAAAAATTATTGACAGTTGGAGCTGTTGTAATGATGTCCTCACTTGTAGTTTCTGCTGTTTGTTTCTATTTTATTAAACATACTCAAGATCCTGCTGATTTTATTAAGTATGTATTACTTATATCCTGTTTAGTCTATATTTTTGGCTTTGCTTGTTCATGGGGACCTGTTGCATGGATTATTTGTTCAGAGATTTTTCCTATCAAAACTAGAGAAATCGGTATGACTGTTACGACAGTTGTAAACTGGACATTTGCAGGCTTTGTGATTGCAAACTCAAATGTTATCATGACTAAAGTAGCATTTGGAGATGTTATTATTTTCCTTGTTTATGCTGCATTCTGTTTAGCTGCTATATTTTTCTTGAAAATGTTTGTACCAGAAACAAAAGGTATTAGCTTAGAGAAAATAGAAGATAACCTTATCTCAGGTAAAAAATTACGTGATTTAGGTCAATAG > 580 FTE_0476 NA MFS_transporter,_sugar_porter_(SP)_family EDX19487.1 11 MVTMIIFFSAMGGMLYGYDIGVINSAFLFINKDIPMSTFETSLLGGSVLFGGAFAILLAGFIADIIGRKRTLIVSGLIFIISVIMVYMSDNYVEILFARLVQGISVGFVTVTVPLYLTETVPGNIRGIAVTCFQLFLTAGILISNYVGLLFEATANWRGMFLSALVPAAIFFIGSIFLCKSPRWLVSVGRDKEAESVLNRIFEKNAAQRELNEIKEVIEKSRQEGSILKSLSHRHYLMPMLIVFAIAILAQMTGINSILQFSATILKESGLGSNYVAILGGVTITAINFLATLIAVFIADKFERKFIITFGTFMVSLSLIATGLVMSLVNAGETQGWLILAGMISFIFFFAIGPGAYVWVIMSELLPGAIRSKALSIALFLNSMASAILASVFLPINNFLGHGSMFYICGICTLVYSFIVFKFVPKTTGRSLEDIEAEFMK gamma_subgroup Francisella_novicida_FTE Francisella_novicida_FTE ABSS01000003 27780..29105 Godbole,S.,_Zhou,L.,_Bruce,D.,_Detter,J.C.,_Green,L.,_Johansen,M.E.,_Munk,A.C.,_Noronha,J.,_Robinson,M.,_Rogers,Y.,_Simmons,D.L.,_Tapia,R.,_Scheuermann,R.H._and_Brettin,T.S. NA 0:1326 The_sequencing_of_Francisella_tularensis_subsp._novicida_FTE_genomewas_performed_at_the_Los_Alamos_National_Laboratory(http://www.lanl.gov),_Los_Alamos,_NM._Source_DNA_is_available_fromTom_Brettin_(brettin@lanl.gov)._Annotation_was_performed_atBioHealthBase_(www.biohealthbase.org),_a_Bioinformatics_ResourceCenter_supported_by_the_NIH/NIAID._The_sequencing_was_supported_byIntelligence_Technology_Innovation_Center.In_1994,_U112_was_injected_into_a_mouse_and_colonies_were_isolatedfrom_the_liver._Stocks_of_3_virulent_colonies_were_created._M3_ismouse_isolate_#3.This_version_of_the_project,_FTE_ASSEMBLY,_represents_13x_coverageof_the_genome. NA 18-JUL-2008 Francisella_novicida_FTE_FTE_26,_whole_genome_shotgun_sequence. NA Francisellaceae_Sjostedt_2005 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Francisella_novicida_B4AQW2_FRANO.gb Francisella_Dorofeev_1947 194321980 Submitted_(09-JUL-2008)_BioHealthBase,_6000_Harry_Hines_Blvd,_Dallas,_TX_75390,_USA NA ABSS01000003 NA NA Thiotrichales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives NA 1326 NA genomic_DNA NA FTE NA Pasteurella_novicida NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 545422 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Thiotrichales,_Francisellaceae,_Francisella Direct_Submission NA ABSS01000003.1 TTACTTCATAAATTCTGCTTCAATATCTTCTAGTGAACGACCAGTAGTTTTTGGCACAAATTTAAATACAATAAAACTATATACTAAGGTACATATACCACATATATAAAACATGCTGCCATGACCTAAGAAATTGTTAATTGGCAAAAATACTGATGCTAATATTGCTGATGCCATACTATTTAGAAACAATGCTATACTTAGTGCCTTACTTCTGATAGCTCCTGGTAATAATTCTGACATAATCACCCAAACATAAGCACCTGGTCCAATAGCAAAAAAGAAGATAAAGCTAATCATTCCCGCAAGGATTAACCAACCTTGAGTTTCACCAGCATTAACTAACGACATAACTAAGCCAGTTGCTATTAGTGATAGTGAAACCATAAATGTACCAAATGTGATAATAAATTTCCTCTCAAACTTATCGGCGATAAACACTGCTATCAAAGTTGCTAAAAAGTTTATCGCTGTAATTGTAACACCACCAAGTATAGCAACATAGTTAGAACCAAGACCTGATTCCTTGAGTATTGTCGCTGAGAATTGTAAAATACTATTAATACCTGTCATCTGTGCTAGAATTGCTATTGCAAAAACAATTAGCATAGGCATTAAGTAGTGTCTATGGCTTAGAGATTTTAAAATACTACCTTCTTGTCTAGATTTCTCAATAACTTCTTTTATTTCGTTTAATTCTCGTTGTGCAGCATTTTTTTCAAATATTCTATTGAGGACACTCTCTGCTTCTTTGTCTCTACCTACCGACACTAACCATCTTGGCGACTTACATAAAAATATTGAGCCAATAAAAAATATTGCTGCAGGAACCAGTGCTGATAAAAACATTCCACGCCAATTTGCTGTTGCTTCGAATAAAAGACCAACGTAGTTTGAAATCAATATTCCCGCAGTTAGAAAGAGCTGAAAACATGTTACAGCAATACCCCTAATATTTCCAGGAACAGTTTCTGTAAGGTATAATGGTACTGTTACAGTCACGAAACCTACAGAAATACCTTGAACTAGACGAGCAAAAAGAATCTCGACGTAATTATCTGACATATAAACCATTATTACCGATATTATAAATATCAGTCCTGAAACAATAAGTGTTCTCTTTCTACCAATAATATCAGCAATAAAACCAGCTAGTAATATTGCAAATGCACCACCAAAAAGTACCGAACCTCCCAGTAAAGATGTTTCAAATGTGCTCATAGGAATATCTTTATTGATAAACAAAAAAGCACTATTTATCACCCCTATATCATAACCATATAGCATTCCTCCCATCGCTGAAAAGAAAATAATCATAGTCACCAT > 581 FTG_1370 NA galactose-proton_symporter,_major_facilitator_superfamily EDZ91174.1 11 MAIIAALAGLLFGMDIGYVNGSLHFISETFDLSVEQSGHVSSVLLLGAACGALFSGFLSKRYGRRKVLLIAAAIFSIFTIVGILAPNYQIFISSRFILGIAVGIASFIAPLYLSEIAPKEFRGALIALYQLMITIGLFLVFLTNSALERTGSWRVMLAVLAIPSVIMFFGCLTLPRSPRWLILKGNDNEAALVLKKIRSSEAEALEEHNEIKQTTHRGVSVFSLLKQKFFIKVVLLGIALQAFQQFTGMNAFMYYSTDIFKLAGFTNPSTSTIVIGLLNMLTTFLAIKYVDKFGRKPILYFGLSLLIISCIIVGFIFKTHFVYGQTMVLSQTLQWTALIFCLLFIFGFAISMGPVIWILCSEIQPIEGRDFGVTASTMSNWICNAIIGNFALTWLTFHPDSTFFGFAISCIICILFVKFFVPETKDVSLEEIENNLRSGKSLARIGR gamma_subgroup Francisella_novicida_FTG Francisella_novicida_FTG ABXZ01000001 246487..247830 Godbole,S.,_Zhou,L.,_Bruce,D.,_Detter,J.C.,_Green,L.,_Johansen,M.E.,_Munk,A.C.,_Noronha,J.,_Robinson,M.,_Rogers,Y.,_Simmons,D.L.,_Tapia,R.,_Scheuermann,R.H._and_Brettin,T.S. NA 0:1344 The_sequencing_of_Francisella_novicida_FTG_genome_was_performed_atthe_Los_Alamos_National_Laboratory_(http://www.lanl.gov),_LosAlamos,_NM._Source_DNA_is_available_from_Tom_Brettin(brettin@lanl.gov)._Annotation_was_performed_at_BioHealthBase(www.biohealthbase.org),_a_Bioinformatics_Resource_Center_supportedby_the_NIH/NIAID._The_sequencing_was_supported_by_IntelligenceTechnology_Innovation_Center.Coverage:_12x. NA 21-JAN-2009 Francisella_novicida_FTG_FTG_28,_whole_genome_shotgun_sequence. NA Francisellaceae_Sjostedt_2005 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Francisella_novicida_E2MNI0_FRANO.gb Francisella_Dorofeev_1947 208744667 Submitted_(03-OCT-2008)_BioHealthBase,_6000_Harry_Hines_Blvd,_Dallas,_TX_75390,_USA NA ABXZ01000001 NA NA Thiotrichales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives NA 1344 NA genomic_DNA NA FTG NA Pasteurella_novicida NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 563990 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Thiotrichales,_Francisellaceae,_Francisella Direct_Submission NA ABXZ01000001.1 GTGGCTATAATAGCAGCACTTGCGGGTCTGCTTTTTGGTATGGATATTGGTTATGTTAACGGCTCGTTGCATTTCATATCAGAAACATTTGATTTAAGTGTTGAGCAAAGTGGACATGTATCAAGTGTCTTGCTGCTTGGAGCTGCTTGTGGAGCATTATTTAGTGGTTTTTTATCAAAGCGCTATGGACGTAGAAAGGTACTTCTAATTGCAGCAGCTATTTTTTCTATTTTTACAATAGTGGGAATTTTGGCACCTAACTACCAAATTTTTATTAGCTCAAGATTTATCTTGGGTATTGCGGTAGGTATTGCTTCATTTATTGCACCTTTGTATCTGTCAGAAATTGCCCCAAAAGAGTTTAGAGGCGCTTTGATTGCTTTGTACCAGTTAATGATAACTATTGGTTTATTTTTGGTTTTCTTAACTAACTCTGCATTAGAAAGGACAGGTTCTTGGAGGGTTATGCTTGCAGTTTTAGCAATTCCTTCAGTAATAATGTTCTTTGGCTGCTTGACATTACCTAGAAGTCCAAGATGGCTGATTTTAAAAGGTAACGATAATGAGGCTGCTTTGGTTCTCAAAAAAATAAGATCAAGCGAAGCAGAAGCATTAGAAGAGCATAATGAGATTAAACAAACAACACATAGAGGTGTTAGTGTTTTTTCTTTACTCAAGCAGAAGTTTTTTATAAAAGTTGTACTACTAGGTATAGCTTTGCAGGCATTTCAACAGTTCACTGGTATGAATGCTTTTATGTATTACTCAACAGATATCTTTAAATTAGCAGGATTTACTAATCCTTCAACATCAACAATAGTGATTGGTTTACTTAATATGCTTACAACCTTTTTGGCAATTAAGTATGTTGATAAATTTGGGCGTAAGCCAATTTTATACTTTGGCTTAAGCTTATTGATAATCTCATGTATTATTGTTGGTTTTATCTTTAAAACACACTTTGTTTATGGTCAAACAATGGTCTTATCACAAACATTACAATGGACTGCCTTGATATTTTGTTTATTGTTCATATTCGGGTTTGCAATTTCTATGGGGCCTGTGATTTGGATTTTATGTTCAGAAATCCAACCAATTGAGGGTAGAGATTTTGGGGTAACAGCATCGACTATGAGTAATTGGATTTGTAATGCTATTATAGGTAATTTTGCACTTACTTGGCTAACATTTCACCCTGATAGTACTTTCTTTGGCTTTGCGATTTCTTGTATAATTTGTATATTATTTGTTAAGTTTTTTGTACCTGAAACTAAGGATGTTTCATTGGAGGAAATTGAAAACAATCTTAGGTCAGGAAAATCTTTAGCAAGAATCGGTCGTTAA > 582 FTPG_00335 NA predicted_protein EET21476.1 11 MQQDQQKSPKLYVTIIVAVAAIGGLLFGFDTSIIAGATPFIQKDFLASHWQLEMVVSFCVLGAFFGALASGYFTDKFGRKRVMIATSLLFIIGTLIASLAPDIATLVIGRFMLGAAIGVASYAVPLFIAEVAPASKRGSLVLWNGAFLTGGQVIAFIVDYCLTSSGSWRIMIATGLVPAIMLFIGMCFMPYSPKWLFSKGRKHEARETLAKIRETQQDVSKELLAIQNNLQTTTKLKFSAIFNKKVRPVLYIGLALGIFQQFFGINTVMYYGPYIMENIGFDGNEMQMLMTLSLGLVNFIATIITIIFIDKLGRRKFLLIGSAMAALSLFSMIYLLNNVTSSTVAILALICLLIYIVGYCISVGSLFWLIISEIFPLNVRGSAMSFVASIQWLANFVVAATFLTILTKLGVSFTFGIYACVASLAFIVTYLFVPETKGVDLETIENNLNKGIKTRYLGKEI gamma_subgroup Francisella_philomiragia_subsp._philomiragia_ATCC_25015 Francisella_philomiragia_subsp._philomiragia_ATCC_25015 DS999316 328657..330042 Bearden,S.,_Schriefer,M.E.,_Young,S.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Walk,T.,_White,J.,_Yandava,C.,_Ilzarbe,M.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1386 Genome_Coverage:_28.68xSequencing_Technology:_454Annotation_added_to_the_scaffolds_in_July_2009. NA 29-JUL-2009 Francisella_philomiragia_subsp._philomiragia_ATCC_25015_supercont1.9_genomic_scaffold,_whole_genome_shotgun_sequence. NA Francisellaceae_Sjostedt_2005 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Francisella_philomiragia_C6YVN1_9GAMM.gb Francisella_Dorofeev_1947 218750480 Unpublished NA DS999316 NA NA Thiotrichales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives NA 1386 NA genomic_DNA NA ATCC_25015 NA Yersinia_philomiragia_Jensen_et_al._1969_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 539329 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Thiotrichales,_Francisellaceae,_Francisella Annotation_of_Francisella_philomiragia_subsp._philomiragia_strain_ATCC_25015 NA DS999316.1 TTAAATTTCTTTACCTAAATATCTTGTTTTTATACCTTTATTAAGATTATTTTCAATAGTCTCAAGATCAACTCCTTTTGTTTCTGGAACGAAAAGATATGTAACAATAAATGCTAAACTTGCTACACAAGCATATATTCCAAAAGTAAATGAAACTCCTAGTTTTGTTAAGATGGTTAAAAATGTTGCAGCAACAACAAAATTAGCTAGCCATTGTATAGATGCTACAAAACTCATGGCAGATCCTCTAACATTTAAGGGAAAAATTTCCGAAATAATTAGCCAGAACAGAGAACCGACACTAATACAATATCCAACAATATATATTAAAAGACAAATTAAAGCTAATATTGCAACTGTACTACTCGTAACATTATTAAGTAAATAAATCATACTAAACAAACTTAATGCAGCCATTGCAGATCCAATTAGTAGAAACTTTCTTCTCCCTAATTTATCAATAAATATTATAGTTATAATTGTAGCTATAAAGTTAACAAGCCCTAATGAAAGAGTCATAAGCATTTGCATTTCATTACCATCAAAGCCAATATTTTCCATTATATACGGTCCATAATACATTACTGTATTGATACCAAAAAATTGTTGAAATATTCCAAGAGCCAAGCCAATGTATAAGACAGGGCGGACTTTCTTATTGAAAATAGCAGAAAATTTCAGTTTAGTTGTCGTTTGGAGATTATTCTGTATAGCTAATAATTCTTTAGAAACATCCTGTTGTGTTTCTCTAATTTTAGCTAGAGTTTCACGAGCTTCATGCTTTCTTCCTTTAGAGAATAACCACTTAGGTGAGTAGGGCATAAAGCACATTCCAATAAATAACATTATCGCAGGAACCAAACCTGTAGCAATCATAATCCTCCAACTACCGCTACTAGTTAGGCAGTAATCAACTATAAATGCTATAACTTGTCCACCTGTTAAGAAAGCACCATTCCAAAGGACTAGAGATCCTCTTTTAGATGCTGGAGCAACTTCTGCTATAAATAGTGGAACAGCATAAGATGCTACACCAATAGCCGCACCTAACATGAATCTACCAATAACTAATGTTGCAATGTCTGGAGCTAAAGAAGCTATTAAAGTACCAATTATAAATAATAAGCTGGTAGCAATCATAACTCTTTTACGACCAAACTTGTCAGTAAAATAACCACTAGCGAGAGCTCCAAAAAAGGCTCCTAGAACACAGAAACTAACAACCATTTCAAGTTGCCAATGACTTGCTAAGAAATCCTTTTGTATAAATGGAGTAGCTCCAGCAATAATAGATGTATCAAAACCAAATAATAAGCCACCAATTGCAGCTACAGCAACAATAATAGTTACATAAAGTTTTGGCGATTTTTGTTGATCTTGTTGCAT > 583 FTM_0739 NA galactose-proton_symporter YP_001891493.1 11 MEAQKEYKRIVYIIATIAALGGLLFGLDQGFIGNAGDTLNKLYGLDAKAAGSFNAILVTGGILGTICSGFFTKFFGRKNTLMIAGFAFLAGALVSSFLPPINILTFCRFLLGFGVGLASFATPLYLAETASTKIRGSISTLFQLMITFGIFLISLTNIIIVMCLGHQKISLALMFSVIAFFAFLMFVGCFFLPKSPRWLLSKGKDQEAHKVLTRLRAAHEIDTEIAETKKVLKTDHGSVVESLAKKYFWKILLVGVIIQMFQQLVGINMMIYYAPHFLSNVGLNVLIAALAVYLVNFLSTFPAIKWVEKWGRKKLLTVGAVVMMSSLVVSAVCFYFIKHTQDPADFIKYVLLISCLVYIFGFACSWGPVAWIICSEIFPIKTREIGMTVTTVVNWTFAGFVIANSNVIMTKVAFGDVIIFLVYAAFCLAAIFFLKMFVSETKGVSLEKIEDNLISGKKLRDLGQ gamma_subgroup Francisella_tularensis_subsp._mediasiatica_FSC147 Francisella_tularensis_subsp._mediasiatica_FSC147 NC_010677 803639..805033 Larsson,P.,_Elfsmark,D.,_Svensson,K.,_Wikstrom,P.,_Forsman,M.,_Brettin,T.,_Keim,P._and_Johansson,A. NA 0:1395 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000915.The_authors_wish_to_acknowledge_the_Intelligence_TechnologyInnovation_Center_for_funding_the_sequencing_and_the_SwedishDefence_Research_Agency_in_cooperation_with_the_Medical_Faculty_atUmea_University,_Sweden_for_funding_the_annotation.F._tularensis_subsp._mediasiatica_FSC147_DNA_was_provided_by_theSwedish_Defence_Research_Agency.COMPLETENESS:_full_length. NA 26-JAN-2012 Francisella_tularensis_subsp._mediasiatica_FSC147_chromosome,_complete_genome. NA Francisellaceae_Sjostedt_2005 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Francisella_tularensis_B2SG56_FRATM.gb Francisella_Dorofeev_1947 187930913 PLoS_Pathog._5_(6),_E1000472_(2009) NA NC_010677 NA NA Thiotrichales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives 19521508 1395 NA genomic_DNA NA FSC147;_GIEM_543 NA Pasteurella_tularensis NA forward NA NA NA NA NA NA Francisella_tularensis_var._mediasiatica NA NA NA prokaryotes NA 441952 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Thiotrichales,_Francisellaceae,_Francisella Molecular_evolutionary_consequences_of_niche_restriction_in_Francisella_tularensis,_a_facultative_intracellular_pathogen NA NC_010677.1 ATGGAAGCACAAAAAGAATATAAAAGGATAGTCTATATAATTGCTACAATAGCAGCACTAGGTGGTTTGCTATTTGGTTTGGATCAGGGTTTTATCGGTAATGCTGGTGATACTCTTAATAAGCTCTATGGTTTAGATGCAAAGGCTGCTGGTAGCTTTAATGCTATCCTAGTAACGGGAGGTATTTTAGGTACTATTTGTAGTGGTTTTTTTACGAAATTTTTTGGTAGAAAAAATACACTAATGATTGCTGGGTTTGCTTTTTTGGCAGGCGCTTTGGTTTCATCTTTTTTACCTCCGATAAATATACTAACGTTTTGTAGGTTTTTGCTTGGTTTTGGTGTTGGTTTGGCATCATTTGCTACACCTTTATATCTTGCGGAGACTGCATCAACTAAGATCAGAGGTTCGATTTCAACACTATTTCAGCTAATGATTACCTTTGGTATATTTTTGATTTCTTTAACTAATATAATTATCGTAATGTGTTTAGGTCATCAAAAAATTTCATTAGCATTAATGTTTAGTGTAATTGCTTTTTTTGCATTTTTGATGTTTGTTGGATGTTTCTTTTTACCAAAAAGCCCTAGATGGTTGCTATCTAAGGGCAAAGATCAAGAAGCGCATAAAGTTCTTACTAGACTAAGAGCAGCTCATGAGATTGATACTGAGATTGCGGAGACTAAAAAAGTCCTTAAGACTGATCATGGTTCTGTAGTGGAAAGTCTAGCTAAAAAATATTTCTGGAAAATATTACTTGTAGGTGTAATCATTCAAATGTTTCAACAGCTAGTTGGTATCAATATGATGATTTATTATGCGCCGCATTTTTTATCAAATGTTGGTCTAAATGTTTTAATAGCAGCGCTGGCAGTATATTTGGTGAATTTTTTATCAACATTTCCAGCTATTAAATGGGTTGAGAAATGGGGTAGGAAAAAATTATTGACAGTTGGAGCTGTTGTAATGATGTCCTCACTTGTAGTTTCTGCTGTTTGTTTCTATTTTATTAAACATACTCAAGATCCTGCTGATTTTATTAAGTATGTATTACTTATATCCTGTTTAGTCTATATTTTTGGCTTTGCTTGTTCATGGGGACCTGTTGCATGGATTATTTGTTCAGAGATTTTTCCTATCAAAACTAGAGAAATCGGTATGACTGTTACGACAGTTGTAAACTGGACATTTGCAGGCTTTGTGATTGCAAACTCAAATGTTATCATGACTAAAGTAGCATTTGGAGATGTTATTATTTTCCTTGTTTATGCTGCATTCTGTTTAGCGGCTATATTTTTCTTGAAAATGTTTGTATCAGAAACAAAAGGTGTTAGCTTAGAGAAAATAGAAGATAACCTTATCTCAGGTAAAAAATTACGTGATTTAGGTCAATAG > 584 Francci3_1768 NA major_facilitator_transporter YP_480873.1 11 MPTPHNRDRSALRILLTSMIGSAIEWYDFYLYSTASALVLGPLFFPKSSPQAQILAVFATYAAGFLARPIGGLLAGHLGDRVGRKSILVLTLGVMGMATFLVGLLPTSNQVGVLAPALLIVLRVLQGIGIGGEWGGGVLLAVENAPPGRGGWYSSWPLLGFPVGLALSTLTWTALAQLPRQELLSWGWRLPFLASVVLVGIGLYVRLGIAETPEFSQARAAGEVVRLPVAQVLREQPRHVLCGLLAALGVGSTVSLYSVFLLSTVATGGGRHDVALTALVISAALQCLSIPLFATLSDRIGRKPLMVFGYAVAAATTVPALLWFDSGNLLAVSAIYVMAISIGHGGCYGNLAAFLSELFPPTRRFSALAVTYQVGVTVASFLPLAATAIASGTRMTVDVALLFCGVATVAAIATSLAPQPFMPSTTTPVGDHVATVS high_GC_Gram+ Frankia_sp._CcI3 Frankia_sp._CcI3 NC_007777 2102801..2104114 Normand,P.,_Lapierre,P.,_Tisa,L.S.,_Gogarten,J.P.,_Alloisio,N.,_Bagnarol,E.,_Bassi,C.A.,_Berry,A.M.,_Bickhart,D.M.,_Choisne,N.,_Couloux,A.,_Cournoyer,B.,_Cruveiller,S.,_Daubin,V.,_Demange,N.,_Francino,M.P.,_Goltsman,E.,_Huang,Y.,_Kopp,O.R.,_Labarre,L.,_Lapidus,A.,_Lavire,C.,_Marechal,J.,_Martinez,M.,_Mastronunzio,J.E.,_Mullin,B.C.,_Niemann,J.,_Pujic,P.,_Rawnsley,T.,_Rouy,Z.,_Schenowitz,C.,_Sellstedt,A.,_Tavares,F.,_Tomkins,J.P.,_Vallenet,D.,_Valverde,C.,_Wall,L.G.,_Wang,Y.,_Medigue,C._and_Benson,D.R. NA 0:1314 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000249.URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Louis_Tisa(lst@patia.unh.edu)Contact:_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-PGFFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 19-JAN-2012 Frankia_sp._CcI3_chromosome,_complete_genome. NA Frankiaceae_Becking_1970_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Frankia_sp_Q2JC48_FRASC.gb Frankiella 86738724 Genome_Res._17_(1),_7-15_(2007) NA NC_007777 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 17151343 1314 NA genomic_DNA NA CcI3 NA Frankia_sp._CcI3 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Frankineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 106370 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Frankineae,_Frankiaceae,_Frankia Genome_characteristics_of_facultatively_symbiotic_Frankia_sp._strains_reflect_host_range_and_host_plant_biogeography NA NC_007777.1 TTGCCGACCCCCCATAACCGGGACCGGTCGGCGCTACGGATCCTGCTGACGAGCATGATCGGCAGCGCCATCGAATGGTACGACTTCTACCTGTACTCCACCGCGTCGGCGCTGGTACTGGGGCCGCTGTTCTTCCCTAAGAGCTCGCCTCAGGCCCAGATCCTGGCTGTGTTCGCGACCTACGCAGCCGGCTTTCTGGCCCGGCCAATCGGTGGCCTGCTTGCCGGACACCTCGGCGACCGGGTCGGGCGCAAGTCGATCCTGGTGCTGACTCTCGGCGTGATGGGGATGGCCACGTTTCTCGTCGGCCTGCTGCCTACCAGCAACCAGGTCGGGGTGCTGGCCCCCGCGCTGCTGATCGTGCTGCGCGTGTTGCAGGGGATCGGCATCGGCGGCGAGTGGGGCGGCGGGGTGCTGCTGGCGGTGGAGAACGCCCCACCGGGCCGGGGCGGATGGTACAGCAGCTGGCCGCTGCTGGGGTTCCCGGTCGGCCTCGCGTTGAGCACCCTCACCTGGACGGCGCTGGCCCAGCTGCCCAGGCAGGAGCTACTGTCCTGGGGCTGGCGTCTCCCGTTCCTGGCCTCTGTGGTGCTGGTGGGCATCGGACTGTACGTGCGACTGGGCATCGCCGAGACCCCTGAGTTCAGCCAGGCCAGGGCCGCGGGCGAGGTGGTGCGGCTACCGGTGGCACAGGTCCTGCGCGAGCAGCCGCGCCACGTGCTGTGCGGGCTACTGGCGGCGCTCGGAGTGGGCAGCACGGTCTCGCTCTACAGCGTCTTCCTGCTGTCCACCGTGGCCACAGGAGGTGGTCGCCACGATGTCGCGCTGACTGCACTGGTCATCAGCGCCGCGTTGCAGTGTCTCTCGATACCGCTGTTCGCCACACTGTCGGATCGGATCGGGCGCAAACCATTGATGGTGTTCGGTTACGCGGTCGCCGCAGCGACCACCGTCCCGGCGCTGCTGTGGTTCGACAGTGGAAACCTACTCGCGGTGAGCGCAATCTACGTCATGGCCATATCGATCGGGCACGGCGGCTGCTATGGTAATCTCGCGGCATTCCTCTCCGAGCTGTTCCCGCCTACCCGGCGATTCTCCGCGCTTGCGGTGACGTACCAAGTTGGTGTCACCGTCGCCAGCTTCCTCCCGTTGGCCGCCACAGCGATTGCCTCCGGCACGCGCATGACCGTCGATGTCGCACTGCTGTTCTGCGGTGTCGCCACCGTCGCCGCGATCGCGACTTCCCTGGCACCCCAACCTTTCATGCCATCCACCACCACCCCCGTAGGCGATCATGTAGCTACCGTGAGCTAA > 585 NA NA phosphate_permease ACQ72489.1 NA LSSIITSEFATTKWRGAMMAAVFAMQGIGQLVAALVMMFLTLGFKSSLEQAADTKSCTGDCQIAVDKMWRTLVGFGAVPACIALYYRLTIPETPRYTFDVARDVEQADEDVKAYINGKSEGNTDEVTRAQNLQSAKTNLEVPKASWRDFFQHYSKWKNAS Sordariomycetes Fusarium_asiaticum Fusarium_asiaticum FJ594216 1..24 Li,W.,_Chen,H._and_Zhang,A. NA 0:24 NA NA 10-MAY-2009 Fusarium_asiaticum_strain_F8315_phosphate_permease_(PHO)_gene,_partial_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Fusarium_asiaticum_C4NTG8_FUSAS.gb Fusarium 229471913 Unpublished fungi FJ594216 phosphate_permease NA pyrenomycetes sac_fungi NA 24 NA genomic_DNA NA F8315 NA Fusarium_asiaticum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 282267 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_mitosporic_Hypocreales,_Fusarium Phylogenetic_analysis,_chemotype_diversity,_and_pathogenicity_of_the_Fusarium_graminearum_clade_in_China NA FJ594216.1 ATTGTCTTCCATCATTACTTCAGA > 586 NA NA phosphate_permease ACQ72463.1 NA SSIITSEFATTKWRGAMMAAVFAMQGIGQLVAALVMMFLTLGFKSSLEQAADTKSCTGDCQIAVDKMWRTLVGFGAVPACIALYYRLTIPETPRYTFDVARDVEQADEDVKAYINGKSEGNTDEVTRAQNLQSAKTNLEVPKASWRDFFQHYSKWKNASL Sordariomycetes Fusarium_asiaticum Fusarium_asiaticum FJ594190 1..22 Li,W.,_Chen,H._and_Zhang,A. NA 0:22 NA NA 10-MAY-2009 Fusarium_asiaticum_strain_F0028_phosphate_permease_(PHO)_gene,_partial_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Fusarium_asiaticum_C4NTH2_FUSAS.gb Fusarium 229471861 Unpublished fungi FJ594190 phosphate_permease NA pyrenomycetes sac_fungi NA 22 NA genomic_DNA NA F0028 NA Fusarium_asiaticum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 282267 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_mitosporic_Hypocreales,_Fusarium Phylogenetic_analysis,_chemotype_diversity,_and_pathogenicity_of_the_Fusarium_graminearum_clade_in_China NA FJ594190.1 TGTCTTCCATCATTACTTCAGA > 587 NA NA phosphate_permease ACQ72483.1 NA SSIITSEFATTKWRGAMMAAVFAMQGIGQLVAALVMMFLTLGFKSSLEQAADTKSCTGDCQIAVDKMWRTLVGFGAVPACIALYYRLTIPETPRYTFDVARDVEQADEDVKAYINGKSEGNTDEVTRAQNLQSAKTNLEVPKASWRDFFQHYSKWKNAS Sordariomycetes Fusarium_asiaticum Fusarium_asiaticum FJ594210 1..21 Li,W.,_Chen,H._and_Zhang,A. NA 0:21 NA NA 10-MAY-2009 Fusarium_asiaticum_strain_F0606_phosphate_permease_(PHO)_gene,_partial_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Fusarium_asiaticum_C4NTJ2_FUSAS.gb Fusarium 229471901 Unpublished fungi FJ594210 phosphate_permease NA pyrenomycetes sac_fungi NA 21 NA genomic_DNA NA F0606 NA Fusarium_asiaticum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 282267 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_mitosporic_Hypocreales,_Fusarium Phylogenetic_analysis,_chemotype_diversity,_and_pathogenicity_of_the_Fusarium_graminearum_clade_in_China NA FJ594210.1 GTCTTCCATCATTACTTCAGA > 588 NA NA phosphate_permase AAT45956.1 NA IMGVGIGGDYPLSSIITSEFATTKWRGAMMAAVFAMQGIGQLVAALVMMFLTLGFKSSLEQAADTKSCTGDCQIAVDKMWRTLVGFGAVPACIALYYRLTIPETPRYTFDVARDVEQADEDVKAYINGKSEGNTDEVTRAQNLQSA Sordariomycetes Fusarium_brasilicum Fusarium_brasilicum AY452915 1..57 ODonnell,K.,_Ward,T.J.,_Geiser,D.M.,_Corby_Kistler,H._and_Aoki,T. NA 0:57 NA NA 11-JUN-2004 Fusarium_brasilicum_strain_NRRL31238_phosphate_permase_gene,_partial_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Fusarium_brasilicum_Q6JIW9_9HYPO.gb Fusarium 48527694 Fungal_Genet._Biol._41_(6),_600-623_(2004) fungi AY452915 phosphate_permase NA pyrenomycetes sac_fungi 15121083 57 NA genomic_DNA NA NRRL31238 NA Fusarium_brasilicum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 281087 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_mitosporic_Hypocreales,_Fusarium Genealogical_concordance_between_the_mating_type_locus_and_seven_other_nuclear_genes_supports_formal_recognition_of_nine_phylogenetically_distinct_species_within_the_Fusarium_graminearum_clade NA AY452915.1 TATCATGGGCGTGGGTATCGGTGGTGACTATCCATTGTCTTCCATCATTACTTCAGA > 589 NA NA phosphate_permease ADV03922.1 NA TSEFATTKWRGAMMAAVFAMQGIGQLVAALVMMFLTLGFKPSLEQAADTKSCTGDCQIAVDKMWRTLVGFGAVPACIALYCRLTIPETPRYTFDVARDVEQADEDVKAYINGKSEGNTDEVSRAQNLQSAKTNLEVPKASWRDFIQHYSKWKNASLLLGTAGSWFCLDVAFYGLSLNNGTILKVIGYSTKDATNVYEFLPNPAVGNIIIVLPGAVPGYWVSVATIDTLGRKTIQLGGFIILTILFIV Sordariomycetes Fusarium_cerealis Fusarium_cerealis HQ687676 1..10 Schmale,D.,_Wood-Jones,A.,_Cowger,C.,_Bergstrom,G._and_Arrellano,C. NA 0:10 NA NA 12-JAN-2011 Fusarium_cerealis_isolate_NIV7_phosphate_permease_(PHO)_gene,_partial_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Fusarium_cerealis_E7EFE4_FUSCE.gb Fusarium 317141255 Unpublished fungi HQ687676 phosphate_permease NA pyrenomycetes sac_fungi NA 10 NA genomic_DNA NA NA NA Fusarium_sp._ICMP10465Q NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 56641 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_mitosporic_Hypocreales,_Fusarium Trichothecene_Genotypes_of_Gibberella_zeae_from_Winter_Wheat_Fields_in_the_Eastern_United_States NA HQ687676.1 TTACTTCAGA > 590 NA NA phosphate_permease ABD38368.2 NA SSIITSEFATTKWRGAMMAAVFAMQGIGQLVAALVMMFLTLGFKSSLEQAADTKSCTGDCQIAVDKMWRTLVGFGAVPACIALYYRLTIPETPRYTFDVARDVEQADEDVKAYINGKSEGNTDEVSRAQNLQSAKTNLEVPKASWRDFIQHYSKWKNASLLLGTAGSWFCLDVAFHGLSLNNGTILKVIGYSTKDATNVYEFLHNTAVGNIIIVLAGAVPGYWVSVATIDTLGRKTIQLGGFIILTILFI Sordariomycetes Fusarium_pseudograminearum Fusarium_pseudograminearum DQ382082 1..20 Scott,J.B._and_Chakraborty,S. NA 0:20 NA NA 14-FEB-2011 Fusarium_pseudograminearum_isolate_CS3907_phosphate_permease_and_phosphate_permease_2_genes,_partial_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Fusarium_pseudograminearum_A1BNR1_FUSPS.gb Fusarium 87475585 Mycol._Res._110_(PT_12),_1413-1425_(2006) fungi DQ382082 phosphate_permease NA pyrenomycetes sac_fungi 17123809 20 NA genomic_DNA NA NA NA Fusarium_pseudograminearum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 101028 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_mitosporic_Hypocreales,_Fusarium Multilocus_sequence_analysis_of_Fusarium_pseudograminearum_reveals_a_single_phylogenetic_species NA DQ382082.1 TCTTCCATCATCACTTCAGA > 591 NA NA phosphate_permease ABD38382.2 NA SSIITSEFATTKWRGAMMAAVFAMQGIGQLVAALVMMFLTLGFKSSLEQAADTKSCTGDCQIAVDKMWRTLVGFGAVPACIALYYRLTIPETPRYTFDVARDVEQADEDVKAYINGKSEGNTDEVTRAQNLQSAKTNLEVPKASWRDFIQHYSKWKNASLLLGTAGSWFCLDVAFYGLSLNNGTILKVIGYSTKDATNVYEFLHNTAVGNIIIVLAGAVPGYWVSVATIDTLGRKTIQLGGFIILTILFI Sordariomycetes Fusarium_pseudograminearum Fusarium_pseudograminearum DQ382089 1..20 Scott,J.B._and_Chakraborty,S. NA 0:20 NA NA 14-FEB-2011 Fusarium_pseudograminearum_isolate_CAN48_phosphate_permease_and_phosphate_permease_2_genes,_partial_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Fusarium_pseudograminearum_A1BNZ9_FUSPS.gb Fusarium 87475606 Mycol._Res._110_(PT_12),_1413-1425_(2006) fungi DQ382089 phosphate_permease NA pyrenomycetes sac_fungi 17123809 20 NA genomic_DNA NA NA NA Fusarium_pseudograminearum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 101028 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_mitosporic_Hypocreales,_Fusarium Multilocus_sequence_analysis_of_Fusarium_pseudograminearum_reveals_a_single_phylogenetic_species NA DQ382089.1 TCTTCCATCATCACTTCAGA > 592 GB2207_06753 COG0477_Permeases_of_the_major_facilitator_superfamily MFS_transporter EAS46531.1 11 MEYRSYYAIYCAIFVSLGGFVFGFDASVVSGIIGPVTIEFGLTPIQAGFVVAAPTLSSAIGTLMIGPLSDAFGRKKILMFIAVLYLISAVSSALSTSYYMLLAARALGGFAFTSLVIAPMYIAEIAPAKRRGKLVSVNQLNIVIGLSAAYFANYYILGLSSSGADWVSAWGVDQHAWRYMLGFEIVPALIYLVALFAIPDSPRWLIQKGREQEARAVIAKLVPADQVDSEMSLITQSSATVTESLWARIGGIFGPKMRLALIVGIIVAVVQQITGINAIFFYAPTIFEQSGIGTDAAFAQAVLVGLINVVFTLVAIALIDRWGRRPLLLVGLSGIAISMALCTYGFSQATYELKSESVVQMQQMETADANFDASQLNSLVGVVYQSDVEFKTAVSEAIGIEAARKYESELIKSSAQMNALLILVGILGFVASFAMSLGPVMWALFSEIFPNQLRGVAISFVGMINSMVSFMVQLLFPLELSVLGAALTFFSYFVFAVIGLILVAWLLPETKGKSLEELETMFGTKASTGSPA gamma_subgroup gamma_proteobacterium_HTCC2207 gamma_proteobacterium_HTCC2207 AAPI01000006 110476..112074 Giovannoni,S.J.,_Cho,J.-C.,_Ferriera,S.,_Johnson,J.,_Kravitz,S.,_Halpern,A.,_Remington,K.,_Beeson,K.,_Tran,B.,_Rogers,Y.-H.,_Friedman,R._and_Venter,J.C. NA 0:1599 Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation.Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation. NA 23-MAR-2006 Gamma_proteobacterium_HTCC2207_1099215844469,_whole_genome_shotgun_sequence. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_gamma_proteobacterium_Q1YQN0_9GAMM.gb NA 90331184 Submitted_(21-MAR-2006)_J_Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA AAPI01000006 NA NA NA purple_photosynthetic_bacteria_and_relatives NA 1599 NA genomic_DNA NA HTCC2207 NA marine_gamma_proteobacterium_HTCC2207 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 314287 Bacteria,_Proteobacteria,_Gammaproteobacteria,_OMG_group,_SAR92_clade Direct_Submission NA AAPI01000006.1 TTAAGCAGGGCTACCTGTCGAGGCTTTTGTGCCAAACATCGTCTCCAGTTCTTCAAGAGACTTGCCTTTAGTTTCTGGCAGTAGCCAGGCAACCAGAATCAGGCCGATTACCGCAAATACAAAGTATGAGAAGAAAGTCAGGGCTGCGCCCAGCACACTAAGCTCAAGCGGGAACAACAGCTGAACCATAAAGCTGACCATGCTATTGATCATGCCGACAAAAGAGATGGCCACGCCGCGCAACTGATTGGGGAATATTTCACTGAACAGAGCCCACATCACCGGGCCCAGCGACATCGCAAACGACGCGACAAACCCCAGTATGCCGACCAGTATCAACAGAGCATTCATTTGAGCGGAGCTCTTGATGAGTTCACTCTCATACTTGCGTGCAGCCTCGATACCTATGGCCTCGGAGACCGCCGTCTTAAATTCCACATCACTCTGATAGACCACGCCTACCAATGAGTTGAGTTGGCTGGCATCAAAGTTGGCATCAGCGGTTTCCATCTGTTGCATTTGCACCACAGACTCTGACTTCAATTCATATGTGGCTTGAGAGAAACCGTAGGTGCAGAGCGCCATGCTAATGGCGATACCAGACAGGCCAACCAGCAGTAATGGTCTGCGGCCCCAGCGATCAATCAGAGCAATCGCAACCAGAGTGAACACAACATTGATTAAGCCCACCAATACAGCTTGAGCGAAGGCGGCATCGGTGCCAATTCCGCTCTGTTCAAAAATGGTTGGCGCATAAAAGAAGATCGCATTGATACCGGTAATCTGTTGTACCACAGCCACAATAATGCCGACTATTAAAGCCAGTCGCATCTTGGGTCCAAAAATACCGCCAATGCGCGCCCACAGTGATTCGGTTACCGTGGCAGAGCTCTGAGTGATCAGCGACATTTCACTATCAACTTGGTCCGCTGGTACCAGCTTAGCGATCACTGCTCGGGCTTCCTGTTCTCTCCCTTTTTGGATCAACCAGCGAGGGCTGTCGGGAATAGCAAACAGGGCGACCAAATATATCAGCGCGGGGACAATTTCAAAGCCCAGCATATAGCGCCAGGCATGCTGATCAACGCCCCAGGCGCTGACCCAGTCTGCACCGGATGAGCTTAGGCCGAGAATGTAGTAGTTGGCGAAATAGGCGGCTGAAAGGCCTATAACAATATTTAACTGATTTACCGATACCAGTTTGCCGCGCCGCTTGGCTGGGGCAATCTCGGCAATGTACATCGGGGCAATAACCAATGAGGTAAAGGCAAATCCACCCAGCGCTCGCGCTGCCAGCAACATATAGTAAGAGGTAGAAAGTGCCGAGGAAACGGCAGATATCAGGTAGAGAACGGCAATAAACATAAGGATCTTTTTGCGGCCAAAAGCATCACTCAAGGGGCCGATCATCAATGTTCCAATGGCACTGGAGAGGGTCGGTGCGGCGACCACAAACCCGGCTTGAATAGGCGTCAGGCCAAATTCAATGGTGACCGGGCCGATAATGCCCGAGACCACTGAGGCGTCGAAGCCAAAAACAAAGCCGCCCAGAGATACAAAAATTGCGCAATAAATTGCGTAGTAGGATCGATATTCCAT > 593 GYMC61_1408 PFAM:_major_facilitator_superfamily_MFS_1;_KEGG:_gka:GK0617_antibiotic_resistance_protein_(antibiotic_efflux_protein) major_facilitator_superfamily_protein YP_003252531.1 11 MGAEQQPLIAEQKEKIWTKDFVLICLANFFVFLGFQMTLPTLPLFVKHLGGNDQLIGVVVGVFTFSALIVRPFAGHALETKGRRFVFLLGLLIFVISVGSYSLISSIFLLFLMRVVQGIGWGFSTTASGTVATDIIPASRRGEGMGYYGLSGNIALAFGPSLGLVLAAMIPFSHLFAICAALGVASVLFAAAITYKKAEAVHGKGANRWDLYEKSALTPSLLLFFLTVTFGGIASFLPLYTAQKQIGGLQLYFLLYALALMVTRTFAGQLYDRKGHRAVFLPGAGLILLAMLLLAWLPGEWALLLAAVLYGFGFGMVQPGLQAWSVERAPAHRKGMANATFFSFFDLGVGVGAMVFGQISHWFGYPSIYLAASGSVLLSMLVYLSVLHKEQSLRSRERKNA Bacillus/Lactobacillus/Streptococcus_group Geobacillus_sp._Y412MC61 Geobacillus_sp._Y412MC61 NC_013411 1436764..1437969 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Brumm,P._and_Mead,D. NA 0:1206 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001794.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4024126Source_DNA_and_bacteria_available_from_David_Mead(dmead@lucigen.com)Contacts:_David_Mead_(dmead@lucigen.com)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Geobacillus_sp._Y412MC61GOLD_Stamp_ID_::_Gi02566Funding_Program_::_DOEM_2005Isolation_Site_::_Obsidian_Hot_Spring_in_Yellowstone_National_ParkIsolation_Country_::_USALatitude_::_44.376262Longitude_::_-110.690383Oxygen_Requirement_::_Facultativecell_Shape_::_Rod-shapedMotility_::_Motilesporulation_::_SporulatingTemperature_Range_::_MesophileGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneEnergy_Source_::_Chemoorganotroph##Metadata-END##COMPLETENESS:_full_length. NA 25-JAN-2012 Geobacillus_sp._Y412MC61_chromosome,_complete_genome. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Geobacillus_sp_C9RX47_GEOSY.gb Geobacillus_Nazina_et_al._2001 261417500 Unpublished NA NC_013411 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1206 NA genomic_DNA NA Y412MC61 NA Geobacillus_sp._Y412MC61 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 544556 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Geobacillus Complete_sequence_of_chromosome_of_Geobacillus_sp._Y412MC61 NA NC_013411.1 ATGGGAGCGGAGCAGCAGCCGCTTATTGCAGAACAAAAAGAAAAAATATGGACGAAAGATTTTGTTTTGATTTGTTTGGCCAATTTTTTTGTGTTTCTTGGGTTTCAAATGACGCTGCCGACCCTTCCGCTGTTTGTCAAGCATTTGGGCGGCAACGATCAGCTGATTGGCGTTGTCGTCGGTGTGTTTACGTTTTCGGCGCTCATCGTCCGTCCGTTCGCCGGCCATGCGCTTGAGACGAAAGGGCGCCGGTTTGTGTTTTTATTGGGGCTTCTCATTTTTGTCATTTCTGTCGGTTCCTACAGCTTGATCTCAAGCATTTTCCTTCTCTTTTTGATGCGGGTCGTCCAAGGAATCGGCTGGGGGTTTTCGACAACCGCTTCCGGGACGGTGGCGACGGACATCATTCCAGCGAGTCGCCGCGGGGAAGGAATGGGCTATTACGGGCTGTCCGGGAATATCGCCTTGGCGTTTGGTCCGTCGCTTGGACTTGTGCTTGCCGCTATGATTCCGTTTAGCCATCTGTTTGCCATTTGTGCGGCGCTTGGAGTCGCTTCGGTGCTGTTTGCCGCCGCGATCACGTATAAAAAAGCGGAAGCCGTGCATGGCAAAGGGGCGAACAGATGGGATTTGTATGAAAAAAGCGCTTTGACCCCGTCGTTGCTGTTGTTTTTCTTGACGGTGACGTTCGGCGGCATCGCCTCATTCTTGCCTCTATATACGGCGCAAAAACAGATCGGCGGCCTGCAACTGTACTTTTTGCTTTACGCGCTTGCCTTGATGGTGACGCGAACGTTCGCTGGCCAGTTGTATGACCGAAAAGGGCATCGAGCCGTCTTTCTCCCTGGTGCGGGGCTTATTTTGCTGGCGATGCTTCTTCTCGCTTGGCTGCCGGGAGAATGGGCGTTGCTTTTGGCGGCGGTGCTGTACGGTTTCGGCTTTGGCATGGTGCAACCGGGGCTGCAGGCGTGGTCCGTCGAGCGGGCGCCTGCCCACCGCAAGGGAATGGCGAACGCGACATTTTTCTCGTTTTTTGATTTAGGGGTCGGCGTCGGGGCGATGGTGTTTGGCCAAATCAGCCATTGGTTCGGCTATCCGAGCATTTATTTAGCTGCTAGCGGTTCGGTGCTCCTTTCGATGCTTGTCTATCTGTCGGTCTTGCATAAAGAACAATCGCTTCGCTCCAGGGAACGAAAAAACGCTTAG > 594 GYMC61_1708 PFAM:_general_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_gtn:GTNG_0806_transporter general_substrate_transporter YP_003252820.1 11 MEKGVSKRVLVASLVGSSIEWFDYFLYGTVAALVFNQLFFPSEDPTVGLLLSYASFALSFFIRPLGGIVFSHIGDKIGRKKTLVMTLSLMGIATAGMGLLPTYETIGIWAPILLILLRLVQGIGLGGEWGGALLLAVEYAPKEKRGLFGSIPQMGVTIGLLLGTFVMSLMTLMPDETFMSWGWRIPFLLSALLVVFGLWVRHGIDETPSFKKVQATGRVANVPLVETLRTQWKEVLIAVGGKVVETAPFYIFGTFIVSYATTNLGFSKTAALNAVTVATIVTTILIPLMGKWSDRYGRKPLYIAGTIGMIIYAFPYFWLLQQKSVALLIIATVIGLGIIWAPITAVLGTMFSEIFPSNVRYTGISLGYQIGAALAGGTAPLIATALLAAYGNSYVPVALYIIFVSLVSLIAVWSVRDRKQQELDKEDGIA Bacillus/Lactobacillus/Streptococcus_group Geobacillus_sp._Y412MC61 Geobacillus_sp._Y412MC61 NC_013411 1731886..1733178 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Brumm,P._and_Mead,D. NA 0:1293 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001794.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4024126Source_DNA_and_bacteria_available_from_David_Mead(dmead@lucigen.com)Contacts:_David_Mead_(dmead@lucigen.com)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Geobacillus_sp._Y412MC61GOLD_Stamp_ID_::_Gi02566Funding_Program_::_DOEM_2005Isolation_Site_::_Obsidian_Hot_Spring_in_Yellowstone_National_ParkIsolation_Country_::_USALatitude_::_44.376262Longitude_::_-110.690383Oxygen_Requirement_::_Facultativecell_Shape_::_Rod-shapedMotility_::_Motilesporulation_::_SporulatingTemperature_Range_::_MesophileGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneEnergy_Source_::_Chemoorganotroph##Metadata-END##COMPLETENESS:_full_length. NA 25-JAN-2012 Geobacillus_sp._Y412MC61_chromosome,_complete_genome. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Geobacillus_sp_C9RYC0_GEOSY.gb Geobacillus_Nazina_et_al._2001 261417500 Unpublished NA NC_013411 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1293 NA genomic_DNA NA Y412MC61 NA Geobacillus_sp._Y412MC61 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 544556 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Geobacillus Complete_sequence_of_chromosome_of_Geobacillus_sp._Y412MC61 NA NC_013411.1 ATGGAAAAAGGGGTATCGAAGCGGGTTTTAGTCGCCAGCCTTGTCGGCAGTTCGATTGAGTGGTTTGACTACTTTCTGTATGGAACGGTCGCAGCGCTTGTGTTCAACCAACTGTTTTTTCCAAGCGAAGACCCGACTGTTGGCTTGCTCTTATCATACGCATCATTTGCCCTTTCGTTTTTCATTCGTCCGTTAGGCGGCATTGTTTTCAGCCATATTGGCGATAAAATCGGGCGGAAGAAGACGCTCGTAATGACATTAAGCCTCATGGGGATCGCGACAGCTGGAATGGGACTGTTGCCGACCTACGAAACCATCGGGATTTGGGCGCCTATCTTGCTCATTTTGCTTCGCCTTGTTCAAGGAATTGGCCTTGGGGGCGAATGGGGCGGGGCGTTGCTGTTGGCAGTGGAATACGCACCGAAAGAAAAGCGCGGGCTGTTCGGCAGCATCCCGCAAATGGGAGTGACAATCGGCCTGCTTCTTGGAACGTTTGTTATGTCGCTTATGACACTCATGCCGGACGAGACATTTATGTCATGGGGATGGCGCATTCCTTTTCTGTTAAGTGCGCTGCTTGTCGTTTTCGGGTTATGGGTGCGTCACGGCATTGATGAAACGCCCTCGTTTAAGAAGGTGCAAGCAACCGGGCGAGTGGCGAACGTACCGCTTGTTGAGACGTTGCGGACCCAATGGAAGGAAGTATTGATTGCAGTCGGCGGAAAAGTGGTTGAAACCGCGCCGTTTTACATTTTTGGAACGTTTATCGTTTCATACGCGACAACGAACTTAGGTTTCTCGAAAACAGCGGCATTGAATGCGGTCACCGTGGCGACAATCGTAACAACGATTCTGATTCCGTTGATGGGCAAGTGGTCGGATCGTTACGGCCGCAAACCACTTTATATAGCAGGAACGATCGGGATGATCATTTATGCCTTCCCATATTTTTGGCTTTTGCAGCAAAAATCAGTCGCCTTGTTGATAATAGCGACCGTCATTGGTCTCGGCATTATTTGGGCGCCGATTACGGCCGTGCTCGGCACGATGTTCTCGGAAATTTTCCCGTCCAATGTTCGATACACAGGGATTTCGCTCGGCTACCAAATTGGCGCTGCATTAGCGGGCGGAACAGCGCCTTTAATCGCTACAGCTTTGCTTGCGGCGTATGGGAACTCTTATGTCCCGGTTGCCTTGTACATTATATTCGTATCGTTGGTTTCGCTGATCGCGGTTTGGTCAGTGCGTGATCGCAAACAACAGGAACTTGATAAGGAAGACGGGATTGCGTAA > 595 GC56T3_2945 PFAM:_major_facilitator_superfamily_MFS_1;_KEGG:_gyc:GYMC61_1408_major_facilitator_superfamily_MFS_1 major_facilitator_superfamily_protein YP_003672463.1 11 MGAEQQPLMAEQKEKIWTKDFVLICLANFFVFLGFQMTLPTLPLFVEHLGGNDQLIGVVVGVFTFSALIVRPFAGHALETKGRRFVFLLGLLIFVISVGSYSLISSIFLLFLMRVVQGIGWGFSTTASGTVATDIIPASRRGEGMGYYGLSGNIALAFGPSLGLVLAAMIPFSHLFAICAALGVASVLFAAAITYKKAEAVHGKGANRWDLYEKSALTPSLLLFFLTVTFGGIASFLPLYTAQKQIGGLQLYFLLYALALMVTRTFAGQLYDRKGHRAVFLPGAGLILLAMLLLAWLPGEWALLLAAVLYGFGFGMVQPGLQAWSVERAPAHRKGMANATFFSFFDLGVGVGAMVFGQISHWFGYPSIYLAASGSVLLSMLVYLSVLHKEQSLRSRERKNA Bacillus/Lactobacillus/Streptococcus_group Geobacillus_sp._C56-T3 Geobacillus_sp._C56-T3 NC_014206 3085030..3086235 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Kourtz,L.,_Brumm,P.,_Mead,D._and_Woyke,T. NA 0:1206 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002050.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4086840Source_DNA_and_organism_available_from_David_Mead(dmead@lucigen.com)Contacts:_David_Mead_(dmead@lucigen.com)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Geobacillus_sp._C56-T3GOLD_Stamp_ID_::_Gi06672Oxygen_Requirement_::_Facultativecell_Shape_::_Rod-shapedMotility_::_Motilesporulation_::_SporulatingTemperature_Range_::_MesophileGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneEnergy_Source_::_Chemoorganotroph##Metadata-END##COMPLETENESS:_full_length. NA 29-AUG-2011 Geobacillus_sp._C56-T3_chromosome,_complete_genome. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Geobacillus_sp_D7D329_GEOSC.gb Geobacillus_Nazina_et_al._2001 297528376 Unpublished NA NC_014206 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1206 NA genomic_DNA NA C56-T3 NA Geobacillus_sp._C56-T3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 691437 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Geobacillus Complete_sequence_of_Geobacillus_sp._C56-T3 NA NC_014206.1 CTAAGCGTTTTTTCGTTCCCTGGAGCGAAGCGATTGTTCTTTATGCAAGACCGACAGATAGACAAGCATCGAAAGGAGCACCGAACCGCTAGCAGCTAAATAAATGCTCGGATAGCCGAACCAATGGCTGATTTGGCCAAACACCATCGCCCCGACGCCGACCCCTAAATCAAAAAACGAGAAAAATGTCGCGTTCGCCATTCCCTTGCGGTGGGCAGGCGCCCGCTCGACGGACCACGCCTGCAGCCCCGGTTGCACCATGCCAAAGCCGAAACCGTACAGCACCGCCGCCAAAAGCAACGCCCATTCTCCCGGCAGCCAAGCGAGAAGAAGCATCGCCAGCAAAATAAGCCCCGCACCAGGGAGAAAGACGGCTCGATGCCCTTTTCGGTCATACAACTGGCCAGCGAACGTTCGCGTCACCATCAAGGCCAGCGCGTAAAGCAAAAAGTACAGCTGCAGGCCGCCGATCTGTTTTTGCGCCGTATATAGAGGCAAGAATGAGGCGATGCCGCCGAACGTCACCGTCAAGAAAAACAACAGCAACGACGGGGTCAAAGCGCTTTTTTCATACAAATCCCATCTGTTCGCCCCTTTGCCATGCACGGCTTCCGCTTTTTTATACGTGATCGCGGCGGCAAACAGCACCGAAGCGACTCCAAGCGCCGCACAAATGGCAAACAGATGGCTAAACGGAATCATAGCGGCAAGCACAAGTCCAAGCGACGGACCAAACGCCAAGGCGATATTCCCGGACAGCCCGTAATAGCCCATTCCTTCCCCGCGGCGGCTCGCTGGAATGATGTCCGTCGCCACCGTTCCGGAAGCGGTTGTCGAAAACCCCCAGCCGATTCCTTGGACGACCCGCATCAAAAAGAGAAGGAAAATGCTTGAGATCAAGCTGTAGGAACCGACAGAAATGACAAAAATGAGAAGCCCCAATAAAAACACAAACCGGCGCCCTTTCGTCTCAAGCGCATGGCCGGCGAACGGACGGACGATGAGCGCCGAAAACGTAAACACACCGACGACAACGCCAATCAGCTGATCGTTGCCGCCCAAATGCTCGACAAACAGCGGAAGGGTCGGCAGCGTCATTTGAAACCCAAGAAACACAAAAAAATTGGCCAAACAAATCAAAACAAAATCTTTCGTCCATATTTTTTCTTTTTGTTCTGCCATAAGCGGCTGCTGCTCCGCTCCCAT > 596 GY4MC1_3456 KEGG:_bld:BLi00639_hypothetical_protein hypothetical_protein YP_003990724.1 11 MADGAKGGLKATITVAMSNYLEAGSIVAGAGGLSLWVEYLKLDDIKVGLLGAVSANGFGSAVGAFIGGILVDRFGRKFIYKYDLLVYMLGVLLITLSFNFPMLLLGYIITGLAVGAGIPAAWTYISEEAPANERAARVGWGQFARSVGPVISLLLSVLLAPLGILGSRIIFAQLFVVAAITWIMQQQIRESMIWEEERQKQAELKAKYQISKSSTKELFTIKANLHAMILLIGIYCFWNLVAGVMGYFMPYIYEKVGGLTAAQANLLQAFLWILTVASTYFVFIKLGDKVNRRVLYGLGALMEIVAWIILSFAGMGKIQLMLFVILWGTAAGFGAQAFYALWAGELFHTKYRAKAQGFLFSVARIAVGLISLVVPTMITQLGFKFAGTVMIGFLLIAAIIGVAMAPETRGKTLKEIQQERYGTNY Bacillus/Lactobacillus/Streptococcus_group Geobacillus_sp._Y4.1MC1 Geobacillus_sp._Y4.1MC1 NC_014650 3444463..3445740 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Zhang,X.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Land,M.,_Hauser,L.,_Jeffries,C.,_Kyrpides,N.,_Ivanova,N.,_Ovchinnikova,G.,_Brumm,P.,_Mead,D._and_Woyke,T. NA 0:1278 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002293.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4086101Source_DNA_and_organism_available_from_David_Mead(dmead@lucigen.com)Contacts:_David_Mead_(dmead@lucigen.com)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Geobacillus_sp._Y4.1MC1collection_date_::_Missinglat_lon_::_44.376262_-110.690383depth_::_Missingalt_elev_::_Missingcountry_::_USAenvironment_::_Missingnum_replicons_::_2ref_biomaterial_::_Missingbiotic_relationship_::_Free_livingtrophic_level_::_Chemoorganotrophrel_to_oxygen_::_Facultativeisol_growth_condt_::_Missingsequencing_meth_::_WGSassembly_::_Newbler_v._2.3_(pre-release)finishing_strategy_::_FinishedGOLD_Stamp_ID_::_Gi03944Funding_Program_::_DOEM_2004Isolation_Site_::_Bath_Hot_Spring_in_Yellowstone_National_Parkcell_Shape_::_Rod-shapedMotility_::_Motilesporulation_::_SporulatingTemperature_Range_::_ThermophileGram_Staining_::_Gram+Diseases_::_None##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_FinishedAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_30xSequencing_Technology_::_454/Illumina##Genome-Assembly-Data-END##COMPLETENESS:_full_length. NA 31-AUG-2011 Geobacillus_sp._Y4.1MC1_chromosome,_complete_genome. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Geobacillus_sp_E3IGB5_GEOS0.gb Geobacillus_Nazina_et_al._2001 312109151 Unpublished NA NC_014650 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1278 NA genomic_DNA NA Y4.1MC1 NA Geobacillus_sp._Y4.1MC1 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 581103 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Geobacillus Complete_sequence_of_chromosome_of_Geobacillus_sp._Y4.1MC1 NA NC_014650.1 TTAGTAGTTAGTACCATATCTTTCTTGTTGAATTTCTTTTAATGTTTTCCCCCTCGTCTCCGGTGCCATGGCAACTCCAATGATCGCAGCAATAAGCAGGAATCCAATCATAACCGTTCCAGCAAATTTAAATCCTAATTGTGTAATCATGGTTGGAACCACTAGTGAAATTAATCCAACGGCTATACGAGCAACACTGAAGAGAAATCCTTGGGCTTTAGCACGATATTTCGTATGGAAAAGCTCGCCGGCCCATAGCGCATAGAATGCTTGAGCTCCAAAACCTGCGGCAGTACCCCATAAGATAACAAAGAGCATCAATTGAATTTTACCCATGCCGGCAAATGAGAGAATGATCCAAGCAACAATTTCCATTAAGGCACCAAGTCCATAAAGTACACGGCGATTTACTTTATCACCTAACTTAATAAATACAAAATATGTTGAAGCCACCGTTAAAATCCATAAGAAAGCTTGTAACAGATTAGCTTGTGCTGCAGTAAGTCCGCCTACTTTTTCGTATATATATGGCATGAAATATCCCATAACACCGGCGACTAAATTCCAGAAGCAATATATTCCTATCAATAAAATCATCGCATGCAGATTTGCTTTTATAGTAAATAATTCTTTAGTAGAACTTTTGGAAATTTGATATTTAGCTTTAAGTTCAGCTTGTTTTTGCCTTTCCTCTTCCCATATCATAGATTCACGAATTTGTTGTTGCATAATCCAGGTAATGGCTGCAACGACAAACAATTGGGCAAAAATGATCCTACTTCCTAAAATCCCTAATGGAGCTAATAATACAGAAAGTAACAAGGAAATGACAGGACCTACCGACCGAGCAAATTGTCCCCATCCCACACGTGCTGCTCGTTCATTTGCAGGAGCCTCTTCTGATATATATGTCCAGGCAGCTGGAATTCCCGCACCTACTGCTAAGCCTGTTATAATATATCCTAATAATAACATAGGGAAGTTAAAAGAAAGCGTTATCAATAAAACACCAAGCATATAAACAAGAAGATCATACTTATAAATAAATTTTCTTCCAAACCTGTCAACTAAAATCCCGCCAATAAAAGCACCAACCGCTGATCCGAAACCATTTGCACTAACCGCACCAAGTAAACCGACTTTAATATCATCTAACTTTAAATACTCTACCCATAGTGAAAGCCCCCCTGCGCCTGCAACTATGGAACCGGCTTCTAAGTAGTTTGACATAGCTACAGTAATTGTCGCTTTTAATCCACCTTTCGCACCATCCGCCAT > 597 Geob_0225 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bpt:Bpet1394_benzoate_transport_protein major_facilitator_superfamily_protein YP_002535698.1 11 MTTNAQTKPSVSFTQWCDSLSFNRFHAMVMALAALILVFDGYDAQIIAYVMPQLVKEWHLTPVEAGSMASYGFIGLMIGAAGFGTFADRLGRKKGVMIALVVFSVFSGAAYWAPNFKVFCLLRFLAGIGMGGAMPLTITLVTEFAPAKARAKAVSAMFAGFTLGWGVAALVAMVGIPALGWRMVLLFGFLPVLILPLLQKALPESVRFLASKGRHEEAILEIQRMEKAAGLPPAAWTKESFQTGPVEPGSSLTQLFSPGFSFMTPLIWATYFLNLLVVYGLATWLPSLLVKAGFSLVKSYSFGMVQAIGASLGGFLLGWMMDRFGRKSALIFAYMAGGVVVALFGTVSSNTALYIIGAATGVFVIGAQIAQHVVTGELYPTSIRSTGVGYALTAGRLGSIAGPLLGGALQMAGVTFSQYFLIFAVPSFLCAGLVYLYRVNVKDEGLETVHERLVSVEE delta_subgroup Geobacter_sp._FRC-32 Geobacter_sp._FRC-32 NC_011979 272633..274009 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Saunders,E.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ovchinnikova,G.,_Kostka,J._and_Richardson,P. NA 0:1377 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001390.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4001414Source_DNA_and_bacteria_available_from_Joel_Kostka(jkostka@ocean.fsu.edu)Contacts:_Joel_Kostka_(jkostka@ocean.fsu.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)Meta_information:_Organism_display_name:_Geobacter_sp_FRC-32_Culture_Collection_IDs:_GOLD_ID:_Gi00944_http://genomesonline.org/GOLD_CARDS/Gi00944.html_Sequencing_Platforms:_Sanger_Sequencing_Coverage:_10x_Sequencing_Status:_Draft_Phenotypes:_Iron_reducer,_Uranium_reducer_Diseases:_None_Habitat:_Fresh_water,_Soil,_Sediment_Oxygen_Requirement:_Anaerobe_Cell_Shape:_Rod-shaped_Motility:_Motile_Sporulation:_Nonsporulating_Energy_Source:_Chemolithotroph_Temperature_Range:_Mesophile_Biotic_Relationship:_Free_living_Isolation:_Uranium-contaminated_subsurface_at_US.COMPLETENESS:_full_length. NA 23-JAN-2012 Geobacter_sp._FRC-32_chromosome,_complete_genome. NA not_"Geobacteraceae"_Lonergan_et_al._1996 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Geobacter_sp_B9M939_GEOSF.gb Trichlorobacter_De_Wever_et_al._2001 222053117 Unpublished NA NC_011979 NA NA Desulfuromonas_group purple_photosynthetic_bacteria_and_relatives NA 1377 NA genomic_DNA NA FRC-32 NA Geobacter_sp._FRC-32 NA forward NA NA NA NA NA not_Thiobacteria_Cavalier-Smith_2002 NA NA NA NA prokaryotes NA 316067 Bacteria,_Proteobacteria,_Deltaproteobacteria,_Desulfuromonadales,_Geobacteraceae,_Geobacter Complete_sequence_of_Geobacter_sp._FRC-32 NA NC_011979.1 ATGACAACAAACGCGCAGACAAAACCCTCCGTAAGCTTTACCCAATGGTGCGACAGCTTGTCGTTCAACAGGTTTCACGCCATGGTCATGGCACTCGCCGCCCTGATCCTGGTCTTCGACGGTTACGACGCCCAGATCATCGCCTATGTCATGCCGCAACTGGTCAAGGAATGGCACCTGACCCCGGTGGAGGCTGGTTCCATGGCCTCCTACGGTTTCATCGGTCTCATGATCGGCGCGGCCGGCTTCGGCACCTTCGCCGACAGGCTTGGCCGCAAGAAGGGAGTGATGATCGCCTTGGTCGTATTCTCCGTCTTCAGCGGGGCGGCTTACTGGGCGCCCAATTTCAAGGTGTTCTGTCTCCTTCGTTTTCTCGCCGGCATCGGCATGGGGGGCGCGATGCCCCTGACCATTACGCTGGTGACGGAATTCGCCCCTGCCAAGGCACGGGCCAAGGCGGTAAGCGCCATGTTTGCCGGATTTACCCTGGGATGGGGCGTTGCGGCACTGGTGGCCATGGTCGGCATACCTGCCTTGGGATGGCGGATGGTGCTTCTTTTCGGTTTTCTGCCGGTGCTTATTCTTCCCCTTCTGCAGAAGGCCCTGCCGGAGTCGGTGCGCTTCCTGGCATCGAAAGGGCGTCACGAGGAGGCGATACTTGAAATACAGCGGATGGAAAAAGCCGCAGGACTGCCACCGGCTGCGTGGACCAAGGAGTCGTTTCAAACCGGACCGGTGGAGCCAGGCAGCAGCCTGACCCAGCTTTTCTCTCCCGGATTTTCATTCATGACACCGCTCATCTGGGCAACTTACTTCCTGAACCTCCTGGTGGTCTACGGGCTGGCTACCTGGCTCCCATCGCTTCTCGTCAAGGCAGGGTTTTCCCTGGTCAAGAGTTACAGTTTCGGCATGGTCCAGGCAATAGGCGCTTCCCTCGGCGGCTTTCTTCTCGGCTGGATGATGGACCGATTCGGCCGGAAGAGCGCTCTGATCTTTGCCTACATGGCCGGAGGGGTTGTCGTAGCCCTGTTCGGCACAGTATCGAGCAATACGGCCTTGTATATCATCGGCGCAGCAACGGGTGTCTTCGTCATCGGAGCGCAAATAGCCCAACATGTGGTGACCGGCGAACTCTATCCGACCAGCATCCGTTCCACCGGGGTTGGCTATGCCCTCACCGCGGGCCGTCTCGGTTCGATTGCAGGCCCCTTGCTGGGCGGAGCGCTCCAGATGGCCGGCGTTACCTTCAGCCAATACTTCCTGATCTTCGCGGTTCCCAGCTTCCTGTGCGCCGGACTGGTCTATTTGTATCGGGTCAATGTGAAAGACGAAGGACTTGAAACAGTCCATGAAAGACTGGTATCCGTTGAGGAGTAG > 598 NA NA phosphate_permease ADV03938.1 NA TSEFATTKWRGAMMAAVFAMQGIGQLVAALVMMFLTLGFKSSLEQAADTKSCTGDCQIAVDKMWRTLVGFGAVPACIALYCRLTIPETPRYTFDVARDVEQADEDVKAYINGRSEGNTDEVTRAQNLQSAKTNLEVPKASWRDFFQHYSKWKNASLLLGTAGSWFCLDVAFYGLSLNNGTILKVIGYSTKDATNVYEFLHNTAVGNIIIVLAGAVPGYWVSVATIDTLGRKTIQLGGFIILTILFIV Sordariomycetes Gibberella_zeae Gibberella_zeae_(anamorph:_Fusarium_graminearum) HQ687692 1..10 Schmale,D.,_Wood-Jones,A.,_Cowger,C.,_Bergstrom,G._and_Arrellano,C. NA 0:10 NA NA 12-JAN-2011 Gibberella_zeae_isolate_15DON8_phosphate_permease_(PHO)_gene,_partial_cds. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Gibberella_zeae_E7EFD8_GIBZA.gb Gibberella 317141287 Unpublished fungi HQ687692 phosphate_permease NA pyrenomycetes sac_fungi NA 10 NA genomic_DNA NA NA NA Gibberella_zeae NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5518 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Gibberella Trichothecene_Genotypes_of_Gibberella_zeae_from_Winter_Wheat_Fields_in_the_Eastern_United_States NA HQ687692.1 TTACTTCAGA > 599 NA NA phosphate_permease AAG43639.1 NA WRVIMGVGIGGDYPLSSIITSEFATTKWRGAMMAAVFAMQGIGQLVAALVMMFLTLGFKSSLEQAADTKSCTGDCQIAVDKMWRTLVGFGAVPACIALYYRLTIPETPRYTFDVARDVEQADEDVKAYINGRSEGNTDEVTRAQNLQSAK Sordariomycetes Gibberella_zeae Gibberella_zeae_(anamorph:_Fusarium_graminearum) AF212496 1..67 ODonnell,K.,_Kistler,H.C.,_Tacke,B.K._and_Casper,H.H. NA 0:67 NA NA 13-DEC-2007 Gibberella_zeae_strain_NRRL_28336_phosphate_permease_gene,_partial_cds. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Gibberella_zeae_Q9HDN4_GIBZA.gb Gibberella 12003560 Proc._Natl._Acad._Sci._U.S.A._97_(14),_7905-7910_(2000) fungi AF212496 phosphate_permease NA pyrenomycetes sac_fungi 10869425 67 NA genomic_DNA NA NRRL_28336 NA Gibberella_zeae NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5518 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Gibberella Gene_genealogies_reveal_global_phylogeographic_structure_and_reproductive_isolation_among_lineages_of_Fusarium_graminearum,_the_fungus_causing_wheat_scab NA AF212496.1 TCTGGCGTGTTATCATGGGCGTGGGTATCGGTGGTGACTATCCATTGTCTTCCATCATTACTTCAGA > 600 NA NA phosphate_transporter ADG27905.1 NA MQGFGILGSAIVALVVLAAFRSAIIADVSAVDYCWRIVLGCGAIPGIAALYFRLTIPETPRYTMDVEHDVNKATSDVANYLQKTDTTDENDGPGNHVGVPKASWSDFTSYFGKWKNGKVLLGTSMSWFALDIAFYGIGLNNGIILSAIGYADTHDADFNLRAYNSLKNMALGNIIITIMGTVPGYWVTVAFVDKWGRKPIQIMGFVVLTVLFIVMGAAFNPLKEHSIPAFIVLFTLLQFFQNFGPNTTTFIVPGEVFPTRYRSTGHGISAASGKLGAIVAQVGF glomeromycetes Rhizophagus_irregularis Rhizophagus_irregularis GU585512 NA Sokolski,S.,_Dalpe,Y._and_Piche,Y. NA <0:>852 NA NA 21-JUL-2011 Glomus_irregulare_strain_DAOM_240159_phosphate_transporter_gene,_partial_cds. NA Glomeraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Glomus_irregulare_D7PIU7_9GLOM.gb Rhizophagus_P.A._Dang._1896 295687365 Appl._Environ._Microbiol._77_(5),_1888-1891_(2011) fungi GU585512 phosphate_transporter NA Glomerales Glomeromycota 21193669 852 NA genomic_DNA NA DAOM_240159 NA Rhizophagus_irregularis_(Blaszk.,_Wubet,_Renker_&_Buscot)_C._Walker_&_A._Schuessler_2010 NA forward NA NA NA NA NA NA NA NA NA NA eukaryotes NA 588596 Eukaryota,_Fungi,_Glomeromycota,_Glomeromycetes,_Glomerales,_Glomeraceae,_Rhizophagus Phosphate_transporter_genes_as_reliable_gene_markers_for_the_identification_and_discrimination_of_arbuscular_mycorrhizal_fungi_in_the_genus_Glomus NA GU585512.1 ATGCAAGGATTTGGAATTTTAGGCTCTGCTATTGTAGCACTTGTCGTTTTGGCAGCTTTTAGAAGTGCAATTATCGCCGATGTTTCTGCTGTTGATTATTGTTGGCGTATAGTGCTCGGTTGTGGTGCTATTCCCGGTATTGCGGCTCTATACTTCCGTCTCACAATTCCAGAAACCCCACGATATACTATGGACGTAGAACACGATGTCAACAAAGCAACTTCGGACGTCGCCAACTATTTGCAAAAAACTGACACAACAGATGAAAATGATGGACCAGGCAATCATGTCGGTGTACCAAAAGCAAGCTGGTCGGATTTCACAAGTTATTTTGGAAAATGGAAAAATGGAAAAGTTTTACTAGGAACCTCTATGTCATGGTTCGCGTTGGATATTGCTTTTTATGGAATCGGTCTTAATAACGGAATTATTTTGAGTGCTATTGGCTACGCTGACACACATGATGCAGATTTTAATCTAAGGGCTTATAATTCACTCAAAAATATGGCTCTTGGTAATATTATTATCACTATTATGGGAACCGTTCCTGGTTATTGGGTTACTGTAGCTTTTGTTGATAAATGGGGCAGAAAACCTATTCAAATAATGGGTTTCGTTGTCCTCACTGTACTTTTTATTGTCATGGGTGCTGCCTTTAATCCACTCAAGGAACATTCTATTCCAGCCTTTATCGTCTTATTCACATTGTTGCAGTTCTTCCAAAATTTTGGTCCCAACACAACAACATTCATCGTTCCAGGGGAAGTTTTCCCAACACGTTACAGATCAACTGGTCATGGTATATCAGCTGCCTCCGGAAAACTTGGAGCTATTGTTGCCCAAGTTGGTTTC > 601 NA NA phosphate_transporter ADG27908.1 NA MQGFGILGSAIVALAVLAGFRNEIIKDVSAVDYCWRIVLGCGAVPGLAALYFRLTIPETPRYTMDVEHDVNKATSDITSYLQKNDVNEDDTNTGNHVGVPKASWSDFVSYFGKWSNGKVLLGTSMSWFALDIAFYGIGLNNGIILSAIGYSETHEADLNLRAYNSLKNMAVGNIIITIMGTVPGYWVTVALVDSWGRKPIQLMGFGVLTALFIVMGAAFNPLKEHSIPAFIILFTLLQFFQNFGPNTTTFIVPGEVFPTRYRSTGHGISAASGKLGAIVAQVGF glomeromycetes Glomus_sp._DAOM_211637 Glomus_sp._DAOM_211637 GU585515 NA Sokolski,S.,_Dalpe,Y._and_Piche,Y. NA <0:>852 NA NA 21-JUL-2011 Glomus_sp._DAOM_211637_phosphate_transporter_gene,_partial_cds. NA Glomeraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Glomus_sp_D7PIV0_9GLOM.gb Sclerocystis 295687371 Appl._Environ._Microbiol._77_(5),_1888-1891_(2011) fungi GU585515 phosphate_transporter NA Glomerales Glomeromycota 21193669 852 NA genomic_DNA NA DAOM_211637 NA Glomus_sp._DAOM_211637 NA forward NA NA NA NA NA NA NA NA NA NA eukaryotes NA 758869 Eukaryota,_Fungi,_Glomeromycota,_Glomeromycetes,_Glomerales,_Glomeraceae,_Glomus Phosphate_transporter_genes_as_reliable_gene_markers_for_the_identification_and_discrimination_of_arbuscular_mycorrhizal_fungi_in_the_genus_Glomus NA GU585515.1 ATGCAAGGATTTGGAATTTTGGGCTCTGCTATTGTAGCACTTGCCGTATTGGCAGGTTTTAGGAATGAAATTATCAAAGACGTTTCTGCAGTTGATTACTGTTGGCGTATAGTTCTCGGCTGTGGTGCTGTGCCCGGGTTAGCGGCTCTCTACTTCCGTCTCACAATTCCAGAAACTCCACGATATACTATGGACGTAGAACATGATGTTAACAAAGCCACTAGTGATATTACCTCTTATTTGCAAAAAAATGACGTAAATGAAGATGATACAAATACAGGCAATCATGTCGGTGTACCAAAAGCAAGCTGGTCGGATTTCGTAAGTTATTTCGGAAAATGGAGCAATGGAAAAGTTTTGTTAGGAACTTCTATGTCATGGTTCGCATTGGATATTGCTTTTTATGGAATTGGTCTTAATAACGGAATCATTTTGAGCGCCATTGGCTACTCTGAGACCCACGAGGCTGACCTTAATTTAAGAGCTTATAATTCACTCAAAAATATGGCTGTCGGTAATATTATAATTACCATCATGGGTACCGTTCCTGGTTATTGGGTTACCGTAGCACTTGTAGATAGTTGGGGTAGAAAACCTATTCAATTAATGGGTTTCGGTGTTCTCACTGCATTATTTATTGTCATGGGAGCTGCCTTTAATCCACTCAAAGAACATTCAATTCCGGCTTTTATCATCTTATTCACATTGTTACAGTTCTTCCAAAATTTCGGCCCAAACACAACAACATTCATTGTACCAGGAGAAGTTTTTCCAACACGTTACAGATCAACTGGTCATGGTATATCAGCTGCATCAGGAAAACTTGGAGCTATTGTTGCCCAAGTTGGTTTC > 602 GDI_3121 NA sugar_transporter YP_001603352.1 11 MLVVVALGITWVLDGLEVTVVGSVAPVLQRGDTLGLSPAGIGGAASAYVAGAVIGALLFGWASDRLGRRQIFTVTLGLYILGVGMTALSWNLTSFALFRFVTGMGIGGEYSAINSAIDELMPARLRGRVDLIVNGTFWAGAALGAGASMLLLRGSIMPVTIGWRAVFAIGALLGLTVIALRRWIPESPRWLMTHRRIDEATRIVTMIETRHCGVQRGSEVLDTIQIYPAGTFGLPQALQVIIGPYRGRAAYVLVLMVAQAFLYNAVFFTYGLVLTQYDHVPDSTVGMYILPLAIGNLLGPLVLGRWFDTVGRRRMIGLTYLISGLMMAGVAVLFAKGMLDAWLQTAAWVAIFFFASAAASAAYLTASEIFPLEIRSLTIALFYALGTLFGGVASPFLFGWLIGQGSLLALAAGYAAAAILMIIAAGVAMRWGVDAECQSLERIAPPLSSML alpha_subgroup Gluconacetobacter_diazotrophicus_PAl_5 Gluconacetobacter_diazotrophicus_PAl_5 NC_010125 3210367..3211722 Bertalan,M.,_Albano,R.,_de_Padua,V.,_Rouws,L.,_Rojas,C.,_Hemerly,A.,_Teixeira,K.,_Schwab,S.,_Araujo,J.,_Oliveira,A.,_Franca,L.,_Magalhaes,V.,_Alqueres,S.,_Cardoso,A.,_Almeida,W.,_Loureiro,M.M.,_Nogueira,E.,_Cidade,D.,_Oliveira,D.,_Simao,T.,_Macedo,J.,_Valadao,A.,_Dreschsel,M.,_Freitas,F.,_Vidal,M.,_Guedes,H.,_Rodrigues,E.,_Meneses,C.,_Brioso,P.,_Pozzer,L.,_Figueiredo,D.,_Montano,H.,_Junior,J.,_de_Souza_Filho,G.,_Martin_Quintana_Flores,V.,_Ferreira,B.,_Branco,A.,_Gonzalez,P.,_Guillobel,H.,_Lemos,M.,_Seibel,L.,_Macedo,J.,_Alves-Ferreira,M.,_Sachetto-Martins,G.,_Coelho,A.,_Santos,E.,_Amaral,G.,_Neves,A.,_Pacheco,A.B.,_Carvalho,D.,_Lery,L.,_Bisch,P.,_Rossle,S.C.,_Urmenyi,T.,_Rael_Pereira,A.,_Silva,R.,_Rondinelli,E.,_von_Kruger,W.,_Martins,O.,_Baldani,J.I._and_Ferreira,P.C. NA 0:1356 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM889285.COMPLETENESS:_full_length. NA 21-JAN-2012 Gluconacetobacter_diazotrophicus_PAl_5_chromosome,_complete_genome. NA alpha-1_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Gluconacetobacter_diazotrophicus_A9HSD8_GLUDA.gb Gluconoacetobacter 162145846 BMC_Genomics_10,_450_(2009) NA NC_010125 NA NA Rhodospirillales_Pfennig_and_Truper_1971 purple_photosynthetic_bacteria_and_relatives 19775431 1356 NA genomic_DNA NA PAl_5 NA Gluconacetobacter_diazotrophicus_(Gillis_et_al._1989)_Yamada_et_al._1998 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 272568 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodospirillales,_Acetobacteraceae,_Gluconacetobacter Complete_genome_sequence_of_the_sugarcane_nitrogen-fixing_endophyte_Gluconacetobacter_diazotrophicus_Pal5 NA NC_010125.1 ATGCTGGTGGTCGTGGCGCTGGGCATCACCTGGGTTCTGGACGGGCTGGAGGTCACGGTCGTCGGCTCGGTGGCCCCGGTCCTGCAGCGGGGGGACACGCTGGGCCTCTCGCCCGCAGGTATCGGCGGCGCGGCCTCGGCCTATGTCGCGGGCGCCGTCATCGGCGCGCTGCTGTTCGGCTGGGCGAGCGACCGGCTGGGCCGGCGGCAGATCTTCACCGTCACGCTGGGCCTGTACATCCTGGGCGTGGGCATGACCGCGCTGTCGTGGAACCTGACCAGCTTCGCGCTGTTCCGCTTCGTGACCGGCATGGGCATCGGCGGCGAGTATTCCGCCATCAATTCCGCCATCGACGAACTGATGCCCGCCCGGCTGCGCGGCCGGGTGGACCTGATCGTCAACGGCACGTTCTGGGCCGGGGCCGCGCTGGGCGCCGGGGCGTCGATGCTGCTGCTGCGCGGCAGCATCATGCCGGTCACCATAGGGTGGCGGGCCGTCTTCGCCATCGGCGCCCTGCTGGGCCTGACGGTCATCGCCCTGCGCCGCTGGATTCCGGAAAGCCCGCGCTGGCTGATGACCCACCGCCGGATCGACGAAGCGACCCGCATCGTCACCATGATCGAAACCCGGCATTGCGGCGTGCAGCGGGGTTCGGAAGTGCTGGACACCATCCAGATCTATCCCGCCGGCACGTTCGGCCTGCCGCAGGCTTTGCAGGTCATCATCGGGCCCTATCGCGGGCGGGCCGCCTACGTGCTGGTGCTGATGGTGGCGCAGGCCTTCCTGTACAATGCCGTCTTCTTCACCTACGGGCTGGTCCTGACCCAGTACGACCATGTGCCCGACAGCACGGTGGGGATGTATATCCTGCCGCTGGCGATCGGCAACCTGCTGGGCCCGCTGGTCCTGGGGCGCTGGTTCGACACGGTGGGGCGACGGCGCATGATCGGCCTGACCTACCTTATCTCCGGGCTGATGATGGCCGGCGTGGCGGTGCTGTTCGCCAAGGGCATGCTGGATGCGTGGCTGCAGACGGCGGCGTGGGTCGCGATCTTCTTCTTCGCCTCGGCCGCCGCCAGCGCGGCCTACCTGACGGCCAGCGAGATCTTCCCGCTGGAAATCCGTTCGCTGACCATCGCGCTGTTCTATGCCCTGGGCACGCTGTTCGGCGGCGTGGCGTCGCCGTTCCTGTTCGGATGGCTGATCGGCCAGGGCAGCCTGCTGGCGCTCGCGGCGGGATATGCCGCGGCGGCGATCCTGATGATCATCGCGGCCGGCGTCGCCATGCGCTGGGGGGTCGATGCGGAATGCCAGTCGCTGGAACGGATCGCCCCGCCCCTGTCCAGCATGCTGTAA > 603 GXY_00963 COG0477_Permeases_of_the_major_facilitator_superfamily sugar_transporter EFG85795.1 11 MQNYSPQSPAAPSAQPEPIPDLSDLEISPNAQKTLWLAAIVAAICGGLYGYDTGIVSGALLLITRDFHLSSFYQEMVASAILAGAVMGSFITGWMSERFGRRNSVMIVTAVFVTGALACAWAPDVYALIAARVFLGLAVGGSTQVVPMYISELAPAKKRGHMVTMFNIAIGVGIFAANVIGFAARDAWGWRPMVAIAAIPAAVVFVSMFFLPKSPRWAAENESLDSAIEQLRRIRTTRREIRKEIKRIQVTANDDAAAHESGWRGLMQSWVRPALVAALGVAFFTQAGGLEMMIYYAPTFLSDAGFGSSAALLASIGISIVYLVMTVLGSNIVDRIGRRRLVLVMGPGSVLSLIGLGIMFLIHPDKGSIGSWMIIIFMLLFMVFNAGGIQVVGWLLGAEMFPLSMRGNATSLHSAMLWGSDLLVTSTALTLVSTITLGGTMWFYAGVNLASVLFIYFFVPETRGASLEDIEDALREGRFRPTRESSAIVAEED alpha_subgroup Gluconacetobacter_hansenii_ATCC_23769 Gluconacetobacter_hansenii_ATCC_23769 ADTV01000003 52552..54033 Iyer,P.R.,_Geib,S.M.,_Catchmark,J.,_Kao,T.H._and_Tien,M. NA 0:1482 Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation.##Genome-Assembly-Data-START##Genome_Coverage_::_22xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 11-MAY-2010 Gluconacetobacter_hansenii_ATCC_23769_GXY0003,_whole_genome_shotgun_sequence. NA alpha-1_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Gluconacetobacter_hansenii_D5QAS2_GLUHA.gb Gluconoacetobacter 295979016 J._Bacteriol._192_(16),_4256-4257_(2010) NA ADTV01000003 NA NA Rhodospirillales_Pfennig_and_Truper_1971 purple_photosynthetic_bacteria_and_relatives 20543071 1482 NA genomic_DNA NA ATCC_23769 NA Gluconacetobacter_hansenii_corrig._(Gossele_et_al._1983)_Yamada_et_al._1998_emend._Lisdiyanti_et_al._2006 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 714995 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodospirillales,_Acetobacteraceae,_Gluconacetobacter Genome_sequence_of_a_cellulose-producing_bacterium,_Gluconacetobacter_hansenii_ATCC_23769 NA ADTV01000003.1 ATGCAGAATTATTCCCCACAATCCCCGGCCGCCCCCTCGGCGCAGCCTGAACCCATTCCCGATCTGTCCGACCTCGAAATCTCGCCCAACGCACAAAAGACGCTCTGGCTCGCAGCCATCGTGGCCGCCATCTGCGGTGGCCTCTATGGCTACGATACCGGTATCGTCTCTGGCGCATTGCTGCTGATTACGCGCGATTTTCACCTCAGCAGTTTTTATCAGGAAATGGTGGCCTCCGCGATCCTGGCGGGGGCGGTCATGGGGTCGTTCATCACCGGGTGGATGTCTGAACGCTTTGGACGGCGTAACTCCGTCATGATCGTCACCGCGGTGTTCGTCACTGGCGCGCTGGCCTGTGCATGGGCACCTGATGTCTATGCCCTGATCGCCGCACGTGTGTTCCTTGGGCTGGCGGTGGGGGGCTCGACGCAGGTCGTGCCGATGTACATCTCTGAACTGGCACCGGCGAAAAAGCGCGGGCACATGGTCACGATGTTCAACATCGCCATCGGTGTCGGTATTTTTGCCGCCAATGTCATCGGCTTTGCCGCGCGTGATGCATGGGGATGGCGCCCGATGGTGGCGATCGCGGCCATCCCGGCGGCGGTTGTCTTTGTTTCCATGTTCTTCCTGCCCAAGAGCCCGCGTTGGGCGGCGGAGAACGAAAGCCTTGATTCCGCCATCGAGCAGTTGCGCCGCATCCGCACCACCCGGCGCGAGATCCGCAAGGAGATCAAGCGTATCCAGGTGACTGCAAATGACGATGCGGCCGCTCATGAGAGTGGCTGGCGTGGGTTGATGCAGTCATGGGTGCGACCCGCGCTGGTTGCCGCGCTTGGTGTTGCGTTCTTTACGCAGGCTGGCGGGCTGGAGATGATGATCTATTACGCGCCGACCTTCCTGTCGGATGCGGGGTTTGGCAGTTCGGCCGCCCTGCTGGCCAGTATCGGCATCTCCATCGTCTATCTGGTCATGACGGTACTGGGGTCGAATATCGTGGATCGTATCGGTCGCCGTCGCCTTGTGCTGGTGATGGGGCCGGGTTCGGTCCTCAGCCTGATCGGGCTGGGCATCATGTTCCTGATCCACCCGGACAAAGGCAGCATCGGAAGCTGGATGATCATCATCTTCATGCTGCTGTTCATGGTGTTCAACGCGGGCGGCATTCAGGTCGTCGGCTGGCTGCTCGGTGCGGAGATGTTCCCCCTGTCGATGCGTGGTAATGCCACCAGCCTGCATTCCGCCATGCTGTGGGGCAGTGACCTGCTTGTAACCAGCACGGCGCTGACGCTGGTGTCCACCATCACGCTGGGTGGGACGATGTGGTTCTATGCCGGGGTTAATCTGGCGTCGGTGCTGTTCATCTATTTCTTCGTGCCCGAAACACGTGGCGCCTCGCTGGAGGATATCGAGGATGCATTGCGCGAGGGACGTTTCCGCCCCACGCGTGAATCCTCCGCCATCGTCGCGGAAGAGGACTGA > 604 GXY_07615 COG0477_Permeases_of_the_major_facilitator_superfamily major_facilitator_superfamily_transporter EFG84639.1 11 MNADDGSVAECIARLESPSSDGWRHRVRLVVGMATFLDSFDIFSIAFVMPVMAPLWHLSPVQVGMVFSIGFLGQMIGSVVFGFFSERYGRIRALSVAVFIFAVATLLSALVQSAAQFEALRFIQGLGLGGHVPIAATYITEISRQAGRGRFVLLYESIFAVGNVLAAVICRIFLAAFGWQSIFWLSGVAGVLLLPFVMRLPESPRWLCARGQARYALDLVRGLETGKPQGPGPLPAPVHGGAAGCLHVPLFLPRDSLRLLLLTVPLWFALGLLNYGLATWLPIIYTRQFRLPVSDALDYSIIRSVIIFIGTIACSLAIDAIGRRKIVMGGFLCAALPLVALALMGSAMTAGWVFFMTLITSFFVAVLMLAVYLYTPELCPAQARGAFTGFNAAVLRFASMIAPGAVGLGMSHGSIAGVFMLFAAVGLMVSGISFVMARETRHLVM alpha_subgroup Gluconacetobacter_hansenii_ATCC_23769 Gluconacetobacter_hansenii_ATCC_23769 ADTV01000030 100409..101746 Iyer,P.R.,_Geib,S.M.,_Catchmark,J.,_Kao,T.H._and_Tien,M. NA 0:1338 Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation.##Genome-Assembly-Data-START##Genome_Coverage_::_22xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 11-MAY-2010 Gluconacetobacter_hansenii_ATCC_23769_GXY0030,_whole_genome_shotgun_sequence. NA alpha-1_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Gluconacetobacter_hansenii_D5QEF8_GLUHA.gb Gluconoacetobacter 295977800 J._Bacteriol._192_(16),_4256-4257_(2010) NA ADTV01000030 NA NA Rhodospirillales_Pfennig_and_Truper_1971 purple_photosynthetic_bacteria_and_relatives 20543071 1338 NA genomic_DNA NA ATCC_23769 NA Gluconacetobacter_hansenii_corrig._(Gossele_et_al._1983)_Yamada_et_al._1998_emend._Lisdiyanti_et_al._2006 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 714995 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodospirillales,_Acetobacteraceae,_Gluconacetobacter Genome_sequence_of_a_cellulose-producing_bacterium,_Gluconacetobacter_hansenii_ATCC_23769 NA ADTV01000030.1 ATGAATGCTGATGACGGGAGTGTTGCCGAATGTATTGCCCGCCTCGAAAGCCCATCTTCGGACGGTTGGCGGCATCGGGTGCGTCTGGTCGTTGGAATGGCAACTTTCCTTGATTCCTTCGATATATTCTCGATTGCCTTCGTCATGCCGGTAATGGCGCCCCTGTGGCATCTTTCACCCGTGCAGGTGGGGATGGTGTTCTCTATCGGTTTTCTGGGGCAGATGATCGGGTCTGTGGTATTCGGTTTTTTTTCAGAACGTTACGGTCGTATTCGTGCACTTTCGGTTGCTGTGTTTATATTCGCGGTGGCCACACTCCTCTCCGCGCTGGTGCAGTCCGCAGCGCAGTTCGAGGCCCTGCGGTTCATACAGGGGCTGGGACTGGGCGGGCATGTGCCGATTGCCGCGACCTATATAACAGAGATCTCCCGTCAGGCCGGACGGGGCAGGTTTGTCCTGCTTTATGAAAGCATTTTTGCGGTTGGCAATGTGCTGGCCGCGGTTATCTGCCGTATATTCCTGGCGGCTTTCGGCTGGCAGTCGATATTCTGGCTTTCTGGTGTGGCTGGTGTGCTGCTCCTGCCGTTTGTCATGCGCCTGCCGGAATCGCCACGCTGGTTATGCGCGCGCGGGCAGGCGCGTTATGCCCTTGATCTGGTCCGTGGTCTTGAGACGGGCAAGCCGCAGGGCCCTGGCCCGTTGCCTGCACCGGTCCATGGTGGGGCTGCTGGTTGCCTGCACGTGCCCTTATTCCTGCCGCGCGATAGCCTGCGCCTGCTGCTGTTGACCGTTCCGTTATGGTTCGCGCTGGGGTTACTTAATTATGGGCTCGCGACGTGGTTGCCCATCATCTACACACGTCAATTCAGACTGCCTGTGTCCGATGCACTGGATTATAGCATCATTCGCAGTGTCATCATCTTTATCGGCACGATCGCGTGCAGTTTGGCCATCGACGCCATCGGACGTCGCAAGATCGTAATGGGGGGCTTCCTCTGTGCGGCATTGCCACTTGTTGCCCTGGCACTCATGGGTAGCGCGATGACCGCTGGGTGGGTATTTTTCATGACCCTTATCACCAGTTTCTTTGTCGCTGTCCTTATGCTGGCTGTTTATCTCTATACCCCCGAACTCTGTCCCGCGCAGGCGCGGGGTGCGTTTACCGGGTTTAATGCCGCCGTTCTGAGGTTTGCGTCCATGATTGCGCCCGGTGCGGTGGGACTGGGCATGAGCCACGGTTCCATTGCCGGGGTGTTCATGCTTTTCGCCGCTGTTGGCCTGATGGTCAGCGGCATAAGTTTCGTAATGGCTCGGGAGACCCGGCATCTGGTTATGTGA > 605 GXY_16257 COG0477_Permeases_of_the_major_facilitator_superfamily sugar-proton_symporter EFG82940.1 11 MAQDTKAASTPPIVGLIAAVAATGGLLFGYDTGIISAALLQITSDFTLDTLGQQVVTSAIVAGALGGCLVAAPLSDRLGRRYMIMLAALVFIFGTLVASFSPGVSLLVFARFILGLAVGMCSQIVPVYIAEIAPREKRGQMVVLFQMAVVAGILASFIVGYLLQDRSWRLMFGLGVVPAVILFVGMSLLPRSPRWLAMKGNLEGAFEVLQRLRHDPAVARSELDSIIAMHDEQAPWSALFQPWVRPALVASVGVALFCQITGVNAVLYYAPTIFAGVGFGKSSALLTSIAIGVAMLASTTFGSWAVDAWGRRTLLLRLIPGAVVSLLVLGAMFAIGATQGINTWITAAAVVSYAIFNVGSLSVAVWLVGAEVYPLSCRSKGMSLVAATHWVADLVVSLTTLSLVQALGAAGTFWMFAVLNLAAFLFVLRYVPETRGRSLEEIEVSLKNGTFSKMK alpha_subgroup Gluconacetobacter_hansenii_ATCC_23769 Gluconacetobacter_hansenii_ATCC_23769 ADTV01000067 97524..98891 Iyer,P.R.,_Geib,S.M.,_Catchmark,J.,_Kao,T.H._and_Tien,M. NA 0:1368 Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation.##Genome-Assembly-Data-START##Genome_Coverage_::_22xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 11-MAY-2010 Gluconacetobacter_hansenii_ATCC_23769_GXY0067,_whole_genome_shotgun_sequence. NA alpha-1_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Gluconacetobacter_hansenii_D5QJB8_GLUHA.gb Gluconoacetobacter 295976058 J._Bacteriol._192_(16),_4256-4257_(2010) NA ADTV01000067 NA NA Rhodospirillales_Pfennig_and_Truper_1971 purple_photosynthetic_bacteria_and_relatives 20543071 1368 NA genomic_DNA NA ATCC_23769 NA Gluconacetobacter_hansenii_corrig._(Gossele_et_al._1983)_Yamada_et_al._1998_emend._Lisdiyanti_et_al._2006 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 714995 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodospirillales,_Acetobacteraceae,_Gluconacetobacter Genome_sequence_of_a_cellulose-producing_bacterium,_Gluconacetobacter_hansenii_ATCC_23769 NA ADTV01000067.1 ATGGCGCAAGACACCAAGGCGGCCTCCACCCCCCCGATTGTTGGCCTGATCGCGGCCGTGGCGGCGACGGGGGGGCTTTTGTTCGGTTATGACACGGGCATCATTTCCGCCGCGCTGTTGCAGATTACCAGTGATTTCACGCTCGATACGCTGGGACAGCAGGTCGTGACCTCGGCCATCGTGGCTGGCGCGCTGGGTGGTTGCCTGGTTGCCGCCCCCCTGTCGGACCGGCTGGGGCGGCGTTACATGATCATGCTGGCCGCCCTTGTGTTCATATTCGGCACGCTGGTGGCGTCGTTTTCGCCCGGTGTGTCCCTGCTGGTGTTCGCGCGGTTCATCCTGGGGCTGGCGGTGGGCATGTGTTCGCAGATCGTGCCGGTCTATATCGCCGAAATCGCGCCGCGTGAAAAACGCGGGCAGATGGTGGTCCTGTTCCAGATGGCGGTGGTCGCGGGTATCCTTGCCTCTTTCATCGTGGGATATCTGTTGCAGGACCGTTCTTGGCGGCTGATGTTCGGGTTGGGCGTCGTGCCAGCGGTGATCCTGTTTGTGGGGATGTCGCTGCTGCCGCGCAGCCCGCGTTGGCTGGCGATGAAAGGCAACCTTGAAGGCGCGTTTGAAGTGCTGCAACGCCTGCGCCATGACCCGGCGGTGGCGCGAAGCGAACTTGACTCCATCATCGCCATGCATGACGAGCAGGCGCCATGGTCCGCCCTGTTCCAGCCATGGGTGCGTCCCGCACTGGTGGCCTCGGTCGGGGTGGCCCTGTTCTGTCAGATCACGGGTGTGAATGCTGTGCTGTATTATGCGCCGACGATCTTTGCCGGTGTAGGATTTGGCAAGAGTTCGGCGCTGCTGACCTCCATCGCCATTGGGGTGGCGATGCTGGCCTCCACCACATTCGGCAGTTGGGCCGTCGATGCGTGGGGGCGGCGTACGCTGCTGTTGCGCCTGATCCCTGGAGCTGTGGTGTCGCTGCTGGTGCTGGGCGCGATGTTCGCCATCGGTGCGACACAGGGGATCAATACATGGATCACGGCGGCGGCCGTCGTGTCCTATGCCATCTTCAACGTCGGAAGCCTGTCGGTCGCGGTCTGGCTGGTGGGGGCGGAGGTCTATCCCCTGTCATGCCGCAGCAAGGGAATGAGCCTTGTGGCCGCGACGCACTGGGTGGCGGACCTGGTGGTATCGCTGACGACGCTGTCGCTGGTGCAGGCGTTGGGGGCGGCGGGCACGTTCTGGATGTTTGCCGTGCTGAACCTTGCGGCGTTCCTGTTCGTCCTGCGTTATGTGCCGGAAACGCGTGGACGCTCGCTGGAGGAAATTGAGGTCTCGCTCAAGAACGGTACGTTCAGCAAGATGAAATAA > 606 CGSHi7P49H1_07530 COG0477_Permeases_of_the_major_facilitator_superfamily transport_protein EEP46316.1 11 MNTQNSLKQVATATMVGTAIEYFDNYIYAMAAVLVFNHQFFHAADPLSGQIAALSTLALTFIARPLGAILFGHFGDRFGRKNTFVMSLLLMGISTVVIGLLPTYDSIGIWATILLCLCRIGQGIGLGGEWGGAALVAVENAPEGKRGWYGTFPQLGAPLGLLLANGVFLGITAIFGQEAMTEWAWRIPFLSSVILVAIGLYVRLKLTEAPIFLAALNKPQPKRLPMLEVVTTYFKPFFLGMLVCIAGYVLFYIMIAFSQIYAKSAPTVSEAGYAMGLGFSPQIFTALLMASAVSLAITIAASGKYIDKIGRRIWLIWTTVGVAIFGLSLPLFLENGTTTSLFWFLFIGMGLIGMGYGPLASFLPELFPTHARYSGASLTYNIAGLFGASVAAIIALPLNAHYGLKGVGIYLTLNAVLSLIGLWFISETKDKLLS gamma_subgroup Haemophilus_influenzae_7P49H1 Haemophilus_influenzae_7P49H1 ABWV01000002 198336..199640 Ehrlich,G.D. NA 0:1305 Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation. NA 08-MAY-2009 Haemophilus_influenzae_7P49H1_ctg29,_whole_genome_shotgun_sequence. NA Pasteurellaceae_Pohl_1981 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Haemophilus_influenzae_C4EZE0_HAEIF.gb Haemophilus_Winslow_et_al._1917 229810401 Submitted_(20-JUN-2008)_Center_for_Genomic_Sciences,_Allegheny-Singer_Research_Institute,_320_E._North_Ave._11th_Floor,_Pittsburgh,_PA_15212-4772,_USA NA ABWV01000002 NA NA Pasteurellales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives NA 1305 NA genomic_DNA NA 7P49H1 NA Mycobacterium_influenzae NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 521005 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pasteurellales,_Pasteurellaceae,_Haemophilus Direct_Submission NA ABWV01000002.1 ATGAATACGCAAAATAGTTTAAAGCAAGTAGCAACAGCGACGATGGTCGGCACTGCAATTGAGTATTTCGATAACTACATTTACGCAATGGCAGCGGTATTGGTATTTAACCATCAATTCTTCCATGCCGCAGATCCACTTTCAGGGCAGATTGCGGCACTTTCCACTTTAGCACTTACTTTTATTGCTCGCCCTTTGGGAGCAATATTGTTCGGGCATTTCGGTGACCGTTTCGGGCGGAAAAATACTTTTGTGATGAGCTTGCTGTTGATGGGTATTTCCACTGTGGTTATCGGTTTGTTGCCAACCTATGACAGCATCGGTATTTGGGCGACAATTTTGCTCTGTTTATGCCGTATTGGGCAAGGTATCGGTTTAGGCGGAGAGTGGGGCGGTGCTGCGTTAGTTGCGGTTGAAAATGCTCCAGAAGGTAAACGAGGTTGGTATGGTACTTTCCCACAACTGGGAGCCCCGCTTGGCTTGTTGTTGGCAAATGGCGTATTCTTAGGCATTACTGCGATTTTCGGGCAAGAAGCTATGACTGAATGGGCGTGGCGGATACCATTTTTATCTTCCGTTATCTTAGTGGCAATTGGCTTATATGTTCGCCTAAAACTGACTGAAGCCCCGATTTTCCTTGCGGCACTCAATAAACCGCAGCCAAAACGCTTACCAATGTTGGAAGTTGTCACTACTTATTTCAAGCCGTTTTTCTTAGGAATGTTGGTTTGCATTGCTGGCTATGTGCTGTTCTACATTATGATTGCCTTTAGCCAAATTTACGCCAAATCTGCCCCAACGGTTTCAGAGGCAGGATACGCAATGGGATTAGGATTTTCTCCGCAAATTTTTACCGCTTTATTGATGGCAAGTGCGGTTTCTTTGGCTATTACCATTGCCGCTTCGGGCAAATATATCGACAAAATTGGTCGCCGTATTTGGCTCATTTGGACAACCGTTGGCGTTGCGATTTTTGGTTTATCCTTGCCGTTATTTCTCGAAAACGGTACAACTACCAGTCTGTTTTGGTTTTTATTCATCGGTATGGGGTTAATTGGAATGGGCTATGGACCATTAGCAAGTTTTTTACCTGAACTCTTCCCTACTCACGCCCGCTATTCAGGTGCTTCTTTAACCTATAATATTGCAGGTTTATTCGGGGCAAGTGTTGCGGCAATCATTGCCTTACCGCTGAATGCTCACTACGGCTTAAAAGGTGTGGGGATTTATTTAACCCTAAACGCTGTATTGAGCTTGATTGGATTATGGTTTATTTCAGAAACGAAAGATAAATTACTATCCTAA > 607 NTHI0543 Similar_to:_HI0418,_Y418_HAEIN metabolite_transporter YP_248132.1 11 MNTQNSLKQVATATMVGTAIEYFDNYIYAIAAVLVFNHQFFHVADPLSGQIAALSTLALTFIARPLGAILFGHFGDRFGRKNTFVMSLLLMGVSTVVIGLLPTYDSIGIWATILLCLCRIGQGIGLGGEWGGAALVAVENAPEGKRGWYGTFPQLGAPLGLLLANGVFLGITAIFGQEAMTEWAWRIPFLSSVILVAIGLYVRLKLTEAPIFLAALNKPQPKRLPMLEVVTTYFKPFFLGMLICIAGYVLFYIMIAFSQIYAKSAPTVSEAGYAMGLGLSPQIFTALLMASAVSLAITIAVSGKYIDKIGRRIWLIWTTVGVAIFGLSLPLFLENGTTTSLFWFLFIGMGLIGMGYGPLASFLPELFPTHARYSGASLTYNIAGLFGASVAAIIALPLNAHYGLKGVGIYLTLNAVLSLVGLWFISETKDKLLS gamma_subgroup Haemophilus_influenzae_86-028NP Haemophilus_influenzae_86-028NP NC_007146 508212..509516 Harrison,A.,_Dyer,D.W.,_Gillaspy,A.,_Ray,W.C.,_Mungur,R.,_Carson,M.B.,_Zhong,H.,_Gipson,J.,_Gipson,M.,_Johnson,L.S.,_Lewis,L.,_Bakaletz,L.O._and_Munson,R.S._Jr. NA 0:1305 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000057.On_Dec_18,_2007_this_sequence_version_replaced_gi:68248551.COMPLETENESS:_full_length. NA 22-JAN-2012 Haemophilus_influenzae_86-028NP_chromosome,_complete_genome. NA Pasteurellaceae_Pohl_1981 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Haemophilus_influenzae_Q4QNC5_HAEI8.gb Haemophilus_Winslow_et_al._1917 162960935 J._Bacteriol._187_(13),_4627-4636_(2005) NA NC_007146 NA NA Pasteurellales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives 15968074 1305 NA genomic_DNA NA 86-028NP NA Mycobacterium_influenzae NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 281310 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pasteurellales,_Pasteurellaceae,_Haemophilus Genomic_Sequence_of_an_Otitis_Media_Isolate_of_Nontypeable_Haemophilus_influenzae:_Comparative_Study_with_H._influenzae_Serotype_d,_Strain_KW20 NA NC_007146.2 ATGAATACGCAAAATAGTTTAAAGCAAGTAGCAACAGCGACGATGGTCGGCACGGCGATTGAGTATTTCGATAACTACATTTACGCAATAGCAGCGGTATTGGTATTTAACCATCAATTCTTCCATGTAGCAGATCCACTTTCAGGGCAGATTGCGGCACTTTCCACTTTAGCACTTACTTTTATTGCTCGCCCTTTGGGAGCAATATTGTTCGGGCATTTCGGTGACCGTTTCGGGCGGAAAAATACTTTTGTGATGAGCTTGCTGTTGATGGGCGTTTCCACTGTGGTTATCGGTTTGTTGCCAACCTATGACAGCATCGGTATTTGGGCGACAATTTTGCTCTGTTTATGCCGTATTGGGCAAGGTATCGGTTTAGGCGGAGAGTGGGGCGGTGCAGCGTTAGTTGCGGTCGAAAATGCTCCAGAAGGTAAACGAGGTTGGTATGGTACTTTCCCACAACTGGGAGCCCCGCTTGGCTTGTTGTTGGCAAATGGCGTATTCTTAGGCATTACGGCAATTTTCGGGCAAGAAGCTATGACTGAATGGGCGTGGCGGATACCGTTTTTATCTTCCGTTATCTTAGTGGCAATTGGCTTATATGTTCGCCTAAAACTGACTGAAGCCCCGATTTTCCTTGCGGCACTCAATAAACCGCAGCCAAAACGCTTACCAATGTTGGAAGTTGTCACTACTTATTTCAAGCCGTTTTTCTTGGGGATGTTAATTTGTATTGCAGGCTATGTGCTGTTCTACATTATGATTGCCTTTAGCCAAATTTACGCCAAATCTGCCCCAACGGTTTCAGAGGCAGGATACGCAATGGGATTAGGACTTTCCCCGCAAATTTTTACCGCTTTATTGATGGCAAGTGCGGTTTCTTTGGCTATTACCATCGCCGTTTCGGGCAAATATATCGACAAAATTGGTCGCCGTATTTGGCTCATTTGGACAACCGTTGGCGTTGCGATTTTTGGTTTATCCTTGCCGTTATTTCTCGAAAACGGTACAACTACCAGTCTGTTTTGGTTTTTATTCATCGGTATGGGGTTAATTGGAATGGGCTATGGACCATTAGCGAGTTTTTTACCTGAACTCTTCCCTACTCACGCCCGCTATTCAGGTGCTTCTTTAACCTATAATATTGCAGGTTTATTCGGGGCAAGTGTTGCAGCAATCATTGCCTTACCGCTGAATGCTCACTACGGCTTAAAAGGTGTGGGGATTTATTTAACCCTAAACGCTGTGTTGAGCTTGGTTGGATTATGGTTTATTTCAGAAACGAAAGATAAATTACTATCCTAA > 608 HPKB_0362 Consensus_COG_by_CONSORF:_COG0477 alpha-ketoglutarate_permease ACX98971.1 11 MNPQTQPATKKPLRSLLAASSGNLVEWYDFYAYAFLAPYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMALGSFLLALLPTKEIVGEWAFLFLLLARLLQGFSVGGEYGVVATYLSELGKNGKKGFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNVMEETMDSQTTFKTTIKEKTQRGSLKELLNHKKALMIVFGLTMGGSLCFYTFTVYLKIFLTNSSSFSPKESSFIMLLALSYFILLQPLCGILADKIKRTQMLMVFAIAGLIVTPVVFYGIKHASGVYEALFYEMLALSAMSFYTCIAGVVKAELFPEHVRALGVGLAYAIANALFGGSASYVALQFKQHGFEWGFVGYVMFSIVIFMVMVIIFPKKTYLE not_Epsilobacteria_Cavalier-Smith_2002 Helicobacter_pylori_52 Helicobacter_pylori_52 CP001680 369887..371173 Kim,S.,_Lee,W.K.,_Choi,S.H.,_Kang,S.,_Park,H.S.,_Kim,Y.S.,_Lee,S.G.,_Byun,E.Y.,_Jeong,J.E.,_Park,Y.H.,_Lee,E.J.,_Kim,J.S.,_Ryu,B.D.,_Lee,Y.S.,_Hahn,Y.,_Yeom,Y.I.,_Park,S.G.,_Youn,H.S.,_Ko,G.H.,_Choi,M.B.,_Park,C.H.,_Lim,J.Y.,_Bae,D.W.,_Song,J.Y.,_Park,J.U.,_Kang,H.L.,_Baik,S.C.,_Cho,M.J.,_Yoo,H.S._and_Rhee,K.H. NA 0:1287 Bacteria_available_from_Deapartment_of_Microbiology,_GyeongsangNational_University_College_of_Medicine,_Korea_(contact:_Kwang_HoRhee,_khrhee1@gnu.kr_). NA 27-OCT-2009 Helicobacter_pylori_52,_complete_genome. NA Helicobacteraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Helicobacter_pylori_D0JYQ1_HELP5.gb Helicobacter_Goodwin_et_al._1989_emend._Vandamme_et_al._1991 261838873 Submitted_(15-JUL-2009)_KRIBB,_111_Gwahangno,_Yuseong-gu,_Daejeon_305-806,_Korea NA CP001680 NA NA Campylobacterales purple_photosynthetic_bacteria_and_relatives NA 1287 NA genomic_DNA NA 52 NA Helicobacter_pylori_(Marshall_et_al._1985)_Goodwin_et_al._1989 NA complement NA NA NA NA NA not_Thiobacteria_Cavalier-Smith_2002 NA NA NA NA prokaryotes NA 684950 Bacteria,_Proteobacteria,_Epsilonproteobacteria,_Campylobacterales,_Helicobacteraceae,_Helicobacter Direct_Submission NA CP001680.1 TTATTCCAAGTAGGTTTTTTTAGGGAATATGATAACCATAACCATAAAGATAACAATACTAAACATGACATAGCCCACAAACCCCCATTCAAAACCATGTTGTTTGAATTGCAACGCTACATAACTCGCGCTCCCTCCAAAAAGCGCATTCGCAATCGCATAGGCTAAACCCACGCCAAGCGCTCGCACATGTTCAGGGAATAATTCCGCTTTAACGACCCCAGCAATGCAAGTGTAAAAACTCATCGCGCTCAATGCAAGCATTTCATAAAATAGGGCTTCATACACGCCACTAGCATGCTTGATGCCATAAAAGACAACGGGCGTTACAATAAGCCCTGCGATAGCAAAAACCATCAGCATTTGGGTGCGCTTGATTTTATCAGCCAGTATCCCGCATAAGGGTTGTAACAAGATAAAATAAGAGAGCGCTAAAAGCATGATAAAACTGCTTTCTTTAGGGCTGAATGATGAGCTGTTGGTTAAAAAGATTTTTAAATACACCGTAAAAGTATAAAAACACAAACTCCCTCCCATAGTTAGCCCAAAGACTATCATTAAGGCTTTTTTATGGTTGAGCAATTCCTTTAAACTGCCTCTTTGGGTTTTTTCTTTAATAGTGGTTTTAAAAGTTGTTTGACTATCCATAGTTTCTTCCATGACATTTCTTAAAAAGAGCGAGAGCAAGGCTAATATACCCCCTAAAGCGAATAAATAACGCCAAGCAAACGCGCTGATTTGCTCATGCGTGTAGATATTTTCAACGATAAAGAGTGAAAAAATAGCTAAGAGTTGCCCTCCCACTAAAGTTACATATTGGAAAGAGCCATAAAAACCTTTTTTGCCGTTCTTGCCTAATTCAGAGAGGTAAGTAGCGACCACGCCATATTCTCCTCCCACGCTAAAGCCTTGTAAAAGCCTGGCTAACAATAAAAACAAGAACGCCCATTCCCCTACGATTTCTTTAGTGGGGAGCAATGCGAGCAAAAAAGAGCCTAGCGCCATAAGGATAATGGAATACACCATGGAAGTTTTACGCCCCTTTTTATCCCCCAATTTACCAAAAAACAAACTCCCCAAAGGGCGCATGAAAAACCCTAGCATGAAAACTAAAAAAGCTGAGATTAGCGCTAAAGTGGGGTCATTCGTGTGGGTAAATTCCTTAGCAAAATAAGGGGCAAGGAACGCATAAGCGTAAAAGTCATACCATTCTACTAAATTGCCTGAACTAGCGGCTAAAAGGGATCTTAAGGGTTTTTTGGTGGCTGGTTGGGTTTGGGGGTTCAT > 609 HPB8_1210 KO:K03761_TC:2.A.1.6 MHS_family_alpha-ketoglutarate_permease YP_003729231.1 11 MSSQTATKKPLKSLLAASSGNLVEWYDFYAYAFLAPYFAKEFTHTNDPTLALISAFLVFMLGFFMRPLGSLFFGKLGDKKGRKTSMVYSIILMALGSFLLALLPTKEIVGEWAFLFLLLARLLQGFSVGGEYGVVATYLSELGKNGKKGFYGSFQYVTLVGGQLLAIFSLFIVENIYTHEQISAFAWRYLFALGGILALLSLFLRNIMEETMDSKTTSKTTIKEETQRGSLKELLNHKKALMIVFGLTMGGSLCFYTFTVYLKIFLTNSSSFSPKESSFIMLLALSYFIFLQPLCGMLADKIKRTQMLMIFAITGLIVTPVVFYGIKHATSVHEALFYEILALSSMSFYTCIAGVIKAELFPEHVRALGVGLAYAIANALFGGSASYVALEFKQHGFEAGFVGYVMLSIIIFMVMVIIFPKKTYLE not_Epsilobacteria_Cavalier-Smith_2002 Helicobacter_pylori_B8 Helicobacter_pylori_B8 NC_014256 1185329..1186609 Farnbacher,M.,_Jahns,T.,_Willrodt,D.,_Daniel,R.,_Haas,R.,_Goesmann,A.,_Kurtz,S._and_Rieder,G. NA 0:1281 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FN598874.COMPLETENESS:_full_length. NA 26-JAN-2012 Helicobacter_pylori_B8_chromosome,_complete_genome. NA Helicobacteraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Helicobacter_pylori_D7FF10_HELP3.gb Helicobacter_Goodwin_et_al._1989_emend._Vandamme_et_al._1991 298735500 BMC_Genomics_11,_335_(2010) NA NC_014256 NA NA Campylobacterales purple_photosynthetic_bacteria_and_relatives 20507619 1281 NA genomic_DNA NA B8 NA Helicobacter_pylori_(Marshall_et_al._1985)_Goodwin_et_al._1989 NA forward NA NA NA NA NA not_Thiobacteria_Cavalier-Smith_2002 NA NA NA NA prokaryotes NA 693745 Bacteria,_Proteobacteria,_Epsilonproteobacteria,_Campylobacterales,_Helicobacteraceae,_Helicobacter Sequencing,_annotation,_and_comparative_genome_analysis_of_the_gerbil-adapted_Helicobacter_pylori_strain_B8 NA NC_014256.1 ATGAGCTCCCAAACCGCCACCAAAAAACCCTTAAAATCCCTTTTAGCCGCTAGTTCAGGTAATTTAGTGGAATGGTATGACTTTTACGCTTATGCGTTCTTAGCGCCTTATTTCGCTAAGGAATTTACCCACACGAACGACCCCACTTTAGCGCTAATCTCAGCTTTTTTGGTTTTTATGCTAGGGTTTTTCATGCGCCCTTTGGGGAGTTTGTTTTTTGGTAAATTGGGGGATAAAAAGGGGCGTAAAACTTCTATGGTGTATTCCATTATCCTTATGGCGCTAGGCTCTTTTTTGCTCGCATTGCTCCCCACTAAAGAAATCGTAGGGGAATGGGCGTTCTTGTTTTTATTATTAGCCAGGCTTTTACAGGGCTTTAGCGTGGGAGGCGAATACGGCGTGGTCGCTACTTATCTCTCTGAATTGGGCAAGAATGGTAAAAAAGGTTTTTATGGCTCTTTCCAATATGTAACTTTAGTGGGAGGGCAACTCTTAGCTATTTTTTCGCTCTTTATCGTTGAAAACATTTACACGCATGAGCAAATCAGCGCGTTCGCTTGGCGTTATTTATTCGCTTTAGGGGGTATATTAGCCCTACTCTCGCTCTTTTTAAGAAATATCATGGAAGAAACCATGGATAGCAAAACAACTTCCAAAACCACTATTAAAGAAGAAACCCAAAGAGGCAGTTTAAAGGAATTGCTCAACCATAAAAAAGCCTTAATGATAGTCTTTGGGCTAACTATGGGAGGGAGTTTGTGTTTTTATACTTTTACGGTGTATTTAAAAATCTTTTTAACCAACAGCTCATCATTCAGCCCTAAAGAAAGCAGTTTTATCATGCTTTTAGCGCTCTCTTATTTCATCTTCTTACAACCCTTATGTGGGATGCTGGCTGATAAAATCAAACGCACCCAAATGCTGATGATTTTTGCTATCACAGGGCTTATTGTAACGCCTGTTGTCTTTTATGGTATCAAGCATGCCACTAGCGTGCATGAAGCCCTATTTTATGAAATACTCGCATTGAGCAGCATGAGTTTTTACACTTGCATTGCTGGGGTCATTAAGGCGGAATTATTCCCTGAACATGTGCGAGCGCTTGGCGTGGGTTTGGCCTATGCGATCGCCAATGCGCTTTTTGGAGGGAGCGCAAGCTATGTAGCGTTAGAGTTCAAACAACATGGTTTTGAAGCGGGGTTTGTGGGCTATGTCATGTTGAGTATTATTATCTTTATGGTTATGGTTATCATATTCCCTAAAAAAACCTATTTGGAATGA > 610 Hsero_0011 NA major_facilitator_superfamily_(MFS)_transporter_protein YP_003773449.1 11 MQPQLNKQRQVIAAIVGNALEWYDFIVYGFFSAIIARLFFPADNEYTSLLVALATFGIGFFMRPVGGVLLGLYADRKGRKAAMQVIIVLMTLAIAIIAFTPTYATIGIAAPIMIVVARMLQGFATGGEYSSSTAFLVESAPAHKRGLYGSWQLVGQCLAVFCGAGMGALVTRNLSPEALDSWGWRLPFVLGLLIGPVGLWIRRHMHETDDFLESANKPNAAPIKLLDVVKTNLRGVLVSMGQVINGTVAFYVVLVNMPTFANKQLGLPLDQAFMVQMIAVALLTAVIPFAGALSDRLGRRTVLLYSSLAFLLMVYPLFVWVSAAPSLPRLLVMQVLLCIVIGANFGPMPTALSEQFPTRVRSTGLAVAYNLAAMLFGGFAPFIVTWLTKTSGSPVAPAWYVLFAACIGVSAAWAMRDQSPAAKNRQTEVFAGIGEIK beta_subgroup Herbaspirillum_seropedicae_SmR1 Herbaspirillum_seropedicae_SmR1 NC_014323 16312..17625 Pedrosa,F.O.,_Monteiro,R.A.,_Wassem,R.,_Cruz,L.M.,_Ayub,R.A.,_Colauto,N.B.,_Fernandez,M.A.,_Fungaro,M.H.P.,_Grisard,E.C.,_Hungria,M.,_Madeira,H.M.F.,_Nodari,R.O.,_Osaku,C.A.,_Petzl-Erler,M.L.,_Terenzi,H.,_Vieira,L.G.E.,_Almeida,M.I.M.,_Alves,L.R.,_Arantes,O.M.N.,_Balsanelli,E.,_Barcellos,F.G.,_Baura,V.A.,_Binde,D.R.,_Campo,R.J.,_Chubatsu,L.S.,_Chueire,L.M.O.,_Ciferri,R.R.,_Correa,L.C.,_da_Conceicao_Silva,J.L.,_Dabul,A.N.G.,_Dambros,B.P.,_Faoro,H.,_Favetti,A.,_Friedermann,G.,_Furlaneto,M.C.,_Gasques,L.S.,_Gimenes,C.C.T.,_Gioppo,N.M.R.,_Glienke-Blanco,C.,_Godoy,L.P.,_Guerra,M.P.,_Karp,S.,_Kava-Cordeiro,V.,_Margarido,V.P.,_Mathioni,S.M.,_Menck-Soares,M.A.,_Murace,N.K.,_Nicolas,M.F.,_Oliveira,C.E.C.,_Pagnan,N.A.B.,_Pamphile,J.A.,_Patussi,E.V.,_Pereira,L.F.P.,_Pereira-Ferrari,L.,_Pinto,F.G.S.,_Precoma,C.,_Prioli,A.J.,_Prioli,S.M.A.P.,_Raittz,R.T.,_Ramos,H.J.O.,_Ribeiro,E.M.S.F.,_Rigo,L.U.,_Rocha,C.L.M.S.C.,_Rocha,S.N.,_Santos,K.,_Satori,D.,_Silva,A.G.,_Simao,R.C.G.,_Soares,M.A.M.,_Souza,E.M.,_Steffens,M.B.R.,_Steindel,M.,_Tadra-Sfeir,M.Z.,_Takahashi,E.K.,_Torres,R.A.,_Valle,J.S.,_Vernal,J.I.,_Vilas-Boas,L.A.,_Watanabe,M.A.E.,_Weiss,V.A.,_Yates,M.A._and_Souza,E.M. NA 0:1314 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002039.Herbaspirillum_seropedicae_strain_SmR1_is_a_spontaneousstreptomycin_resistant_mutant_of_strain_Z78_(ATCC_35893)_and_can_beobtained_from_the_Nucleo_de_Fixacao_de_Nitrogenio_(NFN),_Dpto._deBioquimica_e_Biologia_Molecular_of_Federal_University_of_Parana(UFPR),_culture_collection_upon_request_from_Fabio_de_OliveiraPedrosa_(fpedrosa@ufpr.br),_Emanuel_Maltempi_de_Souza(souzaem@ufpr.br)_or_Leonardo_Magalhaes_Cruz_(leonardo@ufpr.br).COMPLETENESS:_full_length. NA 26-JAN-2012 Herbaspirillum_seropedicae_SmR1_chromosome,_complete_genome. NA Oxalobacteraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Herbaspirillum_seropedicae_D8ITQ0_HERSS.gb Herbispirillum 300309346 Unpublished NA NC_014323 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1314 NA genomic_DNA NA SmR1 NA Herbispirillum_seropedicense NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 757424 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Oxalobacteraceae,_Herbaspirillum The_genome_of_Herbaspirillum_seropedicae_SmR1,_an_endophytic,_nitrogen-fixing,_plant-growth_promoting_beta-Proteobacteria NA NC_014323.1 GTGCAACCACAACTCAATAAACAACGTCAGGTCATTGCCGCGATTGTCGGCAATGCACTCGAATGGTACGACTTTATCGTCTATGGCTTCTTCTCGGCCATTATCGCTCGACTGTTTTTTCCTGCCGACAACGAATACACCTCATTGCTGGTTGCCCTCGCGACCTTCGGCATTGGTTTCTTCATGCGACCGGTGGGAGGCGTCCTGCTCGGTCTTTATGCTGACCGCAAAGGCCGAAAGGCCGCGATGCAGGTCATCATCGTGCTGATGACACTGGCCATCGCAATCATCGCCTTCACTCCCACGTACGCCACTATCGGCATTGCAGCCCCCATCATGATTGTCGTCGCACGCATGTTGCAGGGTTTCGCGACCGGCGGCGAATACTCCAGTTCGACCGCATTTTTGGTGGAGAGCGCGCCAGCTCACAAGCGCGGACTGTATGGGTCATGGCAACTGGTTGGCCAGTGTCTCGCGGTCTTCTGCGGCGCCGGCATGGGCGCCCTGGTGACGCGTAATTTATCGCCGGAGGCTCTGGACAGCTGGGGATGGCGACTGCCGTTCGTCCTCGGCCTGCTGATCGGCCCTGTGGGTCTGTGGATCCGTCGCCATATGCATGAGACAGATGATTTTCTGGAAAGCGCCAACAAGCCTAATGCAGCGCCCATCAAGTTGCTCGATGTGGTGAAGACCAACCTGCGTGGCGTACTCGTGTCGATGGGGCAGGTCATCAACGGTACAGTGGCCTTCTACGTCGTCCTGGTGAACATGCCGACGTTCGCCAACAAGCAGCTGGGGCTTCCTCTTGACCAGGCCTTCATGGTGCAGATGATTGCCGTAGCGTTGCTCACTGCTGTCATCCCTTTTGCCGGTGCACTGTCGGACCGCCTTGGTCGTCGGACCGTTCTGCTCTATAGCTCTCTGGCCTTCCTGTTGATGGTGTACCCGCTGTTCGTCTGGGTCTCGGCAGCCCCCAGCCTGCCTCGTCTGCTGGTAATGCAAGTGCTTCTGTGCATCGTCATTGGCGCAAATTTCGGTCCGATGCCGACCGCCCTGTCGGAGCAATTCCCGACGCGCGTGCGTTCCACCGGCCTTGCTGTGGCCTACAATCTGGCAGCGATGCTGTTTGGCGGCTTTGCTCCGTTCATCGTGACATGGCTCACCAAGACATCGGGTTCGCCAGTGGCGCCAGCGTGGTATGTGCTGTTCGCCGCCTGTATCGGTGTTTCGGCAGCCTGGGCGATGCGTGACCAAAGTCCGGCGGCAAAGAACCGGCAGACTGAAGTCTTCGCAGGAATTGGAGAGATCAAGTGA > 611 HEAR0090 Evidence_3_:_Function_proposed_based_on_presence_of_conserved_amino_acid_motif,_structural_feature_or_limited_homology;_Product_type_pt_:_transporter transporter YP_001098455.1 11 MGAFTGAFLRPNVANRLERLPMTNYQRSLFGIIATAWFFDSMDLGIMTFVLGSIKAEFGLSTAQAGLLASSSFLGMFLGAAIAGMLADKYGRKPVFQWSMVFWGVGSLACGFAQDVDQLMIFRVILGFGMGMEFPIGLSMVSEIVPAKSRGKYVAILEGFWPLGFIAAGILAYLTLPLIGWRGIFIALSVPAAFVFVIRRYVPESPRWLEEVGRNEEAEKVISTMEKSVIRANGGLALPEPAKQAAPSLLKGDKRALFAELWHGVYAKRTIMLWALWFFALLGYYGLTTWLGALLQQAGYEVTKSVTYTIYISLAGIPGFIFSAWLLEKWGRKPTCVLMLVGSAGAAYVYGQTASAQAPVEQLIASGLCMQFFMFGMWSVLYAYTPELYPTRSRATGAGFASSVGRLGSLLGPLAVGLILPFTGHTGVFTLGAVSFMIAAFVVIALGTETKGKSLEDVSG beta_subgroup Herminiimonas_arsenicoxydans Herminiimonas_arsenicoxydans NC_009138 84283..85665 Muller,D.,_Medigue,C.,_Koechler,S.,_Barbe,V.,_Barakat,M.,_Talla,E.,_Bonnefoy,V.,_Krin,E.,_Arsene-Ploetze,F.,_Carapito,C.,_Chandler,M.,_Cournoyer,B.,_Cruveiller,S.,_Dossat,C.,_Duval,S.,_Heymann,M.,_Leize,E.,_Lieutaud,A.,_Lievremont,D.,_Makita,Y.,_Mangenot,S.,_Nitschke,W.,_Ortet,P.,_Perdrial,N.,_Schoepp,B.,_Siguier,P.,_Simeonova,D.D.,_Rouy,Z.,_Segurens,B.,_Turlin,E.,_Vallenet,D.,_Van_Dorsselaer,A.,_Weiss,S.,_Weissenbach,J.,_Lett,M.C.,_Danchin,A._and_Bertin,P.N. NA 0:1383 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU207211.COMPLETENESS:_full_length. NA 20-JAN-2012 Herminiimonas_arsenicoxydans_chromosome,_complete_genome. NA Oxalobacteraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Herminiimonas_arsenicoxydans_A4G1D9_HERAR.gb Herminiimonas_Fernandes_et_al._2005 134093294 PLoS_Genet._3_(4),_E53_(2007) NA NC_009138 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 17432936 1383 NA genomic_DNA NA NA NA Herminiimonas_arsenicoxydans_Muller_et_al._2006 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 204773 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Oxalobacteraceae,_Herminiimonas A_tale_of_two_oxidation_states:_bacterial_colonization_of_arsenic-rich_environments NA NC_009138.1 ATGGGTGCATTTACTGGGGCTTTCCTCCGCCCGAACGTCGCCAATCGTCTTGAGCGACTTCCAATGACCAACTATCAGCGTTCGCTATTTGGCATCATCGCAACCGCCTGGTTCTTCGATTCGATGGATCTGGGCATCATGACCTTCGTCCTCGGTTCGATCAAAGCCGAATTCGGTTTGTCTACAGCGCAAGCCGGCTTGTTAGCCAGTTCCAGTTTCCTCGGCATGTTCCTCGGTGCAGCGATTGCAGGGATGCTGGCCGATAAATACGGCCGCAAACCGGTATTCCAGTGGAGTATGGTTTTCTGGGGTGTCGGCAGTCTTGCCTGCGGTTTCGCGCAAGACGTCGATCAATTGATGATTTTCCGCGTGATTCTCGGTTTCGGCATGGGGATGGAGTTTCCTATCGGCTTGTCGATGGTGTCGGAAATCGTGCCGGCGAAAAGTCGTGGTAAATACGTCGCGATTCTGGAAGGTTTCTGGCCGCTCGGCTTCATCGCTGCCGGTATCCTGGCTTACCTGACGCTGCCGTTGATCGGCTGGCGCGGTATCTTCATCGCCTTGTCCGTGCCTGCCGCTTTCGTGTTCGTGATTCGTCGCTATGTGCCTGAATCGCCACGCTGGCTGGAGGAAGTGGGCCGCAACGAAGAAGCGGAAAAAGTCATCAGCACGATGGAAAAGAGCGTTATCAGGGCGAACGGCGGGCTGGCATTGCCAGAGCCGGCCAAACAAGCTGCGCCATCCTTGCTGAAGGGCGACAAGCGCGCCCTGTTTGCCGAACTGTGGCACGGCGTGTACGCAAAACGTACGATCATGTTGTGGGCTTTGTGGTTCTTCGCGCTGCTCGGTTACTACGGCCTGACCACCTGGCTCGGCGCACTGCTGCAACAGGCTGGCTATGAAGTCACCAAATCGGTGACTTACACGATTTATATTTCGCTGGCGGGTATTCCGGGCTTTATCTTCTCGGCCTGGCTGCTGGAAAAATGGGGGCGCAAACCGACGTGCGTGCTGATGCTCGTCGGTAGTGCTGGTGCTGCTTATGTGTACGGTCAGACTGCGTCTGCACAAGCGCCGGTTGAGCAACTGATTGCTTCCGGTTTGTGCATGCAGTTCTTCATGTTCGGTATGTGGTCGGTGCTGTATGCCTATACGCCGGAACTGTATCCAACCCGTTCGCGTGCTACCGGTGCCGGTTTTGCTTCGTCAGTCGGCCGCCTCGGTTCGCTGCTGGGGCCTTTGGCAGTTGGCCTGATCCTGCCATTTACCGGACATACCGGCGTATTTACCCTGGGTGCAGTGTCTTTCATGATCGCGGCTTTTGTCGTGATTGCATTGGGCACTGAAACCAAAGGCAAGTCGCTGGAAGATGTATCCGGCTGA > 612 HY04AAS1_0694 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_acr:Acry_3608_general_substrate_transporter General_substrate_transporter YP_002121359.1 11 MAKVVKGSIAEALNTSQFSLFHIKAMFASAMGFFTSAYDLFIIGTALVLIKDEWHLSAQQVGLIGSISLIATFFGAFIFGNLADRLGRKSVYGIEAILMVLGALMSAFSFNVGFLLLSRFILGLGVGGDYPLSAVIMSEYANTTTRGRMVTLVFSAQALGLIAGPMVALTLLAAGVDKDLAWRIMLGLGALPAATVIYLRRRLPESPRWLARVKGEKEVAAKDLASFSLGDIVIEEVKDQIVKKPLSKYWLQLLGTAGTWFLFDYAYYGNTISTPLVLKHIATHANLIQSTAISFLIFVVFAVPGYFIAAATIDKIGHKFLQMLGFFMMGLMFFIIGMFPSIVHNFPLFVTLYGLSYFFAEFGPNTTTFVLPAEVFPVNVRTTAHGISAGVAKIGAFIGAYFFPILLKSLGLSHTLLLTFVFSLAGLILTYIAIPEPKGKSLEEVSQEDTTLSKPSPAT Aquificae_Reysenbach_2002 Hydrogenobaculum_sp._Y04AAS1 Hydrogenobaculum_sp._Y04AAS1 NC_011126 627302..628681 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Kiss,H.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Resenback,A.-L._and_Mead,D. NA 0:1380 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001130.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4005181Source_DNA_and_bacteria_available_from_David_Mead(dmead@lucigen.com)Contacts:_David_Mead_(dmead@lucigen.com)_David_Bruce_(microbe@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 20-JUL-2011 Hydrogenobaculum_sp._Y04AAS1_chromosome,_complete_genome. NA Aquificaceae_Reysenbach_2002 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Hydrogenobaculum_sp_B4U8C0_HYDS0.gb Hydrogenobaculum_Stohr_et_al._2001 195952380 Unpublished NA NC_011126 NA NA aquificales Aquificae_Reysenbach_2002 NA 1380 NA genomic_DNA NA Y04AAS1 NA Hydrogenobaculum_sp._Y04AAS1 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 380749 Bacteria,_Aquificae,_Aquificales,_Aquificaceae,_Hydrogenobaculum Complete_sequence_of_Hydrogenobaculum_sp._Y04AAS1 NA NC_011126.1 ATGGCAAAAGTTGTCAAAGGTAGTATAGCAGAAGCTTTAAACACTTCGCAGTTTAGTCTTTTTCACATCAAGGCTATGTTTGCTTCAGCCATGGGATTTTTTACATCGGCTTACGACTTGTTCATAATAGGTACTGCCCTTGTGCTAATAAAAGATGAATGGCACCTAAGCGCCCAACAAGTAGGTCTTATAGGTTCTATATCTCTTATAGCTACTTTCTTTGGTGCTTTTATCTTTGGAAATCTCGCAGACAGGCTTGGTAGAAAATCTGTTTACGGCATAGAAGCTATTTTGATGGTTTTAGGCGCTTTAATGTCCGCTTTTTCTTTTAACGTAGGCTTTTTACTTTTATCTCGTTTTATATTGGGCTTAGGAGTAGGGGGAGATTATCCTCTTTCTGCGGTTATAATGAGCGAGTATGCAAACACTACCACAAGAGGTAGAATGGTTACATTGGTATTTAGCGCTCAGGCACTGGGTTTGATAGCTGGACCTATGGTGGCGCTCACTCTTTTGGCGGCTGGAGTAGACAAAGATTTAGCCTGGAGAATAATGCTTGGGCTAGGTGCCTTACCAGCAGCTACGGTTATATATTTAAGAAGAAGGTTACCAGAATCCCCAAGATGGCTTGCAAGAGTTAAAGGTGAGAAAGAAGTGGCGGCAAAAGATTTAGCATCGTTTTCACTTGGTGATATAGTCATAGAAGAAGTCAAAGACCAGATAGTCAAAAAACCTTTATCAAAATATTGGTTACAGCTTTTAGGTACCGCTGGTACATGGTTTTTGTTTGACTACGCTTACTATGGCAACACTATATCAACACCTTTAGTACTAAAACATATAGCAACCCATGCAAATTTAATACAAAGTACAGCTATAAGCTTTCTAATATTTGTGGTATTTGCTGTACCTGGTTATTTCATAGCCGCTGCCACTATAGACAAAATAGGACATAAATTTTTGCAAATGCTTGGATTTTTCATGATGGGTCTTATGTTTTTCATAATAGGAATGTTTCCTTCAATAGTACACAATTTTCCTCTTTTCGTAACGTTGTATGGTTTGTCTTACTTCTTTGCAGAGTTTGGCCCAAATACCACCACCTTTGTATTGCCAGCGGAGGTATTTCCAGTAAACGTTAGAACCACAGCCCATGGTATATCTGCTGGCGTAGCTAAGATAGGCGCATTCATAGGAGCTTACTTCTTCCCAATCTTGTTAAAGTCGTTGGGATTAAGCCATACCTTGCTTTTGACATTTGTATTCTCGTTAGCTGGACTAATACTTACTTATATAGCAATCCCAGAACCAAAAGGAAAATCTTTGGAAGAAGTATCTCAAGAAGATACGACCCTTTCAAAGCCCTCACCTGCTACCTAA > 613 JNB_04925 COG0477_Permeases_of_the_major_facilitator_superfamily probable_dicarboxylic_acid_transport_integral_membrane_protein_kgtp_(dicarboxylate EAP99487.1 11 MSSTTVGRPDNTTRRAVLNTLKGSSGNLVEWYDVYVYTVFSTYFEPEFFGGDEPNAGIFTMAIFAVTFIMRPVGSWFFGRYADRRGRRPALVLSISMMAAASMVIALLPTHDRIGSLAIVLLVMCRLLQGFATGGEYGTSATYMSEAATAERRGFFSSFQYVTLIGGHALAQLMLLVLQVFLDDDQMSAFGWRIAFAVGGIAAVTVFWLRSTMDESMSASDLDSVDKQSGSLRALFTTHRKALITCFLITMGGTIAFYTYSVNAPSTIKATYKGEGLTASWINLTLLLFLMALQPIGGLISDRIGRKPMLVFFGIGGVIWTYFLITYLPQIHSPLGSWALVAVGYVILTGYTSINAIVKAELFPVRVRALGVGVGYALANSVFGGTAPVIYEAAKKSDHVTAFIVYVTLCIAASLLVYIFVLRNKSETELDREQGHAYASQKA high_GC_Gram+ Janibacter_sp._HTCC2649 Janibacter_sp._HTCC2649 AAMN01000002 1005012..1006343 Thrash,J.C.,_Cho,J.C.,_Bertagnolli,A.D.,_Ferriera,S.,_Johnson,J.,_Vergin,K.L._and_Giovannoni,S.J. NA 0:1332 Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation.Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation. NA 05-JAN-2006 Janibacter_sp._HTCC2649_1099316001545,_whole_genome_shotgun_sequence. NA Intrasporangiaceae_Rainey_et_al._1997_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Janibacter_sp_A3TM82_9MICO.gb Janibacter_Martin_et_al._1997 84382643 J._Bacteriol._193_(2),_584-585_(2011) NA AAMN01000002 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 21075932 1332 NA genomic_DNA NA HTCC2649 NA Janibacter_sp._HTCC2649 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Micrococcineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 313589 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Micrococcineae,_Intrasporangiaceae,_Janibacter Genome_sequence_of_the_marine_Janibacter_sp._strain_HTCC2649 NA AAMN01000002.1 ATGTCTTCAACCACCGTCGGTCGACCGGACAACACCACGAGGCGCGCAGTCCTCAACACGCTGAAGGGGTCGTCCGGCAACCTTGTCGAGTGGTACGACGTCTACGTCTACACGGTGTTCTCAACGTACTTCGAGCCCGAGTTCTTCGGTGGAGACGAGCCCAACGCCGGCATCTTCACGATGGCCATCTTCGCGGTGACGTTCATCATGCGACCTGTCGGCTCGTGGTTCTTCGGACGCTATGCCGACCGCCGCGGACGTCGACCGGCCCTCGTCCTCAGCATCTCGATGATGGCGGCGGCGTCGATGGTGATCGCCCTCCTTCCCACCCACGACCGCATCGGGTCGCTCGCGATCGTCCTGCTGGTGATGTGTCGCCTGCTCCAGGGCTTCGCGACAGGCGGCGAGTACGGCACGTCGGCCACCTACATGTCGGAGGCGGCGACTGCCGAACGGCGCGGCTTCTTCTCGTCCTTCCAGTACGTCACCCTGATCGGTGGGCACGCACTGGCGCAGCTGATGCTGCTCGTCCTGCAGGTCTTCCTCGACGACGACCAGATGTCTGCGTTCGGCTGGCGCATCGCCTTCGCCGTCGGCGGCATCGCGGCAGTCACGGTGTTCTGGCTGCGCTCGACGATGGACGAGTCCATGTCGGCCTCCGATCTGGACTCCGTCGACAAGCAGTCGGGCTCGCTGCGGGCACTGTTCACCACTCACCGCAAGGCCCTGATCACCTGCTTCCTCATCACCATGGGCGGCACCATCGCGTTCTACACCTACAGCGTCAACGCTCCCTCCACGATCAAGGCCACCTACAAGGGTGAGGGCCTGACGGCGAGCTGGATCAACCTCACCCTGCTGCTCTTCCTCATGGCGCTGCAGCCGATCGGCGGCCTCATCAGCGACCGGATCGGCCGCAAGCCGATGCTCGTCTTCTTCGGCATCGGCGGCGTCATCTGGACGTACTTCCTGATCACCTACCTGCCCCAGATCCACAGTCCGCTGGGGTCCTGGGCACTCGTCGCCGTCGGCTACGTCATCCTCACCGGTTACACGTCGATCAACGCGATCGTCAAGGCCGAGCTGTTCCCCGTCCGTGTGCGTGCCCTGGGTGTCGGCGTCGGCTATGCACTGGCCAACTCGGTCTTCGGTGGCACGGCTCCGGTCATCTACGAAGCCGCGAAGAAGAGCGACCACGTCACGGCGTTCATCGTCTACGTCACGCTCTGCATCGCTGCGTCCCTGCTCGTCTACATCTTCGTGCTGCGCAACAAGAGCGAGACCGAGCTCGACCGCGAGCAGGGTCACGCCTACGCCTCCCAGAAGGCCTGA > 614 mma_2481 NA major_facilitator_superfamily_sugar_transporter YP_001354171.1 11 MTAASITSTEADVFTAKEERQVVLASTLGTIFEWYDFFIYGSLAIFMSSVLFPPDNPTAALLASLGALAAGFVIRPIGAVLFGYLGDRLGRKHTFLLTIIMMGGSTALIGFLPSYASVGHAAWISLVVLRLVQGLAVGGEYGGAVIYVAEHSRPSRRGLLTGWIQITSSMGLILSIAVILGTQATMDMASFKEWGWRVPFIISIAMLIFSVYVRAKLHESPVFTRLKAQGRLSKNPVRDTFFKWPSLKMILLALFGVTAGQGATYFTGQFYVMIFLQQAVMLDQRTVYTLICIGFLIGAPAFVFFGWLSDRLGRKWIMMAGLFIAALCYRPMFASLLEAGNPALAAATLSTPVTVHANAKDGACSFSIGASFVSAHPDHAKPCVQAKKMLVGNGINFEYAEPIAGQAVAMSVKGQTINGFDAKAYRAALTEAGYPAKADPEQVNKGRILLLLVLMTVVVAMVYGPVAAYLVELFPPNIRYTALSFPYHIGAGIFGGFLPFCATYLALAGGNIFAGLWYPVVITAVTGIIGSLLLPNTKTAVKDI beta_subgroup Janthinobacterium_sp._Marseille Janthinobacterium_sp._Marseille NC_009659 2806593..2808227 Audic,S.,_Robert,C.,_Campagna,B.,_Parinello,H.,_Claverie,J.M.,_Raoult,D._and_Drancourt,M. NA 0:1635 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000269.Source_DNA_and_bacteria_available_from_Michel_Drancourt(Michel.Drancourt@medecine.univ-mrs.fr).Name:_M.massiliensis.COMPLETENESS:_full_length. NA 25-JAN-2012 Janthinobacterium_sp._Marseille_chromosome,_complete_genome. NA Oxalobacteraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Janthinobacterium_sp_A6T0X4_JANMA.gb Janthinobacterium_De_Ley_et_al._1978_(Approved_List_1980)_emend._Lincoln_et_al._1999 152979768 PLoS_Genet._3_(8),_E138_(2007) NA NC_009659 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 17722982 1635 NA genomic_DNA NA Marseille NA Minibacterium_massiliensis NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 375286 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Oxalobacteraceae,_Janthinobacterium Genome_analysis_of_Minibacterium_massiliensis_highlights_the_convergent_evolution_of_water-living_bacteria NA NC_009659.1 TTAAATGTCTTTGACTGCAGTTTTTGTATTTGGCAGCAGCAAGCTGCCGATAATACCGGTCACCGCTGTAATCACCACCGGATACCAGAGCCCGGCAAATATATTGCCGCCGGCCAGTGCCAGATAGGTTGCACAGAAAGGCAGAAAGCCACCGAAGATACCGGCACCGATGTGATACGGGAAGGACAAGGCGGTGTAGCGGATATTCGGCGGGAACAATTCCACCAGGTAGGCCGCCACCGGACCGTACACCATCGCCACCACCACCGTCATCAAGACCAGCAACAACAGGATGCGGCCTTTATTGACTTGCTCGGGATCGGCCTTGGCCGGATAACCGGCTTCCGTCAGTGCCGCACGATAAGCTTTGGCGTCAAAACCGTTAATGGTTTGTCCCTTGACGCTCATCGCGACAGCTTGTCCGGCAATCGGCTCCGCGTATTCAAAGTTGATGCCGTTACCGACCAGCATTTTCTTCGCCTGCACACATGGCTTGGCATGGTCAGGATGTGCACTGACAAAGGATGCACCTATGCTGAAACTACATGCACCATCCTTGGCGTTCGCATGTACCGTGACAGGCGTCGACAGCGTTGCTGCAGCCAGCGCCGGATTACCCGCTTCCAGCAGGGAAGCAAACATCGGGCGATAACAGAGTGCCGCAATGAACAGGCCTGCCATCATGATCCACTTGCGTCCGAGGCGATCGGACAACCAGCCGAAGAATACAAAAGCAGGTGCGCCTATCAGGAAGCCGATGCAAATCAGCGTGTACACGGTACGCTGGTCCAGCATCACCGCTTGCTGCAGGAAGATCATCACGTAGAACTGGCCGGTAAAGTAAGTTGCGCCCTGGCCTGCAGTCACACCGAACAAAGCCAGCAAGATCATTTTCAGGCTGGGCCATTTGAAGAAAGTGTCGCGCACCGGATTCTTCGACAGGCGTCCTTGCGCTTTCAGGCGTGTGAACACCGGTGATTCATGCAGCTTGGCACGGACATATACCGAGAAAATCAGCATTGCAATCGAGATGATGAAAGGAACGCGCCAGCCCCATTCCTTGAACGAAGCCATATCCATCGTGGCCTGGGTACCGAGGATCACGGCGATTGAGAGGATCAAGCCCATCGACGATGTAATCTGGATCCAGCCGGTCAGCAAACCACGGCGTGACGGACGCGAGTGTTCGGCCACATAAATCACCGCACCACCATATTCACCACCGACTGCCAGGCCCTGGACCAGGCGCAGCACCACCAGCGAGATCCATGCAGCGTGGCCGACCGACGCATAACTCGGCAGGAAACCGATCAGTGCGGTACTGCCACCCATCATGATGATGGTCAGCAGGAAGGTGTGTTTGCGGCCGAGGCGGTCGCCCAGGTAACCGAACAACACCGCACCGATAGGACGAATCACGAAACCTGCAGCCAGTGCACCCAGCGATGCCAGCAAGGCAGCGGTCGGATTATCAGGCGGGAACAGGACCGAACTCATGAAGATCGCGAGCGAGCCATAAATGAAAAAGTCATACCACTCAAAGATGGTGCCCAAGGTTGAAGCGAGTACGACCTGACGCTCTTCCTTGGCAGTAAATACGTCTGCCTCAGTACTGGTTATAGATGCTGCAGTCAT > 615 Krad_4061 TIGRFAM:_sugar_transporter;_PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_aau:AAur_1368_sugar_MFS_transporter sugar_transporter YP_001363788.1 11 MSTTPGRSAAPGGGVHDALPPLTDGPHRRRLGVVALIATFGGLLFGYDTSVINGALEPMVRELGLTTLTEGVVTSSLLFGAAVGAISGGRLSDAWGRRRSILLMSLFFFGGALVCVFTPNFEVMVVGRVVLGLAVGAASTVVPVYLAEMAPYEIRGSLSGRNEMMIVVGQLAAFVVNAIVGNVWGEHAGVWRIMLAFVTLPAVALFVGMLRVPESPRWLIDHGHYDEALAVLRTLRSEERAEAEARQIAGLTHEDSKRVPMDWRSVLSHRWLRRILLIGTGLGVAQQLTGINSIMYYGQSILGEAGFSSSAALIANVAPGVIAVVGAFIALRIMDTFSRRRTFVLGYSLTTACHLLIGIGSVLLPVGNPLRPWVILFLVVAFVGSMQTFLNVATWVTLSEIFPQRMRAFGMGTSVFVLWITNALLGLWFPTLVSALGITGCFFGFAVVNLLALVFVKTQVPETRGRSLEQLEEAVTSGAIHDRAVRDGLA high_GC_Gram+ Kineococcus_radiotolerans_SRS30216 Kineococcus_radiotolerans_SRS30216 NC_009664 2823621..2825093 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Saunders,E.,_Brettin,T.,_Bruce,D.,_Detter,J.C.,_Han,C.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Bagwell,C.E.,_Shimkets,L.,_Berry,C.J.,_Fliermans,C._and_Richardson,P. NA 0:1473 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP000750.On_Aug_14,_2009_this_sequence_version_replaced_gi:152963972.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3436090Source_DNA_and_bacteria_available_from_Christopher_E._Bagwell(christopher.bagwell@srnl.doe.gov)Contacts:_Christopher_E._Bagwell_(christopher.bagwell@srnl.doe.gov)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)Additional_Notes:_Kineococcus_radiotolerans_SRS30216_has_3replicons,_a_chromosome_and_two_plasmids._The_chromosome_and_thelargest_plasmid,_plasmid_1,_both_appear_to_be_linear._We_haveperformed_various_pcr_reactions_in_an_attempt_to_circularize_them.None_have_succeeded.COMPLETENESS:_full_length. NA 21-JAN-2012 Kineococcus_radiotolerans_SRS30216_chromosome,_complete_genome. NA Kinerosporia_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Kineococcus_radiotolerans_A6WFD5_KINRD.gb Kineococcus_Yokota_et_al._1993 255961475 Unpublished NA NC_009664 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1473 NA genomic_DNA NA SRS30216 NA Kineococcus_radiotolerans_Phillips_et_al._2002 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Kineosporiineae_Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 266940 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Kineosporiineae,_Kineosporiaceae,_Kineococcus Complete_sequence_of_chromosome_of_Kineococcus_radiotolerans_SRS30216 NA NC_009664.2 ATGTCGACCACCCCGGGCCGGTCCGCCGCACCCGGAGGGGGTGTGCACGACGCGCTGCCGCCCCTGACCGACGGCCCCCACCGCAGGCGGCTGGGCGTCGTCGCCCTCATCGCGACCTTCGGGGGGCTGCTCTTCGGCTACGACACCAGCGTCATCAACGGCGCCCTCGAACCGATGGTCCGGGAACTCGGCCTCACCACCCTCACCGAGGGCGTCGTGACGAGCTCGCTGCTCTTCGGCGCCGCCGTCGGCGCGATCAGCGGCGGACGCCTCTCCGACGCCTGGGGCCGGCGGCGGTCCATCCTGCTCATGTCGCTGTTCTTCTTCGGCGGCGCCCTGGTCTGCGTCTTCACCCCGAACTTCGAGGTCATGGTCGTCGGCCGCGTCGTCCTCGGCCTCGCCGTCGGCGCCGCCTCGACCGTCGTGCCGGTCTACCTCGCCGAGATGGCGCCCTACGAGATCCGCGGGTCGCTCTCGGGGCGCAACGAGATGATGATCGTCGTCGGCCAGCTCGCGGCCTTCGTCGTCAACGCGATCGTCGGCAACGTCTGGGGCGAGCACGCCGGGGTCTGGCGCATCATGCTGGCCTTCGTGACGCTGCCCGCCGTCGCCCTGTTCGTCGGGATGCTGCGGGTGCCGGAGTCCCCGCGCTGGCTGATCGACCACGGCCACTACGACGAGGCGCTCGCGGTGCTGCGGACCCTGCGCTCGGAGGAGCGCGCGGAGGCGGAGGCGCGCCAGATCGCCGGGCTGACCCACGAGGACTCCAAGCGGGTCCCGATGGACTGGCGCAGCGTCCTGTCCCACCGGTGGCTGCGGCGCATCCTGCTGATCGGCACCGGCCTGGGGGTCGCCCAGCAGCTGACCGGGATCAACTCGATCATGTACTACGGGCAGTCCATCCTCGGCGAGGCCGGGTTCTCCTCCAGCGCGGCCCTCATCGCCAACGTCGCCCCCGGGGTCATCGCGGTCGTCGGCGCGTTCATCGCGCTGCGGATCATGGACACCTTCAGCCGCCGCCGGACGTTCGTCCTCGGCTACTCGCTGACGACCGCCTGCCACCTGCTCATCGGGATCGGCTCCGTGCTCCTCCCCGTGGGCAACCCGTTGCGCCCGTGGGTGATCCTCTTCCTCGTCGTGGCCTTCGTCGGGTCCATGCAGACCTTCCTCAACGTGGCGACGTGGGTGACGCTGTCGGAGATCTTCCCGCAGCGGATGCGGGCGTTCGGCATGGGGACCTCGGTGTTCGTCCTGTGGATCACCAACGCCCTGCTGGGCCTGTGGTTCCCGACGCTGGTGAGCGCGCTCGGCATCACCGGCTGCTTCTTCGGGTTCGCCGTGGTCAACCTGCTGGCGCTGGTGTTCGTGAAGACCCAGGTCCCCGAGACCCGCGGGCGCTCCCTGGAGCAGCTGGAGGAGGCCGTCACCAGCGGCGCGATCCACGACCGGGCCGTGCGCGACGGCCTCGCCTGA > 616 KSE_07760 NA putative_major_facilitator_superfamily_transporter BAJ26615.1 11 MVNSTLAGNDTPPAPRPAALRRVVAASLIGTTIEWYDYFLYGSAAALVFGHVFFPKADPLTGTLLSFLTYAIGFAARPLGALVFGHFGDRIGRKKLLVLSLLLMGGATALIGCVPGYDSIGVAAPVILTFLRLVQGFALGGEWGGAVLLVSEHGDPERRGFWASWPQGGAPAGNLLAVGVLDLMTFVQSDEQFLAWGWRVPFLLSAVLVMVGLWIRLAVDESPVFQDALAKAEARKAEATRAAEAARAAEATRGAGQGKAEQPPLLAVLRHHWREVLVAMGARMAENISYYVLTTFVLAYCVGHLKLDKQTALNAVLIASAVQFALIPLFGALSDRVGRRPVYLAGAAGVGVWAWAFFGLLDTRSFPLILLAVTVGLVFHSAMYAPQAAFFSEMFATRMRYSGASIGAQFASVAAGAPAPLIATALLKDYGGSTPISVYVTLAAVVTLVAVLCARETRGRDLAALDADGTDPAAGTDGAAAAKAARV high_GC_Gram+ Kitasatospora_setae_KM-6054 Kitasatospora_setae_KM-6054 AP010968 854315..855778 Ichikawa,N.,_Oguchi,A.,_Ikeda,H.,_Ishikawa,J.,_Kitani,S.,_Watanabe,Y.,_Nakamura,S.,_Katano,Y.,_Kishi,E.,_Sasagawa,M.,_Ankai,A.,_Fukui,S.,_Hashimoto,Y.,_Kamata,S.,_Otoguro,M.,_Tanikawa,S.,_Nihira,T.,_Horinouchi,S.,_Ohnishi,Y.,_Hayakawa,M.,_Kuzuyama,T.,_Arisawa,A.,_Nomoto,F.,_Miura,H.,_Takahashi,Y._and_Fujita,N. NA 0:1464 Otoguro,_M._is_at_NITE_Biological_Resource_Center_(NBRC)._Ikeda,H.,_Miura,_H._and_Takahashi_Y._are_at_Kitasato_Institute_for_LifeScience._Ishikawa,_J._is_at_National_Institute_of_InfectiousDiseases._Horinouchi,_S.,_Ohnishi,_Y._and_Kuzuyama,_T._are_at_TheUniversity_of_Tokyo._Hayakawa,_M._is_at_University_of_Yamanashi.Nihira,_T._and_Kitani,_S._are_at_Osaka_University._Arisawa_A._is_atMercian_Corp._Nomoto_F._is_at_Nagase_&_Co._Ltd._The_other_authorsare_at_NITE_Genome_Analysis_Center_(NGAC).Please_visit_our_web_site._URL:http://www.bio.nite.go.jp/DOGAN_;_Database_of_Genomes_Analyzed_at_NITE._The_database_containsgenome_sequence_data,_physical_maps_and_the_genomic_and_proteomicdata_of_the_microorganisms_analyzed.URL:http://www.bio.nite.go.jp/dogan/TopThe_microbial_strain_and_microbial_genomic_DNA_clones_used_for_thesequencing_project_are_available_through_the_NBRC.URL:http://www.nbrc.nite.go.jp/e/index.html. NA 23-DEC-2011 Kitasatospora_setae_KM-6054_DNA,_complete_genome. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Kitasatospora_setae_E4N5Y4_KITSK.gb Kitasatosporia 311893446 DNA_Res._17_(6),_393-406_(2010) NA AP010968 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 21059706 1464 NA genomic_DNA NA KM-6054 NA Streptomyces_setae_(Omura_et_al._1983)_Wellington_et_al._1992 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 452652 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Kitasatospora Genome_sequence_of_Kitasatospora_setae_NBRC_14216T:_an_evolutionary_snapshot_of_the_family_Streptomycetaceae NA AP010968.1 CTAGACGCGGGCCGCCTTCGCCGCGGCGGCTCCGTCCGTTCCGGCCGCCGGGTCCGTCCCGTCCGCGTCCAGGGCGGCGAGGTCGCGGCCGCGGGTCTCGCGGGCGCAGAGCACGGCGACCAGGGTGACGACGGCGGCGAGGGTGACGTACACCGAGATCGGAGTGGAGCCGCCGTAGTCCTTCAGCAGCGCGGTGGCGATCAGCGGCGCGGGCGCGCCGGCCGCGACGGAGGCGAACTGGGCGCCGATCGAGGCCCCGGAGTAGCGCATCCGGGTCGCGAACATCTCGGAGAAGAACGCGGCCTGCGGCGCGTACATCGCGCTGTGGAAGACCAGGCCGACGGTGACCGCCAGCAGGATCAGCGGGAACGACCTGGTGTCCAGCAGCCCGAAGAAGGCCCACGCCCACACCCCGACGCCCGCGGCCCCGGCCAGGTAGACCGGCCGGCGGCCGACCCGGTCGGAGAGCGCGCCGAACAGCGGGATCAGCGCGAACTGCACGGCGGAGGCGATCAGTACGGCGTTCAGCGCGGTCTGCTTGTCGAGCTTGAGGTGGCCCACGCAGTACGCCAGCACGAAGGTGGTCAGCACGTAGTACGAGATGTTCTCGGCCATCCGGGCGCCCATCGCGACCAGCACCTCGCGCCAGTGGTGGCGCAGCACGGCCAGCAGCGGCGGCTGCTCGGCCTTCCCCTGCCCCGCCCCGCGAGTCGCCTCCGCCGCGCGGGCCGCCTCCGCCGCGCGGGTCGCCTCCGCCTTGCGGGCCTCGGCCTTGGCGAGGGCGTCCTGGAAGACCGGGGACTCGTCGACGGCGAGCCGGATCCACAGGCCGACCATCACCAGCACCGCGGAGAGCAGGAACGGGACGCGCCAGCCCCAGGCGAGGAACTGCTCGTCGCTCTGGACGAAGGTCATCAGGTCGAGCACGCCGACCGCCAGCAGGTTGCCGGCCGGGGCGCCGCCCTGCGGCCAGGACGCCCAGAAGCCGCGCCGCTCCGGGTCGCCGTGCTCGGAGACCAGCAGCACCGCGCCGCCCCACTCGCCGCCCAGCGCGAAGCCCTGCACCAGGCGCAGGAAGGTCAGGATGACCGGCGCCGCGACGCCGATGCTGTCGTAGCCCGGGACGCAGCCGATCAGCGCGGTCGCGCCGCCCATCAGCAGCAGGCTCAGCACCAGCAGCTTCTTGCGGCCGATCCGGTCGCCGAAGTGGCCGAACACCAGGGCGCCGAGCGGGCGGGCGGCGAAGCCGATCGCGTAGGTGAGGAAGGAGAGCAGGGTGCCGGTCAGCGGGTCGGCCTTCGGGAAGAACACGTGCCCGAAGACCAGGGCCGCGGCCGAGCCGTACAGGAAGTAGTCGTACCACTCGATGGTGGTGCCGATCAGCGAGGCCGCCACGACCCGGCGCAGCGCCGCCGGTCGGGGAGCGGGGGGCGTGTCGTTCCCGGCGAGGGTGGAGTTGACCAT > 617 KPN_03264 NA low-affinity_L-arabinose_transport_system_proton_symport_protein YP_001336892.1 11 MNWFVSIAAAVAGLLFGLDIGVISGALPFITDHFTLSSQLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAVLFVAGSIGSAFAASVEVLLVARVVLGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVILIILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKARDELNEIRESLKLKQGGWALFKVNRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDAIGAAGTFWLYTALNVAFIGITFWLIPETKNVTLEHIERNLMAGEKLRNIGNR gamma_subgroup Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 NC_009648 3583569..3584930 NA NA 0:1362 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000647.Coding_sequences_below_are_predicted_from_manually_evaluatedcomputer_analysis,_using_similarity_information_and_the_programGeneMark_(version_2.3);_tRNA_genes_were_determined_usingtRNAscan-SE-1.23;_This_sequence_was_finished_as_follows_unlessotherwise_noted:_all_regions_were_double_stranded,_sequenced_withan_alternate_chemistries_or_covered_by_high_quality_data_(i.e.,phred_quality_>=30);_an_attempt_was_made_to_resolve_all_sequencingproblems,_such_as_compressions_and_repeats;_all_regions_werecovered_by_sequence_from_more_than_one_m13_subclone.COMPLETENESS:_full_length. NA 07-DEC-2011 Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Klebsiella_pneumoniae_A6TDJ1_KLEP7.gb Klebsiella_Trevisan_1885_(Approved_Lists_1980)_emend._Drancourt_et_al._2001 152968582 Submitted_(09-JUL-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_009648 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1362 NA genomic_DNA NA ATCC_700721;_MGH_78578 NA Klebsiella_sp._M-AI-2 NA complement NA NA NA NA NA NA Klebsiella_pneumoniae_subsp._pneumoniae_(Schroeter_1886)_Trevisan_1887 NA NA NA prokaryotes NA 272620 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Klebsiella Direct_Submission NA NC_009648.1 TTAACGATTACCGATGTTGCGCAGCTTCTCGCCCGCCATCAGGTTGCGCTCAATGTGCTCGAGGGTGACATTCTTGGTTTCCGGGATCAGCCAGAAGGTGATGCCGATAAAGGCCACGTTGAGCGCCGTGTAGAGCCAGAAGGTGCCGGCGGCGCCAATCGCGTCAAGCAGCGTCAGGAAAGTGGCGCCGATGATCATGTTCGACACCCAGTTGGTGGTGGTCGAGCAGGTGATACCGAAGTCGCGGCATTTTAGCGGCTGGATCTCGGAGCAGAGGATCCACACCACCGGCGCCGCGCTCATCGCATACCCGGCAATACACATCATGGTCATGCCGACGGAGAGCCAGGAGAGGCCGCTGGATGCGGTGCCATTGTCGAACTGCATCAGGCAGTAGCCCAGCACCAGAGTGCCCAGCGCCATCACGCTAAAGCCGATTTTCAGCGCTGGCTTGCGGCCCGCTTTATCCACTGTGAACACCGCAATAAAGGTGGCAAACATAAAGGTCAGGCCCACCACCAGGGTGGCGATCATCTGCTGTTCAGTAGTGGTAAAGCCCGCCATTTTAAAGATACGCGGCGCATAGTACATGATGATGTTCATGCCGGTGAATTGCTGCATCGCCTGCAGCAGCATGCCCAGGAACACCGCCCGGCGCACGTTACGATTGACCTTAAACAACGCCCAACCGCCCTGCTTCAGCTTGAGGCTCTCACGGATCTCGTTAAGCTCGTCGCGCGCCTTTTCCGAAGTATCGCGCAGCATCCGCAGCACTTCTTCCGCTTCGATATGGCGTCCCTTCTCCGCCAGCCAGCGCGGGCTGTTCGGCAAAAAGACGACCAGAATGATCAGAATCACCGCCGGCAGCGCCAGCACGCCCAGCATGGCGCGCCAGTTACCGCTGTAGCTAAAGGCGGTATCGGAAAGAAACGCCAGCACAATGCCAAGGGTGACCATCAGCTGATACATACTGATCATTTTCCCGCGCACGTTCTCGCTGGCCATCTCGGAGAGGTACAGCGGCGCGGTATAAGAGGCAATCCCGACTGCCACGCCCAGCACCACGCGGGCCACCAGCAGCACCTCCACGCTGGCGGCAAAAGCGGATCCGATAGAGCCGGCCACAAAGAGTACGGCCCCCGCCATCAGGCTGTATTTACGACCAAGGCGGAACGACAGCCAGCCGTTAAACAGCGCGCCTATCGCCGCCCCCAACATCATGCTGCTAACCACCCACTCCTGAAGCTGGCTGGATAAGGTGAAATGGTCGGTTATAAAGGGCAACGCTCCGGATATCACGCCGATATCCAGGCCAAAGAGCAAGCCCGCCACCGCCGCGGCGATGGAAACAAACCAGTTCAT > 618 KPK_0233 Similarity_to_Escherichia_coli_yhjE;_identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 MFS_transporter_metabolite:H+_symporter_(MHS)_family_protein YP_002236115.1 11 MQATATTLENSQETAPVNSRNKVVVASLIGTAIEFFDFYIYATAAVIVFPHIFFPQGDAAAATLQSLATFAIAFVARPIGSALFGHFGDRVGRKVTLVASLLTMGISTVVIGLLPGYESIGIVAPMLLALARFGQGLGLGGEWGGAALLATENAPARKRALYGSFPQLGAPIGFFFANGTFLLLSWLLTDQQFMEWGWRVPFIFSAVLVIIGLYVRVSLHETPVFAKVAAAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFSTGTAPNGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMIVITTMIILFALFAFKPLLGSGNPLLVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSILGASVAPYIAAWLQGNYGLAAVGTYLAAMAALTLIALLLTHETRHQSL gamma_subgroup Klebsiella_pneumoniae_342 Klebsiella_pneumoniae_342 NC_011283 255558..256880 Fouts,D.E.,_Tyler,H.L.,_DeBoy,R.T.,_Daugherty,S.,_Ren,Q.,_Badger,J.H.,_Durkin,A.S.,_Huot,H.,_Shrivastava,S.,_Kothari,S.,_Dodson,R.J.,_Mohamoud,Y.,_Khouri,H.,_Roesch,L.F.,_Krogfelt,K.A.,_Struve,C.,_Triplett,E.W._and_Methe,B.A. NA 0:1323 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000964.The_source_for_the_DNA_and/or_cells_is:_Professor_Eric_W.Triplett,_Chair,_Department_of_Microbiology_and_Cell_Science,Institute_of_Food_and_Agricultural_Sciences,_University_of_Florida,P.O._Box_110700,_Gainesville,_FL_32611-0700,_ewt@ufl.edu.COMPLETENESS:_full_length. NA 27-JAN-2012 Klebsiella_pneumoniae_342_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Klebsiella_pneumoniae_B5XN35_KLEP3.gb Klebsiella_Trevisan_1885_(Approved_Lists_1980)_emend._Drancourt_et_al._2001 206575712 PLoS_Genet._4_(7),_E1000141_(2008) NA NC_011283 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18654632 1323 NA genomic_DNA NA 342 NA Klebsiella_sp._M-AI-2 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 507522 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Klebsiella Complete_genome_sequence_of_the_N2-fixing_broad_host_range_endophyte_Klebsiella_pneumoniae_342_and_virulence_predictions_verified_in_mice NA NC_011283.1 TCACAACGACTGGTGGCGGGTCTCGTGGGTCAGCAGCAGGGCGATCAGCGTCAGCGCCGCCATCGCCGCCAGATAGGTGCCGACCGCCGCCAGGCCGTAGTTGCCCTGCAGCCAGGCGGCAATGTACGGCGCGACCGAGGCGCCGAGAATCGACGACACGTTATAGGAGAACGACGCGCCGGTGTAGCGCACTTCCGTGGGGAACAGCTCCGGGAGCAGCGCGCCCATCGGGCCAAAAGTCAGTCCCATCAGGCTTAAGCCCAGCAGCAGGAAGGCGAAGACCAGCAGCGGGTTACCGGAACCCAGCAGCGGTTTAAAAGCGAACAGGGCGAACAAAATAATCATCGTGGTGATGACAATCATGCTCTTGCGACGGCCAAAGGCGTCCGCCAGCAGGCCGGCGACAGGCACCATCACGCCGAAGCCAATCACCGCCATCATCAGCATCCACAGCACTTCGTTACGCGGCAGGCCCAGGCCATTCGGCGCGGTGCCGGTGCTGAAGGTCATCGAGTAGACGGTCATGATGTAGAACAGGGTATAGGTTGCCAGCATGATGAAGGTGCCCAGCACCGTCACGCGGACGTGTTTGGTCAACAGGGTACCCAGCGGGATTTTGACCTGTTTTTTCGCCGCTGCCACTTTGGCGAAGACCGGCGTTTCGTGCAGCGAGACGCGCACGTACAGACCGATGATCACCAGCACCGCGGAGAAGATAAACGGCACGCGCCAGCCCCACTCCATAAACTGCTGATCGGTTAACAGCCAGGAGAGCAGCAGGAAGGTGCCGTTGGCGAAGAAGAAGCCGATCGGCGCGCCCAGCTGCGGGAAGGAGCCGTACAGGGCGCGCTTGCGCGCCGGGGCGTTTTCCGTTGCCAGCAGCGCTGCGCCGCCCCATTCCCCTCCGAGGCCAAGCCCCTGACCGAAGCGCGCCAGCGCCAGCAGCATCGGCGCGACAATGCCAATGCTTTCATAGCCGGGCAGCAGGCCGATCACCACGGTGGAGATCCCCATGGTTAACAGCGAGGCCACGAGAGTGACCTTGCGGCCGACGCGATCGCCAAAGTGACCAAACAGCGCGGAGCCGATCGGCCGGGCGACGAAGGCGATGGCGAAGGTGGCCAGCGACTGCAGGGTGGCCGCGGCGGCATCGCCCTGCGGGAAAAAGATATGCGGGAAGACGATGACCGCGGCAGTGGCATAGATGTAGAAGTCGAAAAACTCAATGGCGGTGCCAATGAGCGAGGCGACAACGACTTTGTTGCGTGAATTGACCGGGGCGGTTTCCTGCGAGTTTTCGAGTGTGGTGGCTGTGGCTTGCAT > 619 KPK_1211 identified_by_similarity_to_SP:P0AEX3;_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 alpha-ketoglutarate_transporter YP_002237071.1 11 MTESSITERGAPDQADTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADRRGRKASMLISVCMMCFGSLVIACLPGYAVIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGKKGFYASFQYVTLIGGQLLAVLVVVALQQVLSDEDLHAWGWRIPFALGAVLAIVALWLRRQLDETSKQETRALKEAGSFKGLWRNRRAFVMVLGFTAAGSLTFYTFTTYMQKYLVNTAGMTASTASVIMTAALFVYMLVQPLFGAFSDKVGRRTSMLCFGVLATLFTVPILSALQKVSSPYAAFGLVICALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSAGIEHAFYWYVTVMAAIAFLVSLMLHRKGKGLRL gamma_subgroup Klebsiella_pneumoniae_342 Klebsiella_pneumoniae_342 NC_011283 1228556..1229854 Fouts,D.E.,_Tyler,H.L.,_DeBoy,R.T.,_Daugherty,S.,_Ren,Q.,_Badger,J.H.,_Durkin,A.S.,_Huot,H.,_Shrivastava,S.,_Kothari,S.,_Dodson,R.J.,_Mohamoud,Y.,_Khouri,H.,_Roesch,L.F.,_Krogfelt,K.A.,_Struve,C.,_Triplett,E.W._and_Methe,B.A. NA 0:1299 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000964.The_source_for_the_DNA_and/or_cells_is:_Professor_Eric_W.Triplett,_Chair,_Department_of_Microbiology_and_Cell_Science,Institute_of_Food_and_Agricultural_Sciences,_University_of_Florida,P.O._Box_110700,_Gainesville,_FL_32611-0700,_ewt@ufl.edu.COMPLETENESS:_full_length. NA 27-JAN-2012 Klebsiella_pneumoniae_342_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Klebsiella_pneumoniae_B5XVM2_KLEP3.gb Klebsiella_Trevisan_1885_(Approved_Lists_1980)_emend._Drancourt_et_al._2001 206575712 PLoS_Genet._4_(7),_E1000141_(2008) NA NC_011283 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18654632 1299 NA genomic_DNA NA 342 NA Klebsiella_sp._M-AI-2 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 507522 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Klebsiella Complete_genome_sequence_of_the_N2-fixing_broad_host_range_endophyte_Klebsiella_pneumoniae_342_and_virulence_predictions_verified_in_mice NA NC_011283.1 ATGACAGAAAGTAGCATTACCGAACGGGGCGCGCCGGATCAGGCCGATACCCGTCGTCGTATTTGGGCAATAGTTGGCGCTTCCTCGGGGAATCTGGTTGAGTGGTTTGATTTTTACGTTTATTCATTCTGCTCGCTCTATTTCGCCCATATCTTTTTTCCATCTGGCAATACCACCACCCAACTGCTGCAGACGGCAGGCGTATTTGCCGCCGGATTCCTGATGCGTCCCATCGGCGGATGGCTGTTTGGTCGAATCGCCGACCGCCGCGGACGTAAAGCCTCCATGCTTATCTCGGTGTGCATGATGTGCTTTGGCTCACTGGTGATTGCCTGTCTGCCGGGTTATGCGGTCATCGGCACCTGGGCCCCGGCGCTGCTGCTGCTGGCGCGTCTGTTCCAGGGGCTGTCTGTTGGCGGAGAATACGGCACCAGTGCGACCTATATGAGTGAAGTCGCGGTGGAAGGTAAGAAAGGCTTCTATGCCTCCTTCCAGTACGTTACGCTGATTGGCGGTCAACTGCTGGCGGTATTAGTGGTTGTCGCGCTCCAGCAGGTGCTCAGCGATGAAGATCTCCATGCCTGGGGATGGCGTATTCCTTTTGCTCTTGGGGCGGTACTGGCTATCGTCGCGCTGTGGCTGCGTCGCCAGCTGGACGAAACCTCAAAGCAGGAGACCCGGGCGCTGAAAGAGGCTGGATCATTTAAAGGGTTGTGGCGCAATCGCCGGGCCTTCGTGATGGTGTTGGGCTTTACCGCCGCCGGATCGCTGACCTTCTACACCTTTACTACCTATATGCAAAAGTATCTGGTCAACACGGCGGGCATGACGGCTAGCACCGCCAGCGTGATCATGACCGCGGCGCTATTCGTTTATATGCTGGTTCAGCCGCTGTTCGGCGCCTTTTCGGATAAAGTTGGCCGTCGCACCTCCATGCTGTGCTTTGGCGTGCTGGCGACGTTATTTACCGTGCCTATTCTCAGTGCTCTGCAGAAGGTGAGCTCACCGTATGCCGCCTTCGGACTGGTGATCTGCGCCTTGCTGATCGTCAGTTTCTATACCTCTATCAGCGGCATCCTGAAAGCAGAGATGTTCCCGGCTCAGGTCCGCGCGCTTGGGGTAGGGCTTTCCTATGCCGTCGCGAACGCGCTGTTCGGCGGCTCTGCGGAGTATGTCGCGCTGTCGCTTAAGTCGGCGGGGATAGAGCACGCGTTCTACTGGTATGTGACGGTGATGGCGGCTATCGCCTTCCTGGTTTCCCTGATGCTGCATCGCAAGGGAAAAGGCCTGCGCCTGTGA > 620 KPK_3868 Similarity_to_Klebsiella_pneumoniae_citH;_identified_by_similarity_to_SP:P07661;_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 citrate:proton_symporter YP_002239680.1 11 MTQQPTRAGTVGAILRVTSGNFLEQFDFFLFGFYATYIARTFFPAESEFAALMLTFAVFGSGFLMRPIGAVVLGAYIDRIGRRKGLMVTLAIMGCGTLLIALVPGYQTIGVLAPILVLVGRLLQGFSAGVELGGVSVYLSEIATPGNKGFYTSWQSASQQVAIVMAALIGYALNATLEHEEIAAWGWRIPFFIGCLIIPLIFVLRRSLQETEEFLQRKHRPDTKEILTTIARNWRIITAGTLLVAMTTTTFYFITVYTPTYGRAVLHLSARDSLLVTMLVGISNFIWLPIGGAISDRIGRRPVLMGITVLALLTTWPVMHWLTAAPDFTRMTLVLLWFSFFFGMYNGAMVAALTEVMPVYVRTVGFSLAFSLATAIFGGLTPAISTALVELTGDKSAPGWWLMCAALCGFIATALLFVRLSRGYQPAESQR gamma_subgroup Klebsiella_pneumoniae_342 Klebsiella_pneumoniae_342 NC_011283 3913214..3914509 Fouts,D.E.,_Tyler,H.L.,_DeBoy,R.T.,_Daugherty,S.,_Ren,Q.,_Badger,J.H.,_Durkin,A.S.,_Huot,H.,_Shrivastava,S.,_Kothari,S.,_Dodson,R.J.,_Mohamoud,Y.,_Khouri,H.,_Roesch,L.F.,_Krogfelt,K.A.,_Struve,C.,_Triplett,E.W._and_Methe,B.A. NA 0:1296 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000964.The_source_for_the_DNA_and/or_cells_is:_Professor_Eric_W.Triplett,_Chair,_Department_of_Microbiology_and_Cell_Science,Institute_of_Food_and_Agricultural_Sciences,_University_of_Florida,P.O._Box_110700,_Gainesville,_FL_32611-0700,_ewt@ufl.edu.COMPLETENESS:_full_length. NA 27-JAN-2012 Klebsiella_pneumoniae_342_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Klebsiella_pneumoniae_B5XZG3_KLEP3.gb Klebsiella_Trevisan_1885_(Approved_Lists_1980)_emend._Drancourt_et_al._2001 206575712 PLoS_Genet._4_(7),_E1000141_(2008) NA NC_011283 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18654632 1296 NA genomic_DNA NA 342 NA Klebsiella_sp._M-AI-2 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 507522 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Klebsiella Complete_genome_sequence_of_the_N2-fixing_broad_host_range_endophyte_Klebsiella_pneumoniae_342_and_virulence_predictions_verified_in_mice NA NC_011283.1 ATGACCCAACAACCCACCCGCGCCGGCACCGTCGGCGCTATCCTCCGCGTGACCAGCGGTAATTTTCTCGAACAGTTCGACTTCTTCCTGTTTGGCTTTTACGCCACCTATATCGCCCGCACCTTCTTTCCGGCGGAGAGCGAGTTCGCGGCGCTGATGCTCACCTTTGCGGTATTTGGCTCGGGCTTCCTGATGCGTCCCATCGGCGCGGTGGTGCTCGGCGCCTATATCGACAGAATCGGTCGCCGCAAAGGGCTGATGGTCACCCTGGCGATCATGGGCTGCGGGACGCTACTCATCGCCCTGGTCCCTGGCTATCAGACTATCGGTGTGCTGGCGCCGATCCTCGTGTTAGTGGGCCGTCTGCTGCAGGGGTTCTCGGCGGGCGTCGAGCTTGGCGGAGTGTCGGTTTATCTCTCTGAAATCGCCACACCGGGCAATAAAGGCTTCTATACCAGCTGGCAGTCCGCCAGCCAGCAGGTGGCTATCGTCATGGCGGCGCTGATCGGCTATGCGCTGAACGCCACGCTGGAACATGAGGAGATCGCCGCCTGGGGCTGGCGCATCCCCTTCTTTATTGGCTGCCTGATCATTCCGCTGATTTTCGTGCTGCGCCGCTCGCTGCAGGAGACTGAGGAGTTCCTGCAGCGTAAACATCGCCCGGATACTAAAGAGATCCTGACCACTATCGCCAGGAACTGGCGCATTATTACCGCCGGGACGTTGCTGGTGGCGATGACCACCACCACCTTTTATTTTATCACCGTCTATACGCCGACCTACGGCAGAGCGGTGCTGCACCTCAGCGCTCGCGACAGCCTGCTGGTGACCATGCTGGTGGGCATCTCTAACTTTATCTGGTTACCGATTGGCGGGGCGATCTCTGACCGGATCGGTCGTCGCCCGGTGCTGATGGGCATTACCGTGCTGGCGCTGCTCACCACCTGGCCGGTGATGCACTGGCTCACCGCCGCGCCCGATTTCACCCGTATGACGCTGGTCCTGCTGTGGTTCTCGTTCTTTTTTGGCATGTATAACGGCGCGATGGTGGCGGCGCTCACCGAAGTGATGCCGGTGTACGTCCGCACTGTGGGATTCTCTCTGGCCTTTAGTCTCGCTACTGCCATTTTCGGCGGCCTGACGCCGGCTATCTCTACCGCCCTGGTCGAGCTCACCGGCGATAAAAGCGCGCCGGGCTGGTGGCTAATGTGCGCCGCGCTGTGCGGGTTCATTGCCACCGCGCTGCTGTTCGTGCGGCTGAGCCGAGGCTATCAGCCGGCGGAGAGTCAGCGCTAA > 621 KP1_4651 internal_ID:_KP4651 galactose-proton_symport_of_transport_system YP_002921211.1 11 MPDNKKQGRSNKTMTFFVCFLAALAGLLFGLDIGVIAGALPFIANEFQISAHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEILLVSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYSGAWRWMLGVIIIPAVLLLIGVIFLPDSPRWFAAKRRFVDAERVLLRLRDTSAEAKRELDEIRESLKVKQSGWSLFKDNSNFRRAVFLGILLQVMQQFTGMNVIMYYAPKIFELAGYANTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLILGFIVMAAGMGVLGTMMHIGIHSSTAQYIAVLMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNSLGSANTFWVYGGLNVLFILLTLWLIPETKNVSLEHIERNLMQGRPLREIGARD gamma_subgroup Klebsiella_pneumoniae_subsp._pneumoniae_NTUH-K2044 Klebsiella_pneumoniae_subsp._pneumoniae_NTUH-K2044 NC_012731 4455553..4456947 Wu,K.M.,_Li,L.H.,_Yan,J.J.,_Tsao,N.,_Liao,T.L.,_Tsai,H.C.,_Fung,C.P.,_Chen,H.J.,_Liu,Y.M.,_Wang,J.T.,_Fang,C.T.,_Chang,S.C.,_Shu,H.Y.,_Liu,T.T.,_Chen,Y.T.,_Shiau,Y.R.,_Lauderdale,T.L.,_Su,I.J.,_Kirby,R._and_Tsai,S.F. NA 0:1395 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AP006725.This_sequence_was_determined_by_the_K._pneumoniae_Genome_Project_atthe_Yang-Ming_University_VYM_Genome_Research_Center._Funding_tothis_study_were_from_NRPGM_of_R.O.C.COMPLETENESS:_full_length. NA 03-OCT-2011 Klebsiella_pneumoniae_NTUH-K2044_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Klebsiella_pneumoniae_C4WZ35_KLEPN.gb Klebsiella_Trevisan_1885_(Approved_Lists_1980)_emend._Drancourt_et_al._2001 238892256 J._Bacteriol._191_(14),_4492-4501_(2009) NA NC_012731 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19447910 1395 NA genomic_DNA NA NTUH-K2044 NA Klebsiella_sp._M-AI-2 NA forward NA NA NA NA NA NA Klebsiella_pneumoniae_subsp._pneumoniae_(Schroeter_1886)_Trevisan_1887 NA NA NA prokaryotes NA 484021 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Klebsiella Genome_sequencing_and_comparative_analysis_of_Klebsiella_pneumoniae_NTUH-K2044,_a_strain_causing_liver_abscess_and_meningitis NA NC_012731.1 ATGCCTGACAACAAAAAACAAGGGCGTTCGAACAAGACTATGACGTTCTTCGTCTGTTTCCTCGCCGCGCTGGCTGGCCTGCTGTTCGGCCTTGATATCGGTGTTATTGCGGGTGCCTTACCCTTTATTGCCAATGAGTTCCAGATTTCCGCCCACACCCAGGAGTGGGTGGTCAGCTCCATGATGTTCGGAGCTGCCGTCGGCGCGGTCGGCAGCGGCTGGCTCTCTTTCAAACTGGGCCGGAAAAAGAGCCTGATGATCGGCGCCATCCTCTTCGTCGCCGGTTCGCTGTTCTCTGCCGCCGCGCCAAACGTCGAGATCCTGCTGGTTTCCCGTGTGCTGCTCGGCCTGGCGGTGGGCGTCGCCTCATATACGGCTCCGCTGTATCTGTCGGAAATCGCCCCAGAAAAAATTCGCGGCAGTATGATTTCCATGTACCAGCTGATGATCACCATCGGGATCCTTGGCGCCTATCTCTCTGACACCGCTTTCAGCTACAGCGGCGCATGGCGCTGGATGCTCGGGGTTATCATCATTCCGGCGGTATTGCTGCTGATCGGCGTTATCTTCCTGCCGGACAGCCCGCGCTGGTTCGCCGCCAAACGTCGCTTTGTCGATGCGGAACGCGTGCTGCTGCGCCTGCGCGATACCAGCGCCGAAGCGAAACGCGAGCTCGATGAAATCCGTGAAAGCCTGAAGGTAAAACAGTCCGGCTGGTCGCTGTTTAAAGACAACAGCAACTTCCGCCGCGCGGTGTTCCTCGGCATCCTGCTGCAGGTGATGCAACAGTTCACCGGGATGAACGTCATCATGTACTACGCGCCGAAGATCTTTGAGCTGGCGGGTTATGCCAACACCACTGAGCAAATGTGGGGGACAGTGATCGTCGGTCTGACTAACGTGCTGGCCACCTTTATCGCCATCGGTCTGGTCGACCGCTGGGGCCGTAAACCGACGCTGATCCTTGGCTTTATCGTGATGGCCGCGGGTATGGGCGTCCTGGGTACCATGATGCACATCGGCATTCACTCCTCTACCGCCCAGTACATCGCCGTCCTGATGCTGCTGATGTTCATCGTCGGTTTCGCCATGAGCGCCGGCCCGCTGATTTGGGTACTGTGCTCCGAAATCCAGCCGCTGAAAGGCCGCGACTTCGGTATCACCTGCTCCACAGCGACCAACTGGATTGCCAACATGATTGTCGGCGCCACCTTCCTGACCATGCTCAACTCGCTGGGCAGCGCCAATACCTTCTGGGTGTACGGCGGTCTGAACGTGCTGTTTATCCTGCTGACGCTGTGGCTGATCCCGGAAACCAAAAACGTCTCGCTGGAACATATTGAACGTAACCTGATGCAGGGTCGTCCACTGCGCGAGATCGGTGCCCGCGATTAA > 622 KP1_1658 internal_ID:_KP1658 putative_citrate_utilization_protein_A YP_002918468.1 11 MGASAALPAHAPGVTFLIPALSGELIWNFASGAISDRIGRRPVLMGITVLALLTTWPVMHWLTVAPDFTRMTLVLLWFSFFFGMYNGAMVAALTEVMPVYVRTVGFSLAFSLATAIFGGLTPAISTALVELSGDKSAPGWWLMCAAQCGFIATALLFVRLSRGYQPAESQR gamma_subgroup Klebsiella_pneumoniae_subsp._pneumoniae_NTUH-K2044 Klebsiella_pneumoniae_subsp._pneumoniae_NTUH-K2044 NC_012731 1601077..1601592 Wu,K.M.,_Li,L.H.,_Yan,J.J.,_Tsao,N.,_Liao,T.L.,_Tsai,H.C.,_Fung,C.P.,_Chen,H.J.,_Liu,Y.M.,_Wang,J.T.,_Fang,C.T.,_Chang,S.C.,_Shu,H.Y.,_Liu,T.T.,_Chen,Y.T.,_Shiau,Y.R.,_Lauderdale,T.L.,_Su,I.J.,_Kirby,R._and_Tsai,S.F. NA 0:516 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AP006725.This_sequence_was_determined_by_the_K._pneumoniae_Genome_Project_atthe_Yang-Ming_University_VYM_Genome_Research_Center._Funding_tothis_study_were_from_NRPGM_of_R.O.C.COMPLETENESS:_full_length. NA 03-OCT-2011 Klebsiella_pneumoniae_NTUH-K2044_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Klebsiella_pneumoniae_C4X5J3_KLEPN.gb Klebsiella_Trevisan_1885_(Approved_Lists_1980)_emend._Drancourt_et_al._2001 238892256 J._Bacteriol._191_(14),_4492-4501_(2009) NA NC_012731 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19447910 516 NA genomic_DNA NA NTUH-K2044 NA Klebsiella_sp._M-AI-2 NA complement NA NA NA NA NA NA Klebsiella_pneumoniae_subsp._pneumoniae_(Schroeter_1886)_Trevisan_1887 NA NA NA prokaryotes NA 484021 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Klebsiella Genome_sequencing_and_comparative_analysis_of_Klebsiella_pneumoniae_NTUH-K2044,_a_strain_causing_liver_abscess_and_meningitis NA NC_012731.1 TTAGCGCTGACTCTCCGCCGGCTGATAGCCGCGGCTCAGCCGCACGAACAGTAGCGCGGTGGCAATGAATCCGCACTGCGCGGCGCACATTAGCCACCAGCCCGGCGCGCTTTTATCGCCGCTGAGCTCGACCAGGGCGGTGGAAATAGCTGGCGTCAGGCCGCCGAAAATGGCAGTAGCGAGACTAAAGGCCAGCGAAAAGCCCACGGTGCGGACGTATACCGGCATAACTTCGGTAAGCGCCGCGACCATCGCGCCGTTATACATGCCAAAGAAGAACGAGAACCATAGCAGGACCAGCGTCATACGGGTGAAATCGGGCGCGACGGTGAGCCAGTGCATCACCGGCCAGGTGGTGAGCAGCGCCAGCACGGTAATGCCCATCAGCACCGGACGACGACCGATCCGGTCAGAGATCGCCCCGCTGGCGAAGTTCCATATCAACTCTCCGGACAAAGCGGGGATGAGGAAAGTCACCCCAGGGGCGTGAGCGGGAAGGGCGGCAGAGGCGCCCAT > 623 HMPREF0484_2567 COG:_COG0477;_Pfam:_PF07690;_InterPro:_IPR011701 MFS_family_major_facilitator_transporter,_multidrug:cation_symporter_MdtG EEW41404.1 11 MESWKVNLISVWFGCFFTGLAISQILPFLPLYVSQLGVTSHEALSMWSGLTFSVTFLVSAIVSPMWGSLADRKGRKLMLLRASLGMAIAILLQAFATNVWQLFILRAIMGLTSGYIPNAMALVASQVPRERSGWALSTLSTAQISGVIGGPLLGGFLADHVGLRMVFFITAILLTISFLVTLFLIKEGVRPQVSKSERLTGKQVFASLPYPGLVISLFFTTLVIQLCNGSIGPILALFIKSMAPDSNNIAFLAGMIAAVPGVSALISAPRLGKLGDRIGTSRILLATLCCAVVMFFAMSFVTTPLQLGTLRFLLGFADGAMLPAVQTLLLKYSSDSVTGRIFGYNQSFMYLGNVAGPLIGASVSAMAGFRWVFIATAIIVFINLWQLAWMLHQTRRANA gamma_subgroup Klebsiella_pneumoniae_subsp._rhinoscleromatis_ATCC_13884 Klebsiella_pneumoniae_subsp._rhinoscleromatis_ATCC_13884 ACZD01000123 40653..41852 Muzny,D.,_Qin,X.,_Deng,J.,_Jiang,H.,_Liu,Y.,_Qu,J.,_Song,X.-Z.,_Zhang,L.,_Thornton,R.,_Coyle,M.,_Francisco,L.,_Jackson,L.,_Javaid,M.,_Korchina,V.,_Kovar,C.,_Mata,R.,_Mathew,T.,_Ngo,R.,_Nguyen,L.,_Nguyen,N.,_Okwuonu,G.,_Ongeri,F.,_Pham,C.,_Simmons,D.,_Wilczek-Boney,K.,_Hale,W.,_Jakkamsetti,A.,_Pham,P.,_Ruth,R.,_San_Lucas,F.,_Warren,J.,_Zhang,J.,_Zhao,Z.,_Zhou,C.,_Zhu,D.,_Lee,S.,_Bess,C.,_Blankenburg,K.,_Forbes,L.,_Fu,Q.,_Gubbala,S.,_Hirani,K.,_Jayaseelan,J.C.,_Lara,F.,_Munidasa,M.,_Palculict,T.,_Patil,S.,_Pu,L.-L.,_Saada,N.,_Tang,L.,_Weissenberger,G.,_Zhu,Y.,_Hemphill,L.,_Shang,Y.,_Youmans,B.,_Ayvaz,T.,_Ross,M.,_Santibanez,J.,_Aqrawi,P.,_Gross,S.,_Joshi,V.,_Fowler,G.,_Nazareth,L.,_Reid,J.,_Worley,K.,_Petrosino,J.,_Highlander,S._and_Gibbs,R. NA 0:1200 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._The_sequenced_strain_was_obtained_from_ATCC._The_sequencegenerated_included_at_least_10_fold_coverage_of_Roche/454Lifesciences_FLX_fragment_data_and_at_least_8_fold_clone_coverageof_Roche/454_Lifesciences_paired-end_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_to_the_Illumina/Solexa_data_withmapping_tools_such_as_Mosaic_and_Crossmatch_and_these_data_wereused_for_error_correction_for_this_version_of_the_draft_assembly.This_draft_assembly_meets_the_HMP_draft_quality_standards_(morethan_90%_of_the_genome_is_included_in_contigs,_more_than_90%_of_acore_set_of_bacterial_genes_are_found_with_>_30%_identity_and_>_30%length;_more_than_90%_of_the_bases_in_the_assembly_have_more_than_5fold_sequence_coverage,_the_contig_N50_length_is_greater_than_5kb,the_scaffold_N50_length_is_greater_than_20kb,_and_there_is_lessthan_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_21xSequencing_Technology:_454. NA 22-SEP-2009 Klebsiella_pneumoniae_subsp._rhinoscleromatis_ATCC_13884_contig00125,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Klebsiella_pneumoniae_C8T4M5_KLEPR.gb Klebsiella_Trevisan_1885_(Approved_Lists_1980)_emend._Drancourt_et_al._2001 259040251 Submitted_(16-SEP-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACZD01000123 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1200 NA genomic_DNA NA ATCC_13884 NA Klebsiella_sp._M-AI-2 NA forward NA NA NA NA NA NA Klebsiella_rhinoscleromatis_Trevisan_1887_(Approved_Lists_1980) NA NA NA prokaryotes NA 667127 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Klebsiella Direct_Submission NA ACZD01000123.1 ATGGAATCCTGGAAGGTTAATCTCATCTCCGTCTGGTTTGGTTGCTTTTTTACCGGCCTGGCGATCAGTCAAATTCTCCCCTTTTTACCCCTCTACGTCTCCCAGCTCGGCGTCACCTCGCATGAAGCGCTATCGATGTGGTCGGGGCTGACCTTCAGCGTCACTTTTCTTGTCTCGGCGATCGTCTCGCCAATGTGGGGAAGCCTGGCGGACCGTAAAGGCCGCAAGCTCATGCTGCTGCGCGCCTCGTTGGGGATGGCGATTGCCATTTTACTGCAGGCCTTCGCCACCAACGTCTGGCAGCTGTTTATCCTGCGGGCGATCATGGGCTTAACCTCCGGTTATATTCCCAACGCCATGGCGCTGGTGGCCTCCCAGGTGCCGCGCGAGCGCAGCGGCTGGGCGCTAAGCACGCTGTCGACGGCGCAAATTAGCGGGGTGATCGGCGGTCCGCTGCTGGGCGGTTTCCTGGCGGACCACGTCGGGCTGCGGATGGTCTTTTTTATTACGGCGATCCTGCTGACCATCAGTTTTCTGGTGACCCTGTTTCTGATTAAAGAGGGCGTTCGCCCGCAGGTCAGCAAAAGCGAGCGTCTCACCGGGAAACAAGTCTTTGCCTCTTTGCCCTATCCGGGGCTGGTGATCAGCCTGTTCTTCACCACCCTGGTGATCCAATTGTGCAACGGCTCAATCGGCCCGATTCTGGCGCTGTTTATTAAGTCGATGGCGCCGGACAGCAACAATATCGCTTTTCTGGCCGGGATGATCGCCGCGGTGCCCGGCGTGTCGGCACTGATTTCTGCGCCACGGTTGGGTAAGCTTGGCGACCGCATCGGCACCTCGCGGATCCTGCTGGCGACGCTCTGCTGCGCGGTGGTGATGTTCTTCGCCATGTCCTTTGTCACCACCCCGCTGCAATTGGGTACGCTGCGTTTTCTGCTCGGCTTTGCCGATGGCGCGATGCTCCCGGCGGTGCAGACCTTATTGCTGAAGTACAGCAGCGACAGCGTCACCGGGCGTATCTTTGGCTATAACCAGTCGTTTATGTATCTGGGCAACGTCGCCGGGCCGCTAATTGGCGCCTCTGTGTCAGCCATGGCCGGCTTCCGCTGGGTGTTTATTGCCACCGCCATTATCGTTTTCATTAACCTCTGGCAACTAGCGTGGATGCTGCACCAAACCCGCCGGGCTAACGCCTGA > 624 NA unnamed_protein_product;_citrate_carrier_protein_(AA_1-444) NA CAA35844.1 11 MPTARCSMRASSTAPVRMMATAGGARIGAILRVTSGNFLEQFDFFLFGFYATYIAHTFFPASSEFASLMMTFAVFGAGFLMRPIGAIVLGAYIDKVGRRKGLIVTLSIMATGTFLIVLIPSYQTIGLWAPLLVLIGRLLQGFSAGAELGGVSVYLAEIATPGRKGFYTSWQSGSQQVAIMVAAAMGFALNAVLEPSAISDWGWRIPFLFGVLIVPFIFILRRKLEETQEFTARRHHLAMRQVFATLLANWQVVIAGMMMVAMTTTAFYLITVYAPTFGKKVLMLSASDSLLVTLLVAISNFFWLPVGGALSDRFGRRSVLIAMTLLALATAWPALTMLANAPSFLMMLSVLLWLSFIYGMYNGAMIPALTEIMPAEVRVAGFSLAYSLATAVFGGFTPVISTALIEYTGDKASPGYWMSFAAICGLLATCYLYRRSAVALQTAR gamma_subgroup Klebsiella_pneumoniae Klebsiella_pneumoniae X51479 171..1505 van_der_Rest,M.E.,_Schwarz,E.,_Oesterhelt,D._and_Konings,W.N. NA 0:1335 Data_kindly_reviewed_(23-APR-1990)_by_van_der_Rest_M.E. NA 12-SEP-1993 Klebsiella_pneumoniae_cit(+)_gene_for_citrate_carrier_protein. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Klebsiella_pneumoniae_CITH_KLEPN.gb Klebsiella_Trevisan_1885_(Approved_Lists_1980)_emend._Drancourt_et_al._2001 43800 Eur._J._Biochem._189_(2),_401-407_(1990) NA X51479 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 2186908 1335 NA genomic_DNA NA ATCC_13882 NA Klebsiella_sp._M-AI-2 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 573 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Klebsiella DNA_sequence_of_a_citrate_carrier_of_Klebsiella_pneumoniae NA X51479.1 ATGCCTACTGCGCGCTGCTCGATGAGAGCGTCCTCAACCGCGCCAGTCAGGATGATGGCTACCGCAGGTGGCGCAAGGATCGGCGCCATTCTGCGCGTCACGTCCGGTAACTTTCTCGAACAGTTCGACTTTTTCCTGTTCGGGTTTTATGCCACCTACATCGCCCATACCTTTTTTCCGGCGAGCAGTGAATTCGCCTCGCTGATGATGACCTTCGCAGTCTTTGGCGCCGGCTTTTTGATGCGCCCCATCGGCGCTATCGTACTTGGCGCCTATATCGACAAGGTGGGGCGGCGCAAGGGGCTGATCGTCACCCTGTCGATCATGGCCACCGGCACCTTCCTGATCGTGCTGATCCCCTCTTATCAGACCATTGGCCTGTGGGCGCCGCTGCTGGTGCTGATCGGCCGTCTGCTGCAGGGCTTTTCCGCAGGCGCCGAGCTGGGCGGGGTGTCGGTCTATCTGGCCGAGATCGCCACCCCGGGCCGCAAAGGCTTTTACACCAGCTGGCAGTCGGGCAGTCAGCAGGTTGCCATCATGGTGGCAGCCGCGATGGGCTTTGCCCTCAACGCGGTACTGGAGCCGAGCGCTATCAGCGACTGGGGCTGGCGTATTCCGTTCCTTTTCGGCGTCCTGATTGTTCCGTTCATTTTTATCCTGCGCCGTAAGCTGGAGGAGACCCAGGAGTTTACTGCCCGCCGCCATCATCTGGCGATGCGCCAGGTATTCGCCACCCTGCTGGCGAACTGGCAGGTGGTTATCGCCGGGATGATGATGGTGGCGATGACCACCACCGCGTTCTACCTGATCACCGTCTATGCCCCGACCTTTGGTAAAAAGGTGCTGATGCTCAGCGCCTCTGACAGCCTGCTGGTCACGCTGCTGGTGGCGATTTCCAACTTCTTCTGGCTGCCGGTGGGCGGGGCGCTGTCCGACCGCTTTGGCCGCCGGTCGGTGCTGATCGCCATGACCCTGCTGGCGCTGGCTACCGCCTGGCCTGCGCTGACCATGCTGGCGAACGCCCCGAGCTTTTTGATGATGCTGAGCGTGCTGCTGTGGCTGTCGTTTATCTACGGCATGTACAACGGGGCGATGATCCCGGCGCTGACCGAAATTATGCCCGCCGAAGTGCGCGTGGCAGGTTTCTCGCTGGCCTACAGCCTGGCGACCGCGGTGTTTGGCGGCTTCACGCCGGTGATTTCCACGGCGCTGATTGAGTATACCGGTGATAAAGCGTCTCCCGGCTACTGGATGAGCTTTGCCGCCATCTGCGGTCTGCTGGCCACTTGCTACCTCTATCGCCGTAGCGCCGTTGCGCTGCAGACGGCACGTTAA > 625 Kvar_4743 TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_general_substrate_transporter;_Osmosensory_transporter_coiled_coil;_KEGG:_kpe:KPK_5164_proline/glycine_betaine_transporter major_facilitator_superfamily_metabolite/H+_symporter YP_003441647.1 11 MLKRKKIKPITLKDVTIIDDGKLKKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPDANPSVQMIAALGTFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVMGAGVVVLISSVVGEQNFLDWGWRIPFFLALPLGIIGLYLRHALEETPAFQQHVDTMEQGDREGLQDGPKVSFKEIATKHWRSLLTCIGLVISTNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMVGMLFVQPVIGMLSDRFGRRPFILIGSVALFALAIPAFIMINSNVIGLIFAGLLLLAVVLNCFIGVMASSLPAMFPTHIRFSALASAFNISVLVAGLTPTLAAWLVETTQNLMMPAYYLMVIAVVGMATGLSMKETANRPLKGATPAASDIQEAKEILGEHYDNIEQKIEDIDQEIADLQAKRSRLVQQHPRIND gamma_subgroup Klebsiella_variicola_At-22 Klebsiella_variicola_At-22 NC_013850 5040054..5041556 Pinto-Tomas,A.A.,_Anderson,M.A.,_Suen,G.,_Stevenson,D.M.,_Chu,F.S.,_Cleland,W.W.,_Weimer,P.J._and_Currie,C.R. NA 0:1503 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001891.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4086469Source_DNA_and_bacteria_available_from_Cameron_Currie(currie@bact.wisc.edu)Contacts:_Cameron_Currie_(currie@bact.wisc.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Klebsiella_variicola_At-22GOLD_Stamp_ID_::_Gi04293Temperature_Range_::_MesophileGram_Staining_::_gram-Biotic_Relationship_::_Free_livingHabitat_::_Host,_Rhizosphere,_Rhizosphere-colonizing##Metadata-END##COMPLETENESS:_full_length. NA 13-OCT-2011 Klebsiella_variicola_At-22_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Klebsiella_variicola_D3RF69_KLEVT.gb Klebsiella_Trevisan_1885_(Approved_Lists_1980)_emend._Drancourt_et_al._2001 288932888 Science_326_(5956),_1120-1123_(2009) NA NC_013850 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19965433 1503 NA genomic_DNA NA At-22 NA Klebsiella_variicola_Rosenblueth_et_al._2004 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 640131 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Klebsiella Symbiotic_nitrogen_fixation_in_the_fungus_gardens_of_leaf-cutter_ants NA NC_013850.1 TTAGTCGTTGATACGCGGATGCTGCTGCACCAGACGCGACCGTTTTGCCTGCAGATCGGCGATCTCCTGATCGATATCTTCGATTTTTTGTTCGATGTTATCGTAGTGCTCGCCAAGGATTTCTTTCGCTTCCTGGATATCCGACGCTGCCGGGGTCGCCCCTTTCAGCGGGCGGTTAGCCGTCTCTTTCATCGACAGACCCGTCGCCATCCCCACCACCGCGATGACCATCAGGTAGTACGCCGGCATCATCAGGTTCTGAGTGGTTTCCACCAGCCACGCCGCCAGGGTTGGCGTCAGACCAGCAACCAGCACCGAGATGTTAAAGGCGCTGGCCAGGGCGCTGAAGCGGATGTGCGTCGGGAACATCGCCGGCAACGAGGAGGCCATCACCCCGATAAAGCAGTTCAGCACGACCGCCAGCAGCAGCAGACCAGCGAAAATCAGGCCAATCACGTTGCTGTTAATCATAATGAAGGCCGGGATCGCCAGGGCAAACAGCGCCACGCTACCAATCAGGATGAAAGGACGACGGCCAAAGCGGTCGCTGAGCATACCGATAACCGGCTGCACAAACAGCATCCCGACCATGATGGCGATGATGATCAGCACCCCATGATCTTCCGAGTAGTGCAGGTTATGCGACAGGTAGCTCGGCATATAGGTCAGCAGCATGTAATAGGTCACGTTGGTGGAAATCACCAGACCAATACAGGTCAGCAGGCTACGCCAGTGCTTGGTGGCAATCTCTTTAAAAGAGACCTTCGGCCCGTCCTGCAGTCCTTCACGGTCGCCCTGCTCCATGGTGTCCACATGCTGCTGGAACGCCGGGGTCTCTTCCAGCGCATGGCGCAGATAGAGACCGATGATGCCTAACGGCAGCGCCAGGAAGAACGGGATACGCCAACCCCAGTCGAGAAAGTTCTGTTCCCCCACCACGCTGGAGATGAGAACCACCACGCCGGCCCCCATCACAAACCCGGCGATGGAGCCAAAGTCCAGCCAGCTGCCCATAAAGCCGCGTTTACGGTCAGGAGAATATTCCGCGACGAAGATCGATGCCCCGGTATATTCACCGCCGACCGAGAAGCCTTGCGCCATTTTACACAGCAGCAGCAGGATCGGCGCCCAGATGCCTATCGTGGCATACGACGGAATCAGGCCGATACAGAAAGTACTTATCGACATGATCACGATGGTTATTGCGAGGATTTTCTGCCGACCATACTTATCGCCCAGCATCCCGAAAAACAGGCCGCCTAACGGACGAATTAAAAATGGAACGGAGAAGGTACCCAGTGCGGCAATCATCTGCACGCTTGGGTTGGCATCGGGGAAGAAGACTTTACCTAAGGCGTAGGCCACAAAGCCATAGACGCCGAAATCGAACCACTCCATCGCGTTACCCAGGGAGGCCGCGGTGATCGCCTTTTTCAGTTTACCATCATCGATGATGGTCACATCCTTAAGGGTGATGGGCTTTATTTTTTTCCTTTTAAGCAT > 626 Kvar_0807 PFAM:_periplasmic_binding_protein/LacI_transcriptional_regulator;_regulatory_protein_LacI;_SMART:_regulatory_protein_LacI;_KEGG:_kpe:KPK_0849_sugar_binding_LacI_family_transcriptional_regulator LacI_family_transcriptional_regulator YP_003437749.1 11 MASLKDVAKLANVSLMTVSRALNTPERLKPETLARVQAAIAETNYVPDLSAKKIRGARATPSTIGVLALDTVTTPFSVEITLSIEETARAHGWNSFVVNMFSDDSPEAVVDLLLSHRPDGIIFTTMGLRQVPLPDKLLTLPCVLANCESLSQPVASYIPDDEQGQYDAVKALLAAGYRHPLCLHLPASQLATIRRRQGLERACREAGIEPDHLIHSYMGQGDEHYHDIPAVVLAHIREGKPGFDSVICGNDRIAFMVYQTLLGQGLRIPQDVAVVGYDNMVGIGDLFLPPLSTVQLPHYDIGRLSALHIIHGDNHRETRKVASPWLPRASH gamma_subgroup Klebsiella_variicola_At-22 Klebsiella_variicola_At-22 NC_013850 839676..841097 Pinto-Tomas,A.A.,_Anderson,M.A.,_Suen,G.,_Stevenson,D.M.,_Chu,F.S.,_Cleland,W.W.,_Weimer,P.J._and_Currie,C.R. NA 1418:>1422 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001891.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4086469Source_DNA_and_bacteria_available_from_Cameron_Currie(currie@bact.wisc.edu)Contacts:_Cameron_Currie_(currie@bact.wisc.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Klebsiella_variicola_At-22GOLD_Stamp_ID_::_Gi04293Temperature_Range_::_MesophileGram_Staining_::_gram-Biotic_Relationship_::_Free_livingHabitat_::_Host,_Rhizosphere,_Rhizosphere-colonizing##Metadata-END##COMPLETENESS:_full_length. NA 13-OCT-2011 Klebsiella_variicola_At-22_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Klebsiella_variicola_D3RHQ4_KLEVT.gb Klebsiella_Trevisan_1885_(Approved_Lists_1980)_emend._Drancourt_et_al._2001 288932888 Science_326_(5956),_1120-1123_(2009) NA NC_013850 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19965433 1422 NA genomic_DNA NA At-22 NA Klebsiella_variicola_Rosenblueth_et_al._2004 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 640131 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Klebsiella Symbiotic_nitrogen_fixation_in_the_fungus_gardens_of_leaf-cutter_ants NA NC_013850.1 ATGACTTCAATCAGTAACGACTCTGCATTAACGCCGCGGACACAACGTGACACCCGGCGGATGAACTGGTTTGTTTCTATCGCTGCGGCGGTAGCGGGGTTGCTCTTTGGCCTGGATATCGGCGTGATATCCGGGGCGCTGCCCTTTATTACCGACCACTTCACCTTATCCAGCCAGCTTCAGGAGTGGGTGGTCAGCAGTATGATGTTGGGGGCGGCGATCGGTGCGCTGTTTAACGGCTGGCTGTCGTTCCGCCTCGGCCGTAAATACAGCCTGATGGCGGGGGCTGTGCTCTTTGTTGCCGGCTCTATCGGCTCCGCTTTTGCCGCCAGCGTGGAGGTGCTGCTGATAGCCCGCGTGGTGTTGGGGGTGGCCGTCGGGATCGCTTCCTATACCGCGCCGTTGTACCTCTCCGAGATGGCCAGTGAGAACGTGCGCGGGAAAATGATCAGTATGTACCAGCTGATGGTGACCCTCGGCATTGTGCTGGCGTTTCTTTCCGATACTGCCTTTAGCTACAGCGGTAACTGGCGCGCCATGTTAGGCGTGCTGGCGCTGCCGGCGGTGATCCTGATTATTCTGGTCGTCTTTTTGCCGAACAGCCCGCGCTGGCTGGCGGAGAAAGGACGCCATATCGAAGCGGAAGAGGTGCTGCGGATGCTGCGCGATACCTCGGAAAAGGCGCGCGACGAGCTTAACGAGATCCGTGAGAGCCTGAAGCTGAAGCAGGGCGGCTGGGCGTTGTTTAAGGTCAATCGTAACGTGCGCCGGGCGGTGTTCCTTGGCATGCTGCTGCAGGCGATGCAGCAGTTCACCGGCATGAACATCATCATGTACTACGCGCCGCGTATCTTTAAAATGGCGGGCTTTACCACTACCGAACAGCAGATGATCGCCACTCTGGTGGTGGGCCTGACCTTTATGTTTGCCACCTTTATTGCGGTGTTCACGGTGGATAAAGCGGGTCGTAAGCCGGCGCTAAAAATCGGCTTTAGCGTGATGGCGCTGGGCACCCTGGTGCTGGGTTACTGCCTGATGCAGTTCGACAATGGCACCGCCTCCAGCGGTCTCTCCTGGCTTTCCGTCGGCATGACCATGATGTGTATTGCCGGGTATGCGATGAGCGCGGCGCCGGTGGTGTGGATCCTCTGCTCCGAGATCCAGCCGCTGAAATGCCGCGACTTCGGTATCACCTGCTCGACCACCACTAACTGGGTGTCGAACATGATCATCGGCGCCACCTTCCTGACGCTGCTTGACGCGATTGGCGCCGCCGGTACCTTCTGGCTCTACACGGTGCTTAACGTGGCCTTTATCGGCGTCACCTTCTGGCTGATCCCGGAAACCAAGAATGTCACCCTCGAGCACATTGAGCGCAACCTGATGGCGGGCGAGAAGCTGCGCAACATCGGTAACCGTTAA > 627 Kvar_3669 TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_general_substrate_transporter;_KEGG:_kpe:KPK_3868_citrate:proton_symporter major_facilitator_superfamily_metabolite/H+_symporter YP_003440581.1 11 MTQQSTRAGTVGAILRVTSGNFLEQFDFFLFGFYATYIARTFFPAESEFAALMLTFAVFGSGFLMRPIGAVVLGAYIDRIGRRKGLMVTLAIMGCGTLLIALVPGYQTIGVLAPILVLVGRLLQGFSAGVELGGVSVYLSEIATPGNKGFYTSWQSASQQVAIVMAALIGYALNATLEHEEIADWGWRIPFFIGCLIIPLIFVLRRSLQETEEFLQRKHRPDTKEILTTIARNWRIITAGTLLVAMTTTTFYFITVYTPTYGRAVLHLSARDSLLVTMLVGISNFIWLPIGGAISDRIGRRPVLMGITLLALLTTWPVMHWLTAAPDFTRMTLVLLWFSFFFGMYNGAMVAALTEVMPVYVRTVGFSLAFSLATAIFGGLTPAISTALVELTGDKSAPGWWLMCAALCGFIATALLFVRLSRGYQPAESQR gamma_subgroup Klebsiella_variicola_At-22 Klebsiella_variicola_At-22 NC_013850 3846855..3848150 Pinto-Tomas,A.A.,_Anderson,M.A.,_Suen,G.,_Stevenson,D.M.,_Chu,F.S.,_Cleland,W.W.,_Weimer,P.J._and_Currie,C.R. NA 0:1296 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001891.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4086469Source_DNA_and_bacteria_available_from_Cameron_Currie(currie@bact.wisc.edu)Contacts:_Cameron_Currie_(currie@bact.wisc.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Klebsiella_variicola_At-22GOLD_Stamp_ID_::_Gi04293Temperature_Range_::_MesophileGram_Staining_::_gram-Biotic_Relationship_::_Free_livingHabitat_::_Host,_Rhizosphere,_Rhizosphere-colonizing##Metadata-END##COMPLETENESS:_full_length. NA 13-OCT-2011 Klebsiella_variicola_At-22_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Klebsiella_variicola_D3RMA1_KLEVT.gb Klebsiella_Trevisan_1885_(Approved_Lists_1980)_emend._Drancourt_et_al._2001 288932888 Science_326_(5956),_1120-1123_(2009) NA NC_013850 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19965433 1296 NA genomic_DNA NA At-22 NA Klebsiella_variicola_Rosenblueth_et_al._2004 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 640131 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Klebsiella Symbiotic_nitrogen_fixation_in_the_fungus_gardens_of_leaf-cutter_ants NA NC_013850.1 ATGACGCAACAATCCACGCGCGCCGGCACCGTCGGCGCTATCCTCCGCGTGACCAGCGGTAATTTTCTCGAACAGTTCGACTTTTTCCTGTTTGGCTTTTATGCCACCTATATCGCCCGCACCTTCTTTCCGGCGGAGAGCGAGTTCGCAGCGCTGATGCTGACCTTTGCGGTGTTTGGTTCGGGCTTCCTGATGCGCCCCATCGGCGCGGTGGTCCTCGGCGCCTATATCGACAGAATCGGGCGCCGCAAAGGGCTGATGGTCACCCTGGCGATCATGGGCTGCGGGACGCTACTCATCGCCCTGGTACCTGGCTATCAGACCATCGGCGTGCTGGCGCCGATCCTCGTGTTAGTGGGCCGCTTGCTGCAGGGGTTTTCCGCGGGCGTCGAGCTTGGCGGGGTGTCGGTTTATCTGTCGGAAATCGCCACGCCGGGCAATAAAGGCTTCTATACCAGCTGGCAATCCGCCAGCCAGCAGGTGGCTATCGTCATGGCGGCGCTGATTGGCTACGCGCTAAACGCCACGCTGGAGCATGAGGAGATCGCCGACTGGGGCTGGCGCATTCCCTTCTTCATTGGCTGTCTGATTATTCCGCTGATTTTCGTGCTGCGCCGCTCGCTGCAGGAGACTGAGGAGTTCCTGCAGCGTAAACATCGCCCGGATACTAAAGAGATCCTGACCACTATCGCCAGGAACTGGCGCATTATTACCGCCGGGACGTTGCTGGTGGCGATGACCACCACCACCTTTTATTTTATCACCGTCTATACGCCGACCTACGGCAGAGCGGTGCTGCACCTCAGCGCTCGCGACAGCCTGCTGGTGACCATGCTGGTGGGCATCTCCAACTTTATCTGGTTACCGATTGGCGGGGCGATCTCTGACCGGATCGGTCGTCGTCCGGTGCTGATGGGCATTACCCTGCTGGCGCTGCTCACCACCTGGCCGGTGATGCACTGGCTCACCGCCGCGCCCGATTTCACCCGTATGACGCTGGTCCTGCTGTGGTTCTCGTTCTTCTTTGGGATGTATAACGGCGCGATGGTGGCGGCGCTCACCGAAGTGATGCCGGTGTACGTCCGCACTGTAGGCTTCTCTCTGGCCTTTAGTCTCGCTACTGCCATTTTCGGCGGCCTGACGCCGGCTATCTCTACCGCCCTGGTCGAGCTCACCGGCGATAAAAGCGCGCCGGGCTGGTGGCTAATGTGCGCTGCGCTGTGCGGGTTCATTGCCACCGCGCTGCTGTTCGTGCGGCTGAGCCGAGGCTATCAGCCGGCGGAGAGTCAGCGCTAA > 628 KLLA0E14653g weakly_similar_to_uniprot|P32466_Saccharomyces_cerevisiae_YDR345C_HXT3_Low_affinity_glucose_transporter_of_the_major_facilitator_superfamily KLLA0E14653p CAG99697.1 NA MPDYLNAMGNPNGAELGVISNGMMFGMLLCFQFAPYVIDKYGRKVGMYVGNVLICIGVLIQAVSGAWINGLPEDYDKKDVFGMFVASRIVLGTGVLLISISTPALISEISYPPHRELCTSIYNTCWYLGAVVSAWVTYGCRNLAHHWNWRIPSIIQAFFPIVQLIVLYNCPESPRYLVFHNRDSEARAILNKYHAGDNEEYAGLIDFELAEIKLAIEQEKASQATNFSDFFKTSGNRHRLWILIWTAIFTQLSGNGLVSYYLSKVFNSIGITDPDEQLEWNGWLMLYNWLCSLILMSYIAPFFKRRQLFLISLTSMACCYIVWTALSAENQKRNFEDKSLANGVLAMIFLYYLSYNFGFNGYPFLYTTEILPYTLRGKGLTIFQLAISLAVIFNGFVNSIAMDAIEWKYYIFYCCFLAVEIVVCYFTFVETSGRSLEEVDEVFGDGITQLPEVTSQVMLEDGKRLSVEHLERTETSS Saccharomycetes Kluyveromyces_lactis Kluyveromyces_lactis CR382125 1309427..1310860 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1434 This_is_an_updated_version_of_the_complete_genome_sequence._TheKluyveromyces_lactis_sequence_is_made_of_6_chromosomes_(A_to_F).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 10-SEP-2008 Kluyveromyces_lactis_strain_NRRL_Y-1140_chromosome_E_complete_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Kluyveromyces_lactis_Q6CN79_KLULA.gb Kluyveromyces 49643087 Nature_430_(6995),_35-44_(2004) fungi CR382125 NA NA budding_yeasts sac_fungi 15229592 1434 E genomic_DNA 28985 NRRL_Y-1140 NA Kluyveromyces_marxianus_var._lactis NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 28985 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Kluyveromyces Genome_evolution_in_yeasts NA CR382125.1 ATGCCAGACTATCTAAACGCGATGGGTAATCCTAACGGTGCAGAGTTGGGTGTTATCTCCAACGGTATGATGTTTGGTATGCTTTTGTGCTTCCAATTTGCACCATATGTCATTGACAAGTATGGCCGTAAGGTCGGGATGTACGTGGGTAATGTCTTGATTTGCATTGGTGTCCTCATCCAAGCAGTATCTGGTGCATGGATCAATGGTTTACCAGAGGATTATGACAAGAAGGACGTGTTCGGTATGTTTGTTGCTTCACGTATCGTGTTGGGTACCGGAGTTTTGTTGATCAGTATTTCGACTCCAGCTTTGATCTCAGAAATATCATACCCTCCTCACAGAGAGCTTTGTACCTCCATATATAATACATGTTGGTACCTTGGTGCTGTTGTCTCAGCTTGGGTCACTTACGGCTGCAGAAACCTAGCTCATCATTGGAACTGGAGAATTCCATCTATCATTCAAGCTTTTTTCCCTATCGTTCAACTCATTGTGCTATACAACTGCCCAGAATCTCCAAGATATCTTGTTTTCCATAACAGAGATTCCGAAGCAAGGGCCATTTTGAACAAATACCATGCAGGTGATAATGAGGAATACGCGGGCTTGATCGATTTTGAATTGGCAGAAATTAAACTGGCTATTGAACAAGAAAAAGCTTCTCAAGCTACCAACTTCTCTGATTTCTTTAAAACCTCCGGTAATCGCCATAGATTGTGGATTTTGATCTGGACTGCAATTTTCACACAACTTTCCGGAAATGGATTGGTGTCTTACTATCTATCCAAAGTCTTCAATTCGATTGGTATTACAGATCCTGATGAGCAATTAGAGTGGAATGGTTGGTTAATGCTTTACAACTGGTTATGTTCATTAATTTTGATGAGTTACATCGCCCCATTCTTCAAAAGAAGGCAATTATTTTTGATATCCTTGACTTCAATGGCCTGTTGCTACATTGTCTGGACAGCTTTATCTGCTGAAAACCAAAAACGTAATTTCGAGGATAAATCTCTAGCAAATGGTGTCTTGGCAATGATCTTCTTATATTATCTTTCTTACAACTTTGGATTCAACGGTTACCCATTCCTCTACACAACTGAAATTTTACCTTACACTTTGAGAGGTAAAGGGCTTACAATTTTCCAGTTGGCCATTAGTCTTGCAGTTATTTTCAACGGGTTTGTTAACTCAATTGCAATGGATGCTATTGAATGGAAATACTACATCTTTTATTGTTGTTTCTTAGCCGTTGAGATTGTTGTCTGTTATTTCACTTTCGTTGAAACTTCTGGAAGATCTTTGGAAGAAGTTGACGAGGTGTTTGGAGATGGTATCACTCAACTCCCAGAAGTGACATCCCAGGTTATGTTAGAAGATGGTAAGAGGTTATCTGTTGAACATCTAGAAAGAACAGAAACCTCATCCTAA > 629 KLLA0A01694g weakly_similar_to_uniprot|P25346_YCR098C_Saccharomyces_cerevisiae_GIT1_Plasma_membrane_permease,_mediates_uptake_of_the_phosphatidylinositol_metabolite_glycerophosphoinositol KLLA0A01694p CAH02662.1 NA MTYDRNHLEHPGTRDLPKSFSGYAHHLVSQINKEITWNKTYDVTEESEEISENDGVVGVNEFDSTGESLVAKADDSGKKSGSKTSFRSNLHIYWPIFTTGSGLFSDGYINASIGTVSTCLAQIYGDQYSNSNAIQNVSSIAFVGIVLGQLSFGYIADYYSRRLAMLMGNIILIVFSILAAGAWGVGTTTTQAGGIFAAITAYRFFLGVGIGSEYPAGSTAAAEASALLPAKRRNRWFVWFTNFMIDWGFVIAAVVPLVLICIFGEHRLQWVWRLTMGLGAIPPFSLFLMRLKFKENKSFTSTKFNKMMPYGLIFKFYWFRTIIISIIWFLYNFSSYAFGIYSSLIIKNLLTNDSDEQVGLKESFAWNVLFNAFYLPGSFAGAIFADYIGPRLTLSLGLFVQAMFGIGMTCGFKSLEKNIAAFTVVFGIFTSLGEFSVGDNIGLIASKSYATPVRGTLYSISAAFAKVGAFVGTYAFPQIIKNAGGSDTTNGMRAPFWVATALCLVSCFLALFFLPELDPNAIVDEDRKFAEYLAQSGYDMSTLGTESDNTVEVEYSQEILKSDSIDKN Saccharomycetes Kluyveromyces_lactis Kluyveromyces_lactis CR382121 149587..151293 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1707 This_is_an_updated_version_of_the_complete_genome_sequence._TheKluyveromyces_lactis_sequence_is_made_of_6_chromosomes_(A_to_F).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 10-SEP-2008 Kluyveromyces_lactis_strain_NRRL_Y-1140_chromosome_A_complete_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Kluyveromyces_lactis_Q6CYB5_KLULA.gb Kluyveromyces 49640134 Nature_430_(6995),_35-44_(2004) fungi CR382121 NA NA budding_yeasts sac_fungi 15229592 1707 A genomic_DNA 28985 NRRL_Y-1140 NA Kluyveromyces_marxianus_var._lactis NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 28985 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Kluyveromyces Genome_evolution_in_yeasts NA CR382121.1 CTAATTCTTATCAATAGAATCTGACTTTAAAATTTCCTGTGAGTATTCAACTTCGACAGTGTTGTCACTTTCAGTACCCAATGTCGACATATCGTAACCACTTTGAGCCAAGTATTCGGCGAATTTGCGGTCCTCATCCACAATAGCATTGGGGTCAAGCTCAGGTAAGAAGAATAGGGCCAAAAAACATGAAACGAGACATAAAGCGGTAGCAACCCAGAATGGAGCACGCATACCGTTAGTGGTATCGGAACCACCTGCATTCTTGATGATTTGTGGGAAAGCATAAGTACCCACAAAGGCACCAACTTTAGCGAAAGCTGCCGAGATGGAATAAAGAGTACCTCTTACTGGTGTAGCATAACTCTTGGAAGCGATCAAACCGATGTTGTCACCAACTGAGAATTCACCCAAAGAGGTGAAGATACCGAAGACAACGGTAAATGCAGCGATATTTTTCTCCAAAGATTTGAAACCACATGTCATACCGATACCAAACATAGCTTGTACGAACAAACCCAAGGATAAGGTCAAACGAGGACCAATATAATCTGCAAAGATCGCACCAGCGAAGGAACCTGGTAAGTAAAATGCGTTGAATAAAACGTTCCAAGCGAAGGATTCCTTCAAACCAACTTGTTCGTCAGAGTCATTTGTTAAAAGGTTCTTAATGATCAAAGAAGAGTAAATACCGAATGCATATGAGGAAAAGTTGTAAAGGAACCAAATGATGGAGATGATAATGGTACGGAACCAATAAAATTTGAAGATCAACCCGTAAGGCATCATCTTGTTAAATTTGGTGGAAGTGAAACTCTTGTTTTCCTTGAATTTTAATCTCATCAAGAACAATGAGAATGGTGGAATCGCACCCAGTCCCATGGTTAATCTCCAAACCCATTGTAATCTGTGTTCACCAAAGATACAAATAAGAACCAATGGCACAACGGCTGCGATAACGAAACCCCAATCAATCATGAAGTTTGTGAACCAAACAAACCAACGGTTCCTCCTCTTTGCGGGCAATAAAGCTGAAGCTTCTGCAGCAGCAGTAGACCCAGCAGGATATTCAGATCCGATACCGACACCTAAAAAGAATCTATAAGCAGTGATAGCTGCAAATATACCACCAGCTTGAGTCGTTGTGGTGCCGACACCCCAGGCACCAGCAGCAAGGATGGAAAACACAATCAAGATGATGTTACCCATCAACATTGCCAATCTACGAGAATAGTAGTCAGCAATGTAACCGAAGGACAATTGTCCTAAAACGATACCAACAAAAGCAATAGATGAAACGTTTTGAATGGCATTCGAATTCGAGTACTGATCACCATAAATCTGCGCTAAACATGTGGAAACGGTACCAATGGAAGCGTTGATATAACCATCACTGAATAAACCGGACCCCGTAGTGAAGATAGGCCAGTAAATGTGCAAATTTGATCTGAACGAGGTCTTTGAACCACTCTTCTTGCCAGAATCATCAGCTTTTGCCACTAAACTTTCACCGGTGCTATCGAACTCGTTGACTCCAACGACACCATCGTTCTCACTTATCTCTTCCGATTCCTCTGTGACATCATACGTTTTGTTCCACGTGATCTCTTTGTTAATTTGTGATACCAAATGATGTGCATATCCTGAAAAGGACTTAGGCAAATCCCTAGTACCTGGATGTTCAAGATGATTCCTATCGTAAGTCAT > 630 KLLA0D13310g uniprot|P18631_Kluyveromyces_lactis_RAG1_Low-affinity_glucose_transporter KLLA0D13310p CAH00752.1 NA MSNQMTDSTSAGSGTEHSVDTNTALKAGSPNDLKVSHEEDLNDLEKTAEETLQQKPAKEYIFVSLCCVMVAFGGFVFGWDTGTISGFVNQTDFLRRFGQEKADGSHYLSNVRTGLIVSIFNIGCAVGGIVLSNIGDRWGRRIGLITVIIIYVIGIIIQIASVDKWYQYFIGRIISGLGVGGITVLSPMLISETAPKHLRGTLVSCYQLMITFGIFLGYCTNYGTKNYSNSVQWRVPLGLCFAWAIFMVLGMMFVPESARFLVETDQIEEARKSLAKTNKVSIDDPVVKYELLKIQSSIELEKAAGNASWGELITGKPSMFRRTLMGIMIQSLQQLTGDNYFFYYGTTIFQSVGMDDSFETSIVLGIVNFASTFFALYTVDHFGRRNCLLYGCVGMVACYVVYASVGVTRLWPDGPDHPDISSKGAGNCMIVFACFYIFCFATTWAPIAYVVISESYPLRVKGKAMAIASASNWIWGFLIGFFTPFITSAIHFYYGYVFMGCMVFAFFYVYFFVPETKGLTLEEVNEMYSEGVLPWKSSSWVPSSRRGAEYDVDALQHDDKPWYKAML Saccharomycetes Kluyveromyces_lactis Kluyveromyces_lactis CR382124 1143027..1144730 Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1704 This_is_an_updated_version_of_the_complete_genome_sequence._TheKluyveromyces_lactis_sequence_is_made_of_6_chromosomes_(A_to_F).The_sequence_was_annotated_by_the_Genolevures_Consortium._For_moreinformation_go_tohttp://cbi.labri.fr/Genolevures. NA 10-SEP-2008 Kluyveromyces_lactis_strain_NRRL_Y-1140_chromosome_D_complete_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Kluyveromyces_lactis_RAG1_KLULA.gb Kluyveromyces 49642208 Nature_430_(6995),_35-44_(2004) fungi CR382124 NA NA budding_yeasts sac_fungi 15229592 1704 D genomic_DNA 28985 NRRL_Y-1140 NA Kluyveromyces_marxianus_var._lactis NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 28985 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Kluyveromyces Genome_evolution_in_yeasts NA CR382124.1 TTACAACATAGCCTTGTACCATGGCTTGTCGTCATGTTGCAAAGCATCGACATCGTACTCTGCACCTCTTCTTGAAGATGGGACCCATGATGAAGATTTCCATGGTAGGACACCTTCAGAGTACATTTCATTAACTTCTTCCAAAGTTAGACCCTTGGTTTCAGGAACGAAGAAGTAGACGTAGAAGAAGGCGAATACCATACAACCCATAAAGACGTAACCGTAGTAGAAGTGAATAGCAGATGTAATAAATGGTGTGAAGAACCCAATCAGGAAACCCCAGATCCAGTTCGAGGCGGAAGCGATAGCCATTGCCTTACCCTTAACTCTAAGTGGATAGGATTCGGAGATAACCACGTATGCGATTGGAGCCCAAGTAGTAGCGAAACAGAAGATATAAAAGCACGCAAAGACAATCATACAGTTACCAGCACCCTTGGAAGAAATATCAGGATGATCTGGACCGTCTGGCCATAATCTTGTAACACCAACAGATGCATAAACAACGTAACATGCAACCATACCAACACAACCGTATAATAGACAGTTACGACGACCGAAATGATCAACTGTGTATAAAGCAAAGAAGGTAGAAGCGAAGTTCACGATACCCAAGACGATCGAAGTTTCGAAAGAATCGTCCATACCGACAGATTGGAAAATTGTGGTACCGTAATAGAAGAAATAGTTATCACCAGTCAATTGTTGCAGAGATTGAATCATAATACCCATTAAAGTACGTCTGAACATACTTGGCTTACCGGTAATCAATTCACCCCATGATGCGTTACCTGCAGCCTTTTCCAATTCGATACTGGATTGGATCTTTAGGAGCTCATATTTCACAACAGGATCGTCAATAGAAACTTTGTTGGTCTTTGCCAAAGATTTTCTGGCCTCTTCAATTTGATCAGTTTCAACCAAGAATCTTGCAGATTCTGGAACAAACATCATACCAAGAACCATAAAGATGGCCCAAGCGAAACATAGACCTAATGGAACTCTCCATTGGACAGAGTTAGAGTAGTTCTTGGTACCGTAGTTAGTACAGTAACCCAAGAAAATACCAAAAGTAATCATCAATTGGTAACATGAGACCAAAGTACCTCTTAAATGTTTAGGAGCGGTTTCCGAAATCAACATTGGCGACAAAACTGTGATACCACCAACACCTAAACCAGAAATAATTCTACCAATGAAATATTGGTACCATTTGTCCACAGATGCAATTTGAATAATGATACCAATAACATAGATTATAATAACGGTAATCAAACCAATTCTACGACCCCATCTATCACCGATGTTAGACAAAACAATACCACCAACGGCACAACCAATATTGAAAATGGAAACAATCAAACCAGTTCTAACATTGGACAAGTAGTGAGAACCATCGGCCTTTTCTTGACCGAATCTTCTAAGGAAATCAGTTTGGTTAACAAAACCAGAAATGGTACCAGTATCCCAACCGAAAACGAAACCACCAAAGGCAACCATAACACAACATAATGAAACAAATATGTATTCCTTTGCTGGCTTTTGTTGTAAGGTTTCTTCGGCTGTCTTTTCAAGGTCATTCAAATCCTCTTCATGCGATACCTTAAGGTCATTGGGACTACCGGCTTTTAATGCGGTATTAGTGTCGACGGAATGTTCAGTGCCACTTCCAGCACTCGTACTATCTGTCATTTGATTAGACAT > 631 KRH_11530 fragment MFS_transporter YP_001855006.1 11 MNQDTARTSACPGAGRALFAAIVGTVIEWYDYALYGTAAGLVIGPLFFAGSSAGASLAAFATFAVGFVARPLGGVLVGHVGDRHGRRPAMLLTVVLMGVATVGIGLLPIHLAIGAAAPVLLVLLRLLQGMGAGAELAGAMTLVAEFAPPRRRGLYTSLVLSAPPAGIVLASVAFLWAASQGDDALLAWAWRVPFLASAVLFALAVFIRAKLEESPEYEAALARARQQGQGRKVPLLQLLRHHTRAVLAGFFALTGPTP high_GC_Gram+ Kocuria_rhizophila_DC2201 Kocuria_rhizophila_DC2201 NC_010617 1272280..1273056 Takarada,H.,_Sekine,M.,_Kosugi,H.,_Matsuo,Y.,_Fujisawa,T.,_Omata,S.,_Kishi,E.,_Shimizu,A.,_Tsukatani,N.,_Tanikawa,S.,_Fujita,N._and_Harayama,S. NA 0:777 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AP009152.This_work_was_conducted_as_a_part_of_the_projectDevelopment_of_a_Technological_Infrastructure_for_IndustrialBioprocesses_of_the_New_Energy_and_Industrial_TechnologyDevelopmentOrganization_(NEDO),_Japan.Please_visit_our_web_site.URL:http://www.bio.nite.go.jp/DOGAN_;_Database_of_Genomes_Analyzed_at_NITEThe_database_contains_genome_sequence_data,_physical_maps_and_thegenomic_and_proteomic_data_of_the_microorganisms_analyzed.URL:http://www.bio.nite.go.jp/dogan/TopThe_microbial_strain_and_microbial_genomic_DNA_clones_used_for_thesequencing_project_are_available_through_the_NBRC.URL:http://www.nbrc.nite.go.jp/e/index.htmlThe_paper_is_published_at_doi:10.1128/JB.01853-07.COMPLETENESS:_full_length. NA 25-JAN-2012 Kocuria_rhizophila_DC2201,_complete_genome. NA Micrococcaceae_Pribram_1929_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Kocuria_rhizophila_B2GGG0_KOCRD.gb Pelczaria_Poston_1994 184199646 J._Bacteriol._190_(12),_4139-4146_(2008) NA NC_010617 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 18408034 777 NA genomic_DNA NA DC2201_(=_NBRC_103217) NA Kocuria_rhizophila_Kovacs_et_al._1999 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Micrococcineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 378753 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Micrococcineae,_Micrococcaceae,_Kocuria Complete_genome_sequence_of_the_soil_actinomycete_Kocuria_rhizophila NA NC_010617.1 GTGAACCAGGACACAGCACGGACATCGGCGTGCCCCGGCGCGGGCAGGGCACTCTTCGCGGCCATCGTGGGAACCGTGATCGAGTGGTACGACTACGCGCTCTACGGCACCGCCGCGGGGCTCGTGATCGGGCCGCTCTTCTTCGCGGGATCGTCCGCAGGCGCCTCCCTGGCCGCGTTCGCGACCTTCGCCGTGGGATTCGTGGCGCGTCCTCTCGGAGGCGTCCTGGTGGGGCACGTGGGGGACCGCCACGGGCGCCGCCCCGCGATGCTGCTCACGGTGGTCCTCATGGGCGTGGCCACCGTGGGCATCGGCCTGCTGCCCATCCACCTGGCCATCGGCGCGGCCGCCCCCGTGCTGCTCGTGCTGCTGCGGCTGCTGCAGGGCATGGGCGCGGGCGCCGAGCTCGCCGGGGCCATGACCCTCGTGGCCGAGTTCGCCCCGCCCCGGCGCCGCGGCCTCTACACCTCCCTGGTGCTCTCCGCACCGCCCGCCGGCATCGTGCTGGCGTCCGTCGCGTTCCTCTGGGCGGCGTCCCAGGGCGACGACGCCCTGCTCGCCTGGGCGTGGCGCGTCCCGTTCCTGGCCTCGGCCGTGCTCTTCGCGCTCGCGGTGTTCATCCGCGCCAAGCTCGAGGAGAGTCCCGAGTACGAGGCGGCCCTGGCCCGTGCGCGGCAGCAGGGGCAGGGGCGCAAGGTGCCGCTGCTGCAGCTGCTGCGCCACCACACCAGGGCCGTGCTCGCGGGGTTCTTCGCGCTGACCGGTCCAACGCCCTGA > 632 Krac_10200 InterPro_IPR011701:IPR016196:IPR005829;_KEGG:_aac:Aaci_0792_major_facilitator_superfamily_MFS_1;_PFAM:_major_facilitator_superfamily_MFS_1;_SPTR:_B7DMX7_Major_facilitator_superfamily_MFS_1;_PFAM:_Sugar_(and_other)_transporter major_facilitator_superfamily_MFS_1 EFH88711.1 11 MAVTSAQATIAARMERVPLFSLHRKLVFVMGIGTFFDLFDVALGGLLGAILANLYHLNTFWTAAIIASGFFGMFVGAIALSVVSDYFGRRTLYLIDLLIYSLFSLATAFAPDVTWVIVFRFLAGIGLGATPALTDVYLSEMLPSRVRGRYTAWAYTFGLLGVPIAGLLSKVLVSTTFLMAGWRWLLVAGALGALFVWWMRRGLPESPRWFEIRQKTADAETAVLAIEQAAIRELHLTALPEPAQVVVEPPKRATLAESFRGIYAKRTIMLLIFQFFQTVGFYGFGSLAPIILTAKGFSVVNTLAYTAPIALGYPLGSWLSVPIVERMERKWLIIGTALLMALFGLIFGFATSVLVIIASGFLLTVASQVFSNSYHIYQAEIFPTRMRGTAVGIAYSLSRLSGGILPFVALPLLQTSGPVAVFTACAIILGIVSLDVGLLGPRTTGRTLEEVAH Ktedonobacteria_corrig._Cavaletti_et_al._2007_emend._Yabe_et_al._2010 Ktedonobacter_racemifer_DSM_44963 Ktedonobacter_racemifer_DSM_44963 ADVG01000001 999542..1000903 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Kyrpides,N.,_Mavromatis,K.,_Ivanova,N.,_Chertkov,O.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Land,M.,_Hauser,L.,_Markowitz,V.,_Cheng,J.-F.,_Hugenholtz,P.,_Woyke,T.,_Wu,D.,_Jando,J.,_Schneider,S.,_Sikorski,J.,_Klenk,H.-P._and_Eisen,J.A. NA 0:1362 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4083037Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_Cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFWe_are_labeling_this_project_as_Permanent_Draft._No_additional_workon_this_project_is_planned_at_this_time.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Ktedonobacter_racemifer_SOSP1-21,_DSM_44963Culture_Collection_ID_::_DSM_44963GOLD_Stamp_ID_::_Gi02261Isolation_Site_::_Soil_sample_collected_in_Gerenzano_ItalyIsolation_Country_::_ItalyOxygen_Requirement_::_AerobeCell_Shape_::_Filament-shapedMotility_::_NonmotileSporulation_::_SporulatingTemperature_Range_::_MesophileTemperature_Optimum_::_28_-_33CpH_::_4.8_-_6.8Gram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_SoilPhenotypes_::_Acidophile##Metadata-END## NA 04-JUN-2010 Ktedonobacter_racemifer_DSM_44963_Krac_Contig206,_whole_genome_shotgun_sequence. NA Ktedonobacteraceae_corrig._Cavaletti_et_al._2007 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ktedonobacter_racemifer_D6TG09_9CHLR.gb Ktedonobacter_corrig._Cavaletti_et_al._2007 297554026 Unpublished NA ADVG01000001 NA NA Ktedonobacterales_corrig._Cavaletti_et_al._2007 green_nonsulfur_bacteria NA 1362 NA genomic_DNA NA NA NA Ktedonobacter_racemifer_corrig._Cavaletti_et_al._2007 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 485913 Bacteria,_Chloroflexi,_Ktedonobacteria,_Ktedonobacterales,_Ktedonobacteraceae,_Ktedonobacter The_Permanent_Draft_genome_of_Ktedonobacter_racemifer_DSM_44963 NA ADVG01000001.1 ATGGCAGTGACTAGCGCACAAGCAACGATTGCGGCTCGTATGGAGCGTGTTCCTCTGTTCTCACTCCATCGCAAGCTTGTCTTTGTCATGGGGATCGGAACGTTCTTCGATCTCTTCGATGTCGCTTTAGGTGGTCTGTTAGGGGCGATCCTGGCAAATCTCTACCACTTGAATACCTTTTGGACTGCGGCAATCATCGCCTCCGGTTTTTTTGGGATGTTCGTTGGGGCCATCGCCCTCAGCGTCGTCTCGGACTACTTTGGTCGGCGCACCCTCTACCTGATTGACTTGCTGATCTACTCGCTCTTCTCATTGGCCACCGCCTTTGCGCCCGACGTGACCTGGGTGATCGTGTTTCGCTTTCTGGCTGGCATCGGCCTTGGGGCCACACCCGCACTCACCGATGTCTACTTGAGCGAGATGCTTCCCAGCCGAGTGCGCGGGCGTTACACCGCATGGGCCTATACCTTCGGCTTACTGGGTGTGCCGATCGCTGGTCTGCTTTCAAAAGTACTGGTCTCAACGACCTTCCTCATGGCAGGATGGCGCTGGTTGCTGGTCGCGGGAGCCTTAGGCGCGCTCTTCGTCTGGTGGATGCGCCGTGGTCTGCCCGAATCGCCGCGCTGGTTCGAGATCCGCCAGAAAACGGCAGATGCCGAGACTGCGGTCCTCGCGATTGAGCAAGCAGCCATACGCGAACTCCATCTGACTGCATTACCCGAACCTGCCCAGGTTGTGGTGGAGCCTCCGAAACGCGCGACGCTCGCGGAGTCCTTCCGTGGCATCTATGCGAAGCGCACGATCATGCTCTTGATCTTTCAGTTCTTTCAGACGGTCGGTTTCTATGGTTTCGGCTCACTTGCTCCAATTATCCTGACCGCAAAAGGCTTCAGTGTCGTCAACACACTGGCGTATACCGCGCCGATTGCCCTTGGGTATCCTTTGGGATCATGGCTCTCAGTTCCCATCGTCGAGCGTATGGAGCGCAAGTGGTTGATTATTGGTACAGCTCTCTTGATGGCCCTCTTCGGTCTCATTTTTGGGTTCGCCACCTCGGTCCTGGTGATTATTGCCTCTGGTTTCCTGCTGACAGTGGCAAGTCAGGTTTTCTCCAACAGCTACCACATCTACCAGGCAGAGATTTTTCCGACGCGGATGCGCGGAACGGCGGTAGGAATTGCCTATAGCTTGAGTCGCCTCTCCGGCGGCATTCTCCCTTTTGTAGCGCTTCCCTTGCTACAAACCTCAGGTCCAGTGGCCGTGTTCACCGCTTGCGCCATCATTCTGGGTATCGTGAGCCTGGATGTGGGTTTGCTCGGTCCCAGGACGACAGGCCGGACACTGGAGGAAGTCGCTCACTGA > 633 LACBIDRAFT_304755 NA hypothetical_protein XP_001885131.1 NA MGYNAKIASNPYVVGSFACIGGGLFGLDISSMSGVLNNEAYLKQFHFPGPSAQGAIVAAMPAGSFLGALAVTQLADRIGRKKTIILAGIVWVMGSILQCASVNRGMLVVGRIISGISVGLASAVVPIYQSEITAPAIRGRMVSLQQWSITWGILIQYFVQFGCSYIDGVASFRIPWGLQMIPAIILSLGMLFFPESPRFLLDTGRDEKALQVLADLHGGGDKTNELVVLEYEEIKQQVLYERTQGAKSYLDLLKPGNPRRVMLGMSIQMWSQLSGMNVMMYYIVYVFQGAGLTGRRSNLIADSVQYILNVALTVPAIIYIDKWGRRPMLLTGTLLMGFWLFLVGGLQARFGHWGELNGNRVWAITDNSAATRAVIVCSYLFVCSFAITMGPVSWTYPAELYSLKVRGKAVSLATASNWAFNTALAFVVPPGLNTIAWKTYFIFGTFNFAAFIHILFMYPETVGRSLEEVEEIFKQGHTFAAWKIGKDVGKKTLEDVLPKTKQSPGGEDSIDKKSESA Hymenomycetidae Laccaria_bicolor_S238N-H82 Laccaria_bicolor_S238N-H82 XM_001885096 NA Martin,F.,_Aerts,A.,_Ahren,D.,_Brun,A.,_Danchin,E.G.,_Duchaussoy,F.,_Gibon,J.,_Kohler,A.,_Lindquist,E.,_Pereda,V.,_Salamov,A.,_Shapiro,H.J.,_Wuyts,J.,_Blaudez,D.,_Buee,M.,_Brokstein,P.,_Canback,B.,_Cohen,D.,_Courty,P.E.,_Coutinho,P.M.,_Delaruelle,C.,_Detter,J.C.,_Deveau,A.,_DiFazio,S.,_Duplessis,S.,_Fraissinet-Tachet,L.,_Lucic,E.,_Frey-Klett,P.,_Fourrey,C.,_Feussner,I.,_Gay,G.,_Grimwood,J.,_Hoegger,P.J.,_Jain,P.,_Kilaru,S.,_Labbe,J.,_Lin,Y.C.,_Legue,V.,_Le_Tacon,F.,_Marmeisse,R.,_Melayah,D.,_Montanini,B.,_Muratet,M.,_Nehls,U.,_Niculita-Hirzel,H.,_Oudot-Le_Secq,M.P.,_Peter,M.,_Quesneville,H.,_Rajashekar,B.,_Reich,M.,_Rouhier,N.,_Schmutz,J.,_Yin,T.,_Chalot,M.,_Henrissat,B.,_Kues,U.,_Lucas,S.,_Van_de_Peer,Y.,_Podila,G.K.,_Polle,A.,_Pukkila,P.J.,_Richardson,P.M.,_Rouze,P.,_Sanders,I.R.,_Stajich,J.E.,_Tunlid,A.,_Tuskan,G._and_Grigoriev,I.V. NA 0:1554 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001889900).COMPLETENESS:_incomplete_on_both_ends. NA 03-APR-2008 Laccaria_bicolor_S238N-H82_hypothetical_protein_partial_mRNA. NA Tricholomataceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Laccaria_bicolor_B0DM94_LACBS.gb Laccaria 170107842 Nature_452_(7183),_88-92_(2008) fungi XM_001885096 NA NA gill_mushrooms basidiomycetes 18322534 1554 NA mRNA NA S238N-H82 NA Laccaria_bicolor NA forward Agaricomycetidae NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 486041 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Agaricomycetidae,_Agaricales,_Tricholomataceae,_Laccaria The_genome_of_Laccaria_bicolor_provides_insights_into_mycorrhizal_symbiosis NA XM_001885096.1 ATGGGGTACAACGCGAAGATCGCTTCTAATCCGTATGTGGTGGGCTCGTTTGCATGTATCGGGGGAGGCCTTTTCGGTCTCGACATTTCATCAATGTCGGGCGTGCTCAACAATGAGGCATACCTGAAGCAGTTCCATTTCCCGGGTCCCTCTGCGCAGGGCGCTATTGTCGCGGCGATGCCTGCAGGTTCTTTTTTGGGTGCGCTCGCTGTCACTCAACTCGCAGATAGAATCGGCCGTAAAAAGACCATAATTCTCGCTGGTATAGTTTGGGTCATGGGCTCCATTTTGCAATGTGCTTCGGTGAACCGGGGAATGCTCGTAGTTGGCCGGATTATTTCTGGTATCTCCGTTGGTCTTGCTAGCGCCGTCGTTCCCATCTACCAATCGGAAATTACGGCTCCTGCTATCCGAGGTAGAATGGTCTCGTTGCAGCAATGGTCGATCACATGGGGCATTCTCATTCAATATTTTGTCCAATTCGGATGTTCGTACATCGATGGTGTAGCCTCCTTCCGCATACCGTGGGGCTTGCAGATGATTCCTGCTATAATCCTAAGTTTGGGAATGCTCTTCTTTCCTGAGAGCCCTCGTTTCCTTCTTGACACAGGCAGAGATGAAAAGGCTCTTCAAGTACTTGCGGACCTTCACGGCGGAGGAGACAAGACTAACGAGCTCGTGGTTCTAGAATATGAGGAAATCAAACAACAGGTGCTCTACGAGCGCACACAAGGTGCCAAGTCATATCTCGACCTTCTGAAGCCCGGTAACCCCCGGCGTGTCATGCTCGGCATGTCTATTCAGATGTGGTCTCAGCTGAGTGGAATGAACGTCATGATGTATTATATAGTTTACGTGTTCCAAGGTGCCGGCCTTACAGGTCGTCGCAGCAACCTCATTGCCGACTCTGTTCAATATATCCTCAATGTTGCCCTCACCGTTCCCGCTATCATATACATCGACAAGTGGGGCCGAAGGCCCATGCTTCTCACTGGTACTCTTCTCATGGGCTTTTGGCTGTTCCTTGTTGGCGGGCTTCAAGCGCGATTTGGCCACTGGGGCGAACTCAATGGAAATAGGGTCTGGGCTATAACCGACAATTCTGCCGCAACAAGAGCTGTCATTGTTTGTTCATACCTCTTCGTGTGCAGTTTTGCTATAACGATGGGACCGGTATCGTGGACTTACCCAGCTGAACTCTATTCTCTCAAAGTTCGAGGTAAAGCTGTGTCACTCGCAACCGCTAGTAACTGGGCGTTTAACACGGCGCTCGCCTTTGTGGTTCCACCCGGTCTAAATACCATAGCGTGGAAGACCTATTTCATTTTTGGAACATTCAACTTTGCGGCGTTCATTCACATTTTATTCATGTACCCGGAGACCGTGGGTAGGTCCCTGGAAGAAGTTGAAGAGATTTTCAAGCAGGGACACACATTCGCGGCGTGGAAGATTGGAAAGGATGTCGGGAAGAAAACACTCGAGGATGTTTTACCTAAGACAAAGCAATCACCAGGGGGCGAAGACTCAATTGACAAGAAGTCGGAGAGCGCATGA > 634 KLTH0B00484g weakly_similar_to_uniprot|Q12300_Saccharomyces_cerevisiae_YDL138W_RGT2_Plasma_membrane_glucose_receptor KLTH0B00484p XP_002551819.1 NA MTVEEKLNGEVTEVGDVASSDQSIKVAAVFKEYEPEKEVLSEVDQIIREYELEDHRELLTRGALWANNPGILETESYSDEDRRVAKQAQERPLSSLSKHMLLAALCTSCAAINFGMDESAIGGAVLQYQKQFNITDPNIQGLTVAAPYLAAACLGSPLTIYLDNYVGRKWIVFLSCFIGFAGSLIQGFSNGLGCLLFARLFLGIGMGLNSSTVPIYTAECSPAISRGAILMLWQTFIALGVCLGSVFNRAFVNISGSLSWRLMIGSSAVAPFVTGILIFFPPESPRWLIAHGKTRESLYSLMKLRPHELSGARDFYILHQSLKFESELENQLSSWQQFLSLFTNRRNRFALIVSLIGILGQQYGGVNILVSYTTTILTNAGVDSVTAIAGSIGIGGGCFLATFLSTQLIDRFGRRKMLLFTLPMEALCLFWLGGVLNVNDAQSRLGAGLASMYVYVLFYGAGIGPVSFTLVAETSSITVRMAHSATCMFVNWILDFCLSMTWPKMESSMTASGGLYFYGAFNIVVWILTFLCIPETMRFTLEQLDEIFKVGVSAHIKKSLHRIVRN Saccharomycetes Lachancea_thermotolerans_CBS_6340 Lachancea_thermotolerans_CBS_6340_(Kluyveromyces_thermotolerans_CBS_6340) XM_002551773 NA NA NA 0:1701 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_013078).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2009 Lachancea_thermotolerans_CBS_6340_KLTH0B00484p_(KLTH0B00484g)_mRNA,_complete_cds. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lachancea_thermotolerans_C5DC70_LACTC.gb Lachancea 255711071 Unpublished fungi XM_002551773 NA NA budding_yeasts sac_fungi NA 1701 B mRNA NA CBS_6340 NA Zygosaccharomyces_thermotolerans NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 559295 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Lachancea Comparative_genomics_of_protoploid_Saccharomycetaceae NA XM_002551773.1 ATGACAGTGGAAGAAAAGTTAAATGGGGAAGTTACAGAGGTTGGCGACGTTGCATCTTCTGATCAATCAATCAAAGTTGCAGCTGTCTTTAAAGAGTATGAGCCAGAAAAAGAAGTTCTTTCTGAGGTTGATCAAATTATAAGGGAATATGAATTGGAAGATCATCGAGAGCTGTTGACTCGGGGCGCATTGTGGGCTAATAACCCAGGTATCCTTGAGACCGAAAGCTACAGCGATGAAGACCGTCGAGTTGCTAAACAAGCGCAAGAAAGGCCACTTTCATCGCTATCTAAGCATATGCTGTTAGCCGCTCTATGTACCTCATGCGCAGCTATTAACTTCGGGATGGATGAAAGTGCGATTGGAGGTGCTGTTTTACAATACCAAAAGCAGTTCAATATCACTGATCCTAATATACAAGGTCTTACCGTTGCTGCTCCATACCTTGCTGCCGCTTGTTTGGGCTCCCCTCTTACTATCTACCTCGACAATTATGTGGGAAGAAAATGGATTGTTTTTTTGAGTTGCTTCATTGGATTTGCTGGGTCGCTCATCCAAGGGTTCTCGAATGGACTTGGCTGCCTTTTATTCGCGAGGTTGTTTCTTGGGATTGGAATGGGCTTGAACTCTTCCACTGTACCAATTTACACAGCCGAGTGTTCTCCAGCGATATCTCGCGGCGCCATTTTAATGCTATGGCAAACATTCATAGCGCTCGGTGTATGCTTGGGCTCGGTTTTCAATCGGGCTTTCGTCAATATAAGCGGATCACTTTCATGGCGCCTTATGATAGGGTCTTCGGCGGTTGCTCCATTCGTCACAGGAATTTTAATCTTTTTTCCACCTGAATCCCCAAGATGGCTTATCGCCCACGGCAAAACAAGAGAGTCTTTGTACTCATTAATGAAACTTAGACCTCACGAACTCTCGGGTGCGCGGGACTTTTACATTCTTCATCAATCCCTTAAGTTCGAGTCTGAATTAGAAAATCAGTTATCTTCTTGGCAGCAGTTTTTGTCTCTTTTCACTAACAGGAGAAACAGGTTCGCCTTAATCGTTTCACTGATTGGAATTCTGGGTCAGCAGTATGGAGGTGTCAACATCTTAGTATCTTATACAACAACAATTTTAACGAATGCCGGTGTTGACTCCGTTACAGCAATTGCAGGCTCAATTGGTATTGGAGGTGGTTGTTTCTTAGCAACATTTTTGTCGACGCAGCTGATTGACCGTTTTGGGAGAAGGAAAATGCTTCTATTTACTCTACCCATGGAGGCCTTGTGTTTATTTTGGTTGGGAGGTGTTCTCAACGTTAACGATGCACAAAGCAGACTGGGTGCAGGCCTGGCTTCAATGTATGTGTACGTTTTGTTTTACGGTGCTGGGATTGGACCTGTAAGCTTCACTTTGGTAGCTGAGACCTCGTCCATAACCGTGAGAATGGCACACAGTGCCACCTGTATGTTTGTGAATTGGATTCTAGACTTCTGTTTGAGCATGACATGGCCAAAAATGGAATCTTCAATGACAGCTTCAGGAGGTCTTTATTTCTACGGCGCTTTTAATATTGTTGTTTGGATTTTGACGTTCCTATGTATCCCAGAAACAATGCGCTTTACGCTGGAGCAGCTTGATGAAATATTCAAAGTGGGCGTTTCGGCTCACATTAAGAAATCTTTGCACAGGATAGTCCGCAACTAA > 635 KLTH0F06864g similar_to_uniprot|P25297_YML123C_Saccharomyces_cerevisiae_PHO84_High-affinity_inorganic_phosphate_(Pi)_transporter_and_low-affinity_manganese_transporter KLTH0F06864p XP_002554503.1 NA MSIEKQEEHVVHKTAGGNAAFHNFINDFAHIEDPLERRRLALQKIDEAAFGWYHVRAIMVAGVGFLTDSYDIFAINLGVSMLSYVFWKGDMPNSTSTLLKVSTSVGTVIGQLGFGIMADVVGRKKIYGLELIIMIAATILQCTIGAAPGVSFVAVLTFYRIIMGIGIGGDYPLSSIITSEFSTTKWRGAMMGAVFANQAFGQIAAGIVALILVAAYKSELIDANSGAECGAACIKACDQMWRILVGLGCFPGLIALYFRLTIPESPRYTLDVEHGINKASADIGKFTSGEHGNADPEEIARLERAPTAVEQFEIAPPKASFKDFCRHFGKWKYGKILFGTAFSWFTVDVAFYGLNLNSATILQTIGYASSKNVYHKLYNSAVGNLILICAGSLPGYWASVATMDIIGRKPIQLFGFFILTVLFCIIGFAYHKLSDHGLLGLYIVCQFFQQFGPNVTTFIIPGEVFPTRYRSSAHGISAASGKIGAIIAQTALGTLIDHNCARDGKPKNCWLPHVMEIFALFMLCGIFSTLLIPETKRKTLEQICEEYHDEVDQGKYASGYSGASSHTETV Saccharomycetes Lachancea_thermotolerans_CBS_6340 Lachancea_thermotolerans_CBS_6340_(Kluyveromyces_thermotolerans_CBS_6340) XM_002554457 NA NA NA 0:1713 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_013082).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2009 Lachancea_thermotolerans_CBS_6340_KLTH0F06864p_(KLTH0F06864g)_mRNA,_complete_cds. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lachancea_thermotolerans_C5DKR5_LACTC.gb Lachancea 255716443 Unpublished fungi XM_002554457 NA NA budding_yeasts sac_fungi NA 1713 F mRNA NA CBS_6340 NA Zygosaccharomyces_thermotolerans NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 559295 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Lachancea Comparative_genomics_of_protoploid_Saccharomycetaceae NA XM_002554457.1 ATGAGTATTGAAAAGCAAGAGGAACACGTCGTCCACAAGACCGCTGGTGGTAACGCTGCCTTCCACAACTTTATCAATGACTTCGCCCACATCGAGGACCCTCTTGAAAGAAGACGTTTGGCCCTGCAAAAGATTGACGAGGCCGCCTTTGGCTGGTACCACGTGCGTGCCATCATGGTCGCTGGTGTCGGGTTTTTGACCGACTCCTACGATATCTTTGCTATCAACTTGGGTGTGTCCATGTTGTCGTACGTCTTCTGGAAGGGTGACATGCCCAACTCTACCAGTACCCTTCTGAAGGTCTCCACCTCTGTTGGTACTGTCATTGGCCAGCTTGGTTTCGGTATTATGGCTGATGTTGTCGGCCGTAAGAAGATTTACGGTCTTGAACTGATCATTATGATTGCTGCCACCATTCTGCAGTGTACCATCGGTGCCGCTCCAGGTGTTAGCTTTGTCGCTGTCCTGACTTTCTACCGTATCATCATGGGTATTGGTATTGGTGGTGACTACCCTCTATCTTCTATTATCACTTCTGAGTTCTCGACCACCAAATGGAGAGGTGCCATGATGGGTGCTGTCTTTGCCAACCAGGCTTTCGGCCAGATCGCCGCTGGTATCGTCGCTTTGATTCTTGTCGCTGCTTACAAGAGCGAGCTTATCGACGCTAACTCTGGCGCTGAGTGTGGTGCTGCTTGTATCAAGGCTTGCGACCAGATGTGGAGAATTCTCGTTGGTTTGGGATGTTTTCCCGGTTTGATTGCTCTGTACTTCAGACTGACTATCCCAGAATCGCCACGTTACACTCTGGATGTTGAGCACGGCATTAACAAGGCTTCCGCCGACATCGGTAAGTTCACTTCCGGCGAGCACGGAAACGCTGACCCTGAGGAAATTGCCCGTCTCGAGAGAGCTCCAACCGCTGTCGAGCAATTCGAAATTGCACCACCAAAGGCTTCTTTCAAGGACTTCTGCAGACACTTCGGTAAGTGGAAGTACGGTAAGATTCTGTTCGGTACTGCCTTCTCTTGGTTCACTGTGGATGTTGCCTTCTACGGTTTGAACTTGAACTCCGCTACCATTTTGCAAACTATTGGTTACGCCTCTTCTAAGAACGTCTACCACAAGCTTTACAACTCCGCTGTCGGTAACTTGATTCTGATCTGTGCCGGTTCTCTGCCAGGTTACTGGGCCTCCGTTGCCACCATGGACATCATTGGAAGAAAGCCTATCCAACTCTTCGGCTTCTTCATCCTAACTGTTTTGTTCTGTATCATCGGTTTTGCTTACCACAAGTTGAGTGACCACGGTCTATTGGGTCTCTACATTGTGTGTCAATTCTTCCAACAATTCGGTCCTAACGTTACCACCTTCATTATCCCAGGTGAAGTGTTCCCAACTAGATACAGATCTTCCGCTCACGGTATCTCTGCCGCCTCCGGTAAAATTGGTGCTATCATCGCTCAGACCGCTTTGGGTACGTTGATCGACCACAACTGTGCGAGAGATGGTAAGCCAAAGAACTGTTGGTTGCCACATGTCATGGAGATCTTTGCTCTGTTCATGCTGTGCGGTATCTTCAGTACTTTGCTGATCCCTGAGACCAAGAGAAAGACACTGGAGCAAATCTGTGAGGAGTATCACGATGAGGTTGACCAAGGAAAGTACGCCTCTGGTTACTCTGGCGCTTCTAGTCACACTGAGACTGTTTAA > 636 KLTH0H00308g weakly_similar_to_uniprot|Q12300_Saccharomyces_cerevisiae_YDL138W_RGT2_Plasma_membrane_glucose_receptor KLTH0H00308p XP_002555893.1 NA MGFLQKVFLAEEDIQGSKFRAIFIGLFVAFGGVLFGYDTGTISGILAMKYVKEHFTHRGSFTAGETSLITSILSAGTFVGAISAPLVSDTMGRRFGLIASTIVFSIGVILQVAATGQDLLIVGRVIAGLGVGILSAIVPLYQSEAAPKWIRGAVVSCYQGAITVGLLLAACVNQGTHARTDSGSYRIPIAIQFAWALILFVGMIVLPESPRFYVKQGKIEKAGNALSRLRGLPADHPIVEGELEEILANFNYEKSLGSTTVWDCFKRGNHQLKRMLIGLAIQALQQLTGINFIFYYGTQFFQNSGIKNPFIIQVIMNVVNVVMTWPGVLLVELAGRRNLLLWGAVGMCVSELIVASVGTALPDSTAANKTLIAFSCTFIASFAATWGPLAWVVVGEIYPLRVRGKSVALCAASNWLFNFAIAYATPYLVDQEHANLQSKVFFIWGGCTFLCFLFVYFFIYETKGLTLEQIDELFETCTSAPDSKNFIPSSGYAHESPDAEKAVVEAVEKV Saccharomycetes Lachancea_thermotolerans_CBS_6340 Lachancea_thermotolerans_CBS_6340_(Kluyveromyces_thermotolerans_CBS_6340) XM_002555847 NA NA NA 0:1533 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_013084).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2009 Lachancea_thermotolerans_CBS_6340_KLTH0H00308p_(KLTH0H00308g)_mRNA,_complete_cds. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lachancea_thermotolerans_C5E1X0_LACTC.gb Lachancea 255719225 Unpublished fungi XM_002555847 NA NA budding_yeasts sac_fungi NA 1533 H mRNA NA CBS_6340 NA Zygosaccharomyces_thermotolerans NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 559295 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Lachancea Comparative_genomics_of_protoploid_Saccharomycetaceae NA XM_002555847.1 ATGGGTTTTCTACAAAAGGTATTTCTCGCAGAGGAGGACATACAAGGCTCGAAGTTCCGGGCGATATTCATCGGCCTGTTCGTCGCCTTTGGCGGTGTTCTGTTCGGGTACGACACAGGCACGATATCCGGAATTCTGGCTATGAAATATGTTAAGGAGCACTTCACGCATCGCGGTAGCTTCACTGCCGGGGAAACATCACTCATCACATCCATTCTTTCCGCGGGAACTTTTGTTGGTGCAATCAGCGCGCCGCTCGTTTCCGACACCATGGGCCGGCGATTCGGCCTCATCGCTTCAACTATTGTTTTCTCCATAGGCGTAATTCTGCAAGTTGCGGCCACAGGCCAAGACCTCTTAATTGTCGGAAGAGTTATTGCAGGCCTTGGTGTTGGTATTTTGTCCGCGATTGTCCCTCTTTACCAATCTGAGGCAGCTCCTAAGTGGATAAGAGGTGCAGTGGTTTCTTGTTACCAAGGAGCTATTACCGTTGGGTTGCTGCTCGCAGCCTGTGTCAACCAAGGCACACATGCCAGAACAGACAGTGGATCTTACAGAATACCCATCGCTATCCAATTTGCATGGGCGTTGATCTTGTTTGTTGGTATGATAGTCTTACCAGAATCCCCAAGATTTTATGTAAAGCAGGGGAAAATTGAAAAGGCAGGAAACGCATTATCTCGCTTAAGAGGTCTACCAGCAGATCATCCGATTGTTGAAGGTGAACTTGAGGAGATCCTCGCTAACTTTAATTATGAGAAATCTCTCGGTTCTACAACAGTATGGGACTGTTTTAAACGCGGCAATCACCAGCTAAAGCGTATGCTTATCGGCCTTGCAATCCAGGCACTCCAGCAACTCACTGGTATTAATTTCATTTTCTACTACGGAACTCAGTTTTTTCAAAACTCCGGTATTAAAAACCCCTTCATCATTCAGGTTATTATGAATGTTGTTAACGTTGTGATGACTTGGCCCGGCGTTTTGTTAGTTGAGCTCGCAGGAAGAAGGAACTTGCTGCTATGGGGCGCTGTCGGTATGTGCGTCAGCGAGTTGATTGTCGCGTCTGTTGGTACTGCACTTCCTGATAGCACGGCTGCAAACAAAACATTAATTGCATTTTCCTGCACTTTCATTGCCTCATTCGCCGCAACTTGGGGTCCCTTGGCTTGGGTTGTGGTGGGTGAAATATATCCGCTAAGAGTGAGAGGTAAGTCGGTTGCTTTATGCGCTGCCTCTAATTGGCTATTCAATTTCGCGATCGCCTATGCCACGCCATATCTTGTAGACCAAGAGCATGCAAACCTTCAGTCAAAAGTGTTCTTTATCTGGGGTGGCTGTACATTCCTCTGCTTTCTATTTGTCTACTTTTTCATCTACGAGACGAAAGGCCTCACCTTGGAACAAATTGATGAGTTGTTTGAAACTTGCACAAGTGCCCCTGACTCCAAAAACTTCATTCCATCTAGTGGATATGCCCATGAGTCTCCAGATGCTGAGAAGGCAGTTGTGGAAGCTGTCGAGAAAGTCTAA > 637 HMPREF0496_0070 COG:_COG0477;_Pfam:_PF00083;_InterPro:_IPR005828 MFS_family_major_facilitator_transporter EEI72688.1 11 MEDTSTTAVDSTQESTVTLQRDPVRTVILASMIGTAIEFFDFYAYGTAAATYFPKVFFPKVTPAIALILSLLTFGVAFIARPLGSLVFGHFGDKLGRKKTLVVSLLTMGTATVVIGVLPSYATLGILSVLLLCLARFIQGIGLGGEWSGAVLVATENAPANKRALYGAFPELGAPIGFFLSNGLYFVLESTLKPAQMQAFGWRIPFLASAVLVIVGLVVREKMQETPLFRLAMDKSKVQKSPLAQVFKHNWAEILKGTFIMGVAYTFFYLLTTWSLSYVTTAMSFNNREWLLLLMLGVVLFGVMIVVASLFADRIGRKKVLVTGTVMIIAFALIFPFFFQGQHNLAGGLFFIFVGFFIYGIIYGPVGALLPELFPTSTRYSGSGIAYNLAAIIGAAFAPTIAAFLVDKWGIHSVGFYLALMACVSLIALLTTKETKSIDYTK Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_brevis_subsp._gravesensis_ATCC_27305 Lactobacillus_brevis_subsp._gravesensis_ATCC_27305 ACGG01000004 13234..14562 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1329 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_ATCC._The_genomic_DNA_wasprepared_from_a_single_bacterial_isolate._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data,_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data_and_at_least_10_fold_coverage_ofIllumina/Solexa_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_to_the_Illumina/Solexa_data_withmapping_tools_such_as_Mosaic_and_Crossmatch_and_these_data_wereused_for_error_correction_for_this_version_of_the_draft_assembly.This_draft_assembly_meets_the_HMP_draft_quality_standards_(morethan_90%_of_the_genome_is_included_in_contigs,_more_than_90%_of_acore_set_of_bacterial_genes_are_found_with_>_30%_identity_and_>_30%length;_more_than_90%_of_the_bases_in_the_assembly_have_more_than_5fold_sequence_coverage,_the_contig_N50_length_is_greater_than_5kb,the_scaffold_N50_length_is_greater_than_20kb,_and_there_is_lessthan_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_29xSequencing_Technology:_454;_ABI;_Solexa/IlluminaAnnotation_was_added_to_the_contigs_in_April_2009. NA 21-APR-2009 Lactobacillus_brevis_subsp._gravesensis_ATCC_27305_contig00006,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_brevis_C2CXP8_LACBR.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 223555575 Submitted_(08-JAN-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACGG01000004 NA NA Lactobacillales low_GC_Gram+ NA 1329 NA genomic_DNA NA ATCC_27305 NA Lactobacterium_breve NA complement NA NA NA NA NA NA Lactobacillus_brevis_subsp._gravesensis NA NA NA prokaryotes NA 525310 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Direct_Submission NA ACGG01000004.1 TTATTTTGTATAATCAATTGATTTCGTTTCCTTGGTTGTCAATAAAGCAATTAATGAAACACAAGCCATCAATGCCAAATAGAAACCAACAGAATGGATTCCCCATTTATCAACAAGGAACGCTGCAATTGTTGGCGCAAACGCGGCACCAATGATAGCTGCCAGGTTGTAGGCAATTCCGGAACCGGAATAACGGGTACTGGTTGGGAATAATTCTGGCAATAATGCACCAACCGGTCCATAGATAATACCATAAATAAAGAAACCAACAAAGATGAAGAACAAACCGCCAGCGAGGTTATGTTGTCCCTGGAAAAAGAATGGGAAGATCAATGCAAAGGCAATAATCATCACAGTTCCTGTGACCAAAACCTTTTTTCGACCAATTCGATCGGCAAATAATGAGGCCACAACAATCATAACACCGAACAAAACAACACCAAGCATTAGCAGCAACAACCACTCACGGTTATTAAAGCTCATTGCGGTTGTGACGTAACTTAATGACCAAGTTGTCAACAGGTAGAAGAAGGTGTAGGCAACACCCATAATGAAAGTTCCTTTAAGGATTTCAGCCCAATTATGTTTAAAGACTTGAGCCAATGGGGATTTTTGAACCTTGGACTTATCCATTGCCAAACGGAATAGTGGTGTTTCCTGCATTTTTTCACGAACAACCAATCCAACAATAACCAGGACAGCTGATGCAAGAAACGGAATGCGCCAACCAAAGGCTTGCATTTGTGCCGGCTTCAAGGTTGACTCAAGAACAAAGTAAAGTCCGTTGCTTAAGAAGAAACCGATTGGGGCACCTAATTCGGGAAAGGCTCCATAAAGGGCACGCTTATTAGCTGGTGCGTTTTCAGTCGCAACTAAAACGGCACCGGACCATTCACCGCCAAGCCCAATTCCTTGAATGAAGCGAGCCAGGCAAAGTAATAAGACTGATAGGATGCCCAATGTTGCATAACTTGGCAACACTCCAATCACAACGGTGGCGGTACCCATTGTCAATAGTGACACAACCAAGGTTTTCTTTCTTCCCAATTTATCACCAAAGTGACCAAATACTAGTGAGCCAAGGGGTCTTGCAATAAAGGCAACACCAAATGTTAAAAGGCTCAAAATAAGGGCAATCGCTGGGGTCACTTTCGGGAAAAAGACTTTCGGGAAATATGTAGCTGCTGCGGTACCATAAGCATAAAAATCAAAAAATTCAATTGCCGTTCCGATCATTGAAGCTAAAATAACTGTTCTTACAGGATCTCTTTGTAAAGTGACAGTCGATTCTTGTGTGGAATCAACTGCTGTCGTAGACGTATCTTCCAT > 638 NA NA D-xylose_proton-symporter AAC95127.1 11 MRKVSTGFVYFFGALGGLLFGYDTGVISGAILFIQKQMNLGSWQQGWVVSAVLLGAILGAAIIGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLAELAPSDKRGTVSSLFQLMVMTGILLAYITNYSFSGFYTGWRWMLGFAAIPAALLFLGGLILPESPRFLVKSGHLDEARHVLDTMNKHDQVAVNKEINDIQESAKIVSGGWSELFGKMVRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGFGVSAALLAHIGIGIFNVIVTAIAVAIMDKIDRKKIVNIGAVGMGISLFVMSIGMKFSGGSQTAAIISVIALTVYIAFFSATWGPVMWVMIGEVFPLNIRGLGNSFASVINWTANMIVSLTFPSLLDFFGTGSLFIGYGILCFASIWFVQKKVFETRNRSLEDIEATLRAKTGEDAAELSTTK Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_brevis Lactobacillus_brevis AF045552 4454..5827 Chaillou,S.,_Bor,Y.C.,_Batt,C.A.,_Postma,P.W._and_Pouwels,P.H. NA 0:1374 NA NA 12-DEC-1998 Lactobacillus_brevis_xyl_operon_and_xylose_isomerase_(xylA),_xylulokinase_(xylB),_and_D-xylose_proton-symporter_(xylT)_genes,_complete_cds. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_brevis_XYLT_LACBR.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 2895853 Appl._Environ._Microbiol._64_(12),_4720-4728_(1998) NA AF045552 NA NA Lactobacillales low_GC_Gram+ 9835554 1374 NA genomic_DNA NA NA NA Lactobacterium_breve NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 1580 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Molecular_cloning_and_functional_expression_in_lactobacillus_plantarum_80_of_xylT,_encoding_the_D-xylose-H+_symporter_of_Lactobacillus_brevis NA AF045552.1 ATGCGAAAAGTTTCGACCGGATTTGTTTACTTCTTCGGAGCGCTGGGTGGGTTACTTTTTGGGTATGACACTGGGGTTATTTCCGGAGCTATTCTCTTTATTCAGAAACAGATGAACTTAGGATCTTGGCAACAAGGCTGGGTCGTTAGTGCGGTTTTGTTAGGGGCCATTTTAGGGGCTGCCATCATTGGGCCTTCGTCTGACCGATTTGGTCGGCGGAAATTATTACTGCTTTCTGCTATTATTTTCTTCGTTGGGGCGTTAGGTTCCGCCTTTTCACCAGAGTTTTGGACGTTAATTATCTCCCGAATTATCCTGGGGATGGCCGTTGGGGCTGCTTCAGCATTGATTCCGACGTATTTGGCTGAATTGGCACCGTCTGATAAGCGAGGAACGGTTTCCAGTCTATTTCAGTTAATGGTTATGACTGGGATTCTCTTGGCCTACATCACGAACTACAGTTTCTCAGGTTTCTATACCGGCTGGCGGTGGATGTTAGGTTTCGCGGCAATTCCTGCTGCTTTGCTGTTCTTGGGTGGGCTAATTCTCCCCGAGAGTCCCCGGTTCTTGGTTAAGAGTGGGCATCTGGATGAAGCTCGGCACGTGCTAGACACCATGAACAAGCATGACCAAGTGGCGGTCAATAAAGAAATTAATGATATTCAAGAATCCGCTAAAATTGTGAGCGGTGGTTGGTCAGAGTTATTTGGTAAGATGGTTCGGCCTTCATTGATCATCGGGATTGGTTTAGCCATTTTCCAACAGGTGATGGGCTGTAACACGGTACTGTACTACGCACCAACAATCTTCACGGATGTTGGCTTCGGAGTTTCAGCCGCACTGTTAGCGCATATTGGAATTGGGATCTTTAACGTGATTGTGACCGCGATTGCGGTAGCCATCATGGATAAGATCGACCGGAAAAAGATCGTAAATATTGGTGCTGTTGGGATGGGAATCTCCCTGTTCGTTATGAGCATCGGGATGAAGTTCTCAGGTGGGTCACAGACCGCGGCAATCATCTCTGTGATTGCTTTGACAGTTTACATCGCCTTCTTCTCCGCAACTTGGGGTCCTGTAATGTGGGTCATGATTGGGGAAGTCTTCCCATTGAACATTCGGGGCTTAGGTAACTCCTTTGCTAGTGTGATCAACTGGACAGCAAACATGATTGTTTCCTTGACGTTCCCATCTCTGTTGGACTTCTTTGGAACCGGGAGCTTGTTCATTGGTTACGGGATTCTCTGCTTTGCTTCCATCTGGTTCGTCCAAAAGAAAGTGTTCGAAACACGGAATCGGTCTTTGGAAGATATCGAAGCCACCTTACGTGCTAAGACAGGCGAAGATGCTGCTGAACTAAGCACGACCAAATAA > 639 LCABL_19770 AA_sequence:Uniprot:A5YBJ2_LACCA protein_IolT YP_001987913.1 11 MYQSKTHNHRFTGHLASAKTRLRLVALISTMGGLLFGYDTGVINGALPFISSELKLAPGSQGWVTSSLTLGAAFGAILVGRLSDRYGRRRLITMLAGLFFLATVASSLSPSAGWLIGARLILGLAVGGVSVLVPSFLAEIAPTSHRGRLVTQNELMVVTGQLLAFVLNAFLGTTFGNVPGIWRWMIVLAVIPAIILGIGTYFVPESPRWLMMKGRPAAARSSLEVLRSAAEVPAEIDHLKQNLAEDAKHKQASVRALKTKWIRRLVLIGIGLGVIQQIAGINVMMYYGTSILQMTGFGRDSALIANIANGVTAVAATIVTLQLLKHVPRRPMLIVGLIGSTVAITGVTFASRLPAGSPFRAFATIGMMMLFLAFFQGAISPMTWLLMSEIFPEQVRGIGMGAATFCLWLANFGVGVLFPIGLAQIGMFWTFVCFIGTNLISLLFVLIFVPETAGRSLETLHREEKARLNH Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_casei_BL23 Lactobacillus_casei_BL23 NC_010999 1914553..1915965 Maze,A.,_Boel,G.,_Zuniga,M.,_Bourand,A.,_Loux,V.,_Yebra,M.J.,_Monedero,V.,_Correia,K.,_Jacques,N.,_Beaufils,S.,_Poncet,S.,_Joyet,P.,_Milohanic,E.,_Casaregola,S.,_Auffray,Y.,_Perez-Martinez,G.,_Gibrat,J.F.,_Zagorec,M.,_Francke,C.,_Hartke,A._and_Deutscher,J. NA 0:1413 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_FM177140.Source_DNA_and_bacteria_available_from_Josef_Deutscher(josef.deutscher@grignon.inra.fr)_or_Manuel_Zuniga(btcman@iata.csic.es)_Finishing_done_by_lactobacillus_casei_BL23sequencing_consortium_Automatic_Annotation_done_by_INRA-MIG_withAgmialURL_http://genome.jouy.inra.fr/agmial.COMPLETENESS:_full_length. NA 25-JAN-2012 Lactobacillus_casei_BL23_chromosome,_complete_genome. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_casei_B3WFA4_LACCB.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 191636824 J._Bacteriol._192_(10),_2647-2648_(2010) NA NC_010999 NA NA Lactobacillales low_GC_Gram+ 20348264 1413 NA genomic_DNA NA BL23 NA Streptobacterium_casei NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 543734 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Complete_genome_sequence_of_the_probiotic_lactobacillus_casei_strain_BL23 NA NC_010999.1 TTAATGATTTAAGCGGGCTTTCTCCTCTCGGTGCAAAGTTTCGAGGGAGCGTCCAGCCGTTTCCGGCACAAAAATCAGAACGAAAAGCAATGAAATCAAATTTGTCCCGATGAAGCAAACGAATGTCCAGAACATGCCTATTTGGGCCAGACCAATCGGGAACAGAACGCCAACACCAAAGTTAGCTAACCACAAGCAGAAGGTTGCAGCGCCCATCCCTATGCCCCGAACCTGTTCAGGGAAGATTTCAGACATCAGCAGCCAAGTCATTGGACTGATAGCGCCTTGGAAGAACGCCAAGAACAGCATCATCATCCCGATTGTCGCAAATGCCCGGAATGGCGAACCCGCTGGTAGTCGACTAGCGAAGGTGACACCAGTAATCGCCACGGTTGAGCCAATCAATCCCACAATCAGCATTGGCCGCCGCGGAACATGCTTCAACAATTGCAACGTCACAATCGTTGCAGCAACGGCAGTAACCCCATTGGCAATGTTGGCGATCAAGGCGCTATCTCGCCCAAAACCCGTCATTTGTAAAATTGAGGTGCCATAATACATCATGACATTGATACCAGCAATTTGCTGAATGACGCCTAGGCCGATGCCAATCAGAACCAGTCGGCGAATCCATTTGGTTTTCAATGCTCGAACACTCGCCTGCTTATGTTTAGCATCTTCGGCAAGATTCTGTTTCAAATGGTCAATCTCTGCTGGCACTTCAGCAGCAGATCGCAACACTTCCAAACTTGAACGTGCTGCTGCCGGCCGTCCTTTCATCATTAACCAACGAGGAGATTCCGGAACAAAATAAGTCCCGATACCTAAGATAATTGCCGGAATGACTGCCAATACAATCATCCAGCGCCAGATACCAGGAACGTTACCAAAAGTGGTTCCTAAAAAGGCATTGAGAACAAAAGCAAGTAACTGGCCAGTCACGACCATCAGCTCATTTTGTGTGACTAACCGCCCACGATGACTCGTTGGGGCAATCTCTGCTAAAAAGCTTGGAACCAGCACAGAGACGCCGCCAACGGCTAATCCAAGGATCAGCCGTGCGCCAATCAGCCAGCCAGCACTCGGGGAAAGTGACGAGGCTACCGTTGCCAGAAAAAATAAGCCCGCTAACATGGTGATGAGCCGCCTGCGCCCATAGCGATCACTTAAACGACCGACTAAGATAGCACCAAAAGCAGCACCCAGCGTCAAGCTACTGGTGACCCAACCCTGTGATCCAGGGGCAAGTTTCAGTTCCGAAGAAATAAAAGGCAATGCGCCATTGATCACCCCAGTGTCATAGCCAAAAAGCAGGCCACCCATCGTTGAAATCAATGCTACTAGCCGCAACCGTGTCTTCGCACTCGCAAGGTGACCGGTAAATCGATGATTGTGTGTTTTTGATTGATACAT > 640 HMPREF0513_01102 NA D-xylose_transporter EEX25336.1 11 MKKVSTNFIYFFGALGGLLFGYDTGVISGAILFIEKQMHLGSWGQGIVVSGVLLGAMIGSLVIGPSSDRYGRRKLLLLSSIIFIIGGLGCAFASNALILILFRVVLGLAVGAASSMVPTYLAELSPAVKRGVVSSLFQVMVMTGIFLAYVVNWGLQGFYTGWRWMLGLAALPATIMFLGGLFLPESPRYLVKIGKLDEAKAVLININKGDQQAVNVDLEKITEQVNMKNEGLKELFGPMVRPALIAAIGLTIFQQVMGCNTVLYYAPTIFTDVGFGVNAALLAHLGIGIFNVIVTIIAMSLMDKIDRKKMLIWGGLGMGISLFVMSLGMKFSGGSKTAAIICVLAMTIYIAFFSATWGPVMWVMLGEIFPLNIRGLGNSFGSFVNWFANMIVSLTFPFLLDFFGTGSLFIGYGVLCFLGIWFVHTMVFETRGRSLEDIEESLREKATAKDGKALKTATK Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_fermentum_28-3-CHN Lactobacillus_fermentum_28-3-CHN GG704703 4740..6119 Ward,D.,_Feldgarden,M.,_Earl,A.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Bochicchio,J.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Liu,Y.,_Xu,Q.,_Haas,B.,_Nusbaum,C._and_Birren,B. NA 0:1380 This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Source_DNA_provided_by_Qiang_Xu,_and_Yang_Liu_(Osel_Inc.,_4008Burton_Drive,_Santa_Clara,_CA_95054).Bacteria_provided_by_Qiang_Xu,_and_Yang_Liu_(Osel_Inc.,_4008_BurtonDrive,_Santa_Clara,_CA_95054).Genome_Coverage:_34.99xSequencing_Technology:_454. NA 05-OCT-2009 Lactobacillus_fermentum_28-3-CHN_genomic_scaffold_supercont1.5,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_fermentum_D0DTW3_LACFE.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 260552281 Unpublished NA GG704703 NA NA Lactobacillales low_GC_Gram+ NA 1380 NA genomic_DNA NA 28-3-CHN NA Lactobacterium_fermentum NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 575599 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus The_Genome_Sequence_of_Lactobacillus_fermentum_28-3-CHN NA GG704703.1 ATGAAAAAAGTTTCTACCAACTTCATCTACTTCTTTGGCGCACTTGGGGGGCTCCTCTTCGGTTACGATACTGGGGTCATCTCCGGGGCAATCCTCTTCATCGAAAAGCAAATGCACCTTGGCTCCTGGGGGCAAGGAATAGTTGTTTCCGGGGTGCTGCTCGGCGCAATGATCGGGTCTCTGGTCATTGGGCCAAGTTCTGACCGCTATGGCCGGCGAAAGTTACTCTTGCTATCATCTATTATCTTTATTATTGGTGGTTTAGGCTGTGCGTTCGCTTCTAACGCCTTAATCTTAATTTTATTCCGGGTCGTCCTTGGTTTAGCCGTGGGGGCTGCCTCCTCAATGGTGCCTACTTATTTAGCCGAACTTTCTCCCGCCGTTAAACGCGGGGTTGTTTCCTCTCTCTTCCAAGTGATGGTGATGACCGGTATCTTCCTAGCATACGTTGTTAACTGGGGGTTGCAAGGCTTCTACACCGGTTGGCGTTGGATGCTGGGGTTGGCTGCCCTGCCGGCTACCATCATGTTCTTAGGGGGGCTTTTTCTTCCCGAATCTCCCCGCTACCTCGTCAAAATCGGCAAATTAGACGAGGCCAAAGCAGTCTTAATAAATATTAACAAGGGTGACCAACAAGCGGTCAACGTTGACTTAGAGAAGATCACCGAACAGGTCAATATGAAAAACGAAGGACTTAAAGAGCTCTTTGGGCCAATGGTTCGTCCTGCATTGATCGCCGCCATCGGTTTAACCATCTTCCAACAGGTAATGGGGTGCAACACCGTTCTGTATTACGCACCGACCATCTTTACTGACGTCGGTTTCGGGGTTAATGCCGCCCTCTTAGCTCACCTAGGGATTGGAATCTTCAACGTCATTGTTACCATTATTGCCATGTCCTTAATGGATAAGATCGACCGCAAGAAGATGTTAATCTGGGGTGGTCTCGGGATGGGGATCTCCCTGTTCGTTATGAGCCTTGGAATGAAGTTCTCCGGTGGTTCCAAAACGGCTGCCATCATTTGTGTCCTCGCTATGACCATCTACATCGCCTTTTTCTCTGCTACCTGGGGACCCGTGATGTGGGTGATGCTCGGGGAAATCTTCCCGCTCAACATTCGTGGCCTCGGTAACTCATTTGGCTCCTTTGTCAACTGGTTTGCCAACATGATCGTTTCCCTCACCTTCCCGTTTTTACTGGATTTCTTTGGAACCGGGAGTCTTTTCATCGGTTATGGGGTACTTTGCTTCCTTGGAATCTGGTTTGTTCACACCATGGTTTTCGAAACCCGTGGGCGTTCCTTAGAAGACATTGAAGAAAGCCTGCGGGAAAAAGCAACCGCCAAAGATGGAAAAGCTCTAAAAACCGCCACTAAGTAA > 641 HMPREF0513_01269 NA major_facilitator_transporter EEX25503.1 11 MEEISNTYSLTEAKVAKMERDPVKTVIMASMIGTAIEFFDFYAYGTAAATYFPNVFFPSVTPTIAMILSLLTFGVAFLARPLGSLLFGHFGDKLGRKRALVVSLLMMGLSTVVIGFLPGYRTLGMTAILLLCLARFIQGIGLGGEWSGAVLVATENAPKGKRALFGSFTELGAPIGFFLSNGLYVILETVLTKSQMVEFGWRVPFVASAVLVVFGLWVRRKMQETPLFRLAQKRDNVKKAPLAQVFTKSWKQILQGTFIMAISYTFFFLLSTWSLSYGTAVLGFDSREFLMLLMGSIVVFAGMIVYSSILSDRFGRRTVLLAGTAAIFVFSFVFPFFFQGHQNVVGTLFFLLVGFLAMGVIYGPVGAMLPELFPTSTRYSGAGIAYNMSAIVGAAFAPTIASWLVGQWGIHAVGYYLAFMSLVSIVALLLTKETKSVDYTK Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_fermentum_28-3-CHN Lactobacillus_fermentum_28-3-CHN GG704703 192378..193703 Ward,D.,_Feldgarden,M.,_Earl,A.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Bochicchio,J.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Liu,Y.,_Xu,Q.,_Haas,B.,_Nusbaum,C._and_Birren,B. NA 0:1326 This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Source_DNA_provided_by_Qiang_Xu,_and_Yang_Liu_(Osel_Inc.,_4008Burton_Drive,_Santa_Clara,_CA_95054).Bacteria_provided_by_Qiang_Xu,_and_Yang_Liu_(Osel_Inc.,_4008_BurtonDrive,_Santa_Clara,_CA_95054).Genome_Coverage:_34.99xSequencing_Technology:_454. NA 05-OCT-2009 Lactobacillus_fermentum_28-3-CHN_genomic_scaffold_supercont1.5,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_fermentum_D0DUD0_LACFE.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 260552281 Unpublished NA GG704703 NA NA Lactobacillales low_GC_Gram+ NA 1326 NA genomic_DNA NA 28-3-CHN NA Lactobacterium_fermentum NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 575599 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus The_Genome_Sequence_of_Lactobacillus_fermentum_28-3-CHN NA GG704703.1 ATGGAAGAAATATCAAATACATATTCTTTAACAGAAGCAAAAGTTGCCAAAATGGAACGAGATCCAGTTAAAACTGTCATTATGGCATCTATGATTGGAACCGCAATTGAATTTTTTGACTTTTACGCATACGGTACTGCCGCAGCAACATATTTTCCAAACGTCTTTTTCCCATCAGTAACCCCAACAATCGCAATGATCCTTAGTTTACTGACATTCGGAGTTGCGTTTTTAGCTCGCCCTCTAGGGTCGCTATTATTTGGTCACTTTGGCGATAAGTTAGGTCGTAAGCGGGCATTAGTTGTCTCATTGCTGATGATGGGGCTATCTACCGTTGTCATTGGTTTTCTTCCCGGTTACAGAACTTTGGGAATGACTGCAATTTTACTTCTATGTTTAGCAAGATTTATTCAGGGCATTGGTCTTGGTGGTGAATGGTCAGGGGCCGTTTTAGTTGCCACTGAGAACGCTCCAAAGGGTAAGCGGGCACTATTTGGTTCGTTTACTGAACTGGGTGCTCCAATTGGATTCTTTTTGAGTAACGGTTTATACGTTATTTTGGAAACAGTATTGACCAAGTCACAGATGGTAGAATTTGGTTGGCGGGTACCATTCGTTGCCTCAGCTGTTCTGGTTGTCTTCGGACTTTGGGTGAGAAGAAAGATGCAAGAAACTCCATTATTCCGATTGGCTCAAAAACGGGATAACGTCAAAAAAGCACCATTGGCACAGGTATTCACTAAGAGCTGGAAACAAATCCTCCAAGGAACATTTATTATGGCTATTTCCTACACGTTCTTCTTTCTACTTTCAACTTGGTCATTGAGTTATGGAACTGCCGTACTTGGATTTGATAGCCGTGAATTCTTGATGTTATTGATGGGATCAATCGTTGTATTTGCCGGAATGATTGTTTATTCGTCAATTTTGTCAGACCGATTTGGCCGCAGAACAGTATTGCTTGCAGGAACTGCAGCCATCTTCGTATTCTCGTTTGTATTTCCATTCTTTTTCCAAGGACACCAAAACGTTGTTGGAACTTTATTCTTCTTATTGGTTGGTTTCTTAGCAATGGGAGTTATCTATGGTCCAGTTGGTGCAATGCTGCCTGAACTCTTCCCAACAAGTACAAGGTATTCAGGTGCTGGAATTGCTTACAATATGTCCGCTATCGTTGGTGCTGCTTTTGCCCCAACTATTGCATCTTGGTTAGTTGGACAATGGGGGATCCACGCAGTTGGTTACTACCTTGCATTTATGAGTTTGGTCTCAATCGTTGCTTTACTTTTGACAAAGGAAACCAAATCAGTGGATTACACTAAGTAA > 642 LC40_0175 NA Major_facilitator_transporter ADJ40828.1 11 MEEISNTYSLTEAKVAKMERDPVKTVIMASMIGTAIEFFDFYAYGTAAATYFPNVFFPSVTPTIAMILSLLTFGVAFLARPLGSLLFGHFGDKLGRKRALVVSLLMMGLSTVVIGFLPGYRTLGMTAILLLCLARFIQGIGLGGEWSGAVLVATENAPKGKRALFGSFTELGAPIGFFLSNGLYVILETVLTKSQMVEFGWRVPFVASAVLVVFGLWVRRKMQETPLFRLAQKRDNVKKAPLAQVFTKSWKQILQGTFIMAISYTFFFLLSTWSLSYGTAVLGFDSREFLMLLMGSIVVFAGMIVYSSILSDRFGRRTVLLAGTAAIFVFSFVFPFFFQGHQNVVGTLFFLLVGFLAMGVIYGPVGAMLPELFPTSTRYSGAGIAYNMSAIVGAAFAPTIASWLVGQWGIHAVGYYLAFMSLVSIVALLLTKETKSVDYTK Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_fermentum_CECT_5716 Lactobacillus_fermentum_CECT_5716 CP002033 298146..299471 Jimenez,E.,_Langa,S.,_Martin,V.,_Arroyo,R.,_Martin,R.,_Fernandez,L._and_Rodriguez,J.M. NA 0:1326 Source_DNA_is_available_from_Juan_Miguel_Rodriguez,jmrodrig@vet.ucm.es_of_the_Universidad_Complutense_de_Madrid. NA 30-AUG-2010 Lactobacillus_fermentum_CECT_5716,_complete_genome. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_fermentum_D8IGP7_LACFC.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 299782685 J._Bacteriol._192_(18),_4800_(2010) NA CP002033 NA NA Lactobacillales low_GC_Gram+ 20639335 1326 NA genomic_DNA NA CECT_5716 NA Lactobacterium_fermentum NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 712938 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Complete_Genome_Sequence_of_Lactobacillus_fermentum_CECT_5716,_a_Probiotic_Strain_Isolated_from_Human_Milk NA CP002033.1 TTACTTAGTGTAATCCACTGATTTGGTTTCCTTTGTCAAAAGTAAAGCAACGATTGAGACCAAACTCATAAATGCAAGGTAGTAACCAACTGCGTGGATCCCCCATTGTCCAACTAACCAAGATGCAATAGTTGGGGCAAAAGCAGCACCAACGATAGCGGACATATTGTAAGCAATTCCAGCACCTGAATACCTTGTACTTGTTGGGAAGAGTTCAGGCAGCATTGCACCAACTGGACCATAGATAACTCCCATTGCTAAGAAACCAACCAACAAGAAGAATAAAGTTCCAACAACGTTTTGGTGTCCTTGGAAAAAGAATGGAAATACAAACGAGAATACGAAGATGGCTGCAGTTCCTGCAAGCAATACTGTTCTGCGGCCAAATCGGTCTGACAAAATTGACGAATAAACAATCATTCCGGCAAATACAACGATTGATCCCATCAATAACATCAAGAATTCACGGCTATCAAATCCAAGTACGGCAGTTCCATAACTCAATGACCAAGTTGAAAGTAGAAAGAAGAACGTGTAGGAAATAGCCATAATAAATGTTCCTTGGAGGATTTGTTTCCAGCTCTTAGTGAATACCTGTGCCAATGGTGCTTTTTTGACGTTATCCCGTTTTTGAGCCAATCGGAATAATGGAGTTTCTTGCATCTTTCTTCTCACCCAAAGTCCGAAGACAACCAGAACAGCTGAGGCAACGAATGGTACCCGCCAACCAAATTCTACCATCTGTGACTTGGTCAATACTGTTTCCAAAATAACGTATAAACCGTTACTCAAAAAGAATCCAATTGGAGCACCCAGTTCAGTAAACGAACCAAATAGTGCCCGCTTACCCTTTGGAGCGTTCTCAGTGGCAACTAAAACGGCCCCTGACCATTCACCACCAAGACCAATGCCCTGAATAAATCTTGCTAAACATAGAAGTAAAATTGCAGTCATTCCCAAAGTTCTGTAACCGGGAAGAAAACCAATGACAACGGTAGATAGCCCCATCATCAGCAATGAGACAACTAATGCCCGCTTACGACCTAACTTATCGCCAAAGTGACCAAATAATAGCGACCCTAGAGGGCGAGCTAAAAACGCAACTCCGAATGTCAGTAAACTAAGGATCATTGCGATTGTTGGGGTTACTGATGGGAAAAAGACGTTTGGAAAATATGTTGCTGCGGCAGTACCGTATGCGTAAAAGTCAAAAAATTCAATTGCGGTTCCAATCATAGATGCCATAATGACAGTTTTAACTGGATCTCGTTCCATTTTGGCAACTTTTGCTTCTGTTAAAGAATATGTATTTGATATTTCTTCCAT > 643 LC40_0623 NA Metabolite_transporter ADJ41234.1 11 MFGVATFLGFLAPNIYILAALRFIATLGLGAELVTGFAMVAEFAPIRHRGRWAGAVSFIGNIGSPLGLLLCTLIIPSYGWRPLFFIVGAAALILWMVRRHNIPESPRWLISQGREEEAKEIIEKMEINGSYEPINHDHDHAKHTINISLKRGLIVGIIAAAATTLCQYTFTTWVPTILVKQGGDIFHSLMFSTVMTIGAPLGALAGSFLIDMFGRRKTITTGFILIAILGVAYAYQTNNTMVMIIGFLLTMCMYAMSASILSVYVPELFPTRYRFQGKGYAAGSGKLLNVLMPYFII Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_fermentum_CECT_5716 Lactobacillus_fermentum_CECT_5716 CP002033 1112632..1113525 Jimenez,E.,_Langa,S.,_Martin,V.,_Arroyo,R.,_Martin,R.,_Fernandez,L._and_Rodriguez,J.M. NA 0:894 Source_DNA_is_available_from_Juan_Miguel_Rodriguez,jmrodrig@vet.ucm.es_of_the_Universidad_Complutense_de_Madrid. NA 30-AUG-2010 Lactobacillus_fermentum_CECT_5716,_complete_genome. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_fermentum_D8IHV5_LACFC.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 299782685 J._Bacteriol._192_(18),_4800_(2010) NA CP002033 NA NA Lactobacillales low_GC_Gram+ 20639335 894 NA genomic_DNA NA CECT_5716 NA Lactobacterium_fermentum NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 712938 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Complete_Genome_Sequence_of_Lactobacillus_fermentum_CECT_5716,_a_Probiotic_Strain_Isolated_from_Human_Milk NA CP002033.1 CTAGATAATGAAGTATGGCATTAAGACGTTCAACAGCTTCCCACTACCAGCAGCGTAACCTTTTCCTTGGAAACGGTACCGGGTTGGGAATAATTCTGGTACGTAAACGGACAGGATTGAAGCGCTCATGGCGTACATGCACATCGTCAGCAGGAACCCAATGATCATAACCATCGTGTTGTTCGTTTGGTAGGCGTAGGCCACCCCTAAGATGGCAATCAAGATAAACCCGGTTGTGATGGTCTTGCGCCGACCAAACATGTCAATCAGGAAGGAACCCGCTAAGGCCCCCAGTGGTGCCCCAATCGTCATGACAGTTGAGAACATCAGGGAATGGAAGATATCACCCCCCTGCTTAACCAGGATCGTTGGGACCCAGGTGGTGAAGGTGTACTGACAAAGGGTGGTGGCGGCAGCGGCGATGATCCCGACGATCAGGCCCCGCTTCAGGCTAATGTTGATGGTGTGCTTGGCGTGATCGTGGTCATGGTTGATCGGCTCGTAGGAACCATTGATTTCCATCTTTTCAATAATTTCTTTAGCTTCTTCTTCCCGCCCCTGAGAGATTAACCAGCGTGGTGATTCCGGAATGTTGTGCCGGCGAACCATCCAGAGGATTAAGGCTGCCGCCCCAACGATGAAGAAGAGTGGCCGCCACCCGTATGACGGGATGATCAGGGTACATAAGAGTAGGCCCAGTGGTGACCCGATGTTCCCAATGAAGGAAACCGCGCCAGCCCACCGTCCCCGGTGCCGGATGGGTGCAAATTCAGCGACCATGGCAAACCCAGTTACCAACTCCGCCCCTAATCCTAGGGTGGCGATAAACCGTAAGGCGGCCAGTATGTAGATGTTTGGGGCGAGAAAGCCTAAGAAGGTTGCCACTCCAAACAT > 644 HMPREF9209_2359 identified_by_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family_protein EFB62183.1 11 MSKSHAYNLPNGWHKTFYTLWLGCFITGLGYSMTMPFISLFMAELGHYNKLQLNLYSGLAFAMTFIAQAIISPYWGNLADRKGRKLMCMRAAGVMSLTIFITGLAQSALFIICMRFLQGLFSGYINNATALMASETPHQRSGWVMSQMMTAGTAGNLVGPLIGGALSSALGYRIPFFITGSLMFLTFLGTWLLVKEDFTPVSREKMKPMGEIMQGLPNVKLIIIMFVTTMIVQSSTMSIDPIVSLYVKSLMPHSNNIALIAGIVAATPGLGTMLSASHIGHLMDHIGAEKVLRWGLLIATILFIPMTFIPNAWSLAFWRFLLGIVSAGLLPAAQTILTLNVPPEAFGRVFSYNQSFQAVGAVLGSLLGSTISGMFTYEWVFAATGITLLINYLIMQLSSHRQNA Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_gasseri_224-1 Lactobacillus_gasseri_224-1 ADFT01000031 18716..19930 Durkin,A.S.,_Madupu,R.,_Torralba,M.,_Methe,B.,_Sutton,G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1215 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACCGenome_Coverage:_35xSequencing_Technology:_454. NA 30-DEC-2009 Lactobacillus_gasseri_224-1_ctg1120334623976,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_gasseri_D1YK12_9LACO.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 282556543 Unpublished NA ADFT01000031 NA NA Lactobacillales low_GC_Gram+ NA 1215 NA genomic_DNA NA 224-1 NA Lactobacillus_gasseri_Lauer_and_Kandler_1980 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 679196 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Genome_Sequence_of_Lactobacillus_gasseri_224-1 NA ADFT01000031.1 GTGAGCAAATCACACGCTTATAATTTACCAAACGGATGGCATAAAACATTCTATACACTTTGGCTAGGCTGTTTTATTACTGGTTTAGGGTATTCAATGACGATGCCATTTATCTCCCTATTTATGGCTGAACTGGGGCATTATAATAAACTACAATTGAATTTATATTCTGGCCTAGCTTTTGCCATGACTTTTATTGCCCAGGCCATTATTTCACCTTATTGGGGAAATTTAGCTGACCGTAAAGGCAGAAAATTGATGTGCATGCGTGCTGCTGGTGTGATGAGCTTAACCATATTTATTACAGGTCTTGCTCAAAGCGCTCTCTTTATTATTTGTATGCGGTTTTTACAGGGCTTATTTTCTGGCTATATCAATAATGCCACTGCTTTAATGGCAAGCGAAACACCGCATCAACGTAGTGGCTGGGTAATGAGTCAAATGATGACTGCGGGAACGGCTGGTAACTTAGTTGGTCCTTTAATTGGTGGGGCTTTATCTAGTGCCTTAGGATACCGGATCCCTTTCTTTATTACTGGCAGCCTAATGTTTTTAACATTTTTAGGAACATGGTTATTAGTAAAAGAAGACTTTACCCCAGTTTCTCGTGAAAAGATGAAGCCGATGGGAGAAATCATGCAGGGGTTACCAAATGTTAAACTAATCATCATTATGTTTGTAACCACGATGATTGTTCAATCATCAACTATGTCAATTGATCCAATTGTTTCTTTGTATGTAAAATCTTTAATGCCACATAGCAATAATATTGCCTTGATTGCTGGTATTGTTGCAGCTACACCTGGACTTGGAACAATGCTTTCGGCTTCTCATATCGGCCATTTAATGGATCATATTGGAGCTGAGAAAGTCCTACGTTGGGGATTACTTATTGCCACAATTTTGTTCATCCCCATGACTTTTATTCCCAATGCCTGGTCACTAGCTTTTTGGCGTTTCCTTTTAGGTATTGTCAGCGCCGGACTACTTCCTGCTGCTCAAACAATCCTAACTTTGAATGTTCCACCAGAAGCATTTGGCAGAGTATTTTCTTATAATCAATCTTTTCAAGCAGTCGGAGCTGTCTTAGGGTCTTTACTCGGTTCAACAATTTCTGGTATGTTTACTTATGAATGGGTATTTGCAGCAACTGGAATTACACTATTGATTAATTATTTGATCATGCAACTTTCCTCCCACCGTCAAAATGCCTAA > 645 HMPREF0519_0827 COG:_COG0477;_Pfam:_PF00083;_InterPro:_IPR005828 MFS_family_major_facilitator_transporter EEI25034.1 11 MENTTPTYDSAVKSETLQRDPVKTVILASMIGTAIEFFDFYAYGTASATYFPNVFFPSLTPTIAMILSLLTFGVAFVARPLGSLLFGHFGDKLGRKRALVVSLLLMGVSTVIIGLLPGYKTLGISAILLLCLARFIQGIGLGGEWSGAVLVATENAPKGKRALYGAFPELGAPIGFFLSNGLFFLLESFLTPAQMNTFGWRIPFLASAVLVIVGLWVRRKMQETPLFRLAQQQNNVQKAPLVEVFRKNWRQVIQGTLTMGVAYTFFFLLSTWSLSYATTSLGFNNKEWLLLLMAAIIVFALMIVYSSVLADKFGRKKVLITGTISIITFAFVFPFFFQGQHNLLGSLFFLFVGFFKMGIVYGPIGALLPELFPTSTRYSGAGIAYNMSAIVGAAFAPTIASFLVDEWGIHAVGIYLAVMATISLIALITTKETKSVDYTK Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_hilgardii_ATCC_8290 Lactobacillus_hilgardii_ATCC_8290 ACGP01000104 18313..19635 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1323 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_ATCC._The_genomic_DNA_wasprepared_from_a_single_bacterial_isolate._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data,_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data_and_at_least_10_fold_coverage_ofIllumina/Solexa_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_to_the_Illumina/Solexa_data_withmapping_tools_such_as_Mosaic_and_Crossmatch_and_these_data_wereused_for_error_correction_for_this_version_of_the_draft_assembly.This_draft_assembly_meets_the_HMP_draft_quality_standards_(morethan_90%_of_the_genome_is_included_in_contigs,_more_than_90%_of_acore_set_of_bacterial_genes_are_found_with_>_30%_identity_and_>_30%length;_more_than_90%_of_the_bases_in_the_assembly_have_more_than_5fold_sequence_coverage,_the_contig_N50_length_is_greater_than_5kb,the_scaffold_N50_length_is_greater_than_20kb,_and_there_is_lessthan_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_11xSequencing_Technology:_454;_ABI;_Illumina/SolexaAnnotation_was_added_to_the_contigs_in_April_2009. NA 20-APR-2009 Lactobacillus_hilgardii_ATCC_8290_contig00173,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_hilgardii_C0XHW6_LACHI.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 223861487 Submitted_(08-JAN-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACGP01000104 NA NA Lactobacillales low_GC_Gram+ NA 1323 NA genomic_DNA NA ATCC_8290 NA Lactobacillus_hilgardii_Douglas_and_Cruess_1936 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 525327 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Direct_Submission NA ACGP01000104.1 ATGGAAAATACCACACCAACATATGATTCAGCCGTTAAATCCGAAACCTTGCAACGAGACCCGGTGAAAACCGTTATTTTGGCCTCAATGATTGGTACCGCTATTGAATTCTTCGATTTTTATGCTTATGGCACTGCCTCAGCTACATACTTTCCCAACGTTTTCTTCCCATCACTAACGCCGACAATTGCAATGATTTTAAGCCTTCTAACATTTGGTGTTGCCTTCGTTGCCCGGCCGCTGGGTTCCCTGCTTTTCGGCCATTTTGGGGATAAATTAGGTCGTAAACGGGCATTGGTTGTTTCATTACTGCTCATGGGTGTTTCAACCGTCATCATCGGCCTATTACCCGGTTACAAAACACTCGGAATTTCTGCCATTCTATTACTCTGTCTAGCAAGATTTATCCAAGGAATCGGCCTTGGCGGCGAATGGTCCGGTGCCGTTTTGGTTGCTACAGAAAATGCTCCAAAAGGAAAACGAGCGCTTTATGGTGCCTTTCCTGAATTAGGTGCACCAATCGGCTTCTTCCTCAGTAATGGACTCTTCTTCCTACTTGAATCATTCCTGACACCGGCTCAAATGAACACCTTTGGCTGGCGGATCCCGTTCCTGGCCTCAGCTGTTCTTGTTATTGTCGGTCTCTGGGTACGTCGGAAAATGCAGGAAACCCCACTATTCCGTCTGGCACAACAGCAAAATAACGTTCAAAAGGCCCCACTAGTTGAGGTTTTCCGCAAAAACTGGCGCCAAGTTATCCAGGGAACCCTGACAATGGGTGTTGCTTATACATTTTTCTTCCTGCTTTCAACTTGGTCATTAAGTTATGCCACAACCTCGCTTGGATTTAACAATAAAGAATGGCTGTTGCTTCTCATGGCTGCTATTATCGTTTTTGCACTTATGATCGTTTATTCATCAGTACTGGCCGATAAATTTGGCCGTAAGAAGGTCCTCATTACAGGAACGATTTCAATTATTACCTTTGCTTTTGTCTTCCCGTTCTTCTTCCAAGGACAACATAACTTGCTTGGGAGCCTGTTCTTCCTCTTCGTTGGTTTCTTCAAGATGGGGATTGTGTATGGGCCAATCGGTGCGCTGCTTCCCGAACTTTTCCCAACCAGTACCCGCTATTCCGGAGCCGGAATTGCTTATAATATGTCCGCAATTGTCGGTGCCGCTTTTGCACCAACCATTGCGTCATTCCTAGTTGACGAATGGGGCATTCATGCCGTTGGAATCTACTTGGCAGTGATGGCAACCATTTCACTGATTGCACTGATCACCACAAAAGAAACAAAATCGGTTGATTACACTAAATAA > 646 HMPREF0519_2627 Pfam:_PF07690;_InterPro:_IPR011701 conserved_hypothetical_protein EEI23244.1 11 MPMERQISLQGRIDRTKESPLFYEIFALVAGGMFLDAVDVYLASAVATTVLKDNWSTLQLNSYFLSSGFLGLFLGSIIAGFIGDLKGRRVAYQINLLMFGGFTFLGAFAPNMGFLIFCRLMSSIGLGSEIVTGYSMINEFAPIHSRGK Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_hilgardii_ATCC_8290 Lactobacillus_hilgardii_ATCC_8290 ACGP01000222 12537..12983 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:447 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_ATCC._The_genomic_DNA_wasprepared_from_a_single_bacterial_isolate._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data,_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data_and_at_least_10_fold_coverage_ofIllumina/Solexa_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_to_the_Illumina/Solexa_data_withmapping_tools_such_as_Mosaic_and_Crossmatch_and_these_data_wereused_for_error_correction_for_this_version_of_the_draft_assembly.This_draft_assembly_meets_the_HMP_draft_quality_standards_(morethan_90%_of_the_genome_is_included_in_contigs,_more_than_90%_of_acore_set_of_bacterial_genes_are_found_with_>_30%_identity_and_>_30%length;_more_than_90%_of_the_bases_in_the_assembly_have_more_than_5fold_sequence_coverage,_the_contig_N50_length_is_greater_than_5kb,the_scaffold_N50_length_is_greater_than_20kb,_and_there_is_lessthan_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_11xSequencing_Technology:_454;_ABI;_Illumina/SolexaAnnotation_was_added_to_the_contigs_in_April_2009. NA 20-APR-2009 Lactobacillus_hilgardii_ATCC_8290_contig00300,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_hilgardii_C0XN16_LACHI.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 223861369 Submitted_(08-JAN-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACGP01000222 NA NA Lactobacillales low_GC_Gram+ NA 447 NA genomic_DNA NA ATCC_8290 NA Lactobacillus_hilgardii_Douglas_and_Cruess_1936 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 525327 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Direct_Submission NA ACGP01000222.1 ATGCCTATGGAAAGACAAATTAGTTTGCAGGGCCGAATTGACCGAACCAAAGAATCACCTTTATTTTATGAGATATTTGCCTTGGTAGCCGGTGGTATGTTTTTGGATGCCGTTGATGTTTACTTGGCAAGCGCGGTGGCAACAACTGTTTTAAAAGATAATTGGTCCACATTACAATTGAATTCCTATTTCTTATCAAGTGGCTTTCTCGGATTATTTTTAGGATCAATCATTGCCGGTTTCATTGGTGATTTAAAGGGTCGACGGGTCGCCTATCAAATTAATCTGCTGATGTTTGGCGGTTTTACTTTTCTTGGGGCATTTGCACCTAATATGGGATTTTTGATTTTCTGTCGTTTGATGTCGAGTATCGGCTTAGGATCCGAAATCGTGACCGGGTATTCCATGATTAATGAATTTGCGCCAATACATAGTCGCGGTAAATAG > 647 HMPREF9215_0632 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family_protein EFO72012.1 11 MQENYNKKNYQYAPFSKVHLRVYIAICLGQIACGYSLGISGLAIEAANKYLNITSIWNGLIGSGTLIGLGGSIFMGRLADKIGRHHMLMINMYVLSFLSIIQLFTSNLLFTFIIRIGIGLMIAIDYTVGNALLIEWMPIQEGAKKQSSILLYWTLGFVISYPIGLIIHGFGPLTWRIILASVAFFSLIAALYRTSFNLPGSPSWLASRGNFVDANKIIQYQLGKKWGLPKHLERYKPIKSLSWTELFNKHYLRRTIVGGGFYACQSFAYFGISIFLPLILKSMNLQNNYLPGIIYNIGIFVGVSIGVVIFNHIGRKIFLTSTFLISAISIGLLALSLHANAWIKVVLFLIFAMSLSSGLVFDYTYTTELFDVKIRATGVGTCIAISRIGAFLGTFLLPIINQNYGTSTAMFICFIVLVFGALICGILAIETTALSK Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_iners_SPIN_2503V10-D Lactobacillus_iners_SPIN_2503V10-D AEHR01000021 28603..29913 Durkin,A.S.,_Madupu,R.,_Torralba,M.,_Gillis,M.,_Methe,B.,_Sutton,G._and_Nelson,K.E. NA 0:1311 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_52xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 05-OCT-2010 Lactobacillus_iners_SPIN_2503V10-D_contig00029,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_iners_E1NXH8_9LACO.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 308169884 Submitted_(29-SEP-2010)_The_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA AEHR01000021 NA NA Lactobacillales low_GC_Gram+ NA 1311 NA genomic_DNA NA SPIN_2503V10-D NA Lactobacillus_sp._EF_(Enevold_Falsen)_group_47 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 879296 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Direct_Submission NA AEHR01000021.1 ATGCAGGAAAATTATAATAAAAAAAATTATCAATACGCTCCATTTTCCAAAGTTCACCTTAGAGTTTATATTGCCATTTGTTTAGGACAAATTGCATGTGGATATAGTTTAGGAATTAGTGGACTTGCTATAGAAGCTGCCAACAAATATCTAAATATTACTAGCATATGGAATGGCTTGATAGGATCAGGTACTCTTATTGGTCTAGGTGGCAGTATATTTATGGGACGTTTAGCAGATAAAATTGGTAGGCACCACATGTTAATGATTAATATGTATGTACTATCCTTTTTGTCGATTATTCAATTGTTCACCAGTAATTTGCTATTTACTTTTATAATTCGAATTGGTATCGGATTAATGATTGCTATTGATTATACAGTCGGTAATGCATTATTAATCGAATGGATGCCCATACAAGAAGGTGCTAAAAAACAAAGCAGTATTCTTTTATATTGGACTCTTGGTTTTGTCATTTCCTATCCAATAGGATTAATAATCCATGGTTTTGGTCCCTTAACTTGGAGAATTATTTTAGCATCTGTAGCTTTTTTCAGTTTAATCGCTGCACTATATCGTACATCATTTAATCTGCCAGGGTCTCCTAGTTGGCTAGCAAGTAGAGGAAATTTTGTTGATGCTAATAAAATTATTCAATACCAATTAGGTAAAAAGTGGGGACTGCCAAAACATCTAGAAAGATATAAACCTATTAAAAGCTTGTCATGGACTGAATTATTTAATAAGCACTACCTTAGAAGAACTATCGTAGGGGGAGGGTTTTATGCTTGCCAATCTTTTGCCTACTTCGGCATAAGTATATTTTTACCCTTAATTCTTAAAAGCATGAACCTACAAAATAATTATTTACCAGGTATCATTTATAATATAGGCATTTTTGTAGGTGTAAGTATTGGCGTAGTTATCTTTAATCATATCGGTAGAAAAATATTTTTAACATCAACTTTTTTGATATCTGCTATCAGTATTGGATTATTAGCTCTATCATTACATGCTAATGCATGGATTAAAGTAGTTCTGTTCTTAATTTTTGCTATGTCTTTATCTTCAGGCCTAGTTTTTGATTATACTTATACAACTGAATTATTTGATGTTAAAATCAGAGCAACTGGCGTTGGTACATGTATAGCAATTAGTAGAATTGGTGCATTTTTAGGAACTTTTTTATTACCTATCATAAATCAAAATTATGGAACAAGTACCGCTATGTTTATTTGTTTTATAGTCTTAGTATTTGGAGCTCTTATTTGTGGTATATTAGCTATCGAAACTACAGCACTCAGTAAATAG > 648 HMPREF0525_00766 NA major_facilitator_transporter EEU21832.1 11 MGEQNQQSKTEIKRKQKKNIFYKRKSYKKAPFSDVHAQLYWALVLGQIACAYALGIAGSAFNHAKAFLSINDTWLGLLGAGSLIGLAGSFIMGRISDRFGRKHLLMANMYIYSLLSILQFFTSNLFLLFLLRVGIGLMIAIDYTVGNSILVEWMPTKDGAKKQSNLLLYWSYGFGLSFLASQFISDWRFMLCSSAVLGLIAAIYRSIVQIPHSPSWLASQGEHRQAQKVIQKNLGKKWGLPKSLLRVKKKTDASPLELFGKKYWRATLAGTAFYATQAFAFFGISIFLPILLKNMHMNNAFLSGLLYNLAIIVGTAIGIWLFNKMSRRSFLIVTFSISIICLFILALFPQLPSILTLIIFTIFSIVLSISLLLDFTYTTELFDLRIRATGVGFVITMSRVGAAAGTFLLPIIVNLAGAYITLCVCGVVLLIGTIICIFVAPETNPQFIKKENK Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_jensenii_27-2-CHN Lactobacillus_jensenii_27-2-CHN GG698814 852016..853377 Ward,D.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Liu,Y.,_Xu,Q.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1362 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Source_DNA_provided_by_Qiang_Xu,_and_Yang_Liu_(Osel_Inc.,_4008Burton_Drive,_Santa_Clara,_CA_95066).Bacteria_provided_by_Qiang_Xu,_and_Yang_Liu_(Osel_Inc.,_4008_BurtonDrive,_Santa_Clara,_CA_95066).Genome_Coverage:_28.90xSequencing_Technology:_454Gene_Calling_Method:_GeneMark;_Glimmer;_Metagene;_PFAM;_Blast_tonon-redundant_protein_database;_Manual_curation. NA 26-AUG-2009 Lactobacillus_jensenii_27-2-CHN_genomic_scaffold_supercont1.1,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_jensenii_C7XZH8_9LACO.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 256615878 Unpublished NA GG698814 NA NA Lactobacillales low_GC_Gram+ NA 1362 NA genomic_DNA NA 27-2-CHN NA Lactobacillus_jensenii_Gasser_et_al._1970 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 575606 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus The_Genome_Sequence_of_Lactobacillus_jensenii_strain_27-2-CHN NA GG698814.1 ATGGGTGAACAAAATCAACAAAGTAAAACAGAAATAAAACGTAAACAAAAAAAGAACATATTTTATAAACGTAAAAGTTACAAAAAAGCCCCTTTTTCTGATGTACATGCTCAATTATATTGGGCATTAGTTTTAGGGCAAATTGCATGTGCTTATGCACTAGGGATAGCTGGTAGTGCTTTTAACCATGCTAAAGCTTTTCTAAGTATTAATGATACTTGGCTAGGTCTATTAGGGGCAGGGTCACTAATCGGATTAGCTGGTAGCTTCATCATGGGCCGTATTTCTGATCGATTCGGGCGTAAGCATTTGCTGATGGCAAATATGTATATTTACTCACTTTTATCAATATTACAATTCTTTACCAGTAACTTATTTTTATTATTTTTACTCAGAGTAGGAATTGGATTGATGATTGCAATTGACTACACAGTTGGTAATTCTATTTTAGTCGAATGGATGCCAACCAAAGATGGAGCTAAAAAACAAAGTAATCTTTTATTATATTGGTCATATGGATTTGGATTATCCTTTCTAGCTAGCCAATTTATTAGCGATTGGCGCTTTATGCTTTGTTCGTCAGCAGTTTTAGGCCTAATAGCTGCTATTTATCGGAGCATTGTTCAAATTCCCCACTCTCCATCTTGGCTTGCTAGTCAAGGTGAGCATCGACAAGCACAAAAAGTTATTCAGAAAAATCTTGGTAAAAAATGGGGACTTCCAAAAAGTTTACTAAGAGTAAAAAAGAAAACTGATGCTTCTCCACTTGAACTTTTTGGTAAAAAATATTGGCGAGCAACATTAGCTGGAACGGCTTTTTATGCTACCCAAGCTTTTGCTTTCTTTGGTATTAGTATATTCTTACCAATCTTATTGAAGAATATGCACATGAATAATGCCTTCTTATCAGGTTTACTTTACAATTTAGCCATTATTGTTGGTACAGCAATTGGGATTTGGCTTTTCAACAAGATGAGTAGACGAAGTTTCTTAATTGTTACATTCTCTATTTCAATTATTTGTTTATTTATTTTAGCTTTGTTCCCTCAATTACCTTCAATATTAACCTTGATTATTTTTACAATTTTTTCAATTGTTTTATCAATTTCATTGTTACTAGACTTTACTTATACTACTGAATTATTTGATTTAAGAATTAGAGCAACTGGTGTTGGTTTCGTTATCACGATGAGCCGTGTTGGTGCTGCTGCAGGTACATTTTTATTACCTATAATTGTTAATTTAGCTGGTGCCTATATAACATTATGTGTTTGTGGCGTTGTTTTATTAATTGGTACAATAATTTGTATCTTTGTAGCTCCTGAAACCAATCCACAATTTATAAAAAAAGAAAATAAATAA > 649 HMPREF0886_0743 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 D-xylose_proton-symporter EFA94669.1 11 MTQTKNYKDAPFSKVHSQIYWAMNIGQIACAYALNVAGIAFGNGQHQLGINNFLLGLLGAASLIGLIGSFFMGQLADRFGRKHILMSNMYIFTILSLLQYFTTNVWLLLVLRLLIGLMIAVDYTVGNALMVEWLPTKDAAAKQSHLLFYWTLGLLIAYVTGHYVSDWRLLLASSAVFGLIAALNRSFIRLPASPSWLASHNQNESATELIQERLGKEWGLPKHLVELEEDPSINWMTLFSKDYWRQTLAGTAFYATQSFAFFGINIFLPILLKSMDVTDTYLAGLFYNIATVAGPAIGIYFFNIYRRRSFLIVTFSISSLCLFILAFGKSINSIIEITIFTLLAVILTASVLLDFPYTSELFDIKLRGTGVGFVIAMSRIGAALGTFLLPVVVSAYGSYVTMAICGVVLLLGTVICYFVAPETNPRYVNKD Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_jensenii_208-1 Lactobacillus_jensenii_208-1 ADEX01000125 9916..11211 Shrivastava,S.,_Madupu,R.,_Durkin,A.S.,_Torralba,M.,_Methe,B.,_Sutton,G.G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1296 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACCGenome_Coverage:_12xSequencing_Technology:_454. NA 15-DEC-2009 Lactobacillus_jensenii_208-1_contig00061,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_jensenii_D1WEK0_9LACO.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 281302433 Submitted_(11-DEC-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ADEX01000125 NA NA Lactobacillales low_GC_Gram+ NA 1296 NA genomic_DNA NA 208-1 NA Lactobacillus_jensenii_Gasser_et_al._1970 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 596326 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Direct_Submission NA ADEX01000125.1 TTAATCTTTATTAACATATCTTGGATTAGTTTCAGGAGCAACAAAATAACAAATTACTGTACCTAGTAGCAAGACCACGCCACAAATAGCCATTGTTACATATGAACCATATGCACTAACAACAACAGGAAGTAAGAATGTTCCTAATGCTGCGCCAATTCTACTCATAGCGATGACAAAACCAACACCAGTACCACGAAGTTTAATATCAAATAATTCAGATGTATAAGGGAAATCTAACAATACAGATGCCGTTAAAATAACTGCTAAAAGTGTAAAGATTGTTATTTCGATAATTGAATTAATTGATTTTCCAAAAGCTAAAATGAATAAGCAAAGGCTGGAAATTGAAAAAGTAACAATTAAAAAGCTTCTTCTACGATATATATTAAAGAAATAAATACCAATTGCAGGTCCCGCAACAGTAGCAATATTGTAAAATAAACCAGCTAGGTATGTATCTGTTACATCCATACTCTTTAATAGAATTGGTAAGAAAATATTAATTCCGAAGAATGCAAAAGATTGAGTAGCATAAAAGGCAGTTCCAGCTAAAGTTTGACGCCAGTAATCTTTGGAAAAAAGAGTCATCCAGTTAATACTTGGATCTTCTTCAAGCTCAACTAAATGCTTGGGTAAACCCCATTCTTTTCCTAATCTTTCCTGAATTAATTCAGTTGCTGATTCATTTTGATTATGACTTGCTAGCCATGAAGGGGATGCTGGGAGGCGAATGAAGCTACGGTTAAGTGCAGCAATTAAACCAAAGACTGCACTTGAAGCTAGGAGTAAGCGCCAGTCACTAACATAATGTCCTGTCACATAAGCAATTAAAAGCCCCAATGTCCAGTAAAATAATAAGTGACTCTGCTTTGCAGCTGCATCTTTAGTAGGTAGCCATTCAACCATTAAGGCATTTCCGACTGTGTAATCAACTGCAATCATTAATCCAATTAACAATCTAAGAACTAATAAAAGCCATACGTTAGTTGTAAAGTATTGCAATAAAGATAAAATGGTAAAAATATACATATTACTCATTAGTATATGTTTTCTACCAAATCTATCAGCTAATTGCCCCATGAAGAAGCTGCCGATTAATCCGATTAAACTTGCAGCTCCAAGTAAACCTAAGAGAAAGTTATTGATGCCTAGCTGATGTTGCCCGTTTCCAAAAGCAATTCCGGCCACATTAAGAGCGTAAGCACAGGCAATCTGTCCAATGTTCATTGCCCAATAAATTTGTGAATGCACCTTAGAGAAAGGTGCATCTTTGTAATTCTTAGTTTGAGTCAT > 650 HMPREF0886_0520 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 D-xylose_proton-symporter EFA93648.1 11 MTQTKNYKDAPFSKVHSQIYWAMNIGQIACAYALNVAGIAFGNAQQELGINNFILGLLGAASLIGLIGSFFMGQLADKFGRKHMLMSNMYIFTILSLLQYFTTNVWILLVLRLLIGLMIAVDYTVGNSLMVEWLPTKDAAAKQSHLLFYWTLGLLIAYVTGHYISNWKLLLASSAVFGLIAALNRSFIRLPASPSWLASHNQNESATELIHERLGEEWGLPKHLVELEEDPSINWMTLFSKNYWRQTLAGTAFYTTQSFAFFGINIFLPILLKSMDVTDTYLAGLFYNIATVAGPAIGIYFFNKYRRRSFLIVTFSISSLCLFILAFGKSINSIVEITIFTLLAVILTASVLLDFPYTSELFDIKLRGTGVGFVIAMSRIGAALGTFLLPVIVSAYGSYVTMAICGVVLLLGTVICYFVAPETNPRYINKD Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_jensenii_208-1 Lactobacillus_jensenii_208-1 ADEX01000198 1077..2372 Shrivastava,S.,_Madupu,R.,_Durkin,A.S.,_Torralba,M.,_Methe,B.,_Sutton,G.G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1296 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACCGenome_Coverage:_12xSequencing_Technology:_454. NA 15-DEC-2009 Lactobacillus_jensenii_208-1_contig00046,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_jensenii_D1WHG3_9LACO.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 281301350 Submitted_(11-DEC-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ADEX01000198 NA NA Lactobacillales low_GC_Gram+ NA 1296 NA genomic_DNA NA 208-1 NA Lactobacillus_jensenii_Gasser_et_al._1970 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 596326 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Direct_Submission NA ADEX01000198.1 TTAATCTTTATTAATATATCTAGGATTAGTTTCAGGAGCAACAAAATAACAAATTACTGTACCTAATAATAAGACCACTCCACAAATAGCCATTGTTACGTATGAACCATATGCACTAACAATAACAGGAAGTAAGAACGTTCCTAGTGCTGCGCCAATTCTACTCATAGCAATGACAAAACCAACTCCAGTACCACGAAGTTTAATATCAAATAATTCAGATGTATAAGGGAAATCTAACAATACAGATGCGGTTAAAATAACTGCTAAAAGTGTAAAGATTGTTATTTCGACAATTGAATTAATTGATTTGCCAAAAGCTAGTATAAATAGACATAGACTAGAGATTGAGAATGTAACAATTAAAAAGCTTCTTCTGCGGTATTTATTAAAGAAGTAGATACCAATAGCTGGCCCAGCAACAGTTGCAATATTATAAAATAAACCAGCTAGGTATGTATCTGTTACATCCATACTCTTTAACAATATTGGTAAGAAAATATTAATACCAAAGAAAGCAAAAGATTGCGTTGTGTAAAAAGCAGTACCAGCTAAAGTTTGGCGCCAGTAATTTTTTGAAAAAAGAGTCATCCAGTTAATACTTGGATCTTCTTCTAATTCTACTAAGTGTTTTGGTAGTCCCCATTCTTCTCCAAGGCGTTCATGAATTAATTCAGTTGCAGATTCATTTTGATTATGGCTAGCAAGCCAAGATGGTGAAGCTGGTAAACGGATAAAACTACGATTAAGTGCAGCAATCAATCCAAATACAGCGCTTGAAGCTAGAAGCAACTTCCAATTACTTATGTAATGTCCAGTAACGTAAGCAATTAATAAGCCTAATGTCCAATAAAAAAGTAAGTGACTTTGTTTTGCTGCAGCATCTTTAGTAGGTAGCCACTCAACCATTAATGAATTACCAACAGTATAGTCAACAGCAATCATTAAACCAATCAATAGACGTAAAACTAATAAAATCCAAACATTAGTTGTAAAATATTGTAGTAAAGATAAAATTGTAAAGATATACATGTTACTCATTAACATGTGTTTTCTACCAAATTTATCTGCAAGTTGTCCCATAAAGAAACTTCCAATTAGACCAATTAAACTGGCTGCTCCTAAAAGACCTAAGATAAAATTATTAATTCCTAATTCTTGTTGGGCATTACCAAAAGCAATTCCAGCAACATTTAAGGCATAGGCACATGCGATTTGCCCGATGTTCATAGCCCAATAAATTTGAGAATGCACTTTTGAAAATGGTGCATCTTTATAATTTTTTGTTTGAGTCAT > 651 HMPREF9265_0279 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 putative_metabolite_transport_protein_CsbC EFQ53210.1 11 MKHKLSAGWIYFFAALGGLLFGYDTGSISGAILFIEKQLSLNSWQQGSVVSAVLLGAILGAVTIGPFSDRFGRRKLLMVTSIIFFVGALGSGVAPEFWTLIISRVILGLGVGSASALIPTYLAELAPVAKRGMMSGLFQLMVMTGLLFAYLFNYWLQGIYTGWRWMLGLAAVPAAVLFVGAIILPESPRYLVRNDKENVAREVLMAMNQNDANVVNDDIAKIQKQAAIKSGGWSELFGLMVRPALIAAVGLAIFQQVMGCNTVLYYAPTIFTDAGFGVHFALLSHIWIGIFNVIVTVIGIWLMNRVSRRKMLIVGGWLMAITLFIMCWGLMHSSDSKFAADVAVISMVIYIASFSGTWGPIMWTMIGEMFPLNIRGLGNSFSAGVNWTANMIVSLTFPPLLSFFGKGTLFIGYGVFCLLAIWFVHAKVFETQGKSLESIEQWLRDQAAKKKAAKND Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_oris_PB013-T2-3 Lactobacillus_oris_PB013-T2-3 AEKL01000047 19944..21314 Durkin,A.S.,_Madupu,R.,_Torralba,M.,_Gillis,M.,_Methe,B.,_Sutton,G._and_Nelson,K.E. NA 0:1371 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_60xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 04-NOV-2010 Lactobacillus_oris_PB013-T2-3_contig00020,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_oris_E3C7U7_9LACO.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 311094902 Submitted_(28-OCT-2010)_The_J._Craig_Venter_Institute,_9704_Medical_Center_Dr.,_Rockville,_MD_20850,_USA NA AEKL01000047 NA NA Lactobacillales low_GC_Gram+ NA 1371 NA genomic_DNA NA PB013-T2-3 NA Lactobacillus_oris_Farrow_and_Collins_1988 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 908339 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Direct_Submission NA AEKL01000047.1 ATGAAACATAAACTATCTGCAGGGTGGATTTATTTCTTTGCCGCTTTGGGTGGCTTACTTTTCGGTTACGATACGGGATCCATTTCTGGTGCCATCCTATTTATTGAAAAGCAATTATCCTTGAATTCTTGGCAACAAGGTTCCGTCGTTTCCGCTGTATTGCTGGGTGCTATTCTGGGTGCCGTTACCATTGGACCTTTCTCAGACCGCTTTGGTCGGCGGAAGCTCCTGATGGTTACTTCAATTATCTTCTTCGTTGGGGCCTTAGGTTCCGGGGTTGCTCCTGAATTCTGGACACTGATTATTTCCCGGGTAATTCTGGGGCTCGGTGTTGGTTCTGCTTCAGCATTGATTCCAACCTACCTGGCCGAATTAGCACCAGTTGCTAAACGGGGAATGATGTCCGGACTCTTCCAGCTAATGGTTATGACCGGGTTGCTGTTCGCCTACCTGTTCAACTACTGGTTGCAGGGCATTTACACCGGTTGGCGGTGGATGCTTGGCTTGGCTGCCGTACCAGCTGCCGTTCTCTTTGTCGGGGCAATTATCCTGCCTGAATCGCCACGTTACCTGGTACGGAACGACAAGGAAAACGTTGCCCGTGAAGTTCTGATGGCAATGAACCAAAACGATGCCAACGTGGTTAATGATGATATTGCCAAGATTCAAAAGCAGGCCGCCATTAAATCTGGTGGTTGGAGCGAACTGTTTGGTTTGATGGTTCGGCCAGCCCTGATTGCCGCTGTCGGCCTGGCAATTTTCCAACAGGTAATGGGTTGTAACACGGTGCTCTACTACGCCCCAACCATCTTTACTGATGCAGGCTTCGGTGTGCACTTCGCACTGCTCTCCCACATTTGGATTGGGATTTTCAACGTCATCGTTACTGTGATCGGGATCTGGCTGATGAACCGGGTTAGCCGGCGGAAGATGTTAATCGTCGGTGGTTGGCTGATGGCTATTACCCTATTCATCATGTGCTGGGGACTGATGCACTCCAGCGATTCCAAGTTTGCCGCTGACGTTGCCGTAATTTCCATGGTAATCTACATCGCTTCGTTCTCTGGTACCTGGGGCCCAATCATGTGGACAATGATTGGTGAAATGTTCCCACTGAACATCCGTGGTTTAGGAAACTCCTTCTCCGCTGGTGTCAACTGGACCGCAAACATGATCGTTTCCCTGACCTTCCCACCTCTTCTGAGCTTCTTTGGTAAGGGTACTCTGTTCATCGGTTACGGTGTCTTCTGTCTGCTCGCCATCTGGTTTGTCCACGCCAAGGTCTTCGAAACCCAAGGCAAGTCCCTGGAAAGTATCGAACAATGGCTGCGTGACCAGGCTGCCAAGAAGAAAGCAGCTAAGAACGATTAA > 652 Lreu_0161 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_001270770.1 11 MDSTVTNTPQTNSKLNVKRDPVKTVILASMMGTAIEFFDFYAYGTASAAYFPKIFFPQMTPLLATLLSLLTFGVAFVARPIGSFLFGHYGDRLGRKKTLVVSLLVMGVATVAIGFIPSYQVIGVWGALLLCLCRFVQGIGLGGEWSGAVLVATENAPANKRALYGAFPEVGAPIGFFLCNGLFFALERVLTPTQMMTFGWRIPFWASAVLVVIGLYVRRRLQETPLFKLAQERDNTAASPLREVFKSNWREILKGTFIMGATYALFFTLTTWSLSYATTALGFTSSEFLLLLMGAIVEFAALIMLTSVLADRVGRKKVLLTASVALVGYSLVFPYFLTGQHNLVGVLLFLGLGFLVMGTLYGPVGAVLPELFPTRVRYSGAGITYNLAAVVGAAVAPTVTTWLIANYGLHSAGYYMLVLSVLAVISWLLTKETKDVDYTK Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_reuteri_DSM_20016 Lactobacillus_reuteri_DSM_20016 NC_009513 195009..196331 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Goltsman,E.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_Walter,J.,_Heng,N.C.K.,_Tannock,G.W._and_Richardson,P. NA 0:1323 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000705.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000135Source_DNA_available_from_Gerald_Tannock(gerald.tannock@stonebow.otago.ac.nz)Bacteria_available_from_DSMZ:_DSM_20016Contacts:_Gerald_Tannock_(gerald.tannock@stonebow.otago.ac.nz)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-PGFFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Lactobacillus_reuteri_DSM_20016_chromosome,_complete_genome. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_reuteri_A5VHV9_LACRD.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 148543243 Unpublished NA NC_009513 NA NA Lactobacillales low_GC_Gram+ NA 1323 NA genomic_DNA NA DSM_20016 NA Lactobacillus_reuteri_Kandler_et_al._1982 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 557436 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Complete_sequence_of_chromosome_of_Lactobacillus_reuteri_DSM_20016 NA NC_009513.1 ATGGATAGTACAGTAACTAACACCCCGCAGACAAACAGCAAGCTTAATGTAAAACGTGATCCTGTCAAGACAGTAATTTTGGCTTCGATGATGGGAACGGCAATTGAGTTTTTCGATTTTTACGCTTACGGGACTGCATCTGCTGCTTATTTTCCCAAAATTTTCTTTCCGCAAATGACCCCTTTACTTGCAACACTTTTAAGTTTGTTAACTTTTGGAGTAGCCTTTGTAGCACGCCCGATAGGTTCCTTCCTATTTGGACATTATGGTGATCGTTTAGGACGCAAGAAAACACTTGTGGTCTCACTTTTAGTAATGGGAGTGGCGACGGTAGCCATTGGTTTCATTCCTAGCTATCAGGTTATCGGCGTTTGGGGAGCATTGTTACTTTGCCTTTGTCGGTTTGTCCAAGGAATCGGGCTTGGTGGTGAATGGTCCGGGGCTGTATTAGTAGCTACTGAAAATGCTCCGGCTAATAAGCGGGCATTATATGGTGCATTTCCGGAAGTGGGAGCACCAATTGGATTCTTCCTATGCAATGGCTTATTCTTTGCTTTAGAACGGGTACTAACACCAACGCAAATGATGACGTTTGGTTGGCGAATTCCTTTTTGGGCCTCAGCTGTTTTAGTCGTTATAGGGTTATATGTCCGACGTCGTTTACAGGAAACACCTTTGTTTAAATTAGCTCAAGAACGTGATAACACAGCTGCTTCGCCTCTTCGTGAAGTATTCAAATCTAATTGGCGTGAAATCTTAAAAGGAACTTTCATCATGGGAGCAACCTATGCACTATTCTTTACATTAACAACTTGGTCATTATCATATGCTACAACAGCTTTAGGTTTTACCTCTTCGGAATTTTTATTATTATTAATGGGTGCAATTGTTGAATTCGCTGCTTTGATCATGTTAACTTCTGTATTAGCAGATCGTGTTGGTCGGAAAAAAGTTCTATTAACTGCGTCAGTAGCACTAGTTGGCTATTCCTTGGTATTCCCATATTTCCTTACAGGACAACATAACTTAGTTGGCGTTTTACTCTTCTTAGGACTAGGATTCTTAGTAATGGGCACTCTTTATGGTCCAGTCGGTGCTGTTTTGCCTGAACTGTTCCCAACCAGAGTTCGCTATTCTGGTGCAGGAATTACTTATAACTTAGCTGCAGTGGTTGGGGCAGCCGTTGCTCCAACTGTAACAACGTGGTTAATTGCTAATTATGGATTACATTCGGCTGGATATTATATGCTAGTTTTATCAGTACTAGCAGTTATTTCTTGGTTATTGACAAAAGAAACAAAGGATGTGGATTATACTAAATAA > 653 HMPREF0535_0501 COG:_COG0477 MFS_family_major_facilitator_transporter EEI09722.1 11 MDSTVTNTPQTNSKLNVKRDPVKTVILASMMGTAIEFFDFYAYGTASAAYFPKIFFPQMTPLLATLLSLLTFGVAFVARPIGSFLFGHYGDRLGRKKTLVVSLLVMGVATVAIGFIPSYQVIGVWGALLLCLCRFVQGIGLGGEWSGAVLVATENAPANKRALYGAFPEVGAPIGFFLCNGLFFALERVLTPTQMMTFGWRIPFWASAVLVVIGLYVRRRLQETPLFKLAQERDNTAASPLREVFKSNWREILKGTFIMGATYALFFTLTTWSLSYATTALGFTSSEFLLLLMGAIVEFAALIMLTSVLADRVGRKKVLLTASVALVGYSLVFPYFLTGQHNLVGVLLFLGLGFLVMGTLYGPVGAVLPELFPTRVRYSGAGITYNLAAVVGAAVAPTVTTWLIANYGLHSAGYYMLVLSVLAVISWLLTKETKDVDYTK Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_reuteri_MM2-3 Lactobacillus_reuteri_MM2-3 ACLB01000021 7424..8746 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1323 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_Dr._James_Versalovic(contact_information:_Department_of_Pathology,_Texas_ChildrensHospital,_6621_Fannin_Street_MC-12261,_Houston_TX_77030;_emailjamesv@bcm.edu)._The_genomic_DNA_was_prepared_from_a_singlebacterial_isolate._The_sequence_generated_included_at_least_10fold_coverage_of_Roche/454_Lifesciences_FLX_fragment_data_and_atleast_8_fold_clone_coverage_of_Roche/454_Lifesciences_paired-enddata._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_with_mapping_tools_such_as_Mosaic_andCrossmatch_and_these_data_were_used_for_error_correction_for_thisversion_of_the_draft_assembly._This_draft_assembly_meets_the_HMPdraft_quality_standards_(more_than_90%_of_the_genome_is_included_incontigs,_more_than_90%_of_a_core_set_of_bacterial_genes_are_foundwith_>_30%_identity_and_>_30%_length;_more_than_90%_of_the_bases_inthe_assembly_have_more_than_5_fold_sequence_coverage,_the_contigN50_length_is_greater_than_5kb,_the_scaffold_N50_length_is_greaterthan_20kb,_and_there_is_less_than_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_37xSequencing_Technology:_454;_ABI. NA 20-APR-2009 Lactobacillus_reuteri_MM2-3_contig00021,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_reuteri_C0YXI6_LACRE.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 227071409 Submitted_(14-APR-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACLB01000021 NA NA Lactobacillales low_GC_Gram+ NA 1323 NA genomic_DNA NA MM2-3 NA Lactobacillus_reuteri_Kandler_et_al._1982 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 585517 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Direct_Submission NA ACLB01000021.1 ATGGATAGTACAGTAACTAACACCCCGCAGACAAACAGCAAGCTTAATGTAAAACGTGATCCTGTCAAGACAGTAATTTTGGCTTCGATGATGGGAACGGCAATTGAGTTTTTCGATTTTTACGCTTACGGGACTGCATCTGCTGCTTATTTTCCCAAAATTTTCTTTCCGCAAATGACCCCTTTACTTGCAACACTTTTAAGTTTGTTAACTTTTGGAGTAGCCTTTGTAGCACGCCCGATAGGTTCCTTCCTATTTGGACATTATGGTGATCGTTTAGGACGCAAGAAAACACTTGTGGTCTCACTTTTAGTAATGGGAGTGGCGACGGTAGCCATTGGTTTCATTCCTAGCTATCAGGTTATCGGCGTTTGGGGAGCATTGTTACTTTGCCTTTGTCGGTTTGTCCAAGGAATCGGGCTTGGTGGTGAATGGTCCGGGGCTGTATTAGTAGCTACTGAAAATGCTCCGGCTAATAAGCGGGCATTATATGGTGCATTTCCGGAAGTGGGAGCACCAATTGGATTCTTCCTATGCAATGGCTTATTCTTTGCTTTAGAACGGGTACTAACACCAACGCAAATGATGACGTTTGGTTGGCGAATTCCTTTTTGGGCCTCAGCTGTTTTAGTCGTTATAGGGTTATATGTCCGACGTCGTTTACAGGAAACACCTTTGTTTAAATTAGCTCAAGAACGTGATAACACAGCTGCTTCGCCTCTTCGTGAAGTATTCAAATCTAATTGGCGTGAAATCTTAAAAGGAACTTTCATCATGGGAGCAACCTATGCACTATTCTTTACATTAACAACTTGGTCATTATCATATGCTACAACAGCTTTAGGTTTTACCTCTTCGGAATTTTTATTATTATTAATGGGTGCAATTGTTGAATTCGCTGCTTTGATCATGTTAACTTCTGTATTAGCAGATCGTGTTGGTCGGAAAAAAGTTCTATTAACTGCGTCAGTAGCACTAGTTGGCTATTCCTTGGTATTCCCATATTTCCTTACAGGACAACATAACTTAGTTGGCGTTTTACTCTTCTTAGGACTAGGATTCTTAGTAATGGGCACTCTTTATGGTCCAGTCGGTGCTGTTTTGCCTGAACTGTTCCCAACCAGAGTTCGCTATTCTGGTGCAGGAATTACTTATAACTTAGCTGCAGTGGTTGGGGCAGCCGTTGCTCCAACTGTAACAACGTGGTTAATTGCTAATTATGGATTACATTCGGCTGGATATTATATGCTAGTTTTATCAGTACTAGCAGTTATTTCTTGGTTATTGACAAAAGAAACAAAGGATGTGGATTATACTAAATAA > 654 LRH_12509 COG0477_Permeases_of_the_major_facilitator_superfamily D-xylose_proton-symporter EDY99267.1 11 MRKAGVVSNKGDAALAPQPDLGVKSEKLPKSARRRLRVISIIATFGGMLFGYDTGVINGALPFMTRAGELNMSPSMEGLVASSLTLGAAFGAVLTGRISDRRGRHKVITGLAILFVVSTIASALSPTAPILASVRFVLGLAVGGASVIVPTFLAEVAPSNLRGRIVTQNEFMIVSGQLLAFVFNAILGTTLGHIPGIWRWMLVLATVPAVILWIGMNFVPESPRWLAANGKLDQALTVLRQIRTEDQAQDEMEKIRISLKSEQEVQSASIKDLKIRWIRRLVLIGIGLGIMQQIVGINVMMYYGTTILQTTGFGQNAALIANILNGVTSVVATIVTMHLMGKYKRRPMLLTGIMGTLFSLIGITLTSHFLAGSPMLPYFTILLTVIYLAFFQGALGPLTWLLLSEIYPARIRGLGMGFATFFLWIGNFFVGYFFPVMLASIGMSNTFLVFVGANIISLIFAWKFAPETAGRTLEEIELDNKFDDKFPEKSKINKN Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_rhamnosus_HN001 Lactobacillus_rhamnosus_HN001 ABWJ01000009 41312..42799 Collett,M.A.,_Rand,C.J.,_Mason,C._and_Stanton,J.-A.L. NA 0:1488 Genome_was_manually_curated_based_on_annotation_generated_by_theNCBI_Prokaryotic_Genomes_Automatic_Annotation_Pipeline_Group.Information_about_the_Pipeline_can_be_found_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.DNASource:_Michael_Collett_Fonterra_Research_Centre_PalmerstonNorth,_New_Zealand;_michael.collett@fonterra.comThis_version_of_the_project_represents_36x_coverage_of_the_genomeThe_complete_plasmids_pLR001_and_pLR002_were_deposited_in_GenBankAccession_Numbers_CP001155_and_CP001156,_respectively. NA 11-SEP-2008 Lactobacillus_rhamnosus_HN001_contig00101,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_rhamnosus_B5QM67_LACRH.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 199591137 Submitted_(03-SEP-2008)_Fonterra_Research_Centre,_Private_Bag_11029,_Palmerston_North_4442,_New_Zealand NA ABWJ01000009 NA NA Lactobacillales low_GC_Gram+ NA 1488 NA genomic_DNA NA HN001 NA Lactobacillus_rhamnosus_(Hansen_1968)_Collins_et_al._1989 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 486408 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Direct_Submission NA ABWJ01000009.1 ATGCGTAAAGCAGGGGTTGTTAGTAACAAAGGCGATGCTGCACTGGCTCCCCAGCCGGATTTGGGGGTTAAATCCGAAAAATTGCCAAAATCGGCTCGTCGTCGTTTGCGGGTTATCTCGATTATCGCAACATTTGGCGGGATGCTTTTTGGATATGACACTGGGGTTATCAACGGCGCGTTACCGTTTATGACCAGAGCAGGCGAACTGAATATGTCGCCTTCCATGGAGGGCTTAGTGGCCAGCTCGTTAACATTGGGGGCGGCCTTTGGTGCTGTTTTGACCGGGCGCATTTCGGATCGGCGTGGGCGGCACAAGGTCATTACCGGACTTGCTATCTTGTTCGTCGTTTCGACCATCGCCTCAGCATTATCACCGACCGCACCAATCTTGGCGTCCGTGCGCTTCGTCTTGGGCTTAGCGGTGGGCGGTGCTTCGGTTATTGTGCCAACATTTCTAGCTGAAGTCGCACCCTCGAATCTTCGCGGACGAATCGTCACACAAAACGAGTTCATGATTGTTTCTGGGCAGTTGTTGGCGTTTGTGTTTAACGCGATTTTGGGGACAACGTTAGGTCATATTCCTGGCATTTGGCGGTGGATGCTTGTTTTGGCAACGGTGCCCGCAGTTATTTTGTGGATTGGGATGAATTTTGTTCCGGAATCGCCGCGCTGGTTAGCCGCTAATGGCAAATTGGATCAGGCGTTAACGGTGTTGCGGCAAATTCGGACAGAAGACCAAGCGCAAGACGAAATGGAAAAAATTCGAATTTCCTTAAAATCGGAACAAGAAGTGCAAAGTGCCTCGATTAAGGATTTAAAGATTAGATGGATTAGACGACTTGTTTTAATCGGCATTGGCTTGGGGATTATGCAGCAGATCGTCGGTATCAACGTCATGATGTATTATGGCACCACGATCTTACAGACAACTGGATTTGGCCAAAATGCCGCTTTGATTGCCAATATTTTAAACGGTGTAACTTCAGTGGTCGCAACGATTGTGACGATGCATCTCATGGGTAAGTACAAACGCCGGCCAATGTTGCTGACTGGGATTATGGGGACCTTATTCTCGTTGATCGGCATCACGTTGACGAGTCATTTTCTCGCTGGCAGTCCAATGCTACCGTACTTCACGATATTATTGACCGTCATCTATCTGGCTTTCTTCCAAGGAGCATTGGGTCCGCTCACCTGGTTACTGCTTTCCGAAATTTATCCAGCACGTATTCGTGGCTTAGGTATGGGTTTTGCCACCTTCTTCTTGTGGATCGGTAATTTCTTTGTTGGATATTTCTTCCCAGTTATGTTGGCAAGTATAGGCATGTCGAACACGTTCCTTGTATTTGTCGGAGCCAATATTATTTCACTGATTTTTGCTTGGAAGTTTGCACCGGAAACAGCAGGCAGAACATTGGAGGAAATCGAATTGGACAACAAGTTTGACGATAAGTTCCCTGAAAAGAGCAAGATTAATAAGAATTAA > 655 LGG_00261 NA transporter_major_facilitator_superfamily_MFS_1,_Myo-inositol_transporter YP_003170007.1 11 MRKAGVVSNKGDAALAPQPDLGVKSEKLPKSARRRLRVISIIATFGGMLFGYDTGVINGALPFMTRAGELNMSPSMEGLVASSLTLGAAFGAVLTGRISDRRGRHKVITGLAILFVVSTIASALSPTAPILASVRFVLGLAVGGASVIVPTFLAEVAPSNLRGRIVTQNEFMIVSGQLLAFVFNAILGTTLGHIPGIWRWMLVLATVPAVILWIGMNFVPESPRWLAANGKLDQALTVLRQIRTEDQAQDEMEKIRISLKSEQEVQSASIKDLKIRWIRRLVLIGIGLGIMQQIVGINVMMYYGTTILQTTGFGQNAALIANILNGVTSVVATIVTMHLMGKYKRRPMLLTGIMGTLFSLIGITLTSHFLAGSPMLPYFTILLTVIYLAFFQGALGPLTWLLLSEIYPARIRGLGMGFAAFFLWIGNFFVGYFFPVMLASIGMSNTFLVFVGANIISLIFAWKFASETAGRTLEEIELDNKFDDKFPEKSKINKN Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_rhamnosus_GG Lactobacillus_rhamnosus_GG NC_013198 263021..264508 Morita,H.,_Toh,H.,_Oshima,K.,_Murakami,M.,_Taylor,T.D.,_Igimi,S._and_Hattori,M. NA 0:1488 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FM179322.COMPLETENESS:_full_length. NA 11-OCT-2011 Lactobacillus_rhamnosus_GG,_complete_genome. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_rhamnosus_C7T963_LACRG.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 258506995 J._Bacteriol._191_(24),_7630-7631_(2009) NA NC_013198 NA NA Lactobacillales low_GC_Gram+ 19820099 1488 NA genomic_DNA NA GG_(ATCC_53103) NA Lactobacillus_rhamnosus_(Hansen_1968)_Collins_et_al._1989 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 568703 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Complete_genome_sequence_of_the_probiotic_Lactobacillus_rhamnosus_ATCC_53103 NA NC_013198.1 ATGCGTAAAGCAGGGGTTGTTAGTAACAAAGGCGATGCTGCACTGGCTCCCCAGCCGGATTTGGGGGTTAAATCCGAAAAATTGCCAAAATCGGCTCGTCGTCGTTTGCGGGTTATCTCGATTATCGCAACATTTGGCGGGATGCTTTTTGGATATGACACTGGGGTTATCAACGGCGCGTTACCGTTTATGACCAGAGCAGGCGAACTGAATATGTCGCCTTCCATGGAGGGCTTAGTGGCCAGCTCGTTAACATTGGGGGCGGCCTTTGGTGCTGTTTTGACCGGGCGCATTTCGGATCGGCGTGGGCGGCACAAGGTCATTACCGGACTTGCTATCTTGTTCGTCGTTTCGACCATCGCCTCAGCATTATCACCGACCGCACCAATCTTGGCGTCCGTGCGCTTCGTCTTGGGCTTAGCGGTGGGCGGTGCTTCGGTTATTGTGCCAACATTTCTAGCTGAAGTCGCACCCTCGAATCTTCGCGGACGAATCGTCACACAAAACGAGTTCATGATTGTTTCTGGGCAGTTGTTGGCGTTTGTGTTTAACGCGATTTTGGGGACAACGTTAGGTCATATTCCTGGCATTTGGCGGTGGATGCTTGTTTTGGCAACGGTGCCCGCAGTTATTTTGTGGATTGGGATGAATTTTGTTCCGGAATCGCCGCGCTGGTTAGCCGCTAATGGCAAATTGGATCAGGCGTTAACGGTGTTGCGGCAAATTCGGACAGAAGACCAAGCGCAAGACGAAATGGAAAAAATTCGAATTTCCTTAAAATCGGAACAAGAAGTGCAAAGTGCCTCGATTAAGGATTTAAAGATTAGATGGATTAGACGACTTGTTTTAATCGGCATTGGCTTGGGGATTATGCAGCAGATCGTCGGTATCAACGTCATGATGTATTATGGCACCACGATCTTACAGACAACTGGATTTGGCCAAAATGCCGCTTTGATTGCCAATATTTTAAACGGTGTAACTTCAGTGGTCGCAACGATTGTGACGATGCATCTCATGGGTAAGTACAAACGCCGGCCAATGTTGCTGACTGGGATTATGGGGACCTTATTCTCGTTGATCGGCATCACGTTGACGAGTCATTTTCTCGCTGGCAGTCCAATGCTACCGTACTTCACGATATTATTGACCGTCATCTATCTGGCTTTCTTCCAAGGAGCATTGGGTCCGCTCACCTGGTTACTGCTTTCCGAAATTTATCCAGCACGTATTCGTGGCTTAGGTATGGGTTTTGCCGCCTTCTTCTTGTGGATCGGTAATTTCTTTGTTGGATATTTCTTCCCAGTTATGTTGGCAAGTATAGGCATGTCGAACACGTTCCTTGTATTTGTCGGAGCCAATATTATTTCACTGATTTTTGCTTGGAAGTTTGCATCGGAAACAGCAGGCAGAACATTGGAGGAAATCGAATTGGACAACAAGTTTGACGATAAGTTCCCTGAAAAGAGCAAGATTAATAAGAATTAA > 656 HMPREF0545_0346 NA major_facilitator_transporter EEJ74677.1 11 MKYIKKELQSKKDYKKAPFSDVHWRVYISILLGQIACGYALGISGIALDQAGSYLPLTNFWTGLIGAGGLIGLFGSIFMGRLADKVGRKGLLMLNMYIFTILSLAHLFVTNLFLIFLLRLGLGLMMAIDYTVGNALLIEWLPTGESGKKQSRLLIYWSIGFILAYLIGSYLGGFSQGWKYSFASSFIFGLIAAVFRSFAKIPASPSWLASRGKNAKAQKVIQRNLGSKWGLSERLLSIKVKNISWLHLFSKNYRRQTLVGGLFYASQAFSFFGISIFLPILLKSMGVTNADMSGILYNGSMLIGVVIGIWIFNKISRRSFLVVSFLSSAIALAAMVFLDISMWAKLGIFSLFSVILSSSLVLDYPYPSELFDVKVRATGMGICIAISRIGAACGTFLLPILTDMGGSQLAMLVCALVLLIGSMICLVWAPETSPKFMKKNEILENEVTE Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_salivarius_ATCC_11741 Lactobacillus_salivarius_ATCC_11741 ACGT01000002 88456..89805 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1350 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_ATCC._The_genomic_DNA_wasprepared_from_a_single_bacterial_isolate._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data,_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data_and_Illumina/Solexa_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_to_the_Illumina/Solexa_data_withmapping_tools_such_as_Mosaic_and_Crossmatch_and_these_data_wereused_for_error_correction_for_this_version_of_the_draft_assembly.This_draft_assembly_meets_the_HMP_draft_quality_standards_(morethan_90%_of_the_genome_is_included_in_contigs,_more_than_90%_of_acore_set_of_bacterial_genes_are_found_with_>_30%_identity_and_>_30%length;_more_than_90%_of_the_bases_in_the_assembly_have_more_than_5fold_sequence_coverage,_the_contig_N50_length_is_greater_than_5kb,the_scaffold_N50_length_is_greater_than_20kb,_and_there_is_lessthan_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_35xSequencing_Technology:_454;_ABI;_Solexa/IlluminaAnnotation_was_added_to_the_contigs_in_April_2009. NA 27-APR-2009 Lactobacillus_salivarius_ATCC_11741_contig00002,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_salivarius_C2EFC4_9LACO.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 223861920 Submitted_(08-JAN-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACGT01000002 NA NA Lactobacillales low_GC_Gram+ NA 1350 NA genomic_DNA NA ATCC_11741 NA Lactobacillus_salivarus NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 525364 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Direct_Submission NA ACGT01000002.1 ATGAAATATATCAAAAAAGAATTACAAAGTAAAAAGGATTACAAGAAGGCACCATTTTCAGATGTTCACTGGCGTGTCTACATTTCAATCTTGTTAGGACAGATTGCTTGTGGATATGCACTTGGAATAAGTGGTATTGCTTTAGATCAAGCAGGATCATATTTACCATTGACTAACTTTTGGACTGGTTTGATCGGTGCTGGTGGTCTTATTGGGTTATTCGGTAGTATTTTTATGGGACGTTTAGCTGATAAAGTCGGAAGAAAAGGGCTTTTGATGTTGAACATGTACATTTTTACAATCCTATCGTTAGCACACCTATTTGTAACAAATTTATTTTTAATTTTTCTTTTGCGATTAGGTTTAGGATTAATGATGGCTATTGATTATACAGTGGGTAATGCGTTGTTAATTGAATGGTTACCAACTGGTGAAAGTGGTAAAAAGCAAAGTAGATTATTAATTTACTGGTCAATAGGTTTCATTTTAGCGTACTTGATAGGTTCTTATTTAGGTGGATTTTCTCAAGGTTGGAAGTATAGTTTTGCCTCATCATTTATTTTTGGATTAATAGCTGCTGTATTCCGCTCATTTGCAAAGATTCCAGCTTCTCCAAGTTGGTTAGCAAGTCGTGGTAAAAATGCTAAAGCTCAAAAAGTAATTCAACGTAATTTAGGAAGTAAATGGGGATTATCAGAAAGACTTCTATCCATTAAAGTTAAAAACATTTCATGGCTACATCTTTTTAGTAAGAACTATCGTCGTCAAACATTAGTTGGTGGATTATTCTATGCTAGTCAGGCATTCTCATTTTTTGGTATAAGTATTTTCTTACCAATCTTGCTAAAGAGTATGGGAGTTACTAATGCCGATATGTCAGGTATTCTTTATAACGGAAGTATGTTAATTGGTGTAGTTATTGGGATCTGGATTTTTAACAAAATTAGTCGTCGCTCATTTTTAGTTGTCAGCTTTTTAAGTTCAGCGATTGCTTTAGCTGCAATGGTATTCTTAGATATATCAATGTGGGCTAAATTAGGTATCTTTTCTCTGTTTTCTGTGATCTTATCTTCATCATTGGTATTGGATTATCCATATCCTTCAGAGTTATTTGATGTTAAGGTTCGTGCAACAGGGATGGGTATCTGTATAGCTATCAGTCGAATTGGAGCTGCATGTGGTACATTCTTATTACCTATTTTAACTGATATGGGTGGCTCTCAATTAGCGATGTTAGTATGTGCTCTAGTCCTACTTATAGGAAGTATGATTTGTTTAGTATGGGCACCAGAAACATCACCTAAGTTTATGAAAAAGAATGAAATTCTTGAAAATGAAGTAACAGAATAA > 657 HMPREF0548_1372 NA major_facilitator_transporter EEJ71759.1 11 MENNENIRRERIIKTKKNYKRAPLMPVHLRVLIAVILGQIACGYSLGISGTALSNAAKYIQISDLWTGLIGAGSLIGLAGSLLVGRLSDKIGRRKMLMINMYVLTIFTLLHLLTANFLLTFIIRVGIGLMIAVDYTVGNALLTEWLPKGEDSKRQSHLLIYWTISFILSYLAGSFITGLGSYTWQVILATGAVPALITALFRSFFPLPASPSWLASKGKVKKANKIIRKHMGRKWRLPARFMRRDKAKKPKNISWAILFSKKYLRHTLVGGIFYACQAFSFFGISIFLPILLKSMNITNSSISGLIYNGGMMVGVIIGILLFNRISRRAFLISNFFLSAVLIGTLAVLPNLNSILKLIIFALFAIILSSGLVLDYPYPTELFDIKVRGTGVGTCITISRIGAAAGTFLLPILTNQGGSNLAMIVCAIVLFFAFIVCLIWAPETSPQFNQK Bacillus/Lactobacillus/Streptococcus_group Lactobacillus_ultunensis_DSM_16047 Lactobacillus_ultunensis_DSM_16047 ACGU01000064 33725..35077 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1353 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_DSMZ._The_genomic_DNA_wasprepared_from_a_single_bacterial_isolate._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data_and_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_with_mapping_tools_such_as_Mosaic_andCrossmatch_and_these_data_were_used_for_error_correction_for_thisversion_of_the_draft_assembly._This_draft_assembly_meets_the_HMPdraft_quality_standards_(more_than_90%_of_the_genome_is_included_incontigs,_more_than_90%_of_a_core_set_of_bacterial_genes_are_foundwith_>_30%_identity_and_>_30%_length;_more_than_90%_of_the_bases_inthe_assembly_have_more_than_5_fold_sequence_coverage,_the_contigN50_length_is_greater_than_5kb,_the_scaffold_N50_length_is_greaterthan_20kb,_and_there_is_less_than_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_31xSequencing_Technology:_454;_ABIAnnotation_was_added_to_the_contigs_in_April_2009. NA 27-APR-2009 Lactobacillus_ultunensis_DSM_16047_contig00086,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactobacillus_ultunensis_C2ENX6_9LACO.gb Lactobacillus_Beijerinck_1901_(Approved_Lists_1980)_emend._Haakensen_et_al._2009 223861975 Submitted_(08-JAN-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACGU01000064 NA NA Lactobacillales low_GC_Gram+ NA 1353 NA genomic_DNA NA DSM_16047 NA Lactobacillus_ultunensis_Roos_et_al._2005 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 525365 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Lactobacillus Direct_Submission NA ACGU01000064.1 TTATTTTTGATTAAATTGTGGCGAAGTTTCTGGTGCCCAGATCAGACAAACGATGAAGGCAAAGAACAACACGATTGCACAAACAATCATTGCTAAATTGCTTCCACCTTGGTTGGTCAAAATAGGCAATAGAAAAGTTCCTGCGGCAGCTCCAATACGACTGATAGTGATGCATGTGCCTACACCAGTACCACGGACTTTGATATCAAAAAGTTCAGTTGGGTATGGGTAATCAAGAACTAGTCCAGATGACAAAATAATAGCAAATAATGCGAAAATAATTAATTTAAGAATAGAATTCAAATTAGGTAATACAGCTAATGTCCCGATCAAAACCGCAGAAAGGAAAAAGTTACTGATTAGGAAAGCACGTCTGCTGATGCGGTTAAAGAGCAGAATACCGATAATCACACCAACCATCATTCCGCCATTATAAATAAGTCCAGAAATACTGCTGTTAGTAATATTCATGCTTTTAAGCAAAATTGGCAGGAAAATACTAATGCCAAAGAATGAGAAAGCCTGACAAGCATAAAAGATACCACCAACAAGAGTATGGCGCAGATATTTTTTAGAAAATAGAATTGCCCAGGAAATGTTTTTAGGCTTCTTTGCTTTATCGCGTCTCATGAATCTTGCAGGCAATCTCCATTTGCGTCCCATATGTTTGCGGATAATTTTATTGGCCTTCTTGACTTTCCCTTTACTAGCTAACCAACTTGGGGATGCAGGAAGTGGGAAGAAGCTTCTAAATAAGGCAGTAATTAAGGCAGGCACTGCACCAGTTGCTAGAATAACTTGCCAAGTATAACTGCCTAAACCAGTAATAAATGATCCGGCTAAGTATGACAAGATAAAACTGATTGTCCAATAGATTAATAGATGACTCTGACGCTTGCTGTCTTCGCCTTTGGGTAACCATTCGGTTAATAGAGCATTACCGACAGTGTAATCAACGGCAATCATTAAACCAATACCGACTCTGATAATAAAAGTTAATAAGAAATTAGCTGTTAGTAAGTGCAGCAATGTAAAAATGGTTAAAACATACATGTTAATCATTAACATTTTGCGTCGACCGATTTTATCAGATAAACGTCCTACCAAAAGGCTGCCAGCCAGTCCAATTAGTGATCCTGCTCCAATTAAACCAGTCCATAAATCACTGATTTGAATATACTTGGCAGCATTAGAAAGTGCGGTACCACTAATTCCCAGGGAATACCCACAGGCGATTTGACCTAGGATGACTGCAATTAACACTCGTAAATGAACTGGCATTAATGGTGCGCGTTTATAATTCTTTTTAGTTTTGATAATTCTTTCACGTCTAATATTCTCGTTATTTTCCAT > 658 NA transport_and_binding_protein D-xylose_proton-symporter AAU08245.1 11 MRKLSPTFIYFFGALGGLLFGYDTGVISGALLFIEKESWQVSSWAWMEGWITAAVLMGAVIGAVVIGPMSDRFG Bacillus/Lactobacillus/Streptococcus_group Lactococcus_lactis_subsp._lactis_NCDO_2118 Lactococcus_lactis_subsp._lactis_NCDO_2118 AY702978 326..548 Miyoshi,A.,_Jamet,E.,_Commissaire,J.,_Renault,P.,_Langella,P._and_Azevedo,V. NA 0:>223 NA NA 04-SEP-2004 Lactococcus_lactis_putative_acetyltransferase_(xylX)_and_D-xylose_proton-symporter_(xylT)_genes,_partial_cds. NA Streptococcaceae_Deibel_and_Seeley_1974 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lactococcus_lactis_Q66UT3_9LACT.gb lactic_streptococci 51599170 Unpublished NA AY702978 NA NA Lactobacillales low_GC_Gram+ NA 223 NA genomic_DNA NA NCDO2118 NA Streptococcus_lactis_(Lister_1873)_Lohnis_1909_(Approved_Lists_1980) NA forward NA NA NA NA NA NA Streptococcus_lactis_subsp._lactis_(Lister_1873)_Lohnis_1909 NA NA NA prokaryotes NA 1117941 Bacteria,_Firmicutes,_Lactobacillales,_Streptococcaceae,_Lactococcus A_xylose-inducible_expression_system_for_Lactococcus_lactis NA AY702978.1 ATGAGAAAACTTTCTCCCACTTTCATCTATTTTTTTGGTGCTTTAGGTGGCTTATTATTTGGATATGACACAGGCGTCATATCGGGAGCGCTACTTTTTATTGAAAAAGAGAGCTGGCAGGTGAGTTCTTGGGCTTGGATGGAAGGATGGATTACAGCGGCAGTCTTAATGGGAGCTGTAATTGGCGCGGTCGTGATTGGACCAATGAGTGACCGTTTTGGTC > 659 Lbys_3185 COGs:_COG1539_Dihydroneopterin_aldolase;_InterPro_IPR006157:IPR006156;_KEGG:_dfe:Dfer_2889_dihydroneopterin_aldolase;_PFAM:_dihydroneopterin_aldolase;_SPTR:_Dihydroneopterin_aldolase;_TIGRFAM:_dihydroneopterin_aldolase;_PFAM:_Dihydroneopterin_aldolase;_TIGRFAM:_dihydroneopterin_aldolase;_FolB_domain dihydroneopterin_aldolase YP_003999199.1 11 MGKISLEGMEFFAHHGVWDEEQKVGNRYIIDLHIEADLEKSGVTDHLEDTLDYGKIYGIVAEEMRISSRLLENIGHRVLSRLRAEFPEAGKMTIEVSKCNPPVGGIVKRSKITLENH Cytophagia Leadbetterella_byssophila_DSM_17132 Leadbetterella_byssophila_DSM_17132 NC_014655 3587244..3588416 Abt,B.,_Teshima,H.,_Lucas,S.,_Lapidus,A.,_Del_Rio,T.G.,_Nolan,M.,_Tice,H.,_Cheng,J.F.,_Pitluck,S.,_Liolios,K.,_Pagani,I.,_Ivanova,N.,_Mavromatis,K.,_Pati,A.,_Tapia,R.,_Han,C.,_Goodwin,L.,_Chen,A.,_Palaniappan,K.,_Land,M.,_Hauser,L.,_Chang,Y.J.,_Jeffries,C.D.,_Rohde,M.,_Goker,M.,_Tindall,B.J.,_Detter,J.C.,_Woyke,T.,_Bristow,J.,_Eisen,J.A.,_Markowitz,V.,_Hugenholtz,P.,_Klenk,H.P._and_Kyrpides,N.C. NA 1169:>1173 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002305.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4083304Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_Cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Leadbetterella_byssophila_4M15,_DSM_17132collection_date_::_Missinglat_lon_::_Missingdepth_::_Missingalt_elev_::_Missingcountry_::_South_Koreaenvironment_::_Missingnum_replicons_::_1ref_biomaterial_::_DSM_17132,_KACC_11308biotic_relationship_::_Free_livingtrophic_level_::_Missingrel_to_oxygen_::_Aerobeisol_growth_condt_::_Missingsequencing_meth_::_WGSassembly_::_Newbler_v._2.3_(pre-release)finishing_strategy_::_FinishedGOLD_Stamp_ID_::_Gi02316Type_Strain_::_YesGreengenes_ID_::_115032Funding_Program_::_DOE-GEBA_2007Isolation_Site_::_Cotton-waste_composts_used_as_mushroom_cultivation_in_South_KoreaCell_Shape_::_Rod-shapedMotility_::_NonmotileTemperature_Range_::_MesophileGram_Staining_::_Gram-Diseases_::_None##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_FinishedAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_30xSequencing_Technology_::_454/Sanger##Genome-Assembly-Data-END##COMPLETENESS:_full_length. NA 26-JAN-2012 Leadbetterella_byssophila_DSM_17132_chromosome,_complete_genome. NA Vitreoscillaceae_Pringsheim_1949_(Approved_Lists_1980) /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Leadbetterella_byssophila_E4RVA7_LEAB4.gb Leadbetterella_Weon_et_al._2005 312128809 Stand_Genomic_Sci_4_(1),_2-12_(2011) NA NC_014655 NA NA Cytophagales_Leadbetter_1974 Cytophaga-Flexibacter-Bacteroides_phylum 21475582 1173 NA genomic_DNA NA DSM_17132 NA Leadbetterella_byssophila_Weon_et_al._2005 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 649349 Bacteria,_Bacteroidetes,_Cytophagia,_Cytophagales,_Cytophagaceae,_Leadbetterella Complete_genome_sequence_of_Leadbetterella_byssophila_type_strain_(4M15) NA NC_014655.1 TCATATCGTAGATACTGAATGTTTTCTGTTATAAATCAATAGGTAAATCAAGGCTATGGACACTACTGCAGTAGTAAAAATAAAGGATGCCGGTAAATTCTCCACTCTATTCTGATAAATAAATGTAGGAAGTAAAGCACCTAACCCTATACCTGCTTCTAAGGCGATATACATGGTAGCTACGGCTTTACCCCTGTTTTCTTCCCTGCAAAGGTCAATGGTCCAAGCCTGAGTGATGGGTGATACTATTCCATTACCTATCCCAAAGAGTACCCCAGAGATGGAAAGGAGTATGATTTCGTGGGTGAATGCCAAGCAAAGCAAAGCTAAAATCATGAACAAGGTTCCAATGATCAATACATTGGGCCTACCTTTTCTATCTGACCATCTGCCCGCTATAAATCGAATACCAATGGATGCTAATGTATAGACAAGGAAGTAATAACCTTTGTTCTTTAAGCCGATACTCTGACTTAAATCTGGAATTAAAGTAATCACTGCACCATAAGAAAACAGGCAAAAGAAAACTACTATAACCACAGGAAGCACACTTCCATCAAAAATGTCGTTTCTGTTAATTTTTAATAGTGACCAACTATACTTCTCTTGCCTTTCTTTAGGTAAAGTCTCCTTCATATTGAAGAGAATGGCTATAGAAAGAAAGGAAAGTAAAGAGGAGGCATAAAATAATATATTGATGTCATAGTGTTGGACTATCCATCCGCCGAGAAACGGACCAAAGGCCATTCCCAAACTCCCTATCAAGCCATGAATGCCCATGCTTTCACCTCTTCTGTTAAACGGTACTATGTCTGCAATATAGGCAGAGGTTCCTGTGGGTTTAAAGCCGGTAGAAAAACCGTGGATCAGACGTAAGAATAGAAATGGGAAAACCGTAGTAGTCAAGGGGTATAAGAATCCACATACAAAGCATACCAGGGAGCCAAAAGCCATCACCGGCACACGACCCACCTTGTCCGAAAGTTTTCCACTAAAGGGTCTCGAAATGCCAGCGGTTAGAGTAAATAGGGCTATGATCAGTCCTTTAAATTCTCCTCCACCCATATCCGTCAGGTACTGAGGAAGCTCAGGAATGAGCATATTAAAGCTGGAAAAAAATAAGAATGAGCTGGCACACAAAAGCCAGAATTGTAAGGTAAATACCCGGTTCAA > 660 LLB_2520 NA D-xylose-proton_symporter EEZ93628.1 11 MTWVVAIIGSVAGFLFGYDEGIIAGSLELVKNHFDLSATHIGVMASALPFGALLGSMLIGAITASKGVKRFGRRTLLSFSGMLFFLGALGAGFADSITVLIISRLILGLAIGVASVMAPLYLAETATYEKRGAVVAIYQLAMTVGIVCSYSVNYLLLENHDWRAMFASSAFPALVLSLGILLMPESPRWLCSVGRRDAASKALRKLRKSDSIEHELIDIEATLGNEPKKGSWLLLFRNPLLPVLLLGTALFCLQQLSGINVIIYFAPEIFKNLGLNSTTGQILATIGIGMVNLLVTIIAILSVDKIGRRKLLLFGFSGMFISLLALCLFSLNQVVWLPYLSVACLILYIFSFAVSVGPIPHIAMAEIFPLHVRGAGMGLSAMSNWTFNTVVIFSFPLLEKMMGIEYTFALYAVICLAGLVYSYFYMPETKNMSLEQIENYIISGKPLRLLGRERERPVEEIRKAKSTYITST gamma_subgroup Legionella_longbeachae_D-4968 Legionella_longbeachae_D-4968 ACZG01000002 145501..146919 Kozak,N.A.,_Buss,M.,_Lucas,C.E.,_Frace,M.,_Govil,D.,_Travis,T.,_Olsen-Rasmussen,M.,_Benson,R.F._and_Fields,B.S. NA 0:1419 DNA_was_extracted_from_Legionella_longbeachae_serogroup_1_clinicalisolate_D-4968_deposited_into_the_CDC_reference_diagnostics_libraryin_2000._The_isolate_was_obtained_from_a_bronchial_wash_sampletaken_from_a_77-year-old_Oregon_woman_who_was_diagnosed_withlegionellosis.Genome_Coverage:_19.3xSequencing_Technology:_454. NA 30-NOV-2009 Legionella_longbeachae_D-4968_Cont_LLB_02,_whole_genome_shotgun_sequence. NA Legionellaceae_Brenner_et_al._1979 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Legionella_longbeachae_D1RJH2_LEGLO.gb Sarcobium_Drozanski_1991 269987228 J._Bacteriol._192_(4),_1030-1044_(2010) NA ACZG01000002 NA NA Legionellales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives 20008069 1419 NA genomic_DNA NA D-4968 NA Legionella_longbeachae_McKinney_et_al._1982 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 638315 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Legionellales,_Legionellaceae,_Legionella Virulence_factors_encoded_by_Legionella_longbeachae_identified_on_the_basis_of_the_genome_sequence_analysis_of_clinical_isolate_D-4968 NA ACZG01000002.1 ATGACATGGGTTGTTGCCATTATTGGTTCAGTTGCTGGTTTTTTATTTGGATATGATGAAGGGATTATTGCTGGTTCATTGGAGTTAGTCAAAAATCATTTTGACCTTTCTGCAACTCATATTGGTGTAATGGCTTCTGCACTACCTTTTGGCGCTTTGTTAGGGTCGATGTTGATTGGCGCAATTACGGCATCAAAAGGAGTCAAACGTTTTGGTCGCAGGACGTTACTATCTTTTTCAGGAATGTTATTCTTTTTGGGGGCATTGGGAGCAGGATTTGCTGACTCTATTACGGTTCTTATTATTTCTCGTTTAATACTTGGTTTGGCGATAGGGGTTGCATCAGTAATGGCCCCATTGTATCTCGCAGAAACCGCAACTTATGAAAAACGAGGTGCTGTGGTTGCTATCTATCAATTAGCCATGACGGTAGGAATTGTCTGCTCCTATTCAGTAAATTATTTGCTCCTTGAAAATCATGATTGGCGAGCGATGTTTGCTTCAAGTGCTTTCCCAGCGTTGGTTTTAAGCCTGGGTATTTTACTGATGCCAGAGTCACCTAGATGGTTGTGTAGTGTAGGTCGACGTGATGCAGCGTCCAAAGCTTTGAGAAAGTTACGTAAAAGCGATTCTATTGAACATGAGTTAATTGATATTGAAGCAACTTTAGGGAATGAACCCAAAAAAGGGAGTTGGCTGTTATTGTTCAGAAATCCTTTATTGCCTGTATTGTTGTTGGGTACAGCTTTGTTTTGCTTACAACAGTTAAGTGGGATTAATGTAATTATTTATTTTGCTCCCGAAATTTTTAAAAATTTAGGTTTAAATAGTACTACAGGCCAAATACTGGCAACTATCGGTATTGGTATGGTTAATTTGCTGGTGACGATTATTGCAATACTTAGTGTGGATAAGATAGGGCGTCGCAAACTGTTGTTATTTGGTTTTTCCGGGATGTTCATTAGCCTGTTGGCTTTGTGTCTGTTCTCCTTAAATCAAGTAGTCTGGCTCCCTTATTTGTCTGTTGCTTGCTTAATTCTTTATATTTTTTCTTTTGCTGTAAGTGTAGGACCAATACCCCATATTGCCATGGCAGAAATTTTTCCTTTACACGTCCGCGGTGCGGGAATGGGGTTGTCTGCTATGAGCAACTGGACTTTTAACACAGTGGTTATTTTTAGTTTCCCACTTTTAGAAAAAATGATGGGTATCGAGTATACATTTGCCCTATATGCGGTGATTTGTCTTGCGGGGTTAGTCTATTCTTACTTTTACATGCCGGAGACAAAAAATATGAGCCTGGAGCAGATTGAAAATTATATAATATCAGGTAAACCCTTACGTCTGTTGGGACGTGAAAGAGAACGTCCAGTTGAGGAAATTAGGAAAGCAAAATCTACTTACATTACTTCGACCTAA > 661 lpa_02389 NA D-xylose-proton_symporter YP_003618933.1 11 MNKGMNAFVFLIAVIAGFGGFLFGFDSSVIADVKDQVISQLALTDWQWAQVVSSSLLGCILGIPISGLVADKLSRRSLLKVVALGFILGSSLCALAPGFVSILLGRFIIGICIGIASYIAPLFIAEIAPPHQRGTLVLINGLTITFGQAIAYLIGYFLHDYSLMSWRYLFWIGSLPALVLFSGMYFVPHSPRWIMMKYGADATLKTLKQIRPVGYNIQQELTEISNNLVNPAPAYIQMFKKPIVFVLLLGVGLGLFQQFSGINALMYYGPVVFESFGFSPVKNAILATFFLGLVNFIFTVVTLFYVDKLGRRFLLISGTLIASISLYLVSLLSSNSLLVNKFWILGGLSFYVMGYCISLGSLFWVLISEIYPLSVRGLAMSIATVFQWGANFVVSLLFLPIYQFSGQTVTFAMFATFCLLACWFIYYFVPETTSVSLEKLEDNLSSGKKIRDIGQPVSKNIKIAKFNLIMD gamma_subgroup Legionella_pneumophila_2300/99_Alcoy Legionella_pneumophila_2300/99_Alcoy NC_014125 1892358..1893773 DAuria,G.,_Jimenez-Hernandez,N.,_Peris-Bondia,F.,_Moya,A._and_Latorre,A. NA 0:1416 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001828.DNA_Source:_Legionella_pneumophila_serogroup_1_strain_2300/99Alcoy,_Pontiak_(Knoxville)_Health_Institute_Carlos_III,_NationalCenter_of_Microbiology,_Spain.COMPLETENESS:_full_length. NA 26-JAN-2012 Legionella_pneumophila_2300/99_Alcoy_chromosome,_complete_genome. NA Legionellaceae_Brenner_et_al._1979 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Legionella_pneumophila_D5TDP7_LEGP2.gb Sarcobium_Drozanski_1991 296105497 BMC_Genomics_11_(1),_181_(2010) NA NC_014125 NA NA Legionellales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives 20236513 1416 NA genomic_DNA NA 2300/99_Alcoy NA Legionella_pneumophila_Brenner_et_al._1979 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 423212 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Legionellales,_Legionellaceae,_Legionella Legionella_pneumophila_pangenome_reveals_strain-specific_virulence_factors NA NC_014125.1 TTAATCCATAATTAAATTAAATTTTGCTATTTTTATATTTTTCGATACTGGTTGACCTATATCTCTTATTTTTTTTCCAGAGCTTAAATTGTCTTCCAGTTTTTCCAGCGATACCGATGTGGTTTCCGGGACAAAATAATAAATAAACCAGCATGCCAGCAAACAAAAGGTAGCAAACATAGCAAAGGTAACTGTTTGGCCTGAGAATTGATAAATGGGAAGAAACAAAAGTGATACAACAAAATTAGCGCCCCATTGAAACACTGTGGCAATGCTCATTGCCAAACCACGCACTGATAAGGGATATATTTCGGATATTAAAACCCAGAACAGAGACCCCAGGCTAATGCAATACCCCATTACATAAAATGACAAACCGCCTAAAATCCAGAATTTATTGACGAGTAAGGAGTTGCTGGATAATAAGCTAACAAGATACAAGCTAATTGATGCGATCAAAGTACCACTGATTAACAAAAACCTTCTGCCTAATTTATCAACATAAAAAAGGGTAACCACTGTAAAAATAAAATTGACCAGACCCAAAAAAAAGGTAGCGAGAATTGCATTTTTAACTGGAGAAAACCCAAATGATTCAAAGACAACAGGTCCATAATACATCAAGGCATTGATCCCGGAAAATTGCTGGAATAGTCCTAAACCAACTCCTAATAAGAGAACAAAAACAATTGGTTTTTTAAACATCTGGATATAGGCTGGTGCAGGATTAACTAAATTATTACTAATTTCAGTCAATTCCTGCTGAATATTATATCCAACTGGTCTAATTTGCTTTAAGGTCTTTAAAGTAGCATCAGCTCCATATTTCATCATTATCCAGCGGGGTGAATGAGGGACAAAATACATTCCTGAAAATAAAACGAGAGCAGGTAGACTCCCTATCCAAAATAAATATCTCCAACTCATTAAAGAATAATCATGGAGAAAATAGCCAATTAAATAGGCGATAGCCTGACCAAACGTGATGGTTAGTCCATTAATCAATACTAAAGTTCCCCTCTGATGAGGCGGCGCGATTTCTGCAATGAATAAAGGAGCAATATAGGAGGCAATACCTATGCAAATGCCGATAATAAATCGTCCGAGTAATATCGAAACGAAGCCGGGAGCCAAAGCACATAAACTACTCCCCAGTATAAAACCTAAAGCTACTACTTTTAATAAGGATCGTCTGCTTAACTTATCTGCGACAAGACCACTTATGGGTATTCCCAATATACATCCCAATAAACTACTGCTGACAACTTGTGCCCATTGCCAGTCTGTTAGTGCCAATTGGGAGATAACCTGATCTTTCACATCAGCTATGACGCTGGAATCAAACCCGAATAAAAAACCGCCAAATCCGGCAATTACCGCGATCAGGAATACAAATGCGTTCATTCCCTTGTTCAT > 662 LPW_05031 NA hypothetical_protein CBW98694.1 11 MAWIVAIIGSIAGFLFGYDEGIIAGSLGLVKNHFNLNATHIGVMASALPFGALFGSLLIGAFMASKCVKRFGRCSLLSFAGFLFFVGALGAGFAETISVLILSRLILGLAIGMASVLTPLYLAETAAVQSRGAVVAIYQLALTVGIVCSYSVNYLLIEQQAWRAMFASSAIPALLLSLGILFMPESPRWLCSVGRHDAAANSLRKLRGKQSVEQELKEIEATLANEPKQGNWLLLFQKPLLPVLMLGTILFCLQQLSGINVVIYFAPEIFKNLGLGSTTGQILATMGIGLVNLLVTIIAILYVDKLGRRKLLLLGFAGTSLSLFALSLFSLNHVAWLSYLSVICLMVYIFSFAISVGPIPHIAMAEIFPLHVRGAGMGMSSMSNWSFNTIVIFSFPVLHQMFGIEMTFVLYAVICFLGFIYAYIYMPETRNISLEQIETYIMSGKPLRFLGREDEEVNAVSTKSESSLLASTN gamma_subgroup Legionella_pneumophila_130b Legionella_pneumophila_130b FR687201 538658..540079 Schroeder,G.N.,_Petty,N.K.,_Mousnier,A.,_Harding,C.R.,_Vogrin,A.J.,_Wee,B.,_Fry,N.K.,_Harrison,T.G.,_Newton,H.J.,_Thomson,N.R.,_Beatson,S.A.,_Dougan,G.,_Hartland,E.L._and_Frankel,G. NA 0:1422 Data_release_policy_http://www.sanger.ac.uk/legal/#t_2_Raw_454sequence_reads_can_be_obtained_from_the_Sequence_Read_Archive_underaccession_number_ERA011231. NA 31-OCT-2010 Legionella_pneumophila_130b_draft_genome. NA Legionellaceae_Brenner_et_al._1979 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Legionella_pneumophila_E1Y0W1_LEGPN.gb Sarcobium_Drozanski_1991 307608751 J._Bacteriol._192_(22),_6001-6016_(2010) NA FR687201 NA NA Legionellales_Garrity_et_al._2005 purple_photosynthetic_bacteria_and_relatives 20833813 1422 NA genomic_DNA NA 130b NA Legionella_pneumophila_Brenner_et_al._1979 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 866628 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Legionellales,_Legionellaceae,_Legionella Legionella_pneumophila_strain_130b_possesses_a_unique_combination_of_type_IV_secretion_systems_and_novel_Dot/Icm_secretion_system_effector_proteins NA FR687201.1 ATGGCTTGGATTGTCGCAATAATTGGGTCAATTGCCGGTTTTTTATTTGGTTACGATGAGGGAATAATAGCAGGTTCTCTTGGACTGGTAAAAAATCATTTTAATCTGAATGCAACCCACATTGGCGTTATGGCTTCTGCTTTACCTTTTGGGGCATTGTTTGGTTCGCTGTTGATTGGTGCATTTATGGCATCAAAGTGTGTAAAACGTTTCGGTAGATGTTCTTTATTATCCTTTGCCGGTTTTTTGTTCTTTGTTGGAGCCCTGGGTGCCGGTTTTGCTGAAACCATTTCAGTGTTGATTTTATCTCGATTAATTTTAGGTTTGGCCATTGGAATGGCTTCAGTTTTAACTCCATTATACCTGGCTGAAACAGCAGCCGTGCAATCACGTGGCGCAGTGGTTGCAATTTATCAACTTGCATTGACTGTGGGTATTGTTTGTTCTTATTCAGTCAATTATTTATTGATAGAGCAGCAAGCGTGGCGTGCAATGTTTGCTTCAAGTGCTATCCCAGCCTTGTTATTGAGCCTGGGGATTTTGTTTATGCCAGAGTCTCCCAGGTGGTTATGCAGCGTTGGACGTCATGATGCAGCAGCAAACTCCTTAAGAAAATTGAGAGGCAAACAATCAGTTGAGCAAGAGTTAAAAGAAATTGAAGCCACACTGGCGAACGAACCAAAACAAGGCAACTGGCTACTTCTATTCCAAAAGCCCTTGTTGCCTGTGTTGATGTTAGGAACAATATTATTTTGTTTACAACAATTAAGCGGTATCAATGTGGTAATTTATTTTGCACCAGAAATATTCAAGAATTTAGGCTTGGGCAGCACGACTGGACAAATATTAGCGACAATGGGGATTGGGTTAGTTAATTTACTGGTTACTATTATTGCCATTTTGTATGTCGATAAGCTAGGGCGACGCAAATTACTCTTACTGGGTTTTGCAGGAACCAGTTTGAGCTTGTTTGCATTATCGCTGTTTTCATTAAATCATGTTGCCTGGCTATCTTATTTATCCGTTATTTGCTTAATGGTTTATATTTTTTCTTTTGCAATCAGCGTGGGCCCTATCCCCCACATTGCTATGGCAGAAATTTTTCCCCTTCATGTCCGTGGTGCCGGTATGGGGATGTCATCCATGAGTAATTGGTCGTTTAATACGATAGTTATTTTTAGTTTTCCTGTTCTGCATCAAATGTTTGGTATAGAAATGACTTTCGTTCTGTACGCGGTAATCTGTTTCTTGGGGTTCATTTATGCTTATATTTATATGCCTGAAACCAGGAATATTAGTTTAGAGCAAATAGAAACTTATATAATGAGTGGCAAGCCATTACGGTTTTTAGGTAGAGAGGATGAGGAGGTTAATGCTGTGTCAACTAAATCAGAATCTTCTTTGCTGGCTTCAACAAATTGA > 663 LEMA_P116080.1 NA similar_to_MFS_sugar_transporter CBX94605.1 NA MGKMQGKTLQIAQLLLVVLPAFVLFGYNQSGVGGLLSLRDWNDHFPSINTIDATGAEKSAKSTKQGAVVATFTIGALFGALSCSWIGDILGRRKVIFGAAVLTLVGEILQCTSFQLAQFVVGRFILGWGVGALSATVPVWQSECSSSANRGKHVVLDGCFISLGYLLEAWINLGFFEQDNKPLQWRIPLAIPTLISLIPMAAVFSIPESPRWLVRKGRVEEARASLSAFKGVPMDDANVDTEISGIELALEETGRSAAKMSDIFTMGKDKLFYRFSLCIFLQFLQQMCGSNLISTYSTVSQLIPMQFSDMNTRNSNPRLQIIFQQGLGMSSETSRILSGGALTWKFLSCFVAFFTIDRFGRRKLFMFSGAGMASCMLALAVSSSFPTANHSAQIASALFVFLFNFFIPIGFLGANFLYCTEVAPTRLRVPMAGISTANHWLWNFVVNMVTPVAIETIAWKYYLVFLLISALIVPVVWFAYPETMGRSLEELEMMFVEGHGIRDIVRESRKPIAARGEAALEKGGGDEFR bitunicate_ascomycetes Leptosphaeria_maculans_JN3 Leptosphaeria_maculans_JN3 FP929125 85219..85488 Rouxel,T.,_Grandaubert,J.,_Hane,J.K.,_Hoede,C.,_van_de_Wouw,A.P.,_Couloux,A.,_Dominguez,V.,_Anthouard,V.,_Bally,P.,_Bourras,S.,_Cozijnsen,A.J.,_Ciuffetti,L.M.,_Degrave,A.,_Dilmaghani,A.,_Duret,L.,_Fudal,I.,_Goodwin,S.B.,_Gout,L.,_Glaser,N.,_Linglin,J.,_Kema,G.H.,_Lapalu,N.,_Lawrence,C.B.,_May,K.,_Meyer,M.,_Ollivier,B.,_Poulain,J.,_Schoch,C.L.,_Simon,A.,_Spatafora,J.W.,_Stachowiak,A.,_Turgeon,B.G.,_Tyler,B.M.,_Vincent,D.,_Weissenbach,J.,_Amselem,J.,_Quesneville,H.,_Oliver,R.P.,_Wincker,P.,_Balesdent,M.H._and_Howlett,B.J. NA 0:>270 NA NA 10-OCT-2011 Leptosphaeria_maculans_JN3_lm_SuperContig_21_v2_genomic_supercontig,_whole_genome,_isolate_v23.1.3. NA Leptosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Leptosphaeria_maculans_E4ZTP5_LEPMC.gb Leptosphaeria 312214649 Nat_Commun_2,_202_(2011) fungi FP929125 NA NA Pleosporales sac_fungi 21326234 270 NA genomic_DNA NA NA NA blackleg_of_rapeseed_fungus NA complement Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 985895 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Leptosphaeriaceae,_Leptosphaeria,_Leptosphaeria_maculans_complex Effector_diversification_within_compartments_of_the_Leptosphaeria_maculans_genome_affected_by_Repeat-Induced_Point_mutations NA FP929125.1 CTACCTGAACTCATCGCCTCCCCCTTTCTCTAAAGCCGCCTCCCCGCGCGCAGCAATAGGTTTCCGACTCTCCCTCACGATATCACGAATGCCATGGCCCTCTACAAACATCATCTCCAACTCCTCAAGGCTGCGGCCCATGGTCTCTGGGTACGCAAACCAGACGACTGGCACGATGAGAGCACTGATGAGCAGGAAGACGAGGTAGTATTTCCAGGCGATGGTTTCAATGGCCACGGGGGTTACCATGTTGACTACGAAGTTCCAGAG > 664 LEMA_P111620.1 NA similar_to_hexose_transporter CBX96243.1 NA MSPAGTASSARQAEPVLTRLVDLDDTPWYRKRNLRRLYALLLPTCIGIEMTSGFDSQMINAVQIAPAWHDYFNHPRGALLGIISAAYNLGAICSLPIVPYVNDTFGRRWAIFIGSWIMVVGSLVQTLSVRVGMYIGARFLLGFGIPFCIIAGSSLMGELAYPKERPIMTSLFNALWFVGSLIAAGISFATLSIKSDWAWRVPSILQAAPSLLQIIFIFFIPESPRFLISKDRHKEAWHTIVTYHAEGDYTSRFAAAEMAQIHHTIRIELANSKRSWLELLTVPGLRKRVIIGSFLGVFTQWSGNTLLSYYLNDLLGLIGYNDPEFIGKINVGLNSWNLVNAVIISLLVRRFPRRKMYLICASSLLCCYIIWTVAVQQYTTTRKLAPARLTIAIIFIYQACYNIGYNALTYTFLVELFPFAHRAKGITIFQFFGRSAAFFTTFVNPIGLNTIKWKWLITYCAWLAFEILFIYFMFPETYGRTLEELAFLFEDRARAEEATFNVEKQMEHSDHRYSRMDEQMSWEMDVVIPGDNNDEERMRRVSGSGQKQANASWWEE bitunicate_ascomycetes Leptosphaeria_maculans_JN3 Leptosphaeria_maculans_JN3 FP929128 592164..592374 Rouxel,T.,_Grandaubert,J.,_Hane,J.K.,_Hoede,C.,_van_de_Wouw,A.P.,_Couloux,A.,_Dominguez,V.,_Anthouard,V.,_Bally,P.,_Bourras,S.,_Cozijnsen,A.J.,_Ciuffetti,L.M.,_Degrave,A.,_Dilmaghani,A.,_Duret,L.,_Fudal,I.,_Goodwin,S.B.,_Gout,L.,_Glaser,N.,_Linglin,J.,_Kema,G.H.,_Lapalu,N.,_Lawrence,C.B.,_May,K.,_Meyer,M.,_Ollivier,B.,_Poulain,J.,_Schoch,C.L.,_Simon,A.,_Spatafora,J.W.,_Stachowiak,A.,_Turgeon,B.G.,_Tyler,B.M.,_Vincent,D.,_Weissenbach,J.,_Amselem,J.,_Quesneville,H.,_Oliver,R.P.,_Wincker,P.,_Balesdent,M.H._and_Howlett,B.J. NA 0:211 NA NA 10-OCT-2011 Leptosphaeria_maculans_JN3_lm_SuperContig_19_v2_genomic_supercontig,_whole_genome,_isolate_v23.1.3. NA Leptosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Leptosphaeria_maculans_E4ZXZ8_LEPMC.gb Leptosphaeria 312216156 Nat_Commun_2,_202_(2011) fungi FP929128 NA NA Pleosporales sac_fungi 21326234 211 NA genomic_DNA NA NA NA blackleg_of_rapeseed_fungus NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 985895 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Leptosphaeriaceae,_Leptosphaeria,_Leptosphaeria_maculans_complex Effector_diversification_within_compartments_of_the_Leptosphaeria_maculans_genome_affected_by_Repeat-Induced_Point_mutations NA FP929128.1 ATGTCGCCTGCGGGCACTGCATCTTCTGCGAGGCAGGCTGAGCCTGTGCTAACCCGACTCGTCGACTTGGACGATACGCCTTGGTATAGGAAAAGGAATCTCCGCAGGCTCTACGCGTTGTTACTACCAACATGCATCGGCATCGAGATGACTTCCGGCTTTGATTCGCAAATGATCAATGCTGTACAAATCGCGCCAGCATGGCATGACT > 665 LEMA_P077470.1 NA similar_to_sugar_transporter CBX98508.1 NA MDSQDYSDKDRTQHHDSAFEERGVVNTGNSVSAKIQNPLIHMTEDEMLQDVDSFAKEHDFEQHLPLLRKAALVARDPINMKKVPGITQEETDAISNEVLHKWRQPKILYFTIVLCSVGAAVQGWDQTGSNGANLSFPDALGIPTSEMVNGVVNPNAARNQWLQGLINAGPYIASAFFGCWLSDPLNNFFGRRGCIFISAIFCALSPIGSAVAQTWEQLFITRLLLGIGMGCKGASIPIFAAENAPASIRGALVMTWQLWTAFGIFLGTVANLAVKDTGRISWRLQFGSALIPALPLLIGVYFCPESPRWYMKKGKYTQAFKSLRRLRNNDIQAARDLYYIHAQLRVENSLISLKTNIVTRFIQLFTIPRLRRATVASGVVMIAQQMCGINIIAFYSSTIFEKAGASVTISLIASMGFGLVNFVFAFPALWTIDTFGRRTLLLFTFPQMAWTLLAAGLCYLIPQSSAAHLGLVALFVYLFGAWYSPGEGPVPFTYSAEVFPLSHREVGMSWAVATCLFWAAVLSITFPRMLSAMTPTGAFGFYAGLNLIALCLIFLFVPETKQRTLEELDYIFAIPTRKFISHQCGTVLPWWIKTYVMRKKIGPCPSLISFEGGGENDQALGEQVRKASLAGHGGEVRESSIADKASKAF bitunicate_ascomycetes Leptosphaeria_maculans_JN3 Leptosphaeria_maculans_JN3 FP929134 54915..55417 Rouxel,T.,_Grandaubert,J.,_Hane,J.K.,_Hoede,C.,_van_de_Wouw,A.P.,_Couloux,A.,_Dominguez,V.,_Anthouard,V.,_Bally,P.,_Bourras,S.,_Cozijnsen,A.J.,_Ciuffetti,L.M.,_Degrave,A.,_Dilmaghani,A.,_Duret,L.,_Fudal,I.,_Goodwin,S.B.,_Gout,L.,_Glaser,N.,_Linglin,J.,_Kema,G.H.,_Lapalu,N.,_Lawrence,C.B.,_May,K.,_Meyer,M.,_Ollivier,B.,_Poulain,J.,_Schoch,C.L.,_Simon,A.,_Spatafora,J.W.,_Stachowiak,A.,_Turgeon,B.G.,_Tyler,B.M.,_Vincent,D.,_Weissenbach,J.,_Amselem,J.,_Quesneville,H.,_Oliver,R.P.,_Wincker,P.,_Balesdent,M.H._and_Howlett,B.J. NA 0:>503 NA NA 10-OCT-2011 Leptosphaeria_maculans_JN3_lm_SuperContig_13_v2_genomic_supercontig,_whole_genome,_isolate_v23.1.3. NA Leptosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Leptosphaeria_maculans_E5A4G3_LEPMC.gb Leptosphaeria 312218538 Nat_Commun_2,_202_(2011) fungi FP929134 NA NA Pleosporales sac_fungi 21326234 503 NA genomic_DNA NA NA NA blackleg_of_rapeseed_fungus NA complement Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 985895 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Leptosphaeriaceae,_Leptosphaeria,_Leptosphaeria_maculans_complex Effector_diversification_within_compartments_of_the_Leptosphaeria_maculans_genome_affected_by_Repeat-Induced_Point_mutations NA FP929134.1 CTAGAACGCCTTGCTCGCCTTATCGGCAATACTAGACTCCCTGACTTCACCACCATGTCCAGCCAGACTAGCCTTGCGCACCTGTTCCCCGAGAGCTTGATCATTCTCACCACCTCCCTCAAAGCTGATAAGAGATGGGCAAGGTCCAATCTTCTTTCGCATGACATAAGTTTTGATCCACCATGGTAGCACAGTACCACACTGGTGGCTAATGAATTTCCGCGTGGGAATCGCAAAGATGTAGTCGAGCTCTTCAAGTGTGCGTTGCTTGGTCTCAGGTACAAAGAGGAAGATAAGACATAGAGCGATAAGGTTGAGGCCTGCATAGAATCCGAATGCGCCGGTTGGTGTCATGGCACTTAGCATGCGCGGGAAGGTGATTGACAAGACGGCTGCCCAGAACAGGCATGTTGCAACAGCCCAAGACATGCCGACTTCGCGATGAGAAAGTGGGAAGACCTCGGCGCTGTACGTGAAGGGCACTGGACCTTCTCCCGGCGAGT > 666 LEMA_P081020.1 NA similar_to_MFS_monosaccharide_transporter CBX98863.1 NA MTDTTSSLISNWKCILACTLVSMSPFQYGIDFGAIGGLQAMRGFLEVFGHPDPSVPLGYNLSPTRQQLISSLMILGAFLSSGSAGIFAAYLGRRHCLWLASLLCCVSNVVMMTTTSIGGLYAGRFLIGLANGWYMTFSQLYIQESAPARYRGLLISVFQIWTSIGSLIGTVIDNATHDMDGKNSYIIPLGTIYIIPVFMSVALIFIPESPRWLILVNKPEQARKAMLWLRPHPESVPTELAEIQAAIDAEKATKDSANFIDIWRDPVDRRRTLLAVAAVSTQAASGAMFMIAYGTYFFSMANVGSPFMNSCILTAVGVLAIIVNSCVISKIGRRRVFLMTGLSICGITQIIIAAVYHVEPGTVRTGKVIVGLSIIYIAGYNGMIAAYAWLSGGEIPSQRLRSYTFGVAAAVGFAGAWLATFTAPYFINPDALNWGWIWGPSCLVTVLWVYFYLPEIKNRTLEEIDEMFEARLSARKFRKYVCVGRAVMGADEKVVGRTGSTSTEKEDGVERLEVVGVSKTE bitunicate_ascomycetes Leptosphaeria_maculans_JN3 Leptosphaeria_maculans_JN3 FP929134 1157911..1158339 Rouxel,T.,_Grandaubert,J.,_Hane,J.K.,_Hoede,C.,_van_de_Wouw,A.P.,_Couloux,A.,_Dominguez,V.,_Anthouard,V.,_Bally,P.,_Bourras,S.,_Cozijnsen,A.J.,_Ciuffetti,L.M.,_Degrave,A.,_Dilmaghani,A.,_Duret,L.,_Fudal,I.,_Goodwin,S.B.,_Gout,L.,_Glaser,N.,_Linglin,J.,_Kema,G.H.,_Lapalu,N.,_Lawrence,C.B.,_May,K.,_Meyer,M.,_Ollivier,B.,_Poulain,J.,_Schoch,C.L.,_Simon,A.,_Spatafora,J.W.,_Stachowiak,A.,_Turgeon,B.G.,_Tyler,B.M.,_Vincent,D.,_Weissenbach,J.,_Amselem,J.,_Quesneville,H.,_Oliver,R.P.,_Wincker,P.,_Balesdent,M.H._and_Howlett,B.J. NA 0:429 NA NA 10-OCT-2011 Leptosphaeria_maculans_JN3_lm_SuperContig_13_v2_genomic_supercontig,_whole_genome,_isolate_v23.1.3. NA Leptosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Leptosphaeria_maculans_E5A5G5_LEPMC.gb Leptosphaeria 312218538 Nat_Commun_2,_202_(2011) fungi FP929134 NA NA Pleosporales sac_fungi 21326234 429 NA genomic_DNA NA NA NA blackleg_of_rapeseed_fungus NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 985895 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Leptosphaeriaceae,_Leptosphaeria,_Leptosphaeria_maculans_complex Effector_diversification_within_compartments_of_the_Leptosphaeria_maculans_genome_affected_by_Repeat-Induced_Point_mutations NA FP929134.1 ATGACCGATACCACGAGCTCGCTGATCAGCAACTGGAAATGCATTCTCGCATGCACACTTGTTTCCATGTCACCATTCCAGTATGGTATCGATTTCGGTGCCATTGGTGGACTCCAAGCTATGCGTGGCTTCCTTGAAGTCTTTGGACACCCTGATCCCTCGGTTCCACTTGGCTACAATCTCTCGCCCACACGCCAGCAGCTCATCTCATCGCTCATGATCTTGGGTGCATTCTTGAGTTCAGGCAGCGCGGGTATCTTCGCAGCATATCTTGGACGGAGGCATTGCTTGTGGTTGGCGAGCTTGCTGTGCTGTGTGAGCAATGTGGTCATGATGACTACAACAAGTATTGGTGGACTCTACGCCGGCCGCTTCCTCATCGGTCTTGCGAATGGGTGGTACATGACCTTTTCGCAACTATACATTCAG > 667 LEMA_P081680.1 NA hypothetical_protein CBX98929.1 NA MVLRFDSLVRSVDALVFMWLEQGTFLNLTFSSLSPSAKIPTATSTSWLYRSTITSIETSFWPTIYNERPAAQAAPQRTTEYLPASLVVYITLDTRFIAGVIDLGATPVPAVPFSRTARGEGHVAERVESASAHYVTDDTNTAIDNERNMTVRQSLRFWWKAIVFSFVISLCVVMEGYDTSLMNKFFAFTPFKNRFGDQVDADGIPLVSSRWQTIILNGTQVGCILGLIINGYITEWIGYKKTMIGSMVFMTGAIFIPFFSTSLEMFLVGGIIQGLPWGVFQTLAISYAADLCPIHLRGYMTSWINMCWVIGGLLSTGILTGLMKNNSQWGYRIPFALQWVWPIPIILATLLAPESPWWLVRQGRIEEAKAAIRKITTPTPGVQFDVDSHVEMMVVTNQYEKEVGAGTNYWHLFRGSDLHRTEVSAMAFVTQALVGTTFMGFGVQFFLGVGLKQEDSFYLTVGQDCLGLIGCFIAWWIMTRFGRRPIYLTGLCAIFLILLIVGFLGLAPPTNESAGLAGGIFIVLMIFCFQLSLGPICYSLAAEIPSSRLRVKTVALSRASYNSIVFVTNTIMPKMVGRNDWNWGAKGGFFWAGIAALFIVWGYFRLPEPKGFTYSELDLLFEHRVSARKFTRERVEVLRPALGGGVGKLDEKESIERVGDGA bitunicate_ascomycetes Leptosphaeria_maculans_JN3 Leptosphaeria_maculans_JN3 FP929134 1360860..1360932 Rouxel,T.,_Grandaubert,J.,_Hane,J.K.,_Hoede,C.,_van_de_Wouw,A.P.,_Couloux,A.,_Dominguez,V.,_Anthouard,V.,_Bally,P.,_Bourras,S.,_Cozijnsen,A.J.,_Ciuffetti,L.M.,_Degrave,A.,_Dilmaghani,A.,_Duret,L.,_Fudal,I.,_Goodwin,S.B.,_Gout,L.,_Glaser,N.,_Linglin,J.,_Kema,G.H.,_Lapalu,N.,_Lawrence,C.B.,_May,K.,_Meyer,M.,_Ollivier,B.,_Poulain,J.,_Schoch,C.L.,_Simon,A.,_Spatafora,J.W.,_Stachowiak,A.,_Turgeon,B.G.,_Tyler,B.M.,_Vincent,D.,_Weissenbach,J.,_Amselem,J.,_Quesneville,H.,_Oliver,R.P.,_Wincker,P.,_Balesdent,M.H._and_Howlett,B.J. NA 0:73 NA NA 10-OCT-2011 Leptosphaeria_maculans_JN3_lm_SuperContig_13_v2_genomic_supercontig,_whole_genome,_isolate_v23.1.3. NA Leptosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Leptosphaeria_maculans_E5A5N1_LEPMC.gb Leptosphaeria 312218538 Nat_Commun_2,_202_(2011) fungi FP929134 NA NA Pleosporales sac_fungi 21326234 73 NA genomic_DNA NA NA NA blackleg_of_rapeseed_fungus NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 985895 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Leptosphaeriaceae,_Leptosphaeria,_Leptosphaeria_maculans_complex Effector_diversification_within_compartments_of_the_Leptosphaeria_maculans_genome_affected_by_Repeat-Induced_Point_mutations NA FP929134.1 ATGGTGTTGAGGTTCGACTCGCTAGTCCGCTCCGTGGACGCACTAGTCTTTATGTGGCTAGAACAGGGCACGT > 668 LEMA_P075890.1 NA similar_to_glucose_transporter CBY00000.1 NA MYTCLSNRRHTAPSPAPFAVYAMNRDSERAVRLSAAHHVYAICGFAAIGGALFGFDISSMSGVLGTQAYSRYFDAPSGTRQGGITAAMPAGSLVGALASSFLADRLSRRNAIQIAALIWIIGAIFQAAANGIPLLCVGRVVGGFAIGICSAIVPVYQSEIAPKEIRGRVVSLQQWAITWGILIQYFIQYGCSFTGGGSKNPNQGTAAFRIPWGIQAVPGAILFIGMFFFPRSPRWLASKDRWEEALETLAHLHGGGDVNHPKVLAEYKEIEEALRFEREEAETSFAALIKPRIVKRVILGMSIQMWSQLCGMNIMMYYIVFIMRGAGIADELLTASIQYIINVAMTLPAILYLDRFGRRPALLVGSFLMAVWLFTTGALQASYGNPNPDPTDKDISWVVPREHSAVSKGIVACSYLFVATFATTWGPTSWTYPSEIFPAKVRAKAVSLATAANWTWNCILAFAVPPLLWSINWQMYMIFGTFNAAAFIHMFLTAPETKGRTLEEMDDVFDSGLPAWKAGKIASRFDQITRDIEKGDLKVAGRAHEEVAVEPKA bitunicate_ascomycetes Leptosphaeria_maculans_JN3 Leptosphaeria_maculans_JN3 FP929137 1129675..1129905 Rouxel,T.,_Grandaubert,J.,_Hane,J.K.,_Hoede,C.,_van_de_Wouw,A.P.,_Couloux,A.,_Dominguez,V.,_Anthouard,V.,_Bally,P.,_Bourras,S.,_Cozijnsen,A.J.,_Ciuffetti,L.M.,_Degrave,A.,_Dilmaghani,A.,_Duret,L.,_Fudal,I.,_Goodwin,S.B.,_Gout,L.,_Glaser,N.,_Linglin,J.,_Kema,G.H.,_Lapalu,N.,_Lawrence,C.B.,_May,K.,_Meyer,M.,_Ollivier,B.,_Poulain,J.,_Schoch,C.L.,_Simon,A.,_Spatafora,J.W.,_Stachowiak,A.,_Turgeon,B.G.,_Tyler,B.M.,_Vincent,D.,_Weissenbach,J.,_Amselem,J.,_Quesneville,H.,_Oliver,R.P.,_Wincker,P.,_Balesdent,M.H._and_Howlett,B.J. NA 0:>231 NA NA 10-OCT-2011 Leptosphaeria_maculans_JN3_lm_SuperContig_10_v2_genomic_supercontig,_whole_genome,_isolate_v23.1.3. NA Leptosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Leptosphaeria_maculans_E5A8Q5_LEPMC.gb Leptosphaeria 312219757 Nat_Commun_2,_202_(2011) fungi FP929137 NA NA Pleosporales sac_fungi 21326234 231 NA genomic_DNA NA NA NA blackleg_of_rapeseed_fungus NA complement Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 985895 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Leptosphaeriaceae,_Leptosphaeria,_Leptosphaeria_maculans_complex Effector_diversification_within_compartments_of_the_Leptosphaeria_maculans_genome_affected_by_Repeat-Induced_Point_mutations NA FP929137.1 CTAAGCCTTGGGCTCAACAGCAACTTCCTCATGGGCCCTTCCGGCAACCTTGAGGTCGCCCTTCTCGATATCGCGAGTGATCTGGTCGAAACGTGAGGCAATCTTGCCGGCCTTCCAGGCAGGGAGTCCACTGTCGAAGACATCATCCATCTCCTCGAGTGTCCTGCCCTTGGTCTCGGGTGCAGTCAAGAACATGTGGATAAAGGCAGCGGCATTGAAAGTCCCGAAAAT > 669 LEMA_P012130.1 NA hypothetical_protein CBY02426.1 NA MLGCDLDPARTGAGTIRELDKTSSTPKRECCGGDKRSWGEVMEAGALGVRWTPCTDEIGQWHTLTESGLGRRHSAWRGPLITQSQPHPDGIIHENSRARLALGAVPCSVVQDVLCCQTPVCSTGIATIQPCGWSWVCLKADFWLKNKKGEMLLTSLFLVTHGRALVPCLLRENTSYQHYISTDIDNPFLTFDDSREDPTTGRTELEAYVWQFATEAGLADRYELLRFGARLARDKHEAMTRYAGEITDPEKMLLQTEKNKQSGFWRQSKFFRATIITASLGGMIQGWTQSANNGTAYGMPDEFGLCFRGDDCSSSDLWTFGMLNAIPLLSAGLFGTVLADPLQENFLGRRGSIMVSCGITIASTIGASVTHTVGQLAACRAINGIALGAKASITPIYSAELSPEHIRGAILANWQLADAAGIFFGFLANLLIVIYVEDKFKSWRILTNTVLIPTVPLLVMIYLMPESPRYLMKHGRYRKALEAFEQVQTTSLLASRDFIYAHAQLDFESRLMRGSAKEQGNLAQRIDISTQSLSGGLADSQLISPNDSVSQGQSIAAPTNDINLQLPLSSRGTVQSSALQTTQSQEPTIELRDLPTDLRHRTSDVSSLDIDWIQRARKKRNPYSYHIGVTGYFKRLVQLITKQRCRRALLSASISMISQQMTGVNTIAFLGTVVWENSLNVSSGPEDTNIGAQTGAIVGLTKDTAQTAAIIGLAFGAANYVFGLPAYWLSDVIGRSIMLALGLPNMAWSMLVFAFLFKIEGEAKVPLVSVFAIIFTAFYAPTAGTSPFSISAEVFPLVSREVGMAVSVAVNLLGAGILVLVFPFLMNSINITGALSIFAGLNLVAFVLVYLFVPETKMRTLEELQYTFDLPTRWHVEYRAGYIRKHVVNNWWRYVTRKQVAPPIPFYEWARITYDQKEGGN bitunicate_ascomycetes Leptosphaeria_maculans_JN3 Leptosphaeria_maculans_JN3 FP929139 4027382..4027677 Rouxel,T.,_Grandaubert,J.,_Hane,J.K.,_Hoede,C.,_van_de_Wouw,A.P.,_Couloux,A.,_Dominguez,V.,_Anthouard,V.,_Bally,P.,_Bourras,S.,_Cozijnsen,A.J.,_Ciuffetti,L.M.,_Degrave,A.,_Dilmaghani,A.,_Duret,L.,_Fudal,I.,_Goodwin,S.B.,_Gout,L.,_Glaser,N.,_Linglin,J.,_Kema,G.H.,_Lapalu,N.,_Lawrence,C.B.,_May,K.,_Meyer,M.,_Ollivier,B.,_Poulain,J.,_Schoch,C.L.,_Simon,A.,_Spatafora,J.W.,_Stachowiak,A.,_Turgeon,B.G.,_Tyler,B.M.,_Vincent,D.,_Weissenbach,J.,_Amselem,J.,_Quesneville,H.,_Oliver,R.P.,_Wincker,P.,_Balesdent,M.H._and_Howlett,B.J. NA 0:>296 NA NA 10-OCT-2011 Leptosphaeria_maculans_JN3_lm_SuperContig_0_v2_genomic_supercontig,_whole_genome,_isolate_v23.1.3. NA Leptosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Leptosphaeria_maculans_E5AD74_LEPMC.gb Leptosphaeria 312221273 Nat_Commun_2,_202_(2011) fungi FP929139 NA NA Pleosporales sac_fungi 21326234 296 NA genomic_DNA NA NA NA blackleg_of_rapeseed_fungus NA complement Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 985895 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Leptosphaeriaceae,_Leptosphaeria,_Leptosphaeria_maculans_complex Effector_diversification_within_compartments_of_the_Leptosphaeria_maculans_genome_affected_by_Repeat-Induced_Point_mutations NA FP929139.1 CTAATTGCCTCCCTCCTTCTGATCGTAAGTAATCCGCGCCCATTCATAAAATGGGATCGGCGGCGCCACCTGCTTCCGCGTCACATATCGCCACCAATTATTCACCACATGTTTTCGGATATATCCAGCTCGATATTCAACGTGCCATCTTGTAGGCAGGTCAAACGTGTACTGAAGCTCTTCCAAGGTTCGCATCTTCGTCTCCGGTACAAAGAGGTATACCAACACAAACGCGACGAGATTCAGTCCGGCGAAGATCGACAGCGCGCCCGTGATGTTGATACTGTTCATCAAGA > 670 LEMA_P046750.1 NA hypothetical_protein CBX91969.1 NA MTEDDAAAERLITHSRDVPSSPRDEYADEDGEEYAGIDVDESSLVSPGAFIWGLTLCAGVSGLLFGYDTGVISSTLVSIGSDLSSHPLTTLDKSLITSCTSFFALLASPCTGLLADAYGRKTVILIADVLFVVGALMQAWTTTVAAQASLCRCISAN bitunicate_ascomycetes Leptosphaeria_maculans_JN3 Leptosphaeria_maculans_JN3 FP929083 539811..539848 Rouxel,T.,_Grandaubert,J.,_Hane,J.K.,_Hoede,C.,_van_de_Wouw,A.P.,_Couloux,A.,_Dominguez,V.,_Anthouard,V.,_Bally,P.,_Bourras,S.,_Cozijnsen,A.J.,_Ciuffetti,L.M.,_Degrave,A.,_Dilmaghani,A.,_Duret,L.,_Fudal,I.,_Goodwin,S.B.,_Gout,L.,_Glaser,N.,_Linglin,J.,_Kema,G.H.,_Lapalu,N.,_Lawrence,C.B.,_May,K.,_Meyer,M.,_Ollivier,B.,_Poulain,J.,_Schoch,C.L.,_Simon,A.,_Spatafora,J.W.,_Stachowiak,A.,_Turgeon,B.G.,_Tyler,B.M.,_Vincent,D.,_Weissenbach,J.,_Amselem,J.,_Quesneville,H.,_Oliver,R.P.,_Wincker,P.,_Balesdent,M.H._and_Howlett,B.J. NA 0:>38 NA NA 10-OCT-2011 Leptosphaeria_maculans_JN3_lm_SuperContig_6_v2_genomic_supercontig,_whole_genome,_isolate_v23.1.3. NA Leptosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Leptosphaeria_maculans_E5R4K1_LEPMC.gb Leptosphaeria 312211696 Nat_Commun_2,_202_(2011) fungi FP929083 NA NA Pleosporales sac_fungi 21326234 38 NA genomic_DNA NA NA NA blackleg_of_rapeseed_fungus NA complement Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 985895 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Leptosphaeriaceae,_Leptosphaeria,_Leptosphaeria_maculans_complex Effector_diversification_within_compartments_of_the_Leptosphaeria_maculans_genome_affected_by_Repeat-Induced_Point_mutations NA FP929083.1 TCAATTCGCTGATATACAGCGGCACAACGAAGCTTGCG > 671 NA maltose_permease MP1 AAS92556.1 NA MASTMKGEGHVAERVESASAHYVTDDTNTAIDNERNMTVRQSLRFWWKAIVFSFVISLCVVMEGYDTSLMNKFFAFTPFKNRFGDQVDADGIPLVSSRWQTIILNGTQVGCILGLIINGYITEWIGYKKTMIGSMVFMTGAILIPFFSTSLEMFLVGGIIQGLPWGVFQTLAISYAADLCPIHLRGYMTSWINMCWVIGGLLSTGILTGLMKNNSQWGYRIPFALQWVWPIPIILATLLAPESPWWLVRQGRNGRSQSRDPQNHHAYSGVQFDVDSHVEMMVVTNQYEKEVGAGTNYWHLFRGSDLHRTEVSAMAFVTQALVGTTFMGFGVQFFLGVGLKQEDSFYLTVGQDCLGLIGCFIAWWIMTRFGRRPIYLTGLCAIFLILLIVGFLGLAPPTNESAGLAGGIFIVLMIFCFQLSLGPICYSLAAEIPSSRLRVKTVALSRASYNSIVFVTNTIMPKMVGRNDWNWGAKGGFFWAGIAALFIVWGYFRLPEPKGFTYSELDLLFEHRVSARKFTRERVEVLRPALGGGVGKLDEKESIERVGDGA bitunicate_ascomycetes Leptosphaeria_maculans Leptosphaeria_maculans_(blackleg_of_rapeseed_fungus) AY553235 63315..63713 Gardiner,D.M.,_Cozijnsen,A.J.,_Wilson,L.M.,_Pedras,M.S._and_Howlett,B.J. NA 0:>399 NA NA 16-NOV-2004 Leptosphaeria_maculans_HDX1_(HDX1),_PKS1_(PKS1),_and_UVI-1h_(UVI-1h)_genes,_complete_cds;_sirodesmin_biosynthetic_gene_cluster,_complete_sequence;_MP1_(MP1),_and_ZnF3_(ZnF3)_genes,_complete_cds. NA Leptosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Leptosphaeria_maculans_Q6Q872_LEPMC.gb Leptosphaeria 46403045 Mol._Microbiol._53_(5),_1307-1318_(2004) fungi AY553235 MP1 NA Pleosporales sac_fungi 15387811 399 NA genomic_DNA NA NA NA blackleg_of_rapeseed_fungus NA complement Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 5022 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Leptosphaeriaceae,_Leptosphaeria,_Leptosphaeria_maculans_complex The_sirodesmin_biosynthetic_gene_cluster_of_the_plant_pathogenic_fungus_Leptosphaeria_maculans NA AY553235.1 CTACGCCCCATCCCCGACCCTCTCAATCGACTCCTTCTCATCCAACTTCCCCACCCCGCCACCCAACGCTGGCCTCAGAACCTCCACCCTCTCCCTCGTAAACTTCCGCGCAGAAACTCTGTGCTCAAACAGCAAATCCAGCTCAGAGTACGTAAACCCCTTCGGCTCCGGGAGGCGAAAGTAGCCCCACACAATGAAAAGGGCGGCAATACCGGCCCAGAAAAATCCGCCTTTTGCACCCCAGTTCCAGTCGTTGCGGCCGACCATTTTCGGCATAATGGTGTTTGTTACAAAGACAATGGAATTGTAAGAGGCGCGAGAGAGGGCCACAGTTTTCACGCGTAGGCGGGAAGAGGGGATTTCAGCGGCTAGCGAGTAGCAAATTGGACCCAGTGAAAG > 672 Lcho_0240 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_ajs:Ajs_3752_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_001789280.1 11 MSAHPTPDRAPRTPMAREDIQLVFASSFGTVYEWYDFYLYGALAPIIAAQFFSGLDPSAGFIFALLAFAAGFIVRPFGALVFGRLGDMIGRKYTFLITILLMGLSTCVVGVLPSYADIGLAAPVMLIALRLLQGLAMGGEYGGAATYVAEHAPPDRRGFYTSWIQTTASLGLFMALVVILLLRQVLGDAAFADWGWRIPFLLSIVLLAVSVWVRLSMNESPAFQRLRETGRTSKAPIRESFGNWRNLRVVLLALFGLVAGQAVVWYTGQFYALFFLTGVLRVEPSTAQWLMVAALAIGTPFFVFFGALADRIGRKPIIMAGLALAAAGYFPMFEALTVAANPALAEAQANARIVVAADPATCSFQGSPIAREVDFASPCDLAKRFLTEQGASYDNRALPRGAATVVRVGSTEITPPRGGLAAGGHGFDDRSVRAIAAFRAEVRQALLAAGYPERADPARMDKVGIVVILSAFMLLVTMVYGPIAAMLVEMFPTRIRYTSMSLPYHIGNGWFGGLMPSIAFAIVAHSGNMYDGLWYPVLIAAGSCAIGLLLVRETRGRDIYAQD beta_subgroup Leptothrix_cholodnii_SP-6 Leptothrix_cholodnii_SP-6 NC_010524 257542..259233 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Kuske,C.R.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Emerson,D._and_Richardson,P. NA 0:1692 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001013.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4024183Source_DNA_and_bacteria_available_from_David_Emerson(demerson@bigelow.org)Contacts:_David_Emerson_(demerson@bigelow.org)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Leptothrix_cholodnii_SP-6_chromosome,_complete_genome. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Leptothrix_cholodnii_B1Y7R7_LEPCP.gb Leptothrix_Kutzing_1843 171056692 Unpublished NA NC_010524 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1692 NA genomic_DNA NA SP-6 NA Leptothrix_sp._OUMS1 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 395495 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Leptothrix Complete_sequence_of_Leptothrix_cholodnii_SP-6 NA NC_010524.1 ATGTCCGCACACCCGACGCCGGATCGGGCGCCCCGGACACCGATGGCCCGGGAAGACATCCAGCTCGTCTTTGCGTCTTCCTTCGGCACGGTGTACGAGTGGTACGACTTCTACCTCTACGGCGCGCTCGCGCCCATCATCGCGGCGCAGTTCTTCAGCGGGCTCGATCCGTCGGCCGGCTTCATCTTCGCGCTGCTCGCCTTTGCCGCCGGCTTCATCGTGCGCCCGTTCGGCGCGCTGGTGTTCGGTCGCCTGGGCGACATGATCGGGCGCAAGTACACCTTCCTGATCACCATCTTGCTGATGGGCCTGTCGACCTGCGTGGTCGGCGTGCTGCCGAGCTACGCCGACATCGGCCTGGCCGCGCCGGTGATGCTGATCGCGCTGCGGCTGCTGCAGGGCCTGGCGATGGGCGGCGAGTACGGCGGCGCGGCGACCTACGTGGCCGAACACGCGCCGCCCGACCGGCGCGGTTTCTACACCTCGTGGATCCAGACCACCGCCTCGCTCGGCCTGTTCATGGCGCTGGTGGTGATCCTGCTGCTGCGCCAGGTGCTCGGCGATGCCGCCTTCGCCGACTGGGGCTGGCGCATCCCGTTCCTGCTGTCGATCGTGCTGCTGGCGGTGAGCGTGTGGGTGCGGCTGTCGATGAACGAATCGCCGGCTTTCCAGCGCCTGCGTGAAACCGGCCGCACCTCGAAGGCGCCGATCCGCGAGTCGTTCGGCAACTGGCGCAACCTGCGGGTCGTGCTGCTGGCGCTGTTCGGGCTGGTGGCCGGGCAGGCGGTGGTCTGGTACACGGGCCAGTTCTACGCGCTGTTCTTCCTGACCGGCGTGCTGCGGGTCGAGCCGTCGACCGCGCAGTGGCTGATGGTCGCGGCGCTGGCGATCGGCACGCCGTTCTTCGTGTTCTTCGGCGCGCTGGCGGATCGCATCGGCCGCAAGCCGATCATCATGGCCGGCCTGGCGCTGGCGGCGGCGGGCTACTTCCCGATGTTCGAGGCGCTGACGGTGGCGGCCAACCCGGCGCTGGCCGAGGCGCAGGCGAACGCGCGCATCGTGGTGGCAGCCGACCCGGCGACCTGCTCGTTCCAGGGCAGTCCGATCGCGCGTGAGGTCGATTTCGCCTCGCCCTGCGATCTGGCCAAGCGCTTCCTGACCGAACAGGGCGCCAGCTACGACAACCGCGCGCTGCCGCGCGGCGCCGCCACCGTGGTGCGGGTCGGCAGCACCGAGATCACGCCGCCGCGCGGGGGGCTCGCGGCCGGCGGCCACGGCTTCGACGACCGCAGCGTGCGCGCCATCGCGGCCTTCCGCGCCGAGGTGCGCCAGGCTCTGCTGGCGGCGGGCTACCCGGAGCGGGCCGACCCGGCGCGCATGGACAAGGTCGGCATCGTCGTGATCCTGAGCGCCTTCATGCTGCTGGTGACGATGGTCTACGGCCCGATCGCGGCGATGCTGGTGGAGATGTTCCCCACCCGCATCCGCTACACCTCGATGAGCCTGCCGTATCACATCGGCAACGGCTGGTTCGGCGGCCTGATGCCGTCGATCGCGTTCGCCATCGTCGCCCACAGCGGCAACATGTACGACGGCCTCTGGTACCCGGTGCTGATCGCCGCCGGCTCCTGCGCGATCGGCCTGCTGCTGGTGCGCGAGACGCGCGGGCGCGACATCTACGCGCAGGACTGA > 673 LEUM_0869 NA D-xylose_proton-symporter YP_818350.1 11 MKTKSKKVKLNFLHYCVYVISLGGFLFGYDTGVINGALAFMSRPDQLNLTPTLQGVVSSSLVIGACFGALGCGRVADKIGRRKTLRIIAIVFTIATVLCAVAMNFWLMSLFRFVLGLAVGAASSLSPMYLAEISPENLRSANVNKNAIFIVLGQLCAFIVNAILGNIWGHWGPIWRVMVISGAVPSIILWVNSFRISGSPQWLLLKHRFNRARKIFRRLGFKNTNQLIKSQSDQSSEQNDNEFNWSIALKNKKLFYLLVTGIVIALIQQISGVNTVMYYGTILLEKVGMGESGSLYANVLIGVVSVIASIFGTRMIEHANHHRMLIIGLIGNVVFMALLGTIMKSSVFSQGITNALVLVSLTLFLANHQGIVSPVTWLLLAEMFPGKVKAQFMSVATATTWITNFVISLIYPQLVAILGTALVFFVFAMSNGLSIVLASLFVNSKKMAKAYDTASLS Bacillus/Lactobacillus/Streptococcus_group Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 NC_008531 860978..862351 Makarova,K.,_Slesarev,A.,_Wolf,Y.,_Sorokin,A.,_Mirkin,B.,_Koonin,E.,_Pavlov,A.,_Pavlova,N.,_Karamychev,V.,_Polouchine,N.,_Shakhova,V.,_Grigoriev,I.,_Lou,Y.,_Rohksar,D.,_Lucas,S.,_Huang,K.,_Goodstein,D.M.,_Hawkins,T.,_Plengvidhya,V.,_Welker,D.,_Hughes,J.,_Goh,Y.,_Benson,A.,_Baldwin,K.,_Lee,J.H.,_Diaz-Muniz,I.,_Dosti,B.,_Smeianov,V.,_Wechter,W.,_Barabote,R.,_Lorca,G.,_Altermann,E.,_Barrangou,R.,_Ganesan,B.,_Xie,Y.,_Rawsthorne,H.,_Tamir,D.,_Parker,C.,_Breidt,F.,_Broadbent,J.,_Hutkins,R.,_OSullivan,D.,_Steele,J.,_Unlu,G.,_Saier,M.,_Klaenhammer,T.,_Richardson,P.,_Kozyavkin,S.,_Weimer,B._and_Mills,D. NA 0:1374 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000414.URL_--_http://www.jgi.doe.govJGI_Project_ID:_2662187Source_DNA_and_bacteria_available_from_Fred_Breidt(breidt@ncsu.edu)Bacteria_also_available_from_ATCC:_ATCC_8293Contacts:_Fred_Breidt_(breidt@ncsu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Annotation_done_by_Kira_Makarova_and_Eugene_KooninFinishing_done_by_Fidelity_Systems_Inc._(Gaithersburg)URL_--_http://www.fidelitysystems.com_Project_Informationavailable_at:_http://genome.jgi-psf.org/mic_home.htmlThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 19-OCT-2011 Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293,_complete_genome. NA Leuconostocaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Leuconostoc_mesenteroides_Q03XU5_LEUMM.gb Leuconostoc_van_Tieghem_1878 116617174 Proc._Natl._Acad._Sci._U.S.A._103_(42),_15611-15616_(2006) NA NC_008531 NA NA Lactobacillales low_GC_Gram+ 17030793 1374 NA genomic_DNA NA ATCC_8293 NA Leuconostoc_mesenteroides_(Tsenkovskii_1878)_van_Tieghem_1878 NA forward NA NA NA NA NA NA Leuconostoc_mesenteroides_subsp._mesenteroides_(Tsenkovskii_1878)_van_Tieghem_1878 NA NA NA prokaryotes NA 203120 Bacteria,_Firmicutes,_Lactobacillales,_Leuconostoc Comparative_genomics_of_the_lactic_acid_bacteria NA NC_008531.1 ATGAAAACTAAATCAAAAAAAGTTAAGCTAAATTTTCTGCATTACTGTGTTTACGTTATATCATTAGGCGGATTTCTATTTGGCTATGATACTGGTGTGATTAACGGTGCACTGGCATTCATGAGCCGTCCGGACCAACTGAATTTGACACCGACCTTACAAGGCGTTGTGTCCAGTTCATTGGTTATTGGTGCTTGTTTTGGGGCACTGGGATGTGGTCGAGTTGCTGATAAAATTGGTCGCCGTAAAACGCTACGAATCATTGCAATCGTATTTACAATAGCTACGGTGCTTTGCGCTGTTGCCATGAACTTTTGGCTTATGTCACTTTTTCGATTTGTATTAGGTTTAGCAGTTGGTGCTGCATCAAGTTTGTCACCAATGTATTTAGCAGAAATTTCACCGGAAAATTTAAGAAGCGCCAATGTCAACAAAAACGCTATTTTTATTGTACTTGGTCAGTTATGTGCTTTCATTGTAAATGCAATATTAGGCAACATCTGGGGTCATTGGGGTCCAATTTGGCGTGTTATGGTGATTTCTGGTGCGGTTCCATCAATTATTCTGTGGGTAAACTCGTTTCGTATCAGCGGTAGTCCGCAATGGTTACTCTTAAAGCATCGTTTTAACCGAGCTCGAAAAATATTTCGTCGATTGGGATTTAAAAATACTAACCAGCTTATCAAATCTCAAAGTGATCAATCTAGTGAGCAAAACGATAATGAATTTAATTGGTCAATAGCATTAAAAAACAAAAAATTGTTTTATTTGTTAGTGACAGGAATTGTGATTGCTCTGATTCAGCAAATCTCAGGTGTAAACACCGTGATGTATTACGGTACAATTTTACTTGAAAAAGTTGGTATGGGTGAAAGTGGCTCCTTGTACGCCAATGTGTTAATTGGTGTCGTTTCTGTTATTGCTAGTATATTTGGTACTCGAATGATAGAACATGCCAATCATCATCGCATGTTGATTATTGGTCTGATTGGTAACGTTGTTTTTATGGCGCTACTTGGAACTATTATGAAATCTAGTGTTTTTTCTCAAGGAATAACTAATGCTTTGGTGCTTGTTAGTTTAACGTTGTTTTTGGCTAATCATCAAGGTATTGTAAGTCCTGTTACATGGCTCTTGTTAGCCGAAATGTTTCCTGGAAAGGTTAAGGCGCAATTTATGTCCGTGGCTACAGCAACAACTTGGATAACCAACTTCGTCATTAGTTTAATCTATCCCCAGTTAGTTGCTATTCTTGGAACAGCATTGGTATTTTTCGTTTTTGCTATGTCAAATGGATTAAGTATTGTGTTAGCAAGTCTGTTTGTCAATAGTAAAAAGATGGCAAAGGCTTATGATACAGCTAGTCTATCATAG > 674 LEUM_0853 NA D-xylose_proton-symporter YP_818334.1 11 MENGSTKRIASSFIYFFGAFGGILFGYDIGVMTGALPFLQKDWHLTDAGTIGWITSTLMLGAILGGALAGQLSDRLGRRRMILASSFIFAVGAIMAGVSPNNGVVWLLIARFLLGLAVGAASALVPSYMSEMAPAKNRGRLSGLNQLMIVSGMLLSYIVDYLLQGLPHTIAWRLMLGLAAVPAIILFVGVLRLPESPRFLVKTHKLAEARQVLTYIRTASEVDPELEDIQNTVAIESGAQKNITLSTLFSSKYRYLVTAGIGVAAFQQFMGANAIFYYIPLIVEKASGQAASSALLWPIVQGVILVLGALLYMVIADKFKRRTLLMVGGTVMALSFLMPSALNALVGADKFPPMLIVVFLSIFVAFYSFTWAPLTWVLVGEVFPLAIRGRASGLASSFNWLGSFAVGLLFPIMTAAMPQATVFAIFGVISIIAVLFIKFAVPETHGRTLEEIEAQGTNH Bacillus/Lactobacillus/Streptococcus_group Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 NC_008531 841942..843321 Makarova,K.,_Slesarev,A.,_Wolf,Y.,_Sorokin,A.,_Mirkin,B.,_Koonin,E.,_Pavlov,A.,_Pavlova,N.,_Karamychev,V.,_Polouchine,N.,_Shakhova,V.,_Grigoriev,I.,_Lou,Y.,_Rohksar,D.,_Lucas,S.,_Huang,K.,_Goodstein,D.M.,_Hawkins,T.,_Plengvidhya,V.,_Welker,D.,_Hughes,J.,_Goh,Y.,_Benson,A.,_Baldwin,K.,_Lee,J.H.,_Diaz-Muniz,I.,_Dosti,B.,_Smeianov,V.,_Wechter,W.,_Barabote,R.,_Lorca,G.,_Altermann,E.,_Barrangou,R.,_Ganesan,B.,_Xie,Y.,_Rawsthorne,H.,_Tamir,D.,_Parker,C.,_Breidt,F.,_Broadbent,J.,_Hutkins,R.,_OSullivan,D.,_Steele,J.,_Unlu,G.,_Saier,M.,_Klaenhammer,T.,_Richardson,P.,_Kozyavkin,S.,_Weimer,B._and_Mills,D. NA 0:1380 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000414.URL_--_http://www.jgi.doe.govJGI_Project_ID:_2662187Source_DNA_and_bacteria_available_from_Fred_Breidt(breidt@ncsu.edu)Bacteria_also_available_from_ATCC:_ATCC_8293Contacts:_Fred_Breidt_(breidt@ncsu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Annotation_done_by_Kira_Makarova_and_Eugene_KooninFinishing_done_by_Fidelity_Systems_Inc._(Gaithersburg)URL_--_http://www.fidelitysystems.com_Project_Informationavailable_at:_http://genome.jgi-psf.org/mic_home.htmlThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 19-OCT-2011 Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293,_complete_genome. NA Leuconostocaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Leuconostoc_mesenteroides_Q03XW1_LEUMM.gb Leuconostoc_van_Tieghem_1878 116617174 Proc._Natl._Acad._Sci._U.S.A._103_(42),_15611-15616_(2006) NA NC_008531 NA NA Lactobacillales low_GC_Gram+ 17030793 1380 NA genomic_DNA NA ATCC_8293 NA Leuconostoc_mesenteroides_(Tsenkovskii_1878)_van_Tieghem_1878 NA forward NA NA NA NA NA NA Leuconostoc_mesenteroides_subsp._mesenteroides_(Tsenkovskii_1878)_van_Tieghem_1878 NA NA NA prokaryotes NA 203120 Bacteria,_Firmicutes,_Lactobacillales,_Leuconostoc Comparative_genomics_of_the_lactic_acid_bacteria NA NC_008531.1 ATGGAAAATGGATCCACAAAAAGAATCGCCAGTTCATTTATATATTTCTTTGGTGCATTTGGCGGCATTTTATTTGGTTACGATATTGGCGTTATGACTGGCGCTTTACCATTTTTACAAAAAGACTGGCATCTAACAGATGCAGGAACTATCGGTTGGATCACTTCAACCCTTATGTTAGGAGCAATTCTTGGCGGCGCATTAGCTGGACAACTGTCAGATAGATTAGGTCGTCGTCGAATGATACTGGCTTCATCATTTATCTTTGCAGTTGGTGCAATTATGGCTGGTGTTTCTCCAAATAATGGGGTGGTGTGGTTATTAATTGCTCGCTTCCTCTTGGGCTTAGCAGTTGGTGCAGCTTCGGCATTAGTACCTTCATATATGTCCGAAATGGCACCTGCCAAAAATAGAGGTCGGCTATCCGGGTTGAATCAGCTGATGATTGTTTCTGGAATGCTTTTATCATATATCGTTGACTATTTGCTACAAGGCTTGCCGCATACGATTGCTTGGCGATTAATGCTTGGATTAGCAGCTGTGCCGGCAATCATACTTTTCGTTGGTGTTCTTCGTTTACCTGAGTCACCACGATTTTTAGTGAAAACGCACAAATTAGCCGAAGCACGACAAGTGTTAACTTATATTCGTACTGCCAGTGAAGTGGATCCAGAGCTAGAAGACATACAAAATACTGTAGCAATTGAGTCCGGTGCGCAAAAAAATATTACTTTAAGTACATTATTTTCCAGTAAGTATCGATATTTAGTCACCGCGGGTATTGGTGTGGCAGCTTTCCAACAGTTTATGGGTGCCAACGCAATATTTTACTACATTCCGTTGATTGTTGAAAAAGCAAGTGGACAAGCTGCGTCAAGCGCATTACTATGGCCAATCGTACAAGGTGTGATACTTGTCCTAGGCGCGTTGTTGTATATGGTAATAGCAGACAAGTTCAAACGGCGTACGCTACTGATGGTCGGTGGAACCGTAATGGCATTGTCATTCTTAATGCCATCAGCACTCAATGCATTGGTGGGTGCAGACAAGTTTCCACCTATGCTGATAGTGGTATTTCTGTCAATATTTGTTGCTTTCTATTCATTCACTTGGGCACCACTCACCTGGGTATTAGTTGGTGAGGTATTTCCGCTAGCAATTCGCGGTCGTGCTAGTGGATTGGCATCGTCATTTAATTGGCTTGGTTCCTTTGCTGTAGGGTTATTATTTCCTATCATGACGGCTGCCATGCCGCAAGCAACGGTATTTGCTATCTTTGGTGTAATTTCAATCATCGCCGTCTTATTTATTAAGTTTGCCGTACCCGAAACTCATGGCAGAACGCTTGAAGAAATAGAAGCGCAAGGAACAAACCATTAA > 675 Lm4b_02715 NA drug-efflux_transporter YP_002759399.1 11 MENWKKNLYVVWVGCFLTGTGLNLIMPFLPLYIEELGVHNPDQVSMWSGIALSSTFLVSAIMSPIWGKLADQKGRRIMLLRAALGMAIAMILMGLVSNVYQFVGLRLLMGIFSGYISTANALIATQVPRHRSGWALGALSTAAVSGVLIGPLIGGALSDTFGVRPVFYITGVLLLGSFFLTLFFVKEKFTPVEKKEMRSGKEVFLSLKNPGLIISLFITTMMIQIASNSVNPILTLYVRDLAGNAQNIAFISGMIASVPGVAALIAAPRLGRWGDRIGSERILLGALIGSMLLQIPMAFAQNPLQLGILRFLLGLTDGALLPAVQSLLTKNTPREVSGRIFGYNQSFQYIGNVIGPLVGSSVAAHFGYGDVFLVVAGFIFINVLISFYFNRKMHGEKGNHAN Bacillus/Lactobacillus/Streptococcus_group Listeria_monocytogenes_serotype_4b_str._CLIP_80459 Listeria_monocytogenes_serotype_4b_str._CLIP_80459 NC_012488 2786355..2787563 N,N. NA 0:1209 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_FM242711.COMPLETENESS:_full_length. NA 30-SEP-2011 Listeria_monocytogenes_Clip81459,_complete_genome. NA Listeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Listeria_monocytogenes_C1KZU6_LISMC.gb not_"Listerella"_Jahn_1906 226222639 Unpublished NA NC_012488 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1209 NA genomic_DNA NA Clip81459 NA Lysteria_monocytogenes NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 568819 Bacteria,_Firmicutes,_Bacillales,_Listeriaceae,_Listeria Variability_in_sequence,_expression_and_immune-evasion_in_pathogenic_Listeriae NA NC_012488.1 TCAGTTGGCATGATTTCCCTTCTCTCCATGCATTTTTCGGTTGAAATAAAAACTGATTAGTACATTGATAAAAATAAAGCCTGCAACTACGAGGAAGACATCTCCGTAACCAAAATGGGCGGCAACACTTGACCCAACAAGCGGTCCGATAACATTCCCAATGTATTGAAACGATTGATTATAACCAAAAATCCGACCTGAAACCTCGCGCGGTGTATTTTTTGTAAGCAATGATTGAACCGCTGGAAGCAAGGCGCCGTCTGTAAGCCCTAATAAGAAACGTAAAATCCCAAGTTGTAGTGGGTTTTGTGCGAAAGCCATTGGAATTTGGAGTAACATTGAACCTATGAGCGCACCTAACAATATTCGCTCCGAACCAATTCGGTCTCCCCATCTCCCAAGTCTCGGTGCCGCAATAAGTGCCGCAACCCCTGGAACAGATGCAATCATCCCACTAATAAAAGCGATGTTTTGCGCATTTCCTGCCAAATCACGCACGTATAATGTCAAAATCGGGTTCACTGAGTTGGACGCAATTTGAATCATCATTGTCGTAATAAATAAGGAAATAATCAAGCCCGGGTTTTTAAGCGACAAGAAAACTTCTTTCCCCGACCGCATTTCCTTTTTTTCTACTGGTGTAAATTTCTCTTTCACAAAGAACAGTGTGAGGAAAAAGCTACCTAAAAGAAGTACTCCTGTGATGTAAAACACTGGTCTGACGCCAAATGTATCAGACAGCGCTCCGCCAATTAACGGGCCAATTAGCACACCCGAAACCGCCGCCGTGGATAATGCCCCGAGAGCCCAGCCGCTACGATGACGAGGAACTTGTGTAGCAATAAGGGCATTTGCTGTTGAAATATATCCTGAAAAAATCCCCATTAATAAGCGCAAACCAACAAATTGGTATACATTGCTTACGAGTCCCATCAGAATCATCGCTATCGCCATACCTAGCGCAGCTCGCAAAAGCATAATTCTCCGCCCTTTTTGGTCAGCTAGTTTACCCCAAATTGGTGACATAATAGCTGATACTAAAAAGGTCGAACTGAGTGCAATCCCTGACCACATGCTTACTTGATCCGGATTATGCACTCCTAATTCTTCAATATACAATGGTAAAAATGGCATGATTAAATTTAATCCGGTTCCGGTTAGAAAGCACCCCACCCAGACAACATACAAATTCTTCTTCCAATTTTCCAT > 676 LELG_00740 NA hypothetical_protein XP_001528220.1 NA MKSSSFANVVLDGPLQDIHSSSDRSNHGTSHHHRNNELVELQNIKREGDEIDISVAQYEVDDGQDNVNEVKSENVDNPLTSETYGIASQNNQNTELRRRRQSTGHFSHRAVEDTTTSAMYGSELNPNTIPDGGKQANLVLFGSFMGLIADFGIPNSLGAIESYVSTNQLRGVSKADIGWVFSLHLCVMYLGGVFFGEVFDRYGARKSLIAGNNIDVCRDYFVLLNARELYQFLLSFAHIDCIGEHP Saccharomycetes Lodderomyces_elongisporus_NRRL_YB-4239 Lodderomyces_elongisporus_NRRL_YB-4239 XM_001528170 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_MacCallum,I.A.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Oleary,S.,_Kurtzman,C.,_Reedy,J._and_Heitman,J. NA 0:741 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001813685).COMPLETENESS:_incomplete_on_both_ends. NA 28-FEB-2008 Lodderomyces_elongisporus_NRRL_YB-4239_conserved_hypothetical_protein_(LELG_00740)_partial_mRNA. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lodderomyces_elongisporus_A5DTQ4_LODEL.gb Lodderomyces 149247622 Unpublished fungi XM_001528170 NA NA budding_yeasts sac_fungi NA 741 NA mRNA NA NRRL_YB-4239 NA Lodderomyces_elongisporus NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 379508 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Lodderomyces The_genome_sequence_of_Lodderomyces_elongisporus NA XM_001528170.1 ATGAAATCTTCATCATTTGCCAATGTCGTTCTGGATGGCCCACTGCAAGACATCCATTCTTCATCGGACAGAAGCAATCACGGTACGAGTCATCATCATAGGAATAATGAACTAGTTGAATTACAAAACATCAAAAGAGAAGGTGACGAGATAGATATATCAGTGGCACAGTATGAAGTTGATGACGGTCAAGATAACGTTAATGAAGTTAAAAGTGAAAATGTCGACAATCCTTTGACCAGCGAGACATACGGGATAGCATCCCAGAATAATCAAAACACTGAACTCCGCCGTCGTCGTCAAAGTACTGGACATTTTTCTCATCGTGCAGTAGAGGACACCACTACTTCAGCAATGTACGGAAGTGAACTTAATCCAAATACGATACCTGACGGCGGTAAGCAAGCCAACTTAGTGTTGTTTGGTTCGTTTATGGGGCTCATTGCTGATTTTGGAATTCCCAATTCTTTGGGTGCCATTGAGTCGTACGTTTCTACCAATCAACTCCGAGGTGTTTCCAAAGCAGATATAGGTTGGGTTTTTTCTCTTCATCTATGTGTAATGTACCTTGGAGGAGTTTTTTTTGGTGAAGTATTCGACCGATATGGAGCGAGGAAGTCCTTGATAGCAGGGAACAATATTGATGTGTGCCGGGATTATTTTGTACTGCTGAATGCCCGGGAGTTGTATCAGTTTTTATTAAGTTTTGCCCATATTGACTGCATTGGGGAACATCCTTAG > 677 LELG_02284 similar_to_MFS_myo-inositol_transporter hypothetical_protein XP_001527455.1 NA MLGYVACLAFYHVPDKSFGSGLNWRLMLGLACLPAIFILFQVPFVPESPRWLMGKGRHREAFESLEQMRYERIAAARDCFYQYVLLQEEEGYDVPTWKRVIEMFTIRRNRNAVIGSWIVMFMQQFCGINVIAYYSSSIFLNAGFSEISALLSSWGFGMINFTFAIPAFFTIDRFGRRNLLLFAFPCMCAMLLVAGFGFLINDTQGKLGMVTTGVYLFTCFYSSSEGPVPFAYSAEAFPLYIRDLGMAWATATCWFFNFMLAFTWPRMMRAMSPTGAFGFYAAWNAIGFFLVLWFLPETKNLTLEELDDVFAVPMYKHAIYRTRTFLNGVSKRVLHKDVKDPPPIYSHQRMAVTNPEWNEKVEVDHEE Saccharomycetes Lodderomyces_elongisporus_NRRL_YB-4239 Lodderomyces_elongisporus_NRRL_YB-4239 XM_001527405 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Cuomo,C.,_Kellis,M.,_Rasmussen,M.D.,_Grochow,J.A.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_MacCallum,I.A.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Zeng,Q.,_Kodira,C.,_Yandava,C.,_Alvarado,L.,_OLeary,S.,_Kurtzman,C.,_Reedy,J._and_Heitman,J. NA 0:1104 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001813684).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Lodderomyces_elongisporus_NRRL_YB-4239_hypothetical_protein_(LELG_02284)_partial_mRNA. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lodderomyces_elongisporus_A5DY47_LODEL.gb Lodderomyces 149245969 Unpublished fungi XM_001527405 NA NA budding_yeasts sac_fungi NA 1104 NA mRNA NA NRRL_YB-4239 NA Lodderomyces_elongisporus NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 379508 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Lodderomyces Annotation_of_the_Lodderomyces_elongisporus_genome NA XM_001527405.1 ATGCTTGGTTATGTTGCATGCTTGGCGTTTTACCATGTTCCAGATAAGAGTTTTGGCTCTGGATTGAACTGGAGACTTATGCTTGGACTGGCTTGTCTTCCAGCAATCTTTATTCTTTTCCAAGTCCCCTTTGTTCCTGAATCTCCACGTTGGTTGATGGGTAAAGGTCGTCATAGAGAAGCATTTGAGAGTTTAGAGCAGATGAGATACGAGAGAATAGCAGCAGCTAGAGACTGTTTCTACCAATACGTCTTACTTCAAGAAGAAGAAGGTTACGATGTGCCAACTTGGAAGAGAGTTATTGAGATGTTCACCATTAGAAGAAATAGGAATGCAGTGATTGGATCATGGATTGTGATGTTTATGCAACAATTTTGTGGTATCAATGTTATTGCATACTATTCCTCGTCGATTTTCCTTAATGCTGGTTTCAGTGAAATCTCAGCACTCTTGTCTTCATGGGGTTTCGGTATGATTAATTTTACATTTGCCATTCCAGCTTTTTTCACAATTGATAGGTTTGGACGTCGTAACTTGTTGTTATTCGCTTTCCCATGTATGTGTGCCATGTTATTGGTTGCTGGTTTTGGTTTTTTGATCAATGATACTCAGGGTAAATTGGGAATGGTTACCACAGGTGTTTATTTGTTTACTTGTTTCTACAGTTCTTCAGAAGGACCAGTGCCATTTGCCTACTCTGCCGAAGCATTCCCATTGTATATTCGTGACTTGGGTATGGCATGGGCTACTGCAACGTGTTGGTTCTTTAATTTTATGTTAGCTTTTACGTGGCCAAGAATGATGAGGGCAATGTCACCAACTGGTGCTTTTGGTTTTTATGCAGCATGGAATGCTATTGGATTCTTTTTGGTGTTGTGGTTCTTGCCAGAAACCAAGAATTTGACCTTGGAGGAGTTGGACGATGTGTTTGCTGTGCCCATGTACAAGCATGCAATCTATCGTACGAGGACTTTTTTGAATGGTGTTTCAAAGCGTGTGTTGCACAAGGATGTGAAGGACCCACCACCTATTTATTCACACCAGAGAATGGCAGTTACCAACCCAGAATGGAATGAAAAAGTTGAAGTTGACCATGAGGAGTGA > 678 LELG_05782 similar_to_plasma_membrane_permease hypothetical_protein XP_001528823.1 NA MSEKEPITIEQVHTSPDRQSDNIEISSSQTSSDNNNNNNNTDPQKHYVYHEEERRHRLDGGVKIRDALMILCAGFALISDGYQNNVMSMLNKVFAIEYPKVYDSNMSTQVSNASLVGTILGQFVIGICADLISRKWAIVIATCFLIFGSMMCAASHGKTVTGMFWMMTIFRGVTGFGIGAEYPSSSVAASEAANESVKKRGMAFILATNLPLSFGGPFASIIFLIVNKITGKHYDGLWRTMFAIGCFWPLSVFYFRMKMATSVLFKKSAIRVHPPYWLALKYYGFRLFGTCVTWFLYDFVTFPNGIFSATIISNVISDNMDLEKIAEWNLLLGAIALPGVFVGAYLVDIIGKKYTMLIGFIGYIIFGLIVGIAYYRVKKITALFIVLFGLMQSCGNAGMGNVLGLVSSESFATPVRGTFYGISALVGKIGAVAGTKAFQRVLTIGGTKESGQRYTFIIAACCGLVGVIITAIFIPHLKVDDLLEEDIKFKNYLRDQGYEGHIGLVEEGKEEDLESDETGTDGGSDVELQEQHYREGKSST Saccharomycetes Lodderomyces_elongisporus_NRRL_YB-4239 Lodderomyces_elongisporus_NRRL_YB-4239 XM_001528773 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_MacCallum,I.A.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Oleary,S.,_Kurtzman,C.,_Reedy,J._and_Heitman,J. NA 0:1623 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001813697).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Lodderomyces_elongisporus_NRRL_YB-4239_hypothetical_protein_(LELG_05782)_partial_mRNA. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lodderomyces_elongisporus_A5H2R7_LODEL.gb Lodderomyces 149248962 Unpublished fungi XM_001528773 NA NA budding_yeasts sac_fungi NA 1623 NA mRNA NA NRRL_YB-4239 NA Lodderomyces_elongisporus NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 379508 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Lodderomyces The_genome_sequence_of_Lodderomyces_elongisporus NA XM_001528773.1 ATGTCTGAGAAAGAACCAATAACCATTGAGCAAGTCCACACATCACCCGACCGGCAATCAGACAACATTGAGATCTCATCAAGCCAAACAAGCAGTGACAACAACAACAACAACAATAACACTGATCCCCAAAAACACTATGTCTACCATGAAGAAGAAAGACGACACAGACTTGATGGCGGAGTTAAAATCCGTGACGCATTAATGATTCTTTGTGCAGGGTTTGCTCTCATATCAGATGGTTACCAAAACAATGTCATGTCCATGCTTAACAAGGTATTTGCCATTGAATACCCCAAAGTCTATGACTCCAACATGTCAACCCAGGTCTCTAATGCTTCCTTGGTAGGAACAATTTTGGGACAGTTTGTTATTGGTATTTGTGCCGACTTGATCAGCAGAAAATGGGCTATTGTCATTGCAACATGCTTCTTGATCTTTGGCTCAATGATGTGTGCTGCCTCACACGGTAAAACCGTAACCGGAATGTTTTGGATGATGACCATATTCCGTGGTGTTACCGGGTTTGGAATTGGCGCAGAGTACCCTTCAAGCTCAGTTGCCGCATCAGAAGCAGCAAATGAAAGTGTTAAAAAAAGAGGTATGGCATTCATTCTCGCAACAAACTTACCCTTATCATTTGGTGGACCATTTGCCTCCATCATTTTTCTTATTGTCAACAAGATCACTGGGAAACACTATGATGGTTTATGGAGAACAATGTTTGCCATTGGATGTTTTTGGCCATTGTCTGTGTTTTATTTCCGTATGAAGATGGCAACCTCGGTACTTTTCAAAAAATCAGCAATTAGAGTCCACCCACCCTACTGGCTTGCATTGAAATACTATGGGTTTAGACTATTTGGAACTTGTGTCACTTGGTTTCTTTACGACTTTGTCACATTCCCCAATGGTATTTTTTCAGCAACCATTATCTCTAATGTGATTTCAGATAATATGGATTTGGAAAAAATCGCTGAATGGAACTTGTTGCTTGGAGCAATTGCCTTACCGGGTGTCTTTGTTGGTGCGTACCTCGTCGACATTATTGGTAAGAAATATACAATGTTGATTGGATTCATTGGATACATCATCTTTGGTCTTATTGTTGGTATTGCGTACTATAGAGTCAAAAAAATCACGGCATTATTTATTGTGCTTTTTGGATTGATGCAAAGTTGCGGTAATGCAGGTATGGGAAATGTCTTGGGCTTGGTTTCAAGTGAAAGTTTTGCTACACCTGTGAGAGGTACATTTTACGGTATTAGTGCTTTAGTTGGTAAGATTGGTGCTGTTGCAGGAACAAAAGCTTTTCAAAGAGTATTGACCATTGGTGGTACAAAGGAAAGTGGTCAGAGATATACGTTTATTATTGCCGCATGCTGTGGTCTTGTTGGAGTGATCATTACTGCTATTTTCATCCCACACTTAAAAGTAGACGACTTGTTGGAGGAAGATATTAAGTTCAAGAATTACTTGAGAGATCAAGGCTACGAAGGTCATATTGGATTGGTGGAGGAAGGCAAAGAAGAAGACTTGGAGTCTGACGAGACTGGTACTGACGGCGGCAGTGATGTTGAACTTCAAGAACAACATTATAGAGAAGGCAAATCGTCGACCTAA > 679 Bsph_4348 NA metabolite_transport_protein YP_001699935.1 11 MVEMTTNTVGTNKSKQTISRNRLLGIAGIGWLFDAMDVGILSFVIAALAADWGLTPSQSGWIGSINSIGMAVGALVFGVFADKVGRKQIFMWTLVLFSIASGLSAFTTTLTAFLMLRFLVGMGLGGELPVASTLVSESVAAKERGRVVVLLESFWAAGWLIAALISYFVIPTWGWRVALVLTALPAFYAIYLRWHLPDSPQFMVKKEAKARSILQNIKEVWSKKYARSTLMLWVLWFTVVFSYYGMFLWLPSVMVGKGFDMITSFKYVLIMTLAQLPGYFTAAWFIEKFGRKFVLVSYLIGTAVSAFIFGNADTLVVLVLSGMFLSFFNLGAWGALYAYTPEQYPSIIRGTGAGMAAAAGRIGGIFGPLLVGSLLTAGYDIGFIFAIFCGAIIIGVVGVIFLGKETKQLELE Bacillus/Lactobacillus/Streptococcus_group Lysinibacillus_sphaericus_C3-41 Lysinibacillus_sphaericus_C3-41 NC_010382 4227759..4228997 Hu,X.,_Fan,W.,_Han,B.,_Liu,H.,_Zheng,D.,_Li,Q.,_Dong,W.,_Yan,J.,_Gao,M.,_Berry,C._and_Yuan,Z. NA 0:1239 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000817.Bacillus_sphaericus_C3-41_is_available_from_Wuhan_Institute_ofVirology,_Chinese_Academy_of_Sciences._Email_address:_yzm@wh.iov.cnDNA_used_for_sequencing_was_isolated_from_B._sphaericus_C3-41following_standard_protocols.COMPLETENESS:_full_length. NA 26-JAN-2012 Lysinibacillus_sphaericus_C3-41_chromosome,_complete_genome. NA Bacillaceae_Fischer_1895 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Lysinibacillus_sphaericus_B1HYT2_LYSSC.gb Lysinibacillus_Ahmed_et_al._2007 169825618 J._Bacteriol._190_(8),_2892-2902_(2008) NA NC_010382 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 18296527 1239 NA genomic_DNA NA NA NA Lysinibacillus_sphaericus_(Meyer_and_Neide_1904)_Ahmed_et_al._2007 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 444177 Bacteria,_Firmicutes,_Bacillales,_Bacillaceae,_Lysinibacillus Complete_genome_sequence_of_the_mosquitocidal_bacterium_Bacillus_sphaericus_C3-41_and_comparison_with_those_of_closely_related_Bacillus_species NA NC_010382.1 TTATTCTAATTCTAGCTGCTTGGTTTCCTTCCCAAGAAATATGACGCCCACAACACCTATAATTATTGCTCCACAGAAAATGGCAAAAATGAAGCCTATATCATAGCCAGCTGTTAATAAAGAACCTACTAGTAAGGGCCCAAAAATCCCACCAATTCGCCCTGCAGCAGCTGCCATTCCTGCACCAGTGCCACGAATAATAGAAGGGTATTGCTCAGGTGTATAAGCATATAACGCCCCCCATGCACCTAAGTTAAAGAAAGATAAAAACATGCCAGATAATACTAGTACGACAAGTGTATCAGCATTCCCAAAAATGAAAGCACTCACTGCTGTACCAATTAGATAGGAAACAAGCACAAATTTCCGCCCAAATTTTTCAATAAACCATGCGGCAGTAAAATAACCAGGTAATTGAGCTAATGTCATAATGAGAACGTACTTAAAACTTGTAATCATATCAAAGCCCTTACCAACCATGACACTTGGAAGCCATAGGAACATACCGTAATACGAAAATACAACTGTAAACCACAGCACCCAAAGCATCAATGTGGAACGTGCATATTTTTTTGACCAAACTTCTTTTATATTTTGAAGGATACTACGCGCTTTGGCCTCTTTTTTCACCATAAACTGCGGTGAATCTGGGAGATGCCATCGAAGATAAATAGCATAAAATGCAGGGAGTGCTGTTAAGACTAACGCTACTCGCCATCCCCACGTTGGAATAACAAAATAGGATATTAATGCGGCAATTAGCCATCCCGCTGCCCAAAAGCTTTCCAATAAAACAACTACGCGCCCTCTTTCTTTTGCTGCCACACTTTCAGACACTAATGTGGATGCAACAGGTAATTCTCCGCCCAGGCCCATTCCTACTAAAAATCGTAGCATTAAAAATGCTGTTAATGTAGTCGTAAAAGCAGACAAACCGCTCGCAATGGAAAATAGGACAAGTGTCCACATAAAAATTTGCTTTCGCCCTACCTTGTCGGCAAAAACACCAAATACAAGGGCTCCTACAGCCATTCCAATTGAATTAATACTACCAATCCAACCAGATTGACTTGGTGTCAGTCCCCAATCTGCTGCCAATGCTGCAATGACAAACGATAATATCCCAACATCCATTGCATCAAAAAGCCACCCAATACCCGCAATACCCAACAGTCTATTTCTAGAAATTGTTTGCTTCGATTTATTTGTTCCTACAGTATTTGTCGTCATTTCAACCAC > 680 MGG_08617 NA hypothetical_protein XP_363033.2 NA MGGGTSLWASPDWKSDPKEIFNRQLALVSVTVAFAGCAYGFDTGNIGGVLKLAAFRHAFGLDVLSEAERDTRSGNIAAMVAAGGAGGALLGAPASDYLGRKYAVLVSAGIFLLGCAFQEVADLGVFYAGRLFSGIAIGMTSMLAPQYLAEVAPKSIRGSLTTTYNLMIVTCLALAFWVNYGVSIWATNKLDNTGWRLALGIQMIPGAALFILTFFVLESPRALISRGKKDLGLKNITALRGLPAEHPYVAREYMEICAQVDAEQEYAVGNNYLVVAKDVITNASNRRRFFLAVMLFLFHKFTGTDSLNYFAPDIFNMIGVPSGSSSLLTTGVYGLVKMFTTLVYVTVIVDRVGRRLPLMVGATMQATAMLYLALYIRFAEGSGGISQGGSGGGTPAGGIVGIIWIYIYAFGWSFGHSVAPYVVAAEIFPPRIRSVCMGICLFVNWIVDYGITLATPTMMTQLGYGTFLIYAMLTYIGVVFVYFCLPELKGRSIESMDDLFQRSIWTMWRHAYPTEEEKVRHDVQDMIVQKEQQLAEEEDARKKQTEHIEAR Sordariomycetes Magnaporthe_oryzae_70-15 Magnaporthe_oryzae_70-15 XM_363033 NA Dean,R.A.,_Talbot,N.J.,_Ebbole,D.J.,_Farman,M.L.,_Mitchell,T.K.,_Orbach,M.J.,_Thon,M.,_Kulkarni,R.,_Xu,J.R.,_Pan,H.,_Read,N.D.,_Lee,Y.H.,_Carbone,I.,_Brown,D.,_Oh,Y.Y.,_Donofrio,N.,_Jeong,J.S.,_Soanes,D.M.,_Djonovic,S.,_Kolomiets,E.,_Rehmeyer,C.,_Li,W.,_Harding,M.,_Kim,S.,_Lebrun,M.H.,_Bohnert,H.,_Coughlan,S.,_Butler,J.,_Calvo,S.,_Ma,L.J.,_Nicol,R.,_Purcell,S.,_Nusbaum,C.,_Galagan,J.E._and_Birren,B.W. NA 0:1656 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001798710).On_Apr_23,_2007_this_sequence_version_replaced_gi:39947679.COMPLETENESS:_incomplete_on_both_ends. NA 17-MAY-2010 Magnaporthe_oryzae_70-15_hypothetical_protein_(MGG_08617)_partial_mRNA. NA Magnaporthaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Magnaporthe_oryzae_A4QS96_MAGO7.gb Magnaporthe 145601726 Nature_434_(7036),_980-986_(2005) fungi XM_363033 NA NA Magnaporthales_Thongkantha,_Vijaykrishna_&_K.D._Hyde_2009 sac_fungi 15846337 1656 IV mRNA NA 70-15 NA rice_blast_fungus NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 242507 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Magnaporthales,_Magnaporthaceae,_Magnaporthe The_genome_sequence_of_the_rice_blast_fungus_Magnaporthe_grisea NA XM_363033.2 ATGGGAGGAGGCACTTCATTGTGGGCTTCCCCTGATTGGAAGAGTGACCCCAAGGAGATCTTCAACAGACAACTCGCCCTTGTCAGCGTCACTGTCGCATTTGCCGGCTGCGCTTATGGCTTTGATACTGGCAACATTGGCGGTGTTTTGAAGCTGGCCGCTTTCAGGCATGCTTTTGGCCTAGATGTACTGTCTGAAGCTGAGAGGGACACGAGGTCCGGAAACATAGCAGCAATGGTAGCAGCAGGGGGTGCCGGTGGTGCCCTCCTCGGTGCACCGGCATCCGACTACCTCGGTCGCAAATATGCCGTCCTCGTCTCGGCCGGTATCTTCCTCCTGGGCTGTGCGTTCCAGGAAGTGGCCGACCTGGGCGTATTTTACGCCGGTCGCTTATTTTCCGGAATCGCCATCGGCATGACGTCCATGCTGGCACCACAATACCTGGCCGAGGTGGCACCAAAGTCCATCCGAGGATCCCTGACGACGACGTACAACCTCATGATTGTGACGTGCCTGGCGTTGGCCTTTTGGGTCAACTATGGCGTGTCCATCTGGGCGACAAACAAGCTCGACAATACTGGCTGGCGGTTGGCTTTGGGCATCCAGATGATTCCAGGGGCGGCTTTGTTCATCTTGACATTTTTTGTCCTCGAAAGCCCTCGCGCCCTCATCTCGCGTGGTAAAAAAGACCTCGGCCTCAAAAACATCACCGCCCTCCGAGGCCTCCCCGCCGAGCACCCCTATGTGGCCCGTGAATACATGGAGATCTGCGCTCAGGTCGACGCGGAGCAAGAGTACGCCGTCGGAAACAACTACCTCGTCGTGGCCAAGGACGTCATCACCAACGCCAGCAACCGGCGACGCTTCTTCTTGGCCGTCATGCTGTTCCTGTTCCACAAGTTCACGGGCACCGACAGCCTCAACTACTTTGCTCCCGACATCTTCAACATGATCGGCGTCCCGTCCGGCTCTTCCAGTCTGCTCACCACAGGCGTGTATGGCTTGGTCAAGATGTTCACGACCCTCGTCTACGTCACCGTCATTGTCGACCGCGTTGGCCGCAGGCTGCCGCTCATGGTCGGCGCGACAATGCAAGCCACGGCCATGCTGTACCTGGCGCTGTACATTCGGTTCGCCGAGGGCAGCGGCGGCATCTCCCAGGGTGGCAGCGGCGGTGGTACGCCGGCCGGCGGCATCGTGGGCATCATCTGGATCTACATCTATGCCTTTGGGTGGTCGTTTGGACACTCGGTCGCGCCGTACGTGGTGGCGGCCGAGATCTTCCCGCCGCGCATCCGCTCCGTGTGCATGGGCATCTGTCTGTTTGTCAACTGGATCGTCGACTACGGCATCACGCTGGCGACTCCCACCATGATGACGCAGCTTGGCTACGGGACGTTTTTGATCTACGCCATGCTCACCTACATTGGCGTCGTGTTTGTGTACTTTTGCCTGCCCGAGCTCAAGGGCAGGAGTATAGAGTCCATGGACGACCTGTTCCAGAGGAGCATCTGGACCATGTGGCGTCATGCGTACCCGACCGAGGAGGAGAAGGTGCGCCACGATGTGCAAGACATGATTGTGCAAAAGGAGCAGCAGCTGGCCGAGGAGGAGGATGCGAGGAAGAAACAGACGGAGCACATCGAGGCTAGGTAG > 681 MGG_05889 NA hypothetical_protein XP_369575.2 NA MATPLGDEKQKQVQADSMPENHNDAGQATALAEDVAAAQYSPWTASMWRLYAVLACAYLCGCLNGYDGSLMGGLNGMDSYRDYFGTQVDGSSTGLTFAMYNIGGIAATAFTGPVNDWFGRRWGMWIGAAIIIIGTGVQAPAETGQRFLAGRFVLGFGVSFCCVSAPCYVSEIAHPVWRGTLTGLYNCTWYIGAILASWVTYAVAETMKGSLDAWRIPVWCQLVTSGFVLIFALFLPESPRWLMANDRYEEAQRVLAKYHGEGNPEHPLVLLQLKEMTMQITQDGSDKRWWDYSALFNTRAHRRRMICVLGMGVFGQASGNSLSSYYMAAMLKTAGITEQGRVLAFNATNPMVSFIGAVLGARMTDVVGRRPLLLSTIVFASVCFAIITGTTKLATEDPSNTAAGNATVAFIFIFGVVFSFGWTPLQSMYIAETLPTETRAKGTAIGSLASACASTVLQYSAGPAFESISYYYYIVFVFWDLFEGVIIYFFWPETKDRTLEELEEVFQAPNPVKKSLEKRDTHTVLNTLNANNDKMLSV Sordariomycetes Magnaporthe_oryzae_70-15 Magnaporthe_oryzae_70-15 XM_369575 NA Dean,R.A.,_Talbot,N.J.,_Ebbole,D.J.,_Farman,M.L.,_Mitchell,T.K.,_Orbach,M.J.,_Thon,M.,_Kulkarni,R.,_Xu,J.R.,_Pan,H.,_Read,N.D.,_Lee,Y.H.,_Carbone,I.,_Brown,D.,_Oh,Y.Y.,_Donofrio,N.,_Jeong,J.S.,_Soanes,D.M.,_Djonovic,S.,_Kolomiets,E.,_Rehmeyer,C.,_Li,W.,_Harding,M.,_Kim,S.,_Lebrun,M.H.,_Bohnert,H.,_Coughlan,S.,_Butler,J.,_Calvo,S.,_Ma,L.J.,_Nicol,R.,_Purcell,S.,_Nusbaum,C.,_Galagan,J.E._and_Birren,B.W. NA 0:1617 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001798722).On_Apr_23,_2007_this_sequence_version_replaced_gi:39976368.COMPLETENESS:_incomplete_on_both_ends. NA 17-MAY-2010 Magnaporthe_oryzae_70-15_hypothetical_protein_(MGG_05889)_partial_mRNA. NA Magnaporthaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Magnaporthe_oryzae_A4QWV9_MAGO7.gb Magnaporthe 145603686 Nature_434_(7036),_980-986_(2005) fungi XM_369575 NA NA Magnaporthales_Thongkantha,_Vijaykrishna_&_K.D._Hyde_2009 sac_fungi 15846337 1617 III mRNA NA 70-15 NA rice_blast_fungus NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 242507 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Magnaporthales,_Magnaporthaceae,_Magnaporthe The_genome_sequence_of_the_rice_blast_fungus_Magnaporthe_grisea NA XM_369575.2 ATGGCGACCCCATTGGGCGACGAGAAGCAAAAGCAAGTGCAGGCAGACTCTATGCCCGAGAACCACAACGATGCGGGCCAAGCTACCGCTCTCGCCGAAGATGTCGCTGCCGCCCAATACTCTCCCTGGACTGCTTCGATGTGGCGCCTCTATGCTGTTTTGGCCTGCGCCTACCTCTGTGGATGTCTGAACGGCTACGATGGCTCACTCATGGGTGGCCTGAACGGCATGGACTCCTACCGGGACTATTTTGGTACACAAGTTGACGGGAGCAGCACCGGTCTCACTTTTGCAATGTACAACATCGGTGGCATCGCCGCTACTGCCTTCACTGGGCCTGTCAACGACTGGTTTGGCCGCCGCTGGGGCATGTGGATTGGCGCAGCTATTATCATCATTGGTACCGGTGTTCAGGCACCCGCCGAGACTGGACAAAGATTCCTCGCAGGTCGTTTTGTCCTTGGATTCGGCGTTTCCTTCTGCTGCGTGTCTGCCCCATGCTACGTCAGCGAGATCGCGCATCCGGTATGGAGAGGAACATTGACTGGACTTTACAACTGCACTTGGTACATTGGTGCCATTCTCGCCAGCTGGGTCACCTACGCCGTCGCAGAGACCATGAAAGGAAGTCTGGACGCCTGGAGAATCCCGGTTTGGTGCCAGCTCGTCACCTCGGGCTTCGTCCTCATCTTTGCCCTTTTCCTGCCCGAGTCGCCCCGCTGGCTCATGGCCAACGATAGGTACGAGGAGGCTCAACGGGTTCTGGCCAAGTACCATGGCGAGGGAAATCCCGAACACCCTCTCGTGCTTCTCCAGCTCAAAGAGATGACGATGCAGATCACCCAGGATGGTTCCGACAAGCGTTGGTGGGACTACAGCGCTCTATTCAACACTCGGGCCCACCGTCGTCGCATGATTTGTGTTCTTGGCATGGGAGTGTTCGGCCAGGCTTCTGGCAACTCCCTATCCTCGTACTACATGGCGGCCATGCTGAAAACCGCTGGCATCACGGAGCAGGGCCGCGTCCTTGCCTTCAACGCCACCAACCCAATGGTCTCGTTCATTGGTGCCGTCCTTGGTGCCCGTATGACCGACGTCGTCGGACGTCGCCCGCTGCTGCTGTCCACAATTGTGTTTGCCTCGGTGTGTTTTGCCATCATCACTGGCACTACCAAGCTGGCCACTGAGGACCCATCCAACACGGCAGCTGGCAACGCCACCGTAGCCTTCATCTTCATCTTTGGCGTCGTCTTCTCCTTTGGTTGGACGCCCCTGCAAAGCATGTACATCGCCGAGACTCTTCCGACCGAGACCCGTGCCAAGGGTACCGCGATTGGCAGCCTTGCTTCGGCCTGTGCATCGACAGTTCTTCAGTACTCTGCAGGACCTGCTTTCGAGAGCATCAGCTACTACTACTACATTGTGTTTGTCTTTTGGGACCTGTTCGAGGGTGTCATTATATACTTCTTCTGGCCCGAGACCAAGGACCGCACCCTCGAGGAGCTCGAGGAGGTCTTCCAGGCTCCCAACCCTGTCAAGAAGAGTTTGGAGAAGCGAGACACTCACACAGTTCTCAACACACTCAATGCCAACAACGACAAGATGTTGTCCGTCTAA > 682 MGG_03299 NA hypothetical_protein XP_360756.1 NA MASEGVVTTPDAERIAAVKANNLTAGGNAAFKNFNNQFAHIDDRAERRRLALAEIDRAPFGWYHVRTICIAGIGFMTDSYDIFAVGLITSLLGIVYFNGKISSQDDTAIKVATSCGTVVGQVGFGVIADWIGRKKIYGVELIIIIVTTLIQALSSNSPAVSIIGLLVFWRILMGIGIGGDYPLSATITSEFATTKWRGFMMNAVFAMQGIGQLCAALVLLVLSAAFKSQLELASSPATCSTTGACLTAVDRMWRLIIGFGAIPGCIALYFRLTIPETPRYTFDVENDADTARGALKSDANATTAVTESPEEETASRAEFMRHYKQWKNLKVLLGCALSWFFLDIAFYGLGLNNPIILNAIGWSGGSNMYQVLYNTAVGNLVLVLAGAVPGYWVSAGLIDTVGRKPIQLFGFFALTLIFFVIGFKFWDLTGNELLALYTIAQFFFNCGPNSTTFIIPGEVFPTRYRSTSHGISAASGKMGAIIAQVVFGPLKDIGANPTLAKTDPKWAAPWLNHIMQIFACIMALGFFTTLLLPETARKTLEELGGTDATIGHSVSDVVEEKSSSPEFRSTSSDDRAASEHRADA Sordariomycetes Magnaporthe_oryzae_70-15 Magnaporthe_oryzae_70-15 XM_360756 NA Dean,R.A.,_Talbot,N.J.,_Ebbole,D.J.,_Farman,M.L.,_Mitchell,T.K.,_Orbach,M.J.,_Thon,M.,_Kulkarni,R.,_Xu,J.R.,_Pan,H.,_Read,N.D.,_Lee,Y.H.,_Carbone,I.,_Brown,D.,_Oh,Y.Y.,_Donofrio,N.,_Jeong,J.S.,_Soanes,D.M.,_Djonovic,S.,_Kolomiets,E.,_Rehmeyer,C.,_Li,W.,_Harding,M.,_Kim,S.,_Lebrun,M.H.,_Bohnert,H.,_Coughlan,S.,_Butler,J.,_Calvo,S.,_Ma,L.J.,_Nicol,R.,_Purcell,S.,_Nusbaum,C.,_Galagan,J.E._and_Birren,B.W. NA 0:1755 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001798736).COMPLETENESS:_incomplete_on_both_ends. NA 17-MAY-2010 Magnaporthe_oryzae_70-15_hypothetical_protein_(MGG_03299)_partial_mRNA. NA Magnaporthaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Magnaporthe_oryzae_A4R7B6_MAGO7.gb Magnaporthe 39942437 Nature_434_(7036),_980-986_(2005) fungi XM_360756 NA NA Magnaporthales_Thongkantha,_Vijaykrishna_&_K.D._Hyde_2009 sac_fungi 15846337 1755 V mRNA NA 70-15 NA rice_blast_fungus NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 242507 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Magnaporthales,_Magnaporthaceae,_Magnaporthe The_genome_sequence_of_the_rice_blast_fungus_Magnaporthe_grisea NA XM_360756.1 ATGGCATCCGAGGGCGTCGTCACAACTCCTGATGCTGAGCGCATCGCAGCAGTCAAGGCCAACAACTTGACTGCTGGCGGCAACGCGGCCTTCAAGAACTTCAACAACCAGTTTGCCCACATCGACGACCGGGCCGAGCGTCGCCGACTGGCTCTTGCAGAGATTGACCGTGCACCATTTGGGTGGTACCATGTCAGGACTATCTGCATCGCAGGTATAGGTTTCATGACCGACTCGTACGACATTTTTGCTGTCGGTCTGATTACAAGTCTCCTTGGCATTGTCTACTTCAACGGCAAGATCTCAAGCCAGGATGACACAGCCATCAAAGTCGCTACCTCTTGCGGAACTGTTGTTGGCCAGGTCGGATTTGGAGTCATTGCAGACTGGATCGGACGAAAGAAGATATATGGTGTTGAGCTTATCATCATTATCGTAACCACTCTGATCCAGGCCTTGTCCTCCAACTCTCCGGCTGTTTCCATCATCGGCCTCTTGGTTTTCTGGCGTATCCTCATGGGCATCGGCATTGGTGGAGACTACCCCCTATCGGCTACGATCACTTCCGAGTTTGCGACCACCAAGTGGCGCGGCTTCATGATGAACGCCGTGTTTGCCATGCAAGGCATTGGTCAGCTTTGCGCTGCCCTGGTTCTGCTCGTCCTCTCGGCGGCATTCAAATCGCAGCTTGAACTGGCCTCTAGCCCGGCCACTTGTTCAACGACAGGTGCTTGCCTTACTGCTGTTGACAGGATGTGGAGGCTTATCATTGGCTTTGGCGCTATTCCTGGTTGCATCGCTCTCTATTTCCGCTTGACAATACCCGAGACCCCACGGTATACTTTTGACGTCGAGAACGACGCAGACACCGCCAGGGGGGCGCTCAAGTCTGACGCCAACGCCACTACCGCTGTCACTGAGAGCCCCGAGGAGGAGACAGCTTCGCGAGCAGAGTTCATGAGGCACTACAAGCAGTGGAAGAACCTGAAAGTCCTTCTCGGCTGTGCCTTGTCCTGGTTTTTCTTGGACATTGCATTCTACGGACTTGGTCTCAACAACCCCATTATTCTGAACGCGATCGGCTGGTCAGGCGGCAGCAACATGTACCAGGTCCTTTACAACACTGCCGTTGGCAACCTCGTTCTCGTTCTCGCCGGTGCCGTCCCCGGATATTGGGTATCGGCCGGGCTCATTGACACTGTCGGACGCAAACCTATCCAGCTTTTTGGATTCTTTGCCCTGACACTTATCTTCTTCGTCATTGGCTTCAAGTTCTGGGACCTCACCGGCAACGAGCTTTTGGCTCTCTACACCATCGCCCAGTTCTTCTTCAACTGCGGACCCAACAGCACCACCTTTATCATCCCAGGCGAAGTCTTCCCGACACGCTACCGATCCACTAGTCACGGCATTTCAGCAGCATCTGGCAAAATGGGTGCCATCATTGCACAAGTCGTATTTGGACCTTTGAAGGACATTGGTGCCAACCCGACCCTTGCCAAGACGGACCCGAAGTGGGCTGCCCCGTGGCTCAACCACATCATGCAGATCTTTGCCTGCATCATGGCTCTGGGCTTCTTCACGACCCTTCTGCTTCCAGAGACGGCGAGGAAAACCCTTGAAGAGCTCGGGGGCACAGATGCTACCATCGGCCATTCAGTTTCCGACGTGGTTGAGGAGAAATCAAGCTCTCCGGAATTTAGGAGCACCAGCTCGGACGATAGGGCTGCCTCTGAGCATCGTGCTGACGCGTAA > 683 MGG_00085 NA hypothetical_protein XP_369159.1 NA MDKKEDMTIHDDLGEKPEVVGRTKEMNTTSAALAAAIAAEPPRLLSAGMIKLYAIMSVGYLVSTMNGFDGSLMGAINDMTTYQQTFGLSSAGSSAGIVFIVYNLGQIAAFPFCPFLADGYGRRWCIFIGCVIVLVGTAIQGASHTQSMFIGGRFVLGLGASIASAAAPAYTVELAHPAYRGFMAGMYNNFWWIGNILAGWTTYGTNLNFDNAWAWRIPTILQCALPAVVMVMILFFPESPRWLIAQDRAEEALAIFAKYHGDGNPDSAIVQLQYREIVEEREAMRDDNPWWDFRELVNTRSARYRLSMVVMMAFFGQWSGNNVVSYFMPAMVKEAGITDGNTRLLLNAINPLFGLLASIFGAYMLDRVGRRFMMLAGLSGALFFYVLLTAFTAEVKNNPNLSYGVIVSIYLFGIFFAAGFTPLQTLYSMECLTNRTRAKGSGINFLFLNIAMIVNTYGIAVGMEAIQWKLYIVYIGWIAIEIAIIYFFAVETAGKTLEELGGIFEAPNPRKASTQKTRIEVDEAGNILSMSSGDGRVRDSERAI Sordariomycetes Magnaporthe_oryzae_70-15 Magnaporthe_oryzae_70-15 XM_369159 NA Dean,R.A.,_Talbot,N.J.,_Ebbole,D.J.,_Farman,M.L.,_Mitchell,T.K.,_Orbach,M.J.,_Thon,M.,_Kulkarni,R.,_Xu,J.R.,_Pan,H.,_Read,N.D.,_Lee,Y.H.,_Carbone,I.,_Brown,D.,_Oh,Y.Y.,_Donofrio,N.,_Jeong,J.S.,_Soanes,D.M.,_Djonovic,S.,_Kolomiets,E.,_Rehmeyer,C.,_Li,W.,_Harding,M.,_Kim,S.,_Lebrun,M.H.,_Bohnert,H.,_Coughlan,S.,_Butler,J.,_Calvo,S.,_Ma,L.J.,_Nicol,R.,_Purcell,S.,_Nusbaum,C.,_Galagan,J.E._and_Birren,B.W. NA 0:1635 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001798740).COMPLETENESS:_incomplete_on_both_ends. NA 17-MAY-2010 Magnaporthe_oryzae_70-15_hypothetical_protein_(MGG_00085)_partial_mRNA. NA Magnaporthaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Magnaporthe_oryzae_A4RGD5_MAGO7.gb Magnaporthe 39975536 Nature_434_(7036),_980-986_(2005) fungi XM_369159 NA NA Magnaporthales_Thongkantha,_Vijaykrishna_&_K.D._Hyde_2009 sac_fungi 15846337 1635 VI mRNA NA 70-15 NA rice_blast_fungus NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 242507 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Magnaporthales,_Magnaporthaceae,_Magnaporthe The_genome_sequence_of_the_rice_blast_fungus_Magnaporthe_grisea NA XM_369159.1 ATGGACAAGAAGGAAGACATGACCATCCACGACGACCTGGGCGAGAAGCCCGAGGTCGTCGGCAGGACCAAGGAGATGAACACCACCTCGGCCGCCCTGGCTGCTGCCATTGCTGCCGAGCCGCCACGGCTCCTCTCGGCCGGTATGATCAAGTTGTATGCCATCATGTCGGTTGGCTACTTGGTCTCGACCATGAACGGTTTTGACGGTAGTTTGATGGGTGCCATCAACGACATGACGACCTACCAACAAACCTTTGGCCTCAGCTCCGCTGGCTCTTCGGCCGGCATTGTCTTTATCGTATACAACCTCGGCCAAATCGCCGCTTTCCCCTTTTGCCCCTTTCTCGCCGACGGCTACGGACGCCGCTGGTGCATCTTTATCGGCTGCGTCATCGTCCTCGTCGGCACGGCCATCCAGGGCGCGTCGCACACGCAGAGCATGTTCATCGGCGGGCGCTTCGTGCTGGGCCTGGGGGCGTCGATCGCGTCGGCGGCGGCGCCCGCGTACACGGTGGAGCTCGCGCACCCGGCGTACCGAGGGTTCATGGCGGGCATGTACAACAACTTTTGGTGGATCGGCAACATCCTGGCCGGGTGGACTACGTACGGCACCAACCTCAACTTTGACAACGCGTGGGCCTGGCGCATCCCCACCATCCTGCAGTGCGCGCTGCCGGCCGTGGTCATGGTCATGATCCTCTTCTTCCCCGAGTCGCCGCGTTGGCTGATCGCCCAGGACCGCGCCGAGGAGGCCCTGGCCATCTTTGCAAAGTACCACGGCGACGGCAACCCCGACAGCGCCATCGTGCAGCTGCAGTACCGCGAGATTGTCGAGGAGCGGGAGGCCATGAGGGACGACAACCCCTGGTGGGATTTCCGGGAGCTGGTCAACACGCGCTCTGCTCGGTACCGTCTTTCCATGGTTGTCATGATGGCTTTCTTTGGACAGTGGTCTGGCAACAATGTCGTTTCCTACTTTATGCCTGCCATGGTCAAGGAGGCCGGCATCACCGACGGCAACACCCGCCTGCTCCTCAACGCCATCAACCCGCTCTTTGGCCTCCTCGCCTCCATCTTTGGCGCCTACATGCTGGACCGCGTGGGCCGGCGCTTCATGATGCTGGCGGGCCTGAGCGGCGCCCTCTTCTTCTACGTGCTGCTGACGGCCTTCACGGCCGAGGTCAAGAACAACCCGAACCTGTCGTACGGCGTCATCGTGTCCATCTACCTCTTTGGCATCTTCTTCGCGGCCGGCTTCACGCCGCTCCAGACGCTCTACTCGATGGAGTGCCTCACGAACCGCACGCGCGCCAAGGGCTCCGGCATCAACTTCCTGTTCCTCAACATCGCCATGATCGTCAACACGTACGGCATCGCCGTCGGCATGGAGGCCATCCAGTGGAAGCTGTACATTGTCTACATTGGCTGGATCGCCATCGAGATCGCCATCATCTACTTCTTCGCCGTCGAGACCGCCGGCAAGACCCTCGAGGAGCTCGGCGGCATCTTTGAGGCCCCCAACCCGCGCAAGGCCAGCACGCAAAAGACCAGGATCGAGGTCGACGAGGCTGGCAACATCCTCAGCATGTCGAGCGGGGACGGGAGGGTGCGCGACTCGGAGAGGGCGATTTGA > 684 MGG_09633 NA hypothetical_protein XP_364788.2 NA MGVIDKKKDSQRAGSSELTAVLPADARPWYLTPHLIRLNLLLLVPLLSSATVGYDGSMMNGLQILTFFKRDFNNPTGAILGLMNAVYPLGKVIALFVVTPVADRFGRKIPMAIGLVGCIAFAILQGLSPNLTAFVLARAFLGFFTSFISQPSPVLIAELAYPTQRGKLTSLYNTFFYFGAIFAAWLTFGTFKIDSTWSWRIPSIVQGGIPALQLAALWFLPESPRYLVSRGRVDEARRDLVKHHAGGDASSPLVAFEMSEIERAIAAENESYSANSWLDLFRGAANRKRTLIAVIVGFFSQWNGVGVVSYYLTLVLNTIGITDPKDQTLINGMLQIFNWLIATFAGALMVDRLGRRTLFLVSTSGMLVSYICWTGLTSGFVTSKDEGMGRAVLAFIFIFYFFYDIAWTPLLQAYPVEIYPYTLRSRGLSITLITSFTGLIVGNQVNPIAMGAIQWKYYIVFCCLLAVLLVLVYFLFPETKGRTLEEIREVFEGPTLNSVDVKVEEAAGRDDGDVQVEAMHSKHVEAVKVVDAFISLTFRGPIPLSVCAGSHLAVPEYNQMRQHGDNNSTIRQAKHMIQAIGSSSVKKGRTFAERHLAAAANSKPPPSTAVTTPSTKTRAKGGVLVMEAMWARFFPLTRTLYSYGARRRTVIGDVQRVFCDFSMDQNLGWLGPESRLKDTALGAGSARYWHLQPRLGPAYAPRPRHRDQYHRGGQDHTSAQGHPWLHSVEGAPSSFTVYMENADGPGISSSKRHEFKRPGGGFYWETDMVALEIAAGSVESSVMPWTETFRVLELLGTMRQQGRAQSPQDSE Sordariomycetes Magnaporthe_oryzae_70-15 Magnaporthe_oryzae_70-15 XM_364788 NA Dean,R.A.,_Talbot,N.J.,_Ebbole,D.J.,_Farman,M.L.,_Mitchell,T.K.,_Orbach,M.J.,_Thon,M.,_Kulkarni,R.,_Xu,J.R.,_Pan,H.,_Read,N.D.,_Lee,Y.H.,_Carbone,I.,_Brown,D.,_Oh,Y.Y.,_Donofrio,N.,_Jeong,J.S.,_Soanes,D.M.,_Djonovic,S.,_Kolomiets,E.,_Rehmeyer,C.,_Li,W.,_Harding,M.,_Kim,S.,_Lebrun,M.H.,_Bohnert,H.,_Coughlan,S.,_Butler,J.,_Calvo,S.,_Ma,L.J.,_Nicol,R.,_Purcell,S.,_Nusbaum,C.,_Galagan,J.E._and_Birren,B.W. NA 0:2436 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001798743).On_Apr_23,_2007_this_sequence_version_replaced_gi:39962554.COMPLETENESS:_incomplete_on_both_ends. NA 17-MAY-2010 Magnaporthe_oryzae_70-15_hypothetical_protein_(MGG_09633)_partial_mRNA. NA Magnaporthaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Magnaporthe_oryzae_A4RNN2_MAGO7.gb Magnaporthe 145614926 Nature_434_(7036),_980-986_(2005) fungi XM_364788 NA NA Magnaporthales_Thongkantha,_Vijaykrishna_&_K.D._Hyde_2009 sac_fungi 15846337 2436 VII mRNA NA 70-15 NA rice_blast_fungus NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 242507 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Magnaporthales,_Magnaporthaceae,_Magnaporthe The_genome_sequence_of_the_rice_blast_fungus_Magnaporthe_grisea NA XM_364788.2 ATGGGCGTCATCGACAAGAAAAAAGACAGCCAGCGCGCTGGGAGCTCCGAGCTCACGGCTGTGCTTCCCGCCGATGCGCGGCCGTGGTATCTGACGCCTCATCTCATCCGGCTCAACTTGCTTCTGCTGGTGCCGTTACTTTCCTCCGCCACGGTCGGATACGATGGCTCGATGATGAACGGTCTACAAATCCTAACCTTCTTCAAGCGCGACTTCAACAACCCGACGGGCGCTATACTCGGGCTCATGAACGCCGTCTACCCCCTCGGCAAGGTCATCGCACTGTTCGTCGTCACGCCCGTCGCGGACCGGTTCGGGCGCAAGATCCCCATGGCCATCGGCCTGGTGGGGTGCATCGCCTTTGCCATCCTGCAGGGCCTGTCGCCCAACCTGACGGCCTTTGTGCTCGCGCGCGCGTTCCTGGGCTTCTTCACGTCCTTCATCTCGCAGCCCAGCCCCGTGCTGATCGCCGAGCTGGCCTACCCGACGCAGCGCGGCAAGCTGACCTCGCTCTACAACACCTTTTTCTACTTTGGCGCCATCTTTGCCGCCTGGTTGACCTTTGGCACCTTCAAGATCGACTCGACCTGGAGCTGGAGGATCCCGTCCATCGTCCAGGGCGGGATCCCCGCCCTGCAGCTCGCCGCGCTCTGGTTCCTGCCCGAGTCGCCGCGCTACCTCGTGTCCCGGGGCCGCGTCGACGAGGCCCGCCGGGACCTGGTCAAGCACCACGCGGGGGGCGACGCCAGCTCGCCGCTGGTGGCCTTTGAGATGAGCGAGATCGAGCGGGCCATCGCGGCCGAGAACGAGTCGTACTCGGCCAACTCGTGGCTCGACCTGTTCCGCGGCGCCGCGAACCGGAAGCGCACGCTCATCGCCGTCATCGTGGGCTTCTTCAGCCAGTGGAACGGCGTCGGCGTCGTCAGCTACTACCTGACGCTGGTCCTCAACACCATCGGCATCACGGACCCCAAGGACCAGACGCTGATCAACGGCATGCTGCAAATCTTCAACTGGCTGATTGCCACCTTTGCCGGCGCCCTGATGGTGGACCGCCTCGGCCGCCGCACCTTGTTCCTCGTCTCCACCTCGGGCATGCTCGTCAGTTACATCTGCTGGACGGGCCTGACCTCTGGCTTCGTGACGTCCAAGGACGAGGGCATGGGCCGCGCCGTGCTGGCCTTCATCTTCATCTTCTACTTCTTCTACGACATCGCCTGGACCCCGCTGCTGCAGGCCTATCCCGTGGAGATTTATCCCTACACGCTCCGCAGCCGTGGTCTCTCCATCACCCTCATCACGTCCTTTACCGGTCTCATCGTCGGCAACCAGGTCAACCCCATCGCCATGGGCGCCATCCAGTGGAAGTACTACATTGTCTTTTGCTGCCTGCTGGCCGTCCTGCTGGTCCTCGTCTACTTTTTATTCCCCGAGACCAAGGGCCGCACGCTCGAGGAGATCCGCGAGGTCTTTGAGGGCCCCACCCTGAATTCCGTGGATGTCAAAGTCGAGGAGGCTGCTGGCCGCGACGATGGAGACGTTCAGGTCGAGGCGATGCATTCCAAGCATGTCGAGGCTGTAAAGGTTGTAGACGCATTCATCTCTTTGACTTTCCGCGGACCGATCCCGTTATCTGTTTGTGCGGGAAGCCACCTTGCAGTTCCGGAATACAACCAGATGCGTCAACACGGCGACAATAATAGTACTATTAGACAAGCAAAGCACATGATCCAAGCGATCGGGTCGTCGTCGGTCAAAAAGGGGAGGACGTTTGCCGAAAGGCATCTGGCGGCAGCAGCCAACAGCAAACCCCCACCATCTACGGCAGTTACGACGCCGTCTACCAAGACCCGGGCCAAGGGGGGCGTCTTGGTCATGGAGGCCATGTGGGCACGCTTCTTCCCGCTGACGCGGACACTGTATTCGTATGGTGCACGGCGAAGAACAGTCATTGGCGACGTCCAGCGCGTCTTTTGCGACTTTTCCATGGACCAGAATCTGGGCTGGCTGGGACCCGAGTCGCGCCTCAAAGACACGGCCCTGGGCGCCGGGTCTGCTCGATATTGGCATCTACAGCCTCGCCTGGGCCCTGCTTATGCTCCAAGACCCCGCCACCGTGATCAATACCACCGCGGGGGACAAGACCACACGTCAGCCCAAGGGCACCCGTGGCTACATAGTGTCGAGGGGGCGCCTAGCTCCTTCACGGTGTACATGGAAAACGCCGACGGCCCAGGGATATCCTCCTCCAAACGTCACGAGTTTAAGCGGCCTGGTGGGGGATTCTACTGGGAAACGGACATGGTAGCACTCGAAATCGCGGCCGGGAGTGTCGAAAGCAGTGTGATGCCGTGGACCGAGACTTTCAGGGTGCTGGAGCTGCTAGGTACTATGAGGCAACAAGGCAGAGCCCAATCTCCTCAAGACTCCGAATGA > 685 FB2170_03315 NA xylose_transporter YP_003861580.1 11 MNSKLFRISLTAALSGFLFGFDTVVISGANLPIKELWDTSPWFHGTFIMSMALWGTVIGSLFGGIPCDRFGRKKTLFWIGILYAVSALGSGLATDPYMFSFFRFIGGLGVGASSVAAPIYISEISSPENRGKLGALYQFNLVLGILIAFISNYLLQGIGGDNDWRWMLGVEAIPAILYTIMVISIPNSPRWLVLNKGDDEGALNTLKLIYTDEEAHNKLDDIKAHNPAGQAKESLFSGNYKTPLILAFLIAFFNQLSGINFVLYYAPEILERAGLAAQESLFSSISIGIVNLIFTFVGVWLIDRLGRKQLMKIGSIGYIISLGMVGWCFYTGASSVLLLTFICVFIASHAIGQGAVIWVFISEIFPNKIRAFGQSWGTGTHWIFAAIITLITPIFLDSEKGIFKDNPWPIFIFFAGMMVLQLLFVLFMMPETKGISLEELSDRLSGKKSKS not_Flavobacteria_Cavalier-Smith_2002 Maribacter_sp._HTCC2170 Maribacter_sp._HTCC2170 NC_014472 1006118..1007473 Oh,H.M.,_Kang,I.,_Yang,S.J.,_Jang,Y.,_Vergin,K.L.,_Giovannoni,S.J._and_Cho,J.C. NA 0:1356 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002157.available_from_Korean_Culture_Center_of_Microorganisms.COMPLETENESS:_full_length. NA 03-JAN-2011 Maribacter_sp._HTCC2170_chromosome,_complete_genome. NA Myroidaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Maribacter_sp_A4AMQ8_MARSH.gb Maribacter_Nedashkovskaya_et_al._2004_emend._Barbeyron_et_al._2008 305664376 J._Bacteriol._193_(1),_303-304_(2011) NA NC_014472 NA NA Flavobacteriales Cytophaga-Flexibacter-Bacteroides_phylum 21037013 1356 NA genomic_DNA NA HTCC2170 NA Maribacter_sp._HTCC2170 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 313603 Bacteria,_Bacteroidetes,_Flavobacteriia,_Flavobacteriales,_Flavobacteriaceae,_Maribacter Complete_Genome_Sequence_of_Strain_HTCC2170,_a_Novel_Member_of_the_Genus_Maribacter_in_the_Family_Flavobacteriaceae NA NC_014472.1 ATGAATTCCAAACTCTTCCGAATTTCTTTGACCGCCGCCTTATCTGGATTTTTATTCGGCTTTGATACTGTTGTAATCAGTGGAGCAAACCTTCCTATTAAAGAACTTTGGGACACTTCTCCCTGGTTTCATGGAACTTTCATCATGTCTATGGCATTATGGGGTACGGTAATAGGTTCTTTGTTTGGAGGCATTCCATGTGACCGATTCGGTCGAAAGAAAACTTTATTTTGGATTGGTATTTTGTATGCTGTTTCGGCCTTGGGTTCTGGACTTGCCACGGATCCATATATGTTTTCATTTTTTAGATTCATTGGAGGTTTAGGTGTCGGGGCTTCTTCAGTTGCCGCTCCCATTTATATTTCAGAAATCTCATCTCCAGAAAATCGTGGAAAACTTGGCGCTCTATATCAATTCAATCTGGTATTGGGTATACTAATTGCTTTTATCTCAAATTATCTACTTCAAGGAATTGGTGGCGATAATGACTGGAGATGGATGCTTGGAGTAGAAGCCATCCCAGCAATTTTGTACACTATTATGGTAATCAGTATCCCCAATAGCCCGAGATGGTTGGTTCTTAACAAAGGTGATGATGAAGGTGCACTAAACACTTTAAAATTGATTTATACCGATGAGGAGGCCCATAATAAGCTAGATGATATAAAAGCCCACAATCCCGCAGGTCAAGCAAAAGAAAGCTTGTTTTCGGGCAATTACAAAACCCCCTTGATTTTGGCCTTTCTTATAGCTTTTTTCAATCAATTATCAGGCATTAATTTTGTCCTGTACTATGCTCCTGAAATTCTTGAACGAGCAGGTCTTGCAGCTCAAGAATCCTTGTTCAGTTCAATATCAATTGGAATTGTAAATCTAATATTCACATTTGTGGGGGTTTGGTTGATAGATAGATTAGGAAGAAAACAATTAATGAAAATCGGATCTATAGGTTATATTATTAGCCTTGGTATGGTAGGTTGGTGTTTTTATACAGGTGCCAGTTCAGTTCTACTTTTGACATTTATCTGTGTTTTCATCGCCTCACACGCCATTGGACAGGGAGCCGTTATATGGGTGTTTATTTCTGAGATTTTTCCAAATAAAATTAGGGCATTTGGTCAATCATGGGGCACTGGCACCCATTGGATATTCGCAGCCATTATTACCTTGATAACCCCAATTTTTCTAGATAGCGAGAAAGGTATTTTCAAGGACAACCCTTGGCCAATTTTTATATTTTTTGCTGGAATGATGGTTCTACAGTTACTGTTCGTCTTATTTATGATGCCAGAAACCAAAGGAATTTCCCTAGAGGAATTAAGCGACAGATTAAGTGGTAAAAAATCAAAATCTTAA > 686 Mnod_2761 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_met:M446_6136_general_substrate_transporter general_substrate_transporter YP_002498016.1 11 MTDDTADPRPRSKAATVLRVTSGNFLEMFDFFLFGFYATYISRAFFPAGNEYASLMLTFVTFGAGFLMRPLGAIFLGAYVDRIGRRRGLIVTLTIMAAGTILIAFVPSYETIGLFAPFLVLVGRLLQGFSAGVELGGVSVYLAEMATPGRKGFYVAWQSGSQQVAIMASAAIGYGLSQALTPEAVGSWGWRVPFFIGCLIVPFLFYIRRSLEETQEFLHRKHRPSVGEIFASLGRNWRIVLLGMLLVVMTTVSFYTITVYTPTFGKSVLKLSATDSLIVTFCVAVSNFFWLPVMGALSDKIGRKPILLVFSALTLLTAYPALAWLVANTSFANMLIVLLWLSFLYGSYNGAMVVALTEIVPAHVRTAGFSLAYSLATALFGGFTPLISTWLIEETGNRAAPAFWLAFAGACGLVATLLVYRERSSARFGLAEGPAAV alpha_subgroup Methylobacterium_nodulans_ORS_2060 Methylobacterium_nodulans_ORS_2060 NC_011894 2833670..2834983 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Sims,D.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ivanova,N.,_Marx,C.J._and_Richardson,P. NA 0:1314 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001349.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4003783Source_DNA_and_bacteria_available_from_Christopher_J._Marx(cmarx@oeb.harvard.edu)Contacts:_Christopher_J._Marx_(cmarx@oeb.harvard.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 27-JAN-2012 Methylobacterium_nodulans_ORS_2060_chromosome,_complete_genome. NA Methylobacterium_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Methylobacterium_nodulans_B8IFH8_METNO.gb Protomonas_Urakami_and_Komagata_1984 220920054 Unpublished NA NC_011894 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1314 NA genomic_DNA NA ORS_2060 NA Methylobacterium_nodulans_Jourand_et_al._2004 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 460265 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Methylobacteriaceae,_Methylobacterium Complete_sequence_of_chromosome_of_Methylobacterium_nodulans_ORS_2060 NA NC_011894.1 TCAGACGGCCGCCGGGCCTTCGGCGAGGCCGAACCGGGCGGAACTGCGCTCCCGATAGACGAGGAGCGTCGCGACGAGGCCGCAGGCACCCGCGAAGGCGAGCCAGAAGGCGGGCGCAGCGCGGTTGCCCGTCTCCTCGATGAGCCAAGTCGAGATCAGCGGCGTGAAGCCGCCGAACAGCGCGGTGGCGAGCGAATAGGCGAGCGAGAAGCCGGCGGTGCGCACATGGGCGGGCACGATCTCGGTGAGCGCCACCACCATCGCTCCGTTGTAGCTCCCGTACAGGAACGACAGCCACAGCAACACGATCAGCATGTTGGCAAAGGAGGTGTTCGCCACGAGCCAGGCCAGCGCCGGATAGGCGGTGAGCAGGGTGAGTGCGGAGAACACCAGCAGGATGGGCTTGCGGCCGATCTTGTCGGAGAGCGCGCCCATCACGGGCAGCCAGAAGAAGTTCGACACCGCGACACAGAAGGTGACGATCAGGCTGTCGGTGGCCGAGAGCTTCAGCACGGACTTGCCGAAGGTCGGGGTATAGACCGTGATCGTGTAGAACGAGACCGTGGTCATCACCACGAGGAGCATGCCGAGCAGCACGATCCGCCAGTTGCGGCCGAGTGAAGCGAAGATCTCGCCCACCGACGGGCGGTGCTTGCGGTGCAGGAACTCCTGCGTCTCCTCCAGCGAGCGGCGGATGTAGAACAGGAACGGCACGATCAGGCAGCCGATGAAGAACGGCACCCGCCAGCCCCAGGAGCCCACGGCCTCCGGCGTGAGAGCTTGGCTGAGGCCGTAGCCGATCGCAGCCGAGGCCATGATGGCGACCTGCTGGCTGCCGGACTGCCAGGCGACGTAGAAGCCCTTGCGGCCGGGGGTGGCCATCTCGGCGAGATAGACCGACACGCCGCCGAGTTCGACGCCGGCCGAGAAGCCCTGCAGCAGGCGCCCCACCAGGACGAGGAACGGCGCGAACAGACCGATGGTCTCGTAGGAGGGCACGAAGGCGATCAGGATGGTGCCCGCCGCCATGATGGTGAGGGTGACGATGAGGCCCCTGCGCCGTCCGATCCGGTCGACATAGGCGCCGAGGAAGATCGCCCCGAGGGGCCGCATCAGGAAGCCGGCCCCGAAGGTCACGAAGGTGAGCATCAGGGAGGCGTATTCGTTGCCGGCCGGGAAGAACGCCCGGGAGATGTAGGTGGCGTAGAAGCCGAACAGGAAGAAGTCGAACATCTCCAGGAAGTTGCCGCTCGTCACGCGCAGCACGGTGGCGGCTTTCGAACGGGGTCGCGGGTCGGCGGTGTCGTCAGTCAT > 687 Mpop_2166 PFAM:_general_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bam:Bamb_1159_general_substrate_transporter general_substrate_transporter YP_001924863.1 11 MLSMHVDDEKNWKASECTVTEPSTIRRAISAASIGNVAEWYDFGVYAFFEPTIQKVFFSNLSHTMGEIATFGLFAVAFLIRPLGGMFFGPLADRIGRNRVLAATMILMALGTFAIGCIPSQESIGILAPLLLLLARLVQGFSTGGEYGSAMTFIAEYAPDRRRGYLGSWLEFGTFTGYLLGAIVVTVAGVALSEQQLLDWGWRLPFFLALPLGLVGVYLRSQLAETPAFAALEQEAEDREKQHRASQTAKDILGLWPYVLVCMGLALAWNVPNYMLTSYMPTYVTQTLPMMQHSGGISPTASQVLQIVVMVLALLAIPLIGRLSDRFGRKPFGLIGSVGLVVLALPMILLIRSQSEVAVFSGLLIMGLLLICFSATMPSTLPALFPTNIRASGLSISFNVSVSLFAGTTSVVVGSLVAYTGDLNWPAYYLMIAGVIGAVSLLVIREPNGTSMWGSPPAAASEAEAHDLVQSPGASHASTGLGIALPVVPTPRQII alpha_subgroup Methylobacterium_populi_BJ001 Methylobacterium_populi_BJ001 NC_010725 2317335..2318822 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Kuske,C.R.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Marx,C._and_Richardson,P. NA 0:1488 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001029.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4003782Source_DNA_and_bacteria_available_from_Christopher_Marx(cmarx@oeb.harvard.edu)Contacts:_Christopher_Marx_(cmarx@oeb.harvard.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 26-JAN-2012 Methylobacterium_populi_BJ001_chromosome,_complete_genome. NA Methylobacterium_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Methylobacterium_populi_B1Z795_METPB.gb Protomonas_Urakami_and_Komagata_1984 188579286 Unpublished NA NC_010725 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1488 NA genomic_DNA NA BJ001 NA Methylobacterium_populum NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 441620 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Methylobacteriaceae,_Methylobacterium Complete_sequence_of_chromosome_of_methylobacterium_populi_BJ001 NA NC_010725.1 ATGCTGTCAATGCATGTCGATGACGAGAAGAACTGGAAGGCTTCGGAATGTACCGTGACCGAGCCGTCGACGATCCGGCGGGCGATCTCGGCGGCGTCGATCGGGAATGTCGCCGAATGGTATGATTTCGGCGTCTACGCCTTCTTCGAGCCGACGATCCAGAAGGTGTTCTTCTCGAATCTCTCCCACACGATGGGTGAGATCGCCACCTTCGGCCTGTTCGCCGTCGCCTTCCTGATCCGACCGCTCGGCGGCATGTTCTTCGGCCCGCTGGCCGACCGGATCGGCCGCAACCGGGTTCTCGCGGCGACCATGATCCTGATGGCTCTGGGCACCTTCGCCATCGGCTGCATCCCGAGCCAGGAGAGCATCGGCATCCTGGCCCCTCTCCTTCTTCTGCTCGCCCGGCTGGTCCAGGGCTTCTCGACCGGCGGCGAGTACGGCAGCGCCATGACCTTCATCGCCGAATACGCGCCCGACCGGCGGCGCGGCTATCTCGGCAGCTGGCTGGAATTCGGCACCTTCACCGGCTACCTGCTGGGCGCGATCGTCGTGACCGTGGCGGGCGTCGCCCTGTCCGAGCAGCAGCTGCTCGACTGGGGCTGGCGGCTGCCGTTCTTCCTGGCGCTGCCGCTCGGCCTCGTCGGCGTCTACCTGCGCTCGCAGCTTGCCGAAACGCCGGCCTTCGCCGCGCTCGAGCAGGAGGCGGAGGATCGCGAGAAGCAGCACCGCGCGAGCCAGACGGCGAAGGACATCCTCGGCCTCTGGCCCTACGTCCTCGTCTGCATGGGCCTGGCGCTCGCCTGGAACGTGCCGAACTACATGCTGACCTCCTACATGCCGACCTACGTGACGCAGACGCTGCCGATGATGCAGCATTCCGGCGGCATCTCGCCGACCGCGTCGCAGGTCCTTCAGATCGTCGTGATGGTGCTCGCGCTCCTGGCGATCCCGCTCATCGGCCGCCTGTCCGACCGCTTCGGGCGCAAGCCCTTCGGACTGATCGGGTCGGTCGGCCTCGTCGTGCTGGCCCTGCCGATGATCCTGCTGATCCGCAGCCAGAGCGAAGTTGCCGTCTTCTCCGGTCTGCTGATCATGGGTCTGCTGCTGATCTGCTTCAGCGCGACCATGCCCTCGACCCTGCCGGCGCTCTTTCCCACCAACATCCGGGCGAGCGGCCTCTCGATCTCGTTCAACGTCTCGGTGTCGCTGTTTGCCGGAACGACGTCCGTGGTGGTCGGATCGCTCGTGGCCTATACCGGCGATCTCAACTGGCCGGCCTATTACCTGATGATCGCCGGCGTGATCGGCGCCGTCTCGCTTCTCGTCATCCGCGAGCCCAACGGCACGAGCATGTGGGGATCACCGCCTGCCGCTGCGAGCGAGGCGGAGGCGCACGATCTCGTGCAAAGCCCCGGCGCGAGCCATGCGAGCACCGGGCTCGGGATCGCGCTGCCGGTCGTTCCGACGCCGCGGCAGATCATCTGA > 688 Mrad2831_0670 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_mex:Mext_2290_general_substrate_transporter hypothetical_protein YP_001753364.1 11 MDTPPNDLDARALGRAAPAKGLAREACPYAEGTEARTLWLSGYDEALAEGETPVTGGLAKHPVDGSSR alpha_subgroup Methylobacterium_radiotolerans_JCM_2831 Methylobacterium_radiotolerans_JCM_2831 NC_010505 716968..718284 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Kiss,H.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Kuske,C.R.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Marx,C.J._and_Richardson,P. NA 1316:>1317 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001001.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4003781Source_DNA_and_bacteria_available_from_Christopher_J._Marx(cmarx@oeb.harvard.edu)Contacts:_Christopher_J._Marx_(cmarx@oeb.harvard.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 26-JAN-2012 Methylobacterium_radiotolerans_JCM_2831_chromosome,_complete_genome. NA Methylobacterium_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Methylobacterium_radiotolerans_B1LWH8_METRJ.gb Protomonas_Urakami_and_Komagata_1984 170746450 Unpublished NA NC_010505 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1317 NA genomic_DNA NA JCM_2831 NA Pseudomonas_radiora_Ito_and_Iizuka_1971_(Approved_Lists_1980) NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 426355 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Methylobacteriaceae,_Methylobacterium Complete_sequence_of_chromosome_of_Methylobacterium_radiotolerans_JCM_2831 NA NC_010505.1 TCACGCCTCGGAATCGGCGTCGAGGTCGCGCCCGCGCGTCTCGGGCAGCAGGACAGCCGCGATCGTCCCGACGAGGCTGAACGCGGCGAGGTAGTAGGCCGGCGCGAGCCGGTCGCCGGTCGCGGCGATCAGCCAGTTCACCACATAGTTGGTGCTGCCGCCGAACACCGAGACGGAGACCGCGTAGACGATCGACAATCCGGCGCTGCGCACCGCCCGGGGCAGGGCCTCGGGGATGCCGACGATCACCGCCGCGGCGTTGATGGACGACAGGGCCGAGAGCAGGAAGGTGACCGCGTACACGCTGGCGGCGCTCGGCGCCCGCACCACCCAGGCGAAGGCCGGGATCGCCAGGATCAGGATCAGCGCCCGCGGCCAGATCATCACCGGTCGCCGCCCGTACCGGTCGGCCAGCCAGCCGCCGAGCAGCGGGAAGATCACCGAGGCGAGCCCGAGCGCGATCGGCACCGCCGTGGCGGCGGTCTCGCTCAGGCCGAGGGTTGCGCCGGCGAAGACCGGCATGTTGGTGCCGACCGCGTTCGACACGGTCGAGGCCGCGATGACCAGGAAGGTCAGGCCCAGCAGGCGGCCGTGCTCGCGCAGGAGCCGGCCGACCACCGCCGTCGTCGAGGCCGCCGCGTGCGGATCCTCCTCGGCGCCGGCCGTCTCGGGCAGGTGACTGCGGATGACGAGGCCGACCGGCACGACGCACAGGCCGAGGGCGAACATCAGCCGCCAGCCCCACTGCGCCATCGCCTGATCGCCGACCGCGAGCGCCAGGGCGGTCGCGACGATCCCGGCGAACAGGGCCGCGCAGCCCTGGCTGGCGATCTGCCAGCTCGTCACGAAGCCGCGCCGGTCCGGGGGCGCGGCTTCCAGCAGGAAGGCCGTCGAGGGGCCGACCTCGCCGCCGAGGGCGAGACCCTGCACGAGGCGGCCGGCAATGACGATGACCTGCGCCCAGCCGCCGATCGTCGCGTAGGAGGGGCAGGCGGCCAGCAGGACCATGCCGACCGCCATCAGCGCGATGGTGATCAGCATCGCGGGCTTGCGGCCGGCCCGGTCCGCGAAAGCGCCGATCAGCACGCCGCCGATGGGCCGCATGACGTAGCCGATGCCGAACAGGGCGAGCGATGCCAGCAGGCTGTGGGTCGGGTCGTTCGCCGGGAAGAAGGCCTCGCCGATCGGCTTGGCGAAGAAGGCGTAGACGGTGAAATCGTAGAACTCGAGGGCGTTGCCCAGGACGACGGCCCCGACCGACTTGCGGTCGAGGGCGGGATGATGCGCGCCGGGATGCGGTGCGGTCCGGGCGTCCAT > 689 Mrad2831_5934 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bja:bll3875_hypothetical_metabolite_transport_protein major_facilitator_transporter YP_001766675.1 11 MSEAVSPAVNAGGRLDRLPIGPFHRRIMWLIGIGMFFDGFDIYIAATVLGATLKSGFSTLPQNAWFVSATFVGMMAGSFLTGFFGDRYGRRFTYQANLLVFGLAALGAAFAPNMTVLIVLRFIMGVGLGAENVVGYSTMTEFVPARSRGRFLGLMAVFVVTGLPAASLIGYLIIPAFGWRAMFALGGLGALAVWYARKSLPESPRWLEAVGRHAEAEALMRAIEAEAARGAPLPPAAATAPVTQLGLAALFRPPLLSRLLLGCLCLVVINTLLYGFVTWLPTFFIRQGLSVATSFGYALLMGLGAPVGSAIGALTADRWGRKPTIVGASATAILFGILYPMTLDPVLLPLVGFGLTVPIYVLVALLFGIYIPELFPTEVRLRASGLCNTVGRGATIVTPFLVVTLFEAYGIAGVTGLMIGLLALQIVAVAAFGVEPRSQSLESLEAGVAPAEGGPADRARDAVPRPIL alpha_subgroup Methylobacterium_radiotolerans_JCM_2831 Methylobacterium_radiotolerans_JCM_2831 NC_010510 185090..186496 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Kiss,H.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Kuske,C.R.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Marx,C.J._and_Richardson,P. NA 0:1407 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001002.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4003781Source_DNA_and_bacteria_available_from_Christopher_J._Marx(cmarx@oeb.harvard.edu)Contacts:_Christopher_J._Marx_(cmarx@oeb.harvard.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 26-JAN-2012 Methylobacterium_radiotolerans_JCM_2831_plasmid_pMRAD01,_complete_sequence. NA Methylobacterium_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Methylobacterium_radiotolerans_B1M8P8_METRJ.gb Protomonas_Urakami_and_Komagata_1984 170745058 Unpublished NA NC_010510 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1407 NA genomic_DNA NA JCM_2831 NA Pseudomonas_radiora_Ito_and_Iizuka_1971_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 426355 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Methylobacteriaceae,_Methylobacterium Complete_sequence_of_plasmid1_of_Methylobacterium_radiotolerans_JCM_2831 NA NC_010510.1 ATGTCCGAAGCCGTGAGCCCGGCGGTCAACGCCGGAGGCCGCCTCGACCGCCTGCCGATCGGGCCGTTCCACCGCCGCATCATGTGGCTGATCGGGATCGGCATGTTCTTCGACGGGTTCGACATCTACATCGCCGCCACCGTGCTCGGCGCGACCCTGAAGAGCGGCTTCTCGACCCTGCCGCAGAACGCGTGGTTCGTCTCGGCCACCTTCGTGGGGATGATGGCGGGCTCGTTCCTGACGGGCTTCTTCGGCGACCGCTACGGGCGGCGCTTCACCTACCAGGCCAACCTGCTGGTCTTCGGGCTGGCCGCGCTCGGGGCGGCCTTCGCGCCCAACATGACGGTGCTGATCGTGCTCCGCTTCATCATGGGCGTCGGGCTCGGGGCCGAGAACGTCGTGGGCTACTCGACCATGACCGAGTTCGTGCCGGCGCGCTCGCGCGGGCGCTTCCTCGGCCTCATGGCGGTGTTCGTCGTCACGGGCCTGCCGGCCGCCTCCCTGATCGGCTACCTGATCATCCCAGCCTTCGGATGGCGGGCGATGTTCGCGCTGGGCGGTCTCGGGGCGCTCGCCGTCTGGTACGCCCGCAAGAGCCTGCCGGAATCGCCGCGCTGGCTCGAGGCCGTGGGGCGCCACGCCGAGGCCGAGGCGCTGATGCGCGCGATCGAGGCCGAGGCCGCCCGCGGCGCGCCCCTGCCGCCCGCCGCCGCGACGGCGCCGGTCACGCAGCTCGGGCTCGCCGCCCTGTTCCGGCCGCCGCTGCTGTCGCGGCTGCTGCTGGGCTGCCTGTGCCTCGTGGTGATCAACACCCTGCTGTACGGCTTCGTGACCTGGCTGCCGACCTTCTTCATCCGGCAGGGACTCTCGGTGGCGACCTCCTTCGGCTACGCGCTGCTGATGGGGCTCGGCGCGCCGGTGGGCAGCGCCATCGGCGCCCTGACCGCCGACCGCTGGGGTCGCAAGCCGACGATCGTCGGCGCCTCGGCGACGGCCATCCTGTTCGGGATCCTCTACCCGATGACCCTGGACCCGGTGCTGCTGCCGCTGGTCGGGTTCGGGCTGACGGTGCCGATCTACGTGCTGGTGGCCCTGCTGTTCGGGATCTACATCCCCGAGCTGTTCCCGACCGAGGTGCGCCTGCGGGCCTCGGGCCTGTGCAACACGGTCGGGCGCGGGGCGACCATCGTGACGCCCTTCCTGGTCGTGACCCTGTTCGAGGCCTACGGCATCGCGGGCGTGACCGGCCTGATGATCGGGCTGCTCGCCCTGCAGATCGTGGCGGTCGCGGCGTTCGGCGTCGAGCCGCGCAGCCAGAGCCTGGAGAGCCTGGAGGCGGGCGTCGCGCCGGCCGAGGGCGGCCCGGCCGACCGGGCGCGGGACGCGGTCCCGCGGCCGATCCTCTGA > 690 Msil_0395 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_rpd:RPD_1026_major_facilitator_transporter major_facilitator_superfamily_protein YP_002360731.1 11 MAPVETVIPARLDRLAWSWFHTLVVLALGVTWILDGLEVTLAGSVAGALKASPRLQFSDADVGLASTAYLVGAVAGALLFGWMTDRLGRRLMFFATLGLYLVGGAATALSWDLPSFCLFRLLTGAGIGGEYSAINSTIQEMIPARYRGRTDLAINGSFWIGGALGAASSLALLDPAIIDPETGWRLAFMIGSLIGLAVLVMRRFIPESPRWLVIHGRLDDADRIMDEIEASAGAGKAPETLKPLRIRPRRFTPLREVFHTLFVVYRQRSLVGLALMAAQAFFYNAIFFTYALVLTRFYGVPANHIGWFILPFALANFMGPLALGPLFDSLGRKPMISFTYAISGALLALSGVLFAFELVSAAQLTIAWMVIFFFASAAAGAAYLTVSETFPVEIRALAIAVFYAAGTAIGGAGAPYLLGVLIATGSRMSVLIGYLIGAALMLAAALAQWLYGIAAEGRPLEAVAQPLSSLTE alpha_subgroup Methylocella_silvestris_BL2 Methylocella_silvestris_BL2 NC_011666 431472..432890 Chen,Y.,_Crombie,A.,_Rahman,M.T.,_Dedysh,S.N.,_Liesack,W.,_Stott,M.B.,_Alam,M.,_Theisen,A.R.,_Murrell,J.C._and_Dunfield,P.F. NA 0:1419 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001280.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4023905Source_DNA_and_bacteria_available_from_Peter_Dunfield(P.Dunfield@gns.cri.nz)Contacts:_Peter_Dunfield_(P.Dunfield@gns.cri.nz)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-PGFFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Methylocella_silvestris_BL2_chromosome,_complete_genome. NA Beijerinckiaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Methylocella_silvestris_B8EQU8_METSB.gb Methylocella_Dedysh_et_al._2000_emend._Dunfield_et_al._2003 217976200 J._Bacteriol._192_(14),_3840-3841_(2010) NA NC_011666 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives 20472789 1419 NA genomic_DNA NA BL2 NA Methylocella_silvestris_Dunfield_et_al._2003 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 395965 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Beijerinckiaceae,_Methylocella Complete_genome_sequence_of_the_aerobic_facultative_methanotroph_Methylocella_silvestris_BL2 NA NC_011666.1 TCATTCTGTGAGCGAAGACAAGGGCTGAGCGACAGCCTCGAGAGGCCTGCCTTCGGCCGCAATGCCGTAAAGCCATTGCGCCAGCGCGGCGGCCAGCATCAGCGCCGCGCCGATGAGATATCCAATCAGCACGCTCATTCGCGAGCCGGTCGCGATCAGGACGCCAAGCAGATACGGAGCTCCGGCGCCGCCGATCGCCGTGCCGGCGGCGTAGAAAACGGCGATGGCGAGCGCCCTGATCTCGACCGGAAAGGTCTCGCTGACCGTCAGATAGGCGGCTCCCGCCGCGGCGGATGCGAAGAAGAAAATGACCATCCAGGCGATGGTCAATTGCGCCGCGCTAACCAGTTCGAACGCGAACAGCACTCCGCTCAAGGCGAGAAGCGCGCCGGAAATCGCATAGGTGAAACTGATCATCGGCTTGCGGCCGAGGCTGTCGAAGAGCGGCCCGAGCGCCAGCGGCCCCATAAAATTGGCCAGCGCAAAGGGCAGGATGAACCAGCCGATATGATTGGCCGGAACGCCATAAAACCGCGTCAGCACAAGCGCATAAGTAAAAAAAATTGCATTATAGAAGAACGCCTGCGCGGCCATCAGCGCGAGGCCGACGAGCGAGCGCTGGCGGTAGACCACGAAGAGCGTGTGAAACACTTCGCGCAGCGGCGTAAAGCGGCGCGGACGGATGCGCAGGGGTTTGAGCGTTTCCGGCGCCTTGCCGGCCCCGGCACTCGCCTCGATCTCATCCATGATGCGGTCCGCGTCGTCGAGCCGGCCGTGGATGACGAGCCAGCGCGGGCTTTCGGGAATGAAGCGGCGCATAACCAGCACGGCGAGGCCGATCAGCGAGCCGATCATAAAGGCGAGGCGCCAGCCGGTTTCCGGGTCAATGATCGCCGGATCCAGCAGCGCCAGGGAACTCGCCGCGCCAAGGGCGCCGCCGATCCAGAACGAACCATTAATGGCAAGGTCCGTCCGGCCGCGATAACGGGCCGGGATCATCTCCTGAATCGTCGAATTGATCGCGCTATATTCGCCGCCGATGCCGGCCCCGGTGAGGAGGCGGAAGAGGCAGAAGCTCGGCAGATCCCAGGACAGGGCCGTGGCCGCGCCGCCGACGAGATAAAGGCCGAGAGTCGCGAAAAACATAAGGCGGCGGCCGAGGCGATCGGTCATCCAGCCAAACAGCAGCGCGCCGGCCACCGCGCCGACGAGATAAGCGGTCGAGGCAAGTCCAACGTCGGCGTCGGAGAATTGCAATCTTGGGCTCGCCTTGAGGGCGCCGGCGACAGAGCCCGCCAGCGTCACTTCGAGCCCGTCAAGAATCCAGGTGACGCCGAGCGCGAGGACCACAAGCGTATGAAACCAGCTCCAGGCGAGCCGATCGAGCCGCGCGGGAATCACGGTCTCGACCGGCGCCAT > 691 MPER_01810 AutoFACTv3.4_(automatic_product_annotation):Function:_GIT1_of_S._cerevisiae_is_required_for_uptake_of_glycerophosphoinositol hypothetical_protein XP_002397718.1 NA GTFYGLSAAVGKAGAAVGTQAFTPIQNNLGKRWTFIIAAICGVSGILVTYFFVPDMTGVDLADEDRKFMVYLASNGWMGEVGESDEKEILSAGGQTTEMEAESDSASEK Hymenomycetidae Moniliophthora_perniciosa_FA553 Moniliophthora_perniciosa_FA553 XM_002397677 NA Mondego,J.M.,_Carazzolle,M.F.,_Costa,G.G.,_Formighieri,E.F.,_Parizzi,L.P.,_Rincones,J.,_Cotomacci,C.,_Carraro,D.M.,_Cunha,A.F.,_Carrer,H.,_Vidal,R.O.,_Estrela,R.C.,_Garcia,O.,_Thomazella,D.P.,_de_Oliveira,B.V.,_Pires,A.B.,_Rio,M.C.,_Araujo,M.R.,_de_Moraes,M.H.,_Castro,L.A.,_Gramacho,K.P.,_Goncalves,M.S.,_Neto,J.P.,_Neto,A.G.,_Barbosa,L.V.,_Guiltinan,M.J.,_Bailey,B.A.,_Meinhardt,L.W.,_Cascardo,J.C._and_Pereira,G.A. NA <0:331 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002501329).COMPLETENESS:_incomplete_on_both_ends. NA 28-MAY-2009 Moniliophthora_perniciosa_FA553_hypothetical_protein_(MPER_01810)_mRNA,_partial_cds. NA Marasmiaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Moniliophthora_perniciosa_E2L7F3_MONPE.gb Moniliophthora 238610416 BMC_Genomics_9,_548_(2008) fungi XM_002397677 NA NA gill_mushrooms basidiomycetes 19019209 331 NA mRNA NA FA553 NA Moniliophthora_perniciosa NA forward Agaricomycetidae NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 554373 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Agaricomycetidae,_Agaricales,_Marasmiaceae,_mitosporic_Marasmiaceae,_Moniliophthora A_genome_survey_of_Moniliophthora_perniciosa_gives_new_insights_into_Witches_Broom_Disease_of_cacao NA XM_002397677.1 GGGTACATTTTATGGATTATCAGCAGCCGTGGGCAAGGCCGGTGCAGCAGTTGGTACACAGGCATTCACGCCGATACAGAACAATCTTGGAAAACGATGGACCTTTATCATCGCCGCAATTTGCGGAGTTTCGGGTATCCTGGTTACCTACTTCTTTGTCCCAGATATGACTGGTGTCGATCTGGCTGATGAAGACCGCAAGTTTATGGTGTACTTGGCAAGCAATGGATGGATGGGAGAAGTGGGCGAAAGTGACGAGAAGGAGATCCTTTCTGCTGGTGGACAGACTACGGAAATGGAAGCAGAATCCGATAGTGCAAGCGAAAAGTGA > 692 MPER_02595 AutoFACTv3.4_(automatic_product_annotation):MFS_multidrug_transporter,_putative hypothetical_protein XP_002397051.1 NA MFHSNVTSKATDPSSNAVGDSDEEERRDDDYDWDLDPDNARNWTAKRKWTAVFVVSLYTLIPPLGSSMMAPGLPDIANKYAITSQTALALTLSIFLLSFAIGRQPLFLAPLSEMYGRTWVFHIANMFSIAFSLGCAFSPSAGVLIAFRFLSGFSGAAPVACGGGT Hymenomycetidae Moniliophthora_perniciosa_FA553 Moniliophthora_perniciosa_FA553 XM_002397010 NA Mondego,J.M.,_Carazzolle,M.F.,_Costa,G.G.,_Formighieri,E.F.,_Parizzi,L.P.,_Rincones,J.,_Cotomacci,C.,_Carraro,D.M.,_Cunha,A.F.,_Carrer,H.,_Vidal,R.O.,_Estrela,R.C.,_Garcia,O.,_Thomazella,D.P.,_de_Oliveira,B.V.,_Pires,A.B.,_Rio,M.C.,_Araujo,M.R.,_de_Moraes,M.H.,_Castro,L.A.,_Gramacho,K.P.,_Goncalves,M.S.,_Neto,J.P.,_Neto,A.G.,_Barbosa,L.V.,_Guiltinan,M.J.,_Bailey,B.A.,_Meinhardt,L.W.,_Cascardo,J.C._and_Pereira,G.A. NA 0:>495 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002499985).COMPLETENESS:_incomplete_on_both_ends. NA 28-MAY-2009 Moniliophthora_perniciosa_FA553_hypothetical_protein_(MPER_02595)_mRNA,_partial_cds. NA Marasmiaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Moniliophthora_perniciosa_E2L9C0_MONPE.gb Moniliophthora 238607738 BMC_Genomics_9,_548_(2008) fungi XM_002397010 NA NA gill_mushrooms basidiomycetes 19019209 495 NA mRNA NA FA553 NA Moniliophthora_perniciosa NA forward Agaricomycetidae NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 554373 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Agaricomycetidae,_Agaricales,_Marasmiaceae,_mitosporic_Marasmiaceae,_Moniliophthora A_genome_survey_of_Moniliophthora_perniciosa_gives_new_insights_into_Witches_Broom_Disease_of_cacao NA XM_002397010.1 ATGTTCCATTCCAATGTAACTAGCAAGGCCACGGACCCATCGTCAAACGCAGTAGGAGATTCAGACGAAGAGGAACGACGCGACGACGATTATGACTGGGATTTAGATCCTGATAATGCTAGGAATTGGACAGCAAAGAGGAAGTGGACGGCTGTATTTGTAGTCTCGCTCTACACGCTCATACCACCACTTGGAAGCTCGATGATGGCACCAGGTCTACCGGATATCGCAAATAAATACGCTATTACTTCCCAAACTGCTCTCGCATTAACACTCAGCATATTCTTGTTGTCTTTCGCCATAGGCAGACAGCCGCTCTTTTTGGCCCCACTTTCTGAGATGTACGGAAGGACATGGGTTTTTCATATCGCCAATATGTTCTCGATCGCGTTCAGCTTGGGATGCGCATTTTCGCCATCAGCCGGAGTTCTCATCGCTTTCCGATTCCTTAGCGGCTTTAGTGGTGCCGCTCCCGTCGCATGTGGAGGAGGTACC > 693 MPER_05539 AutoFACTv3.4_(automatic_product_annotation):Hexose_transport-related_protein,_putative hypothetical_protein XP_002394556.1 NA MLIAGRVIVETSSFFTSITCACLVNELLHPRIRGVFSALFTFTLMVGAIVGSWLTFGIVQWQSSWSWRLPILLQMIGPVILFPLSLLCPESPRWLVKNGQREEAHDILAKYHANGDRDDELVKNELTQIVTSIEKEEREQMSWKSFISTPGNRRRTILVILVTTAPVTTGLTIVAAYMVPTLRMVNITSPTHLSGPRSATHGFDFYICHARVLFHSYGASGGVFVFTPPASCDCLRRRAVSVRIRSELCVARFSQRYIPPEILPFSAARLKGWTLGNTIQAICASFNTFVNPIALEAIG Hymenomycetidae Moniliophthora_perniciosa_FA553 Moniliophthora_perniciosa_FA553 XM_002394515 NA Mondego,J.M.,_Carazzolle,M.F.,_Costa,G.G.,_Formighieri,E.F.,_Parizzi,L.P.,_Rincones,J.,_Cotomacci,C.,_Carraro,D.M.,_Cunha,A.F.,_Carrer,H.,_Vidal,R.O.,_Estrela,R.C.,_Garcia,O.,_Thomazella,D.P.,_de_Oliveira,B.V.,_Pires,A.B.,_Rio,M.C.,_Araujo,M.R.,_de_Moraes,M.H.,_Castro,L.A.,_Gramacho,K.P.,_Goncalves,M.S.,_Neto,J.P.,_Neto,A.G.,_Barbosa,L.V.,_Guiltinan,M.J.,_Bailey,B.A.,_Meinhardt,L.W.,_Cascardo,J.C._and_Pereira,G.A. NA 0:>897 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002495480).COMPLETENESS:_incomplete_on_both_ends. NA 28-MAY-2009 Moniliophthora_perniciosa_FA553_hypothetical_protein_(MPER_05539)_mRNA,_partial_cds. NA Marasmiaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Moniliophthora_perniciosa_E2LGG5_MONPE.gb Moniliophthora 238598243 BMC_Genomics_9,_548_(2008) fungi XM_002394515 NA NA gill_mushrooms basidiomycetes 19019209 897 NA mRNA NA FA553 NA Moniliophthora_perniciosa NA forward Agaricomycetidae NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 554373 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Agaricomycetidae,_Agaricales,_Marasmiaceae,_mitosporic_Marasmiaceae,_Moniliophthora A_genome_survey_of_Moniliophthora_perniciosa_gives_new_insights_into_Witches_Broom_Disease_of_cacao NA XM_002394515.1 ATGCTCATTGCTGGCCGAGTTATCGTTGAAACCTCCAGCTTCTTCACCTCAATAACTTGTGCTTGTCTCGTCAATGAGCTTCTTCATCCACGCATCAGAGGAGTTTTCAGCGCCCTTTTCACGTTCACATTGATGGTTGGTGCTATCGTTGGCTCGTGGTTGACGTTTGGAATAGTTCAATGGCAATCCTCATGGTCGTGGCGCCTGCCCATACTACTGCAAATGATCGGACCAGTGATACTATTCCCTCTGTCGTTACTTTGTCCCGAGTCACCTCGATGGCTTGTCAAGAACGGTCAAAGGGAGGAGGCACACGACATCCTCGCAAAATATCATGCAAATGGCGACAGAGATGATGAATTGGTGAAGAACGAGCTGACTCAGATCGTGACCAGCATTGAGAAAGAAGAAAGGGAGCAGATGTCTTGGAAATCGTTCATATCAACTCCTGGAAACAGAAGGAGAACAATATTAGTGATCTTGGTAACCACGGCTCCTGTCACAACTGGCCTGACTATCGTTGCGGCGTATATGGTTCCCACATTGCGGATGGTGAATATTACTAGTCCTACGCACCTGTCCGGACCTCGGTCGGCGACCCATGGTTTTGATTTCTACATCTGCCATGCTCGTGTTCTTTTCCATTCTTACGGTGCTTCTGGCGGTGTTTTCGTATTCACCCCTCCCGCCTCTTGCGATTGCCTACGTCGTCGTGCTGTATCTGTTCGCATTCGCAGTGAACTTTGCGTGGCTCGCTTTAGCCAGCGGTATATCCCGCCGGAAATATTACCATTCTCTGCTGCGCGTCTCAAGGGATGGACGTTGGGGAACACCATACAGGCTATTTGCGCCTCGTTCAACACGTTTGTAAACCCAATTGCACTTGAAGCGATAGGT > 694 MPER_06922 AutoFACTv3.4_(automatic_product_annotation):Phosphate_transporter hypothetical_protein XP_002393354.1 NA MYGVELMIIIITTFAQALSGNGHAVGIIGVLVVWRFLMGIGIGGDYPLSAVISSEFASTRIRGRMMNAVFASQGWGNFGFGTAAALVAFIITAAYKSSILADSASTHWDSVDQMWRILIGLGCVPGVVALYFRLTIPETPRFTMDIERNIAQASKDIEGILTTGKSSVDPDAVVQKVEAPRASWADFSAHFSKWENFKVLFGCAYSWFALDIAFYGLGLNSSIILGAIGFGTPPTAGAQGVYDNLKNICVGNLILSAAGLIPGYWVCFLFVDSWGRKPIQLMGFIALTVLFIIMGFGYDALTKTPGATKAFVFLYWGSFP Hymenomycetidae Moniliophthora_perniciosa_FA553 Moniliophthora_perniciosa_FA553 XM_002393313 NA Mondego,J.M.,_Carazzolle,M.F.,_Costa,G.G.,_Formighieri,E.F.,_Parizzi,L.P.,_Rincones,J.,_Cotomacci,C.,_Carraro,D.M.,_Cunha,A.F.,_Carrer,H.,_Vidal,R.O.,_Estrela,R.C.,_Garcia,O.,_Thomazella,D.P.,_de_Oliveira,B.V.,_Pires,A.B.,_Rio,M.C.,_Araujo,M.R.,_de_Moraes,M.H.,_Castro,L.A.,_Gramacho,K.P.,_Goncalves,M.S.,_Neto,J.P.,_Neto,A.G.,_Barbosa,L.V.,_Guiltinan,M.J.,_Bailey,B.A.,_Meinhardt,L.W.,_Cascardo,J.C._and_Pereira,G.A. NA 0:>962 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002493639).COMPLETENESS:_incomplete_on_both_ends. NA 28-MAY-2009 Moniliophthora_perniciosa_FA553_hypothetical_protein_(MPER_06922)_mRNA,_partial_cds. NA Marasmiaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Moniliophthora_perniciosa_E2LJW7_MONPE.gb Moniliophthora 238593998 BMC_Genomics_9,_548_(2008) fungi XM_002393313 NA NA gill_mushrooms basidiomycetes 19019209 962 NA mRNA NA FA553 NA Moniliophthora_perniciosa NA forward Agaricomycetidae NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 554373 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Agaricomycetidae,_Agaricales,_Marasmiaceae,_mitosporic_Marasmiaceae,_Moniliophthora A_genome_survey_of_Moniliophthora_perniciosa_gives_new_insights_into_Witches_Broom_Disease_of_cacao NA XM_002393313.1 ATGTATGGTGTCGAGTTGATGATTATCATCATCACCACCTTTGCTCAGGCGCTGTCAGGTAATGGGCACGCCGTAGGCATAATCGGTGTCCTTGTCGTTTGGCGTTTCTTGATGGGCATCGGAATTGGTGGTGACTATCCTTTATCCGCCGTCATCTCCTCCGAATTTGCCTCCACCAGAATTCGTGGACGGATGATGAATGCCGTATTCGCGTCGCAGGGATGGGGTAACTTTGGTTTTGGAACAGCTGCTGCCCTCGTCGCCTTCATCATTACGGCTGCGTACAAGAGTTCTATTCTTGCCGACTCGGCCAGCACTCACTGGGACAGTGTCGATCAAATGTGGCGCATTCTGATCGGCCTTGGATGCGTTCCAGGAGTCGTTGCTCTGTACTTCCGTCTGACCATTCCTGAGACGCCTCGTTTCACCATGGATATCGAGCGCAACATTGCGCAGGCTTCCAAGGATATTGAAGGCATCCTCACCACCGGCAAGTCCTCAGTCGACCCCGACGCTGTTGTTCAGAAAGTCGAAGCTCCACGCGCTAGCTGGGCAGACTTTTCTGCACACTTCTCCAAGTGGGAAAACTTCAAGGTTCTCTTCGGTTGTGCATACTCTTGGTTTGCTCTCGATATTGCCTTTTACGGTCTCGGTTTGAACTCGAGTATCATTCTCGGCGCCATCGGCTTCGGTACCCCTCCCACTGCTGGTGCCCAAGGGGTGTATGACAACTTGAAAAACATTTGTGTGGGAAACCTCATCCTTTCTGCTGCCGGTCTTATTCCCGGATACTGGGTCTGCTTCCTCTTCGTTGATTCGTGGGGCAGGAAGCCTATCCAGCTCATGGGCTTTATAGCTCTTACAGTTCTCTTCATCATCATGGGCTTCGGCTATGATGCTCTCACTAAGACCCCAGGTGCCACAAAGGCCTTCGTGTTCCTTTACTGGGGATCGTTTCCTAT > 695 MucpaDRAFT_5552 COGs:_COG2814_Arabinose_efflux_permease;_InterPro_IPR005828:IPR016196:IPR005829;_KEGG:_pfl:PFL_4804_dicarboxylate_MFS_transporter;_PFAM:_General_substrate_transporter;_SPTR:_Q4K798_Dicarboxylate_MFS_transporter;_PFAM:_Sugar_(and_other)_transporter;_TIGRFAM:_metabolite-proton_symporter General_substrate_transporter EFQ72775.1 11 MTQKPALSEQPEAIGHRLKSIFGGSIGNLVEWYDWYVYSAFSLYFAGSFFPKGSETAQLLNTAGIFAIGFLMRPIGGWVMGVYADRKGRKAALTLSVLLMSAGSLLIAIVPGYQRIGIAAPVILVLARIIQGLSVGGEYGTSATYLSEMATKKHRGFYSSFQYVTLIMGQLLALGVLVLLQRYFLSQQQLHSWGWRIPFGIGAVLAVSAMYLRRNLLETESFNKVNQGNPNRGTMKALMEHPKAVMMVIGLTMGGTVAFYTFSTYMQKFLVNTSGFSKNDATLISTLTLLVFMLVQPLFGLLSDKIGRKPLLITFGILGSVATIPIMTALSKTHQLWPAFGLIMLALLITSLYTSINAVVKAELFPVNVRALGVGFPYAIAVSVFGGSAEYLALLFKDEGHADWFYWYVTACIGISLIVYASMNDTKKYSRMEED not_Sphingobacteria_Cavalier-Smith_2002 Mucilaginibacter_paludis_DSM_18603 Mucilaginibacter_paludis_DSM_18603 AEIH01000169 3670..4977 Lucas,S.,_Han,J.,_Lapidus,A.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Peters,L.,_Kyrpides,N.,_Mavromatis,K.,_Ivanova,N.,_Mikhailova,N.,_Held,B.,_Detter,J.C.,_Tapia,R.,_Han,C.,_Land,M.,_Hauser,L.,_Markowitz,V.,_Cheng,J.-F.,_Hugenholtz,P.,_Woyke,T.,_Wu,D.,_Tindall,B.,_Brambilla,E.,_Klenk,H.-P._and_Eisen,J.A. NA 0:1308 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4087662Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_Cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-PGF_and_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Mucilaginibacter_paludis_TPT56,_DSM_18603collection_date_::_Missinglat_lon_::_56.51_82.5depth_::_Missingalt_elev_::_Missingcountry_::_Russiaenvironment_::_Rice_paddiesnum_replicons_::_1ref_biomaterial_::_DSM_18603,_ATCC_BAA-1394,_VKM_B-2446biotic_relationship_::_Free_livingtrophic_level_::_Heterotrophrel_to_oxygen_::_Facultativeisol_growth_condt_::_17911309sequencing_meth_::_WGSassembly_::_Newbler_v._2.3_(pre-release)finishing_strategy_::_Noncontiguous_FinishedGOLD_Stamp_ID_::_Gi04513Type_Strain_::_YesFunding_Program_::_DOE-GEBA_2009Gene_Calling_Method_::_Prodigal_1.4,_GenePRIMPIsolation_Site_::_the_acidic_Sphagnum_peat_bog_Bakchar,_in_western_Siberia,_RussiaSource_of_Isolate_::_sample_collected_from_10-20_cm_below_the_surface_of_the_Sphagnum_peat_bog_BakcharCell_Shape_::_Rod-shapedMotility_::_NonmotileTemperature_Range_::_PsychrotolerantTemperature_Optimum_::_20CpH_::_4.2_-_8.2Gram_Staining_::_Gram-Diseases_::_None##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_Noncontiguous_FinishedCurrent_Finishing_Status_::_Noncontiguous_FinishedAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_30xSequencing_Technology_::_454;_Illumina##Genome-Assembly-Data-END## NA 05-NOV-2010 Mucilaginibacter_paludis_DSM_18603_Mpal_Contig00209,_whole_genome_shotgun_sequence. NA Sphingobacteriaceae_Steyn_et_al._1998 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mucilaginibacter_paludis_E3B463_9SPHI.gb Mucilaginibacter_Pankratov_et_al._2007_emend._Urai_et_al._2008 311295605 Unpublished NA AEIH01000169 NA NA Sphingobacteriales Cytophaga-Flexibacter-Bacteroides_phylum NA 1308 NA genomic_DNA NA DSM_18603 NA Mucilaginibacter_paludis_Pankratov_et_al._2007 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 714943 Bacteria,_Bacteroidetes,_Sphingobacteriia,_Sphingobacteriales,_Sphingobacteriaceae,_Mucilaginibacter The_permanent_draft_genome_of_Mucilaginibacter_paludis_DSM_18603 NA AEIH01000169.1 TTAATCTTCTTCCATCCTCGAGTACTTTTTGGTATCGTTCATACTGGCGTATACGATCAATGATATGCCAATACAGGCGGTAACATACCAGTAGAACCAGTCGGCATGGCCTTCGTCCTTAAAAAGCAGAGCCAGGTACTCGGCGCTGCCGCCAAATACGGATACCGCTATAGCATACGGAAAACCTACACCCAGGGCCCGCACATTTACCGGGAAAAGCTCGGCCTTAACCACGGCGTTAATGGAAGTATATAAACTGGTGATGAGCAACGCCAACATAATCAGTCCGAACGCGGGCCATAGCTGATGAGTTTTGCTTAAGGCTGTCATGATGGGGATGGTTGCCACTGATCCTAATATTCCGAAAGTGATCAATAAGGGCTTGCGACCTATTTTATCAGATAGCAGACCAAATAAGGGCTGCACCAGCATAAACACCAGCAAGGTTAGGGTTGAAATAAGCGTTGCATCATTTTTGCTGAAGCCAGACGTATTGACCAGGAACTTTTGCATATAAGTGCTAAAAGTATAAAACGCTACTGTACCGCCCATGGTTAAGCCAATCACCATCATTACCGCCTTAGGGTGTTCCATCAGGGCCTTCATCGTTCCGCGGTTGGGGTTACCTTGGTTTACTTTATTGAAGGATTCGGTTTCGAGCAAATTGCGCCGCAAATACATAGCAGATACTGCCAGCACGGCCCCTATACCAAATGGAATGCGCCAGCCCCAGCTATGGAGCTGTTGTTGCGATAAAAAGTAACGCTGTAATAATACCAGCACGCCTAAAGCCAGCAATTGGCCCATAATTAATGTAACATACTGAAAGCTGGAATAAAAGCCGCGATGCTTTTTAGTGGCCATTTCGCTGAGGTAGGTAGCGCTGGTACCGTACTCGCCGCCTACGCTAAGGCCCTGTATAATGCGGGCCAGTACTAAAATAACAGGTGCCGCAATGCCGATGCGCTGATATCCGGGTACGATGGCTATCAACAACGAACCGGCGCTCATTAACAATACCGATAAAGTGAGGGCGGCCTTTCGGCCCTTACGGTCGGCATACACGCCCATCACCCAGCCGCCTATGGGCCGCATTAAAAAGCCTATGGCAAATATGCCTGCGGTGTTCAATAACTGAGCCGTCTCGCTCCCCTTCGGAAAAAACGAACCTGCAAAGTACAGCGAGAATGCCGAATAAACATACCAGTCGTACCATTCGACCAAATTGCCTATGGAGCCGCCAAAAATAGATTTTAAACGATGGCCGATAGCCTCGGGCTGCTCTGAAAGTGCTGGTTTTTGCGTCAT > 696 MAV_4814 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 metabolite/sugar_transport_protein YP_883939.1 11 MVIIALVAAISGMLYGYDTGVISWALLQLTQDFNITEGWQQVIAASILLGAVAGALTCSWLSDLRGRRGTLLMLAVVFIVGALWCADAADSVMLSLGRLVLGFAVGGATQTAPMYVAELAPPAYRGRLVLCFQIAIGVGILTATLVGAGGSISWRGPIGLACVPAAIMLWLLLRLPESPRWLVKKDNRDAARAVLEHVRPEGYDVAAELDEATELARVERTAATRGWRGLRDAWVRPALVLGCGIAVFTQLSGIEMIIYYSPTILTDDGVYRSVALQVSVCLGAAYLIAQLVGLAIIDRVGRRRLTLIMVPGAAISLFALGLLFITSDSGRDVIPYIMICLIAFMLFNGGGLQLMGWLTGSETYPLAVRPAATALQSATLWGTNLVITLTMLSLIKAIGVGPSMWLYALFNVAAWIFVFFRMPDLTGKTLEEIEYQLSEGKFRPSDFGR high_GC_Gram+ Mycobacterium_avium_104 Mycobacterium_avium_104 NC_008595 4942305..4943654 NA NA 0:1350 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000479.Source_DNA/bacteria_is_available_from_Dr._William_Bishai,_JohnsHopkins_School_of_Medicine,_email:_wbishai1@jhmi.edu.COMPLETENESS:_full_length. NA 30-JUN-2011 Mycobacterium_avium_104,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_avium_A0QM01_MYCA1.gb Mycobacterium_Lehmann_and_Neumann_1896 118462219 Submitted_(29-NOV-2006)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_008595 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1350 NA genomic_DNA NA 104 NA Tuberculose_des_oiseaux NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 243243 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium,_Mycobacterium_avium_complex_(MAC) Direct_Submission NA NC_008595.1 TCAGCGGCCGAAGTCCGACGGCCGGAATTTCCCCTCGGACAGCTGGTATTCGATCTCCTCAAGGGTTTTGCCCGTGAGGTCGGGCATGCGGAAGAACACGAAGATCCAGGCCGCCACGTTGAACAACGCGTAGAGCCACATCGAGGGGCCGACCCCGATCGCCTTGATGAGCGACAGCATCGTCAAGGTGATCACCAGGTTGGTCCCCCACAGGGTGGCCGACTGCAGGGCGGTGGCCGCCGGTCGCACCGCCAGCGGATAGGTCTCCGAGCCGGTCAGCCAGCCCATCAACTGCAGGCCGCCGCCGTTGAACAACATGAAGGCGATCAGGCAGATCATGATGTAGGGGATCACGTCGCGACCGCTGTCGCTGGTGATGAACAGCAGGCCCAGCGCGAACAGGCTGATCGCCGCGCCCGGCACCATGATGAGGGTGAGCCGGCGCCGGCCGACCCGGTCGATGATGGCCAACCCGACCAGCTGGGCGATCAGGTACGCCGCGCCCAGACACACCGACACCTGCAGCGCCACGGACCGGTACACGCCGTCGTCGGTCAGGATGGTCGGCGAGTAGTAGATGATCATCTCGATGCCGCTGAGCTGGGTGAACACCGCGATACCGCAACCGAGGACCAGGGCCGGGCGGACCCAGGCGTCGCGCAGCCCGCGCCACCCGCGGGTGGCGGCCGTGCGTTCGACGCGGGCGAGTTCGGTGGCCTCATCCAGCTCGGCGGCCACGTCGTAGCCCTCGGGCCGGACGTGTTCCAGCACGGCGCGGGCGGCGTCTCGGTTGTCCTTTTTGACCAGCCAGCGCGGACTTTCCGGGAGGCGCAGCAGCAGCCACAGCATGATCGCCGCGGGCACGCAGGCGAGGCCGATCGGCCCCCGCCAGGAGATCGAGCCGCCGGCCCCGACCAGGGTGGCGGTGAGGATGCCCACCCCGATGGCGATCTGGAAGCACAGCACCAACCGTCCCCGGTAGGCCGGCGGCGCCAGCTCGGCGACATACATCGGCGCCGTCTGCGTCGCGCCCCCGACCGCGAACCCCAGCACCAGCCGGCCCAGCGACAGCATCACGGAATCTGCGGCGTCGGCGCACCACAACGCGCCGACGATGAACACCACCGCCAGCATCAACAGCGTGCCACGCCGGCCGCGCAGGTCGGAGAGCCAGCTGCACGTCAGCGCCCCGGCGACGGCGCCGAGCAGGATGCTGGCGGCGATCACCTGCTGCCAGCCCTCGGTGATGTTGAAGTCCTGCGTGAGCTGCAGCAGGGCCCAGGAGATGACGCCGGTGTCGTAGCCGTAGAGCATGCCCGAGATCGCGGCGACCAGCGCGATGATCACCAC > 697 BCG_1941c NA sialic_acid-transport_integral_membrane_protein_nanT YP_978031.1 11 MAAPRLTGDQRNAFMASFLGWTMDAFDYFLVVLVYADIATTFHHTKTDVAFLTTATLAMRPVGALLFGLWADRVGRRVPLMVDVSFYSVIGFLCAFAPNFTVLVILRLLYGIGMGGEWGLGAALSMEKVPAERRGVFSGLLQEGYAFGYLLASVAALVVMNWLGLSWRWLFGLSIIPALISLIIRYRVKESEVWEAAQDRMRLTKTRIRDVLGNPAIVRRFVYLVLLMTAFNWMSHGTQDVYPTFLTATTDHGAGLSSLTARWIVVIYNIGAIIGGLAFGTLSQRFSRRYTIVFCAALGLPIVPLFAYSRTAAMLCLGSFLMQVFVQGAWGVIPAHLTEMSPDAIRGVYPGVTYQLGNLLAAFNLPIQERLAESHGYPFALAATIVPVLLVVAVLTAIGKDATGIRFGTTETAFLVRHRNRH high_GC_Gram+ Mycobacterium_bovis_BCG_str._Pasteur_1173P2 Mycobacterium_bovis_BCG_str._Pasteur_1173P2 NC_008769 2150036..2151304 Brosch,R.,_Gordon,S.V.,_Garnier,T.,_Eiglmeier,K.,_Frigui,W.,_Valenti,P.,_Dos_Santos,S.,_Duthoy,S.,_Lacroix,C.,_Garcia-Pelayo,C.,_Inwald,J.K.,_Golby,P.,_Garcia,J.N.,_Hewinson,R.G.,_Behr,M.A.,_Quail,M.A.,_Churcher,C.,_Barrell,B.G.,_Parkhill,J._and_Cole,S.T. NA 0:1269 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM408590.COMPLETENESS:_full_length. NA 26-JAN-2012 Mycobacterium_bovis_BCG_str._Pasteur_1173P2_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_bovis_A1KJW7_MYCBP.gb Mycobacterium_Lehmann_and_Neumann_1896 121635883 Proc._Natl._Acad._Sci._U.S.A._104_(13),_5596-5601_(2007) NA NC_008769 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 17372194 1269 NA genomic_DNA NA BCG_Pasteur_1173P2 NA Mycobacterium_tuberculosis_var._bovis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 410289 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium,_Mycobacterium_tuberculosis_complex Genome_plasticity_of_BCG_and_impact_on_vaccine_efficacy NA NC_008769.1 CTAATGTCGATTTCGATGACGAACAAGAAAAGCAGTTTCCGTAGTACCAAAGCGGATTCCGGTGGCATCCTTGCCAATCGCCGTCAGCACCGCTACGACCAATAGCACGGGCACGATCGTCGCGGCCAAGGCGAAGGGGTAGCCATGGGATTCGGCCAGACGCTCTTGAATAGGAAGGTTGAACGCCGCCAGCAGATTACCGAGCTGGTAGGTTACGCCGGGGTAGACGCCCCGGATAGCGTCTGGCGACATCTCGGTCAGATGCGCGGGGATCACACCCCAGGCACCCTGTACGAAGACTTGCATCAAAAACGAACCCAGGCACAACATCGCCGCAGTGCGCGAGTAAGCGAACAGCGGCACGATCGGCAGTCCCAGCGCCGCACAGAAAACGATGGTGTAACGGCGGCTGAACCGCTGGGACAACGTGCCGAACGCCAGACCGCCGATGATGGCGCCGATGTTGTAGATCACCACTATCCACCTGGCGGTCAGGCTGGACAAACCGGCACCATGATCGGTAGTCGCGGTCAGGAAGGTCGGGTAGACATCCTGGGTGCCGTGGCTCATCCAGTTGAAGGCGGTCATCAACAGCACTAGGTAGACAAACCGGCGCACAATTGCGGGGTTACCCAGGACATCGCGGATTCGGGTCTTGGTGAGCCGCATGCGGTCCTGCGCGGCTTCCCAGACTTCGGATTCCTTTACCCGGTACCGGATGATCAAGCTGATCAGAGCCGGGATGATGCTTAGGCCGAACAACCACCGCCACGACAGCCCTAGCCAGTTCATCACCACCAGCGCTGCCACACTGGCCAGCAGATAGCCGAACGCGTAGCCCTCCTGCAGCAGCCCGGAGAAGACGCCACGCCGCTCGGCTGGAACCTTCTCCATGGACAGCGCGGCACCCAGCCCCCACTCTCCGCCCATGCCAATGCCGTAGAGCAGTCGCAGGATCACCAGCACGGTGAAGTTGGGTGCGAATGCGCACAGAAATCCGATCACCGAATAGAACGACACGTCGACCATCAGCGGGACCCGCCGGCCCACCCGGTCGGCCCATAGCCCGAACAGCAACGCACCCACGGGGCGCATGGCCAGGGTGGCGGTGGTGAGAAACGCGACGTCGGTCTTGGTGTGGTGGAAGGTCGTTGCGATGTCGGCATAGACCAGCACCACGAGAAAGTAATCGAACGCATCCATCGTCCAACCCAAGAAAGATGCCATAAAAGCGTTTCGCTGGTCGCCGGTCAACCGCGGTGCTGCCAC > 698 JTY_1236 NA transferase YP_002644292.1 11 MSTVTGAAGIGLATLAADGSVLDTWFPAPELTESGTSATSRLAVSDVPVELAALIGRDDDRRTETIAVRTVIGSLDDVAADPYDAYLRLHLLSHRLVAPHGLNAGGLFGVLTNVVWTNHGPCAIDGFEAVRARLRRRGPVTVYGVDKFPRMVDYVVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGLGISLGDDCVVEAGLYVTAGTRVTMPDSNSVKARELSGSSNLLFRRNSVSGAVEVLARDGQGIALNEDLHAN high_GC_Gram+ Mycobacterium_bovis_BCG_str._Tokyo_172 Mycobacterium_bovis_BCG_str._Tokyo_172 NC_012207 1345547..1346824 Seki,M.,_Honda,I.,_Fujita,I.,_Yano,I.,_Yamamoto,S._and_Koyama,A. NA 1274:>1278 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AP010918.COMPLETENESS:_full_length. NA 25-JAN-2012 Mycobacterium_bovis_BCG_str._Tokyo_172,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_bovis_C1AMJ4_MYCBT.gb Mycobacterium_Lehmann_and_Neumann_1896 224988383 Vaccine_27_(11),_1710-1716_(2009) NA NC_012207 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 19200449 1278 NA genomic_DNA NA Tokyo_172 NA Mycobacterium_tuberculosis_var._bovis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 561275 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium,_Mycobacterium_tuberculosis_complex Whole_genome_sequence_analysis_of_Mycobacterium_bovis_bacillus_Calmette-Guerin_(BCG)_Tokyo_172:_a_comparative_study_of_BCG_vaccine_substrains NA NC_012207.1 ATGAAGCGGGTTGCGCTGGCATGTCTTGTCGGCTCGGCGATCGAATTCTACGACTTCCTTATCTACGGCACCGCTGCGGCGCTGGTGTTTCCCACCGTGTTCTTCCCACACCTGGATCCCACGGTGGCCGCCGTGGCCTCGATGGGGACATTTGCTGTGGCGTTCCTATCCCGGCCGTTCGGCGCGGCCGTCTTTGGATACTTTGGAGACCGCCTCGGCCGCAAGAAGACCCTGGTCGCCACACTGTTGATCATGGGCCTGGCAACCGTGACTGTCGGGCTGGTTCCAACGACAGTGGCCATCGGCGCCGCGGCCCCACTGATCCTGACGACCATGCGGCTGCTGCAAGGGTTCGCGGTCGGCGGCGAGTGGGCCGGTTCGGCGCTGCTGAGCGCCGAGTACGCGCCCGCCAGCAAACGTGGCTGGTACGGGATGTTCACCGTTGTGGGTGGCGGCATCGCGCTGGTACTGACCAGCCTGACCTTTCTGGGCGTGAACTACACCATTGGCGAAAGCAGCCCCACATTCATGCAGTGGGGGTGGCGCATACCGTTTCTGGTCAGTGCGGCGCTGATCGCCGTCGCCCTATACGTGCGGTTCAACATCGACGAGACCCCGGTGTTCGCCCGGGAAAGGGCAGACGAAAAAACCCGTTTGGGCCCAGCCGAAACGCCGATTGCCCAAGTACTGCGGCGGCAGCGGCGAGAGATAGTCTTGGCCGCCGGCAGCGCCGTTTGCTGCTTCGGCTTCGTCTACCTGGCCAGCACTTACTTGGCCAGCTACGCTCAAACCCGACTGGGGTATTCGCGCGGCAGCATCCTGTTCGACAGTGTGCTGGGTGGACTGCTGTGCATCGTGTTCACCGCGCTTTCTTCCGCTCTTTGCGACCAACTCGGGCGCCGCCGCGTCCTATTGGCCGGGTGGGCGGTGGCTCTACCCTGGTCGCTGTTGGTCATGCCGCTGATCGACTCCGGCAGCCCCAGTTTGTTCGCGGTGGCTGTCGTCGGCATGTATGCCATCGGCGGATTCGGTTTCGGACCCACGGCATCGTTCATCCCAGAACTGTTTGCTACTAGCTACCGATACACGGGCAGCGCGCTCGCGGCGAATCTCGCTGGGGTTGCCGGCGGCGCGCTACCGCCGGTGATTGCCGGCGCGCTGGTGGCAACCTATGGCAGCTGGGCGATCGGTGTCATGCTGGCCATCCTCGCGTTGATCAGCCTGGTATGCACCTATCGGTTGCCCGAAACCGCCGGATCGGCCCTCGTCAGCCGCTAG > 699 MMAR_2574 involved_in_active_transport_of_unknown_sugars_across_the_membrane._responsible_for_the_translocation_of_the_substrate_across_the_membrane sugar_transporter YP_001850875.1 11 MSARAQTGTISTHVPARLDRLPWGRFHWRVVIGLGGVWVLDGLEVTMVGNVSARLTEHGSGINLTPAQIGVAASFYIAGACLGALFFGHLTDRFGRRNLFLLTLAVYLTATVATAFAFAPWYFFIARFFTGSGIGGEYAAINSAIDELIPARVRGRVDLIINGTYWLGSAAGAAGALVLLDTSNFAPNMGWRLAFGLGAIFGIFVLLVRRNVPESPRWLFIHGREQEAEQIVREIEEEVERDTGQRLPDPPGRPLKIRQRQRISLWEIARVAFTRYPRRAFLGLALFIGQAFLYNGVTFNLGTLLSGFYGVESGHVPLFFIVWALSNFVGPLVLGRLFDTVGRKPMITMSYIGSAVIAVVLAVIFVNQTGGVWTFIIVLAAAFFLASAGASAAYLTVSEIFPMETRALAIAFFYAVGTAIGGISGPLLFGQLIESGQRSQVFWSFIIGAAVMAVAGLVELWLGIAAEQRPLEELALPLTVADAEDDDEPADGAGARGAQHPGS high_GC_Gram+ Mycobacterium_marinum_M Mycobacterium_marinum_M NC_010612 3126382..3127893 Stinear,T.P.,_Seemann,T.,_Harrison,P.F.,_Jenkin,G.A.,_Davies,J.K.,_Johnson,P.D.,_Abdellah,Z.,_Arrowsmith,C.,_Chillingworth,T.,_Churcher,C.,_Clarke,K.,_Cronin,A.,_Davis,P.,_Goodhead,I.,_Holroyd,N.,_Jagels,K.,_Lord,A.,_Moule,S.,_Mungall,K.,_Norbertczak,H.,_Quail,M.A.,_Rabbinowitsch,E.,_Walker,D.,_White,B.,_Whitehead,S.,_Small,P.L.,_Brosch,R.,_Ramakrishnan,L.,_Fischbach,M.A.,_Parkhill,J._and_Cole,S.T. NA 0:1512 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000854.DNA_and_bacteria_are_available_from_Dr_Lalita_Ramakrishnan,lalitar@u.washington.edu.COMPLETENESS:_full_length. NA 01-DEC-2011 Mycobacterium_marinum_M_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_marinum_B2HRZ0_MYCMM.gb Mycobacterium_Lehmann_and_Neumann_1896 183980035 Genome_Res._18_(5),_729-741_(2008) NA NC_010612 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 18403782 1512 NA genomic_DNA NA M NA not_"Mycobacterium_marinum"_Suzanne_and_Penso_1953 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 216594 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium Insights_from_the_complete_genome_sequence_of_Mycobacterium_marinum_on_the_evolution_of_Mycobacterium_tuberculosis NA NC_010612.1 ATGAGCGCACGCGCGCAAACCGGGACCATCTCGACGCACGTACCTGCACGGCTGGACCGGTTGCCGTGGGGACGATTCCACTGGCGCGTCGTGATCGGGCTTGGCGGCGTGTGGGTCCTCGACGGGCTCGAAGTCACCATGGTCGGCAACGTGTCGGCGCGGCTGACCGAGCACGGCAGCGGGATCAACCTGACGCCCGCGCAGATCGGCGTGGCGGCGTCGTTCTACATCGCCGGGGCCTGCCTGGGGGCACTGTTTTTCGGCCACCTCACCGACCGCTTCGGGCGGCGCAACCTGTTTCTGTTGACCCTCGCGGTGTACCTGACGGCCACCGTGGCCACCGCATTCGCCTTCGCACCTTGGTATTTCTTCATCGCGCGTTTCTTCACCGGCTCCGGCATCGGGGGAGAGTACGCCGCGATCAACTCGGCGATCGACGAACTGATACCCGCCCGCGTGCGCGGCCGCGTTGACCTGATCATCAACGGCACCTATTGGCTGGGTTCGGCCGCTGGAGCGGCCGGGGCGCTGGTCCTGTTGGACACCTCGAACTTCGCGCCCAACATGGGGTGGCGGCTTGCCTTCGGCTTGGGTGCCATCTTCGGCATCTTTGTGCTGCTGGTCCGGCGCAACGTCCCGGAAAGCCCACGCTGGCTGTTCATCCACGGGCGTGAGCAGGAAGCCGAGCAGATCGTTCGGGAGATCGAGGAGGAAGTAGAACGCGACACCGGCCAGCGGTTACCTGACCCGCCGGGGCGGCCGCTCAAGATACGTCAGCGTCAAAGGATTTCCTTGTGGGAGATCGCCCGGGTCGCGTTTACCCGCTATCCGCGGCGGGCCTTTCTTGGGCTGGCGCTGTTCATCGGTCAAGCGTTCCTCTACAACGGGGTCACGTTCAATCTCGGCACGTTGCTAAGCGGCTTCTACGGTGTCGAATCCGGACACGTGCCGCTGTTTTTCATCGTGTGGGCGCTGAGCAACTTTGTCGGGCCCCTGGTGCTGGGGCGACTCTTCGATACCGTCGGCCGCAAGCCCATGATCACGATGTCCTACATCGGATCCGCGGTGATAGCCGTGGTGCTCGCGGTGATATTTGTGAACCAGACCGGCGGTGTCTGGACATTCATCATCGTGTTGGCGGCGGCGTTCTTCCTGGCATCGGCGGGCGCGAGCGCGGCCTACCTGACGGTCAGCGAGATCTTCCCGATGGAGACCCGAGCCCTGGCCATCGCCTTCTTCTACGCGGTGGGCACCGCGATCGGCGGCATCAGCGGCCCGCTGCTGTTCGGTCAGCTGATCGAGTCCGGGCAGCGTAGCCAGGTGTTCTGGTCGTTCATCATCGGTGCCGCGGTGATGGCCGTGGCCGGCCTGGTCGAACTCTGGCTCGGCATCGCCGCCGAACAGCGCCCGCTGGAAGAGTTGGCGCTGCCGCTGACGGTGGCCGACGCCGAGGACGACGACGAACCGGCCGATGGGGCGGGCGCGCGGGGCGCGCAGCACCCCGGGAGCTGA > 700 MSMEG_2004 NA arabinose-proton_symporter YP_886368.1 11 MTPPTGGSVKAVAISIAAAVGGFLFGFDSSVINGAVGAITAHFALTPLMAGLTVASALLGCAVGAWFAGGIADRIGRVRVMGVAAVLFAVSSVGSGLAFSAFDLMAWRITAGVAIGIASVIAPAYIAEIAPARIRGALTALQQLALVIGIFVSLLSDAALASVAGGAANTSWFGVEAWRWMLLVGLVPAVVYAIIARRIPESPRYLARRGEYESAAAVLSRVLDVSIDDARRKVDQIWLFAVEGVEVVGASVPG high_GC_Gram+ Mycobacterium_smegmatis_str._MC2_155 Mycobacterium_smegmatis_str._MC2_155 NC_008596 2085076..2085840 NA NA 0:765 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000480.Source_DNA/bacteria_is_available_from_William_R._Jacobs,_Jr.,_Ph.D.email:_jacobsw@hhmi.org.COMPLETENESS:_full_length. NA 21-JAN-2012 Mycobacterium_smegmatis_str._MC2_155_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_smegmatis_A0QTY0_MYCS2.gb Mycobacterium_Lehmann_and_Neumann_1896 118467340 Submitted_(29-NOV-2006)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_008596 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 765 NA genomic_DNA NA MC2_155 NA Mycobacterium_smegmatis_(Trevisan_1889)_Lehmann_and_Neumann_1899 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 246196 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium Direct_Submission NA NC_008596.1 CTATCCCGGCACCGACGCGCCGACGACCTCTACACCCTCAACTGCGAAGAGCCAGATTTGGTCGACCTTGCGTCGTGCGTCATCGATGGATACGTCGAGAACACGCGACAGGACTGCTGCGGCCGACTCGTATTCGCCGCGCCGGGCCAGATAGCGCGGCGACTCGGGGATTCGTCGCGCGATGATCGCGTACACGACGGCTGGCACCAGACCCACGAGCAACATCCATCGCCAGGCTTCCACGCCGAACCAGGACGTATTGGCGGCGCCACCTGCCACGGACGCCAACGCGGCATCGGAAAGCAGTGAGACGAAGATGCCGATGACCAGTGCCAATTGTTGCAGCGCGGTCAACGCACCCCGAATGCGCGCCGGGGCGATCTCGGCGATGTATGCCGGTGCGATCACCGAGGCAATGCCGATCGCGACCCCGGCCGTGATTCGCCAAGCCATCAGATCGAAGGCAGAAAAGGCCAGACCGGACCCGACCGAACTCACGGCGAAGAGCACTGCGGCGACACCCATCACGCGCACCCGGCCGATGCGGTCGGCGATGCCGCCTGCGAACCAAGCACCAACCGCACATCCCAGCAGAGCGCTGGCCACCGTAAGACCGGCCATCAGTGGGGTCAGTGCGAAGTGAGCAGTTATCGCTCCTACGGCACCGTTGATGACGCTGGAGTCGAAACCGAACAGGAAGCCACCCACAGCCGCGGCGATCGAGATGGCGACCGCCTTCACGGACCCGCCGGTCGGCGGGGTCAC > 701 MSMEG_3421 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 inner_membrane_metabolite_transporter_YdfJ YP_887725.1 11 MADQHPSAEAARGSDDPEYARNLKRATLAASVGSALEYYDFALYSLASALIFGEIFFPALGASAGTVASLATLAIGFVARPVGGLFFGALGDRLGRKWVLMLTIALMGGSSTLIGVLPTGEQVGALAPILLVVLRIAQGFGAGAEQAGATTLMAEYSPVRRRGFYSALPFVGIMLGTLLASAVFVGLGQVPDDALLGWVWRIPFLASIFLIGVAVLIRLRLKESPTFVTLEKRDQVSQKPFRELLQSSRPTVWRGIGLRMAENGGSYIYQTLSITYVSALGVQKSVGPLAVAIGAVIGFFVIPFAGSLSDRFGRMRVYRVGAVIQLVLAAVAWPLLSLGNPVLTVVVIAIAYGVGVNVMLGAQCAALPELFGSRHRYIGVAVSREFSAIIAGGIAPFVGALLLSWFNNSWVPLAAYVIILTLITLYATLRTPETRARDLTLLTNADGDSESEIAARPEPLAQSYRNDAAAVVGR high_GC_Gram+ Mycobacterium_smegmatis_str._MC2_155 Mycobacterium_smegmatis_str._MC2_155 NC_008596 3491964..3493388 NA NA 0:1425 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000480.Source_DNA/bacteria_is_available_from_William_R._Jacobs,_Jr.,_Ph.D.email:_jacobsw@hhmi.org.COMPLETENESS:_full_length. NA 21-JAN-2012 Mycobacterium_smegmatis_str._MC2_155_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_smegmatis_A0QXT7_MYCS2.gb Mycobacterium_Lehmann_and_Neumann_1896 118467340 Submitted_(29-NOV-2006)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_008596 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1425 NA genomic_DNA NA MC2_155 NA Mycobacterium_smegmatis_(Trevisan_1889)_Lehmann_and_Neumann_1899 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 246196 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium Direct_Submission NA NC_008596.1 TCACCGTCCCACGACCGCGGCGGCATCGTTGCGGTAGGACTGCGCCAAAGGCTCTGGGCGGGCGGCGATCTCGGACTCGCTGTCGCCGTCGGCGTTGGTCAGCAAGGTGAGGTCGCGTGCTCGGGTCTCGGGCGTGCGCAATGTCGCGTAGAGGGTGATAAGCGTCAAGATGATGACGTAGGCCGCCAGCGGAACCCACGAATTGTTGAACCAGCTGAGCAGGAGCGCACCGACGAACGGAGCGATGCCGCCTGCGATGATGGCACTGAACTCGCGGCTGACCGCGACCCCGATGTACCGATGCCGTGATCCGAAAAGCTCTGGCAGTGCGGCGCATTGGGCACCGAGCATCACGTTGACACCGACACCGTATGCGATCGCGATGACGACGACAGTGAGCACGGGGTTGCCCAGTGACAGCAGTGGCCATGCGACGGCGGCGAGTACCAACTGGATGACCGCGCCTACGCGGTAGACCCTCATGCGGCCGAATCTGTCCGACAGCGATCCTGCGAACGGGATGACGAAGAAGCCGATCACCGCGCCGATCGCGACCGCCAATGGACCGACGGACTTCTGCACGCCCAGCGCGCTCACGTAGGTGATGCTCAGGGTTTGATAGATGTACGAGCCGCCGTTCTCCGCCATCCGCAGACCAATACCTCGCCACACGGTGGGCCGTGACGACTGCAGCAACTCGCGGAAAGGCTTCTGGCTGACCTGATCCCGCTTTTCGAGGGTGACGAACGTCGGACTTTCCTTGAGCCGCAGCCGGATCAGCACGGCAACGCCGATGAGGAAGATGGACGCCAGAAACGGGATGCGCCACACCCAGCCGAGCAGCGCATCATCGGGCACCTGGCCCAGACCGACGAACACCGCCGAGGCCAACAACGTCCCGAGCATGATCCCGACGAATGGGAGGGCCGAGTAGAAACCGCGGCGCCGCACCGGGGAGTACTCCGCCATCAACGTGGTGGCGCCGGCCTGTTCGGCCCCGGCGCCGAAGCCCTGTGCGATTCGCAGGACCACCAGAAGGATCGGCGCGAGCGCACCCACCTGTTCACCGGTGGGCAGCACTCCGATCAGCGTGCTGGACCCGCCCATGAGGGCGATCGTGAGCATCAGAACCCACTTGCGGCCGAGTCGGTCACCGAGGGCACCGAAGAAAAGACCTCCGACCGGCCTCGCGACGAAGCCGATCGCGAGCGTCGCGAGGCTGGCGACCGTGCCCGCTGATGCTCCGAGCGCCGGAAAGAAGATCTCGCCGAAGATCAATGCCGATGCGAGCGAGTACAGCGCAAAGTCGTAGTACTCCAGCGCACTGCCGACCGATGCGGCCAGCGTCGCCCGTTTGAGGTTGCGAGCGTACTCGGGATCGTCGCTGCCGCGGGCGGCCTCGGCGGACGGGTGCTGATCAGCCAT > 702 MSMEG_4182 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 arabinose-proton_symporter YP_888461.1 11 MNVIGITLLPRGRIMSHGPVSDDTPSIFGDDDQAASSGRTAVRIAAVAALGGLLFGYDSAVINGAVDSIQEDFGIGNYALGLAVASALLGAAAGALSAGRIADRIGRIAVMKIAAVLFFISAFGTGFAPETVTLVVFRIVGGIGVGVASVIAPAYIAETSPPGIRGRLGSLQQLAIVLGIFTSFVVNWLLQWAAGGPNEVLAMGLDAWRWMFLAMAVPAVLYGALAFTIPESPRYLVATHKIPEARRVLSMLLGQKNLEITITRIRDTLEREDKPSWRDLKKPTGGIYGIVWVGLGLSIFQQFVGINVIFYYSNVLWQAVGFSADQSAIYTVITSVVNVLTTLIAIALIDKIGRKPLLLIGSSGMAVTLATMAVIFANATVKPDGTPDLPGASGLIALIAANLFVVAFGMSWGPVVWVLLGEMFPNRFRAAALGLAAAGQWAANWLITVSFPELRNHLGLAYGFYALCAVLSFLFVSKWVEETRGKNLEDMHAEALGH high_GC_Gram+ Mycobacterium_smegmatis_str._MC2_155 Mycobacterium_smegmatis_str._MC2_155 NC_008596 4258730..4260226 NA NA 0:1497 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000480.Source_DNA/bacteria_is_available_from_William_R._Jacobs,_Jr.,_Ph.D.email:_jacobsw@hhmi.org.COMPLETENESS:_full_length. NA 21-JAN-2012 Mycobacterium_smegmatis_str._MC2_155_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_smegmatis_A0QZX3_MYCS2.gb Mycobacterium_Lehmann_and_Neumann_1896 118467340 Submitted_(29-NOV-2006)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_008596 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1497 NA genomic_DNA NA MC2_155 NA Mycobacterium_smegmatis_(Trevisan_1889)_Lehmann_and_Neumann_1899 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 246196 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium Direct_Submission NA NC_008596.1 TCAGTGCCCCAGCGCTTCGGCGTGCATGTCCTCCAGATTCTTACCCCTGGTCTCCTCGACCCACTTGCTCACGAAGAGGAACGACAGCACCGCACAGAGGGCATAGAAGCCGTAGGCCAGGCCCAGGTGGTTGCGCAGCTCGGGGAAGCTGACGGTGATCAACCAGTTCGCGGCCCACTGCCCGGCCGCCGCCAGGCCCAGCGCGGCCGCACGGAAGCGGTTGGGGAACATCTCCCCCAGCAGCACCCAGACCACCGGCCCCCACGACATACCGAAAGCGACCACGAACAGGTTCGCCGCGATGAGTGCGATCAAGCCGGACGCGCCGGGCAGGTCGGGCGTGCCGTCGGGCTTGACCGTGGCATTGGCGAAGATGACCGCCATGGTGGCCAGCGTGACCGCCATGCCGGACGAGCCGATCAGCAGGAGCGGTTTGCGGCCGATCTTGTCGATCAGCGCGATCGCGATCAACGTCGTCAGCACGTTGACCACCGACGTGATCACGGTGTAGATCGCGGACTGGTCGGCGCTGAAACCGACGGCCTGCCACAGCACATTCGAGTAGTAGAAGATCACATTGATACCGACGAACTGCTGGAAGATCGACAGACCGAGACCGACCCACACGATCCCGTAGATCCCGCCGGTGGGTTTCTTCAGATCACGCCACGACGGTTTGTCCTCGCGCTCAAGGGTGTCGCGGATACGCGTGATGGTGATCTCCAGGTTCTTCTGCCCGAGCAGCATGCTCAGCACCCGGCGTGCTTCTGGGATCTTGTGTGTGGCAACGAGATAACGCGGCGACTCCGGGATGGTGAACGCGAGCGCCCCATACAGGACGGCCGGTACGGCCATGGCCAGGAACATCCAGCGCCATGCGTCGAGTCCCATCGCCAGCACCTCGTTGGGACCGCCCGCCGCCCACTGCAACAGCCAGTTGACGACAAAGGACGTGAAGATGCCCAGCACGATGGCCAGTTGCTGCAGCGATCCGAGGCGTCCCCGGATTCCCGGCGGAGAGGTCTCGGCAATGTAGGCGGGTGCGATCACCGATGCCACACCCACGCCGATACCACCGACGATGCGGAACACCACGAGAGTGACCGTTTCGGGTGCGAAACCCGTTCCGAAGGCGCTGATGAAGAACAAGACGGCGGCGATTTTCATCACCGCGATGCGCCCGATGCGGTCGGCGATACGGCCGGCCGACAGAGCGCCTGCGGCAGCACCCAGCAGCGCCGACGCCACGGCAAGGCCCAGGGCGTAATTGCCGATGCCGAAGTCCTCCTGGATCGAGTCCACGGCACCGTTGATGACGGCGCTGTCGTAGCCGAACAGGAGACCGCCGAGGGCCGCGACCGCCGCGATCCGGACCGCGGTGCGACCGGAGGAGGCCGCCTGATCGTCGTCACCGAAGATCGACGGGGTGTCGTCGCTTACCGGACCGTGTGACATGATGCGCCCTCTCGGCAGGAGAGTGATACCGATCACATTCAC > 703 Mkms_1879 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_mmc:Mmcs_1832_general_substrate_transporter general_substrate_transporter YP_937869.1 11 MTSDAVDVDRAGGDLVGGVPRRRIVIASMVGTTIEFYDFYIYATAAVSVFPHLFFPKSDSTTALLASLATFGLAFVARPLGSVLFGHFGDRAGRKTTLVASLLVMGIATFAIGLLPTYSQVGIIAPALLAIMRFSQGLALGGEWSGAALLATETAKPGRRGWAAMWPQLGAPLGFLLANGLFLGLILLLGHSNVTPDTDGAFLTWGWRVPFLLSAVMVALGLYVRLRIMETPVFTRAVARGEKVKAPVAEVFRTSWRQLIIGTFVMLATYTLFYIVTTWALSFGTGKKPPDGAGRGFPYVDFLQMQLIAVLFFAAVLPLSGLCADRFGRRRTLLVVTAGIMVYGLLFAPMLGSADTSSATMLVFLIIGMTLMGFTFGPMSAVLPELFPTNVRYTGSGIAYNVSSILGAAVAPFIATWLATTYGVGWVGVYLLIAGSLTFIAVLVMRETKDAPLDSVDTLQQAR high_GC_Gram+ Mycobacterium_sp._KMS Mycobacterium_sp._KMS NC_008705 1991786..1993177 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Kiss,H.,_Brettin,T.,_Bruce,D.,_Han,C.,_Tapia,R.,_Gilna,P.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Miller,C.D._and_Richardson,P. NA 0:1392 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000518.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000379Source_DNA_and_bacteria_available_from_Charles_Miller(cdmiller@biology.usu.edu)Contacts:_Charles_Miller_(cdmiller@biology.usu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 20-JAN-2012 Mycobacterium_sp._KMS_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_sp_A1UE21_MYCSK.gb Mycobacterium_Lehmann_and_Neumann_1896 119866057 Unpublished NA NC_008705 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1392 NA genomic_DNA NA KMS NA Mycobacterium_sp._KMS NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 189918 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium Complete_sequence_of_chromosome_of_Mycobacterium_sp._KMS NA NC_008705.1 ATGACCAGCGACGCCGTGGACGTCGACCGCGCAGGGGGCGACCTCGTCGGCGGTGTTCCGCGCCGGCGCATCGTGATCGCATCGATGGTCGGCACCACCATCGAGTTCTACGACTTCTACATCTATGCGACTGCGGCCGTCTCGGTGTTCCCCCACCTGTTCTTTCCCAAGAGCGATTCGACGACGGCGCTGCTGGCGTCGCTGGCCACGTTCGGTCTCGCCTTCGTGGCCCGGCCGCTGGGATCGGTACTGTTCGGCCACTTCGGCGACCGCGCGGGCCGCAAGACCACGCTGGTCGCGTCGCTGCTGGTGATGGGTATCGCGACCTTCGCCATCGGCCTGCTGCCGACGTACTCGCAGGTGGGCATCATCGCCCCGGCGCTGTTGGCGATCATGCGCTTCTCACAGGGTCTGGCGCTCGGCGGGGAATGGAGCGGCGCGGCGCTGCTGGCCACCGAGACCGCCAAGCCGGGCAGGCGCGGGTGGGCCGCGATGTGGCCGCAACTGGGGGCGCCGTTGGGCTTCCTCCTGGCCAACGGCCTGTTCCTCGGCCTGATCCTCCTGCTCGGCCACAGCAACGTCACCCCGGACACGGACGGCGCGTTCCTCACCTGGGGGTGGCGGGTGCCGTTCCTGCTGAGCGCCGTGATGGTCGCGCTCGGGCTGTACGTGCGGCTGCGCATCATGGAGACCCCGGTCTTCACCCGGGCGGTCGCCCGCGGCGAGAAGGTGAAGGCTCCGGTCGCCGAGGTGTTCCGGACGAGCTGGCGACAGCTGATCATCGGCACGTTCGTGATGCTCGCGACCTACACGCTGTTCTACATCGTCACCACGTGGGCGCTGAGTTTCGGCACCGGCAAGAAGCCGCCGGACGGCGCCGGCCGCGGGTTCCCGTACGTCGACTTCCTGCAGATGCAGCTGATCGCGGTGTTGTTCTTCGCGGCGGTCCTGCCGTTGTCCGGCCTGTGCGCCGACCGCTTCGGCCGGCGCCGCACGCTGCTGGTGGTGACCGCCGGGATCATGGTCTACGGTTTGCTGTTCGCCCCGATGCTGGGGTCGGCAGACACCTCGTCGGCGACGATGCTGGTCTTCCTGATCATCGGAATGACCTTGATGGGCTTCACTTTCGGGCCGATGAGCGCCGTGCTACCGGAGTTGTTCCCGACCAACGTCCGCTACACGGGGTCCGGGATCGCCTACAACGTGTCGAGCATTCTCGGGGCCGCGGTGGCCCCGTTCATCGCCACCTGGCTCGCGACGACCTACGGGGTCGGATGGGTCGGGGTGTACCTGCTGATCGCAGGTTCGCTCACTTTCATCGCGGTCCTGGTCATGCGCGAGACGAAGGACGCCCCGCTCGACTCGGTGGACACCCTGCAGCAGGCTCGCTAG > 704 Mkms_3209 TIGRFAM:_sugar_transporter;_PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_mmc:Mmcs_3147_sugar_transporter sugar_transporter YP_939193.1 11 MAGHGGAPVGGDLPIGDDEFTSGKTAIRIASVAALGGLLFGYDSAVINGAVDSIQEDFGIGNASLGFAVASALLGAAAGAMTAGRIADKIGRIAVMKIAAVLFLISAFGTGFAHEVWAVVLFRIVGGIGVGVASVIAPAYIAETSPPSIRGRLGSLQQLAIVSGIFLSFVVNWLLQWAADGPNKPLWFGVDAWRWMFLAMAVPAVVYGALAFTIPESPRYLVASHKIPEARRVLSTLLGKKNLEITITRIRETLEREDKPSWRDLRKPTGGLFGIVWVGLGLSIFQQFVGINVIFYYSNVLWQAVGFSADESAVYTVITSVINVLTTLIAIALIDKIGRKPLLLIGSSGMAVTLITMAVIFANATLDADGNPSLPGASGVIALIAANLFVVAFGMSWGPVVWVLLGEMFPNRIRAAALGLAAAGQWAANWLITVTFPGLREHLGLAYGFYGMCAILSGLFVWRWVRETKGVSLEDMHGEILKHDLPTGAKEG high_GC_Gram+ Mycobacterium_sp._KMS Mycobacterium_sp._KMS NC_008705 3364404..3365882 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Kiss,H.,_Brettin,T.,_Bruce,D.,_Han,C.,_Tapia,R.,_Gilna,P.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Miller,C.D._and_Richardson,P. NA 0:1479 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000518.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000379Source_DNA_and_bacteria_available_from_Charles_Miller(cdmiller@biology.usu.edu)Contacts:_Charles_Miller_(cdmiller@biology.usu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 20-JAN-2012 Mycobacterium_sp._KMS_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_sp_A1UHU5_MYCSK.gb Mycobacterium_Lehmann_and_Neumann_1896 119866057 Unpublished NA NC_008705 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1479 NA genomic_DNA NA KMS NA Mycobacterium_sp._KMS NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 189918 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium Complete_sequence_of_chromosome_of_Mycobacterium_sp._KMS NA NC_008705.1 TCAGCCCTCCTTGGCGCCCGTGGGCAGGTCGTGCTTGAGGATCTCGCCGTGCATGTCCTCCAGGGACACCCCCTTGGTCTCCCGCACCCAGCGCCACACGAACAGGCCGGACAGGATCGCGCACATCCCGTAGAAGCCATAGGCGAGACCGAGGTGCTCGCGCAGCCCCGGGAAGGTGACGGTGATCAGCCAGTTGGCCGCCCACTGACCGGCGGCTGCCAGGCCCAGCGCGGCGGCCCGGATGCGGTTGGGGAACATCTCGCCGAGCAGCACCCACACGACCGGACCCCACGACATGCCGAACGCGACGACGAACAGGTTCGCCGCGATCAGCGCGATCACCCCGGACGCGCCGGGCAGGCTGGGGTTGCCGTCGGCGTCGAGCGTCGCGTTGGCGAAGATCACCGCCATGGTGATCAGCGTGACCGCCATACCCGACGAGCCGATGAGCAGCAGCGGTTTGCGGCCGATCTTGTCGATCAGCGCGATCGCGATGAGCGTGGTGAGCACGTTGATCACCGAGGTGATGACGGTGTAGACCGCCGATTCGTCGGCGCTGAAGCCGACCGCCTGCCACAGCACGTTGGAGTAGTAGAAGATCACGTTGATACCGACGAACTGCTGGAAGATCGACAGTCCGAGACCCACCCAGACGATGCCGAAGAGGCCGCCGGTGGGCTTGCGCAGATCACGCCACGACGGTTTGTCCTCGCGCTCCAGCGTCTCCCGGATGCGGGTGATGGTGATCTCGAGATTCTTCTTGCCGAGCAGCGTGCTCAGCACCCGGCGGGCCTCCGGGATCTTGTGGCTGGCAACGAGATACCGCGGTGACTCCGGGATCGTGAAGGCCAGTGCGCCGTACACGACGGCGGGCACCGCCATCGCGAGGAACATCCAGCGCCAGGCGTCGACGCCGAACCACAGCGGCTTGTTGGGTCCGTCGGCCGCCCACTGCAAGAGCCAGTTGACGACGAAGGACAGGAAGATGCCGGACACGATCGCCAGTTGCTGCAGGGAGCCGAGGCGGCCACGGATGCTCGGTGGTGAGGTCTCGGCGATGTAGGCGGGGGCGATCACCGATGCCACGCCGACGCCGATGCCGCCGACGATGCGGAACAGCACGACGGCCCACACCTCGTGGGCGAAACCGGTGCCGAAGGCGCTGATGAGGAACAGGACCGCGGCGATCTTCATCACCGCGATGCGGCCGATCTTGTCGGCGATGCGGCCCGCGGTCATCGCACCGGCCGCGGCGCCCAGCAGCGCCGACGCGACGGCGAAGCCGAGCGAGGCGTTACCGATTCCGAAGTCCTCCTGGATGGAGTCGACGGCGCCGTTGATGACCGCGCTGTCGTAGCCGAACAGCAGGCCGCCGAGCGCGGCGACCGAGGCGATCCGAATGGCGGTCTTGCCGGACGTGAATTCGTCGTCTCCGATGGGCAGGTCGCCCCCTACCGGTGCCCCTCCGTGACCAGCCAT > 705 Mjls_1708 PFAM:_General_substrate_transporter;_protein_of_unknown_function_DUF1228;_major_facilitator_superfamily_MFS_1;_KEGG:_mmc:Mmcs_1729_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_001069989.1 11 MSSRTEGDCPAKTTKQRLPREVWVLVVANVVVALGYGVVAPVLPQYARHFGVSISAATFVITAFAVMRLVGAPAAGLFVQRLGERRVYVSGLIIVALSTAACAFAETYWQLLLFRSLGGVGSAMFTVSSLGLMIRISPPDARGRVAGLFSSGFMIGSVGGPILGSLTAGLGLSAPFVIYGAALLVAAAVVFISLRNSAVVGRADEAIETPVPFRAVIRHRAYQAALFSNFATGWASFGLRIALVPLFVVEVLGRGPGAAGLALTAFAVGNISVVIPSGYLSDRLGRRKLLIFGLALAAVSTALVGFTTSMPVFLAAAYVAGAATGVFVSPQQAAVADVVGNKSRGGTAVATFQMMADFGSIGGSLLVGLIAQYTSFGWAFLISGVILGVAAVGWIFAPETRPRSSTEHTQARPLGPEAGGEVP high_GC_Gram+ Mycobacterium_sp._JLS Mycobacterium_sp._JLS NC_009077 1802874..1804145 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Miller,C.D.,_Anderson,A.J.,_Sims,R.C._and_Richardson,P. NA 0:1272 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000580.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000378Source_DNA_and_bacteria_available_from_Charles_Miller(cdmiller@biology.usu.edu)Contacts:_Charles_Miller_(cdmiller@biology.usu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)Additional_Note:_There_is_a_21kb_repeat_at_1513668-1544927_in_thefinal_assembly_that_possibly_sometimes_inserts_itself_at_location5440327_in_the_chromosome.COMPLETENESS:_full_length. NA 20-JAN-2012 Mycobacterium_sp._JLS_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_sp_A3PX71_MYCSJ.gb Mycobacterium_Lehmann_and_Neumann_1896 126432613 Unpublished NA NC_009077 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1272 NA genomic_DNA NA JLS NA Mycobacterium_sp._JLS NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 164757 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium Complete_sequence_of_Mycobacterium_sp._JLS NA NC_009077.1 GTGAGTTCACGGACGGAGGGCGACTGTCCGGCGAAAACGACGAAGCAGCGGCTGCCCCGCGAAGTCTGGGTGCTCGTCGTCGCCAACGTCGTCGTAGCGCTCGGTTACGGCGTGGTGGCCCCGGTGCTGCCGCAGTACGCCCGGCACTTCGGGGTCAGTATCAGCGCGGCGACGTTCGTCATCACCGCCTTCGCTGTGATGCGCCTGGTCGGGGCGCCGGCGGCCGGGCTGTTCGTTCAACGGCTGGGGGAGCGGCGGGTCTACGTCAGTGGCCTGATCATCGTGGCGTTGTCGACCGCGGCGTGCGCATTCGCCGAAACCTATTGGCAGCTCCTGCTGTTCCGATCGCTGGGCGGTGTCGGATCCGCGATGTTCACCGTCTCGTCGCTGGGGCTGATGATCCGGATCTCGCCGCCCGACGCGCGGGGCCGCGTCGCGGGGCTGTTCTCGTCGGGCTTCATGATCGGCTCGGTGGGCGGTCCGATCCTCGGAAGTCTCACCGCCGGGCTGGGGTTGTCGGCGCCGTTCGTCATCTACGGGGCGGCGCTGTTGGTCGCCGCGGCGGTGGTGTTCATCAGCCTGCGCAACTCCGCCGTGGTGGGCCGGGCCGACGAAGCGATCGAAACGCCGGTGCCGTTCCGGGCGGTGATCCGGCACCGGGCCTACCAGGCGGCGCTGTTCTCCAACTTCGCGACGGGGTGGGCGTCGTTCGGACTGCGGATCGCGCTGGTGCCGCTGTTCGTCGTGGAGGTGCTGGGCCGCGGGCCCGGTGCGGCCGGTCTGGCGCTCACGGCGTTCGCGGTCGGCAACATCTCGGTCGTCATCCCCAGCGGGTACCTGTCGGACCGTCTCGGCCGGCGCAAACTATTGATCTTCGGGCTGGCGTTGGCGGCGGTGTCGACCGCGCTGGTGGGTTTCACGACGTCGATGCCGGTGTTCCTGGCCGCCGCCTACGTGGCCGGCGCGGCCACCGGGGTGTTCGTCTCACCGCAGCAGGCCGCGGTGGCCGACGTGGTGGGCAACAAGTCGCGGGGCGGGACCGCGGTCGCGACCTTCCAGATGATGGCCGACTTCGGCTCCATCGGCGGCTCGCTGCTGGTCGGCCTGATCGCCCAGTACACCTCGTTCGGGTGGGCGTTCCTGATCAGCGGCGTCATCCTCGGTGTGGCGGCGGTGGGCTGGATCTTCGCGCCCGAGACCCGGCCCCGGTCGTCCACCGAGCACACCCAGGCCCGTCCGCTCGGTCCGGAGGCCGGTGGCGAAGTGCCGTGA > 706 Mjls_3818 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_mmc:Mmcs_3832_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_001072085.1 11 MAATSATATVGTSPLRVASASFIGTTVEYYDFLIYGTAAALVFPRLFFPDVSPATGLLLSFATFGVGFVARPLGGIVFGHYGDRVGRKRMLVYSLLIMGTATVLMGALPTYAQIGVAAPILLTLLRLAQGFAVGGEWGGATLMAVEHATPDRKGLYGAFPQMGAPAGTATATLAFYAVSLLPDEQFLSWGWRIPFLASAVLIVIGLVIRLSLAESPEFAAVQARAAVLRLPIAVAFRRHWRQILLVAGAYLSQGVFAYICVAYLVSYATTVAGIDRAQALLGVCVAAVVAVVMYPVFGRVSDAVGRKPVFLAGVIAMGMSVLPVFALINTGRPGLFLLALVLVFGLAMAPAAGVTGSLFSLAFDADVRYSGVSLGYTLSAVVGSAFAPTIATALYAATESSDSIAAYMIAVSVISAVSVSLMPGPWRQPRVR high_GC_Gram+ Mycobacterium_sp._JLS Mycobacterium_sp._JLS NC_009077 4039732..4041030 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Miller,C.D.,_Anderson,A.J.,_Sims,R.C._and_Richardson,P. NA 0:1299 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000580.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000378Source_DNA_and_bacteria_available_from_Charles_Miller(cdmiller@biology.usu.edu)Contacts:_Charles_Miller_(cdmiller@biology.usu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)Additional_Note:_There_is_a_21kb_repeat_at_1513668-1544927_in_thefinal_assembly_that_possibly_sometimes_inserts_itself_at_location5440327_in_the_chromosome.COMPLETENESS:_full_length. NA 20-JAN-2012 Mycobacterium_sp._JLS_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_sp_A3Q367_MYCSJ.gb Mycobacterium_Lehmann_and_Neumann_1896 126432613 Unpublished NA NC_009077 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1299 NA genomic_DNA NA JLS NA Mycobacterium_sp._JLS NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 164757 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium Complete_sequence_of_Mycobacterium_sp._JLS NA NC_009077.1 ATGGCAGCGACCAGTGCCACCGCCACCGTCGGCACGTCGCCGCTGCGGGTCGCGTCGGCCAGTTTCATCGGAACGACCGTCGAGTACTACGACTTCCTGATCTACGGCACCGCGGCCGCGCTGGTGTTCCCCAGACTGTTCTTTCCCGACGTGTCGCCGGCCACCGGACTCCTGTTGTCCTTCGCGACGTTCGGGGTCGGCTTCGTCGCCCGCCCGTTGGGCGGCATCGTCTTCGGCCACTACGGCGACCGGGTGGGACGCAAGCGGATGCTGGTCTACTCGCTGCTCATCATGGGCACCGCGACGGTGCTCATGGGTGCCCTGCCCACCTACGCGCAGATCGGTGTCGCGGCGCCGATCCTGTTGACGCTGTTGCGGTTGGCACAGGGCTTCGCCGTCGGCGGTGAGTGGGGCGGCGCCACCCTGATGGCCGTCGAACACGCCACACCGGACCGCAAGGGGCTGTACGGGGCGTTCCCGCAGATGGGCGCCCCCGCCGGTACGGCCACCGCGACGTTGGCGTTCTACGCCGTCTCGCTGCTGCCCGACGAGCAGTTCCTGTCCTGGGGTTGGCGGATCCCGTTCCTCGCCAGCGCCGTGTTGATCGTCATCGGCCTGGTCATCAGGCTCTCGCTGGCGGAGAGTCCCGAATTCGCGGCGGTGCAGGCCCGTGCCGCGGTCCTGCGGTTGCCGATCGCCGTGGCGTTCAGAAGACACTGGCGGCAGATCCTGCTCGTCGCCGGGGCGTATCTGTCGCAGGGGGTGTTCGCCTACATCTGCGTGGCGTACCTGGTGTCCTACGCCACCACCGTGGCCGGGATCGACCGTGCCCAGGCACTTCTCGGTGTCTGTGTGGCCGCCGTGGTCGCGGTCGTGATGTATCCGGTGTTCGGCCGGGTGTCCGACGCCGTCGGCCGCAAACCGGTCTTCCTGGCCGGCGTGATCGCGATGGGCATGTCCGTGCTGCCGGTCTTCGCGCTGATCAACACCGGTAGGCCGGGGCTGTTCCTGCTCGCGCTCGTGCTGGTGTTCGGGTTGGCGATGGCACCGGCGGCCGGCGTGACCGGATCGCTGTTCAGCCTGGCATTCGACGCCGACGTGCGCTACAGCGGTGTCTCGCTGGGCTATACGCTCTCGGCGGTGGTCGGATCGGCATTCGCACCGACCATCGCCACGGCCCTGTACGCGGCGACCGAATCCAGCGATTCGATCGCCGCCTACATGATCGCGGTGTCGGTGATCTCGGCGGTGTCGGTCAGCCTGATGCCTGGGCCCTGGCGGCAGCCCCGGGTCAGGTGA > 707 Mjls_3822 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_mmc:Mmcs_3836_general_substrate_transporter general_substrate_transporter YP_001072089.1 11 MESQTSAPAPAETAAIRKAVAGASIGNAVEWFDFAIYGFLATFIAAKFFPAGNDTAALLNTFAIFAAAFFMRPLGGFVFGPLGDRIGRQRVLAVVILLMSVATLGIGLLPTYASIGVAAPLLLLFLRCLQGFSAGGEYGGGAVYLAEYARDRNRGLTVTFIAWSGVVGFLLGSVTVTVLQALLPTAAMDSYGWRIPFLIAAPLGLVGLYIRLRLDDTPEFAALSETDRVASSPLREAATTAWRPILQVIGLFIVFNVGYYVVFTFLPTYFIKTLEFGKTAAFVSMSLASLVALVLILPLAALSDRIGRRPLLIGGAVAFVIFAYPLFLLLNSGSLAAAITAHCVLAAIESIYVSTAVTAGVELFATRVRYSGFSIGYNVSVAAFGGTTPYVVTWMTATTENNLAPALYLIVAAVVSLATLLTLRESAGRPLAATLAADVRR high_GC_Gram+ Mycobacterium_sp._JLS Mycobacterium_sp._JLS NC_009077 4044404..4045729 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Miller,C.D.,_Anderson,A.J.,_Sims,R.C._and_Richardson,P. NA 0:1326 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000580.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000378Source_DNA_and_bacteria_available_from_Charles_Miller(cdmiller@biology.usu.edu)Contacts:_Charles_Miller_(cdmiller@biology.usu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)Additional_Note:_There_is_a_21kb_repeat_at_1513668-1544927_in_thefinal_assembly_that_possibly_sometimes_inserts_itself_at_location5440327_in_the_chromosome.COMPLETENESS:_full_length. NA 20-JAN-2012 Mycobacterium_sp._JLS_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_sp_A3Q371_MYCSJ.gb Mycobacterium_Lehmann_and_Neumann_1896 126432613 Unpublished NA NC_009077 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1326 NA genomic_DNA NA JLS NA Mycobacterium_sp._JLS NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 164757 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium Complete_sequence_of_Mycobacterium_sp._JLS NA NC_009077.1 TCATCGTCGCACGTCAGCGGCCAGTGTCGCGGCCAGCGGCCGGCCGGCGGACTCCCGCAGGGTGAGCAGCGTCGCCAGCGATACGACGGCCGCGACGATCAGGTACAGCGCCGGGGCGAGGTTGTTCTCGGTCGTCGCGGTCATCCACGTGACGACGTAGGGCGTCGTCCCGCCGAACGCCGCGACCGACACGTTGTAGCCGATGGAGAACCCGCTGTAGCGCACCCGGGTGGCGAACAGTTCGACGCCGGCGGTGACCGCGGTCGACACGTAGATCGACTCGATGGCCGCCAGCACGCAGTGCGCGGTGATCGCCGCGGCGAGCGAACCGGAATTCAGCAGCAGGAACAGCGGATACGCGAAGATCACGAACGCCACCGCCCCGCCGATCAGCAGCGGACGCCTGCCGATGCGGTCCGACAGCGCGGCCAGCGGCAGGATCAGCACCAGGGCGACCAGACTGGCCAGCGACATCGAGACGAACGCCGCCGTCTTGCCGAATTCGAGGGTCTTGATGAAGTAGGTCGGCAGGAACGTGAACACCACGTAGTAGCCGACGTTGAACACGATGAACAGGCCGATCACCTGCAGGATCGGCCGCCACGCGGTGGTGGCCGCCTCACGCAGCGGCGACGACGCCACCCGGTCGGTCTCCGACAGCGCCGCGAACTCGGGCGTGTCGTCGAGGCGTAACCGGATGTAGAGGCCGACCAGGCCCAGCGGTGCGGCGATCAGGAACGGGATCCGCCAGCCGTAGCTGTCCATCGCCGCGGTGGGCAACAGCGCCTGCAGCACCGTCACCGTCACCGAGCCGAGCAGGAAGCCGACGACACCGGACCAGGCGATGAACGTGACCGTCAACCCGCGGTTGCGGTCACGGGCGTACTCGGCGAGATAGACTGCGCCGCCACCGTATTCGCCGCCCGCGGAGAACCCCTGCAGGCATCGCAGGAACAGCAGCAGCAGCGGTGCGGCGACGCCGATGCTGGCGTAGGTCGGCAGCAGGCCGATGCCGAGCGTGGCCACCGACATCAGCAGGATGACCACCGCGAGCACCCGCTGACGTCCGATCCGGTCGCCGAGCGGGCCGAAGACGAACCCGCCGAGGGGCCGCATGAAGAAGGCCGCGGCGAAGATCGCGAACGTGTTCAGCAGGGCGGCCGTGTCGTTGCCCGCCGGGAAGAACTTGGCGGCGATGAAAGTGGCGAGGAAGCCGTAGATGGCGAAGTCGAACCATTCGACGGCGTTACCGATCGACGCGCCTGCGACCGCTTTGCGGATGGCCGCCGTCTCGGCGGGTGCAGGCGCGGATGTCTGACTCTCCAT > 708 Mspyr1_18130 PFAM:_Sugar_(and_other)_transporter;_Major_Facilitator_Superfamily;_TIGRFAM:_metabolite-proton_symporter sugar_phosphate_permease YP_004076309.1 11 MTVDEDQRRPSGAEPAAVRQAVRGAAIGNTVEWFDFAIYGFLATYIADKFFPSGDETAALLSTFAVFAAAFFMRPLGGFFFGPLGDRIGRQRVLAIVILLMSASTLAIGLVPSYDSIGVLAPILLLVLRCLQGFSAGGEYGSGACFLAEYAPNRHRGFVVSFLVWSVVVGFLAGAITVTALETWLSEDAMNSYGWRIPFMIAGLLGAVGLYIRLKLGDTPEFRSLRESGEVSQSPLREAVTTSWRPILQIIGLVVIHNVGFYIVYTFLPSYFTETLDFSKVDAFWSITVASLVGIVLIPPLGALSDRIGRKSLLIAGAVAFAVFAYPLFLLLNTGSLAAAIAAHAALAAIESVFVSASLAAGAELFATKVRSSGYSIGYNVSVAVFGGTAPYVATWLVSRTGNDIAPAYYLIAAAIVSLLTVLTMRETARKPLRKLVHP high_GC_Gram+ Mycobacterium_sp._Spyr1 Mycobacterium_sp._Spyr1 NC_014814 1845287..1846606 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_LaButti,K.,_Ivanova,N.M.,_Mikhailova,N.M.,_Land,M.,_Hauser,L.,_Koukkou,A.I.,_Drainas,C.,_Kyrpides,N._and_Woyke,T. NA 0:1320 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002385.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4043073Source_DNA_and_organism_available_from_Nikos_C._Kyrpides(nckyrpides@lbl.gov)Contacts:_Nikos_C._Kyrpides_(nckyrpides@lbl.gov)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Mycobacterium_sp._Spyr1collection_date_::_Missinglat_lon_::_39.674495_20.840141depth_::_Missingalt_elev_::_Missingcountry_::_Greeceenvironment_::_Creosote-contaminated_soil,_Soilnum_replicons_::_3ref_biomaterial_::_Missingbiotic_relationship_::_Free_livingtrophic_level_::_Chemoorganotrophrel_to_oxygen_::_Aerobeisol_growth_condt_::_Missingsequencing_meth_::_WGSassembly_::_Arachne_v._3.0finishing_strategy_::_FinishedGOLD_Stamp_ID_::_Gi02013Greengenes_ID_::_144250Isolation_Site_::_"creosote_contaminated_site_near_Ioannina,_Epirus,_Greece"cell_Shape_::_Rod-shapedMotility_::_Nonmotilesporulation_::_NonsporulatingTemperature_Range_::_MesophileGram_Staining_::_Gram+Diseases_::_None##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_FinishedAssembly_Method_::_Arachne_v._3.0Genome_Coverage_::_30xSequencing_Technology_::_Sanger##Genome-Assembly-Data-END##COMPLETENESS:_full_length. NA 22-JAN-2012 Mycobacterium_sp._Spyr1_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_sp_E6TB78_MYCSR.gb Mycobacterium_Lehmann_and_Neumann_1896 315441696 Unpublished NA NC_014814 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1320 NA genomic_DNA NA Spyr1 NA Mycobacterium_sp._Spyr1 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 278137 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium Complete_sequence_of_chromosome_of_Mycobacterium_sp._Spyr1 NA NC_014814.1 TCACGGATGGACCAGCTTGCGCAGTGGTTTGCGTGCGGTCTCACGCATGGTGAGCACTGTCAGCAGCGAGACGATCGCGGCGGCGATCAGGTAGTACGCCGGGGCGATGTCGTTGCCGGTGCGCGACACCAGCCAGGTCGCGACATACGGGGCGGTGCCACCGAAGACGGCGACCGAGACGTTGTAGCCGATGGAGTATCCGCTGGACCGGACCTTGGTGGCGAACAGCTCGGCGCCCGCTGCCAGCGACGCGCTGACGAACACCGACTCGATGGCCGCGAGCGCCGCGTGGGCCGCGATCGCAGCGGCCAGCGACCCGGTGTTGAGCAGCAGGAACAGCGGGTAGGCGAACACCGCGAAGGCGACAGCACCGGCGATCAGCAGCGACTTGCGTCCGATCCGGTCCGACAGTGCGCCCAGCGGTGGGATCAGCACGATGCCGACCAGGCTCGCCACGGTGATCGACCAGAACGCGTCGACCTTGCTGAAATCCAGGGTCTCGGTGAAGTAGCTCGGCAGGAACGTGTAGACGATGTAGAAGCCGACGTTGTGAATGACGACGAGGCCGATGATCTGCAGAATCGGCCGCCATGACGTGGTGACGGCTTCACGCAGCGGCGACTGCGAGACCTCTCCCGACTCGCGCAGCGACCGGAATTCGGGCGTGTCGCCGAGCTTGAGGCGGATGTAGAGGCCGACGGCGCCGAGAAGGCCGGCGATCATGAACGGGATGCGCCAGCCGTAGGAGTTCATCGCATCCTCGGACAACCACGTCTCCAGCGCGGTGACGGTGATCGCACCGGCCAGGAAGCCGACGACGACGGACCAGACGAGGAAGGACACCACGAACCCGCGGTGCCGGTTCGGGGCGTACTCGGCGAGGAAGCAGGCCCCGCTGCCGTACTCGCCGCCGGCGGAGAACCCCTGAAGACACCGCAGTACCAGCAGCAGGATCGGGGCCAGCACCCCGATGGAGTCATAGCTCGGGACCAGGCCGATCGCGAGCGTCGACGCCGACATCAGCAGGATCACGATCGCCAGCACGCGTTGGCGGCCGATCCGGTCACCGAGGGGGCCGAAGAAGAAACCCCCGAGCGGCCGCATGAAGAACGCCGCCGCGAAGACCGCGAAAGTACTGAGCAGAGCGGCTGTTTCGTCTCCCGACGGGAAGAACTTGTCCGCGATGTAGGTGGCGAGGAATCCGTAGATCGCGAAGTCGAACCATTCGACGGTGTTGCCGATCGCCGCGCCACGCACAGCCTGTCGCACTGCTGCGGGTTCGGCTCCGCTGGGTCGGCGCTGATCCTCATCGACGGTCAC > 709 TBCG_01855 similar_to_conserved_membrane_protein;_Mapped_to_H37Rv_Rv1903 hypothetical_protein EAY60147.1 11 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSLLARDFRRVTRAH high_GC_Gram+ Mycobacterium_tuberculosis_C Mycobacterium_tuberculosis_C CH482373 1806440..1807798 Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Borowsky,M.L.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Oleary,S.,_Alvarado,L.,_Murray,M._and_Kreiswirth,B. NA 1358:>1359 NA NA 07-FEB-2007 Mycobacterium_tuberculosis_C_supercont1.1_genomic_scaffold,_whole_genome_shotgun_sequence. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_tuberculosis_A2VJ16_MYCTU.gb Mycobacterium_Lehmann_and_Neumann_1896 81302497 Unpublished NA CH482373 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1359 NA genomic_DNA NA C NA Mycobacterium_tuberculosis_var._hominis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 348776 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium,_Mycobacterium_tuberculosis_complex The_Genome_Sequence_of_Mycobacterium_tuberculosis_(strain_C) NA CH482373.1 CTAATGTCGATTTCGATGACGAACAAGAAAAGCAGTTTCCGTAGTACCAAAGCGGATTCCGGTGGCATCCTTGCCAATCGCCGTCAGCACCGCTACGACCAATAGCACGGGCACGATCGTCGCGGCCAAGGCGAAGGGGTAGCCATGGGATTCGGCCAGACGCTCTTGAATAGGAAGGTTGAACGCCGCCAGCAGATTACCGAGCTGGTAGGTTACGCCGGGGTAGACGCCCCGGATAGCGTCTGGCGACATCTCGGTCAGATGCGCGGGGATCACACCCCAGGCACCCTGTACGAAGACTTGCATCAAAAACGAACCCAGGCACAACATCGCCGCAGTGCGCGAGTAAGCGAACAGCGGCACGATCGGCAGTCCCAGCGCCGCACAGAAAACGATGGTGTAACGGCGGCTGAACCGCTGGGACAACGTGCCGAACGCCAGACCGCCGATGATGGCGCCGATGTTGTAGATCACCACTATCCACCTGGCGGTCAGGCTGGACAAACCGGCACCATGATCGGTAGTCGCGGTCAGGAAGGTCGGGTAGACATCCTGGGTGCCGTGGCTCATCCAGTTGAAGGCGGTCATCAACAGCACTAGGTAGACAAACCGGCGCACAATTGCGGGGTTACCCAGGACATCGCGGATTCGGGTCTTGGTGAGCCGCATGCGGTCCTGCGCGGCTTCCCAGACTTCGGATTCCTTTACCCGGTACCGGATGATCAAGCTGATCAGAGCCGGGATGATGCTTAGGCCGAACAACCACCGCCACGACAGCCCTAGCCAGTTCATCACCACCAGCGCTGCCACACTGGCCAGCAGATAGCCGAACGCGTAGCCCTCCTGCAGCAGCCCGGAGAAGACGCCACGCCGCTCGGCTGGAACCTTCTCCATGGACAGCGCGGCACCCAGCCCCCACTCTCCGCCCATGCCAATGCCGTAGAGCAGTCGCAGGATCACCAGCACGGTGAAGTTGGGTGCGAATGCGCACAGAAATCCGATCACCGAATAGAACGACACGTCGACCATCAGCGGGACCCGCCGGCCCACCCGGTCGGCCCATAGCCCGAACAGCAACGCACCCACGGGGCGCATGGCCAGGGTGGCGGTGGTGAGAAACGCGACGTCGGTCTTGGTGTGGTGGAAGGTCGTTGCGATGTCGGCATAGACCAGCACCACGAGAAAGTAATCGAACGCATCCATCGTCCAACCCAAGAAAGATGCCATAAAAGCGTTTCGCTGGTCGCCGGTCAACCGCGGTGCTGCCACGTCTGCATCGTGGCGTACCGGGCGCGGCACCGCGAGTCCGGGGACATGGCGAACAGCGGCGGCTCGCATGTCCGTGGCAGGATCGGGCAA > 710 TBHG_01184 Mapped_to_H37Rv_Rv1201c hypothetical_transferase EBA41661.1 11 MSTVTGAAGIGLATLAADGSVLDTWFPAPELTESGTSATSRLAVSDVPVELAALIGRDDDRRTETIAVRTVIGSLDDVAADPYDAYLRLHLLSHRLVAPHGLNAGGLFGVLTNVVWTNHGPCAIDGFEAVRARLRRRGPVTVYGVDKFPRMVDYVVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGLGISLGDDCVVEAGLYVTAGTRVTMPDSNSVKARELSGSSNLLFRRNSVSGAVEVLARDGQGIALNEDLHAN high_GC_Gram+ Mycobacterium_tuberculosis_str._Haarlem Mycobacterium_tuberculosis_str._Haarlem DS016976 1008375..1009652 Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Borowsky,M.L.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Zeng,Q.,_Kodira,C.,_Yandava,C.,_OLeary,S.,_Alvarado,L.,_Murray,M._and_Kreiswirth,B. NA 1274:>1278 NA NA 27-MAR-2007 Mycobacterium_tuberculosis_str._Haarlem_supercont1.1_genomic_scaffold,_whole_genome_shotgun_sequence. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_tuberculosis_A4KGC5_MYCTU.gb Mycobacterium_Lehmann_and_Neumann_1896 115333673 Unpublished NA DS016976 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1278 NA genomic_DNA NA Haarlem NA Mycobacterium_tuberculosis_var._hominis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 395095 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium,_Mycobacterium_tuberculosis_complex The_Genome_Sequence_of_Mycobacterium_tuberculosis_Haarlem NA DS016976.1 ATGAAGCGGGTTGCGCTGGCATGTCTTGTCGGCTCGGCGATCGAATTCTACGACTTCCTTATCTACGGCACCGCTGCGGCGCTGGTGTTTCCCACCGTGTTCTTCCCACACCTGGATCCCACGGTGGCCGCCGTGGCCTCGATGGGGACATTTGCTGTGGCGTTCCTATCCCGGCCGTTCGGCGCGGCCGTCTTTGGATACTTTGGAGACCGCCTCGGCCGCAAGAAGACCCTGGTCGCCACACTGTTGATCATGGGCCTGGCAACCGTGACTGTCGGGCTGGTTCCAACGACAGTGGCCATCGGCGCCGCGGCCCCACTGATCCTGACGACCATGCGGCTGCTGCAAGGGTTCGCGGTCGGCGGCGAGTGGGCCGGTTCGGCGCTGCTGAGCGCCGAGTACGCGCCCGCCAGCAAACGTGGCTGGTACGGGATGTTCACCGTTGTGGGTGGCGGCATCGCGCTGGTACTGACCAGCCTGACCTTTCTGGGCGTGAACTACACCATTGGCGAAAGCAGCCCCACATTCATGCAGTGGGGGTGGCGCATACCGTTTCTGGTCAGTGCGGCGCTGATCGCCGTCGCCCTATACGTGCGGTTCAACATCGACGAGACCCCGGTGTTCGCCCGGGAAAGGGCAGACGAAAAAACCCGTTTGGGCCCAGCCGAAACGCCGATTGCCCAAGTACTGCGGCGGCAGCGGCGAGAGATAGTCTTGGCCGCCGGCAGCGCCGTTTGCTGCTTCGGCTTCGTCTACCTGGCCAGCACTTACTTGGCCAGCTACGCTCAAACCCGACTGGGGTATTCGCGCGGCAGCATCCTGTTCGACAGTGTGCTGGGTGGACTGCTGTGCATCGTGTTCACCGCGCTTTCTTCCGCTCTTTGCGACCAACTCGGGCGCCGCCGCGTCCTATTGGCCGGGTGGGCGGTGGCTCTACCCTGGTCGCTGTTGGTCATGCCGCTGATCGACTCCGGCAGCCCCAGTTTGTTCGCGGTGGCTGTCGTCGGCATGTATGCCATCGGCGGATTCGGTTTCGGACCCACGGCATCGTTCATCCCAGAACTGTTTGCTACTAGCTACCGATACACGGGCAGCGCGCTCGCGGCGAATCTCGCTGGGGTTGCCGGCGGCGCGCTACCGCCGGTGATTGCCGGCGCGCTGGTGGCAACCTATGGCAGCTGGGCGATCGGTGTCATGCTGGCCATCCTCGCGTTGATCAGCCTGGTATGCACCTATCGGTTGCCCGAAACCGCCGGATCGGCCCTCGTCAGCCGCTAG > 711 TBNG_03125 NA dicarboxylic_acid_transport_membrane_protein_kGTP EFD19337.1 11 MTVSIAPPSRPSQAETRRAIWNTIRGSSGNLVEWYDVYVYTVFATYFEDQFFDRADRNSTVYVYAIFAVTFVTRPVGSWFFGRFADRRGRRAALTFSVSLMAACSLIVALVPSRSSIGVAAPILLILCRLVQGFATGGEYGTSATYMSEAATRERRGYFSSFQYVTLVGGHVLAQFTLLVILAVFTREQVHEFGWRIGFAVGGGAAIVVFWLRRTMDESLSQERLTAIKAGRDHDSGSLRELATHYWKPLLLCFLVTLGGTVAFYTYSVNAPAIVKSVYGSQAMTATWINLVGLILLMMLQPIGGMISDKIGRKPLLLWFGVGGLIYTYVLVTYLPETRSPTMSFLLVAVGYVILTGYCSINALVKSELFPAHVRALGVGVGYALANSVFGGTAPLIYQALKERDQVPMFIAYVTACIAVSLIVYVFFIKNKADTYLDREQGFAFYGHA high_GC_Gram+ Mycobacterium_tuberculosis_CPHL_A Mycobacterium_tuberculosis_CPHL_A GG663500 512268..513617 Small,P.,_Gagneaux,S.,_Hopewell,P.,_Young,S.K.,_Kodira,C.D.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1350 Genome_Coverage:_9.15X_(7.9X_Q>20)Sequencing_Technology:_ABIAnnotation_was_added_to_the_scaffolds_in_February_2010. NA 22-FEB-2010 Mycobacterium_tuberculosis_CPHL_A_genomic_scaffold_supercont1.4,_whole_genome_shotgun_sequence. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_tuberculosis_D6FM46_MYCTU.gb Mycobacterium_Lehmann_and_Neumann_1896 226234299 Unpublished NA GG663500 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1350 NA genomic_DNA NA CPHL_A NA Mycobacterium_tuberculosis_var._hominis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 611303 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium,_Mycobacterium_tuberculosis_complex The_Genome_Sequence_of_Mycobacterium_tuberculosis_strain_CPHL_A NA GG663500.1 CTATGCGTGCCCGTAGAATGCAAATCCCTGCTCGCGGTCGAGGTAGGTATCGGCCTTGTTCTTGATGAAAAACACATAGACAATCAGCGAGACCGCTATGCACGCGGTCACGTAGGCGATGAACATCGGCACCTGATCGCGTTCCTTAAGAGCCTGGTAGATCAGCGGCGCGGTGCCGCCGAAGACCGAGTTCGCCAGTGCATAGCCGACTCCGACACCAAGGGCGCGCACGTGCGCGGGGAACAGTTCGGACTTGACCAGTGCATTGATCGAGCAGTATCCGGTCAGAATCACATAGCCGACGGCCACCAATAGAAACGACATTGTCGGCGAACGTGTTTCGGGAAGATAAGTAACAAGGACGTAGGTATAGATGAGTCCGCCGACGCCGAACCACAGCAGCAGTGGCTTGCGGCCGATCTTGTCGCTGATCATGCCCCCGATGGGCTGCAGCATCATCAACAGAATCAGACCAACCAGGTTGATCCAAGTAGCGGTCATCGCCTGCGAACCGTAGACACTCTTGACGATCGCAGGTGCATTGACGCTGTAGGTATAAAACGCGACCGTGCCGCCCAACGTGACGAGGAAACAGAGCAGCAATGGCTTCCAATAGTGGGTGGCCAGTTCACGGAGCGACCCGGAGTCGTGGTCCCGCCCGGCCTTGATCGCAGTCAGGCGTTCCTGACTGAGCGATTCATCCATCGTGCGCCGCAACCAGAACACCACGATCGCGGCGCCACCGCCTACGGCGAAGCCGATGCGCCAGCCGAATTCGTGAACCTGCTCGCGGGTGAAGACCGCCAGGATGACTAGCAGGGTGAACTGGGCAAGCACGTGCCCACCCACCAGCGTCACATACTGAAACGACGAGAAGTAGCCGCGCCGCTCCCGCGTCGCGGCCTCAGACATGTACGTCGCCGACGTGCCGTACTCTCCGCCGGTCGCAAATCCCTGGACGAGCCGACACAAAATAAGCAGGATCGGCGCAGCGACGCCAATGCTCGAGCGAGACGGCACCAACGCCACGATCAGCGAACAGGCGGCCATCAGCGACACACTGAACGTCAGCGCGGCCCGGCGGCCGCGGCGGTCGGCAAACCGACCAAAGAACCACGATCCGACGGGCCGGGTCACGAAGGTAACAGCGAAGATCGCGTAGACATAGACCGTCGAGTTGCGATCGGCCCGATCAAAGAATTGGTCCTCGAAATACGTAGCGAACACGGTGTAGACGTAGACGTCATACCACTCGACCAGATTGCCCGACGATCCCCGGATCGTGTTCCAAATGGCCCGACGGGTCTCGGCCTGACTCGGGCGCGATGGAGGTGCAATGGAAACGGTCAT > 712 TMBG_03951 NA dicarboxylic_acid_transport_membrane_protein_kGTP EFP13664.1 11 MTVSIAPPSRPSQAETRRAIWNTIRGSSGNLVEWYDVYVYTVFATYFEDQFFDRADRNSTVYVYAIFAVTFVTRPVGSWFLGRFADRRGRRAALTFSVSLMAACSLIVALVPSRSSIGVAAPILLILCRLVQGFATGGEYGTSATYMSEAATRERRGYFSSFQYVTLVGGHVLAQFTLLVILAVFTREQVHEFGWRIGFAVGGGAAIVVFWLRRTMDESLSQERLTAIKAGRDHDSGSLRELATHYWKPLLLCFLVTLGGTVAFYTYSVNAPAIVKSVYGSQAMTATWINLVGLILLMMLQPIGGMISDKIGRKPLLLWFGVGGLIYTYVLVTYLPETRSPTMSFLLVAVGYVILTGYCSINALVKSELFPAHVRALGVGVGYALANSVFGGTAPLIYQALKERDQVPMFIAYVTACIAVSLIVYVFFIKNKADTYLDREQGFAFYGHA high_GC_Gram+ Mycobacterium_tuberculosis_SUMu002 Mycobacterium_tuberculosis_SUMu002 ADHR01000189 15804..17153 Galagan,J.,_Pepperell,C.,_Hoeppner,V.,_Gagneux,S.,_Small,P.,_Schoolnik,G.,_Feldman,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Mehta,T.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Henn,M.R.,_Nusbaum,C._and_Birren,B. NA 0:1350 Annotation_was_added_to_the_contigs_in_October_2010.##Genome-Assembly-Data-START##Genome_Coverage_::_18.1xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 12-OCT-2010 Mycobacterium_tuberculosis_SUMu002_cont1.189,_whole_genome_shotgun_sequence. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_tuberculosis_E2TGU7_MYCTU.gb Mycobacterium_Lehmann_and_Neumann_1896 289857132 Unpublished NA ADHR01000189 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1350 NA genomic_DNA NA SUMu002 NA Mycobacterium_tuberculosis_var._hominis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 675513 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium,_Mycobacterium_tuberculosis_complex The_Genome_Sequence_of_Mycobacterium_tuberculosis_strain_SUMu002 NA ADHR01000189.1 CTATGCGTGCCCGTAGAATGCAAATCCCTGCTCGCGGTCGAGGTAGGTATCGGCCTTGTTCTTGATGAAAAACACATAGACAATCAGCGAGACCGCTATGCACGCGGTCACGTAGGCGATGAACATCGGCACCTGATCGCGTTCCTTAAGAGCCTGGTAGATCAGCGGCGCGGTGCCGCCGAAGACCGAGTTCGCCAGTGCATAGCCGACTCCGACACCAAGGGCGCGCACGTGCGCGGGGAACAGTTCGGACTTGACCAGTGCATTGATCGAGCAGTATCCGGTCAGAATCACATAGCCGACGGCCACCAATAGAAACGACATTGTCGGCGAACGTGTTTCGGGAAGATAAGTAACAAGGACGTAGGTATAGATGAGTCCGCCGACGCCGAACCACAGCAGCAGTGGCTTGCGGCCGATCTTGTCGCTGATCATGCCCCCGATGGGCTGCAGCATCATCAACAGAATCAGACCAACCAGGTTGATCCAAGTAGCGGTCATCGCCTGCGAACCGTAGACACTCTTGACGATCGCAGGTGCATTGACGCTGTAGGTATAAAACGCGACCGTGCCGCCCAACGTGACGAGGAAACAGAGCAGCAATGGCTTCCAATAGTGGGTGGCCAGTTCACGGAGCGACCCGGAGTCGTGGTCCCGCCCGGCCTTGATCGCAGTCAGGCGTTCCTGACTGAGCGATTCATCCATCGTGCGCCGCAACCAGAACACCACGATCGCGGCGCCACCGCCTACGGCGAAGCCGATGCGCCAGCCGAATTCGTGAACCTGCTCGCGGGTGAAGACCGCCAGGATGACTAGCAGGGTGAACTGGGCAAGCACGTGCCCACCCACCAGCGTCACATACTGAAACGACGAGAAGTAGCCGCGCCGCTCCCGCGTCGCGGCCTCAGACATGTACGTCGCCGACGTGCCGTACTCTCCGCCGGTCGCAAATCCCTGGACGAGCCGACACAAAATAAGCAGGATCGGCGCAGCGACGCCAATGCTCGAGCGAGACGGCACCAACGCCACGATCAGCGAACAGGCGGCCATCAGCGACACACTGAACGTCAGCGCGGCCCGGCGGCCGCGGCGGTCGGCAAACCGACCAAGGAACCACGATCCGACGGGCCGGGTCACGAAGGTAACAGCGAAGATCGCGTAGACATAGACCGTCGAGTTGCGATCGGCCCGATCAAAGAATTGGTCCTCGAAATACGTAGCGAACACGGTGTAGACGTAGACGTCATACCACTCGACCAGATTGCCCGACGATCCCCGGATCGTGTTCCAAATGGCCCGACGGGTCTCGGCCTGACTCGGGCGCGATGGAGGTGCAATGGAAACGGTCAT > 713 TMCG_02945 NA conserved_membrane_protein EFP19465.1 11 MVPFLMRAAVTGFALWVVTLFVPGMRFAGGDTTLQRVAIIFVVAVIFGLVNAFIKPIVQILSIPLYILTLGLFHVVVNASMLWLTAWITEHTTHWGLQIDHFWWTAIWAAILLSIVSWILSLLARDFRRVTRAH high_GC_Gram+ Mycobacterium_tuberculosis_SUMu003 Mycobacterium_tuberculosis_SUMu003 ADHS01000084 2946..4304 Galagan,J.,_Pepperell,C.,_Hoeppner,V.,_Gagneux,S.,_Small,P.,_Schoolnik,G.,_Feldman,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Mehta,T.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Henn,M.R.,_Nusbaum,C._and_Birren,B. NA 1358:>1359 Annotation_was_added_to_the_contigs_in_October_2010.##Genome-Assembly-Data-START##Genome_Coverage_::_30.1xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 12-OCT-2010 Mycobacterium_tuberculosis_SUMu003_cont1.84,_whole_genome_shotgun_sequence. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_tuberculosis_E2TMF2_MYCTU.gb Mycobacterium_Lehmann_and_Neumann_1896 290478533 Unpublished NA ADHS01000084 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1359 NA genomic_DNA NA SUMu003 NA Mycobacterium_tuberculosis_var._hominis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 675514 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium,_Mycobacterium_tuberculosis_complex The_Genome_Sequence_of_Mycobacterium_tuberculosis_strain_SUMu003 NA ADHS01000084.1 CTAATGTCGATTTCGATGACGAACAAGAAAAGCAGTTTCCGTAGTACCAAAGCGGATTCCGGTGGCATCCTTGCCAATCGCCGTCAGCACCGCTACGACCAATAGCACGGGCACGATCGTCGCGGCCAAGGCGAAGGGGTAGCCATGGGATTCGGCCAGACGCTCTTGAATAGGAAGGTTGAACGCCGCCAGCAGATTACCGAGCTGGTAGGTTACGCCGGGGTAGACGCCCCGGATAGCGTCTGGCGACATCTCGGTCAGATGCGCGGGGATCACACCCCAGGCACCCTGTACGAAGACTTGCATCAAAAACGAACCCAGGCACAACATCGCCGCAGTGCGCGAGTAAGCGAACAGCGGCACGATCGGCAGTCCCAGCGCCGCACAGAAAACGATGGTGTAACGGCGGCTGAACCGCTGGGACAACGTGCCGAACGCCAGACCGCCGATGATGGCGCCGATGTTGTAGATCACCACTATCCACCTGGCGGTCAGGCTGGACAAACCGGCACCATGATCGGTAGTCGCGGTCAGGAAGGTCGGGTAGACATCCTGGGTGCCGTGGCTCATCCAGTTGAAGGCGGTCATCAACAGCACTAGGTAGACAAACCGGCGCACAATTGCGGGGTTACCCAGGACATCGCGGATTCGGGTCTTGGTGAGCCGCATGCGGTCCTGCGCGGCTTCCCAGACTTCGGATTCCTTTACCCGGTACCGGATGATCAAGCTGATCAGAGCCGGGATGATGCTTAGGCCGAACAACCACCGCCACGACAGCCCTAGCCAGTTCATCACCACCAGCGCTGCCACACTGGCCAGCAGATAGCCGAACGCGTAGCCCTCCTGCAGCAGCCCGGAGAAGACGCCACGCCGCTCGGCTGGAACCTTCTCCATGGACAGCGCGGCACCCAGCCCCCACTCTCCGCCCATGCCAATGCCGTAGAGCAGTCGCAGGATCACCAGCACGGTGAAGTTGGGTGCGAATGCGCACAGAAATCCGATCACCGAATAGAACGACACGTCGACCATCAGCGGGACCCGCCGGCCCACCCGGTCGGCCCATAGCCCGAACAGCAACGCACCCACGGGGCGCATGGCCAGGGTGGCGGTGGTGAGAAACGCGACGTCGGTCTTGGTGTGGTGGAAGGTCGTTGCGATGTCGGCATAGACCAGCACCACGAGAAAGTAATCGAACGCATCCATCGTCCAACCCAAGAAAGATGCCATAAAAGCGTTTCGCTGGTCGCCGGTCAACCGCGGTGCTGCCACGTCTGCATCGTGGCGTACCGGGCGCGGCACCGCGAGTCCGGGGACATGGCGAACAGCGGCGGCTCGCATGTCCGTGGCAGGATCGGGCAA > 714 TMDG_03231 NA dicarboxylic_acid_transport_membrane_protein_kGTP EFP21701.1 11 MEDTMTVSIAPPSRPSQAETRRAIWNTIRGSSGNLVEWYDVYVYTVFATYFEDQFFDRADRNSTVYVYAIFAVTFVTRPVGSWFLGRFADRRGRRAALTFSVSLMAACSLIVALVPSRSSIGVAAPILLILCRLVQGFATGGEYGTSATYMSEAATRERRGYFSSFQYVTLVGGHVLAQFTLLVILAVFTREQVHEFGWRIGFAVGGGAAIVVFWLRRTMDESLSQERLTAIKAGRDHDSGSLRELATHYWKPLLLCFLVTLGGTVAFYTYSVNAPAIVKSVYGSQAMTATWINLVGLILLMMLQPIGGMISDKIGRKPLLLWFGVGGLIYTYVLVTYLPETRSPTMSFLLVAVGYVILTGYCSINALVKSELFPAHVRALGVGVGYALANSVFGGTAPLIYQALKERDQVPMFIAYVTACIAVSLIVYVFFIKNKADTYLDREQGFAFYGHA high_GC_Gram+ Mycobacterium_tuberculosis_SUMu004 Mycobacterium_tuberculosis_SUMu004 ADHT01000172 15867..17228 Galagan,J.,_Pepperell,C.,_Hoeppner,V.,_Gagneux,S.,_Small,P.,_Schoolnik,G.,_Feldman,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Mehta,T.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Henn,M.R.,_Nusbaum,C._and_Birren,B. NA 0:1362 Annotation_was_added_to_the_contigs_in_October_2010.##Genome-Assembly-Data-START##Genome_Coverage_::_28.94xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 12-OCT-2010 Mycobacterium_tuberculosis_SUMu004_cont1.172,_whole_genome_shotgun_sequence. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_tuberculosis_E2U3I1_MYCTU.gb Mycobacterium_Lehmann_and_Neumann_1896 290478270 Unpublished NA ADHT01000172 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1362 NA genomic_DNA NA SUMu004 NA Mycobacterium_tuberculosis_var._hominis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 675515 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium,_Mycobacterium_tuberculosis_complex The_Genome_Sequence_of_Mycobacterium_tuberculosis_strain_SUMu004 NA ADHT01000172.1 CTATGCGTGCCCGTAGAATGCAAATCCCTGCTCGCGGTCGAGGTAGGTATCGGCCTTGTTCTTGATGAAAAACACATAGACAATCAGCGAGACCGCTATGCACGCGGTCACGTAGGCGATGAACATCGGCACCTGATCGCGTTCCTTAAGAGCCTGGTAGATCAGCGGCGCGGTGCCGCCGAAGACCGAGTTCGCCAGTGCATAGCCGACTCCGACACCAAGGGCGCGCACGTGCGCGGGGAACAGTTCGGACTTGACCAGTGCATTGATCGAGCAGTATCCGGTCAGAATCACATAGCCGACGGCCACCAATAGAAACGACATTGTCGGCGAACGTGTTTCGGGAAGATAAGTAACAAGGACGTAGGTATAGATGAGTCCGCCGACGCCGAACCACAGCAGCAGTGGCTTGCGGCCGATCTTGTCGCTGATCATGCCCCCGATGGGCTGCAGCATCATCAACAGAATCAGACCAACCAGGTTGATCCAAGTAGCGGTCATCGCCTGCGAACCGTAGACACTCTTGACGATCGCAGGTGCATTGACGCTGTAGGTATAAAACGCGACCGTGCCGCCCAACGTGACGAGGAAACAGAGCAGCAATGGCTTCCAATAGTGGGTGGCCAGTTCACGGAGCGACCCGGAGTCGTGGTCCCGCCCGGCCTTGATCGCAGTCAGGCGTTCCTGACTGAGCGATTCATCCATCGTGCGCCGCAACCAGAACACCACGATCGCGGCGCCACCGCCTACGGCGAAGCCGATGCGCCAGCCGAATTCGTGAACCTGCTCGCGGGTGAAGACCGCCAGGATGACTAGCAGGGTGAACTGGGCAAGCACGTGCCCACCCACCAGCGTCACATACTGAAACGACGAGAAGTAGCCGCGCCGCTCCCGCGTCGCGGCCTCAGACATGTACGTCGCCGACGTGCCGTACTCTCCGCCGGTCGCAAATCCCTGGACGAGCCGACACAAAATAAGCAGGATCGGCGCAGCGACGCCAATGCTCGAGCGAGACGGCACCAACGCCACGATCAGCGAACAGGCGGCCATCAGCGACACACTGAACGTCAGCGCGGCCCGGCGGCCGCGGCGGTCGGCAAACCGACCAAGGAACCACGATCCGACGGGCCGGGTCACGAAGGTAACAGCGAAGATCGCGTAGACATAGACCGTCGAGTTGCGATCGGCCCGATCAAAGAATTGGTCCTCGAAATACGTAGCGAACACGGTGTAGACGTAGACGTCATACCACTCGACCAGATTGCCCGACGATCCCCGGATCGTGTTCCAAATGGCCCGACGGGTCTCGGCCTGACTCGGGCGCGATGGAGGTGCAATGGAAACGGTCATGGTGTCCTCCAT > 715 TMEG_03869 NA dicarboxylic_acid_transport_membrane_protein_kGTP EFP25333.1 11 MEDTMTVSIAPPSRPSQAETRRAIWNTIRGSSGNLVEWYDVYVYTVFATYFEDQFFDRADRNSTVYVYAIFAVTFVTRPVGSWFLGRFADRRGRRAALTFSVSLMAACSLIVALVPSRSSIGVAAPILLILCRLVQGFATGGEYGTSATYMSEAATRERRGYFSSFQYVTLVGGHVLAQFTLLVILAVFTREQVHEFGWRIGFAVGGGAAIVVFWLRRTMDESLSQERLTAIKAGRDHDSGSLRELATHYWKPLLLCFLVTLGGTVAFYTYSVNAPAIVKSVYGSQAMTATWINLVGLILLMMLQPIGGMISDKIGRKPLLLWFGVGGLIYTYVLVTYLPETRSPTMSFLLVAVGYVILTGYCSINALVKSELFPAHVRALGVGVGYALANSVFGGTAPLIYQALKERDQVPMFIAYVTACIAVSLIVYVFFIKNKADTYLDREQGFAFYGHA high_GC_Gram+ Mycobacterium_tuberculosis_SUMu005 Mycobacterium_tuberculosis_SUMu005 ADHU01000173 15715..17076 Galagan,J.,_Pepperell,C.,_Hoeppner,V.,_Gagneux,S.,_Small,P.,_Schoolnik,G.,_Feldman,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Mehta,T.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Henn,M.R.,_Nusbaum,C._and_Birren,B. NA 0:1362 Annotation_was_added_to_the_contigs_in_October_2010.##Genome-Assembly-Data-START##Genome_Coverage_::_18.82xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 12-OCT-2010 Mycobacterium_tuberculosis_SUMu005_cont1.173,_whole_genome_shotgun_sequence. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_tuberculosis_E2UFD9_MYCTU.gb Mycobacterium_Lehmann_and_Neumann_1896 290478063 Unpublished NA ADHU01000173 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1362 NA genomic_DNA NA SUMu005 NA Mycobacterium_tuberculosis_var._hominis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 675516 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium,_Mycobacterium_tuberculosis_complex The_Genome_Sequence_of_Mycobacterium_tuberculosis_strain_SUMu005 NA ADHU01000173.1 CTATGCGTGCCCGTAGAATGCAAATCCCTGCTCGCGGTCGAGGTAGGTATCGGCCTTGTTCTTGATGAAAAACACATAGACAATCAGCGAGACCGCTATGCACGCGGTCACGTAGGCGATGAACATCGGCACCTGATCGCGTTCCTTAAGAGCCTGGTAGATCAGCGGCGCGGTGCCGCCGAAGACCGAGTTCGCCAGTGCATAGCCGACTCCGACACCAAGGGCGCGCACGTGCGCGGGGAACAGTTCGGACTTGACCAGTGCATTGATCGAGCAGTATCCGGTCAGAATCACATAGCCGACGGCCACCAATAGAAACGACATTGTCGGCGAACGTGTTTCGGGAAGATAAGTAACAAGGACGTAGGTATAGATGAGTCCGCCGACGCCGAACCACAGCAGCAGTGGCTTGCGGCCGATCTTGTCGCTGATCATGCCCCCGATGGGCTGCAGCATCATCAACAGAATCAGACCAACCAGGTTGATCCAAGTAGCGGTCATCGCCTGCGAACCGTAGACACTCTTGACGATCGCAGGTGCATTGACGCTGTAGGTATAAAACGCGACCGTGCCGCCCAACGTGACGAGGAAACAGAGCAGCAATGGCTTCCAATAGTGGGTGGCCAGTTCACGGAGCGACCCGGAGTCGTGGTCCCGCCCGGCCTTGATCGCAGTCAGGCGTTCCTGACTGAGCGATTCATCCATCGTGCGCCGCAACCAGAACACCACGATCGCGGCGCCACCGCCTACGGCGAAGCCGATGCGCCAGCCGAATTCGTGAACCTGCTCGCGGGTGAAGACCGCCAGGATGACTAGCAGGGTGAACTGGGCAAGCACGTGCCCACCCACCAGCGTCACATACTGAAACGACGAGAAGTAGCCGCGCCGCTCCCGCGTCGCGGCCTCAGACATGTACGTCGCCGACGTGCCGTACTCTCCGCCGGTCGCAAATCCCTGGACGAGCCGACACAAAATAAGCAGGATCGGCGCAGCGACGCCAATGCTCGAGCGAGACGGCACCAACGCCACGATCAGCGAACAGGCGGCCATCAGCGACACACTGAACGTCAGCGCGGCCCGGCGGCCGCGGCGGTCGGCAAACCGACCAAGGAACCACGATCCGACGGGCCGGGTCACGAAGGTAACAGCGAAGATCGCGTAGACATAGACCGTCGAGTTGCGATCGGCCCGATCAAAGAATTGGTCCTCGAAATACGTAGCGAACACGGTGTAGACGTAGACGTCATACCACTCGACCAGATTGCCCGACGATCCCCGGATCGTGTTCCAAATGGCCCGACGGGTCTCGGCCTGACTCGGGCGCGATGGAGGTGCAATGGAAACGGTCATGGTGTCCTCCAT > 716 TMIG_02874 NA transferase EFP43894.1 11 MTGAAGIGLATLAADGSVLDTWFPAPELTESGTSATSRLAVSDVPVELAALIGRDDDRRTETIAVRTVIGSLDDVAADPYDAYLRLHLLSHRLVAPHGLNAGGLFGVLTNVVWTNHGPCAIDGFEAVRARLRRRGPVTVYGVDKFPRMVDYVVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGLGISLGDDCVVEAGLYVTAGTRVTMPDSNSVKARELSGSSNLLFRRNSVSGAVEVLARDGQGIALNEDLHAN high_GC_Gram+ Mycobacterium_tuberculosis_SUMu009 Mycobacterium_tuberculosis_SUMu009 ADHY01000048 631..1941 Galagan,J.,_Pepperell,C.,_Hoeppner,V.,_Gagneux,S.,_Small,P.,_Schoolnik,G.,_Feldman,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Mehta,T.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Henn,M.R.,_Nusbaum,C._and_Birren,B. NA 1307:>1311 Annotation_was_added_to_the_contigs_in_October_2010.##Genome-Assembly-Data-START##Genome_Coverage_::_18.18xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 12-OCT-2010 Mycobacterium_tuberculosis_SUMu009_cont1.48,_whole_genome_shotgun_sequence. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_tuberculosis_E2VGP9_MYCTU.gb Mycobacterium_Lehmann_and_Neumann_1896 290477477 Unpublished NA ADHY01000048 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1311 NA genomic_DNA NA SUMu009 NA Mycobacterium_tuberculosis_var._hominis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 675520 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium,_Mycobacterium_tuberculosis_complex The_Genome_Sequence_of_Mycobacterium_tuberculosis_strain_SUMu009 NA ADHY01000048.1 TTGACCAAAATCAGCCCAACACCTGCCACGACGATGAAGCGGGTTGCGCTGGCATGTCTTGTCGGCTCGGCGATCGAATTCTACGACTTCCTTATCTACGGCACCGCTGCGGCGCTGGTGTTTCCCACCGTGTTCTTCCCACACCTGGATCCCACGGTGGCCGCCGTGGCCTCGATGGGGACATTTGCTGTGGCGTTCCTATCCCGGCCGTTCGGCGCGGCCGTCTTTGGATACTTTGGAGACCGCCTCGGCCGCAAGAAGACCCTGGTCGCCACACTGTTGATCATGGGCCTGGCAACCGTGACTGTCGGGCTGGTTCCAACGACAGTGGCCATCGGCGCCGCGGCCCCACTGATCCTGACGACCATGCGGCTGCTGCAAGGGTTCGCGGTCGGCGGCGAGTGGGCCGGTTCGGCGCTGCTGAGCGCCGAGTACGCGCCCGCCAGCAAACGTGGCTGGTACGGGATGTTCACCGTTGTGGGTGGCGGCATCGCGCTGGTACTGACCAGCCTGACCTTTCTGGGCGTGAACTACACCATTGGCGAAAGCAGCCCCACATTCATGCAGTGGGGGTGGCGCATACCGTTTCTGGTCAGTGCGGCGCTGATCGCCGTCGCCCTATACGTGCGGTTCAACATCGACGAGACCCCGGTGTTCGCCCGGGAAAGGGCAGACGAAAAAACCCGTTTGGGCCCAGCCGAAACGCCGATTGCCCAAGTACTGCGGCGGCAGCGGCGAGAGATAGTCTTGGCCGCCGGCAGCGCCGTTTGCTGCTTCGGCTTCGTCTACCTGGCCAGCACTTACTTGGCCAGCTACGCTCAAACCCGACTGGGGTATTCGCGCGGCAGCATCCTGTTCGACAGTGTGCTGGGTGGACTGCTGTGCATCGTGTTCACCGCGCTTTCTTCCGCTCTTTGCGACCAACTCGGGCGCCGCCGCGTCCTATTGGCCGGGTGGGCGGTGGCTCTACCCTGGTCGCTGTTGGTCATGCCGCTGATCGACTCCGGCAGCCCCAGTTTGTTCGCGGTGGCTGTCGTCGGCATGTATGCCATCGGCGGATTCGGTTTCGGACCCACGGCATCGTTCATCCCAGAACTGTTTGCTACTAGCTACCGATACACGGGCAGCGCGCTCGCGGCGAATCTCGCTGGGGTTGCCGGCGGCGCGCTACCGCCGGTGATTGCCGGCGCGCTGGTGGCAACCTATGGCAGCTGGGCGATCGGTGTCATGCTGGCCATCCTCGCGTTGATCAGCCTGGTATGCACCTATCGGTTGCCCGAAACCGCCGGATCGGCCCTCGTCAGCCGCTAG > 717 TMKG_01696 NA transferase EFP51782.1 11 MTGAAGIGLATLAADGSVLDTWFPAPELTESGTSATSRLAVSDVPVELAALIGRDDDRRTETIAVRTVIGSLDDVAADPYDAYLRLHLLSHRLVAPHGLNAGGLFGVLTNVVWTNHGPCAIDGFEAVRARLRRRGPVTVYGVDKFPRMVDYVVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGLGISLGDDCVVEAGLYVTAGTRVTMPDSNSVKARELSGSSNLLFRRNSVSGAVEVLARDGQGIALNEDLHAN high_GC_Gram+ Mycobacterium_tuberculosis_SUMu011 Mycobacterium_tuberculosis_SUMu011 ADIA01000048 574..1884 Galagan,J.,_Pepperell,C.,_Hoeppner,V.,_Gagneux,S.,_Small,P.,_Schoolnik,G.,_Feldman,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Mehta,T.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Henn,M.R.,_Nusbaum,C._and_Birren,B. NA 1307:>1311 Annotation_was_added_to_the_contigs_in_October_2010.##Genome-Assembly-Data-START##Genome_Coverage_::_15.77xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 12-OCT-2010 Mycobacterium_tuberculosis_SUMu011_cont1.48,_whole_genome_shotgun_sequence. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_tuberculosis_E2W474_MYCTU.gb Mycobacterium_Lehmann_and_Neumann_1896 290472852 Unpublished NA ADIA01000048 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1311 NA genomic_DNA NA SUMu011 NA Mycobacterium_tuberculosis_var._hominis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 675522 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium,_Mycobacterium_tuberculosis_complex The_Genome_Sequence_of_Mycobacterium_tuberculosis_strain_SUMu011 NA ADIA01000048.1 TTGACCAAAATCAGCCCAACACCTGCCACGACGATGAAGCGGGTTGCGCTGGCATGTCTTGTCGGCTCGGCGATCGAATTCTACGACTTCCTTATCTACGGCACCGCTGCGGCGCTGGTGTTTCCCACCGTGTTCTTCCCACACCTGGATCCCACGGTGGCCGCCGTGGCCTCGATGGGGACATTTGCTGTGGCGTTCCTATCCCGGCCGTTCGGCGCGGCCGTCTTTGGATACTTTGGAGACCGCCTCGGCCGCAAGAAGACCCTGGTCGCCACACTGTTGATCATGGGCCTGGCAACCGTGACTGTCGGGCTGGTTCCAACGACAGTGGCCATCGGCGCCGCGGCCCCACTGATCCTGACGACCATGCGGCTGCTGCAAGGGTTCGCGGTCGGCGGCGAGTGGGCCGGTTCGGCGCTGCTGAGCGCCGAGTACGCGCCCGCCAGCAAACGTGGCTGGTACGGGATGTTCACCGTTGTGGGTGGCGGCATCGCGCTGGTACTGACCAGCCTGACCTTTCTGGGCGTGAACTACACCATTGGCGAAAGCAGCCCCACATTCATGCAGTGGGGGTGGCGCATACCGTTTCTGGTCAGTGCGGCGCTGATCGCCGTCGCCCTATACGTGCGGTTCAACATCGACGAGACCCCGGTGTTCGCCCGGGAAAGGGCAGACGAAAAAACCCGTTTGGGCCCAGCCGAAACGCCGATTGCCCAAGTACTGCGGCGGCAGCGGCGAGAGATAGTCTTGGCCGCCGGCAGCGCCGTTTGCTGCTTCGGCTTCGTCTACCTGGCCAGCACTTACTTGGCCAGCTACGCTCAAACCCGACTGGGGTATTCGCGCGGCAGCATCCTGTTCGACAGTGTGCTGGGTGGACTGCTGTGCATCGTGTTCACCGCGCTTTCTTCCGCTCTTTGCGACCAACTCGGGCGCCGCCGCGTCCTATTGGCCGGGTGGGCGGTGGCTCTACCCTGGTCGCTGTTGGTCATGCCGCTGATCGACTCCGGCAGCCCCAGTTTGTTCGCGGTGGCTGTCGTCGGCATGTATGCCATCGGCGGATTCGGTTTCGGACCCACGGCATCGTTCATCCCAGAACTGTTTGCTACTAGCTACCGATACACGGGCAGCGCGCTCGCGGCGAATCTCGCTGGGGTTGCCGGCGGCGCGCTACCGCCGGTGATTGCCGGCGCGCTGGTGGCAACCTATGGCAGCTGGGCGATCGGTGTCATGCTGGCCATCCTCGCGTTGATCAGCCTGGTATGCACCTATCGGTTGCCCGAAACCGCCGGATCGGCCCTCGTCAGCCGCTAG > 718 MT3580.1 identified_by_similarity_to_EGAD:5589;_match_to_protein_family_HMM_PF00083 hypothetical_protein NP_338124.1 11 MVSSMRFALSRRLTVTIVTDVSTRRAGLERGRF high_GC_Gram+ Mycobacterium_tuberculosis_CDC1551 Mycobacterium_tuberculosis_CDC1551 NC_002755 3886204..3887553 Raman,K.,_Yeturu,K._and_Chandra,N. NA 1348:>1350 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE000516.On_Aug_4,_2004_this_sequence_version_replaced_gi:15839372.COMPLETENESS:_full_length. NA 19-JAN-2012 Mycobacterium_tuberculosis_CDC1551_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_tuberculosis_O06339_MYCTU.gb Mycobacterium_Lehmann_and_Neumann_1896 50953765 BMC_Syst_Biol_2,_109_(2008) NA NC_002755 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 19099550 1350 NA genomic_DNA NA CDC1551 NA Mycobacterium_tuberculosis_var._hominis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 83331 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium,_Mycobacterium_tuberculosis_complex targetTB:_a_target_identification_pipeline_for_Mycobacterium_tuberculosis_through_an_interactome,_reactome_and_genome-scale_structural_analysis NA NC_002755.2 CTATGCGTGCCCGTAGAATGCAAATCCCTGCTCGCGGTCGAGGTAGGTATCGGCCTTGTTCTTGATGAAAAACACATAGACAATCAGCGAGACCGCTATGCACGCGGTCACGTAGGCGATGAACATCGGCACCTGATCGCGTTCCTTAAGAGCCTGGTAGATCAGCGGCGCGGTGCCGCCGAAGACCGAGTTCGCCAGTGCATAGCCGACTCCGACACCAAGGGCGCGCACGTGCGCGGGGAACAGTTCGGACTTGACCAGTGCATTGATCGAGCAGTATCCGGTCAGAATCACATAGCCGACGGCCACCAATAGAAACGACATTGTCGGCGAACGTGTTTCGGGAAGATAAGTAACAAGGACGTAGGTATAGATGAGTCCGCCGACGCCGAACCACAGCAGCAGTGGCTTGCGGCCGATCTTGTCGCTGATCATGCCCCCGATGGGCTGCAGCATCATCAACAGAATCAGACCAACCAGGTTGATCCAAGTAGCGGTCATCGCCTGCGAACCGTAGACACTCTTGACGATCGCAGGTGCATTGACGCTGTAGGTATAAAACGCGACCGTGCCGCCCAACGTGACGAGGAAACAGAGCAGCAATGGCTTCCAATAGTGGGTGGCCAGTTCACGGAGCGACCCGGAGTCGTGGTCCCGCCCGGCCTTGATCGCAGTCAGGCGTTCCTGACTGAGCGATTCATCCATCGTGCGCCGCAACCAGAACACCACGATCGCGGCGCCACCGCCTACGGCGAAGCCGATGCGCCAGCCGAATTCGTGAACCTGCTCGCGGGTGAAGACCGCCAGGATGACTAGCAGGGTGAACTGGGCAAGCACGTGCCCACCCACCAGCGTCACATACTGAAACGACGAGAAGTAGCCGCGCCGCTCCCGCGTCGCGGCCTCAGACATGTACGTCGCCGACGTGCCGTACTCTCCGCCGGTCGCAAATCCCTGGACGAGCCGACACAAAATAAGCAGGATCGGCGCAGCGACGCCAATGCTCGAGCGAGACGGCACCAACGCCACGATCAGCGAACAGGCGGCCATCAGCGACACACTGAACGTCAGCGCGGCCCGGCGGCCGCGGCGGTCGGCAAACCGACCAAGGAACCACGATCCGACGGGCCGGGTCACGAAGGTAACAGCGAAGATCGCGTAGACATAGACCGTCGAGTTGCGATCGGCCCGATCAAAGAATTGGTCCTCGAAATACGTAGCGAACACGGTGTAGACGTAGACGTCATACCACTCGACCAGATTGCCCGACGATCCCCGGATCGTGTTCCAAATGGCCCGACGGGTCTCGGCCTGACTCGGGCGCGATGGAGGTGCAATGGAAACGGTCAT > 719 MUL_1444 membrane_protein;_thought_to_be_involved_in_transport_of_sugar_across_the_membrane._responsible_for_the_translocation_of_the_substrate_across_the_membrane. sugar-transport_integral_membrane_protein_SugI YP_905447.1 11 MQRGILVALTAASVGLIYGYDLSIIAGAQLFITEEFGLSTHQQELLTTMVVIGQIVGALGAGVLANAIGRKKSVVMLLVAYTMFAVLGALSVSLPMLLAARFLLGLAVGVSIVVVPVYVAESAPAAVRGSLLTVYQLTTVSGLIVGYLTGYLLAGTHSWRWMLGLATVPAMLLLPLLIRMPDTPRWYVMKGRIQEARAALLRVDPAADVEEELAEIGTALSEGSGGVSEMLRPPFLRATIFVITLGFLIQITGINAIIYYSPRIFEAMGFTGDFALLGLPALVQIAGVAAVITSLLLVDRVGRRPILLSGIAIMIVADVALMAVFARGQGAAILGFAGILLFIIGYTMGFGSLGWVYASESFPTRLRSIGSSTMLTANLIANAIVAAVFLTMLHSLGGSGAFAVFGVLALVAFGVVYRYAPETKGRQLEEIRHFWENGGRWPEKLTEAP high_GC_Gram+ Mycobacterium_ulcerans_Agy99 Mycobacterium_ulcerans_Agy99 NC_008611 1559007..1560356 Stinear,T.P.,_Seemann,T.,_Pidot,S.,_Frigui,W.,_Reysset,G.,_Garnier,T.,_Meurice,G.,_Simon,D.,_Bouchier,C.,_Ma,L.,_Tichit,M.,_Porter,J.L.,_Ryan,J.,_Johnson,P.D.,_Davies,J.K.,_Jenkin,G.A.,_Small,P.L.,_Jones,L.M.,_Tekaia,F.,_Laval,F.,_Daffe,M.,_Parkhill,J._and_Cole,S.T. NA 0:1350 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000325.Source_DNA_is_available_from_Dr_Tim_Stinear,_DepartmentMicrobiology,_Monash_University,_Melbourne,_Australia,tim.stinear@med.monash.edu.au;_Bacteria_are_available_from_Dr_JanetFyfe,_Mycobacterial_Reference_Laboratory,_Victorian_InfectiousDiseases_Reference_Laboratory,_Melbourne,_Australia,Janet.Fyfe@mh.org.au.COMPLETENESS:_full_length. NA 25-JAN-2012 Mycobacterium_ulcerans_Agy99_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_ulcerans_A0PNQ7_MYCUA.gb Mycobacterium_Lehmann_and_Neumann_1896 118615919 Genome_Res._17_(2),_192-200_(2007) NA NC_008611 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 17210928 1350 NA genomic_DNA NA Agy99 NA Mycobacterium_ulcerans_MacCallum_et_al._1950 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 362242 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium Reductive_evolution_and_niche_adaptation_inferred_from_the_genome_of_Mycobacterium_ulcerans,_the_causative_agent_of_Buruli_ulcer NA NC_008611.1 TCATGGAGCTTCCGTCAGCTTCTCCGGCCAGCGTCCGCCGTTCTCCCAGAAGTGCCGAATTTCCTCGAGCTGGCGGCCCTTGGTTTCCGGGGCGTAGCGGTAGACGACGCCGAACGCCACCAGCGCGAGCACCCCGAATACGGCGAACGCTCCCGAACCACCGAGTGAATGCAACATGGTGAGGAAGACGGCGGCAACGATCGCGTTCGCGATGAGGTTGGCGGTCAGCATGGTGCTCGACCCGATGGAACGTAGCCGGGTGGGGAAGCTTTCGCTGGCGTAGACCCAGCCCAGGGAGCCAAAGCCCATCGTGTAGCCGATGATGAACAGCAAGATGCCTGCGAACCCCAGTATCGCTGCGCCCTGTCCGCGGGCGAACACGGCCATCAGCGCGACGTCGGCAACGATCATGATGGCGATGCCCGACAACAGGATTGGCCGACGGCCCACGCGGTCCACCAGCAGCAGGGAGGTGATCACGGCCGCCACACCGGCGATCTGAACCAGCGCCGGCAATCCCAGGAGGGCGAAATCGCCAGTGAAGCCCATGGCTTCGAAGATCCGCGGACTGTAGTAGATGATGGCGTTGATCCCGGTGATCTGGATCAAGAAGCCCAGCGTGATCACAAAGATGGTGGCGCGCAGAAAGGGCGGTCGCAGCATTTCGGACACGCCGCCGCTACCTTCACTCAACGCGGTGCCGATCTCGGCCAGTTCTTCCTCGACATCGGCGGCGGGGTCCACCCGCAGCAGCGCCGCGCGGGCCTCCTGGATGCGGCCCTTCATCACATACCACCGGGGCGTGTCGGGCATGCGGATCAACAAGGGCAGCAACAGCATTGCGGGGACGGTGGCCAGTCCCAGCATCCAGCGCCAGCTGTGCGTACCGGCCAGCAGGTACCCGGTGAGATAGCCGACGATGAGTCCGCTGACGGTGGTGAGTTGGTAGACCGTGAGCAGCGATCCGCGCACCGCGGCCGGAGCGGATTCCGCGACATAGACCGGCACCACGACAATCGAGACGCCGACGGCCAGACCCAGCAAGAAGCGCGCCGCCAACAGCATCGGTAGCGACACCGACAGCGCGCCCAGCACCGCGAACATCGTGTAGGCGACGAGCAGCATCACCACCGACTTTTTGCGCCCGATCGCATTGGCCAGTACGCCGGCGCCCAGCGCTCCCACGATCTGACCGATCACCACCATCGTGGTCAGCAGCTCCTGCTGGTGGGTGCTCAGGCCGAATTCTTCGGTGATGAACAGCTGCGCGCCGGCGATGATGGATAGGTCGTATCCGTAGATGAGCCCGACGCTGGCCGCGGTCAGCGCGACCAGGATGCCCCGTTGCAC > 720 MUL_3187 Detected_in_the_membrane_fraction_by_proteomics_(LC-_MS/MS);_membrane_protein;_involved_in_active_transport_of_unknown_sugars_across_the_membrane._responsible_for_the_translocation_of_the_substrate_across_the_membrane. sugar_transporter YP_906876.1 11 MIGLGGVWVLDGLEVTMVGNVSARLTEHGSGINLTPAQIGVAASFYIAGACLGALFFGHLTDRFGRRNLFLLTLAVYLTATVATAFAFAPWYFFIARFFTGSGIGGEYAAINSAIDELIPARVRGRVDLIINGTYWLGSAAGAAGALVLLDTSNFAPNMGWRLAFGLGAIFGIFVLLVRRNVPESPRWLFIHGREQEAEQIVREIEEEVERDTGQRLPDPPGRPLKIRQRQRISLWEIARVAFTRYPRRAFLGLALFIGQAFLYNGVTFNLGTLLSGFYGVESGHVPLFFIVWALSNFVGPLVLGRLFDTVGRKPMITMSYIGSAVIAVVLAVIFVNQTGGVWTFIIVLAAAFFLASAGASAAYLTVSEIFPMETRALAIAFFYAVGTAIGGISGPLLFGQLIESGQRSQVFWSFIIGAAVMAVAGLVELWLGIAAEQRPLEELALPLTVVDAEDDDEPADGAGARGAQHPGS high_GC_Gram+ Mycobacterium_ulcerans_Agy99 Mycobacterium_ulcerans_Agy99 NC_008611 3553400..3554821 Stinear,T.P.,_Seemann,T.,_Pidot,S.,_Frigui,W.,_Reysset,G.,_Garnier,T.,_Meurice,G.,_Simon,D.,_Bouchier,C.,_Ma,L.,_Tichit,M.,_Porter,J.L.,_Ryan,J.,_Johnson,P.D.,_Davies,J.K.,_Jenkin,G.A.,_Small,P.L.,_Jones,L.M.,_Tekaia,F.,_Laval,F.,_Daffe,M.,_Parkhill,J._and_Cole,S.T. NA 0:1422 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000325.Source_DNA_is_available_from_Dr_Tim_Stinear,_DepartmentMicrobiology,_Monash_University,_Melbourne,_Australia,tim.stinear@med.monash.edu.au;_Bacteria_are_available_from_Dr_JanetFyfe,_Mycobacterial_Reference_Laboratory,_Victorian_InfectiousDiseases_Reference_Laboratory,_Melbourne,_Australia,Janet.Fyfe@mh.org.au.COMPLETENESS:_full_length. NA 25-JAN-2012 Mycobacterium_ulcerans_Agy99_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_ulcerans_A0PST6_MYCUA.gb Mycobacterium_Lehmann_and_Neumann_1896 118615919 Genome_Res._17_(2),_192-200_(2007) NA NC_008611 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 17210928 1422 NA genomic_DNA NA Agy99 NA Mycobacterium_ulcerans_MacCallum_et_al._1950 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 362242 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium Reductive_evolution_and_niche_adaptation_inferred_from_the_genome_of_Mycobacterium_ulcerans,_the_causative_agent_of_Buruli_ulcer NA NC_008611.1 TCAGCTCCCGGGGTGCTGCGCGCCCCGCGCGCCCGCCCCATCGGCCGGTTCGTCGTCGTCCTCGGCGTCGACCACCGTCAGCGGCAGCGCCAACTCTTCCAGCGGGCGCTGTTCGGCGGCGATGCCGAGCCAGAGTTCGACCAGGCCGGCCACGGCCATCACCGCGGCACCGATGATGAACGACCAGAACACCTGGCTACGCTGCCCGGACTCGATCAGCTGACCGAACAGCAGCGGGCCGCTGATGCCGCCGATCGCGGTGCCCACCGCGTAGAAGAAGGCGATGGCCAGGGCTCGGGTCTCCATCGGGAAGATCTCGCTGACCGTCAGGTAGGCCGCGCTCGCGCCCGCCGATGCCAGGAAGAACGCCGCCGCCAACACGATGATGAACGTCCAGACACCGCCGGTCTGGTTCACAAATATCACCGCGAGCACCACGGCTATCACCGCGGATCCGATGTAGGACATCGTGATCATGGGCTTGCGGCCGACGGTATCGAAGAGCCGCCCCAGCACCAGGGGCCCGACAAAGTTGCTCAGCGCCCACACGATGAAAAACAGCGGCACGTGTCCGGATTCGACACCGTAGAAGCCGCTTAGCAACGTGCCGAGATTGAACGTGACCCCGTTGTAGAGAAACGCTTGACCGATGAACAGCGCCAGCCCAAGAAAGGCCCGCCGCGGATAGCGGGTAAACGCGACTCGGGCGATCTCCCACAAGGAAATCCTTTGACGCTGACGTATCTTGAGCGGCCGCCCCGGCGGGTCAGGTAACCGCTGGCCGGTGTCGCGTTCTACTTCCTCCTCGATCTCCCGAACGATCTGCTCGGCTTCCTGCTCACGCCCATGAATGAACAGCCAGCGTGGGCTTTCCGGGACGTTGCGCCGGACCAGCAGCACAAAGATGCCGAAGATGGCACCCAAGCCGAAGGCAAGCCGCCACCCCATGTTGGGCGCGAAATTCGAGGTGTCCAACAGGACCAGCGCCCCGGCCGCTCCAGCGGCCGAACCCAGCCAATAGGTGCCGTTGATGATCAGGTCAACGCGGCCGCGCACGCGGGCGGGTATCAGTTCGTCGATCGCCGAGTTGATCGCGGCGTACTCTCCCCCGATGCCGGAGCCGGTGAAGAAACGCGCGATGAAGAAATACCAAGGTGCGAAGGCGAATGCGGTGGCCACGGTGGCCGTCAGGTACACCGCGAGGGTCAACAGAAACAGGTTGCGCCGCCCGAAGCGGTCGGTGAGGTGGCCGAAGAACAGTGCCCCCAGGCAGGCCCCGGCGATGTAGAACGACGCCGCCACGCCGATCTGCGCGGGCGTCAGGTTGATCCCGCTGCCATGCTCGGTCAGCCGCGCCGACACGTTGCCGACCATGGTGACTTCGAGCCCGTCGAGGACCCACACGCCACCAAGCCCGATCAC > 721 Mvan_5839 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_mmc:Mmcs_3913_general_substrate_transporter general_substrate_transporter YP_956610.1 11 MGMPTTHEDPPPGVLKKAISASAIGNATEWFDYGIYAYGVSYISAAIFPGDAANATLLALMTFAVSFLVRPLGGFVWGPLGDRLGRKRVLAITIVLMAGATFCVALVPTYDMIGMWAPFLLVLLRMIQGFSTGGEYGGAATFMAEYAPNRRRGLLGSFLEFGTLGGFSLGALLMLGCSLVLGDEQMHAWGWRLPFLVAAPLGLIGLYLRSRLEDTPVFRELEAKGGTEPETTTQFRDLLGRYWRPILQLGGLVVALNVVNYTLLSYMPTYLENRIGLSPDQSLIVPVIGMLSMMVFVPFAGLLSDRVGRKPLWWFSLIGLFVAGVPMFLLMGTNLWGAVIGFAVLGLLYVPQLATISATFPAMFPTQVRYAGFAIAYNVSTSLFGGTAPAINQWLTGETGDLLFPAYYMMGACVIGAIALIKVPETARCPIGGTVTPGTEEAADPVPFEKQNA high_GC_Gram+ Mycobacterium_vanbaalenii_PYR-1 Mycobacterium_vanbaalenii_PYR-1 NC_008726 6225506..6226867 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Singan,V.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Anderson,I.J.,_Miller,C._and_Richardson,P. NA 0:1362 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000511.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000382Source_DNA_and_bacteria_available_from_Charles_Miller(cdmiller@biology.usu.edu)Contacts:_Charles_Miller_(cdmiller@biology.usu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-PGFFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 08-NOV-2011 Mycobacterium_vanbaalenii_PYR-1_chromosome,_complete_genome. NA Mycobacteriaceae_Chester_1897_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Mycobacterium_vanbaalenii_A1THF4_MYCVP.gb Mycobacterium_Lehmann_and_Neumann_1896 120401028 Unpublished NA NC_008726 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1362 NA genomic_DNA NA PYR-1 NA Mycobacterium_vanbaalenii_Khan_et_al._2002 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 350058 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Mycobacteriaceae,_Mycobacterium Complete_sequence_of_Mycobacterium_vanbaalenii_PYR-1 NA NC_008726.1 GTGGGTATGCCCACCACCCACGAAGACCCACCGCCGGGAGTCCTGAAGAAAGCCATCTCCGCATCGGCGATCGGCAACGCGACCGAATGGTTCGACTACGGGATCTACGCCTACGGGGTCTCCTACATCTCCGCGGCGATCTTCCCCGGGGACGCCGCGAACGCGACGCTGCTGGCCTTGATGACGTTCGCCGTCTCGTTCCTGGTCCGTCCGCTCGGCGGATTCGTCTGGGGGCCGCTCGGTGACCGTCTGGGCCGCAAGCGGGTGCTGGCCATCACCATCGTGCTGATGGCCGGCGCCACGTTCTGCGTGGCCCTGGTGCCCACCTACGACATGATCGGCATGTGGGCGCCGTTCCTGCTGGTGCTGCTCCGGATGATCCAGGGCTTCTCGACCGGCGGTGAGTACGGCGGCGCCGCGACGTTCATGGCCGAGTACGCGCCGAACAGGCGCCGCGGGCTGCTCGGCAGTTTCCTCGAGTTCGGCACCCTCGGCGGGTTCTCTCTGGGCGCGTTGCTGATGCTGGGTTGCTCGCTGGTTCTGGGCGACGAGCAGATGCACGCGTGGGGCTGGCGGCTGCCGTTCCTGGTGGCCGCGCCGCTCGGCCTGATCGGTCTCTATCTGCGATCGCGGCTGGAGGACACCCCGGTGTTCCGGGAGCTCGAAGCGAAGGGTGGGACGGAACCGGAGACCACCACCCAGTTCCGCGACCTGCTGGGCCGGTACTGGCGACCGATCCTGCAGCTCGGCGGACTGGTGGTCGCGCTGAACGTCGTGAACTACACCCTGCTGTCCTACATGCCGACGTACCTGGAGAACAGGATCGGGCTGTCACCGGACCAGTCGCTGATCGTGCCCGTGATCGGCATGCTGTCGATGATGGTCTTCGTCCCATTCGCCGGGCTGCTCAGCGATCGGGTGGGACGGAAACCGCTGTGGTGGTTCTCGTTGATCGGCCTGTTCGTCGCCGGCGTGCCGATGTTCCTGTTGATGGGCACCAACCTGTGGGGTGCGGTGATCGGCTTCGCCGTCCTCGGCCTGCTGTACGTGCCACAGCTGGCGACGATCTCGGCGACGTTCCCGGCGATGTTCCCCACCCAGGTGCGCTACGCCGGATTCGCCATCGCCTACAACGTGTCGACGTCGCTGTTCGGCGGCACCGCGCCGGCGATCAATCAGTGGCTCACCGGCGAAACCGGCGACCTGCTGTTCCCGGCGTACTACATGATGGGCGCGTGCGTCATCGGCGCCATCGCGCTGATCAAGGTGCCCGAGACCGCACGTTGTCCGATCGGCGGCACCGTCACGCCCGGCACGGAGGAGGCGGCGGATCCGGTGCCGTTCGAGAAGCAGAACGCCTGA > 722 NECHADRAFT_90242 NA hypothetical_protein XP_003053701.1 NA MAPNQGDEDVQALSRTPHEFPYSSMIEHARRPSEAYVNLHANVEAKIKNPLWGIPRSRLMADVDDFCRKKDLDDYRHLIRQGALVAQDPTGYEDIDGDEKLNDDEIEALRNEILHKWRVPFVLYLTVATCSIGAAVQGWDQTGSNGANLEFPYAFDIGSNSIRDKLLVGLVNSAPYIGTAFFGCWLSDPLNQRFGRRGTIFFSANFCLWPVIGSALFPIFAAENSPAPIRGAFVMSWQMWTAFGIFLGTCANVAVTKIGHNAWRYQLGSAFIPAVPLLILIYFCPESPRWYMKKNRYRDALQSLLRLRNHPVQAARDLYYIHAQLELEFEFIKKGNYINRFIELFTIPRVRRATLASFVVMIAQQMCGINIIAFYSTSVFKESGANDNQALLASMGFGLVNFVFAWPAVWTIDTFGRRSLLLFTFPQMAWTLLAAGLCTLIPGTGGAHLGLVAMFVYLFAAFYSPGEGPVPYAYSAEVFPLSHREVGMSWAVATCLFWAAVLSITFPLMLDRLHAIGAFGLYSGFNFIALIMIFLWLPETKQRTLEELDYIFAVPTRVFMKYQVTKALPWWIRRWILFQRDVTLEPLYQFDVGEPEDSHSTDAGYENDKAKVELKDTVGLTNAI Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003053655 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1875 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315881).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_predicted_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7YHW6_NECH7.gb Nectria 302923557 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003053655 NA NA pyrenomycetes sac_fungi 19714214 1875 1 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003053655.1 ATGGCGCCGAACCAAGGTGACGAGGATGTGCAAGCCCTTTCAAGGACTCCCCACGAATTCCCTTACAGTTCCATGATTGAGCATGCGCGTCGTCCTTCAGAAGCCTATGTCAACCTGCATGCCAATGTCGAAGCCAAGATCAAGAACCCTTTATGGGGCATCCCCCGGTCAAGGTTAATGGCCGACGTCGATGACTTTTGTCGCAAGAAGGACCTCGACGACTATCGCCATCTCATCCGACAGGGCGCCCTCGTTGCCCAGGATCCCACTGGTTATGAAGATATTGATGGCGACGAGAAGCTCAACGACGACGAGATCGAAGCGCTTAGGAATGAGATCCTCCACAAGTGGCGCGTCCCCTTCGTTCTATACCTGACTGTTGCTACCTGCTCTATCGGTGCTGCCGTGCAAGGATGGGATCAGACGGGCTCAAACGGTGCCAATCTTGAGTTTCCGTATGCATTCGATATTGGATCCAACAGTATCCGAGATAAGCTCCTGGTCGGCCTCGTCAACTCTGCGCCGTACATCGGTACTGCGTTCTTTGGATGCTGGCTATCAGACCCTCTAAATCAGCGTTTCGGCCGTCGAGGGACAATCTTCTTCTCGGCCAACTTTTGTCTCTGGCCCGTTATTGGAAGCGCGCTGTTCCCCATCTTTGCTGCCGAAAACTCGCCCGCCCCGATCCGAGGAGCTTTTGTCATGAGCTGGCAGATGTGGACAGCATTTGGCATCTTTCTCGGAACTTGCGCAAACGTGGCCGTCACCAAGATTGGCCACAACGCTTGGAGGTATCAGCTTGGGTCGGCCTTCATCCCCGCCGTGCCCCTGTTGATATTGATCTACTTCTGCCCCGAGTCACCGCGTTGGTACATGAAGAAGAATCGCTATAGAGACGCATTACAGTCCTTGCTTCGTCTACGGAATCACCCTGTGCAGGCCGCTCGAGACTTGTATTACATTCATGCGCAGCTTGAGCTCGAATTCGAATTTATTAAGAAGGGCAACTATATAAACCGCTTCATCGAGCTGTTCACGATCCCCCGAGTACGCCGAGCCACCCTCGCCTCGTTTGTTGTCATGATCGCACAGCAAATGTGCGGCATCAACATCATCGCGTTTTACTCGACGAGCGTTTTCAAGGAATCAGGGGCCAACGACAACCAGGCACTGCTGGCCTCAATGGGGTTTGGACTCGTCAACTTCGTCTTTGCATGGCCCGCAGTCTGGACTATTGATACCTTTGGACGACGGTCTCTGCTCTTGTTCACCTTTCCTCAGATGGCATGGACGCTCCTTGCTGCTGGACTGTGCACTCTGATACCTGGGACAGGCGGAGCTCATCTTGGCCTTGTGGCCATGTTTGTTTACCTCTTTGCGGCCTTTTACTCACCCGGTGAGGGCCCAGTGCCGTATGCATACTCAGCCGAAGTGTTTCCTCTATCGCATCGTGAAGTTGGCATGTCGTGGGCTGTGGCAACGTGCTTATTCTGGGCGGCTGTCCTGTCCATCACGTTTCCCCTGATGCTCGACAGGCTGCACGCGATAGGGGCCTTTGGTCTGTACTCGGGCTTCAACTTTATTGCGCTCATCATGATCTTCCTCTGGCTGCCAGAAACGAAGCAGCGGACGCTAGAGGAGCTCGATTACATCTTTGCGGTGCCTACCCGCGTCTTCATGAAGTACCAGGTGACCAAGGCACTCCCATGGTGGATCAGACGATGGATCTTGTTCCAGCGAGACGTGACGCTGGAACCTCTATATCAGTTCGACGTTGGCGAACCTGAAGACAGTCATAGCACCGATGCCGGATACGAGAACGACAAGGCCAAGGTTGAGCTCAAAGACACTGTTGGGCTGACGAATGCCATATGA > 723 NECHADRAFT_99033 NA hypothetical_protein XP_003054680.1 NA MPPPRVDDEAPFQEYGDNSHRNSSNGTHDEKVTTGERRASTAALLRNPLMGLSRDQVLADVDAFVEEKGLQEHREDFRKGALVAQVNNQAGAFERIDMLTEEEKGILRKEETHRWHQPFALYFLCTLCAGSAIVQGMDQTTVNGAQEFYFVEFDITNVWMKGFTNGAPYLCSALIGCWTSPILNKWTGRRGTIFISCLMSTVTGFWMAASTSLGNFLAARFMLGFAVGAKSSTTPVYSAESTPKNIRGALTMMWQATFQNVTIIGGETSPWRWMMASTSVPPLIVMLQVYFCPESPRWYMEKGRFDKAYRSVRRLRFSGVQAARDMYYAYKLLEIERGEREGRNLLKEFFTVRRNRRAAQSAWFCMFMQQFCGVNVIAYYSTSIFQNASYSLSEALLVSMGGGIINFLFAIPAIYTIDTFGRRNLLLVTFPLMAACLFFTAGTFQIDAGNAYSQARIGCITTGLYLFMAVYSPGLGPVPFTYSAEAFPLHVRDIGMASSTAITWGFNFIISLTWPPLTEKITDTGGFCWYGAWNIFGWIFCYFLLPETKNLTLEELDNVFNVTNREHAGYYSRKLPWYLKKYLLRQDVLPFPPLYEFAANDGYYPNEKPSTRHAENYTTRTNSEDDQVLAGRN Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003054634 1..1902 Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1902 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315881).COMPLETENESS:_incomplete_on_the_5_end. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_predicted_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7YJF5_NECH7.gb Nectria 302928318 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003054634 NA NA pyrenomycetes sac_fungi 19714214 1902 1 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003054634.1 ATGCCACCTCCACGGGTAGATGATGAAGCTCCCTTCCAGGAGTACGGCGACAACAGCCACCGAAACTCCAGCAATGGCACCCACGACGAAAAGGTGACGACCGGCGAGCGCCGGGCGTCTACAGCTGCCCTGCTACGCAACCCCTTGATGGGGCTGAGCAGAGACCAGGTTCTCGCTGACGTTGATGCCTTTGTCGAGGAGAAGGGCCTGCAAGAGCACCGCGAGGATTTCCGCAAGGGAGCTCTCGTCGCGCAAGTCAACAACCAGGCTGGCGCCTTTGAGCGGATTGATATGCTCACGGAAGAGGAGAAAGGTATTCTTCGAAAGGAAGAGACTCATCGTTGGCACCAGCCCTTTGCACTTTACTTTCTCTGTACTCTCTGTGCGGGATCAGCTATTGTGCAAGGTATGGATCAGACGACAGTAAACGGAGCCCAGGAATTCTACTTTGTAGAGTTTGACATCACCAATGTTTGGATGAAGGGATTCACCAATGGAGCTCCCTACCTCTGCTCTGCCCTCATCGGATGCTGGACCAGTCCCATTCTAAACAAGTGGACTGGACGTCGAGGAACAATCTTTATCTCTTGCCTTATGTCTACTGTTACTGGCTTCTGGATGGCTGCGTCTACATCTCTTGGAAACTTTCTTGCTGCTCGTTTCATGCTCGGGTTTGCCGTTGGCGCCAAGTCTAGCACTACACCTGTGTACTCTGCAGAGTCTACGCCTAAGAACATCCGTGGCGCACTCACTATGATGTGGCAGGCAACCTTCCAAAACGTCACAATCATCGGCGGTGAAACATCACCCTGGCGTTGGATGATGGCATCCACCTCAGTCCCCCCTCTCATCGTCATGCTTCAAGTCTACTTCTGCCCCGAGAGTCCCCGCTGGTACATGGAAAAGGGCCGCTTTGACAAGGCCTACCGATCAGTGAGGCGACTGCGCTTCTCTGGTGTCCAGGCTGCACGAGACATGTACTATGCCTACAAGTTGCTTGAGATTGAACGTGGTGAGCGAGAGGGACGGAACTTGCTCAAGGAGTTCTTTACTGTTCGTCGAAATCGACGTGCGGCTCAGAGTGCTTGGTTTTGCATGTTCATGCAACAATTCTGTGGTGTGAACGTCATTGCATACTATTCGACTTCCATCTTTCAAAACGCCAGCTACAGTCTGTCCGAGGCTCTCCTCGTGTCCATGGGCGGCGGCATCATCAACTTCCTGTTTGCCATCCCGGCAATCTACACGATTGATACTTTTGGCCGCCGCAATCTGCTGCTGGTCACGTTTCCTCTCATGGCAGCCTGTCTCTTCTTCACCGCCGGGACATTCCAGATCGACGCGGGCAACGCCTACAGTCAAGCCCGAATCGGTTGCATCACCACAGGGTTATATCTATTCATGGCCGTCTACTCGCCCGGTCTAGGTCCAGTGCCATTCACGTACAGCGCTGAAGCATTCCCTCTTCACGTACGAGACATTGGCATGGCCTCCAGTACCGCCATAACATGGGGATTCAACTTCATCATCAGTCTCACATGGCCACCCCTGACGGAGAAAATCACAGATACTGGTGGCTTCTGTTGGTACGGAGCATGGAACATCTTTGGCTGGATTTTCTGCTACTTCCTCCTCCCAGAGACAAAGAACCTGACTCTGGAAGAACTCGATAACGTGTTCAACGTCACCAACCGGGAGCATGCTGGGTACTACAGCAGGAAGCTGCCCTGGTATTTGAAGAAGTACCTCCTCCGCCAAGATGTCCTTCCTTTCCCTCCTTTGTACGAGTTTGCGGCCAATGATGGGTATTATCCCAACGAGAAGCCGTCTACACGTCATGCGGAGAACTACACCACCAGGACAAACTCTGAGGACGACCAAGTCCTGGCTGGGCGTAATTAG > 724 NECHADRAFT_30952 NA hypothetical_protein XP_003054005.1 NA MRSDAWLSKPFLTAIFLGIGGFLYGFDSGIITPSLALNSFLTYFGNPHAALRGAIVSVYQAGAWLGSASVGVTSDRLGRRKAIAFGCIWGVIGGALMAGAAHVAMLIMGRLLIGFAVGTITGVAPVFGAEIAKARPLPNSPQTNERAKITAVNQMMVAWGFFVALWTGVGEGKWHNPNQWRLGFAIQSIPALLLGVGVLFLSESPRWLCLKGRYEEAEKAFRNYHYDGTNDEWCRTEFTVIQVNIAEELQAQGKLSWADLIKTSAFRKRLFVGSFVWAAAMLSGISFVQYYQTAIYATLQFDQDRQLLVSGLYGSVAPVACFLSLFFVDKIGRRKILVISSSLLSLCYMIITILAALYPARPGLPTNAAAQRGLIACIFAVSANYSALLGPMTWIIPPEVFTTELRAKANAIVQVVHYSISLIITQCSPIALAEVGWKYYILFVLTNALCAVVFAFAYPETRGKSLEEIDEIFGDVKVIRQEDVKFSEKAGLETLEYRGNRTSAQEA Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003053959 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1524 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315881).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_predicted_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7YJK9_NECH7.gb Nectria 302924972 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003053959 NA NA pyrenomycetes sac_fungi 19714214 1524 1 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003053959.1 ATGAGGAGTGACGCTTGGCTTAGCAAGCCGTTCTTGACGGCCATCTTTCTTGGAATAGGAGGTTTCCTCTATGGCTTCGATTCTGGAATCATCACGCCGAGTCTGGCTCTCAACTCCTTTTTGACTTACTTTGGGAACCCTCATGCCGCTCTCCGTGGTGCCATTGTCTCTGTCTACCAGGCAGGAGCATGGCTGGGTAGTGCGTCTGTTGGCGTCACCAGTGATAGACTGGGTCGACGCAAGGCCATTGCTTTTGGCTGCATTTGGGGTGTGATTGGCGGTGCCCTGATGGCTGGTGCAGCTCATGTTGCCATGCTTATCATGGGCCGTCTTTTGATCGGCTTTGCTGTTGGAACCATCACCGGAGTTGCCCCTGTTTTCGGCGCTGAGATTGCCAAGGCACGACCTCTTCCTAACTCTCCCCAGACCAATGAGCGAGCCAAGATTACCGCAGTCAACCAAATGATGGTCGCCTGGGGCTTTTTCGTCGCCCTCTGGACTGGCGTCGGTGAAGGCAAATGGCACAACCCCAACCAATGGCGTCTCGGCTTTGCCATCCAGAGTATCCCAGCTCTTCTCCTCGGTGTCGGAGTTCTCTTCCTCAGCGAGTCCCCCCGCTGGCTTTGCTTGAAGGGCCGCTACGAGGAGGCTGAAAAGGCATTCCGCAACTACCACTACGACGGTACGAACGACGAGTGGTGCCGTACTGAGTTTACCGTTATTCAGGTCAACATTGCGGAGGAGCTTCAGGCACAGGGCAAGCTTTCTTGGGCCGATCTCATCAAGACCTCTGCTTTCAGGAAACGTCTCTTTGTCGGCTCTTTCGTCTGGGCTGCTGCCATGTTGTCTGGTATCTCGTTTGTGCAGTACTACCAGACTGCCATCTACGCTACCCTCCAGTTCGACCAGGACCGTCAGCTTCTCGTCAGTGGTCTGTACGGTTCAGTTGCCCCCGTGGCCTGCTTCCTGTCGCTATTCTTTGTCGACAAGATTGGCCGCAGAAAGATTCTGGTCATCAGCTCTTCGCTGTTGTCCCTTTGCTACATGATCATTACGATTCTTGCGGCTTTGTATCCTGCTCGTCCTGGTCTGCCTACCAACGCTGCAGCTCAGAGGGGTCTGATTGCCTGCATCTTTGCCGTTTCGGCCAACTACTCGGCCCTGCTTGGACCCATGACCTGGATTATTCCTCCCGAGGTTTTCACTACTGAGCTTCGTGCCAAGGCAAACGCCATTGTCCAGGTTGTTCACTACTCGATCAGCTTGATCATTACTCAATGCTCGCCCATCGCCCTGGCCGAGGTGGGCTGGAAGTACTACATTCTGTTCGTTTTGACCAACGCTCTCTGCGCCGTCGTCTTCGCATTCGCATATCCCGAAACCCGAGGCAAGTCTCTCGAGGAGATTGACGAGATCTTTGGTGATGTCAAGGTTATCCGCCAGGAGGATGTCAAGTTCTCTGAAAAGGCTGGACTCGAGACACTGGAATATCGTGGCAACAGGACAAGTGCACAGGAAGCTTAG > 725 NECHADRAFT_77297 NA hypothetical_protein XP_003052853.1 NA MSINPIQGQDSGPDGQNDVVDEKRLHPSSKEGRSRWRWWQPMDEEARYLTTINYSSAEREKRIFELVDDNGFNFKVFFVAASGFMASSYTLFATNVIAPAIAFVYPSCTLNNQASSVIDILTLVGSICGMLIMGHLADRGGRKKLYGLELLFLIVSTMGVTQASNGVLSENNKPSMDIYGWLAWWRIALGFGIGAEATVIVAEWASTKSRGLMLALVKSMQSLARLLAVGIGLWALKALRLMDDEWETNGDNSVNPSASDQAKWVIDMLWRCVIGVAMLPAFVAIIARVTIPETPRYHADIRKDLRQAVKNSLRVYKGKKVKETNTHAAEPPLDDDSDRWFTGAWDYLKKDSHLGLRNLCLISLLWGLMDVGFYGLSLDSPMVLSILRNKWVEKDGSDNCTTGNAWPWKVPTWRPRFEPDWNIYKVLERTSVESLEIVSVASTMGSIAALLMVNYFRRKRILLVTFLMSAVLFTTTGAILISTYCLKDEQGHCRDNEGYRKVVIVFYAITQFVYNAGPNTIIFVLAAEIFPTVYRGTFYGIAAATGKVGAIIIRGIILHFGDSHRVLAIRLLAFGPLMLVAAFLSWYLPDVQYPSVAKPRDVEASMGSRVDSTLNDPVRVDEAEAACPPRASESLEDNMMLSDIDLDSVYSSESGRVSRLLSEKPAGFFSRLENLTLEQVAPTPHRKRRKGRPGTVHETPASHSPTVASATGALPVSPGVLGNEVNRR Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003052807 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:2187 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315880).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7YKU4_NECH7.gb Nectria 302919386 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003052807 NA NA pyrenomycetes sac_fungi 19714214 2187 3 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003052807.1 ATGTCTATCAATCCAATCCAAGGGCAGGATAGTGGCCCTGATGGCCAGAATGATGTGGTTGACGAGAAACGTCTACACCCTTCGTCTAAAGAGGGCCGCTCAAGATGGCGGTGGTGGCAGCCCATGGATGAGGAGGCCAGATACTTGACCACTATTAACTACAGCAGCGCAGAGCGAGAAAAACGCATCTTCGAGCTTGTCGATGACAATGGCTTCAACTTCAAAGTGTTCTTCGTCGCCGCATCAGGTTTTATGGCCTCTTCTTACACGCTGTTCGCGACCAACGTCATCGCCCCAGCTATAGCCTTCGTATACCCATCCTGCACCTTGAACAATCAGGCCAGCTCGGTGATCGACATTCTCACCCTCGTCGGCTCTATATGCGGCATGCTCATCATGGGCCACCTAGCCGACCGCGGCGGACGCAAGAAACTATACGGCCTTGAGCTTCTTTTCCTCATTGTTTCGACCATGGGTGTGACCCAGGCAAGCAACGGCGTCCTATCGGAAAACAACAAACCTTCTATGGATATATATGGATGGCTGGCATGGTGGCGGATAGCTCTCGGATTTGGGATAGGTGCCGAGGCAACCGTGATCGTGGCCGAGTGGGCATCCACCAAGTCTAGGGGGCTGATGCTTGCCTTGGTCAAGTCCATGCAGTCGCTGGCCCGCCTCCTTGCCGTGGGAATAGGCTTGTGGGCCCTCAAAGCCCTAAGATTAATGGATGACGAATGGGAAACAAACGGAGACAACTCGGTCAATCCAAGCGCAAGCGACCAAGCCAAATGGGTCATTGATATGCTTTGGAGATGTGTTATTGGTGTTGCCATGCTCCCCGCCTTTGTTGCCATCATTGCCCGTGTCACTATTCCCGAAACCCCAAGGTACCATGCAGACATCCGGAAAGACCTCCGACAGGCAGTGAAGAACTCCCTGCGAGTCTACAAGGGTAAAAAGGTGAAGGAGACCAATACACATGCCGCTGAGCCTCCGCTCGACGACGACAGTGACCGGTGGTTCACGGGTGCATGGGACTACCTCAAGAAGGACTCCCATCTTGGCCTGCGGAACCTGTGTCTGATCAGCCTTCTTTGGGGCCTTATGGATGTCGGCTTCTATGGCCTCTCTTTGGATAGCCCCATGGTTCTCTCGATTCTCAGGAACAAATGGGTTGAGAAGGACGGCAGCGACAATTGCACTACGGGGAACGCCTGGCCGTGGAAAGTGCCGACTTGGAGACCGAGATTTGAGCCAGACTGGAACATCTATAAAGTTCTGGAACGCACTTCAGTTGAATCATTGGAGATTGTATCCGTCGCCTCCACGATGGGGAGTATCGCGGCCCTCTTAATGGTCAACTATTTCCGGAGAAAGAGGATTCTCCTCGTCACATTCCTCATGTCGGCTGTCTTGTTCACAACAACAGGGGCCATCTTGATATCGACTTACTGCCTCAAAGATGAGCAGGGCCATTGCCGAGATAACGAGGGTTACCGAAAGGTGGTCATCGTCTTCTATGCCATCACCCAGTTTGTCTACAACGCAGGGCCCAATACCATCATCTTCGTCTTGGCAGCCGAGATCTTTCCTACGGTCTACCGCGGCACATTCTATGGCATCGCCGCAGCTACAGGAAAAGTGGGCGCCATCATCATCCGTGGTATCATCTTGCACTTCGGTGACAGTCACCGAGTTCTGGCCATTCGTCTGCTAGCTTTTGGGCCTTTGATGCTTGTTGCGGCTTTCCTCTCTTGGTACCTTCCAGATGTTCAATATCCTTCGGTTGCTAAGCCGAGGGATGTCGAGGCATCAATGGGATCTCGAGTTGACTCGACACTAAATGACCCAGTTCGGGTAGATGAGGCAGAAGCTGCTTGTCCCCCTCGTGCATCGGAAAGTCTTGAAGATAACATGATGCTGTCAGACATAGATTTGGACTCAGTTTACAGTTCCGAATCTGGTCGAGTCAGTCGCCTTCTCAGTGAGAAGCCTGCCGGATTCTTCAGTCGCTTAGAAAACTTGACTTTGGAGCAAGTTGCCCCAACTCCCCACCGGAAACGCAGGAAGGGCAGGCCTGGGACTGTTCATGAGACACCAGCGAGTCACTCACCAACCGTTGCTTCAGCGACAGGGGCTCTGCCAGTTTCCCCAGGGGTGCTTGGTAACGAGGTGAACAGAAGATAG > 726 NECHADRAFT_77348 NA hypothetical_protein XP_003052419.1 NA MAKLEEHEHHTASDAMVEDAAPPKIADLIPDYGKPWYRVPHLLKLNALLLVPLLTSYVSGFDGSLLNGMQSLPSWNEDFDNPSGSVLGIVSTIQVIGGIAALPFAPMLADRLGRRIGILAGSLIIIAGAGIQGGGSTMGTFLGGRGLVGFGSSFIAVAAAPMIGELAYPSHRPIITAIYNTSWYLGSIVAAWVTYGTFKIPNSWSWRIPCILQAAPSLIQVACIYFVPESPRWLIAHDRPQEAQKILSRYHAGSEEPNELVLAEMNEITVAIQNEKLQNTASYMDFLKTNGNRRRLFICVSIGFIIQWCGNGLVSVYLVQVLKSVGITDPETQNIINGVLQIFNYLVAITSAFFVDRFGRRGMFLFSIAGMTLAFIIWTAISAKNEQQHFQNKGLGIGVVTMIFVFFLFYNIGMNPVPMAYLLEVLPYTLRAKGLTIFNISQFASSVFNGFANPIALEAIGWKYYIVFACLLVVWFIVVYFAYPETRRLSLEEVATLFDGEDAMREMDPKIVSEKQDQL Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003052373 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1560 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315880).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7YKZ5_NECH7.gb Nectria 302917300 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003052373 NA NA pyrenomycetes sac_fungi 19714214 1560 3 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003052373.1 ATGGCCAAACTCGAGGAACACGAACACCACACGGCATCTGATGCCATGGTCGAGGATGCTGCACCTCCCAAGATTGCGGACCTCATTCCCGACTATGGGAAACCTTGGTACAGGGTTCCGCATCTTCTAAAGTTGAATGCCCTCCTCCTCGTTCCTCTTCTGACATCTTATGTCTCTGGATTTGACGGAAGTTTATTGAACGGGATGCAAAGCTTACCCTCCTGGAATGAAGACTTTGACAACCCGTCCGGAAGCGTCCTCGGAATCGTCTCTACCATCCAAGTCATTGGCGGTATCGCTGCTCTGCCATTCGCCCCAATGCTTGCCGATCGACTGGGCCGCCGTATTGGAATATTGGCTGGCTCCCTCATCATCATCGCTGGTGCCGGTATCCAAGGTGGTGGTAGCACCATGGGCACTTTTCTTGGAGGCCGTGGCTTGGTTGGCTTTGGTAGCAGCTTCATCGCTGTTGCAGCTGCCCCAATGATTGGCGAACTTGCATATCCATCCCATCGCCCGATCATCACCGCCATCTACAACACATCATGGTATCTGGGCTCCATCGTCGCTGCGTGGGTTACCTACGGAACCTTCAAGATCCCCAACAGCTGGAGCTGGAGAATTCCTTGCATCCTTCAAGCTGCGCCCTCCCTGATTCAGGTCGCCTGTATCTACTTTGTCCCAGAAAGCCCCAGATGGCTTATTGCGCACGACAGGCCTCAGGAAGCACAGAAAATTCTCAGCAGATATCATGCTGGTTCGGAGGAGCCTAATGAGTTGGTCCTTGCCGAGATGAACGAGATCACTGTCGCAATTCAGAACGAGAAGCTCCAGAATACTGCTTCGTATATGGACTTTCTCAAGACTAATGGAAACCGTCGTCGCCTGTTTATCTGCGTCTCTATCGGTTTCATCATCCAGTGGTGCGGAAACGGTCTCGTCTCTGTCTATCTCGTCCAAGTCCTCAAGTCCGTCGGCATCACCGATCCCGAAACCCAAAACATCATCAACGGCGTCCTTCAAATCTTCAACTATCTCGTCGCCATCACGTCCGCCTTTTTCGTCGATCGCTTCGGCCGTCGTGGCATGTTCCTCTTCTCCATTGCTGGTATGACACTGGCCTTTATCATCTGGACAGCCATTTCGGCCAAGAATGAGCAGCAGCACTTCCAGAACAAAGGCCTGGGCATTGGCGTGGTCACCATGATCTTTGTCTTCTTCCTGTTCTACAACATTGGCATGAACCCTGTCCCCATGGCCTACCTCCTGGAGGTTCTTCCCTATACCCTCCGTGCCAAGGGACTCACTATCTTCAACATCTCTCAATTCGCTAGCTCCGTCTTTAATGGGTTCGCTAACCCGATTGCCCTCGAGGCTATTGGGTGGAAGTACTACATCGTGTTCGCATGTCTGCTTGTCGTCTGGTTCATCGTTGTCTACTTCGCTTACCCCGAGACACGCCGACTGAGCTTGGAAGAGGTTGCGACCCTTTTTGATGGAGAAGACGCTATGCGAGAGATGGATCCAAAGATTGTGTCCGAGAAGCAGGACCAGCTGTAA > 727 NECHADRAFT_80744 NA hypothetical_protein XP_003051356.1 NA MATEKQGGAPDLQIETTDNGLDHLKDVDLHDKTLNTEAHQATAQEHSFSVFQALKTYKRAAFWSILISTTVIMEGYDVTLLSSFYAYPSFRKKYGAWLDEDNGYQISANWQQRFNCLGAFANIIGAMMNGWATAKWGHRKVLMGSLFWLTAFIFVVFFAPNIEVLLVGQFLCNIPWGVFATTGPAYAAEVTPLAIRGYLTAYVNLCWCIGQFISAGVLKGLVNNPTEWSYRVPFAIQWIWPVPLFIAAWMAPESPWYLVRTNQLDEAKRALERLSEPEHDINIDATVAMMVHTNKLEIEERAGVTYWDCFRGSNIRRTEIACVGFLSQITNGGALCYSGSFFFQQTGIGPDASYGIALGGTGIAFVGTIISWFYISKWGRRTIWLTGFSSLVVILWVIGFLALAKQTMALAWAQSILCIVWLGAYSMSVGPIIYTLVAEIGSTRLRTQTVVLARSTYYVGNIVCGGLLQPQLLSPGAWNAKGKTAFFWAGLATLTLIWGYFRMFETKDRTFGEMDYMFQKGVPARKSANYKINEDEVFLAEAQASREQK Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003051310 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1650 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315878).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_predicted_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7YSI1_NECH7.gb Nectria 302915089 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003051310 NA NA pyrenomycetes sac_fungi 19714214 1650 5 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003051310.1 ATGGCGACTGAAAAGCAAGGCGGAGCTCCAGATCTCCAGATCGAGACCACTGACAATGGCCTCGACCATCTCAAGGACGTCGACCTGCATGACAAGACGCTCAACACCGAGGCTCACCAGGCCACGGCCCAGGAGCATAGCTTCAGTGTCTTTCAGGCTCTCAAGACGTACAAGCGGGCTGCCTTTTGGTCCATCCTCATCTCGACCACCGTCATCATGGAGGGTTACGACGTTACCCTCCTGAGCTCGTTCTACGCTTACCCGAGTTTCCGCAAGAAGTACGGTGCCTGGCTGGATGAGGACAACGGATACCAGATCTCGGCAAACTGGCAGCAGAGGTTCAACTGTCTCGGTGCCTTTGCCAACATCATCGGCGCCATGATGAACGGATGGGCGACTGCCAAATGGGGTCACCGCAAGGTCCTCATGGGTAGCCTGTTTTGGCTGACTGCTTTCATCTTTGTCGTCTTCTTTGCGCCCAACATCGAGGTTCTCCTGGTCGGTCAGTTCCTTTGCAACATTCCCTGGGGTGTCTTTGCCACCACTGGCCCTGCGTATGCTGCCGAGGTCACTCCTCTGGCTATCCGTGGTTATCTCACTGCCTATGTCAACCTGTGCTGGTGCATCGGCCAGTTCATCTCAGCCGGCGTCCTCAAGGGTCTCGTCAACAACCCTACCGAGTGGAGTTACAGAGTTCCCTTTGCCATCCAGTGGATCTGGCCCGTCCCTCTGTTCATCGCCGCCTGGATGGCCCCCGAGTCTCCGTGGTATCTCGTCCGGACGAACCAGCTCGACGAGGCCAAGCGAGCCCTCGAGCGTCTTTCCGAGCCGGAGCACGACATTAATATCGATGCCACCGTCGCCATGATGGTGCACACCAACAAGCTCGAGATTGAGGAGCGGGCTGGTGTCACGTACTGGGATTGCTTCCGCGGTAGCAACATTCGACGTACCGAGATCGCATGCGTGGGCTTCCTCTCCCAGATCACCAATGGCGGCGCTCTTTGCTACAGTGGATCTTTCTTCTTCCAGCAGACCGGTATTGGACCTGATGCTTCATACGGAATCGCCCTCGGTGGCACTGGTATCGCCTTTGTCGGAACCATCATCTCTTGGTTCTACATCTCCAAATGGGGACGCCGCACAATCTGGCTCACTGGCTTCTCCTCCCTCGTCGTCATCCTCTGGGTCATTGGTTTCCTAGCCCTGGCCAAGCAGACCATGGCTCTCGCCTGGGCGCAGTCCATACTCTGTATCGTCTGGCTCGGCGCTTACTCTATGTCGGTCGGCCCCATCATCTACACCTTGGTCGCCGAGATTGGCTCAACCCGTCTACGAACCCAGACCGTCGTCCTGGCCCGATCAACCTATTACGTCGGCAACATTGTCTGCGGAGGACTTCTCCAGCCGCAGCTGCTCTCCCCCGGGGCGTGGAATGCAAAGGGAAAGACTGCCTTTTTCTGGGCCGGCCTCGCTACTCTTACGCTCATCTGGGGCTACTTCCGCATGTTTGAGACCAAGGACCGAACCTTTGGTGAGATGGACTACATGTTCCAGAAGGGCGTCCCGGCTCGCAAGTCTGCCAATTACAAGATCAACGAGGATGAGGTGTTCCTTGCTGAAGCTCAGGCCAGCAGGGAGCAAAAGTGA > 728 NECHADRAFT_48911 NA hypothetical_protein XP_003050614.1 NA AFFACFFVWPFTARYGRRWSIVLASCVFNIGAILQLFYPNNSVATWYAGRVISGLGVGIATVIIPMFSAEMAPKAIRGQLGSMFQFFFTLGVFTSYWIDYAVAEHMPSTTAQWRVPVGLQLVPGGILGMGMLLTKESCRWLAKVGRHEDALESLVWVRGGELTPEVQSEMDEILAAIAEEERITEGLTWKEYLLPANRWRMFIVITLQIGVQLTGNTSLAYFSPQIFNAVGAGSNAFLFSGFFGLVKVVACLFFLLFLVERIGRRGSLILGAFMMGVYMLIVAVITATHPPVAGGGMTSASVASLTMIYLEAMTYNISWGPVPWLYMSEIFPTRIREGGIAVGTATQWLWNFAFSQITPHAVENLGWKTFLMFCIFNFALVVYAWFIIKETKGRSLEEMELSKFDIFTK Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003050568 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA <0:1230 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315877).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7YV08_NECH7.gb Nectria 302911984 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003050568 NA NA pyrenomycetes sac_fungi 19714214 1230 9 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003050568.1 GCCTTTTTCGCGTGCTTCTTCGTCTGGCCCTTTACTGCACGATACGGTCGACGATGGTCCATTGTTCTAGCCTCGTGCGTCTTCAACATTGGCGCGATCCTTCAGCTCTTCTACCCAAACAACTCGGTCGCGACTTGGTACGCCGGACGCGTCATCTCGGGCCTCGGCGTGGGCATCGCGACAGTCATCATCCCCATGTTCAGCGCCGAGATGGCACCCAAGGCTATCCGTGGCCAGCTGGGCAGCATGTTTCAGTTTTTCTTCACGCTTGGAGTGTTTACTAGCTACTGGATCGACTATGCCGTTGCCGAGCACATGCCTTCTACTACAGCGCAGTGGAGAGTTCCTGTTGGACTGCAGCTTGTTCCTGGTGGTATTCTCGGCATGGGCATGCTGCTTACAAAGGAGAGTTGTCGTTGGTTGGCCAAGGTTGGGAGGCACGAGGACGCCTTGGAGTCGTTGGTGTGGGTTCGTGGTGGTGAATTGACCCCTGAAGTTCAGTCAGAGATGGATGAGATTCTGGCTGCTATTGCCGAGGAAGAGCGCATCACCGAAGGTCTTACATGGAAGGAATATCTTCTCCCTGCCAACCGCTGGCGCATGTTTATCGTCATCACTCTGCAGATTGGTGTCCAACTTACCGGCAACACATCCCTCGCCTACTTCTCCCCTCAAATCTTCAACGCCGTCGGAGCTGGTTCAAACGCCTTCCTCTTCAGCGGTTTCTTCGGCCTCGTCAAGGTCGTAGCCTGCTTGTTCTTCCTGCTCTTCCTCGTTGAGCGTATTGGCCGAAGAGGCTCTCTTATCCTTGGTGCCTTTATGATGGGTGTTTACATGTTGATCGTTGCGGTCATCACTGCTACTCATCCACCGGTTGCAGGAGGTGGCATGACATCTGCTTCTGTTGCTTCTTTGACCATGATTTACCTCGAAGCCATGACGTATAACATCTCTTGGGGTCCAGTTCCTTGGCTCTACATGTCCGAGATCTTCCCCACACGCATCCGAGAAGGAGGCATCGCAGTGGGAACAGCAACGCAGTGGCTTTGGAACTTTGCTTTCAGCCAAATCACTCCCCATGCTGTTGAGAACCTCGGCTGGAAGACGTTCCTGATGTTTTGCATCTTCAACTTTGCTCTCGTCGTCTACGCTTGGTTCATCATCAAGGAGACCAAGGGCCGATCTCTGGAGGAGATGGAGCTTAGTAAGTTTGACATTTTTACTAAATAA > 729 NECHADRAFT_45343 NA hypothetical_protein XP_003049304.1 NA MGGPGRVSVSSNDIPDHVRRTLQRERQVTFWGCCRQYPKAVAWSLMLFCTIIMEAFDKSLIQGFIAFPPFRRRYGTPITNIDDPTVTQDYEISPTWQMGLQNAAIACEIVGLLAHGYITYLIGYRKMLVLCMIWLMIAIFASFFANSIAMLAVGQALCGFPWGVIQTLAATYAAEVVPSTLRAILLSNVNMCWLIGQFAAMGVLRIFVDDETEWSYRLPFAIQWAIAVPLIIGVCFCPNSPWWLIRHERPDEARKALKRLTNGHNLNIEDTIVVMEHTNQLENKYNYGGASYRDCFKGANRRRTEIACAVWACQALCGSTLTSYGAYFLTQAGFNAAHSFTLSTGMYGMGILGGMISWIFLSFVGRRKLYLTGLSCALGFLTVGGISSVALASTGVTNWILGGIIIAMTFTYNITIGPVCYVLVAEIPSTRLRVKTVALARVTYNIFMMLNNVVVPQMLSPTAWNLKGRVCFVYIGTTILCLIWAYLRLPECKSLSYLELDILFEKRAPTKKFKEFQDRLQGTAYMSASRIERSKNPWHGWMAYS Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003049258 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1638 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315875).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7YXH4_NECH7.gb Nectria 302905613 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003049258 NA NA pyrenomycetes sac_fungi 19714214 1638 7 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003049258.1 ATGGGAGGCCCGGGTCGAGTCTCTGTTAGCTCCAACGACATCCCAGACCACGTCCGCAGGACGCTGCAGAGAGAACGCCAGGTTACATTCTGGGGATGCTGTCGTCAGTATCCCAAGGCTGTAGCGTGGTCTCTGATGTTGTTCTGCACCATCATCATGGAGGCCTTTGACAAGTCGCTGATACAAGGCTTCATTGCGTTTCCACCCTTTCGCAGGAGGTATGGGACCCCAATAACAAACATTGACGATCCAACCGTCACGCAGGACTACGAGATTTCGCCAACATGGCAGATGGGGCTGCAGAATGCCGCCATTGCTTGCGAAATCGTTGGTCTCCTTGCCCATGGTTACATCACTTATCTTATTGGGTATCGGAAGATGTTGGTCCTTTGCATGATTTGGCTCATGATTGCTATCTTTGCCTCCTTCTTTGCCAATAGCATCGCCATGCTTGCAGTTGGACAGGCACTTTGTGGCTTCCCTTGGGGCGTTATTCAGACCCTCGCCGCCACCTACGCCGCCGAGGTCGTCCCATCAACATTGAGGGCCATTTTGCTCAGCAATGTCAACATGTGCTGGTTGATTGGGCAGTTTGCAGCAATGGGCGTTCTTCGCATCTTTGTCGACGATGAAACTGAGTGGTCTTATCGATTGCCATTCGCGATTCAATGGGCCATCGCCGTGCCTCTGATCATTGGCGTGTGCTTTTGCCCCAACAGTCCATGGTGGCTTATTCGTCACGAACGACCGGACGAAGCTCGCAAGGCTTTGAAACGACTTACCAACGGCCACAATCTTAACATCGAAGACACCATCGTCGTCATGGAGCACACGAACCAGCTCGAAAACAAGTACAATTACGGAGGCGCGAGCTACAGAGATTGCTTCAAGGGTGCGAACCGTCGCAGGACTGAGATTGCCTGTGCTGTCTGGGCGTGTCAGGCCCTCTGCGGTTCTACCTTAACCTCGTACGGGGCCTACTTTCTTACCCAGGCTGGGTTTAATGCCGCACACTCATTTACACTGTCGACTGGCATGTACGGCATGGGCATCTTGGGAGGCATGATCTCTTGGATCTTTCTCTCATTCGTCGGCAGACGCAAGCTTTATCTGACTGGATTGTCATGTGCCCTTGGCTTTTTGACCGTCGGTGGAATTTCGTCAGTTGCCCTGGCATCGACTGGTGTAACCAACTGGATCTTGGGTGGCATCATCATTGCCATGACTTTCACTTACAACATCACAATCGGTCCTGTCTGCTATGTACTTGTTGCCGAAATCCCCTCAACAAGACTCCGCGTCAAAACAGTTGCACTTGCAAGAGTCACATACAACATCTTCATGATGCTCAACAACGTCGTGGTCCCACAAATGCTGAGCCCAACGGCATGGAACCTCAAGGGCAGGGTGTGTTTCGTGTACATTGGCACCACCATCCTGTGCCTAATATGGGCTTACCTGAGACTACCCGAGTGCAAGTCACTGTCATATCTCGAGCTGGACATCTTATTCGAGAAGAGGGCGCCTACGAAAAAGTTCAAGGAGTTTCAGGATCGTCTGCAGGGTACGGCTTACATGAGCGCTTCAAGGATCGAGAGGTCTAAAAACCCTTGGCATGGATGGATGGCTTACTCATGA > 730 NECHADRAFT_95845 NA hypothetical_protein XP_003048592.1 NA MALTDDKVTRVSQDDHPHDYHDTKDLAIAKQAAEEEHRLTFVEAIRRYPMAVMWSVLLSTSIIMEGYDIVLISSFFAQPSFREHYGEYISESNTYQITASWQNGLSNAVSVGTIIGAFANGFFTHKFGYRKVLLASLVAICGCVFISFFSPNLPVLLVGQFLCGIPWGVFATMAPAYASEVCPMVLRGYLTVYVNLCWALGQLVSAGVQAGFSDRQGQWSYRVPFAIQWAWPVPLFIVLWFAPESPWYFVRTGNYDEAEKSVTRLGSTSKGVNAKQTVAMMIHTNEIEKSIDQGTSYIDCFRGVDLHRTEIACMAFAAQPFCGSAMGGTPTYFFVQAGLPESISFRMSVGGLGIASVGTVISWWLIHPFGCRTLYLWGLGLLTAILLAVGFISVGASNSEGGNYAQASMMLLWLGVYYLTVGPVCYAIISEVSSTRLRNKSICLSRIVYYVAQIICNVINPYMLNPTAGNWRGKTGFFWAGCAFVFFVWTFFRLPETKDKTFEELDILFAHGVKAREFAQYRVDAYAESGDVLTKEG Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003048546 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1614 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315873).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_predicted_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7YZZ2_NECH7.gb Nectria 302902148 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003048546 NA NA pyrenomycetes sac_fungi 19714214 1614 8 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003048546.1 ATGGCTCTCACCGACGACAAGGTGACCAGGGTCAGCCAAGATGATCACCCTCACGACTATCACGACACCAAGGACCTGGCCATCGCCAAGCAGGCAGCCGAGGAAGAGCATCGACTCACCTTTGTCGAAGCTATCCGGCGATACCCTATGGCCGTCATGTGGTCCGTCCTACTGTCGACCTCCATCATCATGGAAGGATACGACATCGTCCTGATCTCCTCCTTCTTCGCCCAGCCCTCCTTCAGAGAGCACTACGGAGAGTACATTTCCGAGTCCAACACGTATCAGATCACCGCCTCCTGGCAAAACGGCCTCAGCAATGCCGTCAGCGTGGGGACCATCATTGGCGCCTTTGCCAACGGTTTCTTCACCCACAAGTTTGGTTACCGCAAGGTCCTCCTCGCCTCGCTCGTCGCTATCTGCGGTTGCGTCTTCATCTCCTTCTTTTCTCCCAACCTCCCCGTTCTATTGGTCGGACAATTCCTCTGCGGCATTCCCTGGGGAGTTTTTGCCACCATGGCCCCGGCCTACGCATCCGAGGTCTGCCCCATGGTCCTACGTGGCTATCTCACTGTCTATGTGAACCTCTGCTGGGCCCTTGGTCAGCTCGTATCCGCCGGGGTGCAGGCTGGGTTCTCTGATAGGCAAGGCCAATGGTCTTACCGTGTTCCGTTCGCTATCCAGTGGGCTTGGCCAGTTCCCCTTTTCATCGTGCTCTGGTTCGCCCCTGAATCTCCTTGGTACTTTGTCCGCACTGGAAACTATGACGAAGCCGAAAAGTCTGTCACTCGCCTTGGCTCTACGTCCAAAGGCGTCAACGCCAAGCAAACCGTCGCCATGATGATTCACACCAACGAGATTGAGAAGTCTATCGACCAAGGCACTTCGTATATCGATTGCTTCCGCGGGGTCGACCTCCACCGAACTGAGATCGCCTGCATGGCATTTGCCGCTCAGCCCTTTTGCGGTTCGGCCATGGGCGGCACTCCTACATACTTCTTCGTTCAAGCCGGCCTTCCCGAGTCAATCTCTTTCCGCATGTCCGTGGGTGGACTCGGAATTGCTTCTGTTGGCACCGTTATCTCCTGGTGGTTGATTCACCCCTTTGGCTGCCGGACCCTGTACCTCTGGGGTCTCGGTCTCCTAACTGCCATTCTTCTAGCCGTCGGCTTCATTAGCGTCGGGGCTAGTAACTCGGAAGGTGGTAACTACGCGCAGGCCAGCATGATGCTTCTGTGGCTTGGCGTTTACTACTTAACTGTCGGTCCTGTCTGCTACGCCATCATCTCTGAAGTTTCCTCGACCCGCCTCCGGAACAAGAGCATTTGCCTCAGCCGTATTGTCTATTATGTGGCTCAGATCATTTGCAACGTCATCAACCCGTACATGCTGAACCCCACCGCCGGTAACTGGCGTGGCAAAACTGGTTTCTTCTGGGCGGGGTGTGCCTTTGTCTTCTTTGTATGGACCTTTTTCCGTCTTCCAGAGACTAAGGATAAGACCTTCGAAGAACTTGATATTTTGTTTGCTCACGGCGTCAAGGCTCGTGAATTCGCCCAGTACCGCGTCGACGCCTACGCTGAAAGCGGCGATGTTTTGACCAAGGAGGGCTGA > 731 NECHADRAFT_95904 NA hypothetical_protein XP_003048645.1 NA MLGQISIKINGADCGAEALLLALITSIGGFLFGYDTGQISGMLLFEDFTNRFAQKHDDGTIAWVSIIKSLLVSLMSIGCLIGALLGSYTADWYGRRKSLSIAVVVFLIGNTLQITAMHSWVHMTIGRLVAGFGVGALSIGVPMFQSECSPREIRGAVVASYQLMISLGILVSNLVNYGVREIQETDASWRVIIGIEMAFSLPLGLGILVAPESPRWLAMRDDWEGSRLSLARLRGMKDDPKNPLVEDNLSEMRMLLEEERRAGQGTWLECVDPRNETPKVVYRTLLGMAVQFLQQWTGVNYFFYYGATIFQSAGIDDPILVQLILGAVNVGMTIPGIYITERVGRRWPLFLGALWQTAWLIVFASVGTAINPEGNSAVGKAMIVSACMFIASFALSWGPLGWVVVGELFPLRTRAKQASLATASNWLGNFLISFLTPFADDGISYSFGYVFAGMNFIAAIITWCFLYESKTLSLEHIDLMYSLPDLKAWNSSNWTPPGYISRKERDEAYFREMGNTKEPEKEVIHSDSITE Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003048599 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1596 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315873).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7Z0A4_NECH7.gb Nectria 302902397 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003048599 NA NA pyrenomycetes sac_fungi 19714214 1596 8 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003048599.1 ATGCTCGGACAAATTTCCATCAAGATCAATGGGGCCGATTGTGGAGCCGAGGCTCTGCTCTTGGCCTTGATCACCTCCATCGGAGGCTTTCTCTTTGGCTATGATACTGGTCAGATCTCAGGAATGCTCCTGTTTGAGGATTTCACCAACCGGTTTGCCCAGAAGCACGATGATGGTACCATCGCTTGGGTGTCCATCATCAAGTCGCTTCTGGTCTCGCTCATGAGTATTGGTTGTCTGATTGGTGCCTTGTTGGGTTCATATACAGCCGACTGGTATGGTCGGAGAAAGAGCTTGAGCATTGCCGTTGTTGTCTTCCTTATCGGCAACACGCTTCAAATCACGGCAATGCATTCCTGGGTGCATATGACCATCGGTCGACTGGTTGCTGGTTTCGGCGTTGGCGCCCTGTCCATCGGCGTGCCAATGTTCCAGAGCGAGTGTTCTCCACGAGAGATCCGTGGTGCTGTGGTTGCATCTTACCAGCTCATGATTAGTCTGGGCATCCTTGTTTCCAACCTTGTCAACTATGGAGTCCGCGAGATCCAGGAAACAGATGCTTCTTGGCGTGTGATCATCGGCATTGAGATGGCTTTCTCTCTTCCTCTCGGTCTTGGCATTCTCGTGGCTCCAGAGTCACCTAGATGGCTGGCCATGAGAGATGACTGGGAAGGGTCACGACTTTCTCTCGCACGACTTCGCGGCATGAAGGACGATCCCAAGAACCCATTGGTCGAGGATAATCTCAGCGAGATGAGAATGCTCCTGGAAGAGGAACGCAGAGCTGGTCAAGGTACCTGGCTGGAGTGTGTCGACCCACGCAACGAGACCCCCAAGGTTGTGTACCGAACCCTCCTTGGCATGGCCGTTCAGTTCCTCCAACAGTGGACTGGCGTCAACTACTTCTTCTACTACGGAGCCACCATTTTCCAATCTGCCGGTATTGATGATCCAATCCTGGTTCAACTGATCCTGGGCGCTGTCAACGTCGGCATGACCATTCCCGGTATCTACATTACGGAACGGGTGGGTCGTAGATGGCCACTCTTCTTGGGTGCTCTGTGGCAGACAGCCTGGCTTATCGTTTTCGCCTCTGTCGGTACAGCGATCAATCCAGAGGGAAACAGCGCTGTTGGAAAGGCCATGATTGTTTCGGCCTGCATGTTTATTGCATCCTTCGCCCTCAGCTGGGGCCCCTTGGGTTGGGTTGTCGTTGGAGAACTGTTCCCTCTCCGAACTCGTGCCAAGCAAGCGTCTCTTGCGACCGCCAGTAACTGGCTCGGAAACTTCCTCATCAGTTTCCTCACCCCCTTCGCTGACGACGGCATCTCTTACTCCTTCGGATACGTCTTTGCTGGAATGAACTTCATCGCTGCCATCATCACCTGGTGCTTCCTCTACGAGTCCAAGACTCTGAGTCTCGAACACATCGACCTGATGTACAGCCTTCCAGACTTGAAGGCTTGGAACAGCTCAAACTGGACGCCACCAGGTTACATCAGCCGTAAGGAGCGCGACGAGGCTTACTTCCGCGAAATGGGCAACACCAAGGAGCCCGAGAAGGAGGTTATCCACAGCGACAGTATTACCGAATAG > 732 NECHADRAFT_69126 NA hypothetical_protein XP_003048040.1 NA MADNQDQVSPAPADAPPSKTPADTSAAIDSAVDDSAALDSSDPSKTHRNIIEHARAAAHKERNMTLRQGIKLYPKAIFWSILISTCIAMEGYDISLVNNFYAFPQFNKKYGVLGDDGTYQVPAAWQAGLSNGANCGEIIGLFINGWVSERLGYRYTVCVCLICVTGFTAIFFTAQNVQTLLVAEILCGIPWGIFQTLTITYASEVCPVALRGYLTTYVNFCWGLGQEIGIGVIRSMLNRTDEWAYRIPYALQWMWPLPLCVGIFFAPESPWWLVRKGRSQEAKQALLRLTSLDRETDFDADETIAMMVHTTALEEKMTAGASYWDCFRGVDLRRTEIVCMTWAIQNLSGNSFSNYSTYFLEQAGLSADKAYSFALGQYAINMVGVLGAWALMTLGIGRRTLYLYGLCGLCSMLFVMGFLGLVPDAHRDQASLATGSMMIVWALFYQLSVGTVCYSLVGELSSRRLQIKTVVLGRNAYNIIGIINSVLTPYMLNPTAWDWGNYAGFFWGGICFLCIIYTYFRLPEPNGRTFAELDVLFERGISARKFATTEVDVFHETVEENVMNRYEELADSPSDRADEKA Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003047994 1..1746 Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1746 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315872).COMPLETENESS:_incomplete_on_the_5_end. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_predicted_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7Z198_NECH7.gb Nectria 302899385 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003047994 NA NA pyrenomycetes sac_fungi 19714214 1746 5 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003047994.1 ATGGCCGACAACCAAGACCAGGTGTCGCCAGCCCCGGCTGACGCCCCGCCGTCAAAGACACCTGCCGATACTTCGGCCGCTATTGACTCGGCCGTTGACGACTCGGCCGCGCTTGACAGCTCCGATCCCAGCAAGACGCACCGTAACATCATCGAGCATGCCCGTGCCGCCGCTCACAAGGAGCGCAACATGACCCTTCGTCAGGGCATCAAGCTTTACCCCAAGGCCATCTTCTGGAGTATCCTTATCTCCACTTGTATCGCAATGGAGGGTTATGACATTAGTCTTGTCAACAATTTTTACGCTTTCCCCCAGTTCAACAAAAAGTATGGTGTTCTTGGCGACGACGGCACTTACCAGGTTCCCGCCGCGTGGCAAGCCGGTCTGAGCAATGGTGCCAACTGTGGTGAAATTATCGGTCTCTTCATCAACGGCTGGGTTTCGGAGCGCCTTGGGTATAGATACACCGTGTGTGTCTGCCTGATCTGTGTCACCGGCTTCACGGCCATCTTCTTTACCGCCCAGAACGTCCAGACTCTGCTCGTTGCTGAGATTCTGTGCGGTATCCCGTGGGGTATCTTTCAGACTCTCACCATCACCTATGCGTCCGAGGTCTGCCCTGTGGCTCTCCGTGGCTACTTGACCACCTATGTCAACTTCTGCTGGGGTCTCGGTCAGGAGATTGGTATTGGCGTTATCCGCTCCATGCTCAACCGTACCGACGAGTGGGCTTATCGTATCCCCTATGCCCTGCAGTGGATGTGGCCGTTGCCCCTCTGCGTGGGTATCTTCTTTGCGCCTGAATCGCCCTGGTGGCTCGTCCGAAAGGGTCGTAGCCAGGAGGCCAAGCAGGCCTTGCTGCGTCTAACCAGCCTTGACCGCGAAACTGACTTTGACGCCGACGAGACCATTGCCATGATGGTGCACACCACTGCCCTCGAGGAGAAGATGACTGCTGGTGCCTCATACTGGGACTGTTTCAGAGGGGTCGATCTTCGCCGAACCGAGATCGTTTGCATGACCTGGGCGATACAGAACTTGAGCGGCAACTCTTTCTCCAACTATTCCACTTACTTCCTCGAGCAGGCCGGTCTCTCAGCCGACAAGGCATATTCGTTCGCCCTCGGCCAGTATGCCATCAATATGGTTGGCGTGCTGGGTGCTTGGGCTTTGATGACGCTCGGTATTGGTCGACGAACCCTATATCTTTACGGTCTCTGTGGTCTCTGCTCCATGCTTTTCGTCATGGGATTCCTCGGCCTGGTACCTGATGCCCACCGAGACCAGGCATCGTTGGCCACTGGCAGCATGATGATCGTGTGGGCACTCTTTTACCAGCTCAGTGTGGGCACCGTGTGCTACTCCCTCGTTGGCGAGCTATCGTCCCGTCGTCTTCAGATCAAGACTGTTGTGTTGGGTCGTAACGCTTACAATATCATTGGCATCATCAACAGCGTCTTGACGCCGTATATGCTCAACCCTACCGCTTGGGACTGGGGCAACTATGCCGGATTCTTCTGGGGCGGCATCTGCTTCTTGTGCATCATCTATACCTACTTCCGCCTGCCAGAGCCGAACGGCCGAACCTTTGCGGAACTCGATGTGCTTTTTGAGCGAGGCATCAGTGCCAGGAAGTTTGCCACAACTGAAGTGGACGTGTTCCATGAGACGGTAGAAGAAAACGTCATGAACCGCTACGAAGAGCTGGCCGATTCACCATCAGACAGGGCTGATGAGAAGGCCTAA > 733 NECHADRAFT_50780 NA hypothetical_protein XP_003047588.1 NA MGIFTKFRLFNRRLALACMLIAVSTFNYGFDNQAFASTQAMDPFEKQFGHWDEKKGAYALEPYWLSLFNSLNYIGFAFGVIAGSFISARWGRRWCMFSMSVYALGTATISVTSFHREQIMAARILNYVYVGMELGVVPTFQSEIVPAQARGFMVGSYQLSLALGGLVINSVCYGTSFLSDNRAWRIPLGLFYIVPSIVVAGIWFIPESPRWLLRKDRVEEAWQNLRKLREGAFTEEQIEAEFKELRTSLEQEIEQGRFVELLQGNNLKRTAIVIAVNFLQQASGQAFVSQYGAVYVKMLGTINPFGFNLITAGINIVTLTCILLWTDIVGRRILMIASSCTMFAAMTTMGGLGIESPVADDRKKGVLAMMALFACGFSMGWAPLSYVVTTEISALRLRDLTSRVGFTTNVIMNFTVNFTIPYLIYDQYAGLNSKVGFIFGGLMAVAIVFVYFCVPECKGKTLEQVDFLFNQGVPIRDFGKTDAAAMMQSVLEDENGKRHDSDVERGSVVVGSKHDN Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003047542 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1551 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315871).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7Z1S6_NECH7.gb Nectria 302897418 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003047542 NA NA pyrenomycetes sac_fungi 19714214 1551 10 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003047542.1 ATGGGAATCTTTACCAAGTTCCGCCTCTTTAACAGGAGGCTCGCTCTCGCTTGTATGCTCATTGCCGTGTCGACCTTCAACTATGGCTTTGACAACCAGGCTTTTGCGAGTACCCAGGCCATGGACCCGTTTGAGAAGCAGTTTGGCCATTGGGATGAGAAAAAGGGGGCATACGCTCTTGAGCCATACTGGCTCTCGCTGTTCAACAGTCTCAATTACATTGGCTTTGCCTTTGGAGTCATTGCCGGTAGCTTCATTTCGGCTCGCTGGGGTCGAAGGTGGTGTATGTTTAGCATGAGTGTTTATGCTCTTGGTACGGCTACCATTTCGGTCACGTCGTTCCACCGTGAACAGATCATGGCGGCTCGTATTCTCAACTATGTCTATGTCGGCATGGAGCTTGGCGTCGTTCCAACCTTCCAGTCTGAAATTGTCCCCGCTCAAGCTCGAGGCTTCATGGTCGGCTCATACCAGCTCAGTCTCGCGCTTGGTGGCCTCGTCATCAACAGCGTCTGTTACGGCACCAGCTTCCTCTCCGATAACCGCGCATGGAGAATTCCCCTCGGTCTGTTCTACATTGTCCCTAGCATTGTTGTGGCGGGTATCTGGTTCATCCCCGAATCGCCCCGGTGGCTTCTCCGCAAGGACCGCGTTGAGGAGGCGTGGCAGAATCTCCGCAAGCTCCGAGAAGGAGCATTCACTGAAGAGCAGATTGAAGCCGAGTTCAAGGAGCTTCGTACTTCACTTGAGCAAGAGATCGAGCAGGGTCGTTTCGTTGAGCTGCTTCAGGGCAACAACCTCAAGCGAACGGCGATAGTTATCGCTGTCAACTTTCTGCAGCAAGCCAGTGGCCAAGCCTTCGTATCACAGTACGGTGCTGTGTATGTCAAGATGCTTGGGACCATTAACCCGTTCGGCTTCAACTTGATCACGGCAGGCATCAACATTGTTACATTGACCTGCATTCTCCTCTGGACGGATATTGTTGGTAGACGGATCCTGATGATTGCGTCTTCCTGCACAATGTTTGCAGCAATGACCACCATGGGAGGTTTGGGTATTGAGAGCCCCGTTGCCGACGATAGAAAGAAGGGTGTCTTGGCCATGATGGCCCTATTTGCCTGCGGATTCTCAATGGGCTGGGCGCCGCTGAGCTACGTCGTCACAACCGAGATCTCGGCTCTTCGACTTCGCGACTTGACCTCGCGAGTTGGATTCACTACCAATGTCATCATGAACTTCACCGTCAATTTCACCATCCCGTACCTCATCTACGACCAGTATGCTGGCCTTAATAGCAAGGTTGGCTTCATCTTTGGCGGACTCATGGCGGTCGCTATCGTCTTTGTGTACTTCTGTGTGCCTGAGTGCAAGGGTAAGACGCTGGAGCAGGTCGACTTTTTGTTTAACCAAGGAGTTCCGATCCGTGACTTTGGCAAGACGGATGCTGCGGCTATGATGCAATCGGTCTTGGAGGATGAAAACGGTAAGAGGCACGACTCTGATGTCGAGAGGGGCTCTGTTGTGGTGGGGTCCAAGCATGATAACTGA > 734 NECHADRAFT_76534 NA hypothetical_protein XP_003046066.1 NA MAVKEPGNHGANDSLSPAQRLKHFNGMLVFIMIYLAFCAFNFGFDVGTFGGVQAMHSFTSMFGECDDKNVCALPGWLSSVMTATPFLGKAAGCIACGWIAEKWGRRAAILGICLVSFVGVALQTSATTAAQFTIGRIITFGMTGMAIVVIPIYSAEVSPKVLRGMFASTIQVMIIFGQVISTLVTYGTKSMQSAAGWRIPIGLQLLVPAIIFCLLPFLPESPRWLLSNNRRDLAVVSMKKLRKSATDEDIQTEIEALAYAHAHEEKGTWGEVFDKSNRVRTGVAVLAMFGQQITGQAFPSQYGVIFYQSQGYGDRSFLFNVISNIIGMFGVILTWFYIDTTGRRPVIMVGGFLMGVFLMILGGVGSIDAKIINHHEKELMVSSLMLFQFFYSLSWAPCSYVVLSETAALRLKEKTNLFASVISVLTTFVTSFTMPYLINAKYANLGGKVGFIYGAINFVMVVATFFFIPELKSRTLEEVDQLFASGAPLRNFSEISTKSATEMYEEEVKQGTAEVNERVDKVEVA Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003046020 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1578 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315867).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7Z4I5_NECH7.gb Nectria 302894370 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003046020 NA NA pyrenomycetes sac_fungi 19714214 1578 2 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003046020.1 ATGGCAGTAAAGGAGCCCGGCAACCATGGGGCGAACGATAGCCTGTCGCCAGCTCAGCGACTGAAGCACTTTAACGGGATGCTTGTTTTCATCATGATATACCTGGCGTTTTGCGCCTTCAACTTTGGCTTCGATGTCGGAACCTTTGGCGGTGTCCAGGCAATGCACAGCTTCACCAGCATGTTTGGCGAGTGCGACGACAAGAACGTTTGCGCTCTGCCTGGATGGCTGTCTTCAGTCATGACAGCTACGCCTTTTCTTGGAAAAGCAGCGGGTTGCATCGCCTGTGGTTGGATTGCTGAGAAATGGGGTCGTCGAGCCGCTATTCTCGGCATCTGTCTTGTCTCTTTTGTAGGAGTTGCTCTTCAGACGAGCGCCACAACAGCAGCCCAGTTCACCATTGGCCGAATCATCACATTCGGCATGACAGGCATGGCCATCGTTGTGATTCCAATCTACTCAGCCGAAGTCTCCCCCAAGGTTCTTCGCGGAATGTTTGCTTCGACAATCCAGGTCATGATCATCTTTGGTCAGGTCATCTCAACGCTTGTCACCTACGGTACCAAGAGTATGCAGAGCGCCGCAGGGTGGCGTATCCCCATCGGTCTTCAACTACTAGTGCCCGCCATCATCTTCTGCCTCTTGCCCTTCTTACCTGAGTCACCTCGCTGGCTACTCAGCAATAACAGAAGAGATTTGGCCGTGGTGAGCATGAAGAAGCTGAGAAAGTCCGCCACCGATGAGGATATCCAAACTGAGATTGAGGCGTTGGCTTATGCTCACGCTCATGAAGAAAAGGGCACTTGGGGAGAGGTATTTGATAAGAGCAACCGCGTACGGACTGGGGTTGCCGTTCTAGCCATGTTTGGCCAACAGATCACAGGCCAAGCGTTCCCATCCCAGTACGGTGTCATCTTCTATCAGTCCCAAGGTTACGGTGATCGTTCATTTCTGTTTAATGTCATTTCCAACATCATTGGCATGTTTGGTGTCATTCTCACCTGGTTCTACATCGATACCACTGGGCGCCGCCCGGTCATCATGGTCGGTGGTTTCCTGATGGGAGTGTTCCTCATGATCCTGGGAGGTGTGGGATCCATCGACGCCAAGATCATCAACCACCACGAAAAGGAACTCATGGTGTCTTCACTTATGCTCTTTCAGTTCTTTTACAGTCTGTCTTGGGCCCCATGTTCATATGTTGTCCTCTCAGAAACGGCCGCGCTTCGCCTCAAGGAAAAAACCAACTTATTTGCAAGCGTTATCTCTGTTCTGACAACATTCGTCACCTCATTCACTATGCCGTATCTCATCAACGCCAAATATGCAAACCTTGGCGGAAAGGTCGGCTTCATTTACGGAGCCATCAACTTTGTCATGGTGGTGGCAACTTTCTTCTTCATCCCTGAGCTCAAGAGCAGGACCTTGGAGGAGGTGGATCAGCTCTTTGCCAGCGGAGCACCATTGAGAAATTTCAGTGAGATCAGCACCAAGTCTGCCACAGAGATGTATGAAGAGGAAGTTAAGCAGGGCACTGCTGAGGTGAACGAGAGGGTTGACAAGGTGGAGGTGGCCTAA > 735 NECHADRAFT_93134 NA hypothetical_protein XP_003045672.1 NA MTTQKHGLDLRATFNVRLTLTVLLIAFSQFNFGFEMSVFSGTQAMNYFEKQFGTWSPTAKKHIIDPQWLSLFNSLPYISFMIGLLAGSYVSNRWGRRMCVFTMSIWAIAAAAIVVTAKNRDHLLAGRVLNYVYIGMELAVVPIYQSEIVPARSRGFVVSTYQTSVISPRWLAGKARHEEGLAALRKLREGKMTEDGIVSEYGLLETASSRYQEKGTFKELFWKANIRQTFIVIGINFFLQTTGYTFHLVYGSVYIKSLGTINPFNINLIKSFVALVVAIATMWGCDIVGRRRLLMIGGSIQAVALMAMGIIGTVVPASNAKNSAIVAMMIVFVVGWTCGWSPNSHILSAEIPNQRLRDMSYRAGSVINVIMQFVTAFTLPYLLFPPYANLQSKVGFIYGSFAVLAVLFTYFCIPELQGRTLEEIEQLFAMNIPIRRFKDTKTLSGARVSEDIEADAKDDKSIA Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003045626 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1392 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315866).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7Z896_NECH7.gb Nectria 302893581 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003045626 NA NA pyrenomycetes sac_fungi 19714214 1392 4 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003045626.1 ATGACAACTCAAAAACACGGCCTCGACTTGCGCGCCACCTTCAACGTCCGGCTGACGTTGACGGTATTGCTGATTGCATTCTCTCAGTTCAACTTTGGGTTCGAGATGTCCGTCTTCTCTGGAACCCAAGCAATGAACTACTTTGAGAAGCAATTTGGTACATGGAGCCCGACTGCGAAGAAGCACATCATCGATCCTCAATGGCTGTCTCTGTTCAATTCACTCCCATACATCAGCTTCATGATCGGTCTCCTTGCGGGCAGCTATGTCAGCAACCGCTGGGGCAGGCGTATGTGTGTTTTCACCATGAGTATTTGGGCCATCGCCGCAGCTGCCATTGTCGTCACTGCAAAGAATAGGGACCATCTCTTAGCTGGTCGCGTTCTCAACTACGTCTACATCGGCATGGAACTTGCCGTGGTCCCCATCTACCAATCCGAAATCGTACCTGCGCGATCTAGAGGCTTTGTTGTATCCACTTACCAGACCAGTGTCATTTCTCCTCGTTGGCTCGCCGGCAAGGCTCGTCATGAGGAAGGCCTCGCAGCACTTCGCAAGCTCAGGGAGGGCAAGATGACCGAAGATGGGATCGTGTCAGAGTACGGCCTCTTGGAAACCGCTTCGTCCCGCTACCAAGAGAAAGGAACGTTCAAGGAACTGTTCTGGAAGGCCAATATTCGTCAAACATTTATTGTCATCGGTATCAACTTCTTCCTCCAGACGACTGGCTACACCTTTCATTTGGTGTATGGCTCTGTCTACATCAAGTCACTGGGCACGATCAACCCTTTCAACATCAACTTGATCAAGTCCTTTGTCGCTCTTGTCGTGGCCATCGCGACCATGTGGGGCTGCGATATTGTTGGACGACGACGCCTTTTGATGATCGGAGGTTCGATTCAAGCCGTAGCTCTGATGGCGATGGGCATCATTGGAACGGTTGTCCCAGCCTCCAACGCAAAGAACTCGGCCATTGTAGCCATGATGATCGTCTTTGTTGTGGGCTGGACGTGTGGATGGTCGCCAAACTCACATATTCTAAGCGCGGAGATCCCGAATCAGAGGCTGCGAGACATGTCTTACAGGGCCGGGTCTGTGATTAACGTAATCATGCAATTTGTCACCGCATTCACTCTCCCGTATCTTCTGTTCCCGCCTTACGCAAATCTCCAGTCAAAGGTCGGCTTCATCTACGGTTCGTTCGCCGTGCTTGCCGTGCTATTCACCTACTTCTGCATTCCAGAGCTTCAAGGGCGTACACTGGAAGAAATCGAGCAATTGTTCGCGATGAACATCCCCATCAGACGGTTCAAGGACACGAAGACGCTATCAGGTGCCAGGGTCTCTGAGGACATTGAAGCTGATGCCAAGGATGATAAGTCAATTGCTTGA > 736 NECHADRAFT_43621 NA hypothetical_protein XP_003045106.1 NA MSQSTEPGQTGPGDNNPSLSYHWAGRKDAPRESLHNNTNEPVSDAPTTVLQNPLADMTEEELIADASGLCLQKGLLEHVDVFRKAALLAKVINVPQGFESIDALSEEDKEMLRYEETHRWKAQPKMLYFLCALCAGCAIVQGMDQTVINGAQSFYFAEFKITRYALIGLTNGAPYASAALIGCWLNAPLNKWFGRRGTIAFSCLFAFITGIWQAAANTWLCFLLARFTLGLAVGAKSSTTPVYAAECAPKNIRGALTMMWQMWTAFGIMLGFAVSIAFQNLKYPNEFAPWRWMIGSTSLPPLIVGSLVYLLPESPRWYMDKGNFVEAYNSLRRLRKYDLQAARDMYLAWKFLQVEERSKEGHNIFKEFFSIRRNWRAAQSSWFCMLMQQFCGVNVIAYYSTKIFKDAGYTQSQALLISFGGGAINWLFALPAIWTIDTFGRRNLLLSTFPLMSICLFWTGANFYLPEGPVRLALLATGIYLFMAVYSPGLGPVPFTYSAEAFPLHIRALGMASATSITWAFNFLLSFTWPSMEAAFTTSGAFFWYASWNMFGLVFAYFLLPETKALSLEELDFVFSMRNRDHAKYYVKRLGWYTKKIMGRNPDSMPALYRLETTATETEIEVKPSNVESSNST Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003045060 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1902 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315865).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7Z8N1_NECH7.gb Nectria 302892448 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003045060 NA NA pyrenomycetes sac_fungi 19714214 1902 6 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003045060.1 ATGTCGCAAAGCACAGAACCTGGCCAAACAGGCCCTGGTGATAATAACCCCAGCTTAAGCTACCACTGGGCAGGCCGAAAGGATGCCCCCCGCGAGTCCCTCCACAACAACACCAACGAGCCGGTTAGCGATGCGCCCACGACTGTCCTTCAGAACCCGTTGGCCGATATGACCGAAGAAGAACTCATTGCCGATGCTAGCGGCCTATGTTTGCAAAAGGGTCTACTCGAGCACGTTGATGTTTTCCGCAAAGCAGCCCTTCTGGCCAAGGTTATCAACGTACCACAAGGGTTCGAGTCAATCGACGCTTTGAGCGAGGAGGACAAGGAGATGCTCCGCTATGAGGAGACACACCGCTGGAAAGCTCAGCCCAAGATGCTCTACTTTCTTTGTGCTCTGTGTGCAGGATGCGCTATTGTGCAGGGCATGGACCAGACGGTCATCAACGGCGCTCAGAGCTTCTACTTTGCCGAGTTTAAGATCACCAGATACGCGTTGATCGGCCTGACCAACGGTGCCCCCTATGCTTCGGCCGCACTCATCGGGTGCTGGCTCAATGCCCCCCTGAACAAATGGTTTGGACGCCGTGGTACCATCGCCTTCTCTTGTCTCTTCGCCTTCATCACCGGTATCTGGCAGGCCGCTGCCAACACATGGCTTTGCTTCCTTCTCGCTCGCTTCACGCTCGGTCTCGCTGTCGGTGCCAAGTCAAGCACCACCCCCGTCTATGCTGCCGAATGCGCCCCCAAGAATATCCGTGGAGCCTTGACAATGATGTGGCAAATGTGGACAGCATTTGGCATCATGCTGGGATTTGCTGTCTCGATCGCTTTCCAGAACCTGAAGTATCCCAACGAGTTCGCCCCCTGGCGATGGATGATTGGGTCGACATCCCTTCCCCCGCTGATCGTGGGATCCCTTGTTTACCTCCTCCCTGAGAGTCCTCGTTGGTACATGGATAAAGGAAACTTTGTTGAGGCTTATAACTCGCTTAGAAGACTCCGCAAGTATGATTTGCAGGCTGCTCGCGACATGTACCTTGCGTGGAAGTTTCTGCAGGTTGAGGAGCGCTCTAAGGAAGGCCACAACATATTCAAGGAGTTCTTCAGTATCAGGAGAAACTGGCGAGCTGCTCAGTCTTCCTGGTTTTGTATGCTGATGCAGCAGTTCTGTGGTGTCAACGTGATTGCGTACTACAGCACCAAGATCTTTAAGGATGCAGGATACACACAGTCGCAGGCTCTACTGATCTCGTTCGGCGGCGGTGCCATCAACTGGCTCTTTGCGTTGCCGGCAATCTGGACAATCGACACCTTCGGCCGCCGAAACCTTCTCCTGTCGACGTTCCCTCTCATGAGCATATGTCTGTTCTGGACTGGCGCAAACTTTTATCTTCCGGAGGGACCTGTTCGCTTGGCGCTTCTTGCGACTGGTATCTACTTGTTTATGGCTGTGTACTCCCCCGGCCTTGGTCCGGTTCCATTCACGTACAGCGCGGAAGCATTCCCGCTGCACATCCGAGCTCTGGGTATGGCTTCGGCCACATCTATTACGTGGGCCTTTAACTTTCTCCTCAGTTTCACGTGGCCTTCTATGGAGGCTGCCTTTACAACATCGGGCGCCTTCTTCTGGTATGCGTCATGGAACATGTTCGGGTTGGTGTTTGCATACTTCCTCCTTCCGGAAACCAAGGCTCTGTCACTGGAGGAGTTGGACTTTGTCTTCAGCATGCGCAACCGAGACCATGCTAAGTACTATGTTAAGCGACTGGGCTGGTACACAAAGAAGATCATGGGCCGCAATCCCGATTCCATGCCAGCACTATACCGATTGGAAACAACTGCGACAGAGACGGAGATAGAGGTCAAGCCAAGCAACGTGGAGAGCAGCAACTCGACTTGA > 737 NECHADRAFT_94696 NA hypothetical_protein XP_003045384.1 NA MSDPSKDTIRAHWKCFIACGIIVLSPFQYGLDFGLIGGLQAMPGFLKIYGYRAPETAIGWNISTTRQQLISSLMTLGAFISSSLAGFVAAKLGRKMCLWIACLLCAVANIIMMTTTHIAALYVGRLVIGLANGYFMTFSQLYIQETSPAKYRGLFLSIFQFCTSFGTLIGTIIDWATAKRPDRSAYLIPLAIIYVVPAFLFVAMIFIPESPRWLILQGRYDDGLKSLKWLRPKDSDVDKELNEIRDAINKEQETSSGVGIWDMFNNPIDRRRSLLSIGSVLLQAASGSMFIIAYKAYFFAMAKVDDPFAMSNVLSMAGLIAIIANSFIVVRYGRRRVLLTNGLVISGCFQLIIAVTYDKNPGTHVTGRVLVALSCLYMVAYNGMIASYSWLVAGEIPSQRLRSYTFGVAAAIGFLGAWLITFTAPYFINPSSLNWGPRYGYIWFPSCIVSAIWVFFFLPEVKGRTLEEIDVMFNKKLPARHFRTHKLEGEAGGDVQGKSSVEVEVHEAEKV Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003045338 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1536 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315865).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7ZAG0_NECH7.gb Nectria 302893004 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003045338 NA NA pyrenomycetes sac_fungi 19714214 1536 6 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003045338.1 ATGTCGGATCCCTCTAAGGATACCATCCGGGCGCACTGGAAGTGCTTCATCGCTTGCGGCATCATCGTCCTGTCCCCCTTCCAGTATGGACTTGACTTTGGCCTCATCGGCGGTCTTCAGGCCATGCCTGGGTTTCTCAAGATTTATGGCTACCGAGCACCCGAAACCGCGATCGGATGGAACATCTCGACCACTCGACAACAACTCATCTCATCTTTGATGACCCTTGGTGCTTTCATCAGTTCCAGTCTTGCTGGCTTCGTCGCTGCAAAGCTTGGTAGAAAGATGTGCCTCTGGATCGCATGTCTGCTCTGTGCAGTTGCCAACATCATCATGATGACCACAACTCACATTGCCGCCCTCTATGTCGGCCGTCTAGTCATCGGTCTGGCTAACGGCTACTTCATGACCTTTTCTCAGCTCTACATTCAAGAGACTAGCCCAGCCAAGTACCGAGGTCTCTTTCTCAGCATCTTCCAGTTCTGCACCTCGTTTGGCACCCTCATCGGCACCATCATCGACTGGGCAACTGCGAAGCGACCCGATAGATCCGCCTACCTCATCCCTCTTGCTATCATCTATGTCGTGCCCGCCTTCCTTTTTGTCGCCATGATCTTCATCCCCGAGTCCCCTCGATGGCTCATCCTTCAAGGTCGCTACGACGATGGTCTCAAGTCACTCAAGTGGTTGAGGCCCAAGGATTCCGACGTCGACAAGGAGCTCAACGAGATTCGAGACGCCATCAACAAGGAACAAGAGACCTCCAGCGGCGTTGGTATCTGGGACATGTTTAACAACCCCATCGACAGACGACGAAGTCTGCTGTCTATTGGATCTGTGCTCTTGCAAGCCGCCTCTGGATCAATGTTCATCATTGCTTATAAGGCCTACTTCTTTGCCATGGCCAAGGTTGACGATCCTTTCGCCATGAGCAACGTCCTCAGCATGGCCGGACTCATCGCTATTATTGCAAACTCCTTCATCGTCGTTCGATACGGACGTCGCCGGGTTCTCCTCACCAACGGACTTGTCATCTCGGGTTGCTTCCAGCTCATCATTGCTGTCACGTATGACAAGAACCCTGGCACGCATGTTACAGGCCGTGTTTTGGTCGCCCTTTCCTGCCTGTACATGGTGGCATACAACGGAATGATTGCCTCTTACTCTTGGCTTGTTGCTGGTGAGATACCATCTCAGCGCCTCCGCAGCTACACTTTCGGCGTTGCTGCCGCTATCGGATTCCTTGGTGCATGGCTCATCACCTTCACTGCCCCATACTTTATCAACCCAAGCTCATTGAACTGGGGACCACGATACGGTTACATCTGGTTCCCCTCTTGCATTGTTTCCGCCATCTGGGTCTTCTTCTTCCTTCCCGAGGTCAAGGGCCGCACCCTGGAGGAGATCGACGTCATGTTCAACAAGAAGCTTCCTGCGAGGCACTTCCGAACCCACAAGCTCGAGGGCGAAGCCGGAGGCGACGTTCAGGGCAAGTCAAGCGTCGAAGTCGAGGTCCATGAGGCCGAAAAGGTTTGA > 738 NECHADRAFT_88655 NA hypothetical_protein XP_003044238.1 NA MEKHDSHSVNQIELETTLTEVAKVATIHNTKLQKATLEGTADEHELSIHDAIRAYPQAIIWALVSSTCVIMEGYDTNLLSNFFAYSSFLIRYGRFVGVTPETPTGYQLTPAWQAGLSQGAGVGSIFGCLMCGYFVSKYGSRRVQLAALAALTAFIFIVFFAPNLPTLVVGEILCGVPWGILATTAPAYTSEVLPPVLRTYMTSYTNMCFIMGQLISAGVLKGLSTRTDEWGYKVPFALQWYLVRMGRLHEAEESLRRLQSPKATNVDPQKTLSTIIYTNNLEEQLKVGTSYWDCFKGFELRRTEIACVVFAGQILCGISFAYNSSYFFSQVGLGTSTTYSLTLGGTGLAFFGCLINWFVLMPNFGRRTIYVWGMGGMCFVLILIGILNVWTHISAVAMTQACLTLLWTFIFQLSAGQLGWALPAEMGSTRLRQKTICLARDSSNIMGTIGGTLQQYFMNPQAWNLKGYTGFVWGGTCFCMFVWSYFRLPET Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003044192 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1476 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315861).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7ZBS9_NECH7.gb Nectria 302890708 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003044192 NA NA pyrenomycetes sac_fungi 19714214 1476 14 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003044192.1 ATGGAGAAGCATGATTCGCACTCGGTCAACCAAATTGAGCTCGAGACGACCTTGACCGAAGTCGCCAAGGTAGCGACAATCCATAACACCAAACTCCAGAAGGCTACTTTGGAAGGCACTGCCGATGAACACGAACTCAGCATTCATGATGCCATCCGAGCTTATCCCCAGGCCATCATATGGGCGCTTGTGTCGTCTACCTGTGTCATCATGGAAGGCTACGACACGAACCTCCTTTCCAATTTCTTTGCCTATTCCTCGTTCTTAATTAGGTACGGCCGATTCGTGGGAGTTACTCCAGAGACCCCAACGGGATACCAGTTGACCCCGGCTTGGCAAGCCGGACTATCTCAGGGCGCAGGAGTCGGCTCTATATTTGGCTGCCTGATGTGTGGCTACTTCGTGTCCAAGTACGGCTCTCGACGGGTGCAGCTAGCTGCTCTGGCTGCCCTCACTGCCTTCATCTTTATCGTCTTCTTTGCCCCCAACTTGCCCACGTTGGTTGTTGGCGAGATCCTCTGCGGTGTCCCATGGGGCATTCTCGCCACAACGGCTCCGGCCTACACTTCGGAAGTTCTACCACCAGTTCTCCGGACCTACATGACTTCATATACGAATATGTGCTTCATCATGGGCCAGCTGATTTCTGCTGGTGTTCTCAAAGGACTCTCCACGCGCACTGATGAATGGGGCTACAAAGTTCCCTTTGCCTTGCAATGGTATCTAGTCAGAATGGGCAGGCTGCACGAAGCCGAAGAGTCTCTGCGCCGCCTACAGTCGCCAAAGGCCACCAACGTCGATCCTCAGAAGACGCTCTCCACCATCATTTACACCAATAACCTCGAGGAGCAGTTAAAGGTCGGAACTAGCTACTGGGACTGCTTCAAGGGCTTTGAGCTCCGCCGTACCGAGATTGCTTGCGTCGTCTTTGCTGGTCAGATCCTGTGTGGAATCTCCTTCGCCTATAACAGCTCCTACTTTTTCTCCCAAGTTGGTCTCGGAACGAGCACGACCTACTCTCTTACGCTTGGAGGAACCGGCTTGGCATTCTTTGGCTGTCTGATCAATTGGTTCGTCCTTATGCCAAACTTTGGCCGACGAACGATTTACGTCTGGGGCATGGGCGGCATGTGTTTTGTGCTCATTCTCATCGGTATTCTCAACGTCTGGACTCACATCTCGGCTGTCGCGATGACACAGGCCTGTCTCACCCTCCTTTGGACTTTCATCTTTCAGCTATCTGCCGGCCAGCTTGGCTGGGCCCTCCCTGCCGAAATGGGCTCGACTCGCCTTCGACAAAAGACCATTTGTCTCGCTCGCGACTCGTCTAATATTATGGGCACCATTGGAGGCACTCTGCAGCAGTACTTTATGAACCCGCAGGCGTGGAACCTCAAGGGTTATACTGGGTTTGTCTGGGGCGGTACTTGCTTTTGCATGTTTGTCTGGAGCTACTTCCGTCTGCCTGAGACCTAG > 739 NECHADRAFT_48316 NA hypothetical_protein XP_003043804.1 NA MIVIGAWGCSLVGWGGTFIEGDWGWRMPIFAQLVPPVLMLVLGFFLLPESPSWLLMNGQRERAAQCLRKFRGPDFDAEAALVSMEATLAKERSLNEQGSSYLECFKGSNLRRTLIVVQVYVAQQFVGSGFVSGYLPYFFTLSGVRNPVGVAQISYSLQLLGNILSWPLVDRLGRRPMIVWGTAALAAVLLVIGGISTINKSKPVLSAVVAFMSIWGFLYQLTLGAVAYAVGGETPTPRLRQKTYSINVMSNTAASVVVTQLIPILINPGKANLGGKVAFVFFGPSCLLFISLWLTFPELKGRSYLEMEEMFQKGVPARQFKSYVCKTDIIQPEDGEKPVVITKD Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003043758 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1035 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315858).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7ZCR9_NECH7.gb Nectria 302889837 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003043758 NA NA pyrenomycetes sac_fungi 19714214 1035 9 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003043758.1 ATGATAGTCATTGGGGCGTGGGGATGCTCACTTGTGGGCTGGGGCGGAACCTTCATTGAGGGTGATTGGGGCTGGCGGATGCCTATCTTTGCCCAGCTTGTGCCTCCAGTCTTGATGTTGGTTCTTGGATTTTTCCTCTTGCCAGAATCGCCATCTTGGCTCCTGATGAACGGCCAGCGCGAGAGGGCAGCTCAGTGCCTGCGCAAGTTCCGTGGGCCAGATTTTGACGCCGAGGCGGCCTTGGTTTCCATGGAAGCAACTTTAGCGAAAGAACGGTCTTTGAACGAGCAGGGTTCGTCCTATCTGGAGTGTTTTAAAGGATCGAATCTGCGTCGAACCCTTATTGTTGTCCAAGTTTACGTCGCTCAGCAGTTTGTCGGGTCGGGTTTCGTGTCGGGATACCTCCCATATTTCTTTACTCTCTCTGGCGTTCGCAACCCAGTCGGCGTAGCCCAAATCTCATACAGCCTTCAGCTGCTTGGCAACATCTTGTCCTGGCCATTGGTCGACAGGCTAGGCCGCAGGCCCATGATTGTTTGGGGAACCGCAGCATTGGCAGCTGTCTTGCTTGTCATTGGTGGTATCAGCACCATAAACAAGAGCAAGCCTGTTCTATCAGCCGTGGTGGCCTTCATGTCTATCTGGGGCTTCTTGTACCAACTTACCCTGGGAGCGGTCGCATACGCTGTAGGAGGAGAAACACCCACGCCTCGCCTCCGACAAAAGACATACTCGATCAACGTCATGAGTAACACGGCCGCAAGTGTCGTTGTCACCCAGCTGATCCCGATCTTGATCAACCCCGGAAAGGCCAACCTTGGAGGAAAAGTTGCCTTTGTATTCTTTGGACCATCATGCCTGCTTTTTATCTCCCTGTGGCTTACCTTCCCCGAGCTGAAGGGTCGAAGCTATCTGGAGATGGAGGAGATGTTCCAAAAGGGAGTGCCAGCACGCCAGTTCAAGAGTTATGTCTGCAAGACAGATATCATTCAGCCTGAGGATGGGGAGAAGCCAGTTGTTATTACGAAGGACTAA > 740 NECHADRAFT_81009 NA hypothetical_protein XP_003042521.1 NA MPSFKQLIAYGLILFSAITIGYDSGYLNGVLGAEDFVQRYGTSSDDGGPKYLTPYTKSLFSSLLIVGTTLGCLITPMITNKIGRKGVLIVASCVYAAGVILQTAGLPPAAFVIGRVLLGGAIGFISNVVPAYLMECSTPTNRGPLMAWYLQFLTAGNVLACGINFGTSEYTDSRSWRVTIAFQLFFAIVILFGSLLIPESPFYLLQRDRPHDARRSIATLLNADVDSNQVDEAMNEIEGHLADIVSHGDVKILECFQGTNRTRTFLGMAMSFFTIATGITFWFGYGTTFFMASGVDNSYLISLVLAITNCLFTAPSIYLIERFGRRWSLLVGGVIMALTQILTGVMHSASPDSTASKNMLVAGAIIFIAAYAPTWGIGGWIVMTEPFSNRLRITQTSLVLGFYWVITWLVGFVTPYMVDETAADLGVNVAYIWFGIGLLSIIWAFFFVPELAGLSRAEVDLLFERRVPAWRSVAWKRSLRTLQGAAPFEIDGQNASLEEVKAMGADEKS Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003042475 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1530 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315852).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7ZGI2_NECH7.gb Nectria 302887265 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003042475 NA NA pyrenomycetes sac_fungi 19714214 1530 6 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003042475.1 ATGCCATCTTTCAAGCAACTCATTGCCTATGGGCTCATCCTCTTCTCCGCAATCACTATTGGCTATGATTCGGGCTACCTCAATGGCGTGTTGGGCGCCGAGGACTTTGTCCAGAGATATGGAACTAGTTCCGATGATGGAGGCCCCAAGTACTTGACTCCTTATACCAAAAGTCTCTTCTCGTCTCTGCTTATTGTCGGAACTACGCTTGGCTGCCTTATCACGCCAATGATTACGAACAAGATTGGCCGGAAGGGTGTCTTGATTGTTGCGTCGTGTGTATATGCCGCTGGAGTCATTCTCCAAACAGCTGGATTGCCCCCTGCAGCCTTCGTCATCGGCCGCGTTCTGCTTGGTGGCGCCATTGGCTTCATTTCCAACGTGGTCCCAGCATACCTCATGGAATGCTCCACGCCGACAAATCGCGGACCTCTCATGGCTTGGTATCTTCAATTCCTAACCGCCGGCAATGTGCTGGCCTGTGGTATCAATTTCGGCACTTCCGAGTACACGGATTCGCGATCGTGGAGGGTTACGATTGCTTTCCAGCTGTTCTTCGCAATCGTCATCCTTTTTGGCTCTCTTCTGATTCCCGAATCCCCTTTCTATCTGCTGCAGCGAGATCGTCCCCATGATGCCCGCCGTTCTATCGCGACACTTTTGAATGCAGATGTTGACTCGAACCAAGTCGACGAGGCCATGAATGAGATAGAAGGTCACCTGGCAGATATCGTATCCCATGGCGATGTGAAAATTTTAGAGTGCTTCCAAGGAACGAACCGGACGCGAACCTTTCTCGGCATGGCCATGTCTTTCTTCACCATCGCAACTGGCATCACCTTCTGGTTCGGGTATGGCACGACTTTCTTCATGGCCTCCGGGGTTGACAATTCATACCTCATCTCACTCGTCCTTGCCATAACGAACTGCCTTTTTACTGCCCCTTCAATCTATCTCATCGAGCGTTTCGGGCGGAGATGGTCCCTCCTGGTCGGCGGCGTCATCATGGCATTAACACAAATCCTCACGGGCGTGATGCACAGCGCAAGTCCTGATAGCACTGCAAGCAAGAACATGCTCGTAGCGGGTGCCATCATTTTCATCGCAGCTTACGCCCCGACCTGGGGAATTGGAGGCTGGATTGTCATGACTGAGCCATTCTCGAACCGGCTTCGCATTACCCAAACGTCTCTGGTTCTCGGTTTCTACTGGGTCATCACATGGTTGGTTGGCTTTGTGACGCCGTACATGGTCGACGAGACGGCGGCCGATCTCGGCGTCAATGTTGCGTACATCTGGTTTGGCATCGGTCTCTTATCGATAATATGGGCCTTCTTTTTCGTTCCAGAGCTTGCTGGCCTTTCTCGGGCAGAGGTTGATCTTCTGTTTGAACGGCGCGTTCCTGCGTGGCGATCTGTGGCCTGGAAAAGAAGTCTGAGGACTCTGCAAGGAGCTGCTCCTTTTGAAATCGATGGACAGAACGCGTCTTTAGAGGAGGTAAAGGCCATGGGTGCTGACGAGAAGTCATAG > 741 NECHADRAFT_42015 NA hypothetical_protein XP_003042574.1 NA MGQKEPQSDVVDHDLPEDHVPQGSTLPFWKQTELRKLYGMMFFLFLGSTTLGYDGSLLNGLQTMDTWQNFFDHPTGSRLGIFGAMPGFGGLFVLIFAPYIADGLGRKKGTAIGCVFVVAGALMQCFPQKNHSSRDVLYLIGRFVMGFGSNISNGTCPLLITEVAHPRHRGRVTTIYNTLWYLGSIVAAWTCFGTLKNQTGNLQWVLPTGLQCLMPGIQLLSIWFVPESPRWLISKGREEEARQVLIKYHGNNDPDDEFVRWEYTEILNTLRLEREASGNGWSELWRTKGNRKRCALIIATAIFSQCSGNGLVSYYLAAILETIGITDSTTQSLINGGLTIWCWLVSLFAAFFVDRIGRRFLFLFAGVGMLISFSVWTACSAVYAKTESASAGIAVVAMIFLFYGVAGAAWPGLTVSYTVEILPYSIRAKGLTLCFCFTALSGVFNQWVNPLGLQQLEWRFYFVYIAVLVIECLTIYFFFVETKGPTLEEIAVLFDGDDSAAGIAKLQAQEKSVPLTKEVEHA Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003042528 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1569 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315852).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_predicted_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7ZGP7_NECH7.gb Nectria 302887371 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003042528 NA NA pyrenomycetes sac_fungi 19714214 1569 6 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003042528.1 ATGGGTCAGAAGGAGCCTCAGTCCGACGTGGTCGACCATGACCTCCCGGAGGATCATGTCCCCCAAGGTTCAACCCTACCCTTCTGGAAGCAAACCGAGCTTCGGAAACTCTACGGCATGATGTTCTTCCTCTTCTTGGGTTCTACAACCCTGGGATACGATGGAAGTTTACTTAACGGACTTCAGACAATGGATACTTGGCAGAATTTCTTTGATCATCCCACCGGTAGCCGACTCGGTATCTTTGGCGCCATGCCTGGCTTCGGTGGTCTCTTCGTCCTCATATTCGCTCCTTACATCGCAGACGGACTCGGCAGAAAGAAGGGTACAGCAATCGGTTGCGTCTTTGTCGTTGCTGGTGCTCTGATGCAGTGCTTTCCCCAGAAGAACCACAGCTCCCGAGACGTTTTATATCTGATTGGCCGCTTTGTCATGGGTTTTGGATCCAACATTTCCAATGGAACTTGCCCGTTGTTGATCACCGAAGTTGCACACCCCAGGCATCGCGGACGCGTCACGACTATTTACAACACGCTCTGGTACCTTGGAAGCATTGTAGCCGCATGGACTTGTTTCGGAACTCTCAAAAACCAGACTGGTAACCTCCAATGGGTTCTCCCTACCGGTCTCCAGTGCCTGATGCCCGGGATCCAACTCCTATCCATCTGGTTCGTCCCTGAGAGCCCCCGATGGCTTATCAGCAAGGGAAGAGAAGAAGAAGCTCGTCAGGTTCTTATCAAGTACCACGGAAACAACGACCCAGACGATGAGTTTGTGCGGTGGGAGTATACCGAGATTCTTAACACCCTCAGGCTTGAGCGCGAGGCATCTGGCAACGGATGGTCTGAGCTGTGGCGAACAAAGGGTAACCGAAAGAGGTGTGCCCTGATCATTGCTACTGCCATCTTTTCTCAGTGCAGTGGAAATGGACTGGTGTCATACTATCTTGCTGCCATTCTTGAAACCATTGGCATTACCGATTCAACCACTCAATCCTTGATCAACGGCGGCCTCACAATCTGGTGCTGGCTCGTCTCCCTCTTCGCCGCCTTCTTCGTCGACCGAATCGGACGCCGCTTCCTCTTCCTCTTTGCAGGAGTAGGCATGCTCATATCCTTCAGCGTCTGGACAGCTTGCAGCGCCGTATACGCAAAGACCGAGTCTGCTTCTGCAGGTATTGCTGTTGTGGCCATGATCTTCCTCTTCTACGGTGTTGCGGGAGCTGCTTGGCCCGGCTTGACTGTTTCTTATACCGTTGAGATTCTGCCGTATAGCATCAGAGCCAAGGGATTGACTCTTTGCTTCTGCTTCACTGCTCTGAGCGGTGTGTTTAACCAATGGGTGAACCCTCTTGGTCTTCAGCAGCTCGAGTGGCGCTTCTATTTTGTTTACATCGCTGTCTTGGTAATTGAGTGTCTGACCATCTACTTCTTCTTCGTCGAGACCAAGGGACCTACTCTGGAGGAGATTGCCGTTCTGTTCGACGGTGACGATTCGGCCGCAGGTATTGCAAAGCTTCAGGCGCAGGAAAAGTCGGTTCCCCTTACCAAGGAAGTTGAGCATGCGTGA > 742 NECHADRAFT_81178 NA hypothetical_protein XP_003042227.1 NA MSAKHNNAGQVAAASEVRRLLQEDKTLWYKKPNLFRLYLLLVPAALGVEMTTGYDGSVLNALQAVDLWNKHYGNPTGATLGVISAALAIGTAAGVPIMPYLNDHFGRKFCVIFGSIIVAIVGMLIASRIVMGLGSPVSLAGAAQLVVELAYPKERSTIVGFFQGTWFAGAILAAGVTLGTYNWTNNWSWRLPTLFQILPSLLTIIFIWFIPESPRWLVAHDRHEEALQILIKYHAEGDETSAFVAAEFYQIRETLRKEKEAAKQPWKELLTGKANRHRVFVAICVGFFTQWSGNGLISYYLAKILALVGITSRRTQNQINLGLSCWNLVTAVCSSIAASYLLRRRQLMAGYISMTILFACYTAGSAVYAEDNENKAAAKAVIVLIFLYSAGYNLMQPFQYLYIGEIFPFIQRSKGIAIMQMSTRIASAFNLLVNPIGMADLAWKFFLVYCVWLVIETVVVYFFFPETQGPTLEEMALVLEGDNAAVEVVNSKAARLEEKEHA Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003042181 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1509 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315849).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7ZHL2_NECH7.gb Nectria 302886674 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003042181 NA NA pyrenomycetes sac_fungi 19714214 1509 6 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003042181.1 ATGTCTGCAAAGCACAACAACGCAGGCCAAGTCGCCGCCGCCTCGGAGGTCCGCCGTCTCCTCCAAGAGGACAAAACACTATGGTACAAGAAGCCCAACCTCTTCAGGCTCTATTTGTTGCTCGTGCCTGCTGCCCTCGGCGTCGAAATGACCACTGGGTACGATGGAAGCGTCCTCAACGCTCTCCAAGCTGTCGATCTGTGGAACAAGCATTATGGCAATCCGACCGGTGCGACTCTTGGTGTCATCTCTGCTGCCCTGGCCATCGGGACAGCAGCTGGAGTCCCAATCATGCCGTACCTGAACGATCACTTTGGACGCAAGTTTTGTGTCATTTTTGGCTCTATAATAGTAGCCATCGTCGGAATGCTCATCGCCTCACGTATCGTCATGGGCCTAGGCTCTCCAGTTTCCCTCGCAGGTGCTGCCCAACTTGTTGTCGAGCTCGCTTACCCCAAGGAACGATCCACCATTGTCGGCTTCTTCCAGGGGACTTGGTTTGCCGGAGCCATCCTCGCTGCGGGTGTCACTCTTGGAACGTATAACTGGACCAACAACTGGAGTTGGCGTCTTCCTACCCTCTTTCAGATTCTTCCCTCCTTGCTTACCATCATCTTCATCTGGTTCATCCCCGAGTCTCCTCGCTGGCTAGTAGCTCACGATCGTCACGAAGAGGCACTTCAAATCCTCATCAAGTACCACGCCGAAGGTGATGAGACGTCTGCCTTTGTAGCTGCCGAGTTCTATCAGATCCGAGAGACGCTCCGCAAAGAAAAGGAAGCAGCAAAACAACCCTGGAAAGAGCTTCTCACTGGCAAAGCCAACCGTCATCGAGTCTTTGTTGCTATTTGCGTCGGCTTCTTCACCCAATGGAGTGGCAACGGTCTCATTAGCTACTACCTAGCCAAGATTCTCGCTCTGGTCGGCATCACCTCCCGAAGGACCCAGAACCAAATCAACCTCGGTCTTAGTTGCTGGAATCTCGTAACTGCGGTCTGCTCAAGCATAGCTGCCAGCTACTTGCTACGCCGCAGACAGCTCATGGCGGGATACATCAGCATGACTATCCTGTTTGCCTGCTACACTGCCGGATCAGCCGTTTACGCTGAAGACAACGAAAACAAAGCTGCTGCCAAGGCCGTCATCGTGTTGATCTTCCTGTACAGCGCCGGCTACAACCTCATGCAGCCCTTCCAGTATCTCTACATCGGCGAGATCTTTCCCTTCATCCAGCGATCCAAGGGTATTGCCATCATGCAAATGTCGACGCGTATTGCTTCCGCATTTAACTTATTGGTGAACCCTATTGGAATGGCGGACCTGGCATGGAAGTTCTTTCTCGTATACTGCGTCTGGCTCGTGATCGAGACTGTGGTGGTTTACTTCTTCTTCCCCGAGACTCAGGGACCTACGTTGGAGGAGATGGCACTGGTTCTTGAGGGAGACAACGCTGCCGTCGAGGTTGTCAACTCCAAGGCTGCCAGGCTCGAAGAGAAGGAACATGCTTAA > 743 NECHADRAFT_86985 NA hypothetical_protein XP_003042048.1 NA MGSSSHKERKGAAAVVGRELAAVLPNDPRPWYRTPHLLKLNLLLLIPLVSSGAIGYDGSMMNGLQTLPQWRQYFGNPQGAMLGAMNSVYPAGKVVALFLVTYVCDRFGRKTAMAIGALTCVAFAIMQAVSQNLHTFIAARAILGFFTSFLAQPSPILITELAYPTHRGKLTALYNTSFYLGGIIAAWCTFGTFKLDTTWSWRIPSLLQGALPALQLLTIYFLPESPRWLVAHGRREEARKILAEYHAGGDYDAPLVHFEMAEIEGALTHEADAMSQNSWLELVRTPANRRRTLIAVIVGWFAQWNGINLVSYYLVLVLNTIGITEVKDQTLINGLLQISNWLAAIFVGAMLVDRLGRRTLFLTSTCGMCVSYIIWTALSSHFASTRSEETGRAIVGFVFITFFFYAIAWAPLLQAYIVEIYPYTLRGRGVSIMYISTFVGLVVGNQVNPIAMGKIGWKYYIVFCCILAMLIVVIWFLFPETKGHTLEEIQEVFEGKNGALHAGKLADIEGGDLEKENKKDKVDQVELA Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003042002 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1587 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315848).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7ZI65_NECH7.gb Nectria 302886315 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003042002 NA NA pyrenomycetes sac_fungi 19714214 1587 11 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003042002.1 ATGGGTTCTTCATCGCACAAGGAGAGAAAGGGGGCGGCCGCAGTCGTCGGCCGTGAGCTTGCTGCAGTGCTTCCCAACGATCCTCGACCATGGTATCGCACGCCTCATCTTCTCAAGCTCAACCTCCTCCTCTTGATCCCTCTCGTGTCATCCGGCGCAATTGGCTACGATGGATCCATGATGAACGGTCTTCAAACACTCCCTCAATGGCGACAATATTTTGGCAACCCTCAAGGTGCCATGCTCGGAGCCATGAACTCGGTCTACCCTGCCGGCAAAGTAGTTGCCCTCTTCCTCGTCACCTACGTCTGCGATCGATTTGGTAGAAAGACTGCCATGGCGATTGGCGCCTTGACATGTGTTGCATTTGCCATCATGCAGGCTGTGTCGCAGAACCTTCACACGTTCATTGCCGCGAGAGCTATCCTCGGATTTTTCACCAGTTTCCTAGCTCAGCCTAGCCCTATCCTCATTACAGAGCTTGCGTACCCGACGCATCGTGGCAAGCTGACAGCCCTCTACAACACTTCTTTCTACCTGGGTGGTATCATTGCCGCGTGGTGCACCTTCGGAACATTCAAGCTCGACACGACGTGGAGCTGGAGAATCCCCTCTCTTCTGCAAGGAGCTCTCCCCGCTCTTCAGCTTCTCACGATCTACTTCCTCCCCGAATCGCCTCGATGGCTCGTCGCACACGGTCGAAGGGAAGAAGCTCGAAAAATCCTGGCCGAATACCATGCTGGAGGTGACTACGATGCCCCTCTTGTCCACTTTGAGATGGCAGAGATTGAGGGTGCTTTGACGCACGAGGCCGATGCCATGTCGCAGAACTCTTGGCTCGAGCTTGTCCGTACACCTGCGAACCGCAGACGTACTCTTATCGCTGTTATTGTTGGTTGGTTCGCTCAGTGGAACGGCATCAACCTTGTCAGCTACTACCTCGTCCTCGTTCTCAACACTATCGGCATCACCGAGGTCAAGGACCAGACTCTCATCAACGGTCTGCTGCAAATCTCCAACTGGTTGGCTGCCATCTTCGTTGGTGCCATGTTGGTCGATCGTCTCGGACGCCGAACCCTGTTCCTCACCTCGACATGTGGAATGTGCGTCTCATACATCATCTGGACCGCTCTTAGCTCTCACTTTGCTTCGACAAGGAGTGAGGAAACTGGCCGAGCTATTGTTGGTTTCGTCTTCATTACTTTCTTCTTCTACGCCATTGCGTGGGCTCCTCTGCTTCAGGCTTACATCGTCGAGATTTACCCCTACACTCTTCGCGGTCGTGGTGTTTCCATCATGTACATCAGCACCTTTGTCGGCTTGGTGGTCGGAAACCAGGTCAACCCCATCGCCATGGGCAAGATTGGCTGGAAGTACTACATCGTCTTCTGCTGCATCTTGGCCATGCTCATTGTTGTCATCTGGTTCCTTTTCCCAGAGACCAAGGGTCACACGCTTGAGGAGATCCAAGAAGTGTTTGAGGGCAAGAATGGTGCTCTCCACGCTGGAAAGCTTGCGGATATCGAGGGTGGAGATTTGGAGAAGGAGAACAAGAAGGACAAGGTTGATCAGGTTGAGCTTGCTTAA > 744 NECHADRAFT_55738 NA hypothetical_protein XP_003041514.1 NA MPFAVGTSTTKQDLAVAQAEAPQLAKVKWWTDPGMRVLYFYAAILCVCSATTGYDGSMLNTSQTMDDWQDYFGHPTGSKLGILNSIYQIGSISSFPFAPFMADHFGRKIPITVGCLVMILGAFLSAFTNGFGMYLGGRFLVGFGNSLAQLSCPVLLTEICHPQHRAIVTAIYNCLWNLGATLCAFIGLGTINISSDWSWRSITLIQAVPSLIQICFIWWIPESPRWLMAHERHEQALGILAKYHANGDVNNATVQFEYNEIKETIALEYQAQKNGSYLDFLRTRGNRYRLMLLVSLGIISQYSGNALISNYSNIIYEGAGIKDQAQKTGLNGGENMLKLFVAIGCSMGIDRFGRRPLFLTATVGMMLFFLAWTIVAARFEATGETEIKRLGYPQIALIWLFDVCYSIAWSGLIVAYALEICPFRLRARGLMIMNFFIQVALTIGNQTNPIALENLPNNWNFWCFYTVWIAVELVFVYFFYIETKGPTLEEIARIFDGDDANVAQVDYKDTEKQSVIETSEHVRNTERNDL Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003041468 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1593 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315843).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_predicted_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7ZJK9_NECH7.gb Nectria 302885242 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003041468 NA NA pyrenomycetes sac_fungi 19714214 1593 Unknown mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003041468.1 ATGCCTTTCGCCGTCGGTACTTCGACTACCAAACAGGACCTCGCCGTAGCTCAGGCCGAGGCCCCTCAGCTCGCCAAGGTCAAATGGTGGACTGATCCTGGAATGCGCGTGCTGTACTTCTACGCCGCTATTCTCTGTGTCTGCTCTGCTACCACTGGTTACGATGGCTCCATGTTGAACACTTCTCAGACCATGGACGATTGGCAGGATTACTTTGGTCACCCCACAGGCTCGAAGCTTGGCATTCTCAACTCTATCTACCAGATTGGTAGCATCTCCAGTTTCCCATTCGCTCCCTTCATGGCCGATCACTTTGGTCGTAAGATCCCCATCACCGTGGGATGTCTTGTCATGATCCTTGGTGCTTTCCTTTCCGCCTTCACTAATGGCTTTGGCATGTACCTTGGCGGTCGATTCCTCGTGGGTTTCGGAAACTCTTTGGCCCAGTTATCTTGCCCTGTTCTGCTCACAGAGATCTGCCACCCTCAGCACCGTGCGATCGTCACTGCCATCTATAACTGCCTCTGGAATCTTGGTGCCACACTCTGCGCTTTCATCGGTCTTGGTACGATCAACATTAGCAGCGACTGGTCGTGGCGATCCATCACCTTGATCCAAGCCGTACCATCTTTGATTCAGATCTGCTTCATTTGGTGGATTCCTGAATCCCCTCGTTGGCTCATGGCTCACGAACGTCATGAGCAAGCCCTTGGCATCCTCGCAAAGTATCATGCCAACGGCGATGTCAATAATGCAACTGTGCAGTTCGAGTACAACGAAATTAAGGAAACCATCGCCCTTGAGTACCAGGCCCAGAAGAACGGCAGCTACCTTGATTTCCTTCGAACTAGGGGCAACCGTTACCGTCTCATGCTCCTGGTCTCCCTAGGTATCATCTCGCAGTACTCTGGTAACGCTTTGATCAGCAACTATTCCAACATTATCTACGAGGGCGCTGGAATCAAGGACCAAGCCCAAAAGACCGGATTGAACGGCGGAGAGAACATGCTGAAGCTTTTCGTTGCTATTGGCTGCTCGATGGGAATTGATCGCTTCGGTCGTCGCCCACTCTTCCTTACTGCTACTGTCGGTATGATGTTGTTCTTCTTGGCCTGGACAATTGTTGCCGCTCGCTTCGAAGCCACCGGTGAGACGGAGATTAAGCGCCTTGGATACCCCCAGATTGCCCTCATCTGGCTCTTCGACGTCTGCTACTCCATTGCCTGGTCCGGTCTCATTGTCGCCTACGCTCTTGAAATCTGCCCATTCAGACTCCGTGCTCGTGGCCTCATGATCATGAACTTCTTCATCCAAGTTGCTCTCACCATCGGCAACCAGACCAATCCCATCGCTCTCGAGAACCTTCCCAACAACTGGAACTTTTGGTGCTTCTACACTGTTTGGATCGCGGTCGAGCTCGTCTTCGTTTACTTCTTCTATATCGAAACCAAGGGCCCGACTCTTGAAGAGATCGCGAGAATCTTCGATGGCGATGACGCTAATGTCGCACAAGTCGACTACAAAGACACTGAGAAGCAGTCTGTCATTGAGACCTCGGAACATGTGCGCAATACCGAGCGCAATGATCTTTAA > 745 NECHADRAFT_44379 NA hypothetical_protein XP_003041473.1 NA MPSGDAITIASAAFLAVGGFLFGYDSGIISSTIALPHFKEYFNSPSDDTAGGIVSSFQGGAVLGTMINMAVADILGRKMTIFSGSVVSLLGSSLQAGSTSMAMLIVGRFIGGMAVGMLTSTIPMYASEISTPKWRGALSGLLQWFLSWGFLVAQWLGYGCSFVKTDFSWRFPLAFQCVPALILVTGIWFLNESPRWLMEKDKHEEARIVLNKLRKGENASQIDLEFIEIRDVIAADREIGKVSAMSIITKPSWRKRLLLGCGIQAFGPLSGINVINYYGPRIYELLGIGTQTSLMIIGISGALSIVYCTIGLWMLDKVGRVKPLMVSAAFLGASLLVNAVQAQYINPDNANQLRSMVAMNFVFSLFYTPLGIISWVYPAEIFPVEVRALGNAITTFTNWLVNLVFAQFSPSALTHIGFRYFYVFFVFNLIAFVCFWLFYPETKGRTLEQMDVLFGDQLVPHALDDPIGAMAMQKEASVSAHVEERQV Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003041427 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1464 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315842).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7ZJL5_NECH7.gb Nectria 302885159 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003041427 NA NA pyrenomycetes sac_fungi 19714214 1464 7 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003041427.1 ATGCCCAGCGGCGATGCCATCACCATTGCCTCGGCGGCCTTCTTGGCCGTCGGAGGTTTCCTCTTTGGCTACGACTCGGGCATCATCAGCTCCACCATTGCTCTTCCTCACTTCAAGGAATACTTTAATTCCCCTAGTGATGACACTGCTGGAGGCATCGTCAGTTCTTTTCAGGGCGGCGCCGTCCTCGGAACTATGATCAACATGGCTGTCGCGGATATCCTTGGTCGTAAGATGACCATCTTCTCCGGGTCTGTGGTTTCGCTCCTCGGTTCGTCTCTGCAGGCCGGATCCACGTCGATGGCCATGCTCATTGTCGGCCGGTTCATCGGCGGCATGGCCGTGGGCATGCTGACCAGTACGATCCCGATGTACGCCTCCGAGATCTCGACGCCCAAGTGGAGAGGTGCTCTGTCTGGTCTTCTCCAGTGGTTTCTCAGCTGGGGCTTCTTGGTGGCACAGTGGCTAGGTTATGGGTGCTCATTTGTCAAGACAGACTTCTCTTGGCGATTCCCCCTCGCTTTCCAGTGCGTCCCTGCCCTTATCCTCGTGACCGGTATCTGGTTCCTGAACGAGTCGCCTCGATGGCTCATGGAGAAGGATAAACATGAAGAAGCACGAATCGTCCTCAATAAGCTACGAAAAGGCGAGAATGCTTCCCAAATCGACCTCGAGTTTATAGAGATCCGAGACGTCATCGCCGCCGACCGGGAGATTGGCAAGGTGTCTGCCATGTCCATCATCACAAAGCCCTCGTGGAGGAAGCGACTCTTGCTCGGGTGTGGAATCCAGGCTTTTGGTCCCCTCTCTGGCATCAACGTTATTAACTACTATGGACCTCGTATCTACGAGCTCTTGGGCATCGGCACACAGACCTCGTTGATGATCATCGGTATTAGCGGTGCTCTCTCGATCGTCTACTGCACCATCGGTCTCTGGATGCTTGACAAGGTCGGCCGCGTCAAGCCACTCATGGTCTCGGCTGCCTTCCTTGGTGCCTCTCTTCTCGTCAACGCCGTTCAAGCACAGTACATCAACCCCGACAATGCCAACCAACTACGCTCCATGGTGGCTATGAACTTTGTATTCAGTCTGTTTTATACTCCTCTGGGTATCATCTCCTGGGTCTACCCGGCCGAGATCTTTCCCGTCGAGGTACGCGCCTTGGGTAACGCCATTACCACGTTTACGAACTGGCTCGTCAACCTTGTCTTTGCGCAATTCTCCCCAAGCGCACTCACTCATATCGGATTTCGCTACTTTTACGTCTTCTTCGTCTTCAACCTTATCGCCTTTGTCTGCTTTTGGCTCTTTTACCCTGAAACCAAAGGCCGCACTTTGGAGCAGATGGATGTACTTTTCGGTGATCAGCTCGTCCCTCACGCACTCGATGACCCGATTGGTGCTATGGCTATGCAGAAAGAAGCCTCGGTGTCAGCACATGTTGAAGAACGGCAAGTTTAA > 746 NECHADRAFT_54362 NA hypothetical_protein XP_003041391.1 NA MHLKNNTHPTWYKDPGLRKNVWHCVGFYFAVFYLGYDASLMNALQAIPEWEEYFNYPSGNTLGLISASLFLPAIVTPFAASWINGLWGRKWCLAIGSILLILGAFLNAFAKNIGTFIGGRVVIGASGPFGKITGIALLQELAHPRLRPYVATAYYSNYYVGQIVAAWFGYGALSWPSTEWRWRAPCLFQAFAPAVVLIHLLFVPESPRWLVDHDRSEEALKVLADEHANGDINDELVRYEYDEICRALQLEKENNNAKYTDFLKTPGNRRRLLVLVTMGTGSNWVGNGIIAYYLSPALKLVGITSSSAIAGINGGMAIWSLLWAYAGAMSAERVGRRTLWITGTAGMCAAYAVITGLSGSFAENPSHSVGIAVVPMMYIFKTFYCISWSPLPFAYGAEILPYNLRLKGLSIELSVQSVALAFNQWVNPVALEAIAWKYYIVYIAVIAMYLVLILFFFPETRNMTIEEVSILFDTGRKGDAAAATRKFINDKSEKEREILGDDDDVEKGPTISKIERI Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003041345 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1554 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315841).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7ZJZ7_NECH7.gb Nectria 302884994 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003041345 NA NA pyrenomycetes sac_fungi 19714214 1554 13 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003041345.1 ATGCATCTCAAAAACAACACCCACCCAACATGGTACAAGGATCCGGGTCTCCGCAAGAATGTCTGGCACTGCGTGGGCTTCTATTTCGCTGTATTCTACTTGGGATACGACGCTTCTTTAATGAATGCGTTGCAGGCGATCCCCGAGTGGGAGGAATACTTCAATTATCCCTCGGGGAACACGCTCGGCCTCATATCTGCGAGTTTGTTCCTCCCTGCTATCGTTACACCCTTTGCAGCTTCTTGGATAAACGGCCTCTGGGGTAGAAAGTGGTGCTTGGCCATTGGATCTATCCTCCTGATCCTCGGTGCCTTCCTCAATGCCTTTGCCAAGAACATTGGTACCTTCATCGGTGGGAGGGTAGTTATTGGAGCAAGCGGGCCTTTTGGGAAGATAACAGGCATTGCACTGCTTCAGGAACTCGCCCATCCTCGTCTTCGGCCGTACGTTGCCACAGCTTACTACAGCAACTACTACGTAGGCCAGATTGTTGCCGCCTGGTTCGGCTATGGAGCCCTATCCTGGCCGTCAACCGAGTGGAGATGGCGAGCACCTTGTTTGTTTCAGGCCTTTGCCCCAGCAGTTGTTCTGATCCATCTTCTCTTCGTTCCTGAGAGTCCACGATGGCTGGTCGACCACGACCGGTCCGAAGAAGCACTCAAGGTTCTTGCCGACGAACACGCCAACGGTGACATCAACGATGAGTTGGTCAGATACGAGTACGATGAAATTTGCCGCGCTCTACAACTTGAGAAGGAAAACAACAACGCCAAGTATACCGACTTCCTCAAGACCCCTGGTAACAGGCGGCGGCTGCTTGTTCTAGTCACTATGGGCACAGGCTCCAACTGGGTTGGCAATGGCATCATTGCCTACTACCTCTCGCCGGCACTCAAGCTTGTGGGAATTACGTCATCAAGCGCCATTGCTGGCATCAATGGTGGTATGGCAATTTGGTCTCTTCTCTGGGCCTACGCAGGAGCCATGAGTGCAGAGCGCGTCGGTCGCCGCACGCTCTGGATCACGGGAACCGCTGGAATGTGCGCTGCTTACGCTGTTATCACCGGTCTCAGCGGTTCCTTTGCCGAAAACCCCTCCCACAGCGTGGGTATCGCCGTTGTTCCCATGATGTACATCTTCAAGACCTTCTACTGCATTAGTTGGTCACCGCTGCCGTTTGCATATGGCGCTGAGATTCTGCCTTATAATCTGAGACTCAAGGGTCTCAGCATCGAACTCAGTGTTCAAAGTGTTGCGCTGGCTTTTAACCAATGGGTCAACCCTGTGGCCCTTGAAGCCATTGCGTGGAAGTACTACATCGTCTACATTGCCGTCATTGCCATGTATCTGGTACTTATCTTGTTCTTTTTCCCCGAAACTAGAAACATGACCATCGAGGAAGTGTCTATTCTTTTCGACACTGGGCGAAAGGGTGACGCCGCCGCAGCAACTCGCAAGTTCATTAATGATAAGTCGGAGAAGGAAAGAGAAATCCTTGGAGACGATGACGACGTTGAGAAAGGACCGACTATATCTAAGATTGAGCGGATCTAG > 747 NECHADRAFT_51202 NA hypothetical_protein XP_003041180.1 NA MADNKETVSSTPDPVVGLDSDPSKTHASVIDHARSAAQKEQKMTLMQGIKLYPKAVFWSLFISTCIVMEGYDVSLVNNFYAFPQFNRKYGHLTENGDYQVSAAWQAGLSNGANCGSIIGLLINGWASERFGYRFTIMACLVWLSGFITLFFMAQNVQTLLAAEILCGIPWGIFQTICITYASEVCPVALRGYLTTYVNFCWGLGQEIGIGVIHSMIDRDDQWAYRIPYGLQWMWPLPLFIGIWFAPESPWWLVRRGRVQDAKKSLLRLTSLDRETDFDADETVAMMVHTTALEEKVTAGSSYVDCFKGVDLRRTEIVCMCWAMQNLSGNSFSNYSTYFLEQAGLSTRHAYSFALGQYAINMVGVFGAWALMTAGVGRRTLYLYGLCGLFSMLLILGFLGVVPESNRDKASLATGSIMIVWALCYQLSVGTVCYSLVGELSSRRLQMKTVALGRILYNIVSIINAVLVPYMLNPTAWDWGNFAGFFWAGICFLCIVYTFFRLPEPNGRSFAELDVLFEKRISARKFASTEVDVFHEVVEEKVMDQYEKAEERIERADEKA Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003041134 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:1680 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315837).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_predicted_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7ZKN0_NECH7.gb Nectria 302884568 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003041134 NA NA pyrenomycetes sac_fungi 19714214 1680 10 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003041134.1 ATGGCAGACAACAAAGAGACGGTCTCGTCGACGCCTGACCCTGTGGTTGGCCTTGACTCTGATCCAAGCAAGACGCATGCTTCTGTAATTGACCATGCGCGTTCTGCTGCTCAAAAGGAACAGAAGATGACCCTCATGCAGGGCATCAAGCTGTATCCCAAGGCTGTTTTTTGGAGTTTGTTTATTTCTACCTGCATTGTTATGGAAGGCTACGATGTTAGTCTCGTGAACAACTTTTATGCCTTCCCTCAGTTCAACAGAAAGTACGGTCATCTCACCGAGAATGGCGATTACCAAGTGTCTGCCGCATGGCAGGCCGGTCTTAGCAACGGTGCCAACTGTGGTTCAATCATCGGTCTGCTCATCAACGGTTGGGCGTCTGAAAGGTTTGGCTACCGCTTCACCATTATGGCGTGTCTCGTCTGGCTGTCAGGATTCATCACCCTGTTCTTCATGGCGCAGAACGTGCAAACCCTGTTGGCTGCCGAAATCCTCTGTGGTATTCCATGGGGCATTTTCCAAACCATCTGCATTACATATGCCTCCGAAGTGTGTCCTGTTGCCCTTCGAGGATATCTCACGACATATGTCAACTTTTGCTGGGGACTTGGTCAAGAGATCGGTATCGGAGTCATTCATTCCATGATTGACCGAGATGATCAATGGGCTTACAGAATTCCCTATGGCCTCCAATGGATGTGGCCCCTGCCTCTCTTTATCGGTATTTGGTTTGCTCCTGAGTCTCCTTGGTGGCTTGTACGCAGAGGCCGTGTGCAAGATGCCAAAAAGTCCTTGTTGAGACTCACAAGTCTTGATCGAGAGACGGATTTCGATGCAGATGAAACCGTTGCCATGATGGTTCACACCACGGCTCTGGAGGAAAAGGTCACGGCCGGTTCATCCTATGTCGACTGCTTCAAGGGTGTTGACCTTCGCCGCACCGAGATTGTCTGTATGTGCTGGGCGATGCAAAACCTTAGCGGTAACTCGTTCTCCAACTACTCGACCTACTTCTTGGAACAGGCTGGCCTGTCGACTAGACATGCTTACTCCTTTGCCCTTGGTCAATATGCCATCAATATGGTTGGTGTTTTTGGTGCCTGGGCGTTGATGACTGCCGGAGTCGGCCGGAGAACTCTTTACCTGTATGGTCTTTGTGGCCTGTTCTCGATGCTCCTCATCCTTGGCTTCTTGGGTGTTGTGCCCGAATCTAACAGAGATAAGGCTTCATTGGCGACTGGAAGCATCATGATTGTGTGGGCTCTTTGTTACCAGCTGTCTGTTGGTACCGTTTGTTATTCTTTGGTCGGCGAGTTGTCATCGCGACGACTTCAGATGAAGACTGTTGCGCTCGGTCGAATCCTTTACAATATCGTCAGCATCATCAACGCCGTCCTGGTTCCCTATATGCTCAATCCCACTGCTTGGGACTGGGGTAACTTTGCTGGTTTCTTCTGGGCCGGAATTTGCTTCCTCTGCATTGTTTACACCTTCTTCCGTCTGCCTGAGCCCAATGGCCGGTCATTCGCCGAGCTGGATGTGCTGTTTGAGAAGCGTATCAGCGCCAGAAAGTTTGCCTCAACCGAGGTTGATGTGTTCCACGAGGTCGTGGAAGAGAAGGTCATGGACCAGTACGAGAAGGCTGAGGAGAGGATTGAGAGGGCGGATGAGAAAGCTTGA > 748 NECHADRAFT_85688 NA hypothetical_protein XP_003040048.1 NA MPVDSHEVSREFVEIKTSLEEEGGKMGETTWKECLKPVTYRNSIGYYAPQIFQTVGLSGADASLFATGIYGIVKLIFTAISLLFVIDKIGRRWAHVGGGAWMAVMMFILASVLATHPPKEGEGVSSASIAMCVLIYLYAIAYTGSWGPSPWIDASEIFPTHVRSCGVAFGGNSVVNHLNVFGSLCFGMSVFTFFFMKETKVLTLEEIDQLFGLSDMEQFHNDVERRMTKLEGLDPVMKTVTAEEEKGVAKQEEIK Sordariomycetes Nectria_haematococca_mpVI_77-13-4 Nectria_haematococca_mpVI_77-13-4 XM_003040002 NA Coleman,J.J.,_Rounsley,S.D.,_Rodriguez-Carres,M.,_Kuo,A.,_Wasmann,C.C.,_Grimwood,J.,_Schmutz,J.,_Taga,M.,_White,G.J.,_Zhou,S.,_Schwartz,D.C.,_Freitag,M.,_Ma,L.J.,_Danchin,E.G.,_Henrissat,B.,_Coutinho,P.M.,_Nelson,D.R.,_Straney,D.,_Napoli,C.A.,_Barker,B.M.,_Gribskov,M.,_Rep,M.,_Kroken,S.,_Molnar,I.,_Rensing,C.,_Kennell,J.C.,_Zamora,J.,_Farman,M.L.,_Selker,E.U.,_Salamov,A.,_Shapiro,H.,_Pangilinan,J.,_Lindquist,E.,_Lamers,C.,_Grigoriev,I.V.,_Geiser,D.M.,_Covert,S.F.,_Temporini,E._and_Vanetten,H.D. NA 0:768 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315807).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2010 Nectria_haematococca_mpVI_77-13-4_hypothetical_protein,_mRNA. NA Nectriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nectria_haematococca_C7ZPE2_NECH7.gb Nectria 302882274 PLoS_Genet._5_(8),_E1000618_(2009) fungi XM_003040002 NA NA pyrenomycetes sac_fungi 19714214 768 10 mRNA NA NA NA Nectria_haematococca_var._brevicona NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 660122 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Hypocreales,_Nectriaceae,_Nectria,_Nectria_haematococca_complex The_genome_of_Nectria_haematococca:_contribution_of_supernumerary_chromosomes_to_gene_expansion NA XM_003040002.1 ATGCCCGTCGACTCGCACGAGGTGTCTCGCGAGTTTGTTGAGATCAAGACGTCCCTTGAAGAAGAAGGAGGAAAGATGGGAGAGACTACCTGGAAGGAGTGCCTCAAGCCTGTAACTTACCGGAACTCGATCGGATACTATGCTCCCCAGATTTTCCAAACCGTTGGTCTGTCTGGAGCTGATGCTTCTCTGTTCGCTACTGGAATCTATGGCATTGTCAAGTTGATTTTCACCGCCATCTCCCTGCTATTTGTCATTGACAAGATTGGCCGACGGTGGGCACATGTTGGTGGTGGAGCCTGGATGGCCGTGATGATGTTTATCCTGGCTTCAGTTTTGGCAACTCATCCTCCCAAGGAGGGTGAAGGTGTCTCATCTGCGTCCATCGCCATGTGTGTCCTCATTTACCTTTACGCCATTGCATACACGGGCTCATGGGGCCCTAGTCCTTGGATCGATGCCAGCGAGATCTTTCCAACTCACGTCCGCTCTTGTGGTGTGGCTTTTGGAGGCAACTCAGTGGTTAATCACCTTAATGTTTTTGGCAGTCTCTGCTTCGGGATGAGCGTTTTTACCTTTTTCTTTATGAAGGAGACCAAGGTTCTGACACTTGAGGAGATTGACCAGCTCTTTGGACTGTCTGATATGGAGCAGTTCCATAACGATGTTGAGAGGAGAATGACCAAGCTGGAGGGACTTGATCCTGTTATGAAGACTGTGACGGCTGAGGAAGAAAAGGGGGTTGCTAAGCAGGAGGAGATTAAGTAG > 749 NFIA_044510 encoded_by_transcript_NFIA_044510A;_predicted_by_EVM MFS_quinate_transporter,_putative XP_001267529.1 NA MAGGPKKPVNIFRLRNLNEPKEVFNWRLWFAVLSFGLMGAARGVDEGLISGAFNSKDFQRTIHYSQYSEVEQTNIKANVSAMVQIGSVGGALFAFLVCDRIGRIWATRQLCLLWILGIGIFLGANGSLAAIYAGRFIAGLGVGQTVVVGPVYLAEIAPASIRGLCTCVFTGFVYLGIVLAYFTNYGCQVNLGDNTHKRWEVPTSLHIIFAGLIFLLSFLQYESPRFLIKKGKYEHAIRNLARVRHLPEDHEYVVQEITAIEQSHQAELEATMGSGWLGVIKETFCVPKNLYRIYLTVMSQILSQWSGAGSITLYAPDLFKLLGITGSNESLLVTGVFGIVKLVAAITCALFLVDVIGRKRALLIGITLQAIAMIYVAAFLTDVPEMGIVDDFVLPESKQGVSRGAIAMIYVSGFGWALGWNSMQYLLTAELFPLRIRALATSIAMTLHFANQYGNSRAVPNMLLSTDHGGITPKGTFWCFAAVTILGGVWVFLSVPETAGRSLESMDRLFELPWYKIGLYGNKDAEERDQVVSEKMQMAEEMHGTAAHQETVDKSRV bitunicate_ascomycetes Neosartorya_fischeri_NRRL_181 Neosartorya_fischeri_NRRL_181 XM_001267528 NA Nierman,W.C. NA 0:1674 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001509774).COMPLETENESS:_incomplete_on_both_ends. NA 26-MAR-2008 Neosartorya_fischeri_NRRL_181_MFS_quinate_transporter,_putative_(NFIA_044510)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fischeri_A1CV55_NEOFI.gb Neosartorya 119501544 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001267528 NA NA green_and_blue_molds sac_fungi NA 1674 NA mRNA NA NRRL_181 NA Neosartorya_fischeri_var._fischeri NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 331117 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Neosartorya Direct_Submission NA XM_001267528.1 ATGGCAGGCGGTCCAAAGAAACCCGTCAACATCTTCCGGTTGAGAAACCTTAACGAACCCAAAGAAGTCTTCAACTGGAGGCTATGGTTTGCGGTTCTCTCATTCGGCCTCATGGGCGCTGCCCGAGGTGTGGATGAGGGTTTGATCTCGGGCGCTTTCAACTCGAAGGATTTCCAGCGGACGATCCACTACAGCCAATACAGTGAGGTCGAACAGACGAACATCAAGGCGAATGTGTCGGCGATGGTGCAGATCGGTTCTGTCGGTGGTGCTCTCTTCGCGTTCTTGGTTTGTGACCGCATCGGTCGTATCTGGGCCACTCGTCAGTTGTGTCTTCTGTGGATTCTTGGTATTGGCATCTTCTTGGGCGCAAACGGAAGCCTTGCCGCCATCTACGCCGGTCGCTTCATTGCAGGATTGGGTGTTGGACAAACTGTTGTGGTGGGCCCGGTGTATCTCGCTGAGATTGCCCCCGCGTCGATCCGAGGTCTCTGCACCTGTGTGTTTACCGGTTTCGTGTATCTTGGTATCGTCCTGGCCTACTTTACCAACTACGGGTGCCAGGTTAACCTCGGAGACAACACGCACAAGCGATGGGAAGTGCCAACCAGTCTGCACATCATCTTCGCCGGTCTGATCTTCCTCCTCTCCTTCCTGCAATACGAGTCCCCTCGCTTTCTGATCAAAAAGGGCAAATACGAACACGCAATCCGCAATCTAGCGCGCGTGCGACACCTCCCTGAAGACCACGAGTACGTCGTGCAGGAGATCACGGCCATCGAGCAGTCCCACCAGGCCGAACTCGAGGCGACCATGGGCTCTGGCTGGCTCGGCGTCATCAAGGAGACCTTTTGCGTCCCGAAGAACCTGTACCGCATCTACCTGACCGTCATGTCGCAGATCCTCTCGCAATGGTCCGGCGCCGGCTCCATCACCCTCTACGCCCCAGATCTCTTCAAGCTGCTCGGCATCACCGGCTCCAACGAGAGCCTCCTCGTGACCGGTGTGTTCGGTATCGTCAAGCTCGTCGCAGCCATCACGTGCGCCCTGTTCCTGGTCGACGTGATCGGCCGCAAACGCGCCCTGCTCATCGGTATCACCCTGCAGGCCATCGCCATGATCTACGTCGCCGCCTTCCTGACCGACGTCCCGGAGATGGGCATCGTCGACGACTTTGTCCTGCCGGAGTCAAAGCAGGGCGTCAGCCGCGGCGCCATCGCCATGATTTATGTCTCCGGGTTCGGCTGGGCGCTCGGCTGGAACTCGATGCAGTACCTGCTCACCGCGGAGCTCTTCCCGCTGCGCATCCGTGCCCTGGCGACCTCCATCGCCATGACGCTACACTTTGCCAACCAGTACGGCAACTCGCGCGCCGTCCCAAACATGTTGCTGTCCACCGACCACGGCGGCATCACCCCCAAGGGCACGTTCTGGTGCTTTGCGGCGGTGACCATCCTCGGTGGAGTGTGGGTGTTTCTCAGTGTTCCTGAGACAGCCGGGCGGTCGCTCGAGAGCATGGATCGCCTGTTCGAGCTGCCGTGGTACAAGATCGGTCTGTACGGAAACAAGGACGCCGAAGAGCGGGATCAGGTGGTGTCGGAGAAGATGCAGATGGCGGAGGAGATGCACGGGACTGCGGCGCACCAGGAGACGGTCGACAAGTCGAGGGTGTAA > 750 NFIA_009210 encoded_by_transcript_NFIA_009210A;_predicted_by_EVM MFS_quinate_transporter,_putative XP_001264139.1 NA MRRAIDWSRWTTSPYYAIVILIIACGSIPKGYDEGGFSASVNLESFVNDFHLAASERTNDKTELANRRANITSFNVLGAAFGALLALDLNDRLGRLRSWRLACLIWAAGLFVQVFSSGIYGLILAARLCSGLGAGILTVSTPLYLSEIAPARTRGLVVSIYMVILLTVLALGFFINYAASLHMAPTRTQYRLVQSIPLIPVGIAFFASFIAPETPRYLVSRHRHDEGRSVLARLRGREVSDPAIEDEFNGIDAQVRTKAMDLASVTHWEAFKETQLNPNYRQRFWLLIAMQTISQWTGGNGITYYVATIFQYAGIDGNARSLVSSGAYGIVKLVFTMAFTWGLIDYLGRRRCALAGLSLQLAAHIYMGAYMGLQPGSSTNRSASNAAIASVFVYAVGWSIGLCTIPYLYGTEIFPTRIRNVSYAISMSLHWFFQFAVVRVTPNMFVSLDVWGAYVFWAIICFSGLVILGIWMPETKGVPIERMGDLFEGPWYLRWRAKPRPVSSFLPSPAGMDAGVPPGEKRPGWANASV bitunicate_ascomycetes Neosartorya_fischeri_NRRL_181 Neosartorya_fischeri_NRRL_181 XM_001264138 NA Nierman,W.C. NA 0:1593 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001509770).COMPLETENESS:_incomplete_on_both_ends. NA 26-MAR-2008 Neosartorya_fischeri_NRRL_181_MFS_quinate_transporter,_putative_(NFIA_009210)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fischeri_A1D1E9_NEOFI.gb Neosartorya 119494486 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001264138 NA NA green_and_blue_molds sac_fungi NA 1593 NA mRNA NA NRRL_181 NA Neosartorya_fischeri_var._fischeri NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 331117 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Neosartorya Direct_Submission NA XM_001264138.1 ATGAGGCGGGCGATTGACTGGTCTCGGTGGACCACCAGTCCATATTACGCCATCGTCATTCTGATTATTGCCTGCGGGAGTATTCCGAAAGGTTACGATGAGGGTGGCTTTAGCGCCAGTGTCAACTTGGAATCGTTTGTGAACGATTTCCATCTCGCAGCTTCTGAACGGACGAATGACAAGACCGAGCTGGCCAACCGCAGAGCCAACATCACCTCGTTCAACGTTTTGGGTGCTGCGTTTGGCGCCCTGCTCGCATTGGACTTGAACGATCGTCTGGGACGCCTGCGCTCGTGGCGATTAGCTTGTCTGATTTGGGCGGCCGGTCTCTTCGTTCAGGTTTTCTCCTCTGGCATATACGGTTTGATTCTTGCGGCGAGGCTATGCAGTGGACTAGGGGCGGGAATACTCACCGTTAGCACGCCGTTGTATTTATCCGAAATTGCCCCCGCAAGAACTAGAGGTTTGGTGGTCAGTATCTACATGGTTATATTGTTGACTGTGTTGGCATTGGGTTTCTTCATCAATTATGCCGCCAGTCTGCATATGGCCCCAACGCGGACTCAGTACCGTCTCGTGCAATCCATTCCACTAATACCAGTGGGGATTGCGTTCTTTGCGTCCTTCATTGCACCCGAAACGCCTCGCTACTTGGTCTCCAGGCACCGGCATGACGAAGGACGATCCGTCCTCGCTCGTCTGCGCGGCAGAGAAGTCTCCGACCCAGCGATCGAAGACGAATTCAACGGCATCGATGCGCAAGTGCGCACCAAGGCGATGGACCTGGCGTCCGTAACCCACTGGGAAGCTTTCAAAGAGACCCAACTCAACCCCAACTACCGGCAGCGATTCTGGCTGCTGATCGCCATGCAAACCATCTCCCAGTGGACCGGCGGCAACGGCATCACCTACTACGTCGCCACCATCTTCCAGTACGCCGGAATCGACGGCAACGCGCGCTCGCTCGTCTCCTCAGGCGCCTACGGGATCGTCAAGCTGGTCTTCACCATGGCCTTCACCTGGGGTCTAATCGACTATCTCGGCCGCCGGCGGTGCGCCCTCGCCGGCCTCAGCCTCCAGCTCGCCGCCCACATCTATATGGGCGCATACATGGGCCTGCAGCCGGGGTCGAGCACCAACCGCTCCGCCTCCAACGCCGCCATCGCCTCTGTCTTCGTCTACGCCGTCGGCTGGTCCATCGGCCTCTGCACCATTCCCTACCTCTACGGCACGGAGATCTTCCCCACGCGCATCCGCAACGTCAGCTACGCGATCAGCATGTCGCTGCACTGGTTCTTCCAGTTTGCTGTCGTCCGCGTCACTCCGAACATGTTCGTCTCGCTCGATGTGTGGGGCGCCTACGTCTTTTGGGCGATCATTTGCTTCTCGGGGCTCGTCATCTTGGGCATCTGGATGCCTGAGACGAAGGGCGTGCCCATTGAGCGGATGGGTGATCTCTTCGAGGGACCGTGGTACTTGCGCTGGCGAGCGAAGCCAAGACCGGTCAGTTCCTTTTTACCTTCTCCGGCCGGAATGGACGCGGGCGTTCCTCCTGGTGAGAAGAGGCCGGGCTGGGCGAACGCATCTGTCTGA > 751 NFIA_064580 encoded_by_transcript_NFIA_064580A;_predicted_by_EVM hexose_carrier_protein XP_001263191.1 NA MAKIKMYSRGLGLRMAILITCQIAFVLFGYNQGVFSGIINNEDFLNIVNHPRAGMLGFLVSIYNLGCFFGTFIAFMTTDRLGFQKSMWFSMVYVVVGGTVQTCSYSLTQLLISRFVNGIGTGIMSTLVPVYQAELCEARKRGKFVCSLPLAVGVGIVLAYWFDYGMTYVTGSISWRLPIACQEIFAVLVVILVAGLPESPRWLYRKGRNEEALQVLCEVYDRAPDHPKVLAESEGILQALELESARGEYRWSQIFLKRDDLQTGRRVLMAYGLQFINQMGGTNIIVVSDPDARLQAVQADKKPDNVGLTAKTSSLVGGVIQIMFVIGSLYPTLYADRLGRRNPMMWGSFGLGFCMLMLAILFSFEGTSQAKPTATAAVAFFFLFMLIFGASTNCIPWPYGPELLPLHARTKGQSIGVSANWLWNFFVAMITPILLEKLRWKTYLIFMCLNFSFIPLIYFFYPETANLTLEEIDGLFLRDSLKAHHTDEESQSKGHSEVIVEKIG bitunicate_ascomycetes Neosartorya_fischeri_NRRL_181 Neosartorya_fischeri_NRRL_181 XM_001263190 NA Nierman,W.C. NA 0:1515 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001509768).COMPLETENESS:_incomplete_on_both_ends. NA 26-MAR-2008 Neosartorya_fischeri_NRRL_181_hexose_carrier_protein_(NFIA_064580)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fischeri_A1D6F0_NEOFI.gb Neosartorya 119491137 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001263190 NA NA green_and_blue_molds sac_fungi NA 1515 NA mRNA NA NRRL_181 NA Neosartorya_fischeri_var._fischeri NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 331117 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Neosartorya Direct_Submission NA XM_001263190.1 ATGGCTAAGATCAAGATGTATAGTCGAGGGCTAGGCCTCCGGATGGCGATTCTGATCACCTGTCAGATTGCATTTGTCCTATTTGGCTACAATCAGGGTGTCTTCTCCGGAATCATCAACAATGAAGACTTTCTGAACATCGTCAACCATCCCCGCGCGGGCATGCTCGGATTCCTAGTGTCTATCTACAATCTGGGCTGCTTCTTCGGTACTTTTATTGCCTTCATGACAACAGACAGGCTTGGGTTTCAAAAGTCTATGTGGTTTTCGATGGTCTATGTAGTGGTCGGTGGTACGGTCCAGACATGCTCATACTCCCTAACGCAGTTACTCATATCCCGCTTCGTCAACGGTATCGGCACTGGTATTATGTCAACATTAGTGCCTGTCTACCAAGCGGAGCTATGTGAGGCGCGGAAACGGGGAAAATTTGTGTGCAGCCTACCGCTTGCCGTTGGGGTTGGGATTGTCCTCGCCTATTGGTTTGACTATGGTATGACCTATGTTACAGGGTCAATCAGTTGGCGATTACCTATCGCTTGTCAGGAGATATTCGCCGTGCTTGTAGTCATTTTGGTCGCTGGGCTCCCAGAAAGTCCCCGGTGGTTATACAGGAAAGGTCGTAACGAGGAAGCACTGCAGGTTTTGTGTGAGGTGTATGACCGGGCACCTGATCACCCGAAGGTCCTTGCCGAGTCTGAAGGAATTTTACAAGCACTCGAGTTGGAAAGCGCGCGTGGAGAATACAGATGGTCTCAAATCTTCCTCAAGAGAGATGACTTGCAAACTGGTCGACGGGTCCTTATGGCTTATGGGCTCCAGTTCATCAACCAAATGGGCGGTACCAATATCATCGTTGTAAGTGACCCGGATGCACGTTTGCAGGCTGTTCAAGCTGACAAGAAGCCAGACAATGTTGGCCTTACAGCAAAGACGAGCTCGCTCGTTGGTGGAGTGATTCAGATCATGTTTGTCATCGGTTCATTGTATCCTACACTGTATGCAGATCGCCTTGGACGTCGAAACCCCATGATGTGGGGATCATTCGGTCTAGGCTTCTGCATGTTGATGCTTGCCATCCTGTTTTCGTTTGAAGGAACCTCCCAGGCAAAGCCCACGGCGACGGCGGCCGTCGCGTTCTTCTTCCTGTTCATGCTCATCTTTGGAGCATCGACCAATTGCATCCCATGGCCTTACGGACCCGAACTCCTTCCTCTACATGCGCGCACCAAGGGACAATCCATCGGAGTCTCCGCAAACTGGCTCTGGAACTTCTTCGTGGCCATGATCACTCCCATCCTCCTTGAGAAGCTGCGCTGGAAGACCTATCTCATCTTCATGTGTCTTAACTTCTCCTTCATACCCCTCATCTACTTCTTCTACCCCGAGACCGCCAATCTGACCCTTGAAGAAATCGACGGTCTATTCCTCAGGGATTCGCTCAAGGCCCACCACACCGACGAGGAAAGCCAGTCGAAGGGTCACTCCGAGGTCATCGTCGAGAAGATCGGCTAG > 752 NFIA_113680 encoded_by_transcript_NFIA_113680A;_predicted_by_EVM MFS_monosaccharide_transporter,_putative XP_001262734.1 NA MGVETETHHGESITPAPQPHYSSSDSVAAEKPLDLGVDTPIPRLTLRSAIMGLFVSMGGLLFGYDTGQISGFQEMSNYLHRYGEYSNGKYHFSHVRSGLIVGLLSIGTLIGALVGAPIADRLGRKWSITLWNIILIVGIIVQITAPTGHWWQMVVGRWVTGLGVGGCSLLVPMYQGESAPRHVRGAMISCYQLFVTLGIFLAYLINLGTESMDGTAQWRITLGLTVVFALVLGGGMAFFPESPRFEYRHGKIDSARRTMSKLYGVPENHRVIVQELYEIQKQLDAESGVQVWHEFLTGPRMLYRVALGMLLQCLQQLTGANYFFYYGTTIFQGAGLSNSFVTSVILGAVNFVTTFGGLYVVENYGRRKSLIFGAGFMFCMFMIFASIGHFMLDVNDPTNTPEVGKGMIVLACFFIAAFAMTWGPMVWAIVAELFPSKYRAKGMALATASNWLWNFLLSFFTPFITGAIDFAYGYVFAGCLLVAAFVVYFCVIEGKGRTLEEIDWMYVNHVAPWQSSKFEIPQTEWEEGPGAQSRKEEQAFHAEVA bitunicate_ascomycetes Neosartorya_fischeri_NRRL_181 Neosartorya_fischeri_NRRL_181 XM_001262733 NA Nierman,W.C. NA 0:1638 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001509766).COMPLETENESS:_incomplete_on_both_ends. NA 26-MAR-2008 Neosartorya_fischeri_NRRL_181_MFS_monosaccharide_transporter,_putative_(NFIA_113680)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fischeri_A1D8X6_NEOFI.gb Neosartorya 119488567 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001262733 NA NA green_and_blue_molds sac_fungi NA 1638 NA mRNA NA NRRL_181 NA Neosartorya_fischeri_var._fischeri NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 331117 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Neosartorya Direct_Submission NA XM_001262733.1 ATGGGTGTCGAGACAGAAACCCACCATGGGGAATCCATCACCCCCGCCCCCCAGCCTCACTACTCCAGCTCCGACTCGGTGGCTGCTGAGAAGCCACTCGATCTCGGGGTCGACACTCCCATCCCCCGGCTGACCCTTCGGTCCGCCATCATGGGACTGTTCGTCTCCATGGGCGGTCTGCTGTTCGGATACGACACTGGTCAGATCTCCGGATTCCAGGAGATGAGCAACTACCTGCACCGGTATGGTGAATACAGCAACGGCAAGTACCACTTCAGCCATGTTCGCTCCGGTCTCATCGTCGGTCTGCTGTCCATCGGTACCCTGATCGGTGCGCTGGTCGGGGCTCCCATCGCCGACAGACTTGGCCGCAAGTGGTCCATCACCTTGTGGAACATCATCTTGATCGTTGGTATCATTGTTCAAATTACCGCTCCTACAGGTCACTGGTGGCAGATGGTCGTCGGCCGTTGGGTTACCGGTCTGGGTGTCGGTGGCTGCTCGCTGCTTGTTCCCATGTACCAGGGTGAGAGTGCACCGCGTCACGTCCGTGGTGCCATGATCAGCTGCTACCAGCTGTTCGTGACGCTGGGGATCTTCCTCGCCTACCTGATCAACCTGGGAACCGAGAGCATGGACGGCACCGCCCAGTGGCGCATCACCCTAGGTCTGACCGTCGTTTTCGCCTTGGTCTTGGGCGGCGGCATGGCCTTCTTCCCCGAATCCCCTCGCTTCGAGTACCGCCACGGCAAGATCGACAGCGCCCGGCGCACCATGTCCAAGCTGTACGGTGTGCCCGAGAACCACCGCGTGATCGTCCAGGAACTCTACGAGATCCAGAAGCAGCTCGACGCCGAGTCCGGAGTGCAGGTGTGGCACGAGTTTTTGACCGGCCCGCGCATGCTCTACCGTGTCGCCCTCGGTATGCTCCTGCAGTGCCTGCAGCAGCTCACCGGCGCCAACTACTTCTTCTACTACGGCACCACCATCTTCCAAGGCGCCGGTCTCTCCAACAGCTTCGTCACCTCCGTCATCCTCGGCGCCGTCAACTTCGTCACCACCTTTGGCGGTCTGTACGTGGTCGAGAATTATGGCCGCCGCAAGTCCCTCATCTTCGGCGCCGGCTTCATGTTCTGCATGTTCATGATCTTCGCGTCCATCGGCCACTTTATGCTTGATGTCAACGACCCCACCAACACCCCCGAGGTCGGCAAGGGCATGATCGTCCTCGCCTGCTTCTTCATTGCTGCATTCGCAATGACCTGGGGTCCCATGGTCTGGGCCATCGTCGCCGAGCTCTTCCCCTCCAAGTACCGCGCAAAGGGCATGGCCCTAGCCACCGCCTCCAACTGGCTCTGGAACTTTTTGCTGAGCTTCTTCACCCCCTTCATCACCGGCGCCATCGACTTCGCTTATGGGTATGTCTTCGCGGGCTGTCTGCTGGTCGCCGCCTTCGTCGTATACTTCTGCGTTATTGAAGGCAAGGGCCGCACACTCGAGGAGATCGACTGGATGTACGTGAACCATGTGGCGCCGTGGCAGAGCAGCAAGTTTGAGATTCCGCAGACTGAGTGGGAGGAGGGACCTGGTGCTCAAAGCCGGAAGGAGGAGCAGGCTTTCCATGCGGAGGTTGCCTAG > 753 NFIA_094640 encoded_by_transcript_NFIA_094640A;_predicted_by_EVM hexose_carrier_protein XP_001261741.1 NA MASESPKYLGLSGKALHWAQVALIGAPAFIVFGYNQAGVGPLATLQSWVETFPQIDTINTTGSLEAHNSTSKGAVIASFQIGALIGALSCTLISDRLGRRKTIFLGSILAIIGEVLQVASYGLVQFVIGRIILGMGVGQYSVAVPVWQSECSSAKNRGQHVIIDGIFMCLGYSLCNWIDFGLSRIPESTTQWRVPLALSLLPALVILLSVFLLPESPRWLVQVNRTEEATHSLASLKGLSVNDEAIRAEISGIESSLELTAQSKGSLMEMFDPNDQERLFYRFCLCIILQFFQQMCGGNLISVYASTIFEQNLGLSASLSKILAACALTWKFFCCFIAFFTIDRLGRRVVFMISGTGMAFCMIALAITNSRGTDNKGASIASVVFIFLFNLFYPIGFLGGNFLYCTEVAPVRLRVAMSSISTANHWLWNFVVVMVTPIALDTIGYQYYVMYAVLSACIPLLVYFFYPETMNRNLELLNHVFRDASSPWEIVSMAKHLPQGEVTEADLMEMNKKGDGCSVEMAEKV bitunicate_ascomycetes Neosartorya_fischeri_NRRL_181 Neosartorya_fischeri_NRRL_181 XM_001261740 NA Nierman,W.C. NA 0:1578 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001509764).COMPLETENESS:_incomplete_on_both_ends. NA 26-MAR-2008 Neosartorya_fischeri_NRRL_181_hexose_carrier_protein_(NFIA_094640)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fischeri_A1DAF4_NEOFI.gb Neosartorya 119483675 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001261740 NA NA green_and_blue_molds sac_fungi NA 1578 NA mRNA NA NRRL_181 NA Neosartorya_fischeri_var._fischeri NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 331117 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Neosartorya Direct_Submission NA XM_001261740.1 ATGGCGTCCGAATCCCCCAAATACCTCGGGCTCTCTGGAAAAGCCCTGCACTGGGCCCAGGTGGCTCTGATAGGTGCCCCTGCCTTCATTGTCTTTGGATACAACCAAGCTGGTGTCGGTCCCCTGGCGACTCTCCAGAGTTGGGTCGAGACCTTCCCTCAGATCGACACGATTAACACGACCGGGTCCCTCGAAGCACACAATTCCACCAGCAAGGGTGCTGTCATTGCCTCGTTCCAGATCGGAGCCCTCATCGGGGCTCTGTCTTGCACACTGATCTCGGACAGACTGGGTCGCCGGAAGACCATATTCCTCGGTTCTATCCTCGCCATCATTGGAGAGGTCCTGCAGGTGGCATCCTATGGATTGGTGCAATTCGTTATCGGCCGTATTATACTAGGCATGGGCGTTGGCCAATACAGTGTGGCTGTACCGGTATGGCAGTCGGAATGTTCGTCGGCAAAGAACAGAGGACAACATGTCATCATCGATGGTATATTCATGTGTCTTGGTTACTCACTGTGCAACTGGATCGATTTCGGTCTGAGTCGTATCCCCGAGAGCACGACGCAATGGCGAGTCCCGCTTGCCCTGTCGCTGCTCCCTGCCCTTGTCATCCTTCTTTCGGTCTTTTTGCTCCCGGAATCACCGCGATGGCTGGTCCAGGTCAACCGCACCGAGGAAGCAACCCACTCGCTGGCATCCCTAAAGGGACTGTCTGTCAACGACGAGGCAATCCGGGCCGAAATTTCCGGTATTGAATCATCCCTTGAGTTGACCGCGCAATCCAAAGGCTCTTTGATGGAGATGTTCGACCCGAATGACCAGGAGCGACTATTCTACCGCTTCTGTCTCTGTATTATCCTGCAATTCTTCCAGCAGATGTGCGGTGGTAACCTGATCTCCGTCTACGCCTCGACGATATTCGAGCAGAACCTCGGCCTCAGCGCCAGCCTGTCCAAGATCCTGGCCGCCTGCGCCCTAACATGGAAATTCTTCTGCTGCTTCATCGCCTTCTTTACCATCGACCGCCTCGGCCGTCGAGTCGTCTTCATGATCAGCGGCACAGGCATGGCCTTTTGCATGATCGCTCTGGCAATCACCAACAGCCGCGGCACAGATAACAAGGGCGCGTCCATCGCCTCCGTCGTCTTTATCTTCCTTTTCAATCTCTTCTACCCGATCGGCTTCCTCGGCGGTAACTTCCTCTATTGTACAGAAGTGGCCCCCGTCCGACTGCGCGTGGCCATGTCGTCCATCTCGACAGCGAACCACTGGCTGTGGAACTTTGTCGTCGTGATGGTCACGCCCATCGCACTGGATACTATCGGGTACCAGTACTATGTCATGTATGCCGTGCTCTCGGCGTGCATCCCCTTGCTGGTGTACTTCTTCTACCCCGAGACTATGAACCGCAACCTGGAGTTGCTGAACCATGTTTTCAGGGATGCGTCGTCCCCCTGGGAAATTGTTTCTATGGCGAAGCATCTGCCTCAGGGTGAGGTCACCGAGGCAGACCTGATGGAGATGAACAAGAAGGGCGATGGGTGCTCTGTCGAGATGGCGGAGAAGGTCTAG > 754 NFIA_026220 encoded_by_transcript_NFIA_026220A;_predicted_by_EVM sugar_transporter_(hexose_transporter XP_001261445.1 NA MTPQDRQDRQGEDNFEGLTLKDVTPKRPPFYRDWTLLKLNTLLLCALLTQIASGYDSSMLNGMQALPQWNKYFGKPTGTRLGAMSFGPTGGTLISVLISSQLCERFGRRYPICGGSLIIILGSIIQAAAVNYGMFVVSRFFVGFGLGIVATAAPPLLTEVAYPSQRGKLVSFYLTTWSLGSLIAAWITYGTFKMTDSSWSWRIPSLLQCFFSLIQAVLSLFAPESPRWLIYNGRREEALAMLAKYHADGDASSRLVRFEMAEITATLEMEKMQRASRWTEWVATRGNKHRLFLALYIPAMLQWAGNGLTSYYLSKVLNTINMTNPHTQLIINACLSVWSFLTAAFFATLVDRAGRRRLFLCGMGGMGVSYVIWTVCSALNEEHNFKNKGYAAGVLVMIFMFSAAYHACSPVAPTYIMEVVPYSLRAKASMMYQLTGNLAGIYNSFANPVAMDAISWRYYIVWCCVICVHFVLIFFFFPETKGKGLEEVAEIFDGPDALSGVNAMRQMGLDVHADKAVAVKGGGANAHVERVEA bitunicate_ascomycetes Neosartorya_fischeri_NRRL_181 Neosartorya_fischeri_NRRL_181 XM_001261444 NA Nierman,W.C. NA 0:1602 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001509763).COMPLETENESS:_incomplete_on_both_ends. NA 26-MAR-2008 Neosartorya_fischeri_NRRL_181_sugar_transporter_(hexose_transporter_(NFIA_026220)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fischeri_A1DCI8_NEOFI.gb Neosartorya 119482833 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001261444 NA NA green_and_blue_molds sac_fungi NA 1602 NA mRNA NA NRRL_181 NA Neosartorya_fischeri_var._fischeri NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 331117 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Neosartorya Direct_Submission NA XM_001261444.1 ATGACTCCCCAAGATCGACAGGATAGACAAGGAGAGGACAACTTTGAAGGCCTCACTCTCAAAGATGTCACTCCCAAACGCCCTCCCTTCTACAGGGATTGGACCCTCCTCAAACTCAACACCCTCCTGCTGTGTGCCCTGCTCACGCAAATCGCCTCCGGATACGACAGCAGCATGCTCAATGGCATGCAGGCCCTGCCCCAATGGAACAAATACTTTGGCAAACCAACAGGCACACGTCTCGGCGCCATGTCCTTTGGTCCAACCGGTGGCACGCTGATCTCCGTGCTCATCTCCTCGCAGCTCTGTGAGCGCTTCGGCCGCCGATACCCCATCTGCGGTGGCTCGCTCATCATCATCCTGGGCTCGATCATCCAAGCCGCAGCCGTCAACTACGGCATGTTCGTGGTCTCGCGATTCTTCGTCGGCTTCGGGCTGGGCATCGTCGCTACAGCCGCCCCGCCTCTCCTGACCGAAGTCGCCTACCCCTCCCAGCGAGGCAAGCTCGTCTCCTTCTATCTAACCACCTGGTCACTGGGCTCCCTCATCGCCGCCTGGATCACCTACGGCACCTTCAAAATGACCGACTCCAGCTGGAGCTGGCGCATCCCCAGCCTCCTACAATGCTTCTTCTCCCTCATCCAAGCCGTGCTCAGCCTCTTCGCCCCGGAATCCCCCCGCTGGCTCATCTACAACGGCCGCCGCGAAGAAGCCCTTGCCATGCTGGCCAAATACCACGCCGACGGGGACGCCTCCTCCCGCCTCGTCCGCTTCGAAATGGCCGAAATCACCGCCACGCTGGAAATGGAGAAGATGCAGCGCGCCTCCCGCTGGACCGAGTGGGTGGCTACCCGGGGGAACAAGCACCGCCTGTTTTTGGCGCTCTATATCCCTGCAATGCTACAGTGGGCCGGCAACGGGCTTACCTCGTACTACCTCTCCAAAGTCCTCAACACCATCAACATGACGAACCCACACACCCAGCTCATCATCAACGCCTGCCTATCCGTCTGGTCGTTCCTGACGGCTGCCTTCTTCGCGACGCTAGTCGACCGCGCAGGTCGCCGCAGGCTCTTCCTCTGCGGGATGGGCGGGATGGGCGTCTCCTACGTCATCTGGACTGTCTGCTCGGCGCTGAACGAAGAACACAACTTCAAGAATAAGGGATATGCGGCGGGCGTGCTAGTCATGATCTTCATGTTCAGCGCAGCGTACCATGCGTGTTCGCCCGTCGCGCCGACGTACATCATGGAAGTCGTGCCGTACTCGCTGCGCGCGAAGGCGAGCATGATGTACCAGCTGACAGGCAACCTAGCGGGAATCTACAACTCGTTTGCGAACCCCGTGGCGATGGATGCGATTTCGTGGCGGTATTATATCGTCTGGTGCTGTGTGATTTGCGTGCACTTTGTGTTGATCTTTTTCTTCTTCCCGGAGACCAAGGGCAAGGGGTTGGAGGAGGTGGCCGAGATTTTCGACGGGCCGGATGCGCTTTCTGGGGTTAATGCTATGAGACAGATGGGGTTGGATGTGCATGCTGACAAGGCGGTTGCTGTTAAGGGTGGAGGTGCAAATGCGCATGTTGAGCGGGTTGAGGCTTAG > 755 NFIA_081300 encoded_by_transcript_NFIA_081300A;_predicted_by_EVM MFS_sugar_transporter,_putative XP_001260083.1 NA MGKRLGLLRAIYLVSASCMGSFAFAFDTGVISGVLTLESFQKDFRYTQAQKTTVNSNAVSILQAGAFFGCFFTTPVASRLGRRSGLIISSLVFTLGTILQVINAHTLGTFYAGRVIAGIGIGAATVLIPMYAAEMSPKEFRGRLGACFQWFFACGVMVAYWVTYAVSKDQPSATKQWQIALGLQLLPSTLLLAGMCTVKESARWLAAKGRTDAAWDSLRWVRGGEETAELRQEFDEILTGLEEEARVRENWTWRELLLPANRYRIFIAVTIQLCAQLTGNTSLAYYATQIFAAVGAGTSAKLVTGFFGVVKVVGVSVFQLFVMDRIGRRVPFMVGAGAMGSFMLIIACVLATHPTKASTGAAETGATHAGIAMIIMTYAEAFSFNMSWGPLPWLYVGEIFSSRTREVGVTVGAASQWLFNFMMSQVTPHAIENIGWRMFLMFAIFNYSIIGYSWFFLRETSLHSLEEMQNVFGGGPREKTTDDEAEPSVKTA bitunicate_ascomycetes Neosartorya_fischeri_NRRL_181 Neosartorya_fischeri_NRRL_181 XM_001260082 NA Nierman,W.C. NA 0:1479 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001509762).COMPLETENESS:_incomplete_on_both_ends. NA 26-MAR-2008 Neosartorya_fischeri_NRRL_181_MFS_sugar_transporter,_putative_(NFIA_081300)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fischeri_A1DFM9_NEOFI.gb Neosartorya 119480108 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001260082 NA NA green_and_blue_molds sac_fungi NA 1479 NA mRNA NA NRRL_181 NA Neosartorya_fischeri_var._fischeri NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 331117 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Neosartorya Direct_Submission NA XM_001260082.1 ATGGGCAAAAGACTTGGCCTGCTGCGGGCCATTTATCTGGTGTCGGCCAGTTGCATGGGCTCGTTTGCTTTTGCGTTTGACACTGGGGTGATCAGCGGCGTTCTCACGCTGGAATCCTTCCAGAAGGACTTTCGATATACTCAAGCGCAGAAAACCACCGTCAACTCAAATGCTGTGTCTATTCTTCAGGCCGGCGCGTTTTTCGGATGTTTCTTCACCACACCGGTAGCCTCGCGGCTAGGTCGCCGGAGCGGGCTGATCATCAGCTCGCTGGTGTTCACGCTCGGCACGATCCTGCAGGTCATCAACGCACACACGCTAGGCACCTTTTACGCAGGCCGCGTGATTGCCGGGATTGGCATCGGGGCCGCGACGGTGCTGATCCCGATGTACGCGGCGGAGATGTCGCCCAAGGAGTTCCGCGGGCGGCTGGGGGCGTGTTTCCAGTGGTTCTTTGCGTGCGGCGTGATGGTCGCGTACTGGGTGACGTATGCGGTGTCCAAGGACCAGCCGTCCGCCACAAAGCAGTGGCAGATCGCGCTGGGGCTGCAGCTGCTGCCGTCGACGCTGCTGCTGGCGGGCATGTGCACGGTCAAGGAGAGCGCGCGGTGGCTGGCGGCCAAGGGACGGACCGACGCCGCGTGGGATTCGCTGCGATGGGTGCGCGGCGGCGAGGAGACGGCGGAACTGCGGCAGGAGTTTGACGAGATCCTCACGGGGCTGGAGGAGGAGGCGCGCGTGCGGGAGAACTGGACGTGGCGCGAGCTGCTGCTGCCGGCGAATCGGTACCGGATCTTCATTGCCGTCACGATCCAGCTGTGTGCGCAGCTGACGGGCAACACCTCGCTGGCGTACTATGCGACACAGATCTTCGCGGCGGTCGGCGCGGGCACCTCGGCCAAGCTGGTGACGGGATTCTTCGGCGTGGTCAAGGTGGTCGGGGTCAGTGTCTTCCAGCTGTTTGTCATGGATCGGATCGGGCGAAGAGTTCCGTTCATGGTTGGCGCGGGCGCAATGGGCTCCTTTATGCTCATCATCGCGTGTGTGCTGGCGACGCATCCAACGAAAGCGTCCACGGGGGCTGCTGAGACTGGAGCGACGCACGCGGGCATCGCCATGATCATCATGACTTATGCCGAGGCGTTTAGCTTCAACATGTCCTGGGGGCCACTGCCATGGCTGTACGTGGGAGAAATCTTCTCGAGCCGCACGCGCGAGGTGGGAGTGACGGTGGGGGCGGCGTCGCAGTGGCTGTTCAACTTTATGATGTCGCAGGTGACGCCGCACGCAATCGAGAATATTGGATGGCGGATGTTCCTGATGTTTGCCATTTTCAACTATTCTATTATCGGGTATTCGTGGTTCTTTTTGCGGGAGACATCCCTCCATTCTCTGGAAGAAATGCAAAATGTGTTTGGGGGAGGACCTCGGGAAAAGACCACCGACGACGAGGCAGAACCGTCAGTCAAGACAGCTTGA > 756 NFIA_005960 encoded_by_transcript_NFIA_005960A;_predicted_by_EVM sugar_transporter XP_001259129.1 NA MYILVDEYKQTGQATERVLDEYFPPFAFPFCHLLWEALNLTYSSLENPLARIPKDRLLREVEEYAQLYDLNDILPELKKGALAAQRPGEFDDIEELTPEERQFLREEVTHRWKHPWGLYYTVVLNSIAAAIQGWDQTGSNGANLTFAEQFGIPQDGCLTQAECTRNQWIVGVINAMPYITIALFAGWISDPLNHWLGRKAVIAIAAVFSLVAPIACAFTQNWHQLLGCRILLGIGMGLKEVTVPVFSAENVPTSIRGGLVMSWQVWTAFGIFLGTCANLAVVNTGRIAWRLQLGSAFIPAVPLLLGIWFCPESPRWLLSKENPGKAYESLLRLRNSPLQAARDLYYIHAQIKMEARLLRESEFTKGGNTLARALELFTVPRIRRATQASGIVMIAQQMCGINIIAFYSSTIFEQAGATNIQALLASFGFGLVNFLFAWPAVWTIDTFGRRWLLLATFPNMCWTLLAAGFCFWIPASSSAHLGLIALFIYLFNIFYSPGEGPVPFTYSAEVFPLTHREIGMAWAVATNNFWAAVLSLTFPYMLRDFKPQGAFGFYAGLNIVALLLIFFFLPETKQRSLEELDRVFSISTRAHAKYQLSEVLPWWIRRYLFGRKDAVVRDLYGHLSPDPVLILEKPEKEEHLESV bitunicate_ascomycetes Neosartorya_fischeri_NRRL_181 Neosartorya_fischeri_NRRL_181 XM_001259128 NA Nierman,W.C. NA 0:1932 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001509761).COMPLETENESS:_incomplete_on_both_ends. NA 26-MAR-2008 Neosartorya_fischeri_NRRL_181_sugar_transporter_(NFIA_005960)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fischeri_A1DKJ3_NEOFI.gb Neosartorya 119474506 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001259128 NA NA green_and_blue_molds sac_fungi NA 1932 NA mRNA NA NRRL_181 NA Neosartorya_fischeri_var._fischeri NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 331117 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Neosartorya Direct_Submission NA XM_001259128.1 ATGTATATCCTGGTTGATGAATATAAGCAAACTGGCCAGGCAACCGAGCGGGTCCTCGATGAGTACTTCCCCCCCTTTGCATTTCCCTTTTGTCACCTGCTGTGGGAAGCTCTTAATCTAACATATTCCAGCCTCGAAAACCCCTTGGCTCGGATCCCAAAGGATAGACTGCTTCGAGAAGTGGAGGAGTACGCTCAATTGTACGACTTGAATGACATCCTTCCCGAGCTGAAGAAGGGCGCATTGGCCGCCCAGAGACCAGGCGAATTCGACGATATCGAGGAGCTGACCCCCGAGGAACGTCAGTTCCTACGTGAGGAAGTGACCCATCGCTGGAAGCACCCCTGGGGCCTGTATTATACGGTTGTGCTCAATTCCATTGCCGCAGCCATCCAAGGATGGGATCAAACAGGTTCCAACGGTGCCAACCTCACCTTCGCGGAACAGTTTGGCATTCCTCAAGATGGCTGCTTGACTCAAGCAGAGTGCACTCGTAATCAGTGGATTGTGGGAGTGATCAACGCCATGCCTTACATTACCATCGCGCTCTTTGCTGGCTGGATCTCCGACCCTCTCAACCACTGGCTGGGCCGCAAGGCTGTCATTGCGATTGCTGCCGTGTTCAGTTTGGTTGCCCCCATAGCATGCGCATTTACTCAGAACTGGCACCAACTGCTGGGCTGTCGTATACTGTTGGGAATCGGTATGGGCTTGAAGGAGGTCACTGTCCCTGTTTTTTCCGCAGAGAACGTACCCACTAGCATCCGTGGAGGCTTGGTCATGTCCTGGCAAGTCTGGACTGCATTTGGCATCTTCCTCGGAACGTGTGCTAACCTTGCTGTGGTTAACACCGGCCGGATTGCCTGGAGGCTACAGCTTGGTTCAGCTTTCATCCCAGCCGTTCCCCTCCTGTTAGGCATTTGGTTCTGTCCTGAATCTCCCCGTTGGCTATTGTCAAAGGAAAACCCGGGCAAGGCGTATGAATCTTTGCTCCGACTGAGAAACAGTCCATTGCAAGCAGCTCGCGATCTCTACTACATCCATGCGCAAATCAAAATGGAAGCTCGGCTCCTCCGGGAATCTGAATTTACAAAGGGCGGCAACACCCTTGCACGGGCCCTGGAATTATTCACAGTCCCTCGAATTCGCCGGGCTACACAGGCCTCTGGCATTGTCATGATTGCGCAGCAAATGTGTGGAATTAACATCATCGCGTTCTACTCATCCACCATCTTTGAGCAAGCCGGCGCCACGAACATCCAGGCCCTGCTTGCTTCCTTCGGCTTTGGCTTGGTGAACTTCCTCTTCGCCTGGCCAGCCGTCTGGACCATCGACACGTTTGGTCGTCGTTGGCTCTTGCTCGCCACCTTCCCCAATATGTGCTGGACCCTGCTCGCTGCCGGATTCTGTTTCTGGATTCCCGCGAGTAGTAGCGCCCATCTAGGTCTGATCGCCCTGTTCATTTACCTGTTCAATATCTTCTACTCCCCTGGCGAAGGCCCCGTCCCTTTCACCTACTCAGCCGAGGTCTTCCCGCTGACTCACCGCGAGATTGGCATGGCGTGGGCTGTGGCGACCAACAATTTCTGGGCAGCCGTGCTGTCTCTGACGTTTCCGTACATGCTGCGTGACTTCAAGCCACAAGGAGCTTTTGGTTTCTACGCAGGATTGAATATTGTTGCTCTGCTGCTCATCTTCTTCTTCTTGCCAGAGACTAAGCAGCGCTCTCTGGAGGAACTCGACCGTGTTTTCAGCATCTCGACCCGTGCTCATGCCAAATACCAGTTGAGCGAAGTGTTGCCGTGGTGGATTCGGCGATATTTATTCGGGCGCAAGGATGCAGTCGTTCGCGATCTTTATGGCCACCTCTCTCCTGACCCCGTTTTGATCTTGGAGAAGCCCGAAAAGGAGGAGCACCTTGAATCTGTATGA > 757 NFIA_053420 encoded_by_transcript_NFIA_053420A;_predicted_by_EVM MFS_phospholipid_transporter_(Git1),_putative XP_001257893.1 NA MMASKGDTQPSPVMTPEKVSSSLDPIPIEEIPLENMQKSRWERSWPTIACGAGLFSDGYLNGVIGPVNTMLSKIYPDTYKNSPASRNVSSIVFAGTVLGQLIFGYVSDHWSRKWALMVSTVILIIFSALSAGSYGAHGSQAGLFAALTAYRFFLGIGIGGEYPAGSVAAAESTGELKSGHRNRWFIMFTNFQIDFGFVVSSLVAMILMLIFTENHMRAAWRVALGLGVIPPLSLFYLRLKLDEPEEFNRQRMHKFPIWLIIKYYWKRLLVVSLIWFIYDFSAYSFGIYSSEWLSIILGDSAPLWKTFGWSTVTNLFYIPGAFLGALTSDWIGPRNTLALGVALQGIVGFIMAGCYVYLREAKNVAAFVVVYGIFSSLGEFGPGDNIGLCAAKTSATSIRGQYYAIAAAFGKIGAFVGTYVFPIIQNNAPNAVRQGQDPYFVSSSLCIFSAFLAYFMLPPIGQDTITEEDAKFRAYLEAQGYDTSTLGNNRPQH bitunicate_ascomycetes Neosartorya_fischeri_NRRL_181 Neosartorya_fischeri_NRRL_181 XM_001257892 NA Nierman,W.C. NA 0:1482 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001509760).COMPLETENESS:_incomplete_on_both_ends. NA 26-MAR-2008 Neosartorya_fischeri_NRRL_181_MFS_phospholipid_transporter_(Git1),_putative_(NFIA_053420)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fischeri_A1DMH5_NEOFI.gb Neosartorya 119469002 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001257892 NA NA green_and_blue_molds sac_fungi NA 1482 NA mRNA NA NRRL_181 NA Neosartorya_fischeri_var._fischeri NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 331117 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Neosartorya Direct_Submission NA XM_001257892.1 ATGATGGCTTCCAAGGGAGACACCCAGCCTTCTCCTGTGATGACTCCTGAAAAGGTCTCGAGCTCTCTTGATCCAATACCCATCGAAGAGATACCGCTGGAGAATATGCAGAAAAGCCGCTGGGAGCGCAGTTGGCCAACCATTGCTTGCGGCGCCGGTCTCTTTTCTGACGGGTATCTCAATGGAGTCATTGGACCGGTCAATACCATGCTAAGCAAGATTTACCCTGACACGTACAAAAACTCCCCTGCCAGCAGGAATGTCTCTTCCATTGTCTTTGCAGGAACCGTGCTTGGTCAACTTATTTTCGGCTATGTCAGTGATCATTGGTCGAGGAAGTGGGCTTTGATGGTCTCCACGGTGATTTTGATCATTTTCAGTGCGCTCTCTGCCGGCTCCTACGGAGCTCATGGTAGCCAAGCTGGTTTGTTCGCCGCTCTGACCGCGTATCGGTTCTTCCTAGGAATCGGAATAGGTGGGGAGTATCCTGCAGGCAGTGTAGCAGCAGCAGAAAGCACGGGCGAGCTGAAGAGCGGCCATCGCAATCGCTGGTTCATCATGTTCACGAACTTCCAGATTGACTTTGGATTCGTCGTATCTTCTCTGGTTGCCATGATTTTGATGTTGATATTTACGGAGAACCACATGCGTGCTGCTTGGCGTGTGGCTCTAGGACTAGGCGTCATTCCGCCTCTGAGTCTGTTTTACTTGCGATTGAAGTTGGACGAGCCGGAGGAATTCAACAGGCAGCGCATGCACAAGTTCCCTATCTGGTTAATTATAAAGTATTACTGGAAGCGCCTGCTTGTGGTCTCCCTGATTTGGTTCATCTATGATTTTTCGGCCTATTCGTTCGGCATCTACTCGTCCGAATGGCTTTCAATCATCCTGGGCGACAGCGCTCCTCTCTGGAAGACTTTTGGGTGGAGCACAGTCACCAATCTTTTCTACATCCCAGGTGCTTTTCTGGGTGCACTGACGAGCGACTGGATCGGTCCGCGCAACACGTTGGCTCTCGGAGTTGCCCTGCAGGGTATCGTCGGCTTTATCATGGCGGGCTGCTACGTATATCTTCGGGAGGCAAAAAATGTTGCTGCGTTTGTCGTTGTCTATGGCATCTTCTCATCTCTCGGTGAATTCGGACCTGGGGACAATATCGGTTTATGTGCTGCAAAGACCAGTGCAACTTCCATCCGTGGCCAATACTACGCGATCGCAGCCGCATTTGGCAAGATAGGCGCTTTTGTTGGCACTTATGTGTTTCCGATAATCCAAAATAACGCTCCCAATGCCGTGCGCCAAGGACAAGATCCTTACTTTGTCAGCAGCTCCTTATGCATCTTCAGCGCTTTTCTGGCCTACTTCATGCTGCCACCTATTGGGCAGGATACAATTACCGAAGAGGACGCCAAGTTCCGTGCTTACCTCGAAGCTCAAGGTTATGATACCTCAACTCTGGGAAATAACCGTCCACAACATTGA > 758 NFIA_056030 encoded_by_transcript_NFIA_056030A;_predicted_by_EVM maltose_permease XP_001258151.1 NA MSDAMGGKPSADAAEQETSVSHKEHIDAVHSVEDSVTFSYIVKHHKAIIAWSFYWAMCAIGWGFDAQINGAVISVPAFRREYGYVLDGEAILPANWQSAFNVASSIGQFFGGFLCSWMADKVGRKRSLLCGCIICIGGTFGEIFSNARGAFLVSKLILGVGLGFYLTLGPLTCSEITPVVLRGLSTAGINLGICVGQLLSNAVIKGFGEREDRWAFAGPFAMQLFFSVMLLAGLPFAPESPWDLVRKNRMDQARKSLHKLWGKDFDVSALLTTIQVSVEESAQQAKASYIDCFRGTNLLRSAISCGGFVCQHLVGIIFVLGYSTYFFELAGLETTHSFDLGVGVTACGVFGNSLSWFIVNSSGRRKLFLSGMATLTALLLLIGIMDVVPSIAAKWVQASLTVIYAFVYFMTVGAISFVLLGEVSTPLLRAKTTALATAVQAVFGIAMNVAVPYMVNPDEANMKGKVGFVFGGCAAVATIVSWVYIPELKGRTFEEIDIMFSTRVPPRHMGSYQIG bitunicate_ascomycetes Neosartorya_fischeri_NRRL_181 Neosartorya_fischeri_NRRL_181 XM_001258150 NA Nierman,W.C. NA 0:1548 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001509760).COMPLETENESS:_incomplete_on_both_ends. NA 26-MAR-2008 Neosartorya_fischeri_NRRL_181_maltose_permease_(NFIA_056030)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fischeri_A1DN83_NEOFI.gb Neosartorya 119471307 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001258150 NA NA green_and_blue_molds sac_fungi NA 1548 NA mRNA NA NRRL_181 NA Neosartorya_fischeri_var._fischeri NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 331117 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Neosartorya Direct_Submission NA XM_001258150.1 ATGTCTGACGCAATGGGGGGAAAGCCCTCTGCAGACGCTGCCGAACAGGAGACTTCTGTTAGCCACAAAGAACACATAGATGCGGTTCATTCAGTCGAAGATTCCGTGACATTCTCTTATATTGTGAAGCACCATAAGGCAATTATCGCGTGGTCTTTTTATTGGGCCATGTGTGCGATCGGCTGGGGTTTCGATGCTCAAATCAACGGTGCAGTAATCTCGGTCCCTGCCTTCCGGCGCGAATACGGATACGTCTTGGATGGGGAAGCGATCCTCCCTGCGAACTGGCAGTCCGCGTTCAATGTAGCCAGCTCGATTGGCCAATTCTTTGGTGGATTTCTCTGCAGCTGGATGGCGGATAAAGTTGGGCGCAAGCGCTCTCTCCTCTGTGGTTGTATCATCTGCATTGGAGGCACCTTTGGTGAAATCTTTTCGAACGCCCGCGGCGCCTTCCTCGTGTCGAAGCTCATTCTTGGGGTTGGCTTGGGATTCTATCTGACACTTGGGCCGCTCACTTGCAGCGAAATTACACCGGTGGTGCTGCGTGGCTTATCGACTGCTGGTATCAACTTGGGTATTTGCGTTGGTCAGCTCCTGTCTAATGCGGTCATTAAGGGATTTGGTGAGCGGGAGGATCGTTGGGCATTCGCGGGGCCGTTTGCAATGCAGCTGTTCTTCTCGGTGATGCTGCTTGCTGGGCTTCCCTTTGCTCCGGAATCACCCTGGGATCTAGTTCGAAAGAACCGGATGGACCAGGCTCGGAAGTCGCTCCATAAGCTATGGGGGAAGGACTTTGACGTCTCTGCTCTACTAACCACAATCCAGGTATCCGTCGAAGAGAGCGCACAGCAAGCAAAGGCCAGTTACATCGACTGCTTTCGCGGTACAAATCTACTCCGCAGCGCCATTTCCTGTGGTGGATTTGTGTGCCAACATCTCGTCGGGATCATCTTCGTCTTGGGTTACTCAACGTACTTCTTCGAACTCGCTGGGCTGGAGACAACGCACTCCTTCGATCTAGGTGTCGGTGTCACAGCTTGCGGTGTTTTTGGCAACTCCCTCAGCTGGTTCATCGTCAATTCTTCCGGCCGTCGGAAATTGTTCCTCTCTGGAATGGCAACTCTTACCGCTCTGCTCCTGCTCATCGGCATCATGGACGTCGTCCCCTCCATCGCAGCGAAATGGGTCCAAGCATCCCTCACAGTTATCTACGCTTTTGTATACTTTATGACTGTTGGGGCCATCTCGTTTGTCCTGTTAGGCGAGGTCTCGACCCCTTTGCTGCGCGCGAAGACCACAGCTTTGGCTACAGCCGTACAGGCAGTTTTCGGCATCGCGATGAATGTTGCTGTTCCTTATATGGTTAATCCCGATGAGGCTAATATGAAAGGCAAGGTAGGTTTCGTGTTTGGTGGCTGTGCGGCGGTTGCTACGATTGTGAGCTGGGTGTATATCCCGGAGCTCAAGGGTCGGACTTTTGAGGAGATTGATATCATGTTCTCGACTCGGGTTCCACCGAGGCACATGGGCTCGTACCAGATTGGTTGA > 759 NFIA_057600 encoded_by_transcript_NFIA_057600A;_predicted_by_EVM maltose_permease XP_001258307.1 NA MAIEKSADHSNIETVHADSADVAVDPTAKSALVSDNIYEHEQTVLQVILGHPVLIWWSFFFSVSAIGWGFDAQVNGAVLSIPSFRRDFGEHYDGDFVVPAPWLSAFNSISSVGQFFGGFLCSTIADRVGRRLALAVGVVITCGGIFGEMFSMARAAFLISKLILGVGLGFYLTIGPLYSSEVSPVVLRGITTAGVNLGIVIGQLLSNAAIRGFGERGDRWAYRGPFAIQFFFVAILAVGLPFSIESPWYLVRRNKIDEARNALQRLYGADTNIETKLVAIQMTVAQDLAAKESKWSDAVRGTNLLRTLISCGVFVCQHLVGIIFVLGFSSYFFQLAGLPTERSFDLGVGVTACGVVGTVISWTIVNRLGRRIIFNSGMAILSTINLLIGILDVVPTNGASWTQAALTVVWAFFYQVSIGAVAFVLLGETSSASLRAKTTAVATATQSVFGIVMNIVIPYMVNPDEANMQGKVGFVFGGLGVIATVLCYLYIPDLKDRTFEEIDLMFENRVQPRKMGAYVIEH bitunicate_ascomycetes Neosartorya_fischeri_NRRL_181 Neosartorya_fischeri_NRRL_181 XM_001258306 NA Nierman,W.C. NA 0:1569 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001509760).COMPLETENESS:_incomplete_on_both_ends. NA 26-MAR-2008 Neosartorya_fischeri_NRRL_181_maltose_permease_(NFIA_057600)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fischeri_A1DNN9_NEOFI.gb Neosartorya 119472270 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001258306 NA NA green_and_blue_molds sac_fungi NA 1569 NA mRNA NA NRRL_181 NA Neosartorya_fischeri_var._fischeri NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 331117 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Neosartorya Direct_Submission NA XM_001258306.1 ATGGCGATCGAAAAGTCTGCCGATCATTCCAACATCGAGACCGTCCACGCCGACTCGGCCGATGTTGCAGTTGATCCCACGGCCAAATCGGCTCTTGTGAGCGACAATATCTACGAGCATGAACAGACTGTCCTGCAGGTTATTCTCGGCCACCCAGTCTTGATCTGGTGGTCGTTCTTCTTCAGCGTCAGTGCCATTGGATGGGGATTTGACGCGCAGGTCAATGGAGCAGTCCTCTCCATCCCCTCTTTCCGACGCGACTTTGGTGAGCACTATGACGGCGATTTTGTCGTCCCTGCCCCCTGGCTGAGCGCTTTCAACTCGATCTCCTCCGTCGGCCAGTTCTTTGGCGGGTTTCTTTGCAGCACTATTGCCGACCGAGTCGGTCGAAGGCTGGCTCTCGCCGTTGGCGTGGTGATCACCTGTGGAGGCATCTTTGGAGAGATGTTCTCTATGGCGCGAGCGGCGTTCCTCATCAGCAAACTGATCCTAGGCGTTGGTCTGGGCTTTTACCTTACCATCGGGCCCTTGTACTCTTCCGAAGTTTCGCCCGTTGTGCTGCGCGGTATCACGACTGCCGGTGTGAATCTCGGTATAGTCATTGGCCAGCTGCTCTCCAACGCGGCCATTAGGGGCTTTGGTGAGCGAGGCGATAGATGGGCATACCGGGGCCCATTTGCGATTCAATTCTTCTTCGTCGCCATCCTAGCTGTCGGGCTTCCCTTCTCCATCGAATCCCCCTGGTACCTCGTTCGCCGCAACAAGATCGACGAGGCCCGAAACGCTCTACAGCGACTATACGGCGCCGACACGAATATCGAGACAAAGCTCGTGGCCATCCAGATGACCGTGGCCCAGGATCTCGCAGCCAAGGAGTCCAAGTGGTCCGACGCCGTCCGCGGCACGAACCTCCTGCGGACGCTGATCTCCTGCGGCGTCTTCGTGTGCCAGCACCTGGTCGGCATCATCTTTGTCCTCGGGTTCTCCTCGTACTTCTTCCAGCTAGCCGGCCTGCCGACGGAGCGCTCATTTGATCTCGGCGTCGGCGTGACCGCCTGCGGCGTCGTGGGCACCGTCATCTCCTGGACAATCGTCAACCGCCTGGGCCGCCGCATCATCTTCAACTCCGGCATGGCCATCCTCAGCACGATCAATTTGCTCATCGGGATCCTCGACGTCGTCCCCACCAACGGCGCGAGCTGGACACAGGCCGCGCTGACCGTCGTCTGGGCCTTCTTCTACCAGGTCAGCATCGGCGCCGTTGCCTTTGTGCTGCTCGGTGAAACCTCGTCCGCGTCACTACGAGCCAAGACAACCGCCGTGGCAACCGCAACGCAGTCCGTCTTCGGAATCGTCATGAACATTGTGATTCCGTACATGGTGAACCCGGACGAGGCGAATATGCAGGGCAAGGTCGGATTTGTCTTCGGCGGGCTCGGTGTGATCGCCACCGTGCTGTGCTACTTGTATATTCCAGACTTGAAGGATCGCACTTTCGAGGAGATTGATCTCATGTTTGAGAACCGAGTGCAGCCGCGCAAGATGGGCGCGTATGTGATCGAGCACTAG > 760 NFIA_060380 encoded_by_transcript_NFIA_060380A;_predicted_by_EVM MFS_sugar_transporter,_putative XP_001258579.1 NA MVVVPKHREEDVAEPVLANLLADDHTPWYKKPNLRYLYLILFPACMGIEITSGFDSQIINTVQIVYTWNKYFGHPTGAVVDGKPKYEIEANLKGFLGAAYSLGAIISLPFVPWVNQRFGRRWTIVFGSCISLVGALLQGFANGVGMYVVARMVLGFGIPFCIVAGSSLLGELGYPKERPILTSLFNSSYFIGQIIAASVGLGTVTIKTDWAWRIPSLLQIAPAMVQIVFVFLLPESPRYLISKDRHEEAFDILTKYHAEGDRSSVIVRAEIAQIQRTIKLELEEAKQTWWDMFRTAGMRRRLLISAFLGLFTQWSGNTLISYYLSDLLEMVNITDGVVKSKINIGIACWGLVCGTTLALTAPRFKRRTMYLTCACSLLCVYVAWTISMERFLATHAKAAAILTIFFIFCYSPAYNLGYNALTYTYLVEIFPYFGRSRGLSWFQFYGRGATFFATYVNPVGLKNIGWKWLLVYCCWLAFEVAFIYLLFPETSGRTLEELSFMFEGKEKANEVAAAVHKQLDQGHDEKAQNVHVEVASRA bitunicate_ascomycetes Neosartorya_fischeri_NRRL_181 Neosartorya_fischeri_NRRL_181 XM_001258578 NA Nierman,W.C. NA 0:1617 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001509760).COMPLETENESS:_incomplete_on_both_ends. NA 26-MAR-2008 Neosartorya_fischeri_NRRL_181_MFS_sugar_transporter,_putative_(NFIA_060380)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fischeri_A1DPG1_NEOFI.gb Neosartorya 119473355 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001258578 NA NA green_and_blue_molds sac_fungi NA 1617 NA mRNA NA NRRL_181 NA Neosartorya_fischeri_var._fischeri NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 331117 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Neosartorya Direct_Submission NA XM_001258578.1 ATGGTTGTAGTGCCAAAGCACCGTGAGGAAGATGTCGCGGAGCCCGTCCTGGCCAACTTGCTGGCCGACGATCACACTCCTTGGTACAAGAAGCCCAATTTGAGATACTTGTATCTTATTCTGTTTCCTGCATGCATGGGAATCGAGATCACCTCGGGATTCGACTCGCAAATCATCAATACTGTGCAGATCGTCTACACGTGGAACAAATATTTCGGTCACCCAACCGGAGCTGTTGTCGACGGCAAACCCAAGTATGAGATCGAAGCAAATCTCAAAGGTTTCCTTGGAGCCGCATATTCCCTCGGAGCCATCATCTCCCTCCCGTTTGTCCCCTGGGTAAACCAGCGATTCGGACGACGATGGACGATCGTGTTTGGTTCCTGCATCAGTCTGGTGGGTGCTCTTCTGCAGGGCTTTGCCAACGGAGTCGGCATGTATGTCGTCGCGCGGATGGTCCTTGGATTCGGCATTCCCTTTTGCATCGTTGCCGGGTCTTCCCTTCTGGGTGAACTGGGATATCCCAAGGAACGACCCATTTTGACCTCGCTGTTCAATTCTTCGTACTTTATCGGCCAGATCATTGCTGCTTCCGTCGGCTTGGGGACGGTGACCATCAAAACCGACTGGGCGTGGAGAATTCCGTCCCTCCTTCAGATTGCACCGGCGATGGTGCAGATTGTCTTCGTCTTTCTCCTTCCTGAAAGCCCCCGGTATTTAATTAGTAAGGATCGCCACGAGGAGGCCTTTGACATCCTGACCAAATACCATGCCGAGGGTGACCGCAGCTCGGTCATCGTGCGAGCCGAAATCGCGCAGATCCAACGCACCATCAAGCTCGAGCTCGAAGAGGCCAAGCAGACGTGGTGGGATATGTTCCGCACCGCTGGTATGCGTCGTCGGTTGCTCATTTCGGCGTTTTTGGGATTGTTCACCCAGTGGTCGGGCAATACCTTGATCTCATACTACCTGAGTGACCTCCTGGAAATGGTCAACATCACCGACGGAGTAGTCAAGTCAAAGATCAACATCGGCATTGCGTGCTGGGGTCTCGTCTGCGGCACGACGCTGGCGCTAACTGCTCCTCGATTCAAACGACGGACAATGTACCTAACCTGTGCCTGTTCGTTGCTCTGCGTGTATGTCGCCTGGACCATCTCCATGGAACGCTTCCTGGCTACCCACGCCAAAGCCGCCGCCATCCTGACCATTTTCTTCATTTTCTGCTATTCGCCGGCTTATAACCTCGGCTACAACGCGTTGACATATACCTACCTGGTTGAAATCTTCCCCTACTTTGGTCGCTCCAGAGGTCTCTCGTGGTTCCAGTTCTACGGACGAGGCGCCACCTTCTTTGCAACCTATGTGAACCCCGTCGGCTTGAAGAATATCGGCTGGAAGTGGCTGCTGGTGTATTGCTGCTGGTTGGCTTTCGAGGTGGCGTTTATCTATTTGCTCTTTCCCGAGACGTCCGGCAGAACTCTCGAGGAGTTATCTTTCATGTTCGAGGGCAAAGAAAAGGCAAATGAAGTGGCTGCAGCTGTTCACAAGCAGCTTGATCAGGGGCATGATGAGAAGGCGCAGAATGTTCACGTTGAGGTGGCTTCGCGGGCGTGA > 761 NFIA_060500 encoded_by_transcript_NFIA_060500A;_predicted_by_EVM hexose_transporter,_putative XP_001258591.1 NA MGFRLRPPKQSQRVLPVKPPKGHFFFAGREFARLPWWKRRNMRTLYIFIVILILTNTANGFDGSMMNGLQTLSYWQNYFNHPRGSILGLFNASMSLGSLIGLFIVPYLIDWAGRKIGLVIGSVIMLLAVGLQSGARNFGMFFAARIILGFGDCIVLGSAPLLIAEIAHPQDRAILVTLSGASYHSGAFIASWVTLGTLQISSDWSWRLPSLLQAICTVVIIAGVWWMPESPRWLINKGRHEEALEILVKYHAEGDHNDEFVQLEYSEIKAAIALDKEIGHTGWADFLRSKGNRKRIALITALGLFSQWSGNGLISYYLKYVMDSVGIKDAQTQLGINAGMKTEGLVVNFVFAFFIDILGRRPVYLTSTIGTFVVFNAWTIVSARYEIAPNKALGYAFVFLTFLYGVFYDIKSGLMANYTTEILPYGLRAKGFTWLNFCVTAALFFNQYINAIALDALAWKYYIVYCVFLGFEVFVIYSFLIETRYTPMEEIAKYFDGEDAVDVGQVAAADLKEQGIIASDDKDMATIHIEKKE bitunicate_ascomycetes Neosartorya_fischeri_NRRL_181 Neosartorya_fischeri_NRRL_181 XM_001258590 NA Nierman,W.C. NA 0:1602 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001509760).COMPLETENESS:_incomplete_on_both_ends. NA 26-MAR-2008 Neosartorya_fischeri_NRRL_181_hexose_transporter,_putative_(NFIA_060500)_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fischeri_A1DPH3_NEOFI.gb Neosartorya 119473382 Submitted_(26-OCT-2006)_The_Institute_for_Genomic_Research,_9712_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_001258590 NA NA green_and_blue_molds sac_fungi NA 1602 NA mRNA NA NRRL_181 NA Neosartorya_fischeri_var._fischeri NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 331117 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Neosartorya Direct_Submission NA XM_001258590.1 ATGGGCTTCCGACTTCGACCTCCAAAGCAGAGCCAAAGGGTACTCCCCGTGAAGCCTCCGAAAGGACACTTCTTCTTTGCGGGCAGGGAGTTCGCTCGTCTTCCCTGGTGGAAGCGACGAAACATGCGCACCCTCTACATTTTCATCGTCATCCTGATTCTCACCAATACGGCAAACGGCTTCGATGGCTCGATGATGAACGGACTCCAGACCCTGTCCTATTGGCAGAATTACTTCAATCATCCCCGCGGCTCCATCCTCGGTCTCTTCAATGCCTCTATGAGTCTCGGGTCTTTGATAGGTCTCTTCATCGTCCCATACCTGATCGACTGGGCAGGGCGAAAAATTGGGTTGGTCATCGGGAGTGTGATTATGCTGCTCGCCGTCGGTCTGCAGTCCGGTGCCAGGAATTTCGGCATGTTTTTTGCGGCCCGGATTATCCTCGGTTTTGGAGACTGTATCGTTCTGGGAAGTGCGCCTCTCTTGATTGCTGAGATCGCTCATCCGCAAGATCGGGCTATCCTCGTCACCCTCAGCGGAGCATCGTATCATTCCGGAGCATTCATAGCCAGCTGGGTCACTCTTGGTACTCTCCAGATCTCGAGCGACTGGTCATGGCGATTGCCGAGCTTACTACAAGCCATCTGCACCGTAGTCATTATTGCCGGCGTCTGGTGGATGCCCGAGAGCCCACGTTGGCTGATAAACAAAGGACGGCACGAAGAGGCTCTGGAGATCCTGGTGAAGTATCATGCCGAGGGTGATCACAATGACGAGTTTGTTCAGCTTGAGTACTCTGAAATCAAAGCAGCTATCGCCCTCGACAAAGAAATCGGCCACACTGGCTGGGCAGACTTTTTGAGGTCCAAGGGAAATCGCAAGCGGATTGCATTGATCACGGCTCTCGGTCTCTTCAGCCAATGGAGTGGGAATGGTCTTATCTCCTACTACCTCAAATATGTCATGGATAGCGTCGGTATCAAGGACGCGCAGACTCAGCTCGGTATTAATGCAGGCATGAAGACTGAGGGCTTGGTTGTCAACTTTGTCTTTGCCTTTTTCATTGACATTCTCGGACGACGGCCTGTCTATCTGACCTCGACTATTGGTACATTCGTCGTTTTCAACGCCTGGACCATTGTATCAGCGCGGTATGAGATTGCACCAAACAAAGCGCTCGGCTATGCGTTTGTGTTCCTCACGTTCCTGTACGGAGTCTTCTACGATATCAAGTCCGGCCTCATGGCGAACTATACAACGGAGATCCTCCCCTACGGACTTCGAGCCAAAGGCTTCACGTGGCTCAACTTCTGCGTCACTGCTGCTCTCTTCTTCAATCAGTACATTAATGCCATCGCCCTTGATGCCTTGGCTTGGAAGTACTACATTGTGTACTGTGTGTTCCTGGGATTCGAAGTGTTCGTGATTTACTCTTTCCTCATTGAAACCCGATACACGCCTATGGAGGAAATTGCCAAATATTTCGACGGCGAGGACGCTGTTGATGTCGGTCAAGTTGCTGCTGCAGATTTGAAGGAGCAGGGTATAATAGCATCGGACGACAAGGATATGGCCACTATTCACATTGAAAAGAAAGAGTAG > 762 AFUA_6G04270 encoded_by_transcript_AFUA_6G04270A;_similar_to_GB:CAC08232.1:_fructose_symporter_Saccharomyces_pastorianus MFS_sugar_transporter XP_001481451.1 NA MAVKDVEVPLDDHKEVAEEMDDIQNDLKSEAFNEAAMDAELQQLEAQLGSVKQSRLELTFANPAYFTYVLVAFASMGGLLSGLDQSLISGANLTMPKALHLSASQASLVNAGMPLGAVGGALILGPCNEFLGRRMAIIVSCILYTIGAGLEAGAINFGMMFGGRFVLGMGVGLEGGTVPVYVAESVPGKIRGNLVSLYQLNIAFGEVLGYAVAAMFFGVAGDWRYILGSSLVFSTILLVGMLFMPESPRYLMHKGRPVEAYGVWKRIRGFDSYESKEEFLGMRQAVAAENEEQANTKKWAWLDFFTNGRARRAMIYANIMVFLGQFTGVNAVMYYMGVLMTKIGFDDRTSVYMSLVGGGSLLIGTIPAVLYMERFGRRYWANVMLPGFFIGLVLVGAGYTIDYKTYPATAEGLYLTGIILYMGFFGSYACLTWVIPAEVFPTYLRSYGMTTADANLFLCSFIVTYNFTAMMNSMTRIGLTLGFYGGIAVLGWFYQVLFMPETKNKSLEEIDELFSKPTSVIVKQNIKSTVEIMRDLSHLRFRKVFSPSPRL bitunicate_ascomycetes Aspergillus_fumigatus_Af293 Aspergillus_fumigatus_Af293 XM_001481401 NA Nierman,W.C.,_Pain,A.,_Anderson,M.J.,_Wortman,J.R.,_Kim,H.S.,_Arroyo,J.,_Berriman,M.,_Abe,K.,_Archer,D.B.,_Bermejo,C.,_Bennett,J.,_Bowyer,P.,_Chen,D.,_Collins,M.,_Coulsen,R.,_Davies,R.,_Dyer,P.S.,_Farman,M.,_Fedorova,N.,_Fedorova,N.,_Feldblyum,T.V.,_Fischer,R.,_Fosker,N.,_Fraser,A.,_Garcia,J.L.,_Garcia,M.J.,_Goble,A.,_Goldman,G.H.,_Gomi,K.,_Griffith-Jones,S.,_Gwilliam,R.,_Haas,B.,_Haas,H.,_Harris,D.,_Horiuchi,H.,_Huang,J.,_Humphray,S.,_Jimenez,J.,_Keller,N.,_Khouri,H.,_Kitamoto,K.,_Kobayashi,T.,_Konzack,S.,_Kulkarni,R.,_Kumagai,T.,_Lafon,A.,_Latge,J.P.,_Li,W.,_Lord,A.,_Lu,C.,_Majoros,W.H.,_May,G.S.,_Miller,B.L.,_Mohamoud,Y.,_Molina,M.,_Monod,M.,_Mouyna,I.,_Mulligan,S.,_Murphy,L.,_ONeil,S.,_Paulsen,I.,_Penalva,M.A.,_Pertea,M.,_Price,C.,_Pritchard,B.L.,_Quail,M.A.,_Rabbinowitsch,E.,_Rawlins,N.,_Rajandream,M.A.,_Reichard,U.,_Renauld,H.,_Robson,G.D.,_Rodriguez_de_Cordoba,S.,_Rodriguez-Pena,J.M.,_Ronning,C.M.,_Rutter,S.,_Salzberg,S.L.,_Sanchez,M.,_Sanchez-Ferrero,J.C.,_Saunders,D.,_Seeger,K.,_Squares,R.,_Squares,S.,_Takeuchi,M.,_Tekaia,F.,_Turner,G.,_Vazquez_de_Aldana,C.R.,_Weidman,J.,_White,O.,_Woodward,J.,_Yu,J.H.,_Fraser,C.,_Galagan,J.E.,_Asai,K.,_Machida,M.,_Hall,N.,_Barrell,B._and_Denning,D.W. NA 0:1656 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_007199).COMPLETENESS:_incomplete_on_both_ends. NA 27-FEB-2008 Aspergillus_fumigatus_Af293_MFS_sugar_transporter_(AFUA_6G04270),_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fumigata_A4DA18_ASPFU.gb Aspergillus 146324342 Nature_438_(7071),_1151-1156_(2005) fungi XM_001481401 NA NA green_and_blue_molds sac_fungi 16372009 1656 6 mRNA NA Af293 NA Sartorya_fumigata NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 330879 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_sequence_of_the_pathogenic_and_allergenic_filamentous_fungus_Aspergillus_fumigatus NA XM_001481401.1 ATGGCTGTTAAAGATGTTGAGGTTCCTCTCGACGACCACAAGGAGGTCGCCGAAGAGATGGATGATATTCAAAATGACCTCAAGTCCGAGGCTTTCAACGAAGCTGCCATGGATGCTGAGCTCCAGCAGCTGGAAGCACAGCTCGGCAGCGTAAAACAGTCTCGGCTTGAGCTCACTTTCGCCAACCCCGCTTACTTCACTTACGTTCTGGTCGCCTTTGCGTCTATGGGTGGTCTACTCTCTGGTCTGGATCAGTCGTTGATCAGCGGTGCGAACCTCACCATGCCCAAGGCTTTGCATCTGTCCGCCTCGCAAGCTAGTTTGGTCAACGCCGGTATGCCACTTGGTGCCGTCGGTGGTGCCCTGATCCTTGGTCCATGCAACGAGTTCCTTGGTCGGCGCATGGCCATCATTGTCTCCTGCATCCTTTACACTATCGGTGCTGGACTCGAAGCCGGCGCCATCAACTTTGGCATGATGTTCGGCGGCCGATTCGTTCTTGGCATGGGTGTCGGTCTTGAGGGTGGTACTGTCCCTGTCTACGTCGCCGAGTCTGTCCCCGGTAAGATCCGTGGTAACCTGGTCTCTTTGTATCAGTTGAACATTGCTTTTGGTGAGGTCCTCGGCTATGCAGTTGCCGCGATGTTCTTTGGTGTCGCCGGCGACTGGCGCTACATTCTCGGCTCTTCCCTGGTCTTCTCAACCATCCTTCTGGTCGGTATGCTCTTCATGCCTGAGAGCCCCCGTTACCTGATGCACAAGGGAAGACCGGTCGAGGCGTATGGTGTGTGGAAGCGCATTCGCGGCTTCGACTCTTACGAGTCCAAGGAGGAATTTCTGGGCATGCGTCAAGCTGTCGCCGCGGAGAACGAAGAACAAGCCAACACGAAGAAGTGGGCTTGGCTGGACTTTTTCACTAATGGCCGGGCTCGCCGCGCCATGATCTACGCCAACATCATGGTATTCCTCGGTCAATTTACGGGTGTGAACGCAGTTATGTACTACATGGGTGTTCTGATGACGAAGATCGGCTTCGATGACCGTACCAGTGTCTATATGTCGCTCGTTGGAGGTGGATCCCTGTTGATCGGTACTATTCCCGCAGTGCTGTACATGGAGCGGTTCGGTCGACGCTACTGGGCCAACGTTATGCTTCCTGGTTTCTTCATCGGTCTGGTGCTCGTGGGAGCAGGCTACACCATCGACTACAAGACCTATCCGGCCACGGCTGAAGGTCTCTATTTGACCGGTATCATCCTTTACATGGGGTTCTTCGGCTCCTATGCCTGCTTGACCTGGGTCATTCCCGCCGAGGTCTTCCCCACTTATCTCCGGAGTTACGGCATGACCACTGCGGACGCCAACCTCTTCCTGTGCTCCTTCATCGTCACCTACAACTTTACCGCGATGATGAATTCGATGACTCGTATCGGTCTCACGCTCGGTTTCTACGGAGGTATCGCCGTCCTGGGTTGGTTCTACCAGGTCCTCTTCATGCCCGAGACCAAGAACAAGTCCCTCGAGGAGATTGACGAGCTTTTCTCCAAGCCTACCTCTGTTATCGTCAAACAGAACATCAAGAGCACTGTCGAGATCATGCGCGACCTGTCTCACTTGCGCTTCAGAAAGGTCTTTAGCCCTAGTCCTAGGCTGTAG > 763 AFUA_8G00770 encoded_by_transcript_AFUA_8G00770A sugar_transporter_family_protein XP_747128.1 NA MAAGWFYSPSQIGRYILTRFTSLKPPRNKIRNPISVLRELTTHQWLMFLVGFLGWTWDSFDFFTVSMTVTEIAKDFDTSVTSVTWGITVTLMLRSVGALISGFFSDRYGRKWPFIITLSAFIVLELVSGFCQNLPQFLGVRALYGIAMGGLFGPAAATALEDLPYDARGVLSGCFEMGYAVGYLLAAAFYRALVPTTSHGWRSLFWFGAAPPVLIIFFRWMLPETNHFQVMVAEREERIRLAHAEDDHVRAMGLRSFLKDSGTALKENWVLFIYLVVLMTGFNSCSHGSQDFYPTFLKDQVGLQPTQVTVITVVGQAGAFVGANFFGYISTFFGRRLTMMVTCVIGGALVPVYILPRDMSLIAAVFWQQFCVGGVWGPIPIHLMEVNPPALRSLLVGLTYQLGNLASSASATIQSTIGSRYPLPPIEANKKRFDYGKVIGIFLGAVWAYILFFLFWGPEMSAEEREEEAEAAKYLENLRSEGVSLAEIGVVQARKAKGAGMPPRDNDEEKGNEAITEHIE bitunicate_ascomycetes Aspergillus_fumigatus_Af293 Aspergillus_fumigatus_Af293 XM_742035 NA Nierman,W.C.,_Pain,A.,_Anderson,M.J.,_Wortman,J.R.,_Kim,H.S.,_Arroyo,J.,_Berriman,M.,_Abe,K.,_Archer,D.B.,_Bermejo,C.,_Bennett,J.,_Bowyer,P.,_Chen,D.,_Collins,M.,_Coulsen,R.,_Davies,R.,_Dyer,P.S.,_Farman,M.,_Fedorova,N.,_Fedorova,N.,_Feldblyum,T.V.,_Fischer,R.,_Fosker,N.,_Fraser,A.,_Garcia,J.L.,_Garcia,M.J.,_Goble,A.,_Goldman,G.H.,_Gomi,K.,_Griffith-Jones,S.,_Gwilliam,R.,_Haas,B.,_Haas,H.,_Harris,D.,_Horiuchi,H.,_Huang,J.,_Humphray,S.,_Jimenez,J.,_Keller,N.,_Khouri,H.,_Kitamoto,K.,_Kobayashi,T.,_Konzack,S.,_Kulkarni,R.,_Kumagai,T.,_Lafon,A.,_Latge,J.P.,_Li,W.,_Lord,A.,_Lu,C.,_Majoros,W.H.,_May,G.S.,_Miller,B.L.,_Mohamoud,Y.,_Molina,M.,_Monod,M.,_Mouyna,I.,_Mulligan,S.,_Murphy,L.,_ONeil,S.,_Paulsen,I.,_Penalva,M.A.,_Pertea,M.,_Price,C.,_Pritchard,B.L.,_Quail,M.A.,_Rabbinowitsch,E.,_Rawlins,N.,_Rajandream,M.A.,_Reichard,U.,_Renauld,H.,_Robson,G.D.,_Rodriguez_de_Cordoba,S.,_Rodriguez-Pena,J.M.,_Ronning,C.M.,_Rutter,S.,_Salzberg,S.L.,_Sanchez,M.,_Sanchez-Ferrero,J.C.,_Saunders,D.,_Seeger,K.,_Squares,R.,_Squares,S.,_Takeuchi,M.,_Tekaia,F.,_Turner,G.,_Vazquez_de_Aldana,C.R.,_Weidman,J.,_White,O.,_Woodward,J.,_Yu,J.H.,_Fraser,C.,_Galagan,J.E.,_Asai,K.,_Machida,M.,_Hall,N.,_Barrell,B._and_Denning,D.W. NA 0:1563 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_007201).COMPLETENESS:_incomplete_on_both_ends. NA 27-FEB-2008 Aspergillus_fumigatus_Af293_sugar_transporter_family_protein_(AFUA_8G00770),_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fumigata_Q4WB22_ASPFU.gb Aspergillus 70983200 Nature_438_(7071),_1151-1156_(2005) fungi XM_742035 NA NA green_and_blue_molds sac_fungi 16372009 1563 8 mRNA NA Af293 NA Sartorya_fumigata NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 330879 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_sequence_of_the_pathogenic_and_allergenic_filamentous_fungus_Aspergillus_fumigatus NA XM_742035.1 ATGGCCGCGGGGTGGTTCTACTCCCCGAGTCAGATAGGCCGGTACATCCTCACCCGATTTACCAGTCTCAAGCCCCCAAGGAACAAAATCCGCAATCCCATTTCTGTCCTGCGAGAACTGACCACCCACCAATGGCTCATGTTTCTGGTTGGCTTCTTGGGATGGACCTGGGATTCATTCGACTTTTTCACCGTATCGATGACGGTGACTGAGATTGCAAAAGACTTTGATACCTCTGTCACCAGTGTTACCTGGGGCATCACCGTCACCCTGATGCTTCGATCAGTCGGCGCCTTGATCTCCGGTTTCTTTTCGGATAGATACGGAAGGAAATGGCCGTTCATAATCACATTGTCGGCTTTTATAGTCCTGGAGCTTGTGTCTGGATTCTGCCAGAATCTGCCACAGTTTCTGGGTGTCCGTGCGTTGTACGGAATAGCAATGGGAGGTCTCTTTGGCCCGGCCGCTGCCACCGCTCTAGAGGACCTTCCCTACGATGCTCGCGGAGTGTTATCGGGTTGTTTTGAAATGGGATACGCCGTCGGATACCTCCTTGCAGCTGCATTCTACCGCGCCCTGGTCCCCACGACTAGCCACGGCTGGCGCAGTCTGTTCTGGTTCGGCGCTGCTCCCCCAGTCCTCATTATCTTCTTCCGCTGGATGCTCCCCGAGACCAATCACTTCCAGGTCATGGTAGCCGAGCGCGAGGAGCGCATCCGGCTGGCGCACGCAGAGGACGACCACGTCCGCGCGATGGGCCTTCGCTCGTTCCTGAAAGATTCCGGCACCGCGTTGAAAGAGAACTGGGTGCTTTTCATCTACCTCGTCGTCTTGATGACGGGATTCAACTCCTGCTCTCATGGAAGTCAGGACTTTTATCCCACCTTCCTGAAAGATCAGGTCGGTCTCCAACCAACCCAGGTCACGGTCATCACCGTCGTGGGCCAAGCCGGTGCCTTCGTCGGTGCCAACTTCTTCGGCTACATTAGTACCTTCTTTGGTCGCCGCTTAACCATGATGGTGACCTGTGTTATCGGTGGTGCCTTGGTTCCCGTGTATATTCTGCCCCGCGACATGAGCTTGATCGCCGCCGTCTTCTGGCAGCAGTTCTGCGTCGGTGGTGTCTGGGGGCCGATCCCGATTCATCTGATGGAAGTGAATCCCCCTGCGCTTCGCTCACTTCTAGTTGGCTTGACGTATCAGCTGGGAAATCTTGCCTCGTCTGCATCAGCTACGATCCAGTCGACGATTGGGTCGCGGTATCCTTTGCCTCCCATTGAAGCTAATAAGAAGCGCTTCGATTACGGCAAGGTTATTGGGATTTTCCTGGGTGCCGTCTGGGCGTATATCCTGTTTTTCCTCTTCTGGGGGCCGGAGATGTCCGCGGAAGAAAGGGAGGAGGAAGCAGAGGCGGCTAAGTACCTGGAAAACCTTCGTTCAGAGGGGGTCAGTCTGGCTGAGATTGGAGTTGTGCAGGCGAGGAAGGCCAAGGGGGCTGGGATGCCACCTCGAGATAATGATGAAGAGAAGGGGAATGAGGCCATTACCGAGCACATTGAGTGA > 764 AFUA_7G05100 encoded_by_transcript_AFUA_7G05100A hexose_transporter_protein XP_748999.1 NA MTSHHDRQERPDEDNFEGLTLKDVTPKRPPFYRDWTLLQLNTLLLCALLTQIASGYDSSMLNGMQALPQWNKYFGKPTGTRLGAMTFGPTGGILISVLVSSQLCERFGRRYPICGGSLIIILGSIIQAAAVNYGMFVVSRFLVGLGLGIVATAAPPLLTEVAYPSQRGKLVSFYLTTWSLGSLIAAWITYGTFKMTDSSWSWRIPSVLQCVFSLIQAVLSLLAPESPRWLIYHGRREEALAMLAKYHADGDTSSRLVRFEMAEITATLEMEKIQRASRWTEWVATRGNRHRLFLALYIPAMLQWAGNGLTSYYLSKVLNTINVTDPHVQLIINACLSVWSFLTAAFFATLVDRAGRRRLFLGGMGGMGVSYVIWTVCSALNEEHHFQDKGYAAGVLVMIFLFSAAYHACSPVAPTYIMEVVPYSLRAKASMMYQLTGNLAGIYNSFANPVAMDAISWRYYIVWCCVIGVHFVLIFLFFPETKGKGLEEVAEIFDGPNALSGVNAMRQMGLDVHADKAVAVKGGVANEHVERVEA bitunicate_ascomycetes Aspergillus_fumigatus_Af293 Aspergillus_fumigatus_Af293 XM_743906 NA Nierman,W.C.,_Pain,A.,_Anderson,M.J.,_Wortman,J.R.,_Kim,H.S.,_Arroyo,J.,_Berriman,M.,_Abe,K.,_Archer,D.B.,_Bermejo,C.,_Bennett,J.,_Bowyer,P.,_Chen,D.,_Collins,M.,_Coulsen,R.,_Davies,R.,_Dyer,P.S.,_Farman,M.,_Fedorova,N.,_Fedorova,N.,_Feldblyum,T.V.,_Fischer,R.,_Fosker,N.,_Fraser,A.,_Garcia,J.L.,_Garcia,M.J.,_Goble,A.,_Goldman,G.H.,_Gomi,K.,_Griffith-Jones,S.,_Gwilliam,R.,_Haas,B.,_Haas,H.,_Harris,D.,_Horiuchi,H.,_Huang,J.,_Humphray,S.,_Jimenez,J.,_Keller,N.,_Khouri,H.,_Kitamoto,K.,_Kobayashi,T.,_Konzack,S.,_Kulkarni,R.,_Kumagai,T.,_Lafon,A.,_Latge,J.P.,_Li,W.,_Lord,A.,_Lu,C.,_Majoros,W.H.,_May,G.S.,_Miller,B.L.,_Mohamoud,Y.,_Molina,M.,_Monod,M.,_Mouyna,I.,_Mulligan,S.,_Murphy,L.,_ONeil,S.,_Paulsen,I.,_Penalva,M.A.,_Pertea,M.,_Price,C.,_Pritchard,B.L.,_Quail,M.A.,_Rabbinowitsch,E.,_Rawlins,N.,_Rajandream,M.A.,_Reichard,U.,_Renauld,H.,_Robson,G.D.,_Rodriguez_de_Cordoba,S.,_Rodriguez-Pena,J.M.,_Ronning,C.M.,_Rutter,S.,_Salzberg,S.L.,_Sanchez,M.,_Sanchez-Ferrero,J.C.,_Saunders,D.,_Seeger,K.,_Squares,R.,_Squares,S.,_Takeuchi,M.,_Tekaia,F.,_Turner,G.,_Vazquez_de_Aldana,C.R.,_Weidman,J.,_White,O.,_Woodward,J.,_Yu,J.H.,_Fraser,C.,_Galagan,J.E.,_Asai,K.,_Machida,M.,_Hall,N.,_Barrell,B._and_Denning,D.W. NA 0:1605 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_007200).COMPLETENESS:_incomplete_on_both_ends. NA 27-FEB-2008 Aspergillus_fumigatus_Af293_hexose_transporter_protein_(AFUA_7G05100),_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fumigata_Q4WGI0_ASPFU.gb Aspergillus 70987029 Nature_438_(7071),_1151-1156_(2005) fungi XM_743906 NA NA green_and_blue_molds sac_fungi 16372009 1605 7 mRNA NA Af293 NA Sartorya_fumigata NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 330879 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_sequence_of_the_pathogenic_and_allergenic_filamentous_fungus_Aspergillus_fumigatus NA XM_743906.1 ATGACTTCTCACCACGATCGACAGGAGAGACCAGACGAGGACAACTTTGAAGGCCTCACGCTCAAGGATGTCACTCCCAAACGCCCTCCCTTCTACCGGGATTGGACCCTCCTCCAACTCAACACCCTTCTGCTGTGTGCCCTCCTCACGCAAATCGCCTCGGGATACGACAGCAGCATGCTCAACGGCATGCAGGCCCTCCCGCAATGGAACAAGTACTTTGGCAAACCAACCGGCACCCGTCTCGGCGCCATGACGTTTGGCCCAACCGGTGGCATCCTGATCTCCGTGCTGGTCTCCTCCCAGCTGTGCGAGCGCTTCGGCCGCCGGTACCCCATCTGCGGCGGCTCGCTCATCATCATCCTGGGCTCGATCATCCAGGCCGCCGCCGTCAACTACGGCATGTTCGTGGTCTCGCGCTTCTTGGTCGGCCTGGGGCTGGGCATCGTCGCTACCGCCGCCCCGCCTCTCCTGACCGAGGTCGCCTACCCGTCCCAGCGAGGCAAGCTCGTCTCCTTCTATCTCACCACCTGGTCGCTGGGCTCCCTCATCGCCGCCTGGATCACCTACGGCACCTTCAAGATGACCGACTCCAGCTGGAGCTGGCGCATCCCCAGCGTCCTGCAATGCGTCTTCTCGCTCATCCAGGCCGTGCTCAGCCTGCTCGCCCCGGAGTCCCCCCGCTGGCTCATCTACCACGGCCGCCGCGAGGAAGCGCTCGCCATGCTGGCCAAATACCACGCCGACGGGGACACCTCGTCCCGCCTCGTCCGCTTCGAAATGGCCGAAATCACCGCCACGCTCGAAATGGAGAAGATCCAGCGCGCCTCCCGCTGGACGGAGTGGGTCGCGACCCGGGGCAACCGGCACCGCCTGTTTTTGGCGCTCTACATCCCCGCCATGCTGCAGTGGGCCGGCAACGGGCTGACCTCGTACTACCTCTCCAAGGTCCTCAACACCATCAACGTGACGGACCCGCACGTCCAGCTCATCATCAACGCCTGCCTCTCCGTCTGGTCGTTCCTGACCGCCGCCTTCTTCGCGACGCTGGTCGACCGCGCCGGTCGCCGCCGGCTCTTCCTCGGCGGCATGGGCGGCATGGGCGTCTCCTACGTCATCTGGACGGTCTGCTCGGCGCTGAACGAGGAACACCACTTCCAGGATAAGGGCTATGCGGCGGGCGTGCTGGTCATGATCTTCCTGTTCAGCGCCGCGTACCATGCGTGTTCGCCCGTGGCGCCGACGTACATCATGGAAGTCGTGCCGTACTCGCTGCGCGCCAAGGCGAGCATGATGTACCAGCTGACCGGCAACCTCGCCGGGATCTACAACTCGTTTGCCAACCCCGTGGCCATGGATGCGATTTCGTGGCGGTATTATATCGTCTGGTGCTGTGTGATTGGCGTGCACTTTGTGTTGATCTTTCTCTTCTTCCCGGAGACCAAGGGCAAGGGCTTGGAGGAGGTGGCCGAGATCTTTGACGGGCCGAATGCGCTGTCGGGGGTGAATGCGATGCGCCAGATGGGGTTGGATGTGCATGCCGACAAGGCGGTTGCTGTGAAGGGTGGCGTTGCGAATGAGCATGTTGAGAGAGTGGAGGCTTAG > 765 AFUA_2G04550 encoded_by_transcript_AFUA_2G04550A MFS_sugar_transporter XP_749587.1 NA MGKRLGLLRAIYLVSASCMGSFAFAFDTGVISGVLTLESFQRDFRYTQAQKTTVNSNAVSILQAGAFFGCFFTTPVASRLGRRTGLIISSLVFTLGTILQVINTHTLGTFYAGRVIAGVGIGAATVLIPMYAAEMSPKEVRGRLGACFQWFFACGVMVAYWVTYAVSKDQPSATKQWQIALGLQLLPSTLLLAGMCTVKESARWLAAQGRTDAAWDSLRWVRGGEETADLRQEFDEILTGLQEEARVRENWTWRELLLPANRYRIFIAVTIQLCAQLTGNTSLAYYATQIFAAVGAGTSAKLVTGFFGVVKVVGVSVFQLLVMDRIGRRVPFMVGAGAMGSFMLIIACVLATHPTKASPGGAETGATTHAGIAMIIMTYAEAFSFNMSWGPLPWLYVGEIFSSRTREVGVTVGAASQWLFNFMMSQVTPHAIENIGWRMFLMFAIFNYSIIGYSWFFLREVSFPSVLVLTSRHSLEEMQNVFGGRPREKSSTDETEPSAKPA bitunicate_ascomycetes Aspergillus_fumigatus_Af293 Aspergillus_fumigatus_Af293 XM_744494 NA Nierman,W.C.,_Pain,A.,_Anderson,M.J.,_Wortman,J.R.,_Kim,H.S.,_Arroyo,J.,_Berriman,M.,_Abe,K.,_Archer,D.B.,_Bermejo,C.,_Bennett,J.,_Bowyer,P.,_Chen,D.,_Collins,M.,_Coulsen,R.,_Davies,R.,_Dyer,P.S.,_Farman,M.,_Fedorova,N.,_Fedorova,N.,_Feldblyum,T.V.,_Fischer,R.,_Fosker,N.,_Fraser,A.,_Garcia,J.L.,_Garcia,M.J.,_Goble,A.,_Goldman,G.H.,_Gomi,K.,_Griffith-Jones,S.,_Gwilliam,R.,_Haas,B.,_Haas,H.,_Harris,D.,_Horiuchi,H.,_Huang,J.,_Humphray,S.,_Jimenez,J.,_Keller,N.,_Khouri,H.,_Kitamoto,K.,_Kobayashi,T.,_Konzack,S.,_Kulkarni,R.,_Kumagai,T.,_Lafon,A.,_Latge,J.P.,_Li,W.,_Lord,A.,_Lu,C.,_Majoros,W.H.,_May,G.S.,_Miller,B.L.,_Mohamoud,Y.,_Molina,M.,_Monod,M.,_Mouyna,I.,_Mulligan,S.,_Murphy,L.,_ONeil,S.,_Paulsen,I.,_Penalva,M.A.,_Pertea,M.,_Price,C.,_Pritchard,B.L.,_Quail,M.A.,_Rabbinowitsch,E.,_Rawlins,N.,_Rajandream,M.A.,_Reichard,U.,_Renauld,H.,_Robson,G.D.,_Rodriguez_de_Cordoba,S.,_Rodriguez-Pena,J.M.,_Ronning,C.M.,_Rutter,S.,_Salzberg,S.L.,_Sanchez,M.,_Sanchez-Ferrero,J.C.,_Saunders,D.,_Seeger,K.,_Squares,R.,_Squares,S.,_Takeuchi,M.,_Tekaia,F.,_Turner,G.,_Vazquez_de_Aldana,C.R.,_Weidman,J.,_White,O.,_Woodward,J.,_Yu,J.H.,_Fraser,C.,_Galagan,J.E.,_Asai,K.,_Machida,M.,_Hall,N.,_Barrell,B._and_Denning,D.W. NA 0:1509 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_007195).COMPLETENESS:_incomplete_on_both_ends. NA 27-FEB-2008 Aspergillus_fumigatus_Af293_MFS_sugar_transporter_(AFUA_2G04550),_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fumigata_Q4WHQ6_ASPFU.gb Aspergillus 70989474 Nature_438_(7071),_1151-1156_(2005) fungi XM_744494 NA NA green_and_blue_molds sac_fungi 16372009 1509 2 mRNA NA Af293 NA Sartorya_fumigata NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 330879 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_sequence_of_the_pathogenic_and_allergenic_filamentous_fungus_Aspergillus_fumigatus NA XM_744494.1 ATGGGCAAAAGACTGGGCCTGCTGCGGGCCATTTATCTGGTGTCGGCCAGTTGCATGGGCTCGTTTGCTTTTGCGTTTGACACTGGGGTAATCAGCGGCGTTCTCACGCTGGAATCCTTCCAAAGGGACTTTCGATATACTCAAGCGCAGAAAACCACCGTCAACTCCAATGCAGTGTCGATTCTTCAGGCCGGCGCGTTTTTCGGATGCTTCTTCACCACCCCGGTGGCCTCGCGGCTCGGTCGCCGGACGGGGCTGATCATCAGCTCGCTGGTGTTCACGCTCGGGACGATCCTGCAGGTCATCAACACGCACACGCTGGGCACCTTTTACGCCGGCCGCGTGATTGCCGGGGTGGGGATCGGGGCCGCGACGGTGCTGATCCCGATGTACGCGGCGGAGATGTCGCCCAAGGAGGTCCGCGGGCGGCTGGGGGCGTGTTTCCAGTGGTTCTTTGCGTGCGGCGTCATGGTCGCGTACTGGGTGACGTACGCGGTGTCCAAGGACCAGCCGTCCGCCACCAAGCAGTGGCAGATCGCGCTGGGGCTGCAGCTGCTGCCGTCGACGTTGCTGCTGGCGGGCATGTGCACGGTCAAGGAGAGCGCGCGGTGGCTAGCGGCCCAGGGACGGACCGACGCCGCGTGGGATTCGCTGCGATGGGTGCGCGGCGGCGAGGAGACGGCCGATCTGCGGCAGGAGTTTGACGAGATCCTCACGGGCTTGCAGGAGGAGGCGCGCGTGCGGGAGAACTGGACGTGGCGCGAGCTGCTGCTGCCCGCCAATCGGTACCGGATCTTCATCGCCGTCACGATCCAGCTGTGTGCGCAGCTGACGGGCAACACCTCGCTGGCGTACTATGCGACCCAGATCTTCGCGGCGGTCGGCGCGGGCACCTCGGCCAAGCTGGTGACGGGATTCTTCGGCGTGGTCAAGGTGGTCGGGGTCAGTGTCTTCCAGCTGTTGGTCATGGATCGGATCGGGCGCAGAGTCCCGTTCATGGTCGGCGCCGGCGCCATGGGCTCCTTTATGCTCATCATCGCGTGTGTGCTGGCGACGCATCCGACGAAAGCGTCCCCCGGGGGTGCGGAGACGGGAGCGACGACGCACGCGGGCATCGCCATGATCATCATGACCTATGCCGAGGCGTTTAGCTTCAACATGTCCTGGGGCCCACTGCCATGGCTGTACGTGGGGGAAATCTTCTCGAGTCGCACGCGCGAGGTGGGAGTGACGGTGGGGGCGGCGTCGCAGTGGCTGTTCAACTTTATGATGTCGCAAGTGACGCCGCACGCGATCGAGAACATTGGATGGCGGATGTTTCTGATGTTTGCCATTTTCAACTATTCCATTATCGGGTATTCATGGTTCTTTTTGCGGGAGGTCAGTTTTCCCTCTGTCCTTGTCCTCACATCCCGCCATTCCCTGGAAGAAATGCAAAATGTGTTTGGGGGAAGGCCTCGGGAAAAGAGCAGCACCGACGAGACAGAGCCGTCAGCCAAGCCGGCTTGA > 766 AFUA_2G10910 encoded_by_transcript_AFUA_2G10910A MFS_alpha-glucoside_transporter XP_755424.1 NA MMASEKAQDAIGPAAEYDPRRDSTASAAKVVHNARAATEKEQRMSLWEGIKTYPKAVGWSLLISTCIAMEGYDICLVNNFYAFPQFNRKYGELTSKGDYQVPARWQAGLSNGAAVGEIIGLFLNGWASERFGYRYTLITCLILITAFTAIFFTAPNVQALLAAEILAGVPWGVFQTLTITYASEVCPVALRGYLTTYVNFCWGLGQLIGVGVIRSMIDRNDEWAYRIPYGLQWMWPVPLLIGILLAPESPWWLVRKGRTREAKKALLRLTTVQEDFDADETIAMMVHTTALEEKITQGASYLDCFKGTDLRRTEIVCMVWAMQNLSGNSFSNYSTYFLEQAGLDTSKAYSFAMGQYGINMAGVFGAWFLMTLGVGRRTLYLCGLCGLCVMLLVMGFLGLVPEAHRDQASLATGSMMICWALVYQLTVGTVAYSLVAELSTRRLQIKTVVLGRNLYNVVGIICGVFTPYMLNPGAWDWGNYTGFFWGGICFLCIIYTYFRVPEPRGRSFAELDLLFERKVSARKFSSTHVDVFDETVESQVVSDYHAQQMAAAGVTQK bitunicate_ascomycetes Aspergillus_fumigatus_Af293 Aspergillus_fumigatus_Af293 XM_750331 NA Nierman,W.C.,_Pain,A.,_Anderson,M.J.,_Wortman,J.R.,_Kim,H.S.,_Arroyo,J.,_Berriman,M.,_Abe,K.,_Archer,D.B.,_Bermejo,C.,_Bennett,J.,_Bowyer,P.,_Chen,D.,_Collins,M.,_Coulsen,R.,_Davies,R.,_Dyer,P.S.,_Farman,M.,_Fedorova,N.,_Fedorova,N.,_Feldblyum,T.V.,_Fischer,R.,_Fosker,N.,_Fraser,A.,_Garcia,J.L.,_Garcia,M.J.,_Goble,A.,_Goldman,G.H.,_Gomi,K.,_Griffith-Jones,S.,_Gwilliam,R.,_Haas,B.,_Haas,H.,_Harris,D.,_Horiuchi,H.,_Huang,J.,_Humphray,S.,_Jimenez,J.,_Keller,N.,_Khouri,H.,_Kitamoto,K.,_Kobayashi,T.,_Konzack,S.,_Kulkarni,R.,_Kumagai,T.,_Lafon,A.,_Latge,J.P.,_Li,W.,_Lord,A.,_Lu,C.,_Majoros,W.H.,_May,G.S.,_Miller,B.L.,_Mohamoud,Y.,_Molina,M.,_Monod,M.,_Mouyna,I.,_Mulligan,S.,_Murphy,L.,_ONeil,S.,_Paulsen,I.,_Penalva,M.A.,_Pertea,M.,_Price,C.,_Pritchard,B.L.,_Quail,M.A.,_Rabbinowitsch,E.,_Rawlins,N.,_Rajandream,M.A.,_Reichard,U.,_Renauld,H.,_Robson,G.D.,_Rodriguez_de_Cordoba,S.,_Rodriguez-Pena,J.M.,_Ronning,C.M.,_Rutter,S.,_Salzberg,S.L.,_Sanchez,M.,_Sanchez-Ferrero,J.C.,_Saunders,D.,_Seeger,K.,_Squares,R.,_Squares,S.,_Takeuchi,M.,_Tekaia,F.,_Turner,G.,_Vazquez_de_Aldana,C.R.,_Weidman,J.,_White,O.,_Woodward,J.,_Yu,J.H.,_Fraser,C.,_Galagan,J.E.,_Asai,K.,_Machida,M.,_Hall,N.,_Barrell,B._and_Denning,D.W. NA 0:1674 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_007195).COMPLETENESS:_incomplete_on_both_ends. NA 27-FEB-2008 Aspergillus_fumigatus_Af293_MFS_alpha-glucoside_transporter,_putative_(AFUA_2G10910),_partial_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neosartorya_fumigata_Q4X179_ASPFU.gb Aspergillus 71001485 Nature_438_(7071),_1151-1156_(2005) fungi XM_750331 NA NA green_and_blue_molds sac_fungi 16372009 1674 2 mRNA NA Af293 NA Sartorya_fumigata NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 330879 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Aspergillus Genomic_sequence_of_the_pathogenic_and_allergenic_filamentous_fungus_Aspergillus_fumigatus NA XM_750331.1 ATGATGGCTTCCGAAAAGGCGCAGGATGCCATTGGGCCAGCGGCGGAGTACGATCCTCGCCGTGATTCTACAGCATCTGCGGCCAAGGTCGTTCACAATGCCAGAGCGGCGACGGAGAAGGAACAACGCATGTCGCTCTGGGAAGGCATCAAGACCTACCCCAAAGCTGTCGGGTGGAGCTTGCTGATCTCCACCTGTATTGCCATGGAGGGCTACGATATCTGCCTCGTCAACAATTTCTATGCCTTCCCGCAATTCAATCGCAAATACGGTGAGCTCACCTCAAAGGGTGACTATCAAGTGCCGGCTCGGTGGCAAGCAGGCCTTAGCAACGGCGCCGCAGTTGGAGAAATCATCGGTCTCTTCCTCAATGGTTGGGCTTCAGAACGTTTCGGATACCGCTATACTCTCATCACCTGTCTCATCTTGATCACCGCTTTCACCGCCATATTTTTCACGGCCCCGAACGTTCAAGCTCTACTTGCGGCCGAAATTCTTGCTGGTGTTCCGTGGGGTGTGTTCCAGACTCTCACAATTACGTATGCTTCGGAAGTGTGTCCTGTCGCTTTGCGTGGCTACCTGACCACCTATGTCAACTTTTGCTGGGGCCTTGGACAGCTGATTGGTGTTGGGGTGATCAGATCAATGATTGATCGTAACGATGAGTGGGCATACCGTATTCCCTACGGTCTGCAGTGGATGTGGCCTGTGCCGTTGCTCATTGGCATCCTCCTCGCCCCGGAATCGCCATGGTGGCTTGTGCGCAAGGGCAGGACCCGGGAGGCTAAGAAGGCCTTGTTACGATTGACCACCGTGCAGGAAGACTTCGATGCTGATGAGACCATTGCTATGATGGTCCACACGACTGCACTGGAAGAGAAGATCACCCAAGGCGCCAGCTACCTCGACTGTTTTAAGGGCACTGACCTGCGCCGAACGGAGATTGTCTGCATGGTATGGGCCATGCAGAACTTGAGCGGCAACTCCTTTTCGAATTACTCTACCTACTTCCTCGAACAGGCCGGCCTGGACACGTCCAAGGCTTATTCTTTCGCCATGGGCCAGTACGGCATCAACATGGCAGGAGTGTTCGGCGCATGGTTCCTCATGACACTGGGCGTTGGACGCAGAACACTGTACCTGTGCGGTCTCTGCGGTCTCTGCGTCATGCTCCTCGTCATGGGCTTCCTCGGTCTGGTACCAGAGGCGCACCGGGACCAGGCATCTCTCGCCACGGGCTCTATGATGATTTGCTGGGCGCTGGTCTACCAGCTGACAGTAGGAACGGTAGCTTACTCTCTCGTTGCTGAGCTCTCCACCCGCCGCCTGCAGATCAAGACCGTTGTGCTCGGCCGCAATCTGTACAATGTCGTGGGTATCATCTGCGGTGTCTTTACGCCGTACATGCTGAACCCGGGAGCTTGGGACTGGGGCAACTATACCGGCTTCTTCTGGGGAGGAATCTGCTTCCTCTGCATCATCTACACTTACTTCCGTGTTCCGGAGCCCAGAGGCCGATCGTTCGCCGAGCTGGACCTTCTGTTCGAGCGTAAGGTCAGCGCAAGAAAGTTCTCCAGTACGCACGTCGATGTCTTCGACGAGACTGTCGAAAGCCAGGTGGTGAGCGACTACCATGCCCAACAGATGGCCGCGGCCGGTGTGACCCAAAAGTAG > 767 NCU08180 similar_to_MFS_monosaccharide_transporter hypothetical_protein XP_959573.1 NA MVLFKRPPDEKGSVWFSVLIGVFVAFGGLLFGYDTGTISGVIAMKYWNERFSTGYIDADGRPAISPSQSSLIVSILSAGTFFGALASPLLADKIGRRWGIIISSWVFNFGVSMQVISVAIPLFVAGRFFAGLGVGLLSALVPLYQSETAPKWIRGMIVGVYQLAITIGILFAAIVNNGTHEREDTGSYRIPIALQWLFSLTLIIGMHFLPETPRYCIKRGDMTRATRALARIRCLSPNDPAILAEMEEIRANYQYELSLGNSSYLDCFRKGMLKRMLTGMVLQILQQLTGVNFIFYYGTQFFENSGISNSFLISMILATVNVLSTVPAVFMFDKFGRRPLLLWGGVAMHICHFIVATLGTSTTSQTATGVIIVLNVAAQKASITFVCLFIAFFAATWGPLAWVVTAELYPLKHRSQMLSISTATNKHVPSFSTPDSVYYHDILGWLVNWAIAYSTPYLVNYGPGYANLQSKIFFVWGTACMLCVGFVYFYIYETKGLSLEEIDEMYQTPNLKAKDSSKWRPSVHFRETPLTEITYHKATGGSPAQAEAAPVAETAERAEREAVPTLPNLTTAPKIGPPPPPPESDDVLKTLQDAVLRPAGAFAHPATLNPAWNSHSPLSAQIAPSNLPSSSLASNRSAPSLGTTPNEGGTSSPHPARRSFGR Sordariomycetes Neurospora_crassa_OR74A Neurospora_crassa_OR74A XM_954480 NA Galagan,J.E.,_Calvo,S.E.,_Borkovich,K.A.,_Selker,E.U.,_Read,N.D.,_Jaffe,D.,_FitzHugh,W.,_Ma,L.J.,_Smirnov,S.,_Purcell,S.,_Rehman,B.,_Elkins,T.,_Engels,R.,_Wang,S.,_Nielsen,C.B.,_Butler,J.,_Endrizzi,M.,_Qui,D.,_Ianakiev,P.,_Bell-Pedersen,D.,_Nelson,M.A.,_Werner-Washburne,M.,_Selitrennikoff,C.P.,_Kinsey,J.A.,_Braun,E.L.,_Zelter,A.,_Schulte,U.,_Kothe,G.O.,_Jedd,G.,_Mewes,W.,_Staben,C.,_Marcotte,E.,_Greenberg,D.,_Roy,A.,_Foley,K.,_Naylor,J.,_Stange-Thomann,N.,_Barrett,R.,_Gnerre,S.,_Kamal,M.,_Kamvysselis,M.,_Mauceli,E.,_Bielke,C.,_Rudd,S.,_Frishman,D.,_Krystofova,S.,_Rasmussen,C.,_Metzenberg,R.L.,_Perkins,D.D.,_Kroken,S.,_Cogoni,C.,_Macino,G.,_Catcheside,D.,_Li,W.,_Pratt,R.J.,_Osmani,S.A.,_DeSouza,C.P.,_Glass,L.,_Orbach,M.J.,_Berglund,J.A.,_Voelker,R.,_Yarden,O.,_Plamann,M.,_Seiler,S.,_Dunlap,J.,_Radford,A.,_Aramayo,R.,_Natvig,D.O.,_Alex,L.A.,_Mannhaupt,G.,_Ebbole,D.J.,_Freitag,M.,_Paulsen,I.,_Sachs,M.S.,_Lander,E.S.,_Nusbaum,C._and_Birren,B. NA 0:1989 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001849779).COMPLETENESS:_incomplete_on_both_ends. NA 10-APR-2008 Neurospora_crassa_OR74A_hypothetical_protein_NCU08180_partial_mRNA. NA Sordariaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neurospora_crassa_Q7S4B3_NEUCR.gb Neurospora 85092844 Nature_422_(6934),_859-868_(2003) fungi XM_954480 NA NA pyrenonmycetes sac_fungi 12712197 1989 VII mRNA NA OR74A NA Neurospora_crassa_Shear_&_B._O._Dodge_1927 NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 367110 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Sordariaceae,_Neurospora The_genome_sequence_of_the_filamentous_fungus_Neurospora_crassa NA XM_954480.1 ATGGTTCTATTCAAGCGCCCTCCCGATGAGAAGGGGTCCGTATGGTTCTCCGTTCTGATCGGCGTCTTCGTGGCCTTTGGCGGTCTTCTTTTTGGCTATGACACCGGCACCATCAGCGGCGTCATTGCCATGAAATATTGGAACGAGCGTTTCTCCACTGGCTACATCGATGCTGATGGGAGGCCGGCCATTAGCCCGTCCCAATCTTCCCTCATTGTGTCTATCCTTTCGGCTGGTACCTTCTTCGGTGCTTTGGCTTCTCCCTTGCTGGCGGATAAGATTGGTCGGCGATGGGGTATCATCATATCCTCTTGGGTCTTCAACTTTGGCGTGTCCATGCAAGTAATTTCTGTCGCCATTCCTCTGTTTGTAGCCGGGAGATTCTTTGCCGGCCTTGGAGTTGGCCTGCTTTCGGCTCTTGTCCCGCTCTATCAATCCGAGACCGCCCCCAAATGGATCCGTGGAATGATCGTAGGCGTATATCAACTTGCAATCACCATCGGCATCCTTTTCGCCGCCATAGTCAATAATGGCACTCATGAACGGGAGGACACCGGCTCGTACAGAATTCCCATTGCTCTCCAGTGGCTCTTCTCGCTCACTCTCATCATTGGCATGCACTTCCTTCCCGAAACTCCCAGGTATTGCATCAAGCGAGGCGACATGACCCGTGCCACCCGAGCCCTGGCCAGAATCCGCTGCCTGTCGCCCAATGATCCCGCCATCCTTGCGGAGATGGAAGAGATCCGTGCAAACTACCAATATGAACTGTCACTCGGTAACAGCAGCTACCTGGACTGCTTCCGTAAGGGCATGTTGAAGAGGATGCTCACAGGCATGGTACTTCAAATCCTGCAGCAACTTACCGGCGTCAACTTCATTTTTTACTACGGTACTCAATTCTTCGAGAACTCGGGCATCTCGAATTCCTTCTTGATTAGTATGATCCTAGCCACAGTCAACGTTCTCTCGACGGTCCCCGCTGTCTTCATGTTCGACAAGTTCGGTCGCCGCCCTTTACTCTTGTGGGGTGGTGTAGCCATGCACATATGCCACTTTATCGTCGCTACACTCGGTACATCGACAACGAGTCAGACTGCCACCGGGGTCATTATCGTGCTCAACGTTGCTGCTCAAAAAGCATCAATCACTTTTGTGTGCTTGTTCATTGCCTTCTTCGCCGCAACATGGGGTCCCTTGGCGTGGGTGGTAACTGCAGAATTGTACCCACTGAAGCATCGGTCGCAGATGTTGAGCATTAGCACAGCTACAAACAAACATGTTCCTTCATTTTCAACTCCGGATTCTGTCTACTACCATGACATTCTGGGGTGGTTAGTAAACTGGGCCATCGCCTACTCGACTCCTTACCTCGTCAACTATGGTCCCGGGTACGCAAACCTCCAGTCAAAGATCTTCTTCGTCTGGGGTACGGCCTGCATGCTCTGCGTCGGCTTTGTCTACTTTTACATCTATGAGACAAAGGGTCTATCTCTGGAGGAGATCGACGAAATGTACCAGACACCAAATCTCAAGGCTAAGGACAGCAGCAAGTGGCGGCCGAGCGTCCATTTCCGAGAAACCCCGCTCACGGAGATCACATACCACAAGGCTACTGGTGGAAGTCCTGCTCAGGCCGAGGCTGCTCCAGTAGCTGAGACCGCGGAGAGAGCTGAGCGCGAGGCTGTTCCTACCCTTCCTAATCTTACTACAGCTCCCAAGATTGGGCCTCCTCCTCCTCCTCCTGAAAGTGACGATGTCCTGAAGACTCTGCAAGACGCTGTCCTTCGTCCTGCAGGAGCTTTCGCCCACCCTGCTACGCTGAACCCGGCCTGGAATTCCCATTCTCCCTTGTCCGCACAAATTGCGCCGTCGAATCTTCCGTCTTCCTCTCTTGCTTCCAACAGGTCTGCCCCGTCCCTGGGCACGACTCCCAACGAAGGTGGAACTAGTTCACCCCACCCAGCGCGAAGAAGCTTCGGGCGTTGA > 768 NCU02188 NA hypothetical_protein XP_959582.2 NA MSAIVVTDQYLTYFNNPHDIIQGAIGSALAAGSVVGSAIAGPLSDKIGRRDSIFFACFFWLIGTSVQVACKNYGQLIAGRVLNGFTVGITSSQVPVYLAEIAKAEKRGSLVIIQQLAIEFGILIMYFIGYGCASIEGPASFRTAWGIQFIPCFFLMVGLPFLPRSPRWLAKVGRDQEAIAVLANIQADGNVDDPRVVAEWEEIVTVMNAEREAGKGWRKFVKNGMWKRTMAGMTVQAWQQLAGANVIVYYLTYIAQMAGLTGNVAMVTSGIQYAVFIIFTGVMWLFIDKTGRRTLLVYGALGMAFCHFVVGGVMGAHHDNVPDGVGGNANIVISVHKGAPANTVILFSYLLIVVYALTLAPVCWIYAAEVWSLGTRATGMSMAAMSNWVFNFALGMFTPPAFVNITWKLFIIFGVLCVTAAVWFWLFYPETCGKTLEEIEILFGDQGPKPWKTKKGESRLTAEIEAVKARKTVEHEIEVHEHEKV Sordariomycetes Neurospora_crassa_OR74A Neurospora_crassa_OR74A XM_954489 NA Galagan,J.E.,_Calvo,S.E.,_Borkovich,K.A.,_Selker,E.U.,_Read,N.D.,_Jaffe,D.,_FitzHugh,W.,_Ma,L.J.,_Smirnov,S.,_Purcell,S.,_Rehman,B.,_Elkins,T.,_Engels,R.,_Wang,S.,_Nielsen,C.B.,_Butler,J.,_Endrizzi,M.,_Qui,D.,_Ianakiev,P.,_Bell-Pedersen,D.,_Nelson,M.A.,_Werner-Washburne,M.,_Selitrennikoff,C.P.,_Kinsey,J.A.,_Braun,E.L.,_Zelter,A.,_Schulte,U.,_Kothe,G.O.,_Jedd,G.,_Mewes,W.,_Staben,C.,_Marcotte,E.,_Greenberg,D.,_Roy,A.,_Foley,K.,_Naylor,J.,_Stange-Thomann,N.,_Barrett,R.,_Gnerre,S.,_Kamal,M.,_Kamvysselis,M.,_Mauceli,E.,_Bielke,C.,_Rudd,S.,_Frishman,D.,_Krystofova,S.,_Rasmussen,C.,_Metzenberg,R.L.,_Perkins,D.D.,_Kroken,S.,_Cogoni,C.,_Macino,G.,_Catcheside,D.,_Li,W.,_Pratt,R.J.,_Osmani,S.A.,_DeSouza,C.P.,_Glass,L.,_Orbach,M.J.,_Berglund,J.A.,_Voelker,R.,_Yarden,O.,_Plamann,M.,_Seiler,S.,_Dunlap,J.,_Radford,A.,_Aramayo,R.,_Natvig,D.O.,_Alex,L.A.,_Mannhaupt,G.,_Ebbole,D.J.,_Freitag,M.,_Paulsen,I.,_Sachs,M.S.,_Lander,E.S.,_Nusbaum,C._and_Birren,B. NA 0:1458 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001849818).On_Jan_3,_2008_this_sequence_version_replaced_gi:85092884.COMPLETENESS:_incomplete_on_both_ends. NA 10-APR-2008 Neurospora_crassa_OR74A_hypothetical_protein_partial_mRNA. NA Sordariaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neurospora_crassa_Q7S4D2_NEUCR.gb Neurospora 164426944 Nature_422_(6934),_859-868_(2003) fungi XM_954489 NA NA pyrenonmycetes sac_fungi 12712197 1458 VII mRNA NA OR74A NA Neurospora_crassa_Shear_&_B._O._Dodge_1927 NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 367110 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Sordariaceae,_Neurospora The_genome_sequence_of_the_filamentous_fungus_Neurospora_crassa NA XM_954489.2 ATGTCCGCCATCGTCGTGACCGACCAATACCTCACCTACTTCAACAACCCCCATGATATCATCCAAGGAGCCATCGGCTCTGCCCTTGCTGCTGGCTCCGTCGTCGGTTCCGCCATCGCCGGTCCTCTTTCCGACAAGATCGGTCGTCGTGACTCCATCTTTTTCGCCTGCTTCTTCTGGCTCATTGGTACCTCCGTCCAGGTTGCCTGCAAGAACTATGGCCAGCTCATCGCCGGCCGTGTGCTCAACGGCTTTACCGTCGGCATCACTTCCTCCCAGGTTCCCGTGTACCTTGCCGAGATCGCCAAGGCAGAGAAGCGTGGTTCCTTGGTCATCATCCAGCAACTCGCCATCGAGTTTGGTATCTTGATCATGTACTTTATCGGCTACGGCTGTGCGTCGATCGAGGGCCCTGCTTCGTTCCGGACCGCTTGGGGCATTCAGTTTATCCCTTGCTTTTTCCTCATGGTCGGTCTTCCCTTCTTGCCTAGGTCGCCCAGATGGCTGGCCAAGGTCGGTAGGGACCAGGAGGCCATTGCTGTCCTGGCTAACATCCAGGCTGATGGCAACGTTGATGACCCGAGAGTCGTTGCTGAGTGGGAGGAGATTGTCACCGTTATGAACGCCGAGCGTGAGGCCGGTAAGGGATGGAGGAAGTTTGTCAAGAACGGCATGTGGAAGCGAACCATGGCTGGCATGACTGTACAGGCTTGGCAGCAACTCGCCGGCGCCAACGTAATCGTCTACTACCTAACCTACATCGCCCAAATGGCCGGACTCACAGGCAACGTCGCCATGGTAACCTCGGGCATCCAATACGCCGTTTTCATCATCTTCACCGGCGTCATGTGGCTCTTCATCGACAAGACCGGTCGTCGCACCCTTTTAGTTTACGGCGCCTTGGGAATGGCCTTCTGCCACTTTGTCGTCGGCGGCGTCATGGGCGCGCACCACGACAACGTTCCGGACGGCGTCGGCGGCAACGCCAACATTGTCATTAGCGTGCACAAGGGCGCGCCCGCCAACACGGTCATCCTGTTCTCGTACCTGCTCATTGTCGTCTACGCCTTGACGCTCGCTCCCGTCTGCTGGATCTACGCCGCCGAGGTCTGGTCGTTGGGCACTCGCGCTACGGGCATGTCCATGGCTGCCATGTCCAACTGGGTGTTCAACTTTGCGCTGGGCATGTTCACGCCGCCGGCGTTTGTCAATATTACGTGGAAGCTGTTTATCATTTTCGGGGTGCTTTGCGTCACGGCGGCGGTCTGGTTCTGGTTGTTTTACCCGGAGACGTGTGGTAAGACGCTGGAGGAGATTGAGATCCTGTTTGGTGATCAGGGTCCTAAGCCGTGGAAGACGAAGAAGGGCGAGTCGAGACTTACGGCGGAGATTGAGGCTGTCAAGGCGAGGAAGACGGTGGAGCACGAGATTGAGGTGCATGAGCATGAGAAGGTTTAG > 769 NCU06522 similar_to_maltose_permease hypothetical_protein XP_961779.1 NA MADQKPLTSSPEEATEAGTTTTTTIPQAQIQDDVVLVEAKHAADTEHEMTLLRAIQLYPKAIGWSVLLSSTLIMEGYDLALLGSLYASPVFNKKFGELNPATGKYAVSAAWQSGLSNGARAGEIFGLIFAGWAADRIGYKKTTIASLVLMITFIFVLFFAPNVKVLVVGEVLCGIPWGAFQSVTPAYASEVAPMVLRPYLTTFINMCWVIGQFFAAAVNKGSVGRTDQWAYRIPFGVQWVWPIPILAGLVFAPESPWWYVRHDRREEAKQSLLRLTSRNQPGFNVDETLAMIEHTNELEKQMKEGVTFRDCFRGVDLRRTEIVVGIWLVQTLGGQNLMGYFSYFLTQAGMDPSNSFSLSMGQYALGMVGTAGSWFLMSRVGRRRIHFSGLCAQFCLLAIVGCLSFGGNKASVWAIGGVLVAFTFVYDFAVGPVTYCLISELSSTRLKAKTIVLARAAYNASNIFVNVMTNYQLSSTAWNWGARTAFFWAGSCLLSAIWVFFRLPEPKGRTYAELDILFEKKVTARKFRKTKVDPFDLRSHGEKKMSLEKMESHEGKEIEA Sordariomycetes Neurospora_crassa_OR74A Neurospora_crassa_OR74A XM_956686 NA Galagan,J.E.,_Calvo,S.E.,_Borkovich,K.A.,_Selker,E.U.,_Read,N.D.,_Jaffe,D.,_FitzHugh,W.,_Ma,L.J.,_Smirnov,S.,_Purcell,S.,_Rehman,B.,_Elkins,T.,_Engels,R.,_Wang,S.,_Nielsen,C.B.,_Butler,J.,_Endrizzi,M.,_Qui,D.,_Ianakiev,P.,_Bell-Pedersen,D.,_Nelson,M.A.,_Werner-Washburne,M.,_Selitrennikoff,C.P.,_Kinsey,J.A.,_Braun,E.L.,_Zelter,A.,_Schulte,U.,_Kothe,G.O.,_Jedd,G.,_Mewes,W.,_Staben,C.,_Marcotte,E.,_Greenberg,D.,_Roy,A.,_Foley,K.,_Naylor,J.,_Stange-Thomann,N.,_Barrett,R.,_Gnerre,S.,_Kamal,M.,_Kamvysselis,M.,_Mauceli,E.,_Bielke,C.,_Rudd,S.,_Frishman,D.,_Krystofova,S.,_Rasmussen,C.,_Metzenberg,R.L.,_Perkins,D.D.,_Kroken,S.,_Cogoni,C.,_Macino,G.,_Catcheside,D.,_Li,W.,_Pratt,R.J.,_Osmani,S.A.,_DeSouza,C.P.,_Glass,L.,_Orbach,M.J.,_Berglund,J.A.,_Voelker,R.,_Yarden,O.,_Plamann,M.,_Seiler,S.,_Dunlap,J.,_Radford,A.,_Aramayo,R.,_Natvig,D.O.,_Alex,L.A.,_Mannhaupt,G.,_Ebbole,D.J.,_Freitag,M.,_Paulsen,I.,_Sachs,M.S.,_Lander,E.S.,_Nusbaum,C._and_Birren,B. NA 0:1683 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001849802).COMPLETENESS:_incomplete_on_both_ends. NA 10-APR-2008 Neurospora_crassa_OR74A_hypothetical_protein_NCU06522_partial_mRNA. NA Sordariaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neurospora_crassa_Q7S871_NEUCR.gb Neurospora 85104644 Nature_422_(6934),_859-868_(2003) fungi XM_956686 NA NA pyrenonmycetes sac_fungi 12712197 1683 IV mRNA NA OR74A NA Neurospora_crassa_Shear_&_B._O._Dodge_1927 NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 367110 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Sordariaceae,_Neurospora The_genome_sequence_of_the_filamentous_fungus_Neurospora_crassa NA XM_956686.1 ATGGCGGACCAAAAACCCCTTACCTCTTCGCCTGAAGAGGCCACAGAGGCGGGCACCACTACCACTACCACCATCCCCCAAGCCCAAATCCAAGACGACGTCGTCCTCGTCGAAGCCAAACACGCCGCCGACACCGAGCACGAAATGACCCTCCTCCGCGCCATCCAGCTCTACCCCAAAGCCATCGGCTGGTCCGTCCTACTCTCTTCGACCTTGATCATGGAGGGCTACGACCTCGCCCTCCTGGGGAGCTTATACGCCTCCCCCGTTTTCAACAAGAAATTCGGCGAGCTCAACCCGGCCACGGGCAAGTACGCCGTCTCTGCTGCTTGGCAGTCGGGTCTGTCCAACGGGGCAAGAGCCGGAGAGATTTTTGGCTTGATCTTTGCTGGATGGGCGGCTGATCGGATCGGGTACAAGAAGACGACGATTGCGAGTCTGGTGTTGATGATTACCTTTATTTTTGTCTTGTTTTTTGCGCCGAATGTGAAGGTGTTGGTGGTTGGGGAGGTTCTTTGTGGTATCCCCTGGGGTGCCTTTCAGAGCGTTACACCCGCCTATGCCTCCGAGGTTGCGCCGATGGTGCTTCGCCCGTACCTGACAACCTTCATCAACATGTGCTGGGTAATTGGCCAGTTCTTCGCTGCCGCCGTCAACAAGGGCTCCGTGGGCCGGACTGATCAGTGGGCGTACAGGATTCCCTTTGGCGTGCAGTGGGTGTGGCCAATTCCCATCCTCGCCGGGCTCGTCTTTGCTCCCGAGTCGCCTTGGTGGTATGTCCGACATGACAGGAGGGAGGAGGCCAAGCAGTCGCTCCTCCGTTTGACTTCGAGGAATCAACCCGGGTTCAACGTGGACGAGACGCTGGCTATGATTGAGCATACCAACGAGCTCGAGAAGCAGATGAAGGAGGGTGTCACTTTCCGCGACTGCTTCAGGGGTGTTGATCTTCGCCGTACGGAGATCGTCGTGGGCATTTGGCTTGTCCAGACCCTCGGCGGCCAGAACCTGATGGGTTACTTCTCCTACTTCCTCACGCAAGCCGGCATGGACCCGAGCAACTCGTTCTCGCTCTCCATGGGCCAGTACGCCCTCGGTATGGTCGGCACCGCCGGGTCGTGGTTCCTCATGTCACGCGTCGGCCGTCGACGCATCCATTTTAGCGGTCTCTGCGCGCAGTTCTGTCTGCTCGCCATCGTCGGCTGTCTCTCCTTTGGCGGAAACAAGGCCTCTGTGTGGGCCATCGGCGGCGTACTCGTCGCGTTCACGTTCGTCTACGACTTTGCTGTCGGTCCGGTGACGTACTGTCTCATCTCCGAGCTGTCGTCAACTCGTCTAAAGGCCAAGACCATCGTGCTTGCCCGTGCAGCGTACAATGCTAGTAACATCTTTGTCAATGTAATGACGAATTACCAGCTGAGCTCGACGGCGTGGAATTGGGGCGCTAGGACGGCGTTCTTCTGGGCGGGCAGCTGCTTGTTGTCGGCTATATGGGTGTTCTTTAGACTGCCGGAGCCGAAGGGGAGGACATATGCCGAGTTGGATATTTTGTTTGAGAAGAAGGTGACAGCGAGGAAGTTTAGGAAGACCAAAGTTGATCCTTTTGACTTGCGCAGTCATGGCGAGAAGAAGATGTCGCTTGAGAAGATGGAGAGTCATGAGGGGAAGGAAATCGAGGCTTAA > 770 NCU05350 NA hypothetical_protein XP_963341.2 NA MGSKITETWLTKTFLTSIFLGLGGFLYGFDSGIITPSLALNSFLEYFGNPDAPIRGAIVSVYQAGVCAWGFFVALWTGVGEGKWHNPNQWRLGFAVQSIPALALGVGVLFIKESPRWLCLKSRHAEAEKAFRSYHHNGSNDEWCREEFRHLQANIAIELQARGCLSWAELLKAPAFRKRLFVGSFVWAAAMLSGISFIQYFQPAIYATLQYNQDQQLLISGLPEVFTTELRGKANAVIQILQYSISLVITQWKSLEDMSEIFGDIKRRTEPELDEVHSSPSGKKDSEISEYAIEKTESKYHRDRRSDIFRSISVSRVNPNVEYMKDQRKGFTFHSLAQPALVGMLTAVAIAPSALVTRKVQLPIDTIVEDYMACVEMDEKKRVHRE Sordariomycetes Neurospora_crassa_OR74A Neurospora_crassa_OR74A XM_958248 NA Galagan,J.E.,_Calvo,S.E.,_Borkovich,K.A.,_Selker,E.U.,_Read,N.D.,_Jaffe,D.,_FitzHugh,W.,_Ma,L.J.,_Smirnov,S.,_Purcell,S.,_Rehman,B.,_Elkins,T.,_Engels,R.,_Wang,S.,_Nielsen,C.B.,_Butler,J.,_Endrizzi,M.,_Qui,D.,_Ianakiev,P.,_Bell-Pedersen,D.,_Nelson,M.A.,_Werner-Washburne,M.,_Selitrennikoff,C.P.,_Kinsey,J.A.,_Braun,E.L.,_Zelter,A.,_Schulte,U.,_Kothe,G.O.,_Jedd,G.,_Mewes,W.,_Staben,C.,_Marcotte,E.,_Greenberg,D.,_Roy,A.,_Foley,K.,_Naylor,J.,_Stange-Thomann,N.,_Barrett,R.,_Gnerre,S.,_Kamal,M.,_Kamvysselis,M.,_Mauceli,E.,_Bielke,C.,_Rudd,S.,_Frishman,D.,_Krystofova,S.,_Rasmussen,C.,_Metzenberg,R.L.,_Perkins,D.D.,_Kroken,S.,_Cogoni,C.,_Macino,G.,_Catcheside,D.,_Li,W.,_Pratt,R.J.,_Osmani,S.A.,_DeSouza,C.P.,_Glass,L.,_Orbach,M.J.,_Berglund,J.A.,_Voelker,R.,_Yarden,O.,_Plamann,M.,_Seiler,S.,_Dunlap,J.,_Radford,A.,_Aramayo,R.,_Natvig,D.O.,_Alex,L.A.,_Mannhaupt,G.,_Ebbole,D.J.,_Freitag,M.,_Paulsen,I.,_Sachs,M.S.,_Lander,E.S.,_Nusbaum,C._and_Birren,B. NA 0:1161 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001849800).On_Jan_3,_2008_this_sequence_version_replaced_gi:85068328.COMPLETENESS:_incomplete_on_both_ends. NA 10-APR-2008 Neurospora_crassa_OR74A_hypothetical_protein_partial_mRNA. NA Sordariaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neurospora_crassa_Q7SC74_NEUCR.gb Neurospora 164424780 Nature_422_(6934),_859-868_(2003) fungi XM_958248 NA NA pyrenonmycetes sac_fungi 12712197 1161 II mRNA NA OR74A NA Neurospora_crassa_Shear_&_B._O._Dodge_1927 NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 367110 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Sordariaceae,_Neurospora The_genome_sequence_of_the_filamentous_fungus_Neurospora_crassa NA XM_958248.2 ATGGGAAGCAAGATCACAGAAACATGGCTCACAAAAACATTCTTGACTTCGATCTTCCTAGGACTCGGCGGTTTTCTCTACGGCTTTGACTCGGGTATCATCACTCCAAGTCTCGCTCTGAACTCATTTCTGGAATACTTCGGGAATCCCGATGCACCTATCCGAGGAGCTATTGTGTCAGTCTACCAGGCAGGTGTGTGTGCTTGGGGCTTCTTTGTCGCGCTTTGGACAGGAGTAGGGGAAGGCAAGTGGCATAACCCCAACCAGTGGAGGCTCGGTTTCGCTGTCCAGAGCATCCCTGCTCTCGCCCTTGGGGTTGGAGTCCTTTTCATCAAAGAGTCGCCAAGATGGCTTTGCCTGAAAAGCCGTCATGCAGAAGCCGAGAAAGCCTTTCGCAGCTATCACCATAACGGCTCCAACGATGAGTGGTGCAGAGAGGAGTTCAGGCATTTACAAGCCAATATTGCAATCGAGCTGCAAGCTCGAGGCTGTCTTTCCTGGGCAGAGCTCCTCAAGGCGCCGGCCTTCAGGAAACGTCTTTTTGTCGGATCCTTTGTGTGGGCGGCTGCGATGTTGAGCGGCATCAGCTTTATCCAATATTTCCAACCAGCCATCTATGCAACACTGCAGTATAACCAGGACCAGCAGCTTCTCATCAGCGGGCTGCCCGAGGTCTTCACCACCGAGTTGAGAGGCAAGGCAAATGCCGTTATCCAAATCCTGCAATATTCCATCAGCTTGGTTATAACCCAATGGAAATCGCTTGAAGACATGAGCGAGATCTTCGGCGATATCAAGCGAAGGACGGAACCAGAGCTTGACGAAGTCCATTCAAGTCCCTCGGGCAAGAAAGACAGCGAAATCAGCGAGTATGCCATCGAGAAGACGGAGTCGAAGTATCACCGAGACCGAAGATCGGATATCTTTAGGTCGATCTCAGTATCGAGAGTAAACCCCAACGTCGAGTACATGAAGGATCAAAGGAAGGGCTTCACTTTCCATTCCCTGGCCCAGCCAGCTCTGGTTGGCATGTTGACTGCCGTTGCCATCGCCCCCTCTGCCCTCGTCACCCGCAAGGTCCAGCTCCCCATTGACACCATCGTCGAGGACTACATGGCTTGCGTTGAGATGGACGAGAAGAAGCGAGTACATCGAGAATGA > 771 NA similarity_to_myo-inositol_transport_protein_ITR1,_YDR497c,_Saccharomyces_cerevisiae,_PIR:S69555;_Contains_Sugar_transport_proteins_signatures_AMYTIDTFGRRNLLLT related_to_myo-inositol_transport_protein_ITR1 CAB99236.1 NA MASNPTNTAAPTGGLTEKKHDRRSTSSESVSGTGFAEHADRTGTFNQNARLEASKKIANPLAGLSPQRLEAMGEEYAMMAGLTSEEDIRAFRLGARIAGDESNYDLIPELTEREKEECSSMMLTTILQVCSLCAAVQGMDETVVNGAQLFYKDKFGIGTDSQRDTWLLGLVNSAPYLCCALIGCWLTEPMNRIFGRRGTIFVSCIISAVACFHQAFTNTWWHMFIARFYLGLGIGPKSATTPIFAAECSPPKLRGALVMQWQMWTAFGIMVGYIADLAFYFVPDHGIGLGLNWRLMMGSAMIPAVIVVCLAFLCPESPRWYLSKGRHQDAFGALCRLRFEKVQAARDLFYTHTLLEAEKQAMSGVKKGNRFKELFTVRRNRNAVIASSGLMFMQQFCGVNIIAYYSSAVFRDAGFSDVSALAASLGFGVVNWLFAIPAMYTIDTFGRRNLLLTTFPLMSLFLFFTGFSFWIPEDSKAHIGCIALGIYLFGMVYSPGEGPVPFTYSAEAYPLYIRPIGMSLATATTWFFNFILSITWPRMVTAFKPQGAFGWYAGWNIIGFLFTLFLVPETKGKTLEELDHVFDVPLKKLVRYGADQSLWFFHRGKNGNGMRPTAPSAEMYHGDAERMNEVVSGQQLGEGEREKRWNKEQEREGGIMGRGDAAGKV Sordariomycetes Neurospora_crassa Neurospora_crassa AL390218 11712..13361 Schulte,U.,_Aign,V.,_Hoheisel,J.,_Brandt,P.,_Fartmann,B.,_Holland,R.,_Nyakatura,G.,_Mewes,H.W._and_Mannhaupt,G. NA 0:>1650 BAC_clone_7N4_(strain_OR74A)_is_available_at_the_Fungal_GeneticStock_Center,_http://www.fgsc.netSequencing_was_performed_by_MWG_Biotech_AG,_Ebersberg,_Germany,http://www.mwgdna.comInformation_on_performance_of_analysis_and_a_more_detailedannotation_of_this_entry_and_other_sequences_of_linkage_groups_IIand_V_can_be_viewed_at:_http://mips.gsf.de/proj/neurospora. NA 14-NOV-2006 Neurospora_crassa_DNA_linkage_group_II_BAC_clone_B7N4. NA Sordariaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Neurospora_crassa_Q9P3B9_NEUCR.gb Neurospora 9369310 Unpublished fungi AL390218 NA NA pyrenonmycetes sac_fungi NA 1650 6 genomic_DNA NA NA NA Neurospora_crassa_Shear_&_B._O._Dodge_1927 NA complement Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5141 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Sordariaceae,_Neurospora NA NA AL390218.1 CTACACCTTCCCAGCAGCATCCCCTCGTCCCATAATCCCCCCTTCCCTCTCTTGTTCCTTGTTCCACCTCTTCTCCCTCTCACCCTCCCCAAGCTGCTGCCCGCTAACCACCTCGTTCATCCGCTCCGCATCCCCATGATACATCTCCGCACTAGGCGCCGTCGGCCTCATTCCATTTCCATTCTTTCCCCTATGGAAGAACCACAAGCTCTGATCTGCCCCATACCTGACCAACTTCTTCAACGGCACGTCAAACACGTGATCGAGCTCCTCCAGCGTCTTGCCCTTGGTCTCGGGGACCAAGAACAGGGTAAAGAGAAACCCAATGATATTCCACCCTGCATACCAGCCAAACGCGCCCTGCGGCTTGAAGGCCGTGACCATCCTAGGCCAGGTGATGGAAAGAATGAAATTGAAGAACCAGGTAGTCGCCGTGGCGAGGGACATGCCGATTGGCCGGATGTACAGCGGGTAGGCTTCGGCCGAGTAAGTAAACGGCACCGGCCCTTCACCGGGGGAGTAGACCATGCCGAACAAGTAAATGCCTAGCGCGATGCAGCCGATGTGGGCTTTGGAGTCCTCGGGGATCCAAAAGCTGAAGCCGGTAAAGAAGAGGAAGAGGGACATGAGCGGGAAGGTGGTCAGCAGCAGGTTGCGCCGGCCGAAAGTGTCGATGGTGTACATGGCCGGGATGGCAAACAGCCAGTTGACGACGCCAAACCCGAGCGAGGCGGCCAGTGCTGAGACGTCGCTGAAGCCGGCGTCTCGGAAGACTGCCGAGGAGTAGTAGGCGATGATGTTGACGCCGCAGAACTGCTGCATGAACATGAGTCCCGACGAGGCAATGACCGCGTTGCGGTTACGACGCACGGTGAAGAGCTCCTTAAAGCGGTTACCCTTCTTGACGCCCGACATGGCTTGCTTCTCGGCTTCGAGGAGGGTGTGGGTGTAGAAGAGGTCGCGGGCGGCTTGGACCTTTTCGAAACGCAGGCGGCAGAGCGCCCCGAAGGCGTCTTGGTGTCGGCCCTTGCTGAGATACCAACGGGGCGACTCCGGGCAGAGGAAGGCGAGGCAGACGACGATGACGGCGGGGATCATGGCGGAGCCCATCATCAGACGCCAGTTCAGACCCAGGCCGATGCCGTGATCGGGAACGAAGTAGAAAGCGAGATCGGCAATGTAGCCGACCATGATACCGAAGGCGGTCCACATCTGCCATTGCATGACCAGCGCACCGCGGAGCTTGGGAGGGGAGCATTCGGCGGCGAAGATGGGGGTGGTGGCTGACTTGGGACCGATGCCAAGGCCGAGGTAGAAACGGGCGATGAACATGTGCCACCACGTGTTGGTAAAGGCCTGGTGGAAGCAGGCTACGGCTGAGATGATGCAAGAAACAAAGATGGTGCCTCGTCTGCCAAAGATTCTGTTCATCGGTTCAGTGAGCCAGCAGCCGATCAAGGCACAGCAAAGGTAGGGCGCTGAGTTGACGAGACCCAGAAGCCAGGTGTCTCTCTGGCTATCGGTACCAATGCCAAACTTGTCCTTGTAGAAGAGCTGGGCGCCGTTGACGACCGTCTCGTCCATTCCTTGGACGGCGGCGCATAGAGAGCAAACTTGAAGTATGGTGGTTAGCATCATACTGCTGCACTC > 772 nfa20440 NA transporter YP_118254.1 11 MTAVNSPQLAPAETRERPMKLAIASGVGTILEFYDFAIYGTATALVFNKVYFDTDDPWFGTFLGFATFAIGFVMAPVGAVIFGHYGDRFGRRAALTTAFILMGSATLVMGLVPDSRSIGIVAPMILIFLRMLHGISRGGEIGGAVLLAAEHAPASRRGLYGCFVTLGSPVGAILANTAFALVLLLPMDQVIAWGWRIPFLVGGVVLIIGIWTRMRISETPDFAGARSGADRPAPRGLAVLRQDWRGVLRAAGVNIGQNCYAFLLFTFMLSFLTEPDPGRGFSRSAVVWGITAALACHAATVVLGSHLSDRLGRKTVIGFGMTSAAVFAPVLFWVTAHGSFLACIAVICIGFTLTGFVYGPMFTMFAEQFPVTQRYSGVGIGYQVGAVVGGGIAPMVANRIVSGTGSVIPVGFYAAALMLISLFALMKGKETAPLAVGRSVRSRFGAAAGSTDRAARAGFPADAKPVEQSS high_GC_Gram+ Nocardia_farcinica_IFM_10152 Nocardia_farcinica_IFM_10152 NC_006361 2223649..2225061 Ishikawa,J.,_Yamashita,A.,_Mikami,Y.,_Hoshino,Y.,_Kurita,H.,_Hotta,K.,_Shiba,T._and_Hattori,M. NA 0:1413 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AP006618.COMPLETENESS:_full_length. NA 21-JAN-2012 Nocardia_farcinica_IFM_10152_chromosome,_complete_genome. NA Nocardiaceae_Castellani_and_Chalmers_1919_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nocardia_farcinica_Q5YY51_NOCFA.gb Nocardia_Trevisan_1889 54021964 Proc._Natl._Acad._Sci._U.S.A._101_(41),_14925-14930_(2004) NA NC_006361 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 15466710 1413 NA genomic_DNA NA IFM_10152 NA Streptothrix_nocardii NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 247156 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Nocardiaceae,_Nocardia The_complete_genomic_sequence_of_Nocardia_farcinica_IFM_10152 NA NC_006361.1 TCAGCTGGATTGCTCCACCGGTTTCGCGTCGGCGGGAAAACCGGCGCGCGCTGCCCGGTCGGTGCTGCCCGCGGCGGCGCCGAAGCGGCTCCGCACCGAGCGCCCGACCGCCAGCGGCGCGGTCTCCTTGCCCTTCATCAGGGCGAACAGGCTGATCAGCATGAGTGCCGCGGCATAGAACCCGACGGGGATCACGCTGCCGGTGCCGCTCACGATCCGGTTCGCGACCATCGGCGCGATACCGCCGCCGACCACCGCCCCGACCTGGTAGCCGATGCCCACACCGCTGTAGCGCTGGGTCACCGGGAACTGCTCGGCGAACATGGTGAACATCGGCCCGTACACGAACCCGGTCAGCGTGAACCCGATGCAGATCACCGCGATACAGGCCAGGAACGAACCGTGGGCGGTGACCCAGAACAGCACCGGGGCGAAGACCGCGGCCGACGTCATACCGAAGCCGATCACCGTCTTGCGGCCGAGCCGGTCGGACAGATGACTGCCGAGCACCACCGTCGCGGCATGGCAGGCGAGGGCGGCGGTGATGCCCCAGACCACCGCGGAGCGGGAGAAGCCCCGGCCCGGGTCGGGTTCGGTCAGGAAGGACAACATGAAGGTGAACAGCAGGAACGCATAACAGTTCTGGCCGATGTTCACGCCCGCGGCGCGCAGTACCCCGCGCCAGTCCTGGCGCAATACCGCCAGGCCACGCGGCGCCGGCCGATCCGCGCCGGAGCGCGCGCCGGCGAAATCGGGTGTCTCGGAGATCCGCATCCTGGTCCAGATGCCGATGATCAGGACGACGCCGCCCACCAGGAACGGAATCCGCCAGCCCCACGCGATCACCTGATCCATCGGGAGCAGCAGGACGAGCGCGAAGGCGGTGTTCGCCAGGATCGCGCCGACCGGCGATCCGAGCGTGACGAAACACCCGTAGAGCCCGCGGCGGGAGGCGGGGGCGTGCTCGGCCGCCAACAGCACCGCGCCGCCGATCTCACCGCCCCGGGAGATGCCGTGCAGCATCCGCAGGAAGATCAGGATCATCGGGGCGACGATCCCGATCGACCGCGAGTCCGGCACCAGGCCCATGACCAGGGTGGCCGATCCCATCAGGATGAACGCGGTGGTGAGCGCCGCGCGCCGGCCGAACCGGTCACCGTAGTGCCCGAAGATCACCGCGCCGACCGGTGCCATGACGAAGCCGATGGCGAAGGTGGCGAACCCGAGGAAGGTGCCGAACCAGGGATCGTCGGTGTCGAAATACACCTTGTTGAACACCAGCGCGGTGGCGGTGCCGTAGATCGCGAAGTCGTAGAACTCGAGGATGGTGCCGACCCCGGACGCGATCGCCAGCTTCATCGGGCGCTCGCGGGTCTCCGCGGGAGCGAGTTGGGGTGAATTCACAGCAGTCAC > 773 Noca_2340 KEGG:_rha:RHA1_ro04261_probable_S-methyl-5-thioadenosine_phosphorylase;_TIGRFAM:_methylthioadenosine_phosphorylase;_PFAM:_purine_phosphorylase,_family_2 methylthioadenosine_phosphorylase YP_923532.1 11 MTVADVAVIGGTGFYSFLGAAGEEVEEHVVDTPYGAPSAPVSVGTVADRRVAFLPRHGRHHEYPPHRIPYRANLWALRSLGVRQVLAPCAVGGLSPEVAPGDVVVPDQLVDRTQGRVSSYVETGAVHLPFADPYCPGVSAALLAAAPDARVGGAMVVIEGPRFSTRAESRHYAEQGWALINMTGAPEAALARELRLCYATIALVTDMDAGAESGAGVSQEEVFALFRANLGRLEGVLTRAVAGLPDPEGCTCSSWADGIDLTYL high_GC_Gram+ Nocardioides_sp._JS614 Nocardioides_sp._JS614 NC_008699 2494487..2495752 Coleman,N.V.,_Wilson,N.L.,_Barry,K.,_Brettin,T.S.,_Bruce,D.C.,_Copeland,A.,_Dalin,E.,_Detter,J.C.,_Del_Rio,T.G.,_Goodwin,L.A.,_Hammon,N.M.,_Han,S.,_Hauser,L.J.,_Israni,S.,_Kim,E.,_Kyrpides,N.,_Land,M.L.,_Lapidus,A.,_Larimer,F.W.,_Lucas,S.,_Pitluck,S.,_Richardson,P.,_Schmutz,J.,_Tapia,R.,_Thompson,S.,_Tice,H.N.,_Spain,J.C.,_Gossett,J.G._and_Mattes,T.E. NA 1262:>1266 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000509.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3634503Source_DNA_and_bacteria_available_from_James_Gossett(jmg18@cornell.edu)Contacts:_James_Gossett_(jmg18@cornell.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 20-JAN-2012 Nocardioides_sp._JS614_chromosome,_complete_genome. NA Nocardioides_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nocardioides_sp_A1SJ59_NOCSJ.gb Nocardioides_Prauser_1976 119714272 J._Bacteriol._193_(13),_3399-3400_(2011) NA NC_008699 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 21551312 1266 NA genomic_DNA NA JS614 NA Nocardioides_sp._JS614 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 196162 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Nocardioidaceae,_Nocardioides Genome_Sequence_of_the_Ethene-_and_Vinyl_Chloride-Oxidizing_Actinomycete_Nocardioides_sp._Strain_JS614 NA NC_008699.1 GTGGTGAGCGTCCGTGCCCTGCCCGACGTCGCGGAGGTGCAGCGGCGCACGATGCGCACGCTGGTCGCCGCGCAGGCGGTCGGCGCCATCGGCATCACCATCGGCATCGCGACGGCCTCGCTGCTCGCGCGGGACATCTCCGGGTCGGAGAGCCAGGCCGGCCTCGCCCAGACCTTCCAGGTGCTCGGCGCGGCGGTCGCGGCCTACCTGCTGGCGCGGCTGATGTCGGTGCGCGGCCGGCGGGTCGGCCTGGTGACCGGCTACCTCCTCGGCGCCGCCGGCGCGCTGCTCGCCGTACTGGCCGGCGTGGTGGACTCGATGCTGGTGCTGCTCGTGGGCGCGGTGCTGCTCGGCTCGACGACCGCCGCGAACAGCAGCGCCCGGTACGCCGCGACCGACCTCGCCGAGGACGCCCACAAGGGCCGGGCGCTCTCCACGGTGGTGTGGGCGACGACCATCGGCGCGGTCGCCGGCCCCAACCTGACGGGACCGGCGGGCGCCCTGGCGGGCTGGCTCGGCATTCCCGAGCTCACCGGGCCGTTCGCACTCGGCAGCCTCGGCATGCTCGGGGCCGCGTTGATCACGTTCCTGATGCTGCGGCCCGACCCGCTGCTCACGGCCCGGGAGGTGGCCGGGGTCGCTCCCCAGGCGCCCGGCGGGACCGGCTGGGGGCGCGCCGTCGCCGCCGCCCGGGAGCGCCCGGTGATCGCCTTCGCCGTCCTGGCCATGGCCTGCTCGCACGCCGCGATGGTCGCGGTGATGGTGATGACGCCGCTGCACATGGAGCACGGGCACGCGGAGCTGCGGGTGATCGGCATCGTGATCAGCGTCCACGTGCTCGGCATGTTCGCGTTCTCCCCGCTGGTCGGCATGCTCGCCGACCGCACCGGCCGGCCGGCCGTCCTGCTCGAGGGCGCGGCGCTCCTGCTCGCGTCGCTGGTGCTCTCCGCCCGCGCGCCCGAGGGCAGCTCCTGGCAGATCTTCGTCGGGCTGTTCCTGCTCGGGCTGGGCTGGTCGTTCGCGACCGTCGCCGCCTCGACCCTGATCGCGCAGCACGCGCCGCTCGACGCGCTCACCGACGTCCAGGGTGCGGCCGACCTGGTGATGGGGCTGACCGCCGCCGGGGCCGGCGCCCTGGCCGGCGTCGTGGTCGGCGCCTGGGGCTACCCGGAGCTCGCGATCTCCGCGATCGGCCTGGTCGCGTTGGTCGCCGTCGGCGGTCTGGGCGCCCGCGCGTCCACCCGGCCTGGCAGGGTGGACGCATGA > 774 Ndas_2256 InterPro_IPR005828:IPR005829:IPR004736:IPR016196;_KEGG:_sen:SACE_5135_metabolite_transporter_YhjE;_PFAM:_general_substrate_transporter;_SPTR:_C1YV82_Metabolite-proton_symporter;_TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_Sugar_(and_other)_transporter;_TIGRFAM:_metabolite-proton_symporter major_facilitator_superfamily_metabolite/H+_symporter YP_003680184.1 11 MTDVAPRAPEEAEPPANPKRKVLTASLVGTSIEFYDFYIYATAAVLVFPALFFPEGDMLAARLQSLATFAIAFVARPIGSWVFGHFGDRVGRKATLVASLLTMGIATVGIGVLPTYAQVGVLAPLLLAVCRFGQGLGLGGEWGGAALLATENAPPGKRGFYGSFPQLGAPIGFFLANGVFLALSQFMSDETFLAWGWRVPFLLSTLLIVVGLWVRLTLHETPAFAKIVASGERVKSPMAEVFRTNWPAVVLGTLIMLATYVLFYLMTVFSLGFGTDPVAGLGYDRSQFLVFLLVGVVFFGVFTPVAGLLADRFGRKPVLVWVTVAIIVFGFAMGPLMGGGGTVGVLAFLIVGLSLMGLTFGPMASVLPELFPTKVRYTGASVAYNLAGLLGASFAPYIATWLAGTLGLKWVGGYLVLVGVITLVALLISRETRDDSLDDTPVRVTGR high_GC_Gram+ Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 NC_014210 2699049..2700392 Sun,H.,_Lapidus,A.,_Nolan,M.,_Lucas,S.,_Del_Rio,T.G.,_Tice,H.,_Cheng,J.F.,_Tapia,R.,_Han,C.,_Goodwin,L.,_Pitluck,S.,_Pagani,I.,_Ivanova,N.,_Mavromatis,K.,_Mikhailova,N.,_Pati,A.,_Chen,A.,_Palaniappan,K.,_Land,M.,_Hauser,L.,_Chang,Y.J.,_Jeffries,C.D.,_Djao,O.D.,_Rohde,M.,_Sikorski,J.,_Goker,M.,_Woyke,T.,_Bristow,J.,_Eisen,J.A.,_Markowitz,V.,_Hugenholtz,P.,_Kyrpides,N.C._and_Klenk,H.P. NA 0:1344 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002040.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4082385Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-PGFAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Nocardiopsis_dassonvillei_dassonvillei_DSM_43111Culture_Collection_ID_::_DSM_43111,_ATCC_23218,_IAM_14287,_IMET_9605,_IMRU_509,_JCM_7437,_NCTC_10488GOLD_Stamp_ID_::_Gi02065Funding_Program_::_DOE-GEBA_2007Gene_Calling_Method_::_GeneMarkHost_Name_::_Homo_sapiensBody_Sample_Site_::_BloodOxygen_Requirement_::_AerobeTemperature_Range_::_MesophileTemperature_Optimum_::_28CGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_Actinomycetoma,_Pulmonary_infectionHabitat_::_Blood,_HostPhenotypes_::_Lacks_Mycolic_acids,_Pathogen##Metadata-END##COMPLETENESS:_full_length. NA 31-AUG-2011 Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111_chromosome,_complete_genome. NA Nocardiopsis_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Nocardiopsis_dassonvillei_D7AVI9_NOCDD.gb Nocardiopsis_Meyer_1976_(sic) 297558985 Stand_Genomic_Sci_3_(3),_325-336_(2010) NA NC_014210 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 21304737 1344 NA genomic_DNA NA DSM_43111 NA Streptothrix_dassonvillei NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptosporangineae_Ward-Rainey_et_al._1997_emend._Zhi_et_al._2009 NA Streptomyces_flavidofuscus_Preobrazhenskaya_1986 NA NA NA prokaryotes NA 446468 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptosporangineae,_Nocardiopsaceae,_Nocardiopsis Complete_genome_sequence_of_Nocardiopsis_dassonvillei_type_strain_(IMRU_509) NA NC_014210.1 ATGACGGACGTCGCCCCACGCGCACCAGAAGAGGCCGAGCCACCGGCCAATCCCAAGAGGAAGGTCCTCACGGCCAGCCTCGTGGGGACGTCCATCGAGTTCTACGACTTCTACATCTACGCGACGGCCGCGGTCCTGGTCTTCCCCGCGCTGTTCTTCCCCGAGGGCGACATGCTGGCGGCGCGGCTGCAGTCGCTGGCCACCTTCGCCATCGCCTTCGTCGCCCGCCCCATCGGCTCCTGGGTGTTCGGCCACTTCGGCGACCGCGTCGGGCGCAAGGCCACCCTGGTGGCGTCCCTGCTGACCATGGGCATCGCCACCGTCGGCATCGGCGTGCTGCCCACCTACGCGCAGGTGGGCGTCCTGGCCCCGCTGCTGCTGGCGGTGTGCCGCTTCGGCCAGGGCCTGGGACTGGGCGGGGAGTGGGGCGGCGCGGCCCTGCTGGCCACCGAGAACGCCCCTCCCGGCAAGCGCGGCTTCTACGGCTCGTTCCCGCAGCTGGGAGCGCCGATCGGGTTCTTCCTCGCCAACGGCGTGTTCCTGGCCCTGAGCCAGTTCATGAGCGACGAGACCTTCCTGGCCTGGGGCTGGCGCGTGCCGTTCCTGCTCTCGACCCTGCTGATCGTGGTCGGCCTGTGGGTCCGCCTGACCCTGCACGAGACCCCGGCCTTCGCCAAGATCGTCGCCTCGGGCGAGCGGGTCAAGTCGCCGATGGCGGAGGTGTTCCGCACCAACTGGCCCGCCGTGGTGCTGGGCACGCTGATCATGCTCGCCACGTACGTGCTGTTCTACCTGATGACCGTGTTCTCCCTGGGCTTCGGCACCGACCCGGTGGCGGGCCTGGGCTACGACCGGTCGCAGTTCCTGGTGTTCCTGCTGGTGGGCGTGGTGTTCTTCGGGGTGTTCACCCCCGTCGCGGGCCTGCTCGCCGACCGGTTCGGCCGCAAGCCGGTCCTGGTCTGGGTCACCGTCGCGATCATCGTCTTCGGCTTCGCCATGGGCCCGCTGATGGGCGGCGGCGGCACGGTCGGCGTGCTGGCCTTCCTCATCGTGGGGCTGAGCCTGATGGGCCTGACCTTCGGCCCGATGGCCTCCGTGCTGCCGGAGCTGTTCCCGACCAAGGTGCGCTACACCGGCGCCTCGGTGGCCTACAACCTGGCGGGCCTGCTGGGCGCCTCGTTCGCCCCCTACATCGCGACGTGGCTGGCGGGCACCCTGGGACTGAAATGGGTCGGCGGCTACCTGGTCCTGGTCGGCGTGATCACCCTGGTGGCGCTGCTGATCAGCCGTGAGACGCGCGACGACTCCCTGGACGACACCCCGGTGCGGGTGACCGGCCGCTAG > 775 Saro_1295 NA general_substrate_transporter YP_496573.1 11 MNPIRQHGRVLTASLVGTAVEFYDFYIYATAAALVIGPLFFPTESQAAQTLLSFMTFGLAFFARPVGAVAFGHFGDRIGRKSTLVASLMLMGGSTLLIAFLPTYAIAGWIAPALLCLLRFGQGFGLGGEWGGAALLAVENAPRGWEARFGSAPQLGAPLGFFFANGLFLLLGLGLSDADFAAWGWRVPFLASAVLVGVGLWVRLKIGETPSFREAMEKAPPPQVPISRLLRGHSPAVLAGIAGVVACFAIFYLATTFALSFATTALGYAKQEFLAVQLGANTFFALGILVAGYWADKTSVRRVLGTGAALTAVLGMVFGTGLGSGSLAVVFATLASSLFIMGLAYGPLGAWLPTLFPVSVRYTGISLAFNVGGIIGGALAPFAAAWLAGVGGTAYVGVFLTLAGAMTLAGVQFSPRGAEPGEA alpha_subgroup Novosphingobium_aromaticivorans_DSM_12444 Novosphingobium_aromaticivorans_DSM_12444 NC_007794 1339901..1341172 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina,T.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Kyrpides,N.,_Ivanova,N.,_Fredrickson,J.,_Balkwill,D.,_Romine,M.F._and_Richardson,P. NA 0:1272 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000248.URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_MargieRomine(margie.romine@pnl.gov)Contact:_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 22-JAN-2012 Novosphingobium_aromaticivorans_DSM_12444_chromosome,_complete_genome. NA alpha-4_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Novosphingobium_aromaticivorans_Q2G8T4_NOVAD.gb Novosphingobium_Takeuchi_et_al._2001 87198026 Unpublished NA NC_007794 NA NA Sphingomonadales purple_photosynthetic_bacteria_and_relatives NA 1272 NA genomic_DNA NA DSM_12444 NA Sphingomonas_aromaticivorans_Balkwill_et_al._1997 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 279238 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Sphingomonadales,_Sphingomonadaceae,_Novosphingobium Complete_sequence_of_Novosphingobium_aromaticivorans_DSM_12444 NA NC_007794.1 ATGAATCCGATTCGCCAGCACGGCCGCGTGCTGACCGCCAGCCTCGTCGGCACGGCGGTCGAGTTCTACGATTTCTATATCTACGCGACGGCGGCGGCGCTGGTCATCGGTCCGCTTTTCTTTCCCACGGAATCGCAGGCTGCCCAGACTCTCCTCTCCTTCATGACCTTCGGCCTGGCGTTCTTCGCGCGGCCCGTCGGGGCGGTGGCCTTCGGGCATTTCGGTGATCGCATCGGGCGCAAGTCGACGCTGGTCGCGTCGCTCATGCTGATGGGCGGATCGACGCTGCTGATCGCGTTCCTGCCAACTTATGCGATCGCCGGGTGGATCGCCCCGGCGCTGCTTTGCCTCCTGCGCTTCGGTCAGGGTTTCGGGCTTGGCGGGGAGTGGGGCGGGGCGGCGCTGCTGGCGGTGGAGAATGCGCCGCGCGGCTGGGAAGCGCGCTTCGGCAGCGCGCCGCAGCTTGGCGCGCCGTTAGGGTTCTTTTTCGCCAACGGCCTGTTCCTCCTGCTCGGCCTCGGCCTCTCGGACGCGGACTTTGCCGCCTGGGGCTGGCGCGTGCCGTTCCTTGCCAGCGCGGTGCTGGTCGGCGTGGGCTTGTGGGTGCGGCTGAAGATTGGCGAAACGCCCTCGTTCCGTGAAGCTATGGAAAAGGCGCCGCCGCCGCAGGTGCCCATTTCCCGCCTGCTGCGCGGTCACTCCCCGGCCGTCCTCGCCGGGATCGCCGGCGTGGTCGCGTGCTTCGCCATCTTCTACCTCGCGACGACCTTCGCCCTGTCCTTTGCCACGACCGCGCTGGGCTATGCCAAGCAGGAATTCCTTGCGGTCCAGCTTGGCGCCAACACCTTCTTCGCGCTCGGCATTCTCGTGGCGGGCTACTGGGCCGACAAGACTTCGGTCCGGCGTGTCCTCGGCACGGGCGCGGCGCTCACCGCGGTGCTCGGCATGGTCTTCGGGACCGGGCTGGGCTCGGGCTCGCTTGCGGTGGTCTTCGCGACGCTCGCCTCGTCGCTGTTCATCATGGGCCTTGCCTACGGGCCGCTCGGCGCGTGGTTGCCGACGCTCTTTCCGGTGTCGGTGCGCTACACCGGCATTTCACTGGCGTTCAACGTCGGCGGGATCATCGGGGGCGCGCTGGCGCCCTTCGCCGCGGCCTGGCTCGCGGGAGTGGGGGGCACCGCCTATGTCGGCGTGTTCCTGACCCTGGCTGGGGCGATGACGCTGGCGGGCGTACAGTTCTCCCCCCGGGGGGCCGAACCCGGGGAGGCGTGA > 776 OG2516_04361 COG0477_Permeases_of_the_major_facilitator_superfamily membrane_protein,_putative EAR50542.1 11 MIQVLGSAWPLLLGLFMLMVGNGLQGTLLGVRGALEGFSTLEMSVVMSAYFVGFLGGSRLAPEMIRRVGHVRVFAALGSAISAILILYPTLVSPWAWTLGRVIIGFCFAGVYVTAESWLNNSATNETRGQALSLYMIVQMGGIVTAQYLLLLGDAGGFVLFVIPSVLVSLAFAPILLSVSPTPAFATTKPLNLKRLVEASPLASVGMILLGGVFAAQFGMAAVYATRAGMTLAQISVFVSAIYIAGLLFQYPIGWLSDRYDRRLVIIGASLGGGVGALVGATLGGSSFGALLFAAAMMGGTSNPLYSLLIAYANDFLEPEDMAAASAGFIFINGLGAIAGPITVGYMMDLLGAPGYWGFVAVLMLAIAAYGLYRTVRRPHVSTVSETVPYAKVIASASPLAVELAQEVYIEAEAEEAAAVQDEAAAEPWPAPEGQGATREQSDAQSPR alpha_subgroup Oceanicola_granulosus_HTCC2516 Oceanicola_granulosus_HTCC2516 AAOT01000026 2268..3614 Thrash,J.C.,_Cho,J.C.,_Vergin,K.L._and_Giovannoni,S.J. NA 0:1347 Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation. NA 01-MAR-2006 Oceanicola_granulosus_HTCC2516_1099521379985,_whole_genome_shotgun_sequence. NA alpha-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Oceanicola_granulosus_Q2CD34_9RHOB.gb Oceanicola_Cho_and_Giovannoni_2004 89044408 J._Bacteriol._192_(13),_3549-3550_(2010) NA AAOT01000026 NA NA Rhodobacterales purple_photosynthetic_bacteria_and_relatives 20418400 1347 NA genomic_DNA NA HTCC2516 NA Oceanicola_granulosus_Cho_and_Giovannoni_2004 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 314256 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodobacterales,_Rhodobacteraceae,_Oceanicola Genome_sequences_of_Oceanicola_granulosus_HTCC2516(T)_and_Oceanicola_batsensis_HTCC2597(TDelta) NA AAOT01000026.1 CTAGCGGGGCGATTGCGCGTCACTCTGCTCACGCGTCGCACCCTGCCCCTCCGGCGCTGGCCACGGCTCCGCCGCGGCCTCGTCCTGAACGGCGGCGGCCTCTTCGGCCTCGGCCTCGATGTAGACCTCCTGCGCCAGTTCCACCGCCAGCGGCGAGGCGGAGGCGATGACCTTGGCGTAGGGCACCGTCTCGCTCACGGTCGACACGTGCGGGCGGCGCACGGTGCGGTAGAGGCCGTAGGCCGCAATGGCCAGCATCAGCACCGCGACGAAGCCCCAGTAGCCGGGCGCACCGAGCAGGTCCATCATGTAGCCCACGGTGATCGGGCCGGCGATGGCGCCGAGGCCGTTGATGAAGATGAACCCCGCCGAGGCGGCGGCCATGTCCTCGGGCTCGAGGAAGTCGTTGGCGTAGGCGATGAGCAGGGAATAGAGCGGGTTCGACGTCCCGCCCATCATCGCGGCCGCGAACAGCAGCGCGCCGAAGGAGCTGCCGCCCAGCGTCGCGCCCACGAGCGCGCCGACGCCGCCCCCGAGCGAGGCGCCGATGATGACGAGGCGGCGGTCGTAGCGGTCGGACAGCCAGCCGATCGGGTACTGGAACAGCAGACCGGCGATGTAGATGGCGGAGACGAAGACCGAGATCTGCGCCAGCGTCATCCCCGCGCGGGTGGCGTAGACCGCCGCCATGCCGAACTGCGCCGCGAACACGCCGCCGAGCAGGATCATGCCCACCGACGCCAGCGGCGAGGCCTCCACGAGGCGCTTTAGGTTGAGCGGCTTGGTGGTGGCGAAGGCGGGCGTCGGCGACACCGACAGCAGGATCGGCGCGAAGGCGAGGCTCACGAGGACCGAGGGGATGACGAACAGCACGAAGCCGCCGGCGTCGCCCAGCAGCAGCAGGTACTGGGCGGTGACGATGCCGCCCATCTGCACGATCATGTAGAGCGACAGCGCCTGGCCCCGGGTCTCGTTGGTGGCCGAGTTGTTGAGCCAGCTCTCGGCGGTGACGTAGACCCCGGCGAAGCAGAAGCCGATGATGACCCGGCCCAGCGTCCAGGCCCAGGGGCTGACGAGGGTCGGGTAGAGGATGAGGATCGCCGAGATGGCGCTGCCGAGCGCGGCGAAGACGCGGACATGGCCGACCCGGCGGATCATCTCGGGCGCGAGCCGCGAGCCGCCGAGGAAGCCCACGAAGTAGGCCGACATCACCACCGACATCTCGAGCGTCGAGAAGCCCTCCAGCGCGCCGCGCACGCCGAGGAGCGTGCCCTGCAGGCCGTTGCCGACCATGAGCATGAAGAGGCCGAGCAGAAGCGGCCACGCGCTGCCGAGAACCTGGATCAT > 777 OINT_1001586 GO_component:_GO:0005887_-_integral_to_plasma_membrane;_GO_function:_GO:0015295_-_solute:hydrogen_symporter_activity;_GO_process:_GO:0006810_-_transport metabolite:proton_symporter_family_protein EEQ96167.1 11 MRAVRDCPLSGVFRMNNAEMHADANGEIEAAHDAHDTRRRVFAIVASASGNLVEWYDFYVYSFGALYFASQFFPAEDQTSQLLNAAAIFAAGFLMRPIGGWLFGRIADRLGRRTSMLISVTMMCLGSFAIAILPTYQSIGIAAPFLLLIVRLLQGLSVGGEYGTTATYMSEVALAGRRGFFSSFQYVTLIGGQLLAVLVIVVLQFFLTSDELHAWGWRIPFAIGGVAAIVALFLRRTLHETSTEETRSNKAAGSFANIWKNHRKAFLVVVGFTAGGSLAFYTFTTYMQKYLVNTAGMSKETASETMTVVLLVYMLMQPLFGALSDRIGRKTMMIGFGGISILTTIPLLTLIGSVQSPLWAFIYIVIALAIVSMYTSISGIVKAELFPAEVRALGVGFSYAIANAIFGGTAEYVALWFKQQGMESGFFWYVTVIMVVVFVVSIMMPNPRTHGYLQGHGSVD alpha_subgroup Ochrobactrum_intermedium_LMG_3301 Ochrobactrum_intermedium_LMG_3301 ACQA01000001 1641539..1642921 Setubal,J.C.,_Boyle,S.,_Crasta,O.R.,_Gillespie,J.J.,_Kenyon,R.W.,_Lu,J.,_Mane,S.,_Nagrani,S.,_Shallom,J.M.,_Shallom,S.,_Shukla,M.,_Snyder,E.E.,_Sobral,B.W.,_Wattam,A.R.,_Will,R.,_Williams,K.,_Yoo,H.,_Munk,C.,_Tapia,R.,_Green,L.,_Rogers,Y.,_Detter,J.C.,_Bruce,D.,_Brettin,T.S._and_Tsolis,R. NA 0:1383 Draft_sequencing_and_assembly_of_Ochrobactrum_intermedium_LMG3301was_performed_at_Los_Alamos_National_Laboratory,_Los_Alamos,_NM(LANL,_http://www.lanl.gov).Annotation_and_database_submission_were_carried_out_by_thePathosystems_Resource_Integration_Center,_Blacksburg,_VA_(PATRIC,http://patric.vbi.vt.edu),_a_Bioinformatics_Resource_Centersupported_by_the_NIH/NIAID.Source_DNA_available_from:_Renee_Tsolis_(rmtsolis@ucdavis.edu)Genome_Coverage:_5x_Sanger;_25x_454Sequencing_Method:_WGS_and_clone-basedSequencing_Technology:_ABI;_454. NA 11-JUN-2009 Ochrobactrum_intermedium_LMG_3301_chromosome_I_VBI00028_1,_whole_genome_shotgun_sequence. NA Brucellaceae_Breed_et_al._1957 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ochrobactrum_intermedium_C4WF90_9RHIZ.gb Ochrobactrum_Holmes_et_al._1988 239823111 Submitted_(15-MAY-2009)_The_Pathosystems_Resource_Integration_Center_(PATRIC),_Virginia_Bioinformatics_Institute_at_Virginia_Polytechnic_Institute_and_State_University,_Bioinformatics_I,_Washington_Street,_Blacksburg,_VA_24061,_USA NA ACQA01000001 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1383 I genomic_DNA NA LMG_3301 NA Ochrobactrum_intermedium_Velasco_et_al._1998 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 641118 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Brucellaceae,_Ochrobactrum Direct_Submission NA ACQA01000001.1 TCAATCGACCGAGCCGTGCCCTTGCAGATAACCGTGCGTGCGTGGGTTCGGCATCATGATACTGACGACGAAGACGACCACCATGATCACGGTCACATACCAGAAGAAGCCGCTTTCCATGCCCTGCTGCTTGAACCACAGCGCCACATATTCCGCCGTGCCGCCAAAAATAGCGTTGGCGATCGCATAGGAAAAGCCGACGCCCAGCGCCCGCACTTCCGCCGGAAACAGTTCTGCCTTCACGATGCCGCTGATAGAGGTGTACATGCTGACGATCGCCAGCGCGATCACGATATAGATGAACGCCCAGAGTGGACTCTGAACCGAACCGATCAGCGTCAGGAGCGGTATCGTCGTCAGGATCGAAATGCCGCCAAACCCGATCATCATCGTCTTGCGCCCGATCCTGTCGGACAATGCGCCGAAGAGCGGCTGCATCAGCATATAGACCAGCAGCACGACGGTCATGGTTTCGCTGGCCGTTTCCTTGCTCATGCCAGCCGTGTTGACCAGATATTTCTGCATATAGGTGGTGAAGGTATAGAAGGCGAGCGAACCGCCAGCCGTGAAGCCTACCACAACGAGGAAAGCCTTGCGGTGGTTCTTCCAGATATTGGCGAAGCTGCCCGCCGCCTTGTTGCTGCGGGTTTCTTCCGTCGAGGTCTCGTGAAGGGTCCGCCGCAGGAAAAGCGCCACGATGGCCGCGACACCGCCAATGGCGAAAGGAATGCGCCAGCCCCAGGCGTGAAGCTCATCCGATGTCAGGAAGAACTGCAGCACCACGATCACCAGAACGGCAAGCAACTGCCCGCCGATCAGCGTGACATACTGGAACGAGGAAAAGAAGCCACGGCGACCGGCAAGCGCCACCTCGCTCATATAGGTAGCGGTGGTGCCGTACTCGCCACCGACGGAAAGCCCCTGCAAAAGCCGCACGATCAGCAACAGGAATGGTGCCGCAATGCCAATGCTCTGATAGGTCGGCAGAATGGCGATCGCGAAAGAACCGAGGCACATCATCGTGACCGAAATCAGCATGGATGTGCGTCGGCCGAGCCGGTCGGCAATGCGGCCAAAGAGCCAGCCGCCGATAGGGCGCATGAGGAAACCAGCCGCAAAAATCGCAGCCGCGTTCAACAACTGGCTGGTCTGGTCTTCGGCGGGAAAAAACTGCGACGCGAAATAAAGCGCGCCGAAGGAATAGACGTAAAAATCGTACCACTCCACCAGATTGCCCGATGCGCTGGCCACGATGGCAAAGACGCGGCGGCGCGTGTCATGGGCATCATGTGCCGCTTCGATCTCGCCATTGGCGTCAGCATGCATTTCTGCATTGTTCATTCTGAAAACTCCCGATAGCGGGCAGTCTCGAACAGCCCGCAA > 778 AWRIB429_0210 NA hypothetical_protein EFD89192.1 11 MNEEKISSRFIYFFGAFGGILFGYDIGVMTGALPFLEKDWNLYNSAGIVGWITSAVMFGAIFGGALAGQLADRLGRRKMILISAIIFAVFSVLSAIAPNNGSYYLIIMRIFLGLAVGAASALVPAYISELAPAAIRGRLSGLDQTMIVSGMLISYIVDYILKGLPNQIAWRLMLGFACIPAIILYLGVMKLPESPRYLIKNGRPDEARKVMSYVRSSEGEINNEINQIKETAHKEQEAQKTSWSALFSGKYRYLVIAGVGVAAFQQFQGANAIFYYIPLIVQKATGQAATSALMWPIIQGVILVIGSLVFMWIAEKFNRRTLLMFAGTIMGLSFILPAIIRWIDPHASQMMIVVFLCIYVAFYSATWAPLTWVLVGEIFPLAIRGRAAGLASSFNWIGSWAVGLLFPIMTVSMSQEVVFAIFGVICLFGALFVKTCVPETRGHSLEEIESRYSKAK Bacillus/Lactobacillus/Streptococcus_group Oenococcus_oeni_AWRIB429 Oenococcus_oeni_AWRIB429 ACSE01000003 10480..11850 Borneman,A.R.,_Bartowsky,E.J.,_McCarthy,J._and_Chambers,P.J. NA 0:1371 Oenococcus_oeni_AWRIB429_is_an_industrial_bacterium_which_isresponsible_for_the_malolactic_fermentation_process_that_occursduring_winemaking.DNA_available_from_Dr_Eveline_Bartowsky,_The_AWRI_WineMicroorganism_Culture_Collection_PO_Box_197_Glen_Osmond,_Adelaide,Australia,_5064Assembly_Method:_Velvet_v0.7Genome_Coverage:_50x-100xSequencing_Technology:_Illumina. NA 03-MAR-2010 Oenococcus_oeni_AWRIB429_429_contig_3,_whole_genome_shotgun_sequence. NA Leuconostocaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Oenococcus_oeni_D3L780_OENOE.gb Oenococcus_Dicks_et_al._1995_emend._Endo_and_Okada_2006 290480545 Appl._Microbiol._Biotechnol._86_(2),_681-691_(2010) NA ACSE01000003 NA NA Lactobacillales low_GC_Gram+ 20111862 1371 NA genomic_DNA NA AWRIB429 NA Oenococcus_oeni_(Garvie_1967)_Dicks_et_al._1995 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 655225 Bacteria,_Firmicutes,_Lactobacillales,_Oenococcus Genotypic_diversity_in_Oenococcus_oeni_by_high-density_microarray_comparative_genome_hybridization_and_whole_genome_sequencing NA ACSE01000003.1 ATGAATGAAGAAAAAATTTCAAGTCGTTTTATCTATTTCTTTGGAGCGTTCGGAGGCATTTTATTTGGTTACGATATCGGTGTGATGACCGGTGCTTTACCATTCTTGGAAAAGGACTGGAATTTATACAATAGTGCCGGTATCGTTGGCTGGATTACCTCGGCTGTCATGTTTGGAGCCATTTTCGGAGGAGCCTTGGCAGGACAATTGGCTGATCGTTTGGGTCGCCGGAAAATGATTCTAATTTCCGCAATAATTTTTGCAGTATTTTCAGTACTATCTGCAATTGCTCCTAATAATGGTTCTTACTACCTTATTATTATGAGAATTTTTTTGGGTCTGGCAGTTGGAGCCGCCTCTGCTTTGGTTCCGGCATATATTTCTGAATTAGCGCCTGCGGCAATTCGCGGTAGGCTCTCTGGACTGGATCAAACAATGATTGTTTCTGGTATGCTGATTTCTTATATCGTCGACTATATTCTTAAAGGGCTTCCAAATCAGATTGCATGGCGTCTAATGCTTGGATTCGCTTGCATACCTGCGATCATTCTTTATTTAGGAGTTATGAAGTTACCAGAATCTCCTCGTTATTTGATTAAGAATGGCCGCCCTGATGAAGCCCGAAAAGTTATGAGTTATGTTCGTTCTTCTGAAGGAGAAATTAATAACGAAATTAATCAGATCAAAGAAACCGCTCATAAAGAGCAAGAAGCTCAAAAGACATCATGGAGCGCATTGTTCAGTGGAAAGTATCGTTACTTAGTAATTGCTGGCGTTGGTGTTGCAGCCTTTCAACAATTTCAGGGTGCTAACGCGATTTTCTATTACATCCCGTTGATTGTTCAAAAAGCAACCGGTCAGGCAGCTACTTCCGCATTAATGTGGCCTATTATACAAGGAGTTATTTTAGTTATCGGTTCGCTTGTATTTATGTGGATTGCTGAAAAATTCAATCGTCGTACATTACTAATGTTTGCTGGTACGATTATGGGATTATCTTTCATTTTGCCTGCAATCATCAGGTGGATAGATCCTCATGCAAGCCAAATGATGATCGTTGTTTTCCTCTGTATATATGTAGCTTTTTATTCGGCAACTTGGGCTCCATTGACCTGGGTATTGGTTGGTGAAATATTCCCATTAGCCATTCGTGGTAGGGCAGCCGGCTTGGCTTCTTCTTTTAATTGGATTGGATCTTGGGCAGTTGGACTTTTATTCCCAATTATGACGGTTTCCATGTCTCAAGAAGTAGTTTTTGCGATTTTTGGAGTCATCTGTTTATTCGGTGCCTTGTTCGTTAAGACTTGTGTCCCCGAAACTCGTGGCCATTCATTGGAAGAAATAGAATCAAGATATTCTAAAGCAAAATAA > 779 AWRIB429_1712 NA hypothetical_protein EFD87886.1 11 MKQAIETIPANKKLKYIKKIAILATFGAFLFGYDTGVINGSLSFMARGDELNLSPFMEGLVTSSLLFGAAIGAVIWGRLADRYGRKSILRVLAIIFFFSTLGSSIAPNSYVLIIGRLFMGLAVGGVAGIVPVYLGEMAPSNIRGSLVCQDQMMIVLGQLLAYVMNGILGNAFNVSYIWRFMIALAAIPAIILWIGTYIIPETPRWLAIEKKSDQALVVLRNTRDDKTADQDLKHIEQNIKKESSRGHASLHDFHTPWIKRILIIGITIAVMQQLAGINIMMYYGTTILEKTGFSTKAALIANIGNGVLSVLGTTIYMFFLANRIKRRLAWIGGFCFTTTILAAIAILSHYAAGLSILPYIVITCTMLFVFVDQMTLGPVCWLLLSEIFPLHVRGLGVGIATFGMWIMDFGVGFFFPILIEIFGLSNTFWIFAVIGVICIIISFFIIPETSGRSLEQLEDSFRRS Bacillus/Lactobacillus/Streptococcus_group Oenococcus_oeni_AWRIB429 Oenococcus_oeni_AWRIB429 ACSE01000029 163788..165182 Borneman,A.R.,_Bartowsky,E.J.,_McCarthy,J._and_Chambers,P.J. NA 0:1395 Oenococcus_oeni_AWRIB429_is_an_industrial_bacterium_which_isresponsible_for_the_malolactic_fermentation_process_that_occursduring_winemaking.DNA_available_from_Dr_Eveline_Bartowsky,_The_AWRI_WineMicroorganism_Culture_Collection_PO_Box_197_Glen_Osmond,_Adelaide,Australia,_5064Assembly_Method:_Velvet_v0.7Genome_Coverage:_50x-100xSequencing_Technology:_Illumina. NA 03-MAR-2010 Oenococcus_oeni_AWRIB429_429_contig_29,_whole_genome_shotgun_sequence. NA Leuconostocaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Oenococcus_oeni_D3LBI2_OENOE.gb Oenococcus_Dicks_et_al._1995_emend._Endo_and_Okada_2006 290479055 Appl._Microbiol._Biotechnol._86_(2),_681-691_(2010) NA ACSE01000029 NA NA Lactobacillales low_GC_Gram+ 20111862 1395 NA genomic_DNA NA AWRIB429 NA Oenococcus_oeni_(Garvie_1967)_Dicks_et_al._1995 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 655225 Bacteria,_Firmicutes,_Lactobacillales,_Oenococcus Genotypic_diversity_in_Oenococcus_oeni_by_high-density_microarray_comparative_genome_hybridization_and_whole_genome_sequencing NA ACSE01000029.1 TTATGAACGACGGAATGAATCTTCCAACTGTTCCAAGCTTCTTCCGGATGTTTCTGGAATAATAAAGAAAGAAATAATTATGCAAATCACACCGATCACGGCAAAAATCCAAAAAGTATTTGATAAACCAAAGATCTCAATTAAAATCGGGAAAAAGAAGCCAACGCCGAAGTCCATTATCCACATGCCGAAAGTCGCAATTCCGACCCCCAATCCACGCACATGCAATGGAAAAATCTCGGATAAAAGCAGCCAGCAAACCGGTCCAAGAGTCATTTGATCAACAAAGACAAACAGCATCGTACAGGTGATAACAATATAAGGCAAAATCGAAAGTCCAGCAGCATAGTGACTCAAAATCGCAATGGCAGCTAATATAGTCGTCGTGAAACAGAAGCCGCCAATCCAAGCAAGTCGACGTTTAATTCGGTTAGCAAGGAAGAACATATATATAGTGGTACCCAAAACAGATAGAACTCCGTTACCGATATTGGCAATCAAAGCTGCCTTCGTGCTGAAACCCGTTTTTTCCAAAATGGTCGTTCCATAATACATCATGATATTGATACCGGCCAGTTGTTGCATTACCGCAATCGTAATTCCAATAATTAAAATTCTTTTAATCCAAGGAGTGTGAAAATCGTGCAGGCTCGCATGCCCTCTTGAACTTTCTTTTTTAATGTTTTGTTCAATATGCTTTAAATCCTGATCAGCAGTTTTATCGTCTCTGGTATTTCTAAGAACGACTAAAGCCTGATCACTTTTTTTCTCGATTGCCAACCAACGGGGCGTCTCGGGAATAATATAAGTCCCTATCCAGAGGATAATCGCAGGAATCGCTGCCAGTGCAATCATAAAACGCCAGATATAGGAAACATTAAAGGCGTTTCCCAAAATGCCATTCATGACATAAGCCAGTAATTGTCCTAAAACAATCATCATTTGATCTTGGCATACCAGGCTTCCACGAATATTGGATGGTGCCATTTCTCCCAAATAGACCGGCACAATTCCGGCAACTCCGCCAACTGCTAGACCCATAAACAATCTGCCAATAATCAAAACGTATGAATTCGGTGCGATAGAAGAACCAAGTGTAGAAAAAAAGAAAATTATCGCCAAGACACGTAAAATTGATTTACGACCGTATCTATCAGCCAAACGGCCCCAAATAACGGCCCCAATTGCCGCTCCAAATAACAAAGAGCTGGTGACCAGTCCCTCCATAAACGGAGAGAGATTAAGCTCATCGCCTCGAGCCATAAAAGAAAGAGAGCCATTAATGACTCCCGTATCGTAACCGAACAAAAAAGCTCCAAAAGTGGCTAAAATGGCAATTTTCTTTATATATTTTAATTTTTTATTCGCTGGAATTGTCTCAATAGCTTGTTTCAA > 780 AWRIB429_1713 NA hypothetical_protein EFD87887.1 11 MKAHHLNIFFIFVFGALGGLLFGFDTGIISGASSLIESDFSLNIEQTGFITSSVLIGSSIGALSVGSLSDKFGRKKLLILASVLFLIGSGLSMSAVGFVSMVIARIILGFAVGSASALTPAYLAELADAPHRGSLGSMFQLMITLGILLAYVSNLGFLGHNLLGLRDWRWMLGSALIPALILFIGSIVLPESPRYLVEKGRIDEARSVLHHLREKTNEDPDKELADIKKVSNQPKGGFKELFTFARPAVIVAIGLMLLQQLVGINSVIYFLPQVFIKGFGFQAGNAIWISVGIGVVNFLCTVLAYNIMDKFNRRTILLFGSIVMSVSIGILSVLNFTLSVKQAAIPTMILIAIYIFGFAVSWGPICWLMIGEIFPLNIRGVGTSIGSAANWIANFIVSQFFLVLLATFHDNVGGPFAIFTFFAILSIFFVIYLVPETRGKSLEQIEMDMRRKPLPKKN Bacillus/Lactobacillus/Streptococcus_group Oenococcus_oeni_AWRIB429 Oenococcus_oeni_AWRIB429 ACSE01000029 165553..166929 Borneman,A.R.,_Bartowsky,E.J.,_McCarthy,J._and_Chambers,P.J. NA 0:1377 Oenococcus_oeni_AWRIB429_is_an_industrial_bacterium_which_isresponsible_for_the_malolactic_fermentation_process_that_occursduring_winemaking.DNA_available_from_Dr_Eveline_Bartowsky,_The_AWRI_WineMicroorganism_Culture_Collection_PO_Box_197_Glen_Osmond,_Adelaide,Australia,_5064Assembly_Method:_Velvet_v0.7Genome_Coverage:_50x-100xSequencing_Technology:_Illumina. NA 03-MAR-2010 Oenococcus_oeni_AWRIB429_429_contig_29,_whole_genome_shotgun_sequence. NA Leuconostocaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Oenococcus_oeni_D3LBI3_OENOE.gb Oenococcus_Dicks_et_al._1995_emend._Endo_and_Okada_2006 290479055 Appl._Microbiol._Biotechnol._86_(2),_681-691_(2010) NA ACSE01000029 NA NA Lactobacillales low_GC_Gram+ 20111862 1377 NA genomic_DNA NA AWRIB429 NA Oenococcus_oeni_(Garvie_1967)_Dicks_et_al._1995 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 655225 Bacteria,_Firmicutes,_Lactobacillales,_Oenococcus Genotypic_diversity_in_Oenococcus_oeni_by_high-density_microarray_comparative_genome_hybridization_and_whole_genome_sequencing NA ACSE01000029.1 TTGAAAGCACATCATTTAAATATATTTTTTATTTTTGTTTTTGGTGCCTTGGGAGGTTTGCTCTTCGGTTTTGATACTGGGATTATTTCCGGTGCATCATCTTTAATCGAAAGTGATTTCAGTCTAAATATCGAACAAACTGGCTTCATTACATCTTCTGTTTTGATCGGATCATCGATTGGGGCCCTGTCTGTTGGTTCTTTATCCGACAAGTTCGGTCGTAAAAAATTGTTAATTCTGGCCTCGGTTTTATTCTTAATCGGATCTGGGCTATCAATGTCGGCTGTCGGTTTTGTTTCAATGGTTATCGCTCGTATCATTCTGGGTTTTGCCGTGGGATCCGCTTCAGCCTTAACTCCGGCTTACTTGGCCGAATTAGCTGATGCCCCACATAGAGGATCATTAGGAAGCATGTTCCAGCTAATGATTACCCTTGGTATTTTATTGGCATATGTTTCTAATCTCGGCTTCCTGGGTCATAATTTGTTAGGGCTTCGTGATTGGCGTTGGATGCTCGGATCGGCATTAATACCGGCTTTAATTTTATTCATAGGTTCGATTGTCCTACCGGAATCACCACGTTATCTGGTAGAAAAAGGAAGAATCGATGAAGCTCGAAGTGTCCTTCACCACTTGCGTGAAAAAACCAACGAAGATCCTGATAAGGAACTAGCAGATATTAAAAAAGTTTCCAATCAGCCCAAAGGCGGTTTTAAAGAACTTTTTACTTTTGCCCGTCCAGCCGTCATTGTTGCGATTGGACTGATGCTTTTACAACAATTGGTTGGTATTAATTCCGTTATCTACTTTTTGCCACAGGTCTTTATTAAAGGATTCGGCTTTCAAGCAGGCAATGCTATCTGGATCTCAGTCGGCATTGGTGTTGTTAATTTTCTATGTACCGTTTTGGCATACAATATCATGGACAAATTTAACCGTCGCACAATCCTCTTGTTTGGATCGATTGTAATGTCAGTATCAATTGGAATTTTGTCCGTGCTTAACTTTACTCTCAGTGTTAAACAAGCGGCCATTCCGACAATGATTCTCATTGCGATATATATCTTTGGTTTTGCCGTTTCCTGGGGACCAATTTGCTGGTTAATGATTGGTGAAATCTTCCCATTGAATATTCGTGGAGTCGGCACATCGATAGGATCAGCTGCTAACTGGATTGCAAACTTTATTGTTTCTCAATTCTTTCTCGTATTATTGGCAACTTTCCATGACAATGTCGGTGGGCCGTTTGCAATCTTCACTTTCTTTGCCATTCTTTCAATATTCTTCGTGATCTATCTCGTTCCAGAAACCAGAGGAAAATCACTTGAGCAAATTGAAATGGATATGCGTCGTAAGCCGCTGCCAAAGAAAAACTGA > 781 OEOE_0478 NA D-xylose_proton-symporter YP_810098.1 11 MENKKTNISKTNYALNFIKTKSKAERHLKIIALCVTLGGLLFGVDTGVINGALPYMAKKQELNLNPATEGLVTSSITLGAAFGAIFAGRLADRYGRKRILFYLSIVFFFCTAICSLAPNAIIMMIFRFLLGLAVGSASVIVPTFLSEIATVKLRGPLVTQNEIMITGGQLLAFVVNAILGNIFVNVSNIWRYMIAFGMIPSALLFIGTLIVPESPRWLIMKGKTKTALKILKGIRSDKRQSQQEVTQIQATLKKEKEVSHISWYDLKKPWIKKLIILGSGLGIVQQIVGINIIMYYGTTVLIKAGFTHNIALITNIANGIVSVLATYTGMHLMNHINRRKMLLTGIAGTGGALALITLVSQILPHSKLLPVCVVFLTLIFLSFFQGCISPTIWLLMSEIFPQNLRGLGMGISTFFLWMANFLVGFLFPIFLNYFGFSITFGIFVLCNLISFIFVYKFAPETRNKSLERVQLELRTRIDKN Bacillus/Lactobacillus/Streptococcus_group Oenococcus_oeni_PSU-1 Oenococcus_oeni_PSU-1 NC_008528 466241..467683 Makarova,K.,_Slesarev,A.,_Wolf,Y.,_Sorokin,A.,_Mirkin,B.,_Koonin,E.,_Pavlov,A.,_Pavlova,N.,_Karamychev,V.,_Polouchine,N.,_Shakhova,V.,_Grigoriev,I.,_Lou,Y.,_Rohksar,D.,_Lucas,S.,_Huang,K.,_Goodstein,D.M.,_Hawkins,T.,_Plengvidhya,V.,_Welker,D.,_Hughes,J.,_Goh,Y.,_Benson,A.,_Baldwin,K.,_Lee,J.H.,_Diaz-Muniz,I.,_Dosti,B.,_Smeianov,V.,_Wechter,W.,_Barabote,R.,_Lorca,G.,_Altermann,E.,_Barrangou,R.,_Ganesan,B.,_Xie,Y.,_Rawsthorne,H.,_Tamir,D.,_Parker,C.,_Breidt,F.,_Broadbent,J.,_Hutkins,R.,_OSullivan,D.,_Steele,J.,_Unlu,G.,_Saier,M.,_Klaenhammer,T.,_Richardson,P.,_Kozyavkin,S.,_Weimer,B._and_Mills,D. NA 0:1443 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000411.URL_--_http://www.jgi.doe.govJGI_Project_ID:_2662182Source_DNA_and_bacteria_available_from_David_Mills(damills@ucdavis.edu)Contacts:_David_Mills_(damills@ucdavis.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Annotation_done_by_Kira_Makarova_and_Eugene_KooninFinishing_done_by_Fidelity_Systems_Inc._(Gaithersburg)URL_--_http://www.fidelitysystems.com_Project_Informationavailable_at:_http://genome.jgi-psf.org/mic_home.htmlThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 19-OCT-2011 Oenococcus_oeni_PSU-1,_complete_genome. NA Leuconostocaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Oenococcus_oeni_Q04GI9_OENOB.gb Oenococcus_Dicks_et_al._1995_emend._Endo_and_Okada_2006 116490126 Proc._Natl._Acad._Sci._U.S.A._103_(42),_15611-15616_(2006) NA NC_008528 NA NA Lactobacillales low_GC_Gram+ 17030793 1443 NA genomic_DNA NA PSU-1 NA Oenococcus_oeni_(Garvie_1967)_Dicks_et_al._1995 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 203123 Bacteria,_Firmicutes,_Lactobacillales,_Oenococcus Comparative_genomics_of_the_lactic_acid_bacteria NA NC_008528.1 CTAATTCTTATCAATTCTTGTTCTAAGTTCCAATTGAACACGTTCTAGTGATTTATTCCTTGTTTCCGGGGCAAATTTATAGACAAAAATGAATGAAATCAAGTTACAAAGAACGAAAATTCCGAAAGTTATCGAAAAACCAAAATAGTTTAAAAATATAGGGAAAAGAAAACCAACTAGGAAATTTGCCATCCAAAGAAAAAAAGTCGAGATTCCCATCCCTAAACCACGCAGGTTTTGAGGAAAAATTTCTGACATCAAAAGCCAAATCGTTGGTGAAATGCATCCCTGAAAGAAACTTAAAAAAATCAATGTTAAGAAGACTACACATACTGGAAGCAATTTTGAATGCGGCAATATTTGAGAAACGAGTGTAATCAATGCCAGGGCACCACCTGTACCTGCAATTCCCGTTAGCAACATTTTCCGACGATTGATGTGATTCATTAAATGCATACCGGTATATGTAGCCAAGACTGAAACAATCCCGTTGGCAATATTCGTAATTAAGGCGATATTATGGGTGAAACCGGCCTTGATTAATACGGTTGTTCCGTAATACATAATGATATTAATTCCAACGATTTGTTGAACAATTCCAAGCCCACTACCTAAGATAATTAGTTTTTTAATCCAGGGCTTTTTGAGATCATACCAACTTATATGGGAAACTTCTTTTTCTTTTTTTAGAGTAGCTTGAATTTGAGTGACTTCTTGTTGGCTTTGTCTCTTATCTGATCGAATTCCTTTTAGTATTTTTAAAGCAGTCTTGGTTTTGCCTTTCATAATCAGCCAGCGGGGAGATTCAGGAACGATCAGTGTACCGATAAAAAGCAATGCAGAAGGAATCATACCAAAAGCAATCATGTAACGCCAAATATTCGATACGTTAACAAAAATATTTCCTAAAATCGCATTGACCACAAAAGCCAATAACTGGCCTCCGGTAATCATTATTTCGTTTTGAGTGACCAAAGGTCCACGTAGTTTAACCGTAGCTATTTCGGATAGAAAAGTTGGAACAATTACTGATGCACTGCCGACTGCCAAGCCAAGTAGAAATCTGAAAATCATCATGATTATTGCATTAGGTGCTAATGAACAAATTGCAGTACAAAAAAAGAAGACAATCGATAGATAAAATAGAATTCTTTTTCTTCCATAACGATCAGCCAATCTTCCGGCAAATATTGCCCCAAAAGCTGCTCCTAAAGTAATACTGCTAGTAACTAATCCTTCAGTTGCAGGGTTGAGATTTAATTCTTGTTTTTTAGCCATGTAGGGCAGCGCCCCGTTAATTACTCCAGTGTCAACCCCGAACAGCAAACCACCAAGGGTGACACACAAGGCTATTATTTTTAAATGTCGTTCGGCTTTGGATTTTGTCTTGATAAAATTCAAAGCATAATTTGTTTTTGATATATTCGTTTTCTTATTTTCCAT > 782 Oter_2188 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_pen:PSEEN3007_metabolite_MFS_transporter,_MHS_family general_substrate_transporter YP_001819071.1 11 MDPVTSVSPIPEEGIDRKHKLVIFASSLGTVFEWYDFYIFGTLAAFFGKLFFPAGNETAAYLSSLALFGVGFSVRPFGALVFGRIGDLVGRKYTFLVTIMVMGLSTAVIGFLPSFATIGWAAPIILVLLRLAQGLALGGEYGGAATYVAEHAPHGKRGIFTSWIQTTATLGLFLSLGVIGTTRLVMDAEAFNRWGWRIPFLFSFVLLAVSVYIRLKLQESPVYLEMKAQGNHSKAPLTESFARWPNAKLVLGALLGATAGQGVVWYAGQFYALFFLMATLKLYFIDAYALLSVALVIGAALLVFFGWLSDKIGRKYIMLSGFALAVLTYPTIFGGLTKAVNPALAHAMEQSPVTLHTTDYHGMAKLTLEAVADAATKIVKPAPPTKTIDQARAYLNAKGIPFDLAPATDPSVPLALEVDGKIITGFDAKAYDAAFAESLYSKITVTSADGKIVAADPEAVQRPKVILLLSILLAYVAMVYGPIAAYLVELFPTRIRYTSMSLPYHIGNGWFGGFLPLIATSICVYTGNIYAGLYYPMAIAAMSLIYGLFFLRETKDLDISR Verrucomicrobia_subdivision_4 Opitutus_terrae_PB90-1 Opitutus_terrae_PB90-1 NC_010571 2812550..2814235 van_Passel,M.W.,_Kant,R.,_Palva,A.,_Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_Del_Rio,T.,_Pitluck,S.,_Goltsman,E.,_Clum,A.,_Sun,H.,_Schmutz,J.,_Larimer,F.W.,_Land,M.L.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Richardson,P.P.,_Janssen,P.H.,_de_Vos,W.M._and_Smidt,H. NA 0:1686 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001032.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4042883Source_DNA_and_bacteria_available_from_Hauke_Smidt(Hauke.Smidt@wur.nl)Contacts:_Hauke_Smidt_(Hauke.Smidt@wur.nl)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-PGFFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 27-JAN-2012 Opitutus_terrae_PB90-1_chromosome,_complete_genome. NA subdivision_4 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Opitutus_terrae_B1ZNV1_OPITP.gb Opitutus_Chin_et_al._2001 182411826 J._Bacteriol._193_(9),_2367-2368_(2011) NA NC_010571 NA NA NA verrucomicrobia 21398538 1686 NA genomic_DNA NA PB90-1 NA Verrucomicrobiales_str._PB90-3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes Chlamydiales/Verrucomicrobia_group 452637 Bacteria,_Verrucomicrobia,_Opitutae,_Opitutales,_Opitutaceae,_Opitutus Genome_Sequence_of_the_Verrucomicrobium_Opitutus_terrae_PB90-1,_an_Abundant_Inhabitant_of_Rice_Paddy_Soil_Ecosystems NA NC_010571.1 TTATCGCGAGATATCGAGATCCTTCGTTTCGCGCAGGAAGAACAGGCCGTAGATCAGACTCATCGCGGCGATCGCCATCGGATAATAGAGCCCGGCGTAGATGTTGCCGGTGTAAACGCAGATCGACGTGGCGATCAGGGGCAGGAATCCGCCGAACCAGCCATTGCCGATGTGATACGGCAGCGACATCGAGGTGTAGCGGATTCGCGTGGGGAACAACTCGACGAGATAGGCCGCGATCGGGCCATACACCATCGCGACGTAGGCAAGCAGGATCGACAACAGCAGGATCACCTTCGGTCGCTGCACCGCTTCCGGATCGGCGGCCACGATCTTGCCATCGGCAGAGGTGACGGTGATCTTCGAATACAGGCTCTCCGCAAAGGCCGCATCATAGGCCTTCGCGTCGAAGCCGGTGATGATCTTCCCGTCCACCTCGAGCGCCAGCGGCACGGACGGATCAGTCGCGGGCGCGAGATCGAAGGGAATGCCCTTCGCGTTGAGGTAGGCGCGCGCCTGGTCGATTGTCTTGGTCGGCGGCGCCGGCTTGACGATCTTTGTCGCGGCGTCGGCCACGGCTTCGAGCGTCAGCTTGGCCATGCCGTGATAGTCGGTGGTGTGAAGCGTGACCGGCGACTGCTCCATTGCGTGAGCCAGTGCGGGATTCACGGCCTTGGTCAATCCGCCAAAAATCGTCGGATACGTCAGCACCGCGAGCGCGAAGCCGGAGAGCATGATGTATTTCCGGCCGATCTTGTCGGAGAGCCAGCCGAAGAACACGAGCAGCGCGGCGCCAATCACGAGCGCGACCGACAGCAGCGCGTAGGCGTCGATGAAGTAGAGCTTGAGCGTCGCCATCAGGAAGAAGAGCGCGTAGAACTGGCCGGCATACCAGACGACGCCCTGGCCGGCGGTGGCGCCGAGCAGTGCACCGAGCACAAGCTTGGCGTTGGGCCAGCGCGCGAAGCTTTCGGTGAGCGGCGCCTTCGAGTGGTTGCCCTGTGCCTTCATCTCCAGGTACACCGGCGACTCCTGCAGTTTCAGTCGGATGTAGACCGACACGGCGAGCAGCACGAACGAGAAGAGGAACGGAATCCGCCAGCCCCAGCGATTGAAGGCCTCGGCGTCCATCACCAACCGCGTCGTGCCGATGACGCCGAGCGAAAGGAACAGCCCGAGCGTGGCCGTGGTTTGGATCCAGCTGGTGAAAATGCCGCGTTTGCCGTGCGGCGCGTGTTCGGCCACGTAGGTCGCGGCGCCGCCGTATTCGCCGCCGAGTGCGAGGCCTTGCGCCAGTCGCAGCAGCACGAGGATGATCGGCGCGGCCCAGCCGATCGTGGCGAACGACGGCAGGAATCCGATCACCGCCGTCGACAGGCCCATCACCATGATGGTGACGAGAAAGGTGTATTTGCGTCCGACCAGGTCGCCGATCCGGCCGAACACGAGCGCGCCGAACGGGCGGACGGAGAAGCCGACGCCGAACAGCGCGAGACTCGAAAGGTAAGCCGCCGTTTCATTGCCGGCGGGGAAGAAGAGCTTGCCGAAAAACGCCGCGAGCGTCCCGAAGATGTAGAAATCATACCATTCGAAGACGGTGCCGAGCGACGAGGCGAAGATGACCAGCTTGTGTTTGCGATCGATGCCTTCCTCGGGGATCGGCGAGACGGAGGTAACAGGGTCCAT > 783 PPSC2_c1060 NA sugar_transporter YP_003945283.1 11 MGVIIHNESAQQKALQSEKPSMLFVTLVSIVAALGGILFGFDIAVVSGAVEFLQQRFSLSEFQVGWAVSSLIVGSITGAALSGYMSERIGRKKVLLAAGFLFVVGSICSAIQDSFTGYVIFRMIGGVGIGITSTICPVYNAEIAPAKYRGRLVALNQLAIVTGIFLVYFQNSWIVSLGDEAWGVSTAWRWMFGVGAVPGLIFMLLMLFIPESPRWLIKKNRPYEALPILLKIHGEEAAKQEVLDIKESFKNENDSLKQLFAPGIRVALFIGIMLAIMQHITGINAILYYAPVIFKGMGLGTDASLTQTIWIGLINVLFTIVSVWLIDKAGRKVLLMIGTSLMTLCLVIIGAAFKMGLTTGPLVLIMILIYVASYAISLGPIVWVMISEIFPNRIRGKAVAIASMALWAGDYLVSQAFPPLLSSAGPSNTFWIFGAISLFVVVFIWRKVPETKGRSLEQMENMWLGK Bacillus/Lactobacillus/Streptococcus_group Paenibacillus_polymyxa_SC2 Paenibacillus_polymyxa_SC2 NC_014622 1204466..1205866 Ma,M.,_Wang,C.,_Ding,Y.,_Li,L.,_Shen,D.,_Jiang,X.,_Guan,D.,_Cao,F.,_Chen,H.,_Feng,R.,_Wang,X.,_Ge,Y.,_Yao,L.,_Bing,X.,_Yang,X.,_Li,J._and_Du,B. NA 0:1401 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002213.Source_DNA_and_bacteria_are_available_from_Binghai_Du:bhdu@sdau.edu.cn.COMPLETENESS:_full_length. NA 18-NOV-2011 Paenibacillus_polymyxa_SC2_chromosome,_complete_genome. NA Paenibacillaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Paenibacillus_polymyxa_E3EEB9_PAEPS.gb rRNA_group_3_bacilli 310639471 J._Bacteriol._193_(1),_311-312_(2011) NA NC_014622 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 21037012 1401 NA genomic_DNA NA SC2 NA Paenibacillus_polymyxa_(Prazmowski_1880)_Ash_et_al._1994 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 886882 Bacteria,_Firmicutes,_Bacillales,_Paenibacillaceae,_Paenibacillus Complete_Genome_Sequence_of_Paenibacillus_polymyxa_SC2,_a_Strain_of_Plant_Growth-Promoting_Rhizobacterium_with_Broad-Spectrum_Antimicrobial_Activity NA NC_014622.1 TTATTTTCCGAGCCACATATTTTCCATTTGTTCAAGTGATCTCCCCTTGGTTTCGGGAACCTTGCGCCATATAAAGACTACGACGAACAACGAGATGGCTCCGAATATCCAAAAGGTATTGGAGGGACCTGCTGAACTTAGCAGGGGAGGGAATGCCTGGGAGACCAGATAATCACCGGCCCATAGTGCCATCGAAGCAATGGCGACAGCTTTGCCGCGAATGCGGTTCGGAAAGATCTCCGAGATCATGACCCATACGATTGGCCCAAGCGATATAGCGTAGGAGGCCACGTAGATCAATATCATGATCAGCACGAGCGGTCCGGTAGTTAAACCCATTTTGAATGCGGCTCCAATAATGACCAAGCAGAGGGTCATCAACGAGGTACCGATCATCAGCAGAACTTTTCGTCCCGCTTTGTCGATCAGCCATACGGATACGATGGTAAACAACACATTGATCAACCCGATCCAGATGGTCTGGGTCAAAGAAGCGTCCGTACCGAGCCCCATTCCTTTAAAGATAACCGGCGCATAATACAAAATGGCATTGATGCCGGTAATATGCTGCATAATGGCGAGCATAATACCGATAAAGAGAGCGACCCGAATACCGGGAGCGAACAATTGTTTTAATGAGTCGTTCTCATTTTTGAACGATTCCTTGATATCAAGTACTTCCTGTTTAGCGGCTTCTTCACCGTGAATTTTCAGCAGAATTGGCAGCGCTTCATAAGGCCGATTCTTTTTGATAAGCCATCTTGGGCTTTCGGGTATGAAGAGCATCAAGAGCATAAAGATTAGTCCGGGAACAGCCCCCACTCCGAACATCCAGCGCCAGGCGGTTGAGACACCCCAGGCTTCATCCCCCAAGCTGACGATCCACGAATTCTGAAAATAAACCAGGAAAATGCCCGTTACGATCGCCAGCTGATTTAAAGCAACCAAACGGCCTCGGTATTTGGCGGGAGCGATCTCTGCGTTATACACCGGACAAATGGTGGAAGTGATTCCTATGCCGACGCCGCCGATCATGCGAAAGATAACATACCCGGTGAACGAATCTTGAATCGCAGAGCAAATCGAGCCGACGACGAATAAAAATCCGGCAGCCAGCAATACCTTTTTTCTGCCGATTCTTTCACTCATGTAGCCAGAGAGAGCCGCTCCTGTGATACTCCCTACAATCAGACTCGACACCGCCCAACCAACCTGAAATTCGCTCAGCGAAAAACGCTGCTGTAGGAATTCGACTGCCCCCGAAACAACCGCGATATCAAAACCGAACAGTATGCCTCCAAGCGCGGCTACGATGGATACCAGCGTCACAAACAGCATACTGGGTTTTTCTGATTGAAGCGCTTTCTGTTGAGCGCTTTCATTATGGATGATTACTCCCAT > 784 Pjdr2_1340 TIGRFAM:_sugar_transporter;_PFAM:_general_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bsu:BSU33960_permease sugar_transporter YP_003010102.1 11 MSSLTANANGKSMKFVTLVSMIAALGGLLFGFDTAVVSGAIGFMQDRFDLNEVEVGWAVSSLIIGCIVGAGFSGVLSDRFGRKKVLIAAAALFIIGSIGSAIPDTFSMYIVARMIGGLGIGITSTLCPLYNAEIAPAKYRGRLVALNQFATVTGIFLVYFVNSGIAGYGDDAWDIANAWRWMFGIGVVPGVIFFVLLFLVPESPRWLIKQGRSEQALHILLRIHGEEEAKQEVLDIKASFAEEKGSSLKEIFRPGIRLALIVGVVLAVLQQVTGINAVMYYAPEIFKSMGSGTDSSLLQTILIGLVNFLFTILAIWLIDKVGRKVLLLVGSSVMTICLAVIGIAFHTGHTTGSLVLIFILIYVAAFAVSLGPVVWVVLSEIFPNRVRGRATAIASMALWIADYVVSQSFPPMLESAGPSVTFWIFGAMSLITFLFTMRVVPETKGKSLEEIEASWSK Bacillus/Lactobacillus/Streptococcus_group Paenibacillus_sp._JDR-2 Paenibacillus_sp._JDR-2 NC_012914 1600593..1601966 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ovchinnikova,G.,_Shanmugam,K.T.,_Ingram,L.O._and_Preston,J. NA 0:1374 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001656.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4043135Source_DNA_and_bacteria_available_from_James_Preston(jpreston@ufl.edu)Contacts:_James_Preston_(jpreston@ufl.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Paenibacillus_sp._JDR-2GOLD_Stamp_ID_::_Gi02023Greengenes_ID_::_270979Isolation_Site_::_Sweet_gum_stem_wood_buried_in_surface_soilOxygen_Requirement_::_Aerobecell_Shape_::_Rod-shapedsporulation_::_SporulatingTemperature_Range_::_MesophileTemperature_Optimum_::_30_CGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Host,_WoodPhenotypes_::_methylglucuronoxylan_utilization##Metadata-END##COMPLETENESS:_full_length. NA 24-JAN-2012 Paenibacillus_sp._JDR-2_chromosome,_complete_genome. NA Paenibacillaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Paenibacillus_sp_C6CWF3_PAESJ.gb rRNA_group_3_bacilli 251794036 Unpublished NA NC_012914 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1374 NA genomic_DNA NA JDR-2 NA Paenibacillus_sp._JDR-2 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 324057 Bacteria,_Firmicutes,_Bacillales,_Paenibacillaceae,_Paenibacillus Complete_sequence_of_Paenibacillus_sp._JDR-2 NA NC_012914.1 TTATTTACTCCAGGAAGCCTCGATTTCCTCGAGCGACTTACCTTTCGTCTCCGGTACAACGCGCATCGTAAACAGGAACGTAATCAGCGACATCGCGCCAAAGATCCAGAACGTTACGGATGGTCCTGCCGATTCCAGCATTGGCGGGAACGATTGGGATACAACGTAGTCGGCAATCCATAGCGCCATCGACGCGATTGCGGTAGCCCGGCCGCGGACGCGGTTCGGGAAGATCTCGCTCAGGACGACCCATACGACAGGTCCAAGCGATACGGCGAATGCCGCTACATAGATCAGGATAAAGATCAGGACAAGCGAGCCGGTCGTATGGCCGGTATGGAATGCAATCCCGATAACCGCCAGACAGATCGTCATTACGGATGAACCAACAAGCAGCAATACCTTGCGGCCGACTTTATCGATCAGCCAGATAGCCAGAATCGTAAACAGGAAGTTAACGAGGCCAATCAGAATCGTTTGCAGCAGGGACGAATCCGTGCCGGAGCCCATCGATTTGAAAATTTCCGGCGCGTAATACATGACCGCATTAATACCGGTCACTTGCTGAAGAACCGCAAGCACGACACCAACGATCAACGCAAGGCGGATGCCCGGGCGGAAAATCTCTTTGAGCGAGCTGCCTTTTTCCTCAGCGAAAGAGGCTTTAATATCGAGAACTTCCTGCTTCGCCTCTTCTTCACCGTGGATGCGAAGAAGGATATGGAGAGCTTGCTCCGAACGACCTTGCTTGATCAGCCATCTTGGGCTTTCCGGAACAAGGAAGAGCAGAACGAAGAAAATAACGCCCGGCACAACGCCTATGCCAAACATCCAGCGCCATGCGTTTGCAATATCCCAAGCATCATCGCCATAACCGGCAATACCCGAGTTGACGAAGTAAACAAGGAAGATACCCGTAACCGTTGCGAATTGGTTCAAAGCAACGAGACGGCCGCGGTATTTAGCCGGGGCAATCTCCGCGTTATACAGCGGGCAAAGCGTGGACGTAATCCCGATCCCAAGACCGCCGATCATGCGGGCGACGATGTACATCGAGAACGTATCCGGAATCGCGGAGCCAATCGAACCGATAATGAATAGGGCTGCCGCCGCGATAAGTACTTTTTTACGACCGAAACGGTCGCTTAGCACGCCAGAGAATCCCGCGCCAACAATACATCCGATAATAAGCGAGGATACGGCCCAGCCGACCTCCACCTCGTTTAAGTCAAAACGGTCTTGCATAAATCCGATTGCTCCCGACACGACAGCGGTATCGAAGCCGAATAATAAACCGCCAAGAGCGGCAATCATCGAAACGAGCGTAACAAACTTCATGCTTTTGCCATTGGCATTTGCAGTTAAGCTGCTCAC > 785 PANA_0607 Putative_HTH-type_transcriptional_regulator;_Similar_to_Pantoea_sp._At-9b,_transcriptional_regulator,_LacI_family_(NCBI:_ZP_05730064.1);_COG:_Transcription;_Subcellular_localization_as_predicted_by_Psort_2.0:_Cytoplasmic PurR YP_003518902.1 11 MWHRKRAGAILICQRTPSEYDEVTWQAALDEEGEVAKPVKTTVTRNDVAKAAGTSVAVVSYVINNGPRPVADATRQRVLAAIEQTGYRPNAAARALASGHTKTFGLVVPNISNPFVASMAHMLLQESLNHGHVMLLGDAGDDRKRELELIQGLLNRQVDGLFYNSVDRHPFIDIITASGTPLVMLDRVEAQPGVSMLRVDERQAAFQVCAHLLSHGYQQVGMISGPLDMLNAQDRIQGWRDAMQAHNVQIDESLIFPTTYTREGGYQATLRMIASQKLPRALFASNEGQAIGCIRALSQHGIRVPKDVAMVCFNGTEQSAYHVPALTTVRQPVKEMARCAIHMLKQWNGEARIESFPHHLEIGESCGCRPSQARVNKPNNEKTDY gamma_subgroup Pantoea_ananatis_LMG_20103 Pantoea_ananatis_LMG_20103 NC_013956 698781..700265 De_Maayer,P.,_Chan,W.Y.,_Venter,S.N.,_Toth,I.K.,_Birch,P.R.,_Joubert,F._and_Coutinho,T.A. NA 1429:>1485 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001875.On_May_4,_2011_this_sequence_version_replaced_gi:291615553.COMPLETENESS:_full_length. NA 12-NOV-2011 Pantoea_ananatis_LMG_20103_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pantoea_ananatis_D4GJG3_PANAM.gb Pantoea_Gavini_et_al._1989_emend._Mergaert_et_al._1993 332139403 J._Bacteriol._192_(11),_2936-2937_(2010) NA NC_013956 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20348253 1485 NA genomic_DNA NA LMG_20103 NA Xanthomonas_uredovorus NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 706191 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Pantoea Genome_sequence_of_Pantoea_ananatis_LMG20103,_the_causative_agent_of_Eucalyptus_blight_and_dieback NA NC_013956.2 ATGTCGCCACCGGGGCGTTCTGCTCGTAGTCAGGGAACCGTCTCTCGGAATGGCATTTATCGATCTGCATATTTTCAAGGGACAGCGTTTATGACGGCACAGCACTCCGTTACGCAGCAGGCAGCACAGCCTTTCACCTCCGCCGCTGATGAGCGGTTTATTACCCCAGCCGGCCGCAAAGATTTTTGGCGCGCGACGGTTTCATGCTGGTTAGGGACGGCAATGGAGTACGCGGATTTCGCACTCTATGGCCTCGCCGCCGGCATTATCTTCGGTGATGTTTTCTTTCCTGAACAAACCCCCGCCATGGCGCTGCTTGCCAGCTTTGCAACCTGGTCGGTTGGATTTGTTGCCCGCCCTATCGGCGCGTTATTTTTTGGCTGGCTGGGCGATCGAAAAGGTCGCAAAGTCGTCATGGTAACCACCATTATTCTGATGGGCGCATCCACAACCCTAATCGGCTTGATTCCCAGCTACGCCTCCATTGGCATCTGGGCGCCTGCCTGTCTGGTTCTGCTACGTTTCAGTCAGGGGTTTGGCGCAGGCGCTGAGCTTTCCGGCGGAACCGTGATGCTGGGAGAATATGCGCCGGTTAAGCGGCGTGGCCTGGTGTCTTCCGTTATCGCCCTCGGCTCTAACAGCGGCACGCTGCTGGCATCGCTTGTCTGGCTGCTGGTGGTGCAGATGGATAAACAAAGCCTGCTGGAATGGGGATGGCGTATTCCCTTCCTGAGCAGCGCCGTCATTGCCCTTGTGGCACTTTGGATCCGCCGCAACCTGCGGGAAACCCCGGTGTTCGAGCGCAAGAAAGCGCAACTGGAAGCGGAGCGGGCGAACCTTATCGCCACGCAGCATCAGACGGTTGATACGCGCCCCTTCTTTCAGCGTACCCGTGCTTTCTGGACCATGGTCGGCTTACGTATTGGCGAAAACGGTCCCTCTTATCTGGCGCAGGGTTTTATCGTCGGGTATGTCGCTAAGGTCCTGATGGTCGATAAATCCGTGCCGACCACGGCGGTCTTTATTGCCTCGCTGCTCGGCTTCCTGATTATTCCCCTGGCCGGCTGGCTGTCAGACCGCTTTGGTCGCCGGGTCGTTTATCGGGTTTTTTGCCTGTTGCTGATGATTTATGCCTGGCCAGCCTTTACGCTGCTGGATACGCGCGAACCTGCGATTGTTATCCCGGTTATCGTGGTGGGCATGGCGCTGGCTTCTCTGGGCATCTTTGGCGTCCAGGCGGCCTGGGGCGTGGAACTGTTTGGCGTGAACCACCGTTATACTAAGATGGCCGTGGCCAAAGAGCTGGGCTCGATTATTTCAGGTGGCACTGCACCTTTGGTGGCGGCGGCGATGCTGTCGTACACCGGGCACTGGTGGTCCATTGCGATCTATTTCTCAGCGATGGCTTCCATTGGTTTCCTGACTACCTTTGTGGCACCGGAAACGCGCGGGCGCGATCTTAATCTGCCAGAGGACGCCATCTGA > 786 PanABDRAFT_1033 KEGG:_spe:Spro_3179_major_facilitator_superfamily_metabolite/H(+)_symporter;_TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_General_substrate_transporter metabolite/H+_symporter,_major_facilitator_superfamily_(MFS) EFM20625.1 11 MQTTSPMTHRARIGAIFRVTSGNFLEQFDFFLFGFYATYIAHTFFPASSEFASLMMTFAVFGAGFLMRPIGAVVLGAYIDKVGRRKGLIVTLSIMAAGTFMIVLIPSYQSIGLWAPMLVLIGRLLQGFSAGAELGGVSVYLAEIATPGRKGFYTSWQSGSQQVAIMVAAAMGFILNAVLEESAIREWGWRIPFLFGCLIVPFIFILRRKLEETQAFNNRRSHPDVKQVFRILLANWQVVIAGMLMVAMTTTAFYLITVYAPTFGKKVLLLSASDSLLVTLLVAVSNFIWLPIGGAISDRFGRKPVLVGMTLLAIVTTYPALSMLAAAPGFSMMLGVLLWLSMIYGLYNGAMIPALTEIMPAEVRVAGFSLAYSLATALFGGFTPVMSTGLIEMTGDKASPGYWMSFAAVCALGATLYLYRRTRSAVTPAHETVS gamma_subgroup Pantoea_sp._aB Pantoea_sp._aB AEDL01000003 59176..60480 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Land,M.L.,_Hauser,L.,_Chang,Y.-J.,_Jeffries,C.,_Adams,A.,_Adams,S.,_Raffa,K.,_Currie,C._and_Woyke,T.J. NA 0:1305 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4088228Source_DNA_and_Organism_available_from_Cameron_Currie(currie@bact.wisc.edu)Contacts:_Cameron_Currie_(currie@bact.wisc.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Pantoea_sp._aBcollection_date_::_Not_applicablelat_lon_::_Not_applicabledepth_::_Not_applicablealt_elev_::_Not_applicablecountry_::_Not_applicableenvironment_::_Hostnum_replicons_::_Not_applicableref_biomaterial_::_Not_applicablebiotic_relationship_::_Free_livingtrophic_level_::_Not_applicablerel_to_oxygen_::_Facultativeisol_growth_condt_::_Not_applicablesequencing_meth_::_WGSassembly_::_Newbler_v._2.3finishing_strategy_::_Finished##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_32xSequencing_Technology_::_454/Illumina##Genome-Assembly-Data-END####Metadata-START##GOLD_Stamp_ID_::_Gi07251rel_to_oxygen_::_FacultativeCell_Shape_::_Rod-shapedMotility_::_NonmotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileGram_Staining_::_Gram-Diseases_::_Leaf_blight,_Stewarts_bacterial_wiltPhenotypes_::_Pathogen##Metadata-END## NA 20-AUG-2010 Pantoea_sp._aB_ctg00024,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pantoea_sp_E0LV39_9ENTR.gb Pantoea_Gavini_et_al._1989_emend._Mergaert_et_al._1993 304356184 Unpublished NA AEDL01000003 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1305 NA genomic_DNA NA aB NA Pantoea_sp._aB NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 517433 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Pantoea The_draft_genome_of_Pantoea_sp._aB NA AEDL01000003.1 TCAGCTAACAGTTTCATGGGCAGGCGTGACGGCACTGCGGGTACGACGATAGAGGTAGAGTGTCGCGCCCAGGGCGCAAACTGCCGCAAAACTCATCCAGTAACCTGGCGAGGCTTTATCGCCAGTCATCTCAATCAGGCCGGTTGACATCACGGGGGTAAAACCACCGAACAGCGCTGTTGCCAGGCTATAGGCCAGTGAGAAGCCCGCCACACGGACTTCCGCTGGCATAATTTCGGTCAGCGCCGGGATCATCGCGCCGTTGTAGAGCCCGTAGATCATCGACAGCCACAGCAGCACACCCAGCATCATCGAAAAGCCTGGTGCCGCCGCCAGCATGCTCAGGGCCGGATAGGTGGTGACGATCGCCAGCAGTGTCATGCCGACCAGTACAGGCTTACGGCCAAAGCGGTCGGAGATCGCGCCGCCAATCGGCAGCCAGATAAAGTTCGACACTGCTACCAGCAAGGTCACCAGCAGGCTGTCAGAGGCGCTGAGCAGCAGCACTTTTTTGCCAAAGGTCGGCGCATAAACCGTAATCAGGTAAAACGCCGTGGTGGTCATCGCCACCATCAGCATCCCGGCAATCACCACCTGCCAGTTAGCCAGCAGGATGCGGAACACCTGCTTCACATCGGGATGGCTGCGACGGTTGTTGAACGCCTGTGTCTCTTCAAGTTTGCGACGCAATATGAAGATAAACGGCACAATCAGACAGCCAAACAGGAACGGAATACGCCAGCCCCATTCACGGATGGCGCTCTCTTCCAGCACGGCGTTGAGGATAAAGCCCATCGCCGCCGCCACCATAATGGCGACCTGCTGGCTACCCGACTGCCAGCTGGTGTAGAAGCCCTTGCGGCCCGGCGTGGCGATCTCCGCCAGATAGACCGACACGCCGCCCAGCTCCGCGCCGGCGGAGAAGCCCTGTAACAACCGACCGATCAGCACCAGCATCGGCGCCCACAGGCCAATGCTCTGGTAGGAGGGGATCAGCACGATCATAAAGGTGCCTGCCGCCATGATGGAGAGCGTGACAATCAGGCCCTTACGGCGACCGACCTTGTCGATGTACGCCCCCAGCACCACTGCGCCAATCGGGCGCATCAGAAATCCTGCGCCGAACACGGCAAAGGTCATCATCAGTGAGGCGAACTCACTGCTGGCCGGGAAAAAGGTATGGGCGATGTAAGTGGCATAAAAACCGAACAGGAAGAAATCGAACTGTTCGAGGAAATTGCCGGAGGTAACACGAAATATGGCGCCAATCCTGGCGCGATGAGTCATGGGTGAGGTCGTTTGCAT > 787 Pvag_pPag30523 NA MFS_family_transporter YP_003730264.1 11 MSTNTPDAGEAGDHAPADTVRQRIFLVVLVATMGALAFGYDTGIISGALPYMTSPPDQGGLGLNSFTEGLVASSLVFGAAIGSFLSGFFSDRFGRRITLRTLAVIFVLGSLGTALAPSVNVMVAMRFLLGIAVGGGSSTVPVFIAEIAGPRLRAPLVSRNELMIVTGQLIAYVASTLLSYLLHDEHLWRYMLAIAMVPGFLLFIGTFFVPASPHWLVAEGRLKEAKKILKYLRETPREVRHEMAQMKKQARAAERGPDAKTLIREKWVIRLMIIGVGLGFVAQFTGVNGFMYYTPIILKQTGLGTSASIAATIGNGVVSVLATFVGIWAISRFPRRTMLITGLCLVITAQILLGSVMTFMSSGLMQSYLALGCILLFLFCMQMCISPVYWLMMSELFPMQLRGVLTGGAVSLQWIFNAVVAFGFPPIMAYAGSTTFFIFAAINVGSLIFVMTMVPETRGKSLEEIESHMKEKFGEKPKEAEAC gamma_subgroup Pantoea_vagans_C9-1 Pantoea_vagans_C9-1 NC_014258 516856..518307 Smits,T.H.,_Rezzonico,F.,_Kamber,T.,_Goesmann,A.,_Ishimaru,C.A.,_Stockwell,V.O.,_Frey,J.E._and_Duffy,B. NA 0:1452 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001895.COMPLETENESS:_full_length. NA 02-DEC-2010 Pantoea_vagans_C9-1_plasmid_pPag3,_complete_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pantoea_vagans_D6YRF9_PANVC.gb Pantoea_Gavini_et_al._1989_emend._Mergaert_et_al._1993 298717099 J._Bacteriol._192_(24),_6486-6487_(2010) NA NC_014258 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20952567 1452 NA genomic_DNA NA C9-1 NA Pantoea_vagens NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 712898 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Pantoea Genome_Sequence_of_the_Biocontrol_Agent_Pantoea_vagans_Strain_C9-1 NA NC_014258.1 TTAGCAGGCTTCAGCCTCCTTGGGCTTTTCACCAAACTTTTCTTTCATGTGTGACTCAATCTCTTCCAGACTTTTGCCCCGCGTCTCGGGCACCATCGTCATCACGAAGATCAGCGAGCCGACGTTAATCGCAGCAAAGATAAAGAAGGTCGTGCTGCCGGCATACGCCATGATCGGTGGAAAACCGAACGCGACCACAGCATTGAAAATCCACTGTAGTGAGACAGCGCCACCGGTTAAAACGCCACGCAGCTGCATCGGGAACAGCTCTGACATCATCAGCCAGTAGACCGGCGAGATGCACATCTGCATACAGAACAGGAACAGCAGAATACAGCCAAGAGCGAGGTAGCTCTGCATCAGGCCTGAGCTCATAAAGGTCATCACGCTGCCCAGCAGAATCTGTGCGGTAATCACCAGACATAAACCGGTGATGAGCATAGTACGACGCGGGAAGCGGCTGATCGCCCAGATACCGACAAAGGTCGCCAGAACAGACACCACGCCGTTACCAATGGTCGCGGCAATCGACGCGCTGGTGCCAAGTCCGGTCTGTTTAAGGATGATCGGCGTGTAATACATGAAGCCATTAACGCCGGTAAACTGCGCAACAAAGCCGAGTCCGACACCAATAATCATCAGGCGGATAACCCACTTCTCACGAATCAGGGTTTTCGCATCCGGCCCGCGTTCCGCTGCCCTCGCCTGCTTCTTCATCTGTGCCATCTCATGACGCACCTCACGCGGTGTTTCACGCAGATACTTAAGAATCTTCTTCGCCTCTTTCAGACGCCCTTCCGCCACCAGCCAGTGTGGTGAAGCCGGAACGAAGAAGGTGCCGATAAACAGCAGGAAACCGGGCACCATCGCAATCGCCAGCATGTAGCGCCACAGGTGCTCATCATGCAGCAGATAGCTCAGTAGCGTACTGGCGACATAGGCAATGAGCTGGCCGGTAACGATCATCAGCTCATTGCGGCTCACCAGCGGCGCACGCAGACGTGGCCCGGCAATTTCGGCAATGAACACCGGTACGGTTGAAGAGCCACCGCCGACAGCAATTCCCAGCAGGAAGCGCATGGCCACCATCACATTGACGGAAGGCGCCAGTGCCGTACCAAGGGAACCCAGTACAAAAATGACCGCCAGGGTGCGAAGGGTAATGCGACGGCCAAAACGGTCCGAGAAGAAACCACTGAGGAAAGAGCCGATAGCGGCACCAAACACCAGCGAAGAGGCGACGAGCCCTTCCGTGAATGAGTTCAGTCCCAAACCACCCTGATCGGGTGGCGAAGTCATGTAAGGTAATGCACCCGAGATAATCCCGGTGTCATAGCCAAAAGCCAGCGCGCCCATAGTGGCAACCAGCACCACTAAAAAAATGCGCTGGCGTACCGTATCCGCAGGCGCGTGATCGCCCGCTTCCCCAGCGTCTGGTGTATTTGTACTCAT > 788 Pvag_2555 Permeases_of_the_major_facilitator_superfamily galactose-proton_symporter YP_003932165.1 11 MPGNTHKSRTSNKAMTLFVCFLAALAGLLFGLDIGVIAGALPFIAKDFNVTPHQQEWIVSSMMFGAAVGAIGSGWMSSRLGRKKSLMAGAILFVIGSLWSAMSPNPEMLISARVLLGLAVGIASYTAPLYLSEIAPEKIRGSMISLYQLMITIGILGAYLTDTAFSFTGNWRWMLGIITIPALLLLIGVFFLPNSPRWLAARGNFRDAQRVLDRLRDTSEQAKRELEEIRESLKVKQSGWGLFTSSSHFRRAVYLGILLQVMQQFTGMNVIMYYAPKIFEIAGFTNTTQQMWGTVIVGLVNVLATFIAIGLVDRWGRKPTLILGFMVMAAGMGVLGTMLHFGIHSAGAQYFAVGMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITVSTTTNWIANMIVGATFLTMLNTLGNANTFWVYALLNLFFILLTVMLIPETKNVSLEHIERNLMAGKKLRDIGSRD gamma_subgroup Pantoea_vagans_C9-1 Pantoea_vagans_C9-1 NC_014562 2728458..2729855 Smits,T.H.,_Rezzonico,F.,_Kamber,T.,_Goesmann,A.,_Ishimaru,C.A.,_Stockwell,V.O.,_Frey,J.E._and_Duffy,B. NA 0:1398 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002206.COMPLETENESS:_full_length. NA 26-JAN-2012 Pantoea_vagans_C9-1_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pantoea_vagans_E1SDM7_PANVC.gb Pantoea_Gavini_et_al._1989_emend._Mergaert_et_al._1993 308185541 J._Bacteriol._192_(24),_6486-6487_(2010) NA NC_014562 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20952567 1398 NA genomic_DNA NA C9-1 NA Pantoea_vagens NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 712898 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Pantoea Genome_Sequence_of_the_Biocontrol_Agent_Pantoea_vagans_Strain_C9-1 NA NC_014562.1 ATGCCTGGCAATACACACAAAAGCAGAACTTCAAATAAGGCGATGACCTTATTTGTCTGCTTTCTGGCGGCCCTTGCGGGACTGCTGTTCGGTCTGGATATCGGCGTTATCGCCGGTGCCCTGCCGTTTATCGCAAAGGACTTTAACGTTACTCCCCACCAGCAGGAGTGGATCGTCAGTTCCATGATGTTTGGTGCGGCGGTCGGTGCTATCGGCAGCGGCTGGATGTCATCCCGCCTGGGCCGTAAAAAAAGCCTGATGGCCGGTGCGATTCTGTTCGTTATCGGTTCACTCTGGTCAGCGATGTCGCCAAACCCGGAAATGCTGATCAGCGCCCGCGTTCTGCTGGGCCTGGCCGTCGGTATTGCCTCTTATACCGCCCCGCTTTATCTTTCTGAGATCGCTCCGGAAAAAATTCGCGGCAGTATGATTTCGCTTTACCAGCTGATGATCACCATCGGTATTCTGGGTGCTTACCTTACCGATACCGCCTTCAGCTTTACCGGCAACTGGCGCTGGATGCTGGGCATCATCACCATTCCGGCTCTGCTGTTGCTGATCGGTGTTTTCTTCCTGCCAAACAGCCCACGCTGGCTGGCGGCGCGAGGCAACTTCCGCGATGCGCAACGCGTACTGGATCGTCTGCGTGACACCAGTGAGCAGGCAAAACGTGAGCTGGAAGAGATTCGTGAAAGCCTGAAGGTCAAGCAGTCTGGCTGGGGGCTGTTCACCAGCAGCAGCCACTTCCGTCGTGCGGTCTATCTGGGCATCCTGTTGCAGGTCATGCAGCAGTTTACCGGTATGAACGTCATCATGTACTACGCACCAAAAATCTTTGAAATCGCGGGCTTCACCAACACCACCCAGCAGATGTGGGGTACGGTGATTGTGGGTCTGGTCAATGTACTGGCGACCTTCATCGCTATTGGTCTGGTGGATCGCTGGGGCCGTAAACCTACCCTGATTCTGGGCTTTATGGTGATGGCAGCCGGTATGGGCGTGCTGGGTACGATGCTGCACTTCGGTATTCACTCCGCGGGCGCACAGTACTTCGCGGTCGGTATGCTGCTGATGTTTATCGTTGGTTTTGCGATGTCAGCCGGTCCGTTGATCTGGGTGCTCTGTTCCGAAATTCAGCCGCTGAAAGGCCGCGATTTCGGTATCACGGTTTCCACGACCACCAACTGGATCGCCAACATGATCGTGGGTGCGACCTTCCTGACGATGCTGAATACGCTGGGCAACGCGAACACCTTCTGGGTCTACGCACTGCTTAACCTGTTCTTCATTCTGTTGACCGTGATGCTGATTCCTGAGACCAAAAACGTCTCGCTGGAACACATCGAACGTAACCTGATGGCAGGTAAGAAACTGCGCGACATCGGTTCACGTGACTAA > 789 BDI_3294 NA sugar_transporter YP_001304621.1 11 MRNTSYRYWMIYVIAIVAAMGGLLFGFDTGVISGAIPFFQKDFGIDDSMVEVVTSSGLLGAILGALCCGKLTDRIGRRKVILTSAVIFAIGALWSGWAPGIYHLIAARLFLGVAIGISSFAVPLYIAEVSPAKSRGMFVAMFQLMITIGLLVSYLSDLYFADETSVSCWRPMFYVGVIPAIILFVGMLLVPPSPRWLMSVGREEESLSVLKMIEHPDQVNVSFEQMRNEMRKNDEQQGRFKDLAQPWLRNALVIAIGIMFFQQFVGINTVIYYSPKIFLMAGFDGAVSAIGASVGVGVVNLLFTLLSVYFVDRLGRRKLYFLGLSGIVISLSLLATSFIFAAQLGDSGKWLSIVLIFLYVGFFAISIGPLGWLIVSEVFPQKLRGLGASLGSLSVWFFNAIVSFTFFKILKVFSIQGTDLTINGESQGNPAGAFLFYAFIGIVAIIWGYFYVPETKGVSLENIEAFWRKGGHPKDKII Bacteroidia Parabacteroides_distasonis_ATCC_8503 Parabacteroides_distasonis_ATCC_8503 NC_009615 3982909..3984345 Xu,J.,_Mahowald,M.A.,_Ley,R.E.,_Lozupone,C.A.,_Hamady,M.,_Martens,E.C.,_Henrissat,B.,_Coutinho,P.M.,_Minx,P.,_Latreille,P.,_Cordum,H.,_Van_Brunt,A.,_Kim,K.,_Fulton,R.S.,_Fulton,L.A.,_Clifton,S.W.,_Wilson,R.K.,_Knight,R.D._and_Gordon,J.I. NA 0:1437 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000140.COMPLETENESS:_full_length. NA 26-JAN-2012 Parabacteroides_distasonis_ATCC_8503_chromosome,_complete_genome. NA Porphyromonadaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Parabacteroides_distasonis_A6LH35_PARD8.gb Parabacteroides_Sakamoto_and_Benno_2006 150006674 PLoS_Biol._5_(7),_E156_(2007) NA NC_009615 NA NA Bacteroidales Cytophaga-Flexibacter-Bacteroides_phylum 17579514 1437 NA genomic_DNA NA ATCC_8503 NA Ristella_distasonis NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 435591 Bacteria,_Bacteroidetes,_Bacteroidia,_Bacteroidales,_Porphyromonadaceae,_Parabacteroides Evolution_of_symbiotic_bacteria_in_the_distal_human_intestine NA NC_009615.1 ATGAGAAACACGAGTTATAGATATTGGATGATTTATGTGATAGCGATTGTCGCCGCCATGGGAGGACTATTGTTTGGTTTTGATACCGGCGTGATTTCCGGGGCAATTCCTTTCTTCCAGAAAGATTTTGGCATAGACGATAGTATGGTGGAGGTCGTTACTTCCTCCGGTTTGCTGGGAGCTATTCTGGGAGCGCTGTGTTGTGGTAAGTTGACGGATCGCATAGGGCGTAGGAAAGTCATTTTGACTTCGGCTGTTATTTTCGCTATCGGTGCGTTATGGTCGGGATGGGCTCCGGGCATTTATCATTTGATCGCCGCCCGTTTATTCCTGGGGGTGGCTATCGGGATATCTTCTTTTGCGGTGCCTCTTTATATCGCAGAAGTTTCTCCGGCGAAATCACGGGGGATGTTTGTCGCCATGTTCCAATTGATGATTACGATCGGGCTTCTGGTATCTTATCTTTCGGATTTGTATTTTGCGGATGAGACGTCTGTTTCATGTTGGAGGCCGATGTTTTATGTGGGGGTGATTCCCGCTATTATTTTGTTCGTGGGTATGTTGCTGGTTCCACCATCTCCAAGGTGGTTGATGTCCGTTGGCAGGGAGGAGGAGAGTTTATCGGTCTTAAAGATGATCGAGCACCCGGATCAAGTAAATGTCTCATTTGAGCAGATGCGGAATGAGATGCGGAAAAATGATGAGCAACAAGGGCGTTTTAAGGATTTGGCTCAGCCTTGGTTGAGGAATGCGTTGGTTATCGCTATTGGTATCATGTTCTTCCAACAGTTCGTAGGTATCAATACGGTGATCTATTATAGTCCTAAAATATTCTTGATGGCCGGTTTCGATGGTGCGGTCTCTGCGATTGGGGCTTCTGTAGGGGTGGGAGTTGTCAATTTATTGTTCACGTTACTGTCTGTCTATTTCGTAGATCGGCTGGGAAGGCGTAAACTTTATTTTCTGGGGTTGAGCGGTATCGTGATTTCCTTGTCGCTACTCGCTACCTCTTTTATATTCGCCGCTCAATTAGGGGATTCCGGGAAATGGCTTTCCATTGTCCTTATTTTCTTATATGTGGGATTTTTCGCTATCAGCATCGGGCCTCTAGGTTGGTTGATTGTGTCGGAAGTGTTTCCACAAAAGTTAAGAGGGCTGGGGGCTTCTCTCGGTTCATTGTCCGTTTGGTTTTTCAATGCGATCGTATCGTTTACCTTTTTCAAGATACTGAAGGTATTCTCAATACAGGGAACCGATTTAACGATCAATGGCGAAAGCCAAGGGAATCCGGCAGGAGCGTTCTTATTTTATGCGTTTATTGGAATTGTGGCGATTATTTGGGGATATTTCTATGTACCGGAAACGAAAGGAGTTTCATTGGAGAATATCGAGGCTTTTTGGAGAAAAGGAGGACACCCGAAAGATAAAATAATATAA > 790 PRABACTJOHN_01021 KEGG:_cal:orf19.644_5.1e-41_HXT4;_high-affinity_glucose_transporter_or_sensor_K01804;_Psort_location:_CytoplasmicMembrane,_score:_10.00 hypothetical_protein EEC97574.1 11 MKNNNYIFGITLVATLGGLLFGYDTAVISGTVESLRKFFIEPFGLPLDQANALEGFVVSSALIGCILGASFAGWISQRYGRKPTLVLAAILFLLSAIGSAWPELFVGMPGSGDHTFMYLFVFYRIVGGVGVGLASMVSPMYIAEMAPAEKRGNLVSWNQFAIIFGMLVVYFVNYSIALQGDAAWLHAIGWRWMFASEIVPALLFLVLLMFVPETPRYLVMRGKTDKALSVLDRLMGKEKAAPELVEIKESFRKQEPSMRPYFLFMGMWLVLFLLLYGALELAGNTSALEIALIGSFFVSLIFPVGSFGILIIFVGVLLSGFQQFVGINVVLYYAPEIFKTMGAATDAALLQQIVVGAVNLSFTVLAIFTVDRFGRRPLMIIGALVMAVSMMILGTTFYTHSVGIGSLVCMLVYTAGFAMSWGPVCWVLL Bacteroidia Parabacteroides_johnsonii_DSM_18315 Parabacteroides_johnsonii_DSM_18315 ABYH01000073 5616..6903 Sudarsanam,P.,_Ley,R.,_Guruge,J.,_Turnbaugh,P.J.,_Mahowald,M.,_Liep,D._and_Gordon,J. NA 0:>1288 Parabacteroides_johnsonii_(GenBank_Accession_Number_for_16S_rDNAgene:_AB261128)_is_a_member_of_the_Bacteroidetes_division_of_thedomain_bacteria_and_has_been_isolated_from_human_feces._Thesequenced_strain_was_obtained_from_Deutsche_Sammlung_vonMikroorganismen_und_Zellkulturen_GmbH_(DSMZ)_(DSM_18315).This_is_a_Newbler_assembly(http://www.454.com/enabling-technology/the-software.asp)consisting_of_one_half_plate_of_a_Roche_454_FLX_paired_end_libraryrun_with_a_Q20_coverage_of_16.4X.This_sequenced_strain_is_part_of_a_comprehensive,_sequence-basedsurvey_of_members_of_the_normal_human_gut_microbiota._A_jointeffort_of_the_WU-GSC_and_the_Center_for_Genome_Sciences_atWashington_University_School_of_Medicine,_the_purpose_of_thissurvey_is_to_provide_the_general_scientific_community_with_a_broadview_of_the_gene_content_of_100_representatives_of_the_majordivisions_represented_in_the_intestines_microbial_community._Thisinformation_should_provide_a_frame_of_reference_for_analyzingmetagenomic_studies_of_the_human_gut_microbiome._Further_details_ofthis_effort_are_described_in_a_white_paper_entitled_Extending_OurView_of_Self:_the_Human_Gut_Microbiome_Initiative_(HGMI)(http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMISeq.pdf)._These_studies_are_supported_by_National_Human_GenomeResearch_Institute.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.For_answers_to_your_questions_regarding_this_assembly_or_project,or_any_other_GSC_genome_project,_please_visit_our_Genome_Groups_webpage_(http://genome.wustl.edu/genome_group_index.cgi)_and_email_thedesignated_contact_person.Annotation_was_added_to_the_contigs_in_December_2008.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC. NA 17-DEC-2008 Parabacteroides_johnsonii_DSM_18315_P_johnsonii-1.0_Cont5.13,_whole_genome_shotgun_sequence. NA Porphyromonadaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Parabacteroides_johnsonii_B7B7M3_9PORP.gb Parabacteroides_Sakamoto_and_Benno_2006 209948525 Unpublished NA ABYH01000073 NA NA Bacteroidales Cytophaga-Flexibacter-Bacteroides_phylum NA 1288 NA genomic_DNA NA DSM_18315 NA Parabacteroides_johnsonii_Sakamoto_et_al._2007 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 537006 Bacteria,_Bacteroidetes,_Bacteroidia,_Bacteroidales,_Porphyromonadaceae,_Parabacteroides Draft_genome_sequence_of_Parabacteroides_johnsonii_(DSM_18315) NA ABYH01000073.1 GTGAAAAACAACAACTACATTTTTGGAATCACCCTTGTGGCGACATTGGGGGGATTATTATTCGGATATGATACAGCGGTGATATCCGGGACGGTCGAATCGCTACGTAAATTCTTTATTGAACCTTTCGGACTACCATTGGATCAGGCGAATGCGCTTGAAGGATTCGTTGTAAGCAGTGCCCTGATCGGTTGTATATTAGGTGCTTCTTTTGCCGGTTGGATCAGCCAGCGGTATGGACGGAAACCTACGCTTGTGTTGGCTGCCATCCTGTTTTTGCTGTCGGCAATCGGTTCGGCATGGCCGGAACTGTTTGTCGGGATGCCTGGTAGCGGAGATCACACATTCATGTATCTTTTTGTGTTTTACCGGATTGTCGGAGGAGTAGGAGTTGGTTTGGCTTCTATGGTTTCTCCGATGTATATTGCCGAGATGGCACCGGCGGAAAAACGGGGAAATCTGGTGTCGTGGAACCAGTTTGCGATTATTTTCGGTATGCTTGTCGTCTATTTTGTAAATTACAGTATCGCGTTGCAGGGAGATGCCGCCTGGTTGCACGCGATTGGCTGGCGTTGGATGTTCGCGTCCGAGATCGTCCCGGCTTTACTTTTCCTGGTCCTTCTGATGTTTGTGCCGGAAACGCCCCGTTATTTGGTGATGCGCGGTAAAACAGATAAGGCGCTGTCCGTACTGGATCGCTTGATGGGAAAAGAAAAAGCGGCACCCGAACTGGTTGAAATAAAAGAAAGTTTCAGGAAACAGGAACCTTCCATGCGTCCTTACTTCTTATTTATGGGGATGTGGCTGGTGCTGTTTCTGCTTTTGTACGGAGCGTTGGAATTGGCTGGTAATACGAGTGCTTTGGAGATCGCTTTGATCGGTAGTTTTTTTGTGTCTTTGATCTTTCCGGTGGGTTCGTTCGGCATACTGATCATATTTGTCGGTGTCCTTCTGTCCGGTTTCCAGCAGTTTGTCGGGATCAATGTCGTGTTGTATTATGCGCCGGAGATATTTAAAACAATGGGAGCCGCCACCGATGCCGCTTTGTTGCAGCAGATCGTGGTAGGAGCTGTGAACCTCTCTTTTACCGTACTGGCTATCTTTACGGTCGACCGGTTCGGACGCCGTCCGCTTATGATTATCGGGGCATTGGTCATGGCCGTTTCGATGATGATCTTGGGGACGACTTTCTATACGCACTCCGTCGGTATCGGCTCGTTGGTTTGCATGTTGGTGTACACGGCTGGTTTTGCGATGTCATGGGGGCCGGTCTGTTGGGTATTGCTGG > 791 PABG_00816 NA maltose_permease_MAL61 EEH18253.1 NA MARVGNSDVVELATHDSVPIDTPKASNATMPESEIFDNAKSATDKEHRMTLLQGLRLYPKAVAWSVLISTCIVMEGYDICLVNNFYAFPQWNRKYGVQLEDGTYQVPARWQAALSNGAVVGEIIGLFINGWASERFGYRYTILTCLFFLSGFVTIFFTAAHVEALLVAEMLCGIPWGVFQTLCITYASEVCPVALRSYLTTYVNFCWGLGQLIGIGVLKAMLPRPDEWSYRIPYALQWMWPAPLALAILMAPESPWWLVRTGRIDEAKRALLRLTSLNRETDFDADETIAMIVHTTALEEKITRGATYLDCFKGFDLRRTEIVCMVWAIQNLSGNSFSNYSTYFLEQAGVSTTHAYSFAMGQYGINMIGVFGAWFLMTLGIGRRTLYLLGLSGLSSMLLIMGFLGLVPERNRDKGSLATGSMMLVWALIYQLSVGTVCYSLVSEISSRRLQIKTVVLGRILYNVAAIVCNVLTPYMLNPSAWNWGNYTGFFWGGICFCCIIYTYFRIPEPQGRSFAELDVLFEHRISARNFARTKRKRRLGITLGVMISVLCCSRAMLNGCTNLSLDGVFKVGWMKYLEELVSVGSQCEGSEMTVARDKKNLYCQV bitunicate_ascomycetes Paracoccidioides_brasiliensis_Pb03 Paracoccidioides_brasiliensis_Pb03 DS544803 2930415..2930630 Desjardins,C.A.,_Champion,M.D.,_Holder,J.W.,_Muszewska,A.,_Goldberg,J.,_Bailao,A.M.,_Brigido,M.M.,_Ferreira,M.E.,_Garcia,A.M.,_Grynberg,M.,_Gujja,S.,_Heiman,D.I.,_Henn,M.R.,_Kodira,C.D.,_Leon-Narvaez,H.,_Longo,L.V.,_Ma,L.J.,_Malavazi,I.,_Matsuo,A.L.,_Morais,F.V.,_Pereira,M.,_Rodriguez-Brito,S.,_Sakthikumar,S.,_Salem-Izacc,S.M.,_Sykes,S.M.,_Teixeira,M.M.,_Vallejo,M.C.,_Walter,M.E.,_Yandava,C.,_Young,S.,_Zeng,Q.,_Zucker,J.,_Felipe,M.S.,_Goldman,G.H.,_Haas,B.J.,_McEwen,J.G.,_Nino-Vega,G.,_Puccia,R.,_San-Blas,G.,_Soares,C.M.,_Birren,B.W._and_Cuomo,C.A. NA 0:>216 Genome_Coverage:_8.9X_(7.65X_Q>20)Annotation_was_added_to_the_scaffolds_in_March_2009. NA 03-NOV-2011 Paracoccidioides_brasiliensis_Pb03_supercont1.1_genomic_scaffold,_whole_genome_shotgun_sequence. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Paracoccidioides_brasiliensis_C0RZG1_PARBP.gb Paracoccidioides 161378321 PLoS_Genet._7_(10),_E1002345_(2011) fungi DS544803 maltose_permease_MAL61 NA Onygenales sac_fungi 22046142 216 NA genomic_DNA NA Pb03 NA Paracoccidioides_brasiliensis NA complement Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 482561 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_mitosporic_Onygenales,_Paracoccidioides Comparative_Genomic_Analysis_of_Human_Fungal_Pathogens_Causing_Paracoccidioidomycosis NA DS544803.1 CTACACTTGACAATATAGGTTCTTTTTATCTCTCGCCACGGTCATCTCGGACCCTTCGCACTGCGACCCGACGCTCACCAGCTCCTCCAGATACTTCATCCATCCCACCTTAAAGACACCATCAAGGGACAAGTTCGTGCACCCATTTAACATTGCCCGGCTACAGCACAAAACGCTTATCATCACCCCAAGCGTTATCCCCAATCGTCGTTTTCG > 792 PADG_06629 NA membrane_transporter EEH50550.1 NA MEIGTESSPGHMVADRDDKHVVESQAVTILENAPVGALPSGTVDPVYEAKAQLLNQAILDIGMGWYQWQLFVVIGFGWASDNLWPIVTSLIYTPVKNEFSPDRPPYLPLAQSLGLLVGAVFWGFSCDIYGRRWAFNLTIGITAVFGLVAAASPNFAAVAVFAALWSLGVGGNLPVDSAIFLEFLPATHQYLLTVLSIGWALAQVVANLIAWPFLGNLTCEQNAKECPRSENMGWRYFLISVGSLSMIMFFLRFACFTIFESPKYLMGRGRDQEAVHVVHQVAQRNGKTSSLTLENLEALGHGTTQGTGAGSALGRNLERFDAGHVKSLFATPKLAWSTSLMILIWAFIGLGFPLYNTFLPYIQSSRGANFGDGSTYITYRNSLIIAVLGVPGCVVGAVLVEAPRFGRKGALSLSATLTGVFLVASTTALSSNTLLGWNCAYSFMSNIMYAVLYSYTPEIFPTKDRGTGNALTAAANRIFGVMAPIIGMFADLETAVPVYISGALFIAAGVLVMLLPFESRGKASL bitunicate_ascomycetes Paracoccidioides_brasiliensis_Pb18 Paracoccidioides_brasiliensis_Pb18 DS572758 307322..308899 Desjardins,C.A.,_Champion,M.D.,_Holder,J.W.,_Muszewska,A.,_Goldberg,J.,_Bailao,A.M.,_Brigido,M.M.,_Ferreira,M.E.,_Garcia,A.M.,_Grynberg,M.,_Gujja,S.,_Heiman,D.I.,_Henn,M.R.,_Kodira,C.D.,_Leon-Narvaez,H.,_Longo,L.V.,_Ma,L.J.,_Malavazi,I.,_Matsuo,A.L.,_Morais,F.V.,_Pereira,M.,_Rodriguez-Brito,S.,_Sakthikumar,S.,_Salem-Izacc,S.M.,_Sykes,S.M.,_Teixeira,M.M.,_Vallejo,M.C.,_Walter,M.E.,_Yandava,C.,_Young,S.,_Zeng,Q.,_Zucker,J.,_Felipe,M.S.,_Goldman,G.H.,_Haas,B.J.,_McEwen,J.G.,_Nino-Vega,G.,_Puccia,R.,_San-Blas,G.,_Soares,C.M.,_Birren,B.W._and_Cuomo,C.A. NA 0:1578 Genome_Coverage:_9.8X_(8.54X_Q>20)Annotation_was_added_to_the_scaffolds_in_March_2009. NA 03-NOV-2011 Paracoccidioides_brasiliensis_Pb18_supercont1.9_genomic_scaffold,_whole_genome_shotgun_sequence. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Paracoccidioides_brasiliensis_C1GH93_PARBD.gb Paracoccidioides 170717197 PLoS_Genet._7_(10),_E1002345_(2011) fungi DS572758 membrane_transporter NA Onygenales sac_fungi 22046142 1578 NA genomic_DNA NA Pb18 NA Paracoccidioides_brasiliensis NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 502780 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_mitosporic_Onygenales,_Paracoccidioides Comparative_Genomic_Analysis_of_Human_Fungal_Pathogens_Causing_Paracoccidioidomycosis NA DS572758.1 ATGGAAATCGGGACGGAATCCAGCCCGGGGCATATGGTTGCTGATAGAGACGATAAACATGTTGTGGAATCGCAGGCCGTTACCATATTGGAAAACGCCCCCGTAGGAGCCCTCCCTTCCGGAACCGTCGATCCCGTGTACGAAGCAAAGGCCCAACTGCTGAACCAAGCGATTCTTGACATTGGAATGGGGTGGTATCAGTGGCAACTGTTTGTAGTTATTGGTTTCGGTTGGGCCAGTGATAATCTTTGGCCAATCGTCACGTCCTTGATTTACACCCCCGTGAAAAACGAGTTCTCCCCGGACCGGCCGCCTTATCTACCCCTTGCGCAAAGCCTGGGGCTGCTTGTTGGAGCTGTTTTCTGGGGGTTTAGCTGTGACATATATGGTCGACGCTGGGCGTTCAATCTTACCATCGGCATAACGGCAGTGTTTGGACTGGTGGCTGCTGCGTCGCCGAATTTCGCAGCTGTCGCAGTGTTCGCAGCGCTTTGGTCGCTTGGAGTAGGCGGGAACTTGCCTGTCGATTCTGCCATTTTTCTCGAGTTCTTGCCTGCCACTCACCAGTATCTTCTCACTGTCTTGTCTATCGGTTGGGCACTTGCTCAAGTCGTGGCCAATCTCATTGCCTGGCCCTTCCTTGGCAATCTAACCTGCGAGCAAAATGCGAAAGAATGCCCACGTTCTGAAAATATGGGATGGAGATATTTCTTGATATCGGTGGGGTCGCTCTCAATGATCATGTTCTTCCTTCGTTTTGCCTGTTTCACTATCTTCGAATCACCAAAGTATCTCATGGGGAGAGGAAGGGATCAAGAGGCCGTCCACGTAGTTCATCAGGTGGCCCAGCGGAACGGCAAAACATCGTCTCTTACTCTCGAAAACCTGGAAGCTCTCGGGCATGGCACCACTCAGGGGACAGGTGCGGGAAGTGCGTTGGGAAGAAACTTGGAGAGGTTTGACGCAGGTCACGTCAAATCGCTCTTCGCGACTCCCAAATTGGCCTGGTCAACCTCTCTGATGATACTCATCTGGGCGTTTATAGGACTTGGATTTCCCCTCTACAACACCTTCTTACCATATATCCAATCCAGCCGTGGCGCCAATTTTGGGGATGGTTCCACCTACATAACATACCGGAACTCTCTAATAATTGCCGTCCTTGGAGTCCCCGGTTGCGTCGTCGGCGCGGTGTTGGTGGAAGCACCACGGTTTGGGAGGAAAGGGGCATTATCCCTCTCGGCCACGCTCACGGGTGTATTTCTAGTTGCCTCAACCACCGCATTGTCTTCCAACACCCTCCTCGGCTGGAACTGCGCGTACAGTTTCATGAGCAACATCATGTATGCTGTTCTTTACTCCTACACCCCGGAGATATTTCCAACGAAGGATCGCGGCACTGGCAACGCACTTACAGCCGCCGCCAATAGAATATTCGGAGTCATGGCGCCCATCATTGGCATGTTTGCTGATTTGGAAACGGCGGTGCCGGTTTACATCAGTGGCGCTCTGTTCATTGCTGCCGGGGTTTTAGTTATGTTGCTACCGTTTGAATCAAGGGGGAAAGCTAGTTTGTAA > 793 PAAG_00010 NA arabinose-proton_symporter XP_002797471.1 NA MPNIFKQQLTNTPREVFNWKLGLGILCFGIMGASRGVDEGLISGTVQQKSFIAEYHLKDPNMSEEGRADRLGNITGMVQIGSIVGALLAFVVTDRIGRIQATRQLCAIWVIGIVIFMTANGRIGQVYAGRFIAGIGVGQTTVVAPTYLAEVSPRAIRGLCMCSFSGSVYLGIMLSYFASWGSSIHISDGSNTQWIVPTTLHIIFAGIIFVLSFTVHESPRYLIKAKKQEEALKTMSILRNLPIEHPYIQTEMMDIQEQLDREHEATLGSHFLAPLKELFLLPSNRYRIMIGLMSQLLSQWSGANSITIYAPEFFAMLGTTGQSEKLFATAIFGVVKLVSSLICALFLVDLLGRKRALGYGISFQFLSMLYVAIYLAVVPSIEGGFKPEGHLKRAGTAAIVCIYVSGVGWALGWNSIQYLINAEIFPLRVRALGTSMVMCFHFANQYGNSKAVPTMLLDTAMKPYGTFFFFAAVTLMGLAWMWFFLPETTGKSLEAMDDMFSLPWYIIGRKGAKLTAGSGHAEGYYSAGDTEEAPVSGKPLPQEGGKTMEAV bitunicate_ascomycetes Paracoccidioides_brasiliensis_Pb01 Paracoccidioides_brasiliensis_Pb01 XM_002797425 NA McEwen,J.G.,_Puccia,R.,_Goldman,G.H.,_Felipe,M.S.,_Ma,L.-J.J.,_Henn,M.R.,_Champion,M.,_Cuomo,C.,_Jaffe,D.,_Young,S.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Yandava,C.,_Alvarado,L.,_Kodira,C.D.,_Guigo,R.,_Borodovsky,M.,_Goldman,B.,_Klein,B.,_Mendoza,L.,_Nino-Vega,G.,_San-Blas,G.,_Sil,A.,_Soares,C.M.,_Taylor,J.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1656 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003217287).COMPLETENESS:_incomplete_on_both_ends. NA 04-MAY-2010 Paracoccidioides_brasiliensis_Pb01_arabinose-proton_symporter,_mRNA. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Paracoccidioides_brasiliensis_C1GNB5_PARBA.gb Paracoccidioides 295673850 Unpublished fungi XM_002797425 NA NA Onygenales sac_fungi NA 1656 NA mRNA NA Pb01 NA Paracoccidioides_brasiliensis NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 502779 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_mitosporic_Onygenales,_Paracoccidioides Annotation_of_Paracoccidioides_brasiliensis_Pb01 NA XM_002797425.1 ATGCCCAATATATTTAAGCAGCAGTTGACCAATACGCCTCGCGAGGTATTTAACTGGAAACTAGGTCTGGGGATTTTATGCTTCGGCATTATGGGAGCTAGTCGAGGGGTCGACGAAGGGCTTATTTCAGGGACGGTGCAGCAAAAATCGTTTATCGCTGAATATCACTTGAAAGATCCCAACATGAGTGAGGAAGGGAGGGCGGATAGATTGGGAAACATAACTGGCATGGTCCAGATCGGTAGTATTGTGGGTGCACTACTCGCATTCGTCGTGACGGACCGTATCGGACGCATCCAGGCAACGCGACAGCTCTGTGCAATTTGGGTCATTGGTATCGTGATATTCATGACAGCAAATGGTCGGATTGGGCAAGTGTACGCTGGCCGGTTCATTGCTGGCATTGGGGTTGGACAAACTACAGTGGTTGCTCCCACGTATTTAGCGGAGGTTTCCCCTCGAGCAATTCGCGGCCTTTGCATGTGCTCATTTTCCGGCTCGGTGTATCTTGGTATCATGCTGAGCTATTTTGCAAGCTGGGGTAGTTCGATCCATATTAGTGACGGCTCTAATACACAATGGATTGTGCCGACAACACTACACATCATCTTCGCTGGAATCATTTTTGTACTCTCGTTCACGGTTCATGAATCGCCTAGATATTTAATCAAGGCCAAGAAACAAGAGGAGGCTCTGAAAACCATGTCAATATTGCGCAATCTCCCAATTGAACATCCATACATTCAGACAGAGATGATGGATATCCAGGAGCAGTTAGACCGGGAACACGAAGCAACCTTGGGGTCACACTTCCTTGCACCACTTAAAGAGTTGTTTCTATTACCCTCTAACCGGTATCGTATCATGATCGGGTTGATGTCGCAGCTGCTCAGTCAATGGTCGGGAGCAAACAGCATAACCATCTACGCGCCCGAATTTTTTGCCATGTTGGGGACGACAGGTCAATCGGAGAAACTTTTTGCCACGGCAATTTTTGGTGTCGTGAAACTGGTGTCTTCTCTTATCTGTGCTCTCTTTCTGGTTGACTTATTGGGACGCAAAAGGGCTCTTGGATATGGAATATCATTCCAATTTCTGAGCATGCTATACGTGGCAATTTACCTAGCAGTCGTTCCATCGATAGAAGGCGGGTTCAAGCCGGAAGGGCATTTAAAGCGCGCTGGCACAGCAGCAATTGTGTGCATATATGTATCTGGAGTGGGCTGGGCTCTTGGCTGGAATAGCATCCAGTATCTCATCAACGCGGAAATATTCCCGCTTCGAGTGCGAGCCCTGGGTACATCGATGGTGATGTGCTTTCACTTCGCAAATCAATATGGTAATTCGAAAGCTGTCCCGACCATGCTGCTTGACACAGCCATGAAGCCTTACGGGACTTTTTTCTTCTTTGCAGCAGTTACACTTATGGGTTTAGCATGGATGTGGTTCTTCCTGCCAGAAACCACCGGCAAGTCGCTGGAGGCGATGGACGATATGTTCAGCTTGCCATGGTATATAATTGGTCGAAAAGGAGCGAAATTGACTGCGGGAAGTGGACACGCCGAGGGGTATTATAGTGCAGGAGATACGGAAGAGGCCCCTGTCTCAGGGAAACCACTTCCACAAGAGGGAGGAAAAACTATGGAAGCAGTTTAG > 794 PAAG_01453 NA high-affinity_glucose_transporter XP_002796445.1 NA MHEVSNIYIITAIAVVGGALFGFDISSMSAMCVTTVHIQDISYLSPPLTFCNNSISTQHYLCYFNQGPNFFGEITPTNPKGLCSGPRPAIQGGITAAMPGGSWVGALISGYLTDLLGRKKSIQVGTMFWIIGSAISSGAQNIGMLIGGRFINGLAVGICSAQVPVYISELAPPSRRGRLVGTQQWAITWECDHPKKKKKKKKKGILIMFYLSYGCTFIGPENGTAAFRVPWALQMIPGIFLFLALFFMPESPRWLAKKGRWDQTQGIITAIHGKGDTTNPFVRAELEEIEYFVNLEKTNDTTYSDLFKPDMIFRTHVGVFTQIWSQLTGMNVMMYYITYVFAMAGMKGNTLLVSSSIQFIINVVMTVPALIWVDKWGRRPTLIAGGLLMCTWMFATGGIMGANGHIVPGGIDGVKAVSWAVNPGPAAKAVVACTYLFVASFAPTWGPVSWIYPPELFPLRFRGKAVALCTSANWIFNFALSYFVPPAFENIQWRAYMIFGVFCAAMTIHVFLAFPETAGKSLEAVEEIFTNRIPAWKTRVTTNVTIAAEQGDVEATGTFSEHTKMHTREEIRQINATTTTTTNGNTTSATSSPKSKEHATTTV bitunicate_ascomycetes Paracoccidioides_brasiliensis_Pb01 Paracoccidioides_brasiliensis_Pb01 XM_002796399 1..1812 McEwen,J.G.,_Puccia,R.,_Goldman,G.H.,_Felipe,M.S.,_Ma,L.-J.J.,_Henn,M.R.,_Champion,M.,_Cuomo,C.,_Jaffe,D.,_Young,S.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Yandava,C.,_Alvarado,L.,_Kodira,C.D.,_Guigo,R.,_Borodovsky,M.,_Goldman,B.,_Klein,B.,_Mendoza,L.,_Nino-Vega,G.,_San-Blas,G.,_Sil,A.,_Soares,C.M.,_Taylor,J.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1812 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003217285).COMPLETENESS:_incomplete_on_the_5_end. NA 04-MAY-2010 Paracoccidioides_brasiliensis_Pb01_high-affinity_glucose_transporter,_mRNA. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Paracoccidioides_brasiliensis_C1GSF8_PARBA.gb Paracoccidioides 295671796 Unpublished fungi XM_002796399 NA NA Onygenales sac_fungi NA 1812 NA mRNA NA Pb01 NA Paracoccidioides_brasiliensis NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 502779 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_mitosporic_Onygenales,_Paracoccidioides Annotation_of_Paracoccidioides_brasiliensis_Pb01 NA XM_002796399.1 ATGCATGAGGTATCTAACATTTACATCATCACAGCTATCGCTGTGGTTGGTGGTGCTCTCTTCGGTTTCGATATCAGTTCGATGTCTGCGATGTGCGTTACTACTGTTCACATCCAAGATATTTCCTATTTATCTCCTCCGCTGACTTTCTGCAACAATAGTATCTCCACCCAACACTACCTTTGCTACTTCAACCAAGGCCCCAACTTCTTTGGGGAAATTACTCCAACTAACCCGAAGGGTCTCTGCAGTGGCCCTAGGCCTGCTATTCAAGGCGGAATCACCGCGGCTATGCCCGGTGGTTCCTGGGTTGGAGCTCTCATTTCCGGTTATCTAACTGATCTTCTCGGTCGCAAAAAATCCATCCAAGTCGGCACTATGTTTTGGATTATTGGAAGTGCCATCTCTAGTGGTGCTCAGAACATCGGTATGCTTATTGGCGGACGCTTTATCAACGGTTTGGCGGTTGGTATCTGCTCCGCCCAGGTTCCTGTCTACATCTCAGAGTTGGCCCCTCCTTCGCGCAGAGGTCGACTAGTTGGAACACAACAGTGGGCCATTACGTGGGAATGTGATCACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTATTCTGATTATGTTCTACTTGTCTTACGGATGTACATTCATCGGACCCGAGAACGGCACAGCTGCCTTCAGAGTTCCGTGGGCTCTGCAGATGATTCCCGGCATCTTCCTCTTCCTTGCGCTGTTCTTTATGCCGGAATCCCCTCGCTGGCTGGCTAAGAAAGGTCGCTGGGATCAAACTCAAGGGATCATCACCGCCATCCATGGCAAGGGCGACACTACCAATCCCTTCGTCAGGGCTGAACTGGAAGAAATTGAATATTTCGTCAATCTGGAGAAGACTAATGATACCACGTACTCTGACCTTTTCAAGCCAGATATGATCTTCCGAACCCACGTCGGTGTCTTTACACAGATCTGGAGTCAGCTGACAGGAATGAATGTCATGATGTATTATATCACCTATGTGTTCGCTATGGCCGGAATGAAAGGCAACACCTTACTTGTGTCATCCTCGATTCAATTCATCATAAATGTCGTCATGACCGTCCCCGCACTCATCTGGGTCGACAAATGGGGTCGCCGCCCTACCCTCATAGCCGGTGGACTCCTCATGTGTACTTGGATGTTCGCCACAGGTGGGATTATGGGCGCGAACGGCCACATCGTACCCGGGGGCATCGATGGAGTCAAAGCTGTGTCGTGGGCCGTCAACCCAGGCCCCGCAGCAAAAGCTGTCGTGGCATGCACATATCTCTTCGTCGCCTCCTTTGCGCCCACATGGGGCCCCGTCTCCTGGATCTACCCGCCCGAACTCTTCCCACTCCGCTTCCGCGGCAAGGCTGTGGCGCTGTGCACATCCGCCAACTGGATCTTCAACTTCGCTCTCTCTTACTTTGTCCCACCAGCTTTTGAGAACATTCAATGGAGGGCATACATGATCTTTGGCGTTTTCTGCGCCGCAATGACCATCCACGTCTTCCTCGCCTTCCCCGAAACAGCGGGTAAATCTCTCGAAGCCGTCGAAGAGATCTTCACGAACCGCATACCAGCATGGAAGACACGTGTCACAACCAACGTTACCATCGCAGCCGAGCAAGGAGATGTTGAGGCTACGGGCACCTTTTCTGAGCATACCAAGATGCACACGCGAGAGGAGATACGACAGATCAACGCTACGACCACGACCACGACCAACGGCAACACTACCTCTGCGACATCGTCACCCAAATCCAAGGAGCATGCCACTACCACTGTCTAA > 795 PAAG_07009 NA sugar_transporter_STL1 XP_002791098.1 NA MGGRYCGLRGTRLNVAIGVIAGLDFLGVMGGLLTLPSFASTFPEIDLTEKTKKTLTSAEVNHRSNIQGISVASYNVGCFFGAIACIWIGDILGRRKTIFIGSVIMVVGAVLQASAFGLAHFVIGRVITGLGNGLNTSTVPTWQSECSKSHRRGQLVMVEGALITGGICLSYWLDFGFSFLEPSSVSWRFPVAFQIVLAVFILAAVMLLPESPRWLILKGKEDEALNVLGALSDLAADDPYINREFIAIKDTVLEMQQGGFADLFTMTEDRHFHRVLLAYVNQMFQQISGINLITYYAAVIYETSIGLSGFMSRILAACNGTEYFIASWIPVFIVEKVGRRPLMLVGAVGMSLSMVVLAVVTSFERQTKPGIVAAVFLFVFNTFFAIGWLGMTWLYPAEIVPLRIRAPANALSTSANWAFNFMVVMVTPVAFTSIKYKTYIIFAVINAFIVPVVYIFYPETAYRSLEEMDTIFRKTDSIFNAVRVAAETPCRYGKNGEVLINYDETEEHQRKSSAVGFENYTAENKHHANPDHKVEAGNSSAHSSS bitunicate_ascomycetes Paracoccidioides_brasiliensis_Pb01 Paracoccidioides_brasiliensis_Pb01 XM_002791052 NA McEwen,J.G.,_Puccia,R.,_Goldman,G.H.,_Felipe,M.S.,_Ma,L.-J.J.,_Henn,M.R.,_Champion,M.,_Cuomo,C.,_Jaffe,D.,_Young,S.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Yandava,C.,_Alvarado,L.,_Kodira,C.D.,_Guigo,R.,_Borodovsky,M.,_Goldman,B.,_Klein,B.,_Mendoza,L.,_Nino-Vega,G.,_San-Blas,G.,_Sil,A.,_Soares,C.M.,_Taylor,J.,_Lander,E.,_Nusbaum,C.,_Galagan,J._and_Birren,B. NA 0:1638 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003217267).COMPLETENESS:_incomplete_on_both_ends. NA 04-MAY-2010 Paracoccidioides_brasiliensis_Pb01_sugar_transporter_STL1,_mRNA. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Paracoccidioides_brasiliensis_C1H832_PARBA.gb Paracoccidioides 295661084 Unpublished fungi XM_002791052 NA NA Onygenales sac_fungi NA 1638 NA mRNA NA Pb01 NA Paracoccidioides_brasiliensis NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 502779 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_mitosporic_Onygenales,_Paracoccidioides Annotation_of_Paracoccidioides_brasiliensis_Pb01 NA XM_002791052.1 ATGGGTGGGCGCTACTGCGGCCTCCGAGGCACACGCCTCAACGTCGCAATTGGCGTTATTGCTGGTCTTGATTTTCTAGGTGTTATGGGAGGTCTTTTGACGCTTCCCTCCTTCGCATCAACGTTCCCTGAAATCGACCTCACGGAGAAGACCAAAAAGACTTTAACTTCTGCTGAGGTGAACCACAGATCTAATATCCAAGGTATTTCGGTTGCGTCCTACAATGTTGGCTGCTTTTTTGGTGCCATTGCCTGTATCTGGATCGGCGACATCCTTGGGCGCCGGAAAACTATCTTTATCGGATCTGTGATCATGGTGGTTGGGGCTGTTCTGCAAGCCTCTGCATTCGGTCTTGCGCATTTCGTTATAGGCAGGGTTATCACGGGTCTAGGGAATGGCTTGAACACCTCTACCGTCCCAACCTGGCAATCCGAATGTTCAAAATCTCACCGCCGCGGCCAACTGGTCATGGTCGAAGGGGCTCTGATCACGGGTGGCATTTGCCTCAGCTACTGGTTAGATTTCGGTTTCTCATTCCTCGAGCCTAGCAGCGTCTCCTGGAGATTCCCGGTCGCCTTCCAGATTGTTTTGGCCGTGTTCATTCTTGCCGCCGTGATGTTATTACCCGAATCTCCCCGGTGGCTTATCCTGAAGGGCAAAGAAGACGAAGCACTGAACGTCCTAGGAGCACTGAGCGATTTGGCAGCTGATGACCCTTATATCAACAGGGAATTTATTGCCATCAAGGATACTGTCCTTGAAATGCAACAGGGAGGTTTTGCTGATCTTTTCACGATGACTGAAGATCGTCACTTCCACCGTGTTCTCCTGGCGTACGTCAACCAGATGTTTCAGCAGATCTCCGGTATCAATCTCATCACTTATTATGCTGCTGTGATTTACGAGACCAGTATTGGTCTCAGTGGCTTCATGTCGCGAATTCTCGCCGCTTGTAATGGCACCGAATATTTCATAGCATCTTGGATCCCTGTCTTTATCGTGGAGAAGGTTGGTCGACGTCCGCTTATGCTTGTCGGTGCTGTTGGCATGTCACTTTCCATGGTTGTTTTGGCTGTTGTCACCAGCTTTGAGCGTCAAACCAAGCCTGGTATTGTGGCGGCCGTCTTCCTGTTCGTCTTTAATACATTCTTCGCTATCGGTTGGTTAGGCATGACTTGGCTATATCCGGCAGAAATTGTCCCTCTTCGTATCCGGGCGCCTGCAAACGCTCTATCAACCTCAGCAAACTGGGCATTCAATTTCATGGTGGTCATGGTTACCCCTGTGGCCTTCACCTCCATCAAATATAAGACCTACATTATTTTCGCTGTTATCAACGCCTTCATCGTACCTGTTGTCTATATCTTCTACCCCGAAACCGCGTATCGTTCTCTCGAAGAAATGGACACTATATTCCGCAAGACCGACTCGATATTCAACGCCGTGAGAGTTGCAGCAGAGACTCCGTGTCGCTACGGAAAGAATGGTGAAGTCCTGATCAACTACGACGAAACCGAAGAGCACCAACGCAAATCTAGCGCTGTAGGTTTCGAAAATTATACGGCAGAAAATAAACACCATGCGAACCCAGATCACAAAGTTGAAGCCGGCAATTCGAGCGCTCATAGCTCTTCCTAG > 796 Pden_1181 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_ppu:PP_3165_benzoate_MFS_transporter_BenK major_facilitator_transporter YP_914982.1 11 MRSIDVNEAIDQGRFGGFQWMVVALCGTLLIVDGYDVFVAGTVLPTLIAEWGLTKPQAGALQAWALFGMMFGALILGPLADRIGRKKGVAISFVLFTTATLLTGFANSPEQFKVFRFVAGLGCGGLMPNAVALMNEYAPRRLRGTMVALMFSGYSVGGMIAAGLGIGLIPGFGWKPMFFIAAVPLLLLPLVLWKLPESLGFLIRQGRQDEARRIFARISPSTVLAADDRLVFSETKGASASVAELFRHNRTLRTLMLWVSFFCCLLLVYLLSSWLPKVLQEAGYAERASLLSLFSLNFGGMAGAIAGGWMGDRFGLPKVVVAFFAAAAASIALIGLNPASGVLFLLVFVAGATTIGTQILLYASVAQLYNLSVRSTGLGWASGVGRIGAIVGPTLGGVLLARELPLGQNFLIFAIPAAVSALAMLVFALSNARTRDATQLAAA alpha_subgroup Paracoccus_denitrificans_PD1222 Paracoccus_denitrificans_PD1222 NC_008686 1152170..1153501 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Munk,A.C.,_Brettin,T.,_Bruce,D.,_Han,C.,_Tapia,R.,_Gilna,P.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Spiro,S.,_Richardson,D.J.,_Moir,J.W.B.,_Ferguson,S.J.,_van_Spanning,R.J.M._and_Richardson,P. NA 0:1332 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000489.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3634481Source_DNA_and_bacteria_available_from_Stephen_Spiro(stephen.spiro@utdallas.edu)Contacts:_Stephen_Spiro_(stephen.spiro@utdallas.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.There_is_an_unverified_repetitive_structure_in_the_vicinity_ofcomplement(2413304-2418104)The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 24-JAN-2012 Paracoccus_denitrificans_PD1222_chromosome_1,_complete_sequence. NA alpha-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Paracoccus_denitrificans_A1B192_PARDP.gb Paracoccus_Davis_1969_(Approved_Lists_1980)_emend._Ludwig_et_al._1993 119382757 Unpublished NA NC_008686 NA NA Rhodobacterales purple_photosynthetic_bacteria_and_relatives NA 1332 1 genomic_DNA NA PD1222 NA Paracoccus_dentrificans NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 318586 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodobacterales,_Rhodobacteraceae,_Paracoccus Complete_sequence_of_Chromosome_1_of_Paracoccus_denitrificans_PD1222 NA NC_008686.1 ATGCGAAGCATTGATGTGAACGAGGCGATAGACCAGGGCCGCTTCGGCGGCTTCCAATGGATGGTCGTCGCGCTTTGCGGCACGCTGCTGATCGTCGACGGATACGACGTGTTCGTGGCCGGCACTGTGCTGCCCACGCTGATCGCGGAATGGGGCCTTACCAAGCCGCAGGCCGGCGCGCTTCAGGCCTGGGCGCTGTTCGGGATGATGTTCGGGGCGCTGATCCTGGGCCCGCTGGCCGACAGGATCGGCCGCAAGAAGGGCGTCGCCATCAGCTTCGTGCTGTTCACCACGGCGACCCTGCTGACGGGCTTTGCCAATTCGCCCGAGCAGTTCAAGGTCTTCCGCTTCGTCGCAGGTCTGGGTTGCGGCGGGCTGATGCCCAATGCCGTCGCGCTGATGAACGAATACGCGCCCAGGCGCCTGCGTGGCACGATGGTCGCGCTGATGTTCTCGGGCTATTCGGTCGGCGGCATGATCGCGGCGGGGCTGGGGATCGGGCTCATCCCCGGCTTCGGCTGGAAGCCGATGTTCTTCATCGCTGCCGTGCCGCTGCTGCTTTTGCCGTTGGTGCTGTGGAAGCTGCCGGAATCGCTGGGCTTTCTGATCCGGCAGGGCCGGCAGGACGAAGCGAGGCGCATCTTTGCCAGGATCAGCCCCTCGACGGTGCTGGCGGCCGATGACAGGCTGGTGTTCAGCGAAACCAAGGGTGCCTCGGCCTCGGTCGCCGAACTGTTCCGCCACAATCGCACCCTGCGCACGCTGATGCTGTGGGTGTCGTTCTTCTGCTGCCTGCTGCTGGTCTATCTGCTGTCCTCCTGGCTGCCCAAGGTGCTGCAAGAGGCCGGATATGCCGAACGGGCCAGCCTTCTCAGCCTCTTTTCGCTGAACTTCGGCGGCATGGCGGGCGCCATCGCCGGAGGATGGATGGGCGACCGCTTCGGCCTGCCGAAGGTCGTGGTCGCCTTCTTTGCGGCGGCGGCGGCATCCATTGCGCTGATCGGCCTCAACCCGGCGTCGGGCGTGCTGTTCCTGCTGGTCTTTGTCGCCGGGGCCACGACCATCGGCACGCAGATCCTGCTGTATGCAAGCGTGGCGCAGCTTTACAACCTGTCGGTCCGCTCGACCGGACTGGGCTGGGCCTCGGGCGTCGGCCGGATCGGTGCGATCGTCGGGCCGACGCTTGGCGGGGTGCTGCTGGCGCGGGAACTGCCGCTGGGGCAGAACTTCCTGATCTTCGCGATCCCGGCGGCGGTCTCGGCCCTGGCGATGCTGGTCTTTGCGCTCAGCAACGCGCGCACCCGCGACGCGACGCAGCTTGCCGCCGCCTGA > 797 Pden_3518 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bur:Bcep18194_B3017_major_facilitator_superfamily_(MFS_1)_transporter major_facilitator_transporter YP_917284.1 11 METTRQDWRSVPAKRSSPGRAVAAASIGNALEWYDFTVYALFAIYIAQNFFPGGDDTVELVKAFLAFGLGFVIRPLGAVVIGVYGDKAGRKAALFLTIMIMAAGTLLIAIAPTYAAMGIGAPLMILAGRVLQGFSAGGEIGGAAAFLVEHAPADKKGKYASWLQASMAISNIMGALVAFAVTSLLTEQQVGDWGWRIPFFIGVLIAPVGLWLRKTLDETPAFQAERASAGREPAAAPLRQVFSDYLGHLIKGFAFSILWAVCVYVLIIYMPIFVQRAFGFTPSQAFTASLIGNVFLAVGCVCAGTVSDRIGRRLMLGASAALMLVAVYPLISWLQASPTLTTLVIVQSLFCIMVSGFVGVAPATLSEVFPTHVRTTGMSLAYNAAVTIFGGFAPATLTWLGSTGIGFHAPAFYVMAAAAASLIAVLVLPKPYSTNCGRGAVPAPADP alpha_subgroup Paracoccus_denitrificans_PD1222 Paracoccus_denitrificans_PD1222 NC_008687 664452..665795 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Munk,A.C.,_Brettin,T.,_Bruce,D.,_Han,C.,_Tapia,R.,_Gilna,P.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Spiro,S.,_Richardson,D.J.,_Moir,J.W.B.,_Ferguson,S.J.,_van_Spanning,R.J.M._and_Richardson,P. NA 0:1344 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000490.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3634481Source_DNA_and_bacteria_available_from_Stephen_Spiro(stephen.spiro@utdallas.edu)Contacts:_Stephen_Spiro_(stephen.spiro@utdallas.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 24-JAN-2012 Paracoccus_denitrificans_PD1222_chromosome_chromosome_2,_complete_sequence. NA alpha-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Paracoccus_denitrificans_A1B7U4_PARDP.gb Paracoccus_Davis_1969_(Approved_Lists_1980)_emend._Ludwig_et_al._1993 119385557 Unpublished NA NC_008687 NA NA Rhodobacterales purple_photosynthetic_bacteria_and_relatives NA 1344 2 genomic_DNA NA PD1222 NA Paracoccus_dentrificans NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 318586 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodobacterales,_Rhodobacteraceae,_Paracoccus Complete_sequence_of_Chromosome_2_of_Paracoccus_denitrificans_PD1222 NA NC_008687.1 ATGGAAACCACACGGCAGGACTGGCGGAGCGTGCCCGCCAAACGATCATCGCCGGGGCGCGCGGTCGCCGCGGCCTCGATCGGCAACGCGCTCGAATGGTACGACTTCACCGTCTATGCACTGTTCGCGATCTATATCGCGCAGAACTTCTTTCCGGGCGGCGACGATACCGTCGAACTGGTCAAGGCCTTCCTGGCCTTCGGTCTCGGCTTCGTGATCCGCCCGCTGGGGGCCGTCGTGATCGGGGTCTATGGCGACAAGGCCGGCCGCAAGGCGGCGCTGTTTCTGACGATCATGATCATGGCGGCGGGGACGCTGCTCATCGCAATTGCGCCGACCTATGCCGCGATGGGCATCGGCGCGCCGCTGATGATCCTTGCCGGCCGCGTTCTGCAGGGCTTTTCGGCGGGTGGCGAGATCGGCGGCGCGGCGGCATTTCTGGTCGAGCATGCGCCGGCCGACAAGAAGGGCAAATACGCCTCGTGGTTGCAGGCGAGCATGGCGATCTCGAACATCATGGGCGCGCTTGTGGCCTTCGCCGTCACATCGCTCCTGACCGAGCAGCAGGTCGGGGACTGGGGCTGGCGCATACCCTTCTTCATCGGTGTCCTGATCGCGCCGGTCGGCCTGTGGCTGCGCAAGACGCTGGACGAAACCCCGGCCTTCCAGGCCGAGCGGGCCAGCGCCGGGCGCGAACCCGCCGCCGCGCCGCTCAGGCAGGTCTTCTCGGACTATCTCGGCCACCTGATCAAGGGCTTCGCCTTTTCGATCCTGTGGGCGGTCTGCGTCTACGTGCTGATCATCTACATGCCGATCTTCGTCCAGAGGGCCTTCGGCTTCACCCCCTCGCAGGCCTTCACCGCCTCGCTGATCGGCAACGTCTTCCTGGCCGTGGGCTGTGTCTGCGCCGGCACCGTCTCGGACAGGATCGGGCGTCGCCTGATGCTGGGAGCCTCGGCGGCGCTGATGCTGGTCGCGGTCTATCCGTTGATCTCGTGGCTTCAGGCATCGCCGACGCTGACCACCCTCGTCATCGTGCAAAGCCTCTTTTGCATCATGGTCTCGGGCTTCGTGGGCGTGGCGCCCGCCACCCTTTCCGAAGTCTTTCCGACCCATGTCCGCACCACCGGCATGTCGCTGGCCTACAATGCCGCCGTGACGATCTTCGGCGGGTTCGCCCCCGCGACGCTGACATGGCTGGGCAGCACGGGGATCGGTTTCCATGCGCCCGCATTCTACGTCATGGCGGCCGCCGCCGCGTCGCTGATCGCGGTGCTGGTGCTGCCAAAGCCCTATTCGACGAATTGCGGGCGCGGGGCCGTTCCGGCCCCCGCCGATCCTTGA > 798 HMPREF9024_00370 NA MFS_transporter,_DHA1_family,_multidrug_resistance_protein EFA27553.1 11 MFSHREGRARKKREPWQQNLFVLWFGTFIAGIAFSEIMPFLSLYVNTLGNFSKSQLSLYSGLTYSSTFLVLAIISPIWGKIADKRGRKLMILRASLGMAFVLGAMGLVQNVYQLIGLRLLQGVFAGYISNANALIATETPKEKSGYALGFLSTGPVSGSLLGPLVGGALASIFSYRITFFITGALLLIVFFLSLFLVHEHFVPIESTEGSLTAKDVVHKLNRPQAVFGMFITTMIIQASNNSIAPIISLYVKELMHNGAGVTMVAGLIAAIPGIANMLAAPRLGELGDRIGTEKILSVAFLFAMVLYVPMAFVPSVFWLGVFRFFIGISDGAMLPAVQSILSKRTPPEVTGRIFSWNQSFQALGNMIGPLLGSAVSGLFDYNAVFIATSVLVLINFLLFRWLNGRSVA Bacillus/Lactobacillus/Streptococcus_group Pediococcus_acidilactici_7_4 Pediococcus_acidilactici_7_4 GG730083 430065..431291 Ward,D.,_Earl,A.,_Feldgarden,M.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.,_Bochicchio,J.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Allen-Vercoe,E.,_Strauss,J.,_Ambrose,C.,_McDonald,J.,_Haas,B.,_Nusbaum,C._and_Birren,B. NA 0:1227 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Source_DNA_provided_by_McDonald,_J.,_Strauss,_J.C.,_Ambrose,_C.E.and_Allen-Vercoe,_E._(Molecular_and_Cellular_Biology,_University_ofGuelph,_Guelph,_Ontario,_N1G_2W1,_Canada).Bacteria_provided_by_Strauss,_J.C.,_Ambrose,_C.E._and_Allen-Vercoe,E._(Molecular_and_Cellular_Biology,_University_of_Guelph,_Guelph,Ontario,_N1G_2W1,_Canada).Genome_Coverage:_22.08xSequencing_Technology:_454. NA 04-DEC-2009 Pediococcus_acidilactici_7_4_genomic_scaffold_supercont1.1,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pediococcus_acidilactici_D2EHV8_PEDAC.gb Pediococcus_Claussen_1903 270281351 Unpublished NA GG730083 NA NA Lactobacillales low_GC_Gram+ NA 1227 NA genomic_DNA NA 7_4 NA Pediococcus_lindneri NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 563194 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Pediococcus The_Genome_Sequence_of_Pediococcus_acidilactici_strain_7_4 NA GG730083.1 TTAAGCAACGGACCGGCCGTTTAACCAACGGAAGAGGAGAAAGTTGATTAATACCAATACGGAAGTGGCAATGAAAACCGCGTTGTAATCAAACAATCCCGAAACTGCCGAACCTAATAACGGACCAATCATGTTGCCTAACGCCTGAAAAGATTGGTTCCAACTGAAAATTCGTCCGGTGACTTCCGGAGGGGTTCGCTTAGATAAAATACTTTGCACCGCTGGTAACATGGCACCATCCGAGATGCCGATAAAGAAACGGAAAACGCCTAACCAGAATACTGAAGGCACGAACGCCATCGGTACGTAAAGGACCATTGCAAATAGGAAGGCGACCGATAAAATTTTCTCGGTTCCAATGCGATCGCCGAGTTCACCCAGCCGGGGAGCGGCAAGCATATTGGCAATCCCGGGGATGGCGGCGATTAAACCGGCAACCATGGTAACTCCGGCACCGTTATGCATCAGCTCCTTAACGTACAAACTAATAATTGGGGCGATGGAATTATTCGAAGCTTGAATAATCATGGTGGTGATAAACATCCCAAAGACTGCTTGCGGCCGGTTCAACTTATGTACCACGTCTTTAGCAGTTAACGAACCTTCCGTGCTTTCGATTGGAACAAAGTGTTCGTGAACTAAGAATAAACTAAGGAAGAACACGATTAATAATAGTGCTCCAGTGATGAAAAAGGTGATACGATAAGAGAAGATGGAAGCTAGGGCTCCACCGACGAGGGGACCTAAAAGGGAGCCGGATACGGGACCAGTTGATAGGAAACCGAGGGCGTACCCGCTTTTTTCTTTCGGAGTTTCCGTAGCAATTAAGGCGTTTGCGTTACTAATGTAACCAGCAAAGACCCCTTGTAATAAACGGAGGCCGATTAGTTGGTAGACATTTTGGACTAATCCCATCGCGCCTAAAACAAACGCCATTCCGAGGGAAGCTCGTAAGATCATCAGCTTACGCCCTCGTTTATCAGCAATCTTTCCCCAGATTGGTGAAATGATGGCTAGCACTAAAAAGGTTGAGGAATAAGTTAGTCCACTGTATAGTGATAATTGAGATTTCGAGAAATTGCCGAGTGTATTGACATAAAGGGACAAAAAAGGCATAATCTCACTAAATGCGATACCGGCAATAAACGTTCCGAACCATAGTACAAAGAGGTTTTGCTGCCATGGTTCGCGTTTTTTTCTAGCTCGTCCTTCTCGATGAGAAAACAT > 799 HMPREF0623_1208 COG:_COG0477;_Pfam:_PF00083;_InterPro:_IPR003663 MFS_family_major_facilitator_transporter,_D-xylose:cation_symporter EFL95471.1 11 MKKVSASFIYFFGALGGLLFGYDTGVISGAILFIEKQMHLDAWQQGWVVSAVLLGAMLGSVIIGPSSDRFGRKKLLLLSAIIFFLGSIGSAFAAGFWTLILSRIILGMAVGAASALIPTYLAELAPAEKRGTVSSLFQLMVMTGILIAYITNYTFSGMYTGWRWMLGFAAIPSALLFLGGLVLPESPRFLVKTGDTKEAKHVLGQMNNHNQAVVDKELVQIQEQATLEKGGLKELFSQFVRPALIIAIGLTIFQQVMGCNTVLYYAPTIFTDAGFGVNAALIAHIGIGIFNVIVTAVAVAIMDKIDRRKMLFWGGFFMGISLLVMSYGLKYSHSSFTAAVIAVVAMTVYIAVFSATWGPVMWVMIGEIFPLNIRGLGNSFGSFVNWTANAVVSLTFPSLLNMFGKGSLFIGYAALCFLAMWFVYAKVFETRNRSLEDIEAELRKNDKRVED Bacillus/Lactobacillus/Streptococcus_group Pediococcus_acidilactici_DSM_20284 Pediococcus_acidilactici_DSM_20284 AEEG01000004 235403..236758 Muzny,D.,_Qin,X.,_Deng,J.,_Jiang,H.,_Liu,Y.,_Qu,J.,_Song,X.-Z.,_Zhang,L.,_Thornton,R.,_Coyle,M.,_Francisco,L.,_Jackson,L.,_Javaid,M.,_Korchina,V.,_Kovar,C.,_Mata,R.,_Mathew,T.,_Ngo,R.,_Nguyen,L.,_Nguyen,N.,_Okwuonu,G.,_Ongeri,F.,_Pham,C.,_Simmons,D.,_Wilczek-Boney,K.,_Hale,W.,_Jakkamsetti,A.,_Pham,P.,_Ruth,R.,_San_Lucas,F.,_Warren,J.,_Zhang,J.,_Zhao,Z.,_Zhou,C.,_Zhu,D.,_Lee,S.,_Bess,C.,_Blankenburg,K.,_Forbes,L.,_Fu,Q.,_Gubbala,S.,_Hirani,K.,_Jayaseelan,J.C.,_Lara,F.,_Munidasa,M.,_Palculict,T.,_Patil,S.,_Pu,L.-L.,_Saada,N.,_Tang,L.,_Weissenberger,G.,_Zhu,Y.,_Hemphill,L.,_Shang,Y.,_Youmans,B.,_Ayvaz,T.,_Ross,M.,_Santibanez,J.,_Aqrawi,P.,_Gross,S.,_Joshi,V.,_Fowler,G.,_Nazareth,L.,_Reid,J.,_Worley,K.,_Petrosino,J.,_Highlander,S._and_Gibbs,R. NA 0:1356 Pediococcus_acidilactici_DSM_20284_Strain_source,_body_site:_Gastrointestinal_tract_Inquiries_should_be_directed_to_microbe@hgsc.bcm.tmc.edu_This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_DSMZ._The_genomic_DNA_wasprepared_from_a_single_bacterial_isolate._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data_and_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data._The_Roche/454_Lifesciences_sequencewas_assembled_using_the_Roche/454_Lifesciences_Newbler_assembler.The_contigs_from_the_Newbler_assembly_were_aligned_with_mappingtools_such_as_Mosaic_and_Crossmatch_and_these_data_were_used_forerror_correction_for_this_version_of_the_draft_assembly._This_draftassembly_meets_the_HMP_draft_quality_standards_(more_than_90%_ofthe_genome_is_included_in_contigs,_more_than_90%_of_a_core_set_ofbacterial_genes_are_found_with_>_30%_identity_and_>_30%_length;more_than_90%_of_the_bases_in_the_assembly_have_more_than_5_foldsequence_coverage,_the_contig_N50_length_is_greater_than_5kb,_thescaffold_N50_length_is_greater_than_20kb,_and_there_is_less_than_1gap_per_5kb).##Genome-Assembly-Data-START##Finishing_Goal_::_Standard_DraftCurrent_Finishing_Status_::_Standard_DraftAssembly_Method_::_Newbler_Assembler_v._2.3-10192009Genome_Coverage_::_130xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 20-AUG-2010 Pediococcus_acidilactici_DSM_20284_contig00004,_whole_genome_shotgun_sequence. NA Lactobacillaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pediococcus_acidilactici_E0NH11_PEDAC.gb Pediococcus_Claussen_1903 304328026 Submitted_(27-JUL-2010)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA AEEG01000004 NA NA Lactobacillales low_GC_Gram+ NA 1356 NA genomic_DNA NA DSM_20284 NA Pediococcus_lindneri NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 862514 Bacteria,_Firmicutes,_Lactobacillales,_Lactobacillaceae,_Pediococcus Direct_Submission NA AEEG01000004.1 ATGAAAAAAGTATCCGCAAGTTTCATATATTTCTTCGGTGCTTTAGGTGGTTTACTGTTTGGTTATGATACCGGGGTAATCTCCGGCGCCATACTATTCATTGAAAAACAAATGCACTTGGACGCCTGGCAACAAGGCTGGGTCGTTAGTGCCGTCCTCCTAGGCGCCATGTTAGGTTCGGTAATTATTGGGCCCTCTTCAGACCGCTTTGGTCGTAAGAAGTTACTACTATTGTCTGCAATTATTTTCTTCTTAGGTTCAATCGGCTCAGCTTTTGCTGCTGGGTTCTGGACGTTAATTTTATCGCGAATCATTTTAGGGATGGCCGTTGGGGCAGCTTCCGCATTAATTCCAACCTACTTAGCGGAATTAGCGCCAGCAGAAAAACGGGGAACTGTCTCCAGCCTCTTCCAATTAATGGTAATGACCGGAATTTTGATCGCCTACATTACCAACTACACATTCTCTGGGATGTACACTGGTTGGCGCTGGATGCTTGGTTTTGCCGCCATCCCTTCCGCATTGCTCTTCCTTGGAGGATTAGTTTTACCAGAAAGTCCCCGTTTCTTAGTTAAAACGGGTGATACCAAAGAAGCTAAGCATGTTTTAGGACAGATGAATAACCATAATCAAGCGGTCGTTGATAAAGAACTCGTCCAAATTCAAGAACAGGCTACACTTGAAAAGGGTGGGTTAAAAGAATTATTTAGTCAGTTCGTTCGACCAGCGTTAATCATTGCGATTGGCTTAACCATTTTCCAACAGGTAATGGGATGCAATACCGTACTTTACTACGCACCAACCATTTTCACTGACGCTGGATTTGGGGTTAATGCTGCGTTGATTGCACATATTGGAATTGGAATCTTTAACGTAATCGTTACCGCCGTGGCAGTAGCAATTATGGATAAAATTGATCGCCGAAAGATGCTTTTCTGGGGTGGTTTCTTTATGGGGATTTCGTTGCTAGTAATGAGTTACGGACTTAAATACTCCCACAGCTCGTTTACTGCAGCGGTAATTGCCGTAGTCGCCATGACCGTTTATATTGCGGTCTTCTCTGCAACTTGGGGACCTGTAATGTGGGTAATGATCGGTGAAATCTTCCCGCTAAATATTCGGGGATTAGGAAATTCATTTGGTAGTTTTGTTAACTGGACTGCGAATGCGGTCGTTTCGTTAACCTTCCCATCATTGCTAAACATGTTTGGAAAAGGCAGCCTCTTTATTGGTTATGCCGCCCTCTGTTTCTTAGCAATGTGGTTTGTTTACGCTAAAGTCTTTGAAACCCGTAACCGCTCGCTAGAAGATATTGAAGCAGAATTGCGGAAGAACGACAAACGGGTTGAGGATTAG > 800 Phep_0757 PFAM:_Sugar_(and_other)_transporter;_TIGRFAM:_MFS_transporter,_sugar_porter_(SP)_family sugar_transporter YP_003091041.1 11 MSYVYKITIVAAVGGLLFGYDTAVVAGAIGFIQQRFDLSPAMMGWIASCALVGCITGAMFAGYLSDRFGRKKILILSAILFAVSSVGTAMPHELSWFVVFRILGGLGIGIASMISPMYITECAPAAIRGRLVSINQFGIVTGILLIYFVNAGIAGLYDEAWNIHTGWRWMFGSGIIPSVVFFILLMFVPESPRWLIQAGKAKEAEEILTKINGAAKAKTELAEIEAAIHTETGTFAELFKPGLRTALIIGIILSIVSQVTGINAIMYYAPEIFKSTGDGSGSALLQTILVGVVNLLFTIVAIKYVDRAGRKGLLMAGSAGMAICLAIIGMAFHMDAVKGYLVLVAILAYIACFALSLGPLTFVVIAEIFPNRVRGRAMSICLFFLWASVYFVSQFFPMLLKSIGSAYTFWIFMGTSIVAFLFVWKLVPETKGKSLEEIEKSWHKTGTV not_Sphingobacteria_Cavalier-Smith_2002 Pedobacter_heparinus_DSM_2366 Pedobacter_heparinus_DSM_2366 NC_013061 881416..882762 Han,C.,_Spring,S.,_Lapidus,A.,_Del_Rio,T.G.,_Tice,H.,_Copeland,A.,_Cheng,J.F.,_Lucas,S.,_Chen,F.,_Nolan,M.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Ivanova,N.,_Mavromatis,K.,_Mikhailova,N.,_Pati,A.,_Chen,A.,_Palaniappan,K.,_Land,M.,_Hauser,L.,_Chang,Y.J.,_Jeffries,C.C.,_Saunders,E.,_Chertkov,O.,_Brettin,T.,_Goker,M.,_Rohde,M.,_Bristow,J.,_Eisen,J.A.,_Markowitz,V.,_Hugenholtz,P.,_Kyrpides,N.C.,_Klenk,H.P._and_Detter,J.C. NA 0:1347 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001681.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4083041Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_Cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Pedobacter_heparinus_HIM_762-3,_DSM_2366Culture_Collection_ID_::_DSM_2366,_ATCC_13125,_IFO_12017,_NBRC_12017,_NCIB_9290GOLD_Stamp_ID_::_Gc01041Funding_Program_::_DOE-GEBA_2007Assembly_Method_::_PhrapSequencing_Depth_::_7.5xGene_Calling_Method_::_ProdigalIsolation_Site_::_SoilOxygen_Requirement_::_AerobeCell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileTemperature_Optimum_::_25_-_30CpH_::_7Gram_Staining_::_gram-Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_SoilPhenotypes_::_Chondroitinases_producer,_Heparinases_producerEnergy_Source_::_Chemoorganotroph##Metadata-END##COMPLETENESS:_full_length. NA 27-JAN-2012 Pedobacter_heparinus_DSM_2366_chromosome,_complete_genome. NA Sphingobacteriaceae_Steyn_et_al._1998 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pedobacter_heparinus_C6Y1K3_PEDHD.gb Pedobacter_Steyn_et_al._1998_emend._Vanparys_et_al._2005 255529916 Stand_Genomic_Sci_1_(1),_54-62_(2009) NA NC_013061 NA NA Sphingobacteriales Cytophaga-Flexibacter-Bacteroides_phylum 21304637 1347 NA genomic_DNA NA DSM_2366 NA Sphingobacterium_heparinum_(Payza_and_Korn_1956)_Takeuchi_and_Yokota_1993 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 485917 Bacteria,_Bacteroidetes,_Sphingobacteriia,_Sphingobacteriales,_Sphingobacteriaceae,_Pedobacter Complete_genome_sequence_of_Pedobacter_heparinus_type_strain_(HIM_762-3) NA NC_013061.1 ATGAGTTATGTATATAAGATCACGATTGTTGCGGCAGTAGGTGGCTTATTGTTTGGTTACGATACGGCAGTTGTGGCCGGAGCCATTGGTTTTATCCAGCAGCGGTTCGACCTTTCGCCGGCTATGATGGGCTGGATCGCCTCCTGTGCCCTGGTAGGCTGCATTACAGGAGCAATGTTTGCGGGGTACCTGAGCGACCGCTTTGGCCGTAAAAAGATCCTCATCCTTTCCGCCATCCTTTTTGCGGTATCATCTGTAGGTACTGCGATGCCGCATGAACTCAGTTGGTTTGTGGTATTCAGAATTTTAGGCGGACTGGGTATCGGCATTGCATCTATGATCTCGCCCATGTACATCACAGAATGTGCACCGGCAGCTATCCGTGGCCGCCTGGTTTCCATTAACCAGTTTGGCATTGTAACGGGTATCCTGCTCATTTATTTTGTAAATGCGGGCATTGCCGGCTTGTATGACGAAGCCTGGAACATCCATACCGGCTGGCGCTGGATGTTTGGCTCGGGCATCATACCTTCAGTGGTTTTCTTTATCCTGCTTATGTTTGTACCTGAAAGTCCGAGGTGGCTGATACAGGCGGGGAAAGCTAAAGAAGCAGAAGAGATCCTGACTAAAATTAATGGGGCAGCAAAGGCTAAAACAGAATTAGCTGAAATTGAAGCGGCTATCCATACCGAAACGGGTACCTTCGCCGAACTCTTTAAACCGGGATTAAGAACCGCACTGATCATCGGTATTATCCTTTCTATCGTATCACAGGTTACCGGCATCAACGCCATCATGTATTATGCACCCGAAATTTTTAAATCTACCGGCGATGGATCTGGTTCAGCCTTATTGCAGACTATACTGGTTGGGGTGGTCAACCTGTTGTTTACCATAGTGGCTATTAAATATGTAGACCGCGCCGGTCGTAAAGGCCTGCTCATGGCCGGCTCAGCAGGCATGGCCATTTGTCTGGCCATTATCGGCATGGCATTTCATATGGATGCCGTTAAAGGATACCTGGTATTGGTAGCTATCCTGGCCTATATTGCCTGTTTTGCCTTGTCATTAGGGCCTTTGACCTTTGTGGTTATAGCCGAGATCTTTCCAAACCGGGTGCGTGGCCGGGCCATGTCCATCTGTCTTTTCTTTCTCTGGGCCTCCGTTTATTTCGTATCCCAGTTTTTCCCCATGTTGTTAAAATCTATCGGCAGCGCTTATACTTTCTGGATCTTTATGGGCACTTCTATCGTCGCTTTTCTGTTTGTATGGAAGCTTGTTCCGGAAACCAAAGGGAAAAGTCTGGAAGAAATTGAAAAATCATGGCACAAAACCGGTACTGTTTAA > 801 Pc12g04270 Pc12g04270;_Title:_strong_similarity_to_high-affinity_glucose_transporter_HGT1_-_Kluyveromyces_lactis hypothetical_protein XP_002557297.1 NA MDEDIGTKMEKSVAEPSSEHEEVTVITTVETHYALGHSTDAYGPNGVRGLFSSGYVVGAALLASLGGFSFGYDQGVISIINVMDQFHAVFPETKTSFGTGFMTGMLLLGSFVGCLFMPYLADKVSRKWALTVVVVFFDIGAIIQTAAPNYGSLVAGRAIGGIGVGTLAMTAPLYISEIAPPNLRGTLLVLESVSLVSGVVIAYWITFGTRLLQGSISFRLPLGLQMVCATALGICIHFFPYSPRWLALVGRSEECLASLARLRNLPATDERVQAEYRGILAEVVFQRLVEEHSHPGVKGWKLEVHSWLDLLTKKNWRRTVVAVGVSFFQQFSGVNAFIYYAPTLFRSLGQSDEMSLILSGVFNTLQLVGVFICVATIDRVGRRPLAILGGFGCALCYMIISILSGLFSSDWMAHSAAGWACVAFAFLFILVFGVSYSPLGWALPSEVFTTASRSKGVALATCVNWLSNFIIGVATPPMMETQGYRTYIFFAVMCFSAGVWALLLVPETKGKTLEEMDEEFGDVQGPAERELMRSAVETVRRGIITEELRA bitunicate_ascomycetes Penicillium_chrysogenum_Wisconsin_54-1255 Penicillium_chrysogenum_Wisconsin_54-1255 XM_002557251 NA van_den_Berg,M.A.,_Albang,R.,_Albermann,K.,_Badger,J.H.,_Daran,J.M.,_Driessen,A.J.,_Garcia-Estrada,C.,_Fedorova,N.D.,_Harris,D.M.,_Heijne,W.H.,_Joardar,V.,_Kiel,J.A.,_Kovalchuk,A.,_Martin,J.F.,_Nierman,W.C.,_Nijland,J.G.,_Pronk,J.T.,_Roubos,J.A.,_van_der_Klei,I.J.,_van_Peij,N.N.,_Veenhuis,M.,_von_Dohren,H.,_Wagner,C.,_Wortman,J._and_Bovenberg,R.A. NA 0:1653 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020073).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2009 Penicillium_chrysogenum_Wisconsin_54-1255_hypothetical_protein_(Pc12g04270)_mRNA,_complete_cds. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_chrysogenum_B6GXL2_PENCW.gb Penicillium 255931480 Nat._Biotechnol._26_(10),_1161-1168_(2008) fungi XM_002557251 NA NA green_and_blue_molds sac_fungi 18820685 1653 NA mRNA NA Wisconsin_54-1255 NA Penicillium_notatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 500485 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium,_Penicillium_chrysogenum_complex Genome_sequencing_and_analysis_of_the_filamentous_fungus_Penicillium_chrysogenum NA XM_002557251.1 ATGGACGAAGACATAGGCACAAAGATGGAAAAGTCCGTGGCTGAACCATCTTCAGAACATGAGGAAGTAACTGTCATCACCACCGTCGAAACGCATTATGCGCTCGGCCATTCCACCGATGCGTACGGCCCTAATGGGGTGCGAGGTCTTTTTTCATCCGGCTACGTGGTTGGGGCGGCCTTATTGGCCTCGCTGGGTGGTTTCTCGTTTGGATATGACCAAGGTGTCATCTCCATCATCAATGTGATGGACCAGTTCCATGCAGTCTTCCCCGAGACTAAGACTTCATTTGGCACGGGGTTCATGACTGGAATGCTGTTGCTTGGGTCGTTTGTTGGTTGTCTGTTCATGCCTTACCTTGCAGACAAGGTCTCCAGGAAGTGGGCATTGACTGTTGTTGTGGTTTTCTTTGACATTGGTGCAATCATTCAGACAGCTGCCCCAAACTATGGAAGTCTAGTTGCTGGGAGAGCGATCGGTGGTATCGGCGTGGGTACTTTGGCTATGACAGCACCTCTCTACATCTCGGAAATTGCACCACCGAACCTTCGTGGGACATTGCTAGTTCTGGAGTCCGTTTCTCTCGTCTCCGGGGTTGTGATCGCATATTGGATCACCTTCGGAACCCGACTCCTACAAGGCTCTATCTCTTTCCGACTTCCCCTCGGCCTACAGATGGTATGTGCTACGGCACTAGGCATTTGTATACACTTCTTCCCGTATTCTCCACGGTGGCTTGCACTCGTGGGCCGTTCCGAAGAATGTCTGGCCAGCTTGGCCAGGCTCCGAAACCTCCCGGCTACAGATGAGCGCGTGCAAGCCGAATACCGTGGCATCCTCGCGGAGGTCGTCTTTCAGCGCCTTGTGGAAGAACACTCCCATCCTGGGGTTAAGGGCTGGAAGCTGGAAGTGCACAGTTGGCTAGATTTGTTAACGAAGAAAAATTGGCGCCGGACGGTTGTCGCAGTCGGTGTATCCTTTTTCCAACAGTTCTCCGGCGTCAACGCGTTCATTTACTACGCGCCTACTCTGTTCCGGTCACTCGGCCAATCAGATGAGATGTCGTTGATACTATCTGGCGTCTTCAATACCCTGCAGCTTGTTGGGGTCTTTATTTGCGTTGCAACAATTGACCGAGTGGGACGTCGCCCTCTTGCCATTTTGGGTGGGTTTGGCTGCGCCCTCTGCTACATGATCATCTCGATCCTAAGCGGGTTATTTTCCAGTGATTGGATGGCTCATTCTGCAGCTGGCTGGGCCTGTGTTGCCTTCGCCTTCTTATTTATTCTAGTCTTTGGTGTTTCCTACTCACCTTTGGGGTGGGCACTTCCTTCGGAGGTTTTCACCACAGCGTCTAGATCCAAGGGCGTCGCTTTGGCCACCTGTGTCAACTGGCTCTCCAATTTCATCATTGGAGTAGCTACACCCCCGATGATGGAAACCCAGGGCTATCGAACCTATATCTTCTTCGCGGTGATGTGCTTTTCGGCTGGGGTCTGGGCACTGCTATTGGTTCCTGAGACTAAAGGCAAAACACTCGAGGAAATGGACGAGGAGTTTGGGGATGTGCAGGGTCCTGCTGAGAGAGAGCTTATGAGATCCGCTGTTGAAACGGTGAGGCGGGGTATTATAACCGAAGAGCTGAGAGCTTAG > 802 Pc12g05120 Pc12g05120;_Title:_strong_similarity_to_high-affinity_glucose_transporter_HGT1_-_Kluyveromyces_lactis hypothetical_protein XP_002557359.1 NA MTPRNGPNTQMHGLVGKPLLYFTSVFVSLGVFLFGYDQGVMSGIITCSGWYFKDYFNQPSRATIGTVVAVLEIGAFISSLLVGRVGDMIGRRRTILYGSIVFFIGGAFQAFATGIPMMMVGRVVAGLGVGALSTIVPVYQSEISVCMLTNFKPPHNRGKLACIEFTGNIAGYATSVWVDYFCSFIDSDYSWRLPLLFQCIMGALLGLGSLVICESPRWLLDNDHDEEGMVVIANLYGEGDLLNDKARQEYREIKMNVLVQRQEGERSYSDMFRRYRKRVLIAMSAQALAQLNGINVISYYAPLVFESAGWVGRDAILMTGINGISYLLSTIPPWYLVDGWGRRPILLSGAVAMLISLSLISYFIYIEIPATPTLTVIFVMVYNAAFGASWGPIPWLYPPEILPLSIRAKGASLSTASNWAFNWLVGEVTPVLQEVIKWRLYLVHAFFCACSFVLVYFLYPETSGVRLEDMNDLFGDASTAMPTPATQGERGSLMGAGSPVPSLDLRRQYGQFGAESSIPGLDIDPPTSSHEGSSKRGRSDSHQGSVRGEGIGGWISNMVGRNRGAPGATSSQYRRLEQGEGDEQ bitunicate_ascomycetes Penicillium_chrysogenum_Wisconsin_54-1255 Penicillium_chrysogenum_Wisconsin_54-1255 XM_002557313 NA van_den_Berg,M.A.,_Albang,R.,_Albermann,K.,_Badger,J.H.,_Daran,J.M.,_Driessen,A.J.,_Garcia-Estrada,C.,_Fedorova,N.D.,_Harris,D.M.,_Heijne,W.H.,_Joardar,V.,_Kiel,J.A.,_Kovalchuk,A.,_Martin,J.F.,_Nierman,W.C.,_Nijland,J.G.,_Pronk,J.T.,_Roubos,J.A.,_van_der_Klei,I.J.,_van_Peij,N.N.,_Veenhuis,M.,_von_Dohren,H.,_Wagner,C.,_Wortman,J._and_Bovenberg,R.A. NA 0:1755 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020073).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2009 Penicillium_chrysogenum_Wisconsin_54-1255_hypothetical_protein_(Pc12g05120)_mRNA,_complete_cds. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_chrysogenum_B6GYU6_PENCW.gb Penicillium 255931604 Nat._Biotechnol._26_(10),_1161-1168_(2008) fungi XM_002557313 NA NA green_and_blue_molds sac_fungi 18820685 1755 NA mRNA NA Wisconsin_54-1255 NA Penicillium_notatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 500485 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium,_Penicillium_chrysogenum_complex Genome_sequencing_and_analysis_of_the_filamentous_fungus_Penicillium_chrysogenum NA XM_002557313.1 ATGACACCCAGAAATGGGCCAAACACCCAGATGCACGGGTTAGTGGGAAAGCCATTACTTTACTTCACGAGTGTGTTTGTATCATTGGGTGTCTTTCTTTTTGGCTATGACCAGGGTGTAATGTCTGGCATCATAACATGTAGTGGCTGGTACTTCAAAGATTACTTCAACCAGCCTTCTCGGGCTACAATTGGTACTGTGGTTGCGGTTCTTGAAATTGGAGCATTCATATCCTCGCTCCTCGTCGGACGTGTTGGTGATATGATCGGCCGTCGAAGGACTATACTCTATGGCTCCATTGTGTTCTTCATTGGCGGTGCTTTCCAAGCATTTGCCACGGGCATTCCCATGATGATGGTCGGTCGTGTCGTTGCCGGTCTAGGCGTCGGTGCCCTCTCTACCATTGTGCCAGTCTACCAATCTGAAATCTCGGTTTGTATGCTGACGAATTTCAAGCCTCCTCACAACCGTGGGAAACTCGCATGCATTGAATTCACCGGCAATATTGCTGGGTATGCAACTAGTGTGTGGGTAGACTATTTCTGTAGCTTCATCGATAGCGACTACTCCTGGCGCCTGCCACTCCTTTTCCAGTGCATCATGGGTGCCTTGCTTGGACTTGGCAGTCTGGTGATCTGTGAATCACCTAGGTGGCTTCTTGATAATGACCACGACGAGGAGGGCATGGTGGTAATCGCAAATCTTTATGGGGAAGGAGATCTCCTTAATGACAAGGCCCGCCAAGAATATCGTGAGATCAAGATGAACGTCCTCGTTCAGCGACAGGAGGGCGAGCGATCTTACTCAGACATGTTCCGCCGGTATCGCAAACGTGTTTTGATTGCAATGTCGGCCCAGGCCCTAGCTCAGCTCAACGGGATCAACGTAATCTCATACTATGCGCCTCTTGTGTTTGAATCGGCCGGCTGGGTTGGACGGGATGCCATCCTCATGACTGGAATCAATGGTATTTCATACTTGCTGTCCACCATACCACCATGGTATCTTGTGGATGGCTGGGGTCGGCGACCAATTTTACTTTCGGGTGCCGTTGCTATGCTCATCTCGCTTTCTCTTATCTCCTACTTTATTTACATTGAAATTCCCGCCACCCCGACCCTGACGGTCATCTTCGTTATGGTCTATAACGCAGCTTTTGGGGCATCTTGGGGCCCCATTCCATGGTTATATCCCCCGGAGATTTTGCCTTTGAGTATTCGTGCCAAAGGTGCAAGTTTGAGCACCGCTTCAAATTGGGCATTCAATTGGCTCGTGGGCGAGGTGACCCCTGTTCTTCAGGAAGTTATCAAGTGGCGGCTATATCTGGTCCATGCTTTCTTTTGTGCATGCAGTTTTGTGCTTGTTTATTTCTTGTACCCCGAAACGAGTGGGGTTCGCCTCGAAGATATGAACGATCTTTTTGGCGATGCTTCTACCGCCATGCCGACGCCGGCCACTCAAGGCGAACGGGGATCGCTAATGGGTGCTGGTTCACCCGTCCCATCGCTCGATCTGCGTCGACAGTATGGTCAATTTGGGGCGGAGAGTTCCATCCCTGGCCTAGATATCGATCCGCCGACTTCAAGCCATGAAGGGAGCAGCAAACGTGGACGCTCGGATTCTCATCAGGGCAGTGTGCGCGGCGAAGGAATTGGTGGCTGGATCTCAAACATGGTTGGTCGAAATCGAGGGGCCCCGGGCGCTACCAGCAGTCAATATAGACGTTTGGAGCAAGGAGAAGGAGACGAGCAATGA > 803 Pc12g02140 Pc12g02140;_Title:_strong_similarity_to_glucose_transporter_rco-3_-_Neurospora_crassa hypothetical_protein XP_002557107.1 NA MVDKHESPETEHLESDIKPKPSTLPPGSERQPYGEAGLKGILTNKYVAVCAAFATLGGAMFGYDQGVVSVTLTMDHFLARFPEVGPDAPGAGFQKGILTAMIELGAFIGAMNQGWIADKISRKWSIMVAVIIFLFGSALQTGAMSFDMLVGARFVGGIGVGMLAMVAPLYISEIAPPEIRGTLLVLQELSIVTAIVIAFYITYATRYIPNEWSWRLPFLIQMVPAIFLGVGMPFLPYSPRWLAGRGRDEEALQVLCKLRGLDATDERVIREWVEIRSEVAYCNEVSIVRHPNCQDGSYTSRAMLHVWSYLDCFRKGCWKRTHVGMGLMFFQQFGGVNALIYYSPSLFEGMGLDYSMQLHMSGVINICQMVACFWSLWGMDKFGRRPLLFGGASCMILAHLIIAVLMSQYQSNWPEHSTEGWVCVAFLCFFMLSYGASWGPVPWALPAEIFPSSLRAKGMAFSTMSVWLNNFIIGLITPPLVQNTGYGTYVFFCAFCALSFAWTWFFVPETNGKTLEEMDAVFGDNSSSVETEQRARIEATIWANAAARSDGLDGTHQIT bitunicate_ascomycetes Penicillium_chrysogenum_Wisconsin_54-1255 Penicillium_chrysogenum_Wisconsin_54-1255 XM_002557061 NA van_den_Berg,M.A.,_Albang,R.,_Albermann,K.,_Badger,J.H.,_Daran,J.M.,_Driessen,A.J.,_Garcia-Estrada,C.,_Fedorova,N.D.,_Harris,D.M.,_Heijne,W.H.,_Joardar,V.,_Kiel,J.A.,_Kovalchuk,A.,_Martin,J.F.,_Nierman,W.C.,_Nijland,J.G.,_Pronk,J.T.,_Roubos,J.A.,_van_der_Klei,I.J.,_van_Peij,N.N.,_Veenhuis,M.,_von_Dohren,H.,_Wagner,C.,_Wortman,J._and_Bovenberg,R.A. NA 0:1680 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020073).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2009 Penicillium_chrysogenum_Wisconsin_54-1255_hypothetical_protein_(Pc12g02140)_mRNA,_complete_cds. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_chrysogenum_B6GZM2_PENCW.gb Penicillium 255931100 Nat._Biotechnol._26_(10),_1161-1168_(2008) fungi XM_002557061 NA NA green_and_blue_molds sac_fungi 18820685 1680 NA mRNA NA Wisconsin_54-1255 NA Penicillium_notatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 500485 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium,_Penicillium_chrysogenum_complex Genome_sequencing_and_analysis_of_the_filamentous_fungus_Penicillium_chrysogenum NA XM_002557061.1 ATGGTGGACAAACACGAATCCCCGGAGACCGAACATCTTGAATCCGATATAAAACCAAAACCTTCTACCCTTCCCCCTGGATCAGAACGACAACCATATGGCGAAGCTGGCCTCAAGGGTATCCTCACGAACAAGTATGTCGCAGTATGTGCCGCCTTTGCAACATTGGGCGGAGCAATGTTCGGCTACGACCAGGGCGTCGTCTCCGTAACACTTACAATGGACCACTTCCTTGCGCGATTTCCTGAAGTTGGCCCCGATGCACCCGGTGCAGGATTCCAAAAAGGAATCCTCACTGCCATGATCGAGCTGGGCGCCTTTATTGGAGCAATGAACCAGGGATGGATTGCCGACAAGATCTCTCGCAAGTGGTCCATCATGGTTGCAGTTATAATATTCCTCTTTGGTTCCGCCCTGCAGACTGGAGCCATGAGCTTCGACATGCTCGTTGGTGCCCGTTTCGTCGGAGGTATTGGTGTCGGCATGCTGGCTATGGTGGCACCGCTGTATATCTCTGAGATCGCGCCACCTGAGATTCGCGGTACTTTGCTTGTTCTGCAGGAGCTTTCCATTGTTACTGCTATCGTGATTGCCTTCTATATCACATATGCTACACGATATATTCCTAATGAATGGTCGTGGCGCCTTCCTTTCCTCATTCAGATGGTTCCTGCCATATTCCTTGGCGTCGGTATGCCTTTCCTACCATATTCACCTCGATGGCTCGCTGGTCGAGGCCGAGACGAAGAAGCGCTCCAGGTTCTCTGCAAATTACGAGGTCTCGATGCCACTGACGAGCGCGTGATCCGAGAATGGGTCGAGATTCGATCCGAGGTCGCCTATTGCAACGAAGTGAGCATTGTGCGACACCCAAATTGCCAGGATGGAAGTTACACTAGTCGTGCTATGCTGCATGTCTGGAGCTATCTGGACTGTTTCCGCAAAGGGTGTTGGAAGCGTACGCATGTCGGCATGGGGCTGATGTTTTTCCAACAATTCGGCGGTGTCAATGCTCTCATCTACTATTCACCCAGTCTATTCGAAGGAATGGGTCTAGACTACTCCATGCAACTCCACATGTCCGGCGTCATCAACATCTGCCAGATGGTTGCCTGTTTCTGGTCACTATGGGGAATGGATAAATTCGGTCGGAGACCTTTGCTCTTTGGCGGTGCTAGCTGTATGATTCTTGCGCATCTCATCATCGCCGTCCTGATGAGTCAATACCAGTCCAACTGGCCCGAGCATTCCACGGAGGGATGGGTTTGCGTCGCCTTCTTGTGCTTCTTCATGCTGAGCTACGGAGCTTCTTGGGGTCCTGTCCCTTGGGCCCTGCCAGCTGAGATCTTTCCTTCCTCGCTTCGTGCTAAGGGTATGGCGTTTTCCACAATGTCGGTGTGGCTTAACAACTTCATCATTGGACTTATTACCCCGCCGCTTGTGCAAAACACTGGATATGGAACTTACGTGTTCTTCTGCGCATTTTGCGCCCTGTCATTTGCTTGGACGTGGTTCTTCGTTCCTGAGACTAATGGGAAAACATTGGAGGAAATGGACGCTGTCTTTGGGGATAATTCTTCCAGTGTGGAGACGGAGCAGCGCGCGAGGATTGAAGCTACAATCTGGGCCAATGCTGCGGCACGATCCGATGGACTCGACGGCACTCATCAAATTACTTAG > 804 Pc12g03220 Pc12g03220;_Title:_strong_similarity_to_high-affinity_glucose_transporter_HGT1_-_Kluyveromyces_lactis hypothetical_protein XP_002557208.1 NA MSGISCIQAVRDTLGNTLAFFPGQLTVKSQVKSWWKTKHLIHLNSLIASLILFSSTFGYDISLMNSLQSLPQWQTFMNHPKGIKLGFINALQSIGSILFLPIQAWSANRFGRKPTVLAGYIFIVLGVGLQAAAPNANSFIYSRLLVGIASAWFQCAVILVTEIAYPSHRSLVTAIYMCQYYVGSSLSAWVSFGMRNVQSSWSWRVPVLMQIALPLLALPGTLAVPDSPRWLISCGRLEEAKRILVRFHAGGDEGSQLVTSEMEEISRGLTAERMARQEARWIDCVKTRGNRYRLFLSVSLGIFAQWNGGGVVSYYLSLILDTIGVTSSTDQTLINGFLQLWNLIMSVVGACLVDRAGRRPLFITSTVIMLISYIFITALSGSFTTTGTSAVGTAVIPFLFIYYAGYDIAFTPLLLAYPAEIWTTSLRAKGVAISTISNYMALIFNQLINPIAFQRISWKYYFVFLAVLLVVLVVVWRTYPETRGRSLEDIAFIFDGEEARVTGMDPNVTEKRLTGTNEHQEL bitunicate_ascomycetes Penicillium_chrysogenum_Wisconsin_54-1255 Penicillium_chrysogenum_Wisconsin_54-1255 XM_002557162 NA van_den_Berg,M.A.,_Albang,R.,_Albermann,K.,_Badger,J.H.,_Daran,J.M.,_Driessen,A.J.,_Garcia-Estrada,C.,_Fedorova,N.D.,_Harris,D.M.,_Heijne,W.H.,_Joardar,V.,_Kiel,J.A.,_Kovalchuk,A.,_Martin,J.F.,_Nierman,W.C.,_Nijland,J.G.,_Pronk,J.T.,_Roubos,J.A.,_van_der_Klei,I.J.,_van_Peij,N.N.,_Veenhuis,M.,_von_Dohren,H.,_Wagner,C.,_Wortman,J._and_Bovenberg,R.A. NA 0:1569 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020073).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2009 Penicillium_chrysogenum_Wisconsin_54-1255_hypothetical_protein_(Pc12g03220)_mRNA,_complete_cds. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_chrysogenum_B6H0V2_PENCW.gb Penicillium 255931302 Nat._Biotechnol._26_(10),_1161-1168_(2008) fungi XM_002557162 NA NA green_and_blue_molds sac_fungi 18820685 1569 NA mRNA NA Wisconsin_54-1255 NA Penicillium_notatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 500485 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium,_Penicillium_chrysogenum_complex Genome_sequencing_and_analysis_of_the_filamentous_fungus_Penicillium_chrysogenum NA XM_002557162.1 ATGTCTGGAATTTCATGCATTCAGGCAGTTCGAGATACACTCGGTAATACCCTCGCCTTCTTTCCTGGACAACTAACAGTCAAATCCCAGGTCAAATCATGGTGGAAAACCAAGCACCTCATCCACCTAAACAGTCTAATAGCAAGCCTAATCCTCTTCTCCAGCACATTCGGCTACGACATCTCCCTAATGAACAGCCTCCAGTCCCTACCCCAATGGCAAACCTTCATGAACCACCCAAAAGGAATAAAACTCGGCTTCATAAACGCCCTCCAAAGCATAGGCAGCATACTCTTCCTACCCATCCAAGCATGGTCCGCCAACCGCTTCGGCCGAAAACCCACAGTCCTCGCGGGGTACATCTTCATCGTCCTTGGCGTGGGACTCCAAGCCGCCGCCCCAAACGCCAACTCATTCATCTACTCCCGTCTACTGGTAGGCATCGCCAGCGCCTGGTTCCAGTGCGCTGTGATCCTCGTCACGGAAATCGCGTATCCGTCGCATCGCTCGCTCGTCACGGCCATCTACATGTGCCAGTACTATGTCGGGTCCTCGCTGTCGGCGTGGGTTTCCTTCGGCATGAGGAATGTGCAGAGTAGCTGGTCGTGGCGTGTGCCTGTTCTTATGCAGATTGCATTGCCGCTTCTCGCCTTGCCTGGGACGTTAGCTGTGCCAGATTCGCCGCGTTGGCTGATTAGCTGTGGGCGACTTGAGGAAGCGAAGCGTATTTTGGTTAGGTTCCATGCTGGTGGGGATGAGGGTTCGCAGTTGGTGACTTCTGAGATGGAGGAGATTAGCCGGGGTCTGACGGCGGAGCGGATGGCTCGACAGGAGGCGCGCTGGATTGATTGTGTCAAGACTCGTGGGAATCGGTACCGGCTTTTCTTGAGTGTTTCTTTGGGTATTTTTGCTCAGTGGAATGGAGGTGGTGTTGTATCATACTACCTATCCCTTATCCTCGATACAATCGGTGTAACCTCGTCAACAGACCAGACACTCATAAACGGCTTCCTCCAGCTCTGGAACCTGATTATGAGCGTGGTAGGGGCATGTCTTGTCGACCGCGCTGGCCGCCGTCCGCTCTTCATCACATCGACTGTGATCATGCTGATCAGTTATATCTTCATTACTGCTCTCTCCGGCAGCTTCACGACGACGGGTACTAGTGCCGTTGGAACAGCTGTGATCCCGTTCTTGTTCATCTACTATGCAGGCTACGACATCGCGTTCACGCCACTGCTCCTGGCGTACCCGGCGGAGATCTGGACGACCTCGCTGCGTGCTAAGGGTGTTGCTATATCCACGATCTCGAATTATATGGCACTGATTTTCAATCAGCTCATTAACCCTATTGCGTTTCAAAGAATCTCTTGGAAATATTATTTTGTGTTTTTGGCCGTGTTGCTTGTTGTCTTGGTTGTTGTTTGGAGGACTTACCCTGAAACTAGAGGCAGGTCGCTTGAAGACATTGCTTTTATTTTTGATGGCGAGGAGGCGCGTGTTACTGGTATGGATCCTAATGTTACCGAGAAAAGACTTACAGGGACAAATGAACATCAAGAGTTATGA > 805 Pc13g08350 Pc13g08350 hypothetical_protein XP_002559260.1 NA MSILKLVEDRPTPRAVYNWRIYLLAAVASCTSCMIGYDSAFIGTTLSLASFKSEFGFNEMSSATQDLISANIVSCYQAGAFFGAFFAYPIGHFWGRRIGLLSAGLVFTLGAGIMLGANSDRGLGLLYGGRVLAGLGVGAGSNITPIYISELAPPAIRGRLVGVYELGWQIGGLVGFWINFGVDETMAPSHKQWLIPFAVQLIPSGMLLIGGYFIRESPRWLFGRGRREHAIKNLCWIRQLPEDDIYMIEEIGAIDQALDEQRRSIGIGFWKPFKAAGTNKKVMWRLFLGGALFFWQNGSGINAINYYSPTVFKSIGVRGTNTSLFTTGIFGVVKTVVTFIWLLWLIDHVGRRNLLLIGAAGGSVCLWIVGAYIKIAQPENNTSDSLSGGGIAAMFFFYLWTVFYTPTWNGTPWVLNSEMFDPNMRSLAQACAAASNWFWNFLISRFTPQMFSSMGYAVYFFFASLMILSIIFVYFLIPETKGVPLESMDQLFDIKPVWRAHGQMLAQLRENEERFRNDVEAAGIDVGKVRPEQVEDNAVEPKYA bitunicate_ascomycetes Penicillium_chrysogenum_Wisconsin_54-1255 Penicillium_chrysogenum_Wisconsin_54-1255 XM_002559214 NA van_den_Berg,M.A.,_Albang,R.,_Albermann,K.,_Badger,J.H.,_Daran,J.M.,_Driessen,A.J.,_Garcia-Estrada,C.,_Fedorova,N.D.,_Harris,D.M.,_Heijne,W.H.,_Joardar,V.,_Kiel,J.A.,_Kovalchuk,A.,_Martin,J.F.,_Nierman,W.C.,_Nijland,J.G.,_Pronk,J.T.,_Roubos,J.A.,_van_der_Klei,I.J.,_van_Peij,N.N.,_Veenhuis,M.,_von_Dohren,H.,_Wagner,C.,_Wortman,J._and_Bovenberg,R.A. NA 0:1635 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020074).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2009 Penicillium_chrysogenum_Wisconsin_54-1255_hypothetical_protein_(Pc13g08350)_mRNA,_complete_cds. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_chrysogenum_B6H4D5_PENCW.gb Penicillium 255936466 Nat._Biotechnol._26_(10),_1161-1168_(2008) fungi XM_002559214 NA NA green_and_blue_molds sac_fungi 18820685 1635 NA mRNA NA Wisconsin_54-1255 NA Penicillium_notatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 500485 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium,_Penicillium_chrysogenum_complex Genome_sequencing_and_analysis_of_the_filamentous_fungus_Penicillium_chrysogenum NA XM_002559214.1 ATGTCTATCCTGAAGCTAGTCGAGGACCGGCCGACGCCTCGCGCGGTCTACAACTGGAGAATCTATCTTTTGGCCGCGGTGGCCTCATGCACATCCTGCATGATTGGCTACGACAGTGCTTTCATCGGCACTACCCTCTCTCTTGCCTCCTTCAAGAGCGAGTTCGGATTCAACGAGATGTCCAGTGCTACGCAGGATCTGATCAGCGCAAACATTGTCTCGTGCTACCAGGCCGGTGCCTTCTTTGGTGCCTTCTTCGCGTATCCCATCGGTCACTTCTGGGGTCGTAGGATTGGCCTGTTGTCTGCTGGCTTGGTTTTCACTCTCGGTGCTGGTATCATGCTTGGTGCTAATAGCGACCGAGGACTAGGCCTCCTTTATGGTGGCCGAGTCCTCGCCGGTCTTGGTGTCGGAGCAGGCTCTAACATCACCCCAATTTACATCTCCGAATTGGCTCCTCCGGCTATTCGGGGTAGATTGGTTGGTGTGTATGAGCTGGGCTGGCAGATTGGTGGTCTTGTTGGATTCTGGATCAACTTCGGTGTTGACGAGACCATGGCACCGAGCCACAAGCAATGGCTTATTCCTTTTGCTGTTCAGCTGATTCCTTCTGGTATGTTGCTCATTGGTGGCTACTTCATCCGGGAATCGCCTCGTTGGCTGTTCGGACGCGGTCGCCGTGAGCATGCTATCAAGAATCTTTGCTGGATCCGCCAGCTGCCCGAGGACGATATCTATATGATCGAGGAGATCGGTGCCATTGACCAGGCCCTGGATGAACAACGCCGTAGCATTGGTATTGGCTTCTGGAAGCCCTTCAAGGCCGCCGGGACCAACAAGAAGGTTATGTGGCGTCTGTTCCTTGGAGGTGCACTGTTCTTCTGGCAGAATGGATCTGGAATCAATGCTATCAACTATTACAGTCCCACTGTCTTCAAATCGATCGGTGTCAGGGGTACCAACACTAGTCTGTTCACAACTGGAATCTTCGGCGTAGTGAAGACTGTCGTGACTTTCATTTGGCTGCTGTGGCTGATTGATCACGTCGGTCGCCGTAACCTGTTGTTGATTGGCGCAGCAGGTGGTTCCGTGTGTTTGTGGATTGTCGGCGCGTACATCAAGATCGCCCAACCCGAAAATAACACGAGTGACAGCTTGAGCGGCGGTGGTATCGCAGCGATGTTCTTCTTCTACCTGTGGACCGTCTTCTATACCCCAACCTGGAACGGTACCCCATGGGTCCTAAACTCGGAAATGTTCGATCCCAACATGCGTTCCCTGGCACAGGCATGCGCCGCCGCTTCCAATTGGTTCTGGAACTTCCTCATCTCGCGCTTCACTCCGCAGATGTTCTCATCAATGGGGTACGCTGTATACTTCTTCTTCGCATCATTGATGATTCTGTCCATTATCTTTGTGTACTTCCTCATCCCTGAAACCAAGGGTGTTCCCCTGGAGAGCATGGACCAGCTCTTCGACATCAAGCCCGTGTGGCGTGCCCATGGGCAAATGCTCGCTCAGCTGCGCGAGAATGAAGAAAGGTTCCGCAACGACGTCGAGGCCGCCGGCATTGACGTGGGCAAAGTCCGCCCTGAGCAAGTTGAGGATAATGCGGTTGAGCCAAAGTATGCTTGA > 806 Pc16g05700 Pc16g05700 hypothetical_protein XP_002560909.1 NA MWVSYTTPLARIYYDVRRVQSPHPRQIAATDFSPELTTLLSTLPRNGECFARSGGSLSGGFDIVAGSQLVSLPAFRKQFGILQPSGNYLIPAYYISAWSSIAPACEIVATFIVVPSLEKFGRKPGILVATVISVAGVLLQQLATDWRTHLAGRGVNGIAIGIMFTISPLWIGETCRPELRGFFLCFFNTSIVFGQFAIVVVSKGASNIDGKCMTGNGGSRWWPFILVTAWFFFPESPYWLVRYGKSAQAKKELRKVYGFNDDNFYDIEIRRMEEEIRLAAQIQETAATHNYKFLGVDMSAEVECFKSKNRKRTFTAIFAASGQQMIGATFVIGYATYFLELIHVKAYFDASVVLYVVMLLSCMAAFPLTEILGRRTLIVWPQFALCFILLVIGILGCVPDQTKASWGIIVFIYLWSIIFQLSIGATGFVLASEIATMRLRGATQGLVTISNAVWGLVMQFTIPYMINPDAGNLGGRVGFIFLGTGLVAAIGGWFLYPETKGISLEKLDELYAMHVAPRHFKRVGNELGLAGELGPVGETQKGESVHIE bitunicate_ascomycetes Penicillium_chrysogenum_Wisconsin_54-1255 Penicillium_chrysogenum_Wisconsin_54-1255 XM_002560863 NA van_den_Berg,M.A.,_Albang,R.,_Albermann,K.,_Badger,J.H.,_Daran,J.M.,_Driessen,A.J.,_Garcia-Estrada,C.,_Fedorova,N.D.,_Harris,D.M.,_Heijne,W.H.,_Joardar,V.,_Kiel,J.A.,_Kovalchuk,A.,_Martin,J.F.,_Nierman,W.C.,_Nijland,J.G.,_Pronk,J.T.,_Roubos,J.A.,_van_der_Klei,I.J.,_van_Peij,N.N.,_Veenhuis,M.,_von_Dohren,H.,_Wagner,C.,_Wortman,J._and_Bovenberg,R.A. NA 0:1647 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020077).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2009 Penicillium_chrysogenum_Wisconsin_54-1255_hypothetical_protein_(Pc16g05700)_mRNA,_complete_cds. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_chrysogenum_B6H8G4_PENCW.gb Penicillium 255940279 Nat._Biotechnol._26_(10),_1161-1168_(2008) fungi XM_002560863 NA NA green_and_blue_molds sac_fungi 18820685 1647 NA mRNA NA Wisconsin_54-1255 NA Penicillium_notatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 500485 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium,_Penicillium_chrysogenum_complex Genome_sequencing_and_analysis_of_the_filamentous_fungus_Penicillium_chrysogenum NA XM_002560863.1 ATGTGGGTATCATACACTACTCCATTGGCGAGGATCTATTACGATGTCCGACGAGTACAGAGCCCACACCCTCGGCAGATTGCAGCTACTGACTTCTCGCCAGAATTGACTACACTGTTATCAACCCTACCAAGAAATGGCGAATGCTTCGCTCGCAGTGGCGGTTCGCTCTCTGGGGGGTTCGACATTGTCGCGGGAAGTCAATTGGTATCGTTGCCTGCATTCCGAAAGCAATTTGGTATCCTTCAGCCGTCGGGTAACTACCTCATCCCTGCATATTACATCTCGGCTTGGAGCTCGATCGCCCCAGCATGTGAAATTGTCGCCACCTTTATCGTTGTTCCCTCACTGGAGAAGTTTGGCCGCAAGCCAGGTATTCTGGTGGCAACGGTGATATCTGTTGCTGGTGTCCTCCTGCAACAGTTGGCCACAGATTGGCGAACGCACCTTGCCGGCAGAGGAGTCAATGGAATTGCTATTGGTATCATGTTTACTATATCACCTCTGTGGATTGGGGAGACATGTCGACCAGAGCTACGGGGTTTCTTCCTCTGCTTCTTCAATACAAGCATTGTGTTTGGTCAATTCGCGATTGTCGTCGTCTCGAAGGGAGCAAGTAATATTGATGGAAAATGCATGACAGGCAATGGTGGCTCCCGGTGGTGGCCATTCATCCTCGTCACAGCATGGTTTTTCTTCCCCGAGTCGCCATATTGGCTAGTCCGGTACGGAAAATCAGCCCAGGCAAAGAAGGAATTAAGAAAGGTCTACGGCTTCAACGATGACAATTTCTACGACATTGAGATCCGGAGAATGGAAGAAGAAATCCGCCTTGCAGCCCAAATTCAGGAAACAGCAGCCACGCATAACTACAAGTTTTTAGGGGTGGACATGTCAGCAGAGGTCGAGTGCTTCAAAAGTAAAAACCGCAAACGAACCTTTACTGCTATCTTCGCTGCCAGTGGTCAGCAAATGATTGGAGCTACCTTCGTCATCGGCTACGCGACCTATTTCCTTGAATTGATCCACGTCAAAGCATATTTTGATGCGTCTGTGGTTCTCTACGTCGTCATGCTTTTGTCCTGTATGGCAGCCTTCCCCCTGACTGAGATTCTAGGACGTCGGACCCTGATCGTTTGGCCACAATTTGCACTGTGCTTCATTCTCTTGGTCATAGGCATTCTCGGATGTGTCCCAGACCAAACGAAAGCCAGTTGGGGAATTATAGTTTTTATCTACTTGTGGTCAATAATTTTCCAGCTTTCGATCGGGGCGACAGGGTTTGTTCTGGCGTCAGAAATTGCTACCATGCGTCTTCGTGGCGCAACCCAGGGACTTGTCACTATTTCCAACGCAGTCTGGGGCCTAGTCATGCAATTTACCATCCCGTACATGATCAATCCCGATGCAGGAAACTTGGGTGGCAGAGTCGGTTTCATCTTTCTAGGGACAGGACTTGTTGCTGCAATTGGGGGGTGGTTCTTATACCCGGAAACAAAGGGAATCTCGCTCGAAAAACTTGATGAACTATACGCAATGCACGTGGCGCCTAGACATTTCAAACGAGTGGGGAATGAACTAGGCCTGGCTGGTGAGCTAGGCCCCGTTGGGGAGACCCAGAAAGGCGAGAGCGTACACATTGAATAG > 807 Pc20g04030 Pc20g04030 hypothetical_protein XP_002562953.1 NA MAGGAAINVFKFNTGGLPKETLNFKLWFAVFAFGLMGAARGVDEGLITGVFNSHAFKRSVGIDDLDKDDLASVKGTISSMVQLGSVAGALLAFIVCDRIGRVWATRQLCVLWILGIAIFIGNNGNMAAVYAGRFIAGLGIGQTCVVGPIYLSEISPAPIRGLCTCMFTGAVYLGIMIAYFANWGTQIHMADTFNRWAVPTSLHLMFAGIILLLTFFQLESPRFYIKQGKREKALEVLCKLRGLPAHHPYVLNEISEMDVAYQEEMEATLGMGWKGLFKEILGIKRNAYRLFLTNLAQNMACWSGGSAITVYAPDLFTLVGITGQEQSLFSTVVFGVVKFVAAIICALFLVDMAGRKRSLIIGIVIQTVAMFYIAIFLNLVPIAENPDFVPSETQNRASTAAIAFIYISGVGWALGWNSGQYLLSSELFPLRIRGICSSITMAMHFICQYAVNRVLPEMLLEDTGLGPHGTFYFFGVISIVGGIWVWLFVPEAAGRSLETIDKMFDLPWYKIGLYGRKFAEEYDREQEAIYRDEKRDAGIVVSHNETA bitunicate_ascomycetes Penicillium_chrysogenum_Wisconsin_54-1255 Penicillium_chrysogenum_Wisconsin_54-1255 XM_002562907 NA van_den_Berg,M.A.,_Albang,R.,_Albermann,K.,_Badger,J.H.,_Daran,J.M.,_Driessen,A.J.,_Garcia-Estrada,C.,_Fedorova,N.D.,_Harris,D.M.,_Heijne,W.H.,_Joardar,V.,_Kiel,J.A.,_Kovalchuk,A.,_Martin,J.F.,_Nierman,W.C.,_Nijland,J.G.,_Pronk,J.T.,_Roubos,J.A.,_van_der_Klei,I.J.,_van_Peij,N.N.,_Veenhuis,M.,_von_Dohren,H.,_Wagner,C.,_Wortman,J._and_Bovenberg,R.A. NA 0:1644 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020080).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2009 Penicillium_chrysogenum_Wisconsin_54-1255_hypothetical_protein_(Pc20g04030)_mRNA,_complete_cds. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_chrysogenum_B6HD88_PENCW.gb Penicillium 255944370 Nat._Biotechnol._26_(10),_1161-1168_(2008) fungi XM_002562907 NA NA green_and_blue_molds sac_fungi 18820685 1644 NA mRNA NA Wisconsin_54-1255 NA Penicillium_notatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 500485 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium,_Penicillium_chrysogenum_complex Genome_sequencing_and_analysis_of_the_filamentous_fungus_Penicillium_chrysogenum NA XM_002562907.1 ATGGCGGGTGGTGCTGCTATCAACGTCTTCAAGTTCAACACAGGCGGCTTGCCCAAGGAGACACTCAATTTCAAGCTATGGTTCGCCGTCTTTGCATTCGGTCTCATGGGTGCCGCCCGTGGTGTTGACGAAGGTCTCATCACGGGTGTCTTCAACTCCCACGCTTTCAAGCGGTCTGTCGGTATTGACGACCTCGACAAAGATGATCTCGCTAGTGTCAAGGGTACTATTTCCTCCATGGTTCAGCTCGGCAGTGTCGCCGGTGCTCTTCTTGCTTTCATCGTTTGTGATCGTATCGGTCGTGTTTGGGCTACTCGCCAACTCTGTGTCCTCTGGATTCTTGGAATTGCCATCTTTATTGGAAACAATGGCAACATGGCTGCCGTCTACGCTGGTCGCTTCATTGCTGGTCTTGGTATTGGACAGACTTGCGTCGTCGGCCCGATCTACCTTTCTGAAATTTCTCCCGCTCCCATTCGTGGTCTCTGTACTTGTATGTTTACTGGTGCAGTGTACCTTGGTATCATGATTGCCTACTTCGCCAACTGGGGTACTCAGATTCACATGGCGGATACCTTCAACCGCTGGGCCGTCCCTACTTCACTCCACCTCATGTTTGCCGGCATCATCCTGCTCCTCACCTTCTTCCAGCTGGAGTCCCCCCGTTTCTACATCAAACAGGGCAAACGCGAGAAAGCCCTCGAGGTCCTCTGCAAGCTCCGTGGCCTACCCGCCCACCACCCATACGTCCTGAACGAGATCTCCGAAATGGACGTCGCCTACCAGGAAGAGATGGAGGCCACGCTCGGCATGGGCTGGAAGGGTCTATTCAAGGAGATCCTGGGCATCAAACGCAACGCGTACCGTCTATTCCTCACCAACCTGGCTCAGAACATGGCCTGCTGGTCCGGTGGCTCCGCTATTACGGTGTACGCGCCTGACTTGTTCACTCTCGTCGGTATCACCGGCCAAGAGCAGTCCCTCTTCTCGACCGTCGTCTTCGGTGTCGTGAAATTCGTCGCCGCTATCATCTGCGCTCTCTTCTTAGTCGATATGGCCGGTCGTAAACGCTCTCTCATCATTGGTATTGTCATCCAAACCGTTGCCATGTTCTACATCGCCATCTTCCTCAACCTCGTTCCTATCGCCGAAAACCCAGACTTCGTCCCCAGTGAGACGCAGAATCGTGCATCGACTGCCGCCATCGCTTTCATCTACATCTCTGGTGTTGGTTGGGCGCTTGGATGGAACAGTGGTCAGTACCTGCTGTCCTCGGAGCTGTTCCCTCTCCGTATTCGTGGTATTTGCTCGTCCATCACTATGGCCATGCACTTTATCTGTCAGTATGCTGTCAACCGTGTCCTCCCTGAGATGCTGCTCGAGGATACGGGTCTCGGCCCTCATGGGACATTCTACTTCTTTGGTGTTATTTCCATTGTTGGTGGTATCTGGGTTTGGCTCTTTGTGCCAGAGGCTGCTGGTCGCAGTCTCGAGACCATCGACAAGATGTTCGACCTTCCTTGGTACAAGATTGGTCTGTACGGAAGGAAGTTTGCTGAGGAGTACGACCGTGAACAGGAGGCGATTTACCGCGACGAGAAGAGGGATGCGGGAATTGTTGTCTCTCACAACGAGACTGCGTAG > 808 Pc20g09500 Pc20g09500 hypothetical_protein XP_002563446.1 NA MTLQALFLEATSNDFQSIRIDNPLANQEPAQLEAEVEEFHKRVNLNGVIDLEILIRGARIAQQRWGDAPPGFTPAEYEAIKNENSKSYLSFLQTRGLLVTVMATACAAITQHVFLGWQQSTINSSSLFLNWDVDFDLQDKLVIGFINAAPWLLGSLIGTWFSDPLQERFGRRPALFISAVFCVALVIGTARCTTWKTLLVCRVLLGVGIGSKASIAPIFTAEAAPDRHRGKVLMMWQLFDALGIFLGFLCALIVMDSWRVLLATAIIPAIVLLFLVFMCPESPRFLVQRNRYPEAYKSLLELRGTPIQAARDLYYIHAQLQTEAIYAYQKWINKGNFFKRMMYLATDKRTRRACTVASIVMASQQLCGINALTFYSSSILHSEHVNAGEPSEGLFPNATAVKWYNFAFGLANFLFTFPAYIYIDLRGRRPLLLVSFIGMFFSLVAFSGFFEIAHHDTRLILVAVFASVLFVFFYSIGAGPIPFTLSAEVFPLCVREVGMSFSVMINFLGLGLLVLFVPELTKAFGRQAHLLFFFSGMNVLALILIFLLVPETKDVSLENMNSIFNRATKEQVLIHAPLLEPLYPKT bitunicate_ascomycetes Penicillium_chrysogenum_Wisconsin_54-1255 Penicillium_chrysogenum_Wisconsin_54-1255 XM_002563400 NA van_den_Berg,M.A.,_Albang,R.,_Albermann,K.,_Badger,J.H.,_Daran,J.M.,_Driessen,A.J.,_Garcia-Estrada,C.,_Fedorova,N.D.,_Harris,D.M.,_Heijne,W.H.,_Joardar,V.,_Kiel,J.A.,_Kovalchuk,A.,_Martin,J.F.,_Nierman,W.C.,_Nijland,J.G.,_Pronk,J.T.,_Roubos,J.A.,_van_der_Klei,I.J.,_van_Peij,N.N.,_Veenhuis,M.,_von_Dohren,H.,_Wagner,C.,_Wortman,J._and_Bovenberg,R.A. NA <0:1761 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020080).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2009 Penicillium_chrysogenum_Wisconsin_54-1255_hypothetical_protein_(Pc20g09500)_mRNA,_partial_cds. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_chrysogenum_B6HFA9_PENCW.gb Penicillium 255945356 Nat._Biotechnol._26_(10),_1161-1168_(2008) fungi XM_002563400 NA NA green_and_blue_molds sac_fungi 18820685 1761 NA mRNA NA Wisconsin_54-1255 NA Penicillium_notatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 500485 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium,_Penicillium_chrysogenum_complex Genome_sequencing_and_analysis_of_the_filamentous_fungus_Penicillium_chrysogenum NA XM_002563400.1 ATGACCCTCCAAGCCCTGTTCCTTGAAGCAACTTCTAATGACTTTCAATCAATCAGAATAGACAACCCACTCGCCAACCAAGAACCCGCCCAATTAGAGGCCGAGGTTGAGGAATTTCATAAGCGTGTTAATCTTAATGGCGTCATCGATTTGGAAATTCTTATCAGGGGCGCAAGGATAGCACAACAGCGATGGGGTGATGCTCCGCCCGGGTTCACCCCTGCGGAGTACGAGGCTATAAAGAACGAGAATTCGAAGAGTTATCTGTCGTTCTTACAAACTAGGGGTCTTCTCGTGACTGTTATGGCCACGGCTTGTGCGGCAATCACACAGCATGTCTTTCTGGGATGGCAGCAATCAACAATCAATTCCAGCTCTCTCTTTTTAAACTGGGATGTTGATTTTGACCTCCAAGATAAGCTTGTGATTGGATTCATCAATGCAGCTCCTTGGCTTTTGGGAAGTCTGATAGGGACATGGTTCAGTGATCCGCTGCAAGAAAGGTTTGGAAGACGCCCAGCGCTCTTCATTTCTGCTGTTTTCTGTGTCGCTCTTGTGATAGGAACGGCTCGTTGCACTACTTGGAAGACACTCCTCGTCTGCCGAGTACTTCTTGGTGTGGGAATCGGATCAAAAGCTTCCATAGCTCCTATATTTACCGCCGAGGCAGCACCCGATCGACATCGAGGTAAAGTCTTGATGATGTGGCAACTTTTCGATGCACTTGGAATATTTCTCGGTTTCTTATGCGCCCTAATTGTAATGGACAGTTGGAGAGTACTGCTCGCGACCGCGATAATCCCCGCCATCGTCCTTTTATTTTTGGTGTTCATGTGTCCCGAGTCGCCGCGATTTCTAGTACAGAGGAATCGATATCCCGAGGCATACAAAAGCCTCCTTGAGCTCCGAGGAACACCCATTCAAGCTGCCCGTGATCTTTACTACATCCATGCACAGCTTCAGACCGAAGCTATCTATGCCTACCAAAAATGGATCAACAAAGGCAATTTCTTCAAGCGGATGATGTACCTCGCCACCGATAAACGAACTCGAAGAGCATGCACGGTTGCTTCGATCGTGATGGCGTCACAACAACTATGTGGTATCAACGCTTTAACATTCTATTCCTCCTCAATTTTGCATTCTGAGCACGTTAACGCGGGGGAACCGAGTGAAGGCTTGTTTCCTAACGCCACGGCCGTCAAATGGTACAATTTCGCCTTTGGCCTAGCCAATTTCCTGTTTACTTTCCCTGCATACATATACATTGACTTGCGTGGACGCCGACCTCTGCTACTTGTCTCGTTCATTGGGATGTTTTTCAGTCTGGTCGCATTTAGCGGCTTCTTCGAAATTGCACACCATGACACTCGGTTAATCCTAGTCGCAGTATTTGCCAGTGTATTATTTGTGTTTTTCTACTCAATTGGTGCTGGACCTATTCCTTTCACACTGAGTGCTGAGGTATTTCCTCTATGCGTGCGCGAGGTGGGAATGAGCTTTAGTGTCATGATCAATTTCCTTGGTCTTGGGCTCTTAGTACTTTTTGTGCCTGAGTTGACCAAGGCATTTGGGCGCCAGGCACATCTTCTCTTCTTCTTCTCAGGCATGAACGTATTGGCACTCATCCTGATTTTCCTGCTGGTCCCCGAAACGAAGGACGTGTCACTAGAGAACATGAACTCGATATTCAACCGCGCAACGAAAGAACAGGTCCTGATTCATGCGCCGCTCTTGGAACCCCTATACCCGAAGACATAA > 809 Pc20g10820 Pc20g10820 hypothetical_protein XP_002563571.1 NA MGVWLKKPEDVPGASWPAIVISSFVAFGGILFGYDTGTISGILAMPHWQDLFSTGYRDATGHLNVTSSQSSAIVSILSAGTFFGALCAAPLGDTIGRRWGLIASSWVFNFGVILQTAATSIPLFLAGRFFAGFGVGLISALIPLYQSETAPKWIRGFIVGSYQLAITIGLLLASVVNNSTHSRNDTGSYRIPIAVQFAWAIVLIIGMLILPETPRYLIKKDHHERATKNLAKLRRLPEDHPAVREEIAEIQANHDYEMSLGQPSYLECFQGNLGKRLLTGCGLQALQQLTGINFIFYYGTQFFKNSGFENEFIISLITNCVNVVSTIPGLYAIDKWGRRPVLLLGAVGMCISQLLVAVLGTTTTGQDAAGNIIVQNAAAQKAAIAFICIFIFFFAASWGPIAWVVTGEIFPLKIRARSLSMTTATNWLVNWAIAYSTPYLVNYGPGNANLQSKIFFVWFGCCFLCISFVYFFIYETKGLSLEQVDELYSEVSTARKSVGWKPSVTFTQIVNQKRGSVGQSQHDERVEEEKA bitunicate_ascomycetes Penicillium_chrysogenum_Wisconsin_54-1255 Penicillium_chrysogenum_Wisconsin_54-1255 XM_002563525 NA van_den_Berg,M.A.,_Albang,R.,_Albermann,K.,_Badger,J.H.,_Daran,J.M.,_Driessen,A.J.,_Garcia-Estrada,C.,_Fedorova,N.D.,_Harris,D.M.,_Heijne,W.H.,_Joardar,V.,_Kiel,J.A.,_Kovalchuk,A.,_Martin,J.F.,_Nierman,W.C.,_Nijland,J.G.,_Pronk,J.T.,_Roubos,J.A.,_van_der_Klei,I.J.,_van_Peij,N.N.,_Veenhuis,M.,_von_Dohren,H.,_Wagner,C.,_Wortman,J._and_Bovenberg,R.A. NA 0:1596 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020080).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2009 Penicillium_chrysogenum_Wisconsin_54-1255_hypothetical_protein_(Pc20g10820)_mRNA,_complete_cds. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_chrysogenum_B6HFX4_PENCW.gb Penicillium 255945606 Nat._Biotechnol._26_(10),_1161-1168_(2008) fungi XM_002563525 NA NA green_and_blue_molds sac_fungi 18820685 1596 NA mRNA NA Wisconsin_54-1255 NA Penicillium_notatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 500485 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium,_Penicillium_chrysogenum_complex Genome_sequencing_and_analysis_of_the_filamentous_fungus_Penicillium_chrysogenum NA XM_002563525.1 ATGGGGGTTTGGCTAAAGAAACCCGAGGACGTACCCGGAGCGTCATGGCCAGCCATTGTTATCTCTAGTTTCGTGGCCTTTGGAGGTATTTTGTTTGGATATGATACAGGGACCATCAGTGGCATCCTTGCTATGCCGCACTGGCAAGACCTTTTCTCAACCGGTTATAGAGATGCTACCGGGCATCTCAACGTTACTTCCAGCCAGTCCTCCGCTATTGTCTCCATTCTATCGGCCGGAACATTCTTTGGTGCTCTCTGTGCAGCTCCGCTGGGAGACACCATAGGCCGCCGATGGGGCTTGATCGCCTCTAGCTGGGTGTTCAACTTCGGCGTGATTTTACAAACAGCTGCTACTTCCATCCCGTTGTTCCTTGCTGGTAGATTCTTTGCTGGGTTTGGTGTGGGCTTAATTTCCGCGCTGATTCCTCTATACCAGTCCGAAACGGCGCCAAAGTGGATCCGTGGTTTCATCGTCGGATCATACCAGCTAGCCATTACTATTGGTCTACTGTTGGCCTCGGTCGTCAACAATTCAACTCACAGTCGGAATGACACCGGTTCCTACCGCATCCCAATCGCCGTCCAATTTGCATGGGCTATCGTGCTGATTATTGGAATGCTTATCCTACCGGAGACCCCACGGTACCTTATCAAAAAAGACCACCACGAGAGGGCCACTAAGAACCTTGCGAAGCTTCGACGTCTACCTGAAGATCATCCCGCGGTCAGAGAAGAGATTGCGGAGATTCAAGCGAATCACGATTATGAAATGAGTCTAGGCCAGCCCAGTTACCTCGAATGCTTTCAAGGGAACTTGGGAAAGCGGCTACTCACTGGTTGCGGTCTTCAAGCCCTACAGCAATTGACCGGCATCAACTTCATCTTTTACTACGGTACGCAGTTCTTCAAAAACTCCGGATTCGAGAACGAGTTCATCATCAGCCTTATCACAAACTGTGTCAACGTCGTTTCAACTATTCCCGGTCTTTACGCCATCGATAAATGGGGCCGCCGGCCCGTTCTCCTACTGGGCGCTGTTGGCATGTGTATCTCCCAACTTCTGGTCGCCGTCCTGGGAACAACGACCACTGGTCAAGATGCCGCTGGCAACATCATTGTGCAAAACGCAGCGGCGCAGAAAGCTGCGATAGCATTCATCTGCATCTTCATCTTTTTCTTCGCTGCATCCTGGGGACCTATTGCTTGGGTCGTCACTGGCGAAATTTTCCCTTTGAAGATTCGTGCTAGGAGCCTGTCAATGACCACCGCTACTAATTGGCTGGTCAACTGGGCCATCGCTTACTCTACCCCGTATCTGGTGAATTATGGCCCGGGTAATGCCAATCTGCAGTCGAAAATCTTCTTCGTCTGGTTCGGGTGCTGCTTCCTTTGCATTTCTTTCGTGTATTTCTTTATCTATGAGACTAAGGGGCTTTCCTTGGAGCAAGTGGATGAGCTTTACTCGGAAGTCAGCACCGCGCGGAAATCAGTTGGTTGGAAGCCATCTGTCACCTTCACGCAGATTGTCAACCAAAAGCGAGGATCGGTCGGCCAGAGTCAGCATGATGAGCGTGTCGAGGAAGAGAAGGCTTAG > 810 Pc22g03020 Pc22g03020 hypothetical_protein XP_002564346.1 NA MKPYFGLRGTNLNIMIGVIAGLDFLLFGYDQGVMGGLLTLNSFITVFPEIDTTKSSSSTSNNATTQGITIASYNLGCFLGAVLCIWVGNYLGRRKTIFAGSIIMVVGATLQACAYSVPHLVVGRIVTGIGNGMNTSTVPTWQSECSKSHHRGKLVMFEGSLIAAGITISYWLDLGFSFLDPSSVAWRFPIAFQNVFALVILVFVLPLPESPRWLILKGRELEALQVLSAILDLDESDPYVHSEFSAIKDAVLAASSVSFRDLLTMDENRHFHRVVLAYVNQMFQQISGINLITYYAATIYENSLGMDGLTSRILAACNGTEYFLASLIPIFIIEKVGRRVLMLIGAAGMSISMAVLAATTSFEGQSKPGIAAAVFLFVFNTFFAFGWLGMTWLYPAEIVPLRIRAPANALATSANWIFNFMVVMITPVAFDSIKYKTYIIFAVINAFIVPVVYFFYPETAYRSLEEMDTIFHKTTSVFNVVSVARNEPHRYGKNGELLINYEDTQEHLRRASYVAEKNNKLGSGTGDVEAGKGTHVEHRKHSSSASS bitunicate_ascomycetes Penicillium_chrysogenum_Wisconsin_54-1255 Penicillium_chrysogenum_Wisconsin_54-1255 XM_002564300 NA van_den_Berg,M.A.,_Albang,R.,_Albermann,K.,_Badger,J.H.,_Daran,J.M.,_Driessen,A.J.,_Garcia-Estrada,C.,_Fedorova,N.D.,_Harris,D.M.,_Heijne,W.H.,_Joardar,V.,_Kiel,J.A.,_Kovalchuk,A.,_Martin,J.F.,_Nierman,W.C.,_Nijland,J.G.,_Pronk,J.T.,_Roubos,J.A.,_van_der_Klei,I.J.,_van_Peij,N.N.,_Veenhuis,M.,_von_Dohren,H.,_Wagner,C.,_Wortman,J._and_Bovenberg,R.A. NA 0:1644 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003020081).COMPLETENESS:_incomplete_on_both_ends. NA 14-AUG-2009 Penicillium_chrysogenum_Wisconsin_54-1255_hypothetical_protein_(Pc22g03020)_mRNA,_complete_cds. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_chrysogenum_B6HW59_PENCW.gb Penicillium 255947157 Nat._Biotechnol._26_(10),_1161-1168_(2008) fungi XM_002564300 NA NA green_and_blue_molds sac_fungi 18820685 1644 NA mRNA NA Wisconsin_54-1255 NA Penicillium_notatum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 500485 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium,_Penicillium_chrysogenum_complex Genome_sequencing_and_analysis_of_the_filamentous_fungus_Penicillium_chrysogenum NA XM_002564300.1 ATGAAGCCATACTTCGGCCTTCGGGGCACGAACCTGAATATCATGATCGGCGTTATTGCTGGTCTTGATTTTCTGCTATTCGGATATGACCAAGGTGTTATGGGAGGTCTGTTGACATTGAACTCATTTATTACGGTCTTCCCTGAAATCGACACCACTAAATCGAGTTCATCGACAAGTAACAATGCGACTACACAGGGAATCACTATCGCCTCTTATAACCTGGGCTGTTTCCTCGGCGCAGTTCTCTGTATCTGGGTTGGAAACTACCTTGGTCGTCGTAAGACGATTTTTGCTGGCTCCATCATCATGGTGGTCGGGGCCACACTGCAGGCCTGTGCTTACTCGGTGCCGCATCTCGTTGTCGGCCGTATTGTCACTGGTATCGGCAACGGCATGAACACCTCTACCGTCCCTACATGGCAGTCTGAATGCTCCAAGTCTCACCACCGTGGAAAACTTGTCATGTTCGAGGGCTCCTTGATTGCTGCTGGAATTACGATCAGTTACTGGCTTGACCTCGGATTCTCCTTCCTTGACCCTAGCTCCGTCGCCTGGCGTTTCCCAATCGCCTTCCAAAACGTCTTCGCGCTGGTCATCCTAGTCTTCGTGCTGCCGCTCCCCGAATCGCCTCGCTGGCTGATTCTCAAGGGCCGCGAACTGGAAGCTTTGCAGGTTCTCTCCGCAATTCTCGACTTGGATGAGAGCGATCCCTACGTCCACTCGGAATTTTCCGCTATCAAGGATGCAGTCCTGGCTGCCTCCAGTGTCAGTTTCCGTGACTTGCTCACTATGGACGAGAACCGCCACTTCCACCGTGTTGTACTTGCCTACGTCAACCAGATGTTCCAGCAGATCTCCGGTATCAACCTGATTACTTACTACGCTGCTACCATTTACGAGAACTCCCTCGGTATGGATGGCCTGACATCGCGCATTCTAGCTGCCTGCAACGGCACTGAATACTTTTTGGCGTCTTTGATCCCCATATTCATTATTGAGAAGGTGGGCCGACGAGTTCTGATGCTGATCGGTGCCGCTGGCATGTCGATCTCCATGGCCGTTTTGGCCGCCACCACTAGCTTTGAGGGCCAGAGCAAGCCTGGTATTGCTGCGGCTGTGTTCTTGTTTGTCTTCAATACATTCTTTGCCTTTGGCTGGCTGGGGATGACCTGGCTCTATCCTGCTGAGATTGTGCCTCTACGTATTCGTGCTCCCGCCAACGCACTCGCGACCTCCGCTAACTGGATCTTCAACTTCATGGTTGTCATGATCACGCCCGTTGCATTTGACTCAATCAAGTATAAGACATACATTATCTTTGCTGTCATCAACGCATTCATCGTTCCTGTCGTTTACTTCTTCTACCCTGAGACTGCCTATCGATCCCTGGAGGAGATGGACACAATCTTCCACAAGACAACCAGCGTATTCAATGTCGTTTCGGTTGCGCGCAACGAGCCCCACCGCTACGGCAAGAACGGCGAGCTTCTCATCAACTACGAGGACACCCAGGAGCACCTGCGCCGCGCTAGCTATGTTGCAGAGAAGAATAACAAGCTGGGTAGTGGAACGGGCGACGTGGAGGCTGGAAAGGGCACCCATGTTGAGCACCGCAAGCACAGCTCGTCTGCCAGTAGCTAA > 811 PMAA_029190 encoded_by_transcript_PMAA_029190A MFS_sugar_transporter,_putative XP_002144617.1 NA MVSLRVPPKYVLASILCSFGGFLFGMDTGIIGPVTVMNSYVASFGAVSSTVHGLIVSAILIPAAISSFLAGKVADILGRPKGISLGAFIFGLGAALEAGAADLAMFIVGRCIEGIGEGLYLGTLVVYICEISPPSKRGPLTSTPQLLITLGLCVGFFICYGSTNIGSSLSWRLPFAILSALSFSFSLAALWLTPSPRWLTLRGRTAEAAATWDILGVSHAEREKIEIVEQIREATEVEETDASCSATRQDAHQGPKKRNSFWELFTHDVRDRTFLAIFMMGMQQLSGIDGVLYYAPLLFQQAGLSSSEASFLASGVSALAIFGVTIPALIWADGWGRRHSTIYGGIGLGVIMFLIGGLYAGTAVHGNSGAGRWVVIVSIYLFAMLYSLSWGVGIKIYAAEIQPQHTRAAATSLAHGSNWSANFLVALTTPILLANSSYGAYFLFGGCSLLTALVCSIFMPETRGRSLEEIEEAFKKTSVSKRLAKAVQKTLGRAAL bitunicate_ascomycetes Penicillium_marneffei_ATCC_18224 Penicillium_marneffei_ATCC_18224 XM_002144581 NA Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W. NA 0:1491 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002196661).COMPLETENESS:_incomplete_on_both_ends. NA 13-NOV-2008 Penicillium_marneffei_ATCC_18224_MFS_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_marneffei_B6Q3L3_PENMQ.gb Penicillium 212528919 Submitted_(03-OCT-2007)_J._Craig_Ventor_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002144581 NA NA green_and_blue_molds sac_fungi NA 1491 NA mRNA NA ATCC_18224 NA Penicillium_marneffei NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441960 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium Direct_Submission NA XM_002144581.1 ATGGTCTCTCTTCGTGTCCCCCCAAAATATGTGCTGGCGAGCATCCTGTGCTCGTTTGGCGGGTTTCTTTTCGGAATGGACACTGGCATCATCGGTCCTGTAACCGTCATGAACAGCTATGTCGCAAGTTTCGGCGCCGTCTCATCGACCGTCCATGGTCTGATCGTCTCCGCCATTCTCATCCCAGCCGCCATTTCATCTTTCCTTGCGGGAAAAGTTGCGGATATTCTCGGCCGACCAAAGGGAATTAGTCTTGGGGCTTTTATTTTTGGCCTGGGCGCCGCTCTTGAGGCGGGGGCTGCCGATTTGGCGATGTTTATTGTTGGGAGGTGTATTGAGGGTATTGGCGAAGGGTTGTACTTGGGTACTTTGGTTGTGTATATATGTGAAATCTCACCCCCCAGTAAAAGAGGGCCACTCACATCCACACCCCAGCTCCTCATTACCCTGGGCCTTTGTGTGGGTTTCTTCATCTGTTACGGTTCCACTAATATTGGCTCCTCTCTCTCATGGAGACTACCATTTGCAATTCTTTCTGCTTTGTCATTTTCGTTCTCTCTGGCTGCGCTATGGCTTACCCCCTCACCACGCTGGCTTACGCTTCGCGGTCGTACCGCAGAAGCAGCTGCTACCTGGGATATTTTAGGTGTCAGCCATGCAGAGCGCGAAAAGATTGAGATTGTGGAGCAGATACGTGAAGCTACCGAAGTGGAGGAAACAGACGCCTCATGCTCTGCAACTCGACAGGATGCTCATCAAGGACCCAAGAAGAGGAATAGCTTCTGGGAACTTTTCACGCATGATGTGCGTGATCGTACATTCCTTGCAATCTTTATGATGGGAATGCAGCAACTCAGTGGCATCGATGGTGTTCTTTACTACGCCCCTCTCCTCTTCCAACAAGCCGGCCTCTCGTCCTCCGAAGCATCATTCCTCGCCTCCGGAGTCTCTGCTCTGGCCATATTTGGCGTAACAATCCCCGCCCTCATCTGGGCCGATGGCTGGGGCCGTCGCCACAGCACCATCTACGGCGGCATCGGCCTCGGTGTTATCATGTTCCTGATCGGCGGCCTCTATGCCGGAACTGCAGTCCACGGCAACTCCGGTGCAGGACGATGGGTGGTCATCGTCTCGATCTACTTATTCGCAATGCTATACTCCCTCTCCTGGGGCGTGGGTATCAAGATCTACGCCGCTGAAATTCAGCCTCAACACACACGCGCAGCGGCTACAAGTTTGGCGCACGGAAGTAACTGGAGTGCAAATTTCTTGGTGGCGTTGACAACACCGATCTTGTTAGCTAATAGCAGCTACGGGGCTTATTTCTTGTTTGGTGGATGCTCGCTTCTGACGGCCCTTGTTTGTTCGATATTTATGCCGGAGACGAGGGGGCGGTCGTTGGAGGAGATTGAGGAGGCGTTTAAGAAGACGTCCGTGTCGAAGAGGTTGGCAAAAGCTGTGCAGAAGACGCTTGGACGAGCTGCCTTGTAA > 812 PMAA_032060 encoded_by_transcript_PMAA_032060A sugar_transporter,_putative XP_002144908.1 NA MSYSKKPVEGATHLETKDEPQIFPGKTDEVYSVALTDAVAKDNQSMLSRNMIKLYLIMVLVTLTSCMNGYDGSVMSSLNAMDPFHTYFNISMEGSSIGAVTALYSVGNIIGCMFASPASDIMGRRFGMSMGCIVIVIGTIIQATTKAIGGFMGGRLLVGLGVTLVTISVPIYLIEIDYPTWRGIGSGLFNVCSWYIGSMTASWTTYSTGFMTSDWSWRIPVIIQAIPAAIAMGLVWLIPESPRWLIMRQRPEETRNILVKYHGNGREDSAIVQLEYNEIHAQVVYARELASGHKWYDYRIIIDSHEVRYRMFLVLLVTFFCQFIGGSISYYMPVVYENLGITSSSKQLLLNALSTAVGFVFGLAGSWTVESFGRRNLFLWGTFLTGLCYLLMNVFASLANGHISNSMGYGFIFMSFLYGAIFSFCWTPLQALYPTEVLRNDIRVKGMAAQGVLSGLGSFIMYATPVALKKTGWKTYTIFLVIHFVEWAFMYFFLVETKGRSLEELDEIFTDPKPVKKSLQKKKVIVEGGIGVMSKAEDC bitunicate_ascomycetes Penicillium_marneffei_ATCC_18224 Penicillium_marneffei_ATCC_18224 XM_002144872 NA Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W. NA 0:1620 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002196661).COMPLETENESS:_incomplete_on_both_ends. NA 13-NOV-2008 Penicillium_marneffei_ATCC_18224_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_marneffei_B6Q574_PENMQ.gb Penicillium 212529501 Submitted_(03-OCT-2007)_J._Craig_Ventor_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002144872 NA NA green_and_blue_molds sac_fungi NA 1620 NA mRNA NA ATCC_18224 NA Penicillium_marneffei NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441960 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium Direct_Submission NA XM_002144872.1 ATGTCGTACTCCAAGAAGCCTGTTGAAGGCGCCACCCATTTGGAGACGAAGGATGAACCGCAAATCTTCCCTGGCAAGACCGACGAGGTCTATTCTGTGGCCTTGACAGATGCCGTTGCCAAGGATAACCAGTCTATGCTAAGTAGGAACATGATAAAGTTATACTTGATCATGGTCCTTGTGACGTTGACAAGTTGCATGAATGGCTACGACGGCTCAGTCATGAGCTCCTTAAACGCCATGGACCCTTTTCATACATATTTCAACATATCTATGGAAGGCTCCAGCATCGGAGCGGTCACTGCCCTATATAGTGTTGGAAACATTATCGGCTGCATGTTTGCCAGTCCAGCCTCAGATATCATGGGCCGTCGATTTGGCATGTCAATGGGATGTATAGTAATCGTGATTGGGACCATAATCCAAGCTACCACCAAGGCTATTGGTGGATTCATGGGCGGACGCTTGTTGGTTGGATTGGGTGTCACTCTTGTCACCATATCCGTTCCTATATACCTCATTGAAATCGACTACCCGACATGGCGAGGTATCGGCAGTGGTCTTTTCAACGTCTGCAGTTGGTATATTGGTTCAATGACAGCGTCTTGGACCACGTATAGTACTGGGTTTATGACGTCGGATTGGAGCTGGCGCATCCCAGTTATTATCCAGGCTATTCCTGCAGCTATAGCAATGGGGCTGGTATGGCTCATACCCGAGAGTCCACGATGGCTGATAATGCGTCAACGGCCAGAAGAGACACGAAATATCTTGGTGAAATACCATGGTAATGGTCGGGAGGACTCTGCCATTGTTCAACTAGAGTATAACGAGATTCATGCCCAAGTGGTGTACGCCCGAGAGCTGGCAAGCGGCCACAAGTGGTACGACTACCGCATTATTATTGACTCCCACGAGGTCCGGTATCGGATGTTTCTCGTACTGCTTGTCACATTCTTCTGTCAGTTCATTGGTGGCTCTATTAGCTACTACATGCCGGTCGTCTATGAAAACTTAGGCATAACTAGCTCTAGTAAACAACTGCTGTTGAATGCGCTGAGCACGGCTGTTGGCTTTGTCTTTGGACTTGCTGGCTCGTGGACTGTTGAAAGCTTTGGTCGTCGTAATCTGTTCCTCTGGGGGACGTTCCTGACCGGGCTTTGCTATCTCTTGATGAACGTTTTCGCATCTCTGGCTAATGGCCATATCAGCAATTCTATGGGATACGGTTTTATTTTCATGAGCTTTCTCTATGGCGCAATCTTTTCTTTCTGCTGGACACCACTACAAGCATTATACCCAACTGAAGTCCTTCGCAACGATATTCGTGTCAAGGGTATGGCCGCTCAAGGTGTGCTCTCCGGCCTCGGCTCGTTCATCATGTACGCTACTCCAGTTGCGCTCAAGAAAACCGGCTGGAAGACTTATACCATTTTCTTGGTTATTCATTTTGTGGAATGGGCTTTCATGTACTTTTTCCTTGTGGAGACCAAAGGCCGTTCTCTCGAGGAACTAGACGAGATCTTTACTGACCCTAAGCCAGTCAAGAAGTCGTTGCAGAAGAAGAAGGTCATTGTGGAAGGTGGAATAGGCGTTATGTCAAAAGCGGAGGATTGTTGA > 813 PMAA_081750 encoded_by_transcript_PMAA_081750A sugar_transporter,_putative XP_002147677.1 NA MLKRSPTGTWMPAWVPGSTTTVAVLLMICSMVQSATGGYDGSMMNGLNILPSYTGYFNLNAVTTGLNTASVFIGSFFGTAISGVFADWLGRRPALLWGSVVALVGIALQTAAQDIAMFVVARIVLGLGLAISSTAGAVYLSETFPSRWRAWGVGVLNTFYYVGALIAAGITLGTGQWNSTWAWRAPSLFQGIFSLACIIVIPFIPESPRWLVHQGHHDLAREVVAQTNSNGNQSDPVALAVYKEILDTLNWEKKQGRTMSPKELIKTPAARKRMLIGMSPGPFSCIAGNIIASYYLGSELDTAGVTDTVAQLKANVVLNAWCLVCALTGTQLAARWGRKPTAILSQVLLIACLFIIGGLSKLYADDPDGASSALVYGDVAVMFLFQGFYSIAWTPLLYLYPPEVMNYSIRANGMALSAFSLNALALVFVYIMPIGLANIGWKMYMVNGSWDIIILVLIAVYWVETKGKTLEEIDAIFEGEKHSSVPDVELLRQGKEHIDVRDVERQIVAEGLATKVE bitunicate_ascomycetes Penicillium_marneffei_ATCC_18224 Penicillium_marneffei_ATCC_18224 XM_002147641 NA Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W. NA 0:1554 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002196663).COMPLETENESS:_incomplete_on_both_ends. NA 13-NOV-2008 Penicillium_marneffei_ATCC_18224_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_marneffei_B6QFD1_PENMQ.gb Penicillium 212535041 Submitted_(03-OCT-2007)_J._Craig_Ventor_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002147641 NA NA green_and_blue_molds sac_fungi NA 1554 NA mRNA NA ATCC_18224 NA Penicillium_marneffei NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441960 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium Direct_Submission NA XM_002147641.1 ATGTTGAAACGATCGCCAACGGGGACATGGATGCCAGCGTGGGTACCAGGGTCTACCACTACCGTCGCAGTACTGCTTATGATATGCTCCATGGTGCAGTCAGCTACTGGAGGTTACGACGGTTCGATGATGAACGGCCTCAACATCCTCCCCTCGTATACCGGCTATTTCAACCTTAATGCCGTAACGACAGGTCTAAATACCGCGTCCGTATTCATTGGGAGCTTCTTTGGCACAGCGATCTCAGGGGTGTTCGCAGATTGGCTGGGTCGTCGTCCAGCACTCCTATGGGGTTCTGTTGTCGCTTTGGTAGGCATCGCTCTTCAGACAGCTGCCCAAGACATTGCTATGTTTGTGGTGGCTCGAATTGTTCTCGGCCTTGGACTCGCGATCTCATCGACGGCCGGAGCTGTCTATCTTTCAGAAACGTTTCCAAGCCGCTGGCGAGCATGGGGGGTCGGTGTGCTTAATACTTTTTATTACGTTGGAGCATTGATAGCCGCCGGTATTACTCTGGGTACTGGCCAATGGAACTCGACCTGGGCATGGCGTGCACCGTCATTGTTCCAGGGCATCTTCTCTCTAGCCTGTATTATAGTGATACCTTTCATACCTGAATCGCCTCGTTGGTTAGTCCACCAGGGCCACCATGACTTGGCGCGAGAAGTGGTCGCCCAAACGAACTCAAATGGTAACCAAAGCGATCCCGTTGCGCTAGCTGTGTACAAAGAAATCCTTGATACTCTGAACTGGGAGAAGAAGCAAGGAAGGACGATGAGCCCGAAAGAGCTCATCAAAACACCTGCTGCACGAAAGAGAATGTTGATTGGGATGTCGCCGGGGCCATTTTCTTGTATCGCAGGCAACATTATTGCGTCTTATTATCTCGGTTCAGAACTCGACACTGCCGGTGTTACGGACACTGTAGCGCAGTTGAAAGCAAACGTGGTTTTGAATGCCTGGTGTTTGGTCTGTGCCTTAACAGGCACCCAGCTTGCAGCAAGATGGGGTCGAAAGCCTACTGCTATATTATCGCAAGTACTGCTGATTGCATGTCTTTTCATCATTGGAGGGCTATCAAAGTTGTATGCAGATGACCCGGACGGCGCTTCAAGTGCGCTGGTCTATGGAGACGTGGCTGTTATGTTTTTGTTTCAGGGGTTCTATTCAATTGCCTGGACACCATTGCTATACCTGTACCCACCGGAGGTAATGAACTATTCGATCCGAGCAAATGGAATGGCATTATCGGCATTCTCATTGAATGCGCTCGCTCTCGTCTTTGTATACATCATGCCAATTGGACTTGCGAATATTGGCTGGAAGATGTACATGGTAAACGGATCATGGGACATTATCATCTTGGTTTTGATCGCCGTCTACTGGGTTGAAACAAAGGGCAAAACACTTGAGGAAATTGACGCCATCTTTGAAGGGGAGAAGCATTCTTCAGTTCCAGATGTCGAATTACTCCGACAGGGCAAGGAACATATTGACGTTAGAGACGTGGAGCGCCAGATTGTAGCGGAAGGGTTGGCGACGAAGGTTGAATGA > 814 PMAA_098640 encoded_by_transcript_PMAA_098640A maltose_permease,_putative XP_002149441.1 NA MASLEINVEKSAASHVETTLGSGAINEAKLASDEEHSQTLWQALSANRKAVAWSMLISLSIIMEGYDLVLIGNFFAYPEFTKKYGVDYGGTTGWQIPARWQSALNMSSTVGTIFGGILNGYLTSVVGYRWVMIISLGLLNALLFIVFFAPSNGVLVAGELLCGLAWGVFAIVGPAYASEVCPTNLRGYLTVYVNLCWAIGQFIAAGVLQGLVDRPDQWSYRIPFALQWIWPLPLMIVCFFAPESPWYLVRHDRLEEAKHSLRRLGGNKTEEQINGQLAMLVHTAKIESSLEVGTSYMDCFKGTDLRRTEICCLAFVGQIMSGSSFAYSPSYFFTTAGMSTDHAYQLNLGGTAIAFLGTLCSWWLITHFGRRTLYVTGQGVLCVTLLIIGIINAASSSTSAIWVEAGFCIFWLLVYSLTVGPIAYAIVAETSSIRLRALTVSLARVSYQIVNIVSQVLEPYFMNPTAWNASGKTGFFWGGTALIIFIWSYFRLPEAKGRTYEELDIIFSRKVSARKFASEEVDAYAARDVVNTEKE bitunicate_ascomycetes Penicillium_marneffei_ATCC_18224 Penicillium_marneffei_ATCC_18224 XM_002149405 NA Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W. NA 0:1608 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002196664).COMPLETENESS:_incomplete_on_both_ends. NA 13-NOV-2008 Penicillium_marneffei_ATCC_18224_maltose_permease,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_marneffei_B6QIS9_PENMQ.gb Penicillium 212538570 Submitted_(03-OCT-2007)_J._Craig_Ventor_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002149405 NA NA green_and_blue_molds sac_fungi NA 1608 NA mRNA NA ATCC_18224 NA Penicillium_marneffei NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441960 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium Direct_Submission NA XM_002149405.1 ATGGCGTCTTTGGAGATCAATGTCGAAAAGTCCGCTGCCAGCCATGTGGAAACTACGTTAGGCAGCGGTGCTATTAACGAAGCCAAACTGGCGTCAGACGAAGAGCATTCACAGACTCTCTGGCAAGCGTTGAGCGCAAATCGAAAGGCGGTTGCATGGTCTATGCTTATCTCACTTTCGATTATCATGGAAGGTTATGACCTCGTGTTGATTGGAAATTTCTTCGCCTATCCAGAGTTCACCAAGAAATATGGTGTCGATTATGGTGGCACCACCGGATGGCAGATTCCGGCTCGTTGGCAATCTGCTTTGAACATGTCCAGTACAGTGGGAACAATCTTTGGTGGCATACTAAACGGTTATCTGACTTCAGTCGTTGGTTATCGTTGGGTCATGATAATTTCCCTCGGCCTCCTCAACGCCTTGCTCTTTATCGTCTTCTTCGCACCATCGAACGGAGTCCTCGTGGCTGGTGAACTTCTCTGTGGTTTAGCCTGGGGTGTTTTTGCGATTGTCGGCCCAGCTTATGCATCTGAAGTATGCCCAACTAATCTTCGAGGTTATCTCACTGTATACGTCAATTTATGCTGGGCAATTGGACAGTTCATTGCTGCTGGCGTTTTGCAAGGACTAGTGGACAGACCAGATCAGTGGTCATACCGTATCCCGTTTGCGTTGCAATGGATTTGGCCGCTACCTCTCATGATTGTCTGCTTCTTCGCCCCAGAATCACCATGGTACTTAGTTCGACATGATCGTCTGGAGGAAGCAAAACACTCATTGCGCCGCCTTGGTGGAAACAAAACAGAGGAACAAATTAATGGTCAACTGGCCATGCTAGTGCATACCGCCAAAATTGAGTCTTCTTTGGAGGTTGGAACCTCATATATGGACTGTTTCAAGGGAACCGACCTCCGCCGCACTGAGATCTGCTGTCTCGCATTCGTTGGCCAGATCATGTCAGGCAGTTCATTCGCCTACTCACCAAGCTACTTCTTCACAACGGCAGGCATGAGTACTGATCATGCGTATCAATTGAACCTAGGTGGCACCGCGATCGCTTTTCTTGGTACCCTCTGTTCCTGGTGGCTGATCACACACTTTGGCCGACGAACTCTATATGTTACTGGACAGGGAGTTCTTTGTGTGACCTTATTAATTATCGGAATAATAAACGCCGCATCCAGCTCAACCAGTGCTATTTGGGTAGAGGCTGGCTTTTGCATTTTCTGGCTACTGGTCTACTCACTAACCGTCGGACCCATCGCCTATGCAATTGTGGCAGAGACATCTTCGATACGCTTACGCGCCTTGACGGTTTCTCTTGCTAGGGTATCGTATCAAATTGTCAACATCGTGAGTCAGGTTCTCGAACCATACTTTATGAACCCAACGGCATGGAATGCTTCCGGCAAGACGGGCTTTTTCTGGGGTGGCACTGCGCTTATTATATTTATCTGGTCGTACTTTCGCTTACCAGAAGCTAAAGGCAGAACTTACGAGGAGCTAGATATTATCTTTTCAAGGAAAGTCAGTGCAAGGAAGTTTGCGTCTGAAGAAGTTGATGCCTATGCTGCGCGAGATGTTGTCAACACCGAGAAGGAGTAG > 815 PMAA_012800 encoded_by_transcript_PMAA_012800A sugar_transporter,_putative XP_002153396.1 NA MAFKNSTLAKYIKNIKTSPRSLIANRTLLTTAALYALAGIPLCWDQGSSATIPSLPGFAKEFGITSATNPSQVSNFVSLVYIGCGVGAALSFFVNDRVGRLWSLRLYSVIWIIGQLIAVGSQGNMKVMYAGRIVAGFGIGPLTVIGPVSLVEIAPSEIRGLLTTWFSVVLLMSLFMAAFTVYGCFVSMAASSLQWQVPFFVPTIIMAFVILASFFVSESPRWLFLKGRDEEAIEALVKIRGLPLDHPRVQSELQDIQKSLAKERAAYGDATSYSLRGLGAILKETFLVPANLRRTQQAFISYALAQLSGANSITTYLVPILSLVGVKGGTSYSLLIAAMYGVVKFFYTVIASFFFVDAIGRRNSLFLGITIQMLSDIYIGVYVKFKQAGPVPTSAGQAALAAIFIHGFGYAVGLLVLPYVFVSELWPNQIRSFGAALTQTFHWLFFFGVNKGIPSLLSSTNNWGAFIFFAGWCFLALIYSFLVVPETAGVDLEKLDALFEGPWWNQYKRPKAMVTESVEIGQKSDSEETRSAEGVAVKQ bitunicate_ascomycetes Penicillium_marneffei_ATCC_18224 Penicillium_marneffei_ATCC_18224 XM_002153360 NA Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W. NA 0:1620 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002196668).COMPLETENESS:_incomplete_on_both_ends. NA 13-NOV-2008 Penicillium_marneffei_ATCC_18224_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_marneffei_B6QVK6_PENMQ.gb Penicillium 212546484 Submitted_(03-OCT-2007)_J._Craig_Ventor_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002153360 NA NA green_and_blue_molds sac_fungi NA 1620 NA mRNA NA ATCC_18224 NA Penicillium_marneffei NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441960 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium Direct_Submission NA XM_002153360.1 ATGGCTTTCAAAAATTCAACCCTCGCCAAGTACATCAAAAACATCAAGACCTCTCCGAGATCATTGATTGCTAATCGCACGCTCTTGACGACGGCGGCACTCTATGCGCTTGCTGGAATTCCTTTGTGTTGGGACCAAGGTTCAAGCGCCACTATACCCTCTCTGCCTGGCTTTGCGAAGGAGTTCGGTATTACATCTGCAACCAACCCGAGTCAGGTTTCCAATTTCGTTTCCCTGGTGTACATAGGATGTGGTGTCGGAGCTGCTCTTTCGTTCTTCGTCAACGACCGGGTGGGCCGTCTATGGTCCCTCCGCCTGTATTCTGTGATCTGGATCATCGGCCAGCTGATTGCTGTCGGCTCTCAAGGAAACATGAAGGTCATGTACGCCGGACGAATTGTGGCCGGATTTGGTATCGGACCCCTTACTGTCATCGGACCTGTGTCGCTCGTGGAGATTGCTCCGTCTGAGATCCGGGGTCTACTCACCACCTGGTTCAGCGTTGTCCTCCTAATGTCCCTTTTCATGGCCGCATTCACAGTCTATGGCTGTTTTGTGAGCATGGCTGCCAGCTCGCTGCAGTGGCAAGTCCCTTTCTTTGTGCCAACCATTATCATGGCCTTTGTAATCCTCGCTAGTTTCTTTGTTAGTGAGAGTCCACGTTGGCTCTTTCTAAAAGGTCGTGATGAAGAAGCTATTGAGGCCCTCGTCAAGATCCGCGGTCTACCTCTGGATCATCCTCGCGTGCAATCTGAATTGCAAGACATCCAGAAATCCCTCGCCAAGGAGCGCGCCGCTTATGGGGATGCCACATCGTATTCCCTCCGGGGTCTCGGAGCTATCCTAAAGGAAACATTCCTCGTCCCAGCGAACCTCCGACGTACTCAGCAAGCCTTTATTTCATACGCTTTAGCTCAGCTATCCGGCGCCAATAGCATCACGACGTATCTGGTCCCTATCCTAAGCTTGGTCGGCGTCAAGGGTGGTACTTCTTACAGTCTCTTGATTGCTGCTATGTATGGTGTTGTCAAATTCTTCTATACTGTGATTGCCAGTTTCTTCTTTGTCGACGCCATTGGTCGTAGAAACAGTCTCTTCCTTGGTATTACGATTCAGATGCTCTCGGATATCTACATTGGCGTCTACGTCAAGTTCAAACAAGCAGGACCCGTTCCTACTTCCGCGGGACAAGCTGCTCTTGCGGCCATCTTCATTCATGGCTTCGGCTATGCTGTAGGCCTTCTAGTATTGCCCTACGTGTTTGTCTCGGAACTGTGGCCAAACCAGATTCGTTCATTCGGCGCAGCCCTGACTCAAACCTTCCACTGGCTGTTCTTCTTCGGTGTCAACAAGGGTATTCCCTCCCTTCTTTCCAGTACCAACAACTGGGGAGCATTCATCTTCTTTGCCGGTTGGTGTTTCTTGGCCCTCATCTACTCCTTCCTGGTGGTCCCCGAGACGGCCGGCGTGGACTTGGAAAAGCTGGACGCTTTGTTTGAGGGCCCCTGGTGGAATCAGTACAAGCGACCCAAGGCCATGGTTACAGAGTCTGTGGAGATAGGTCAGAAGAGTGACAGCGAAGAGACCCGGTCGGCGGAGGGTGTTGCCGTGAAGCAGTGA > 816 PMAA_014780 encoded_by_transcript_PMAA_014780A MFS_sugar_transporter,_putative XP_002153603.1 NA MARFMGFRGHRLNIATILLVVFPAYMCFGYNLAVAGGLLTMPSFIAHFPKMDTVHNSDKFHSNIQGTVVALYTIGGMLGALSTIFVGDILGRRKVIFIASALVIIGSVLMSSSYSLGQFIVARLVQGLGTGATTATVPVWQSEISGSAHRGSHVVTEGLFVCVGIAASLWIDLGFSYINTSSVAWRVPLILQTSLVIFVMIFIFQLPESPRWLLGKGRVEEAREILTILRDVEPGDETVCREIAEVQKSLELVQNASRLDIFKMGEKRNAHRLALGMAGQSFGQLCGINSLTFYATVIFNQRLHMGAINSRILSAGMVTIQVIGAFFAIFTIDRWGRRPLMFASATGMCITMVVLAGTTSATGNQAALIVSVVALYGFNLFYPFGFLGVPFLYSTEVAPPHLRAKISGISNCMTWLFKFVVVEVTPTGFQTIGYKYYIIWAVINFAIVVTVYFFFPETNARSLEEMDEIFMESRNIFDAPRIAKHLPKKMRSPDDSEDDKH bitunicate_ascomycetes Penicillium_marneffei_ATCC_18224 Penicillium_marneffei_ATCC_18224 XM_002153567 211..1716 Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W. NA 0:1506 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002196668).COMPLETENESS:_incomplete_on_the_3_end. NA 13-NOV-2008 Penicillium_marneffei_ATCC_18224_MFS_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Penicillium_marneffei_B6QW90_PENMQ.gb Penicillium 212546898 Submitted_(03-OCT-2007)_J._Craig_Ventor_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002153567 NA NA green_and_blue_molds sac_fungi NA 1506 NA mRNA NA ATCC_18224 NA Penicillium_marneffei NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441960 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_mitosporic_Trichocomaceae,_Penicillium Direct_Submission NA XM_002153567.1 ATGGCACGATTCATGGGCTTCAGAGGCCATCGGCTGAATATAGCCACCATCTTGTTGGTCGTGTTCCCAGCATACATGTGCTTTGGTTATAACCTGGCTGTTGCTGGAGGACTGCTTACGATGCCGTCGTTTATTGCACACTTTCCGAAGATGGACACTGTCCATAACTCGGACAAGTTTCACTCGAATATTCAAGGCACCGTCGTCGCACTATATACCATCGGAGGCATGTTAGGAGCGTTGTCTACCATCTTCGTCGGAGACATCCTAGGTCGACGAAAAGTCATATTCATCGCTTCAGCATTGGTTATTATTGGATCTGTTCTTATGTCATCCTCATATTCGTTGGGTCAATTTATTGTGGCTAGGCTGGTCCAGGGACTCGGAACTGGGGCTACGACTGCGACTGTGCCTGTGTGGCAGTCGGAGATTTCAGGCTCAGCGCATCGTGGATCGCACGTCGTTACTGAGGGTCTGTTCGTGTGTGTGGGAATTGCTGCTTCTCTCTGGATTGATCTGGGATTTTCCTACATCAACACAAGCTCAGTAGCATGGCGCGTGCCATTGATCTTGCAGACCTCGCTTGTAATCTTTGTCATGATTTTCATCTTCCAGCTACCCGAGTCACCTCGCTGGCTGCTGGGTAAAGGCCGTGTGGAGGAAGCACGAGAAATTTTGACCATCCTTCGTGATGTTGAGCCAGGAGATGAAACGGTGTGTCGCGAAATTGCTGAGGTTCAAAAATCGCTCGAACTAGTGCAAAACGCCAGCCGACTAGACATTTTTAAAATGGGAGAGAAGCGCAATGCGCACCGACTGGCGCTTGGAATGGCCGGCCAGTCATTTGGACAGCTCTGCGGTATCAATTCTCTCACATTCTATGCTACCGTCATTTTCAACCAGCGCCTGCATATGGGAGCCATAAACTCCCGCATTCTGAGTGCTGGCATGGTTACCATCCAGGTTATTGGAGCTTTCTTCGCCATCTTCACTATTGACCGCTGGGGCCGTCGTCCTCTTATGTTTGCTAGTGCTACTGGTATGTGTATCACCATGGTTGTGCTTGCTGGCACAACCTCGGCAACCGGCAATCAAGCGGCTCTTATTGTTTCCGTTGTTGCTCTCTATGGCTTCAACCTGTTCTACCCCTTTGGCTTTCTCGGGGTGCCCTTCCTCTATTCGACAGAGGTAGCGCCTCCACATCTACGCGCGAAGATCAGTGGTATATCCAACTGCATGACCTGGTTGTTCAAATTTGTCGTTGTGGAGGTCACTCCTACTGGTTTCCAGACGATCGGATATAAATATTATATCATTTGGGCAGTTATCAACTTTGCTATCGTGGTGACAGTTTATTTCTTCTTCCCCGAGACTAATGCAAGGTCATTAGAGGAGATGGATGAGATATTTATGGAGTCGCGCAATATTTTCGATGCTCCGAGAATTGCGAAGCACTTGCCCAAGAAGATGCGTTCTCCAGATGACTCTGAAGACGATAAGCACTAG > 817 SNOG_12877 gene_prediction_version_2 hypothetical_protein XP_001803093.1 NA MASIDNQSTDKKDSWAGERISEVDSGSTGQDNDEKSTLWQNIKKYRKVVWITIALTSAILLYGYDNVVVGTVSAMPVFQKDFGIFYEGQWILPSTWLALWNVASPIGAMAGSLLGGWFNDRVGRKKALAISLVAGFCLQCFADLGWLSFLAITLLGQLTGALVIYGSLNRGKGYAVVFGSQWPFSFIPIVVAFFIPESPAWYVRKRYMDKAHKAQARLDPPGTDTASVVAKILATIEHEELSANATFMECFHKRNFRRTFIVIWANSLTSIFGLQLLAKASYFLQLVGMKPGTSIIFLILGIVLGLIANIISIWVMSRVGRRKCVLSTMAFAILLWTSMGVANSTKITPAVTWYTAACMMITIVVCGIGVWPASYAIAAETSSLQLRAKTQGIGWAVSALTSTVSGLCLPYVFNPDEGNLRGKTGYTYAASCVVGVVVSYFIIPEMKGRTVNEIDRMFEEGLSAREFKSWTGEEELRARSPRTEPWV bitunicate_ascomycetes Phaeosphaeria_nodorum_SN15 Phaeosphaeria_nodorum_SN15 XM_001803041 NA Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Oleary,S.,_Oliver,R.O._and_Solomon,P. NA 0:1464 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884572).COMPLETENESS:_incomplete_on_both_ends. NA 02-APR-2008 Phaeosphaeria_nodorum_SN15_hypothetical_protein_partial_mRNA. NA Phaeosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Phaeosphaeria_nodorum_Q0U5T7_PHANO.gb Phaeosphaeria 169619360 Unpublished fungi XM_001803041 NA NA Pleosporales sac_fungi NA 1464 NA mRNA NA NA NA Stagonospora_nodorum NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 321614 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Phaeosphaeriaceae,_Phaeosphaeria Annotation_of_the_Phaeosphaeria_nodorum_SN15_genome NA XM_001803041.1 ATGGCGAGCATCGACAATCAAAGCACCGATAAGAAGGATAGCTGGGCTGGAGAGCGCATCTCAGAGGTGGACAGTGGGTCGACTGGGCAGGACAATGACGAGAAGAGCACGCTTTGGCAAAACATCAAGAAATACCGAAAAGTCGTCTGGATCACCATTGCGCTCACCTCTGCGATTCTCCTCTATGGGTACGACAACGTTGTTGTTGGTACCGTGTCGGCCATGCCTGTTTTCCAAAAGGACTTTGGTATCTTTTACGAAGGCCAATGGATTCTCCCCTCGACATGGCTCGCTCTATGGAACGTTGCATCTCCCATAGGTGCTATGGCTGGCTCTTTACTCGGTGGATGGTTTAACGACCGGGTCGGGCGAAAGAAGGCTCTCGCTATCTCACTAGTCGCCGGATTCTGCCTCCAGTGCTTCGCGGATCTGGGATGGCTCTCTTTCCTTGCCATTACATTGCTGGGTCAATTGACTGGCGCGCTGGTCATCTACGGATCTCTCAACCGCGGTAAAGGCTATGCTGTCGTCTTCGGCTCTCAATGGCCATTCTCGTTCATTCCCATCGTCGTGGCTTTCTTCATCCCCGAATCACCCGCGTGGTACGTTCGCAAACGCTACATGGACAAGGCACACAAGGCGCAAGCTCGTTTGGATCCCCCAGGCACCGACACGGCCAGTGTTGTCGCCAAGATTCTTGCCACCATCGAACACGAGGAACTCTCAGCCAACGCGACGTTCATGGAGTGCTTCCACAAGCGAAACTTTCGCCGCACTTTCATCGTCATATGGGCCAACTCTTTAACATCCATCTTCGGACTGCAGCTTCTGGCTAAGGCGTCTTACTTCCTCCAGCTTGTCGGCATGAAACCCGGAACATCAATTATCTTCCTCATCCTCGGTATCGTGCTCGGCCTGATCGCAAACATCATTTCAATCTGGGTCATGTCGCGCGTTGGCCGCCGGAAGTGCGTTCTTAGCACAATGGCTTTTGCAATCCTCCTCTGGACCTCCATGGGCGTTGCAAATAGCACCAAAATCACGCCAGCAGTGACATGGTACACAGCCGCCTGCATGATGATCACCATCGTCGTCTGTGGCATCGGCGTCTGGCCCGCCTCCTACGCCATCGCCGCCGAAACCTCTTCCCTGCAACTCCGCGCTAAAACTCAGGGTATCGGCTGGGCAGTATCTGCGCTCACGTCCACCGTGTCCGGTCTCTGCTTGCCATACGTGTTCAATCCTGACGAGGGGAATCTGCGAGGCAAGACCGGATATACGTATGCGGCGAGCTGTGTAGTTGGTGTGGTGGTAAGTTACTTCATCATTCCAGAGATGAAGGGCAGGACTGTCAATGAGATTGATAGGATGTTTGAGGAGGGGTTAAGTGCGCGGGAGTTCAAGAGTTGGACGGGAGAGGAGGAGCTGAGAGCGAGGAGTCCGAGGACGGAACCTTGGGTTTGA > 818 SNOG_10647 gene_prediction_version_2 hypothetical_protein XP_001800910.1 NA MDKPSSVVQHEEVLRPTHGKSMADVQGAIADNETEHRLTLGDIWKNHRSLIWCSFFWAMCAIGWGFDAQINGAMISVPAFRRDFGYIFNGEPVLPANWQTAFNVVSSVGQFFGGFMCGWTADKFGRKGALAAGLVLCSGGIFGEIFSTTRVAFLVSKLILGFGLGYYLTIGPMACSEIAPVALRGISTAGINLGIALGQLLSNAVVKGFGEWTTRWAYAAPFAIQMFFVAFLSAGFYFVPESPWYLVRQGRDEQALKSLQSLWGNSIDVNEKLASLKLTIQEEQALKESSFLDCFKGVNLRRSLISTGAFACQHFVGIIFVLGYSTYFFQLAGLATSRSFDLGVGVTACALAGNIASWFIVDSFGRRKIFVSGMAALTLLLLLIGIMDFVPSSGAKWVQSSCTVIYAFVYSMSLGAMAFVLLGEVSSMGLRAHTTALATATQSSLGVIFNIVIPYLMNPDEADLRGKVGFVFGGLAAIATVGAWVYIPELKGRTTIEIDLMFSRQVPSRKMGTYDIDAEGGI bitunicate_ascomycetes Phaeosphaeria_nodorum_SN15 Phaeosphaeria_nodorum_SN15 XM_001800858 NA Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Oleary,S.,_Oliver,R.O._and_Solomon,P. NA 0:1569 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884565).COMPLETENESS:_incomplete_on_both_ends. NA 02-APR-2008 Phaeosphaeria_nodorum_SN15_hypothetical_protein_partial_mRNA. NA Phaeosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Phaeosphaeria_nodorum_Q0UC67_PHANO.gb Phaeosphaeria 169614987 Unpublished fungi XM_001800858 NA NA Pleosporales sac_fungi NA 1569 NA mRNA NA NA NA Stagonospora_nodorum NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 321614 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Phaeosphaeriaceae,_Phaeosphaeria Annotation_of_the_Phaeosphaeria_nodorum_SN15_genome NA XM_001800858.1 ATGGATAAACCATCTTCAGTCGTCCAGCATGAAGAAGTTCTGCGGCCAACTCATGGCAAGAGCATGGCAGACGTCCAGGGTGCAATTGCCGACAACGAGACTGAGCATCGTCTTACTCTAGGCGACATTTGGAAAAACCACAGATCGTTGATCTGGTGTTCGTTCTTCTGGGCTATGTGTGCGATTGGTTGGGGTTTCGACGCACAAATCAACGGCGCCATGATATCAGTCCCTGCCTTTCGTCGTGACTTTGGCTACATCTTCAATGGCGAACCAGTGCTGCCTGCAAACTGGCAGACAGCATTCAATGTGGTCTCCTCAGTAGGGCAATTTTTCGGAGGTTTCATGTGCGGTTGGACTGCGGACAAGTTTGGCCGCAAGGGCGCTTTAGCTGCAGGTCTCGTGCTCTGCTCTGGTGGCATCTTCGGCGAAATCTTTTCTACGACCAGAGTTGCCTTCCTCGTGTCAAAGCTCATTCTCGGCTTCGGTCTTGGTTACTATCTAACGATTGGACCGATGGCCTGCAGTGAAATCGCGCCTGTCGCTCTTCGCGGTATCTCGACTGCGGGTATCAACCTGGGTATAGCTCTTGGTCAACTCCTATCAAACGCTGTTGTCAAGGGCTTTGGCGAGTGGACCACTCGATGGGCATATGCCGCGCCTTTTGCAATCCAAATGTTCTTCGTTGCTTTCCTCAGCGCAGGATTTTATTTCGTCCCGGAGTCACCCTGGTATCTGGTCCGTCAAGGAAGAGATGAGCAGGCTCTGAAATCTTTGCAATCGCTTTGGGGTAATAGTATTGATGTCAACGAGAAGCTCGCGAGCTTGAAACTCACCATTCAGGAGGAGCAAGCACTCAAAGAGTCCTCGTTCCTCGACTGTTTCAAGGGCGTCAACCTGAGGCGAAGCTTGATTTCCACCGGAGCCTTCGCCTGCCAGCATTTTGTCGGCATTATCTTCGTTCTCGGCTATTCTACATACTTTTTCCAGCTTGCTGGATTGGCGACCAGTCGTTCCTTCGACCTCGGAGTTGGCGTTACGGCCTGTGCACTTGCGGGAAATATCGCCTCATGGTTCATCGTTGACTCATTTGGACGCCGCAAGATTTTCGTCAGTGGTATGGCCGCCTTAACCCTCCTCTTGCTCTTGATTGGCATCATGGATTTTGTACCATCGAGCGGTGCGAAATGGGTACAGTCCTCGTGCACAGTCATCTATGCGTTTGTGTACTCCATGTCTCTCGGAGCGATGGCCTTCGTCTTGCTCGGAGAGGTGTCGAGCATGGGTCTTCGGGCACACACCACGGCGCTCGCAACTGCTACCCAATCGTCGCTCGGTGTCATCTTTAACATTGTCATCCCATACCTCATGAACCCAGACGAAGCGGATCTGAGAGGCAAGGTTGGGTTCGTATTTGGTGGGCTCGCAGCTATTGCAACTGTAGGCGCCTGGGTATATATCCCAGAGCTGAAGGGTCGCACAACGATCGAGATCGATCTTATGTTCTCGAGACAAGTGCCAAGCAGGAAGATGGGCACGTATGACATTGATGCGGAAGGCGGTATATGA > 819 SNOG_10077 gene_prediction_version_2 hypothetical_protein XP_001800359.1 NA MASDLQIGTRLGGPQKKGLYKELRQNPYLLGLSAFASLGGFLFGYDQGVVSGVLTMESFAAAFPRISYDSSFKGWFVSSLLLAAWLGSLVNGPVADRFGRKGSIMIAVVIFTIGSALQAGAINIEMAFAGRAIAGFAVGMLTMIVPMYMSEVSTAGIRGTLVVLQQLSITLGILVSYWLEYGTQYIGGPRCAPDIPYTGGTMDEPAFDPRTDVGPNGCTGQSDASWRVPFALQIFPGLVLGIGMIFFPESPRYYCMRDNDEAGVRALAKVRQTRPDDELLQKEYLAIKAEVIFEQQYAREKFPGKSGVSLYLAGYSTLFSNWPSFRQQAIIYYAPTIFGQLGLSGKTTGLLATGVYGIVNTLSTLPALFLIDKIGRRPLLLSGAAGTFISLCIVGGVIGGYGNTLKDHPAAGWTGIAFVYIYDVNFSYSWAPIGWVLPSEIYNIGNRSKAMSLTTSSTWMCNFIIGLVTPDMLETIGYGTYLFFAAFALIAFFFTWFLIPETKGKTLEEMDAVFKDTTAHEEKTRLYNIAQTLGLEEAENAAFDEKPHKALQTEMTGP bitunicate_ascomycetes Phaeosphaeria_nodorum_SN15 Phaeosphaeria_nodorum_SN15 XM_001800307 NA Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Oleary,S.,_Oliver,R.O._and_Solomon,P. NA 0:1677 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884564).COMPLETENESS:_incomplete_on_both_ends. NA 02-APR-2008 Phaeosphaeria_nodorum_SN15_hypothetical_protein_partial_mRNA. NA Phaeosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Phaeosphaeria_nodorum_Q0UDT7_PHANO.gb Phaeosphaeria 169613884 Unpublished fungi XM_001800307 NA NA Pleosporales sac_fungi NA 1677 NA mRNA NA NA NA Stagonospora_nodorum NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 321614 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Phaeosphaeriaceae,_Phaeosphaeria Annotation_of_the_Phaeosphaeria_nodorum_SN15_genome NA XM_001800307.1 ATGGCTTCTGACCTTCAGATCGGCACTCGCTTGGGCGGTCCACAGAAGAAGGGTTTGTACAAGGAGTTGCGCCAGAATCCGTACCTTCTTGGTCTATCAGCTTTTGCCTCGCTTGGCGGCTTTCTCTTTGGCTATGACCAAGGTGTGGTTTCCGGAGTCTTGACCATGGAGAGTTTTGCAGCAGCCTTCCCCCGCATTTCATACGACAGCTCATTCAAGGGATGGTTCGTCTCATCTCTGCTATTGGCAGCATGGTTGGGATCTCTCGTGAATGGCCCCGTTGCAGATCGCTTTGGTCGGAAAGGTTCCATCATGATTGCAGTCGTCATCTTCACCATCGGTTCCGCGCTCCAAGCTGGTGCAATTAACATTGAAATGGCCTTTGCTGGACGCGCTATTGCTGGCTTTGCTGTGGGAATGTTAACGATGATTGTTCCGATGTACATGAGCGAAGTTTCCACCGCCGGTATCCGAGGAACATTAGTCGTTCTACAGCAGCTTTCGATCACTCTCGGTATCCTTGTGTCATACTGGCTCGAATATGGCACACAATATATAGGCGGTCCACGATGCGCACCAGATATTCCTTATACTGGTGGGACCATGGACGAACCAGCTTTCGACCCACGCACAGATGTCGGTCCGAACGGCTGCACTGGGCAGTCTGATGCATCATGGCGTGTCCCGTTCGCCCTGCAAATCTTCCCCGGTCTCGTGCTTGGGATTGGCATGATCTTCTTTCCAGAGAGCCCTAGGTACTACTGCATGCGCGATAATGACGAAGCCGGCGTTCGAGCTCTTGCCAAAGTTCGTCAAACCAGACCCGATGACGAGCTGCTCCAGAAGGAATACCTTGCTATCAAGGCGGAGGTCATTTTTGAACAGCAGTATGCACGCGAAAAGTTCCCCGGCAAATCTGGCGTGTCTCTCTACCTGGCTGGATACTCAACCCTCTTCTCGAATTGGCCATCATTTAGACAACAGGCAATTATCTATTATGCCCCCACCATTTTCGGCCAGCTCGGCTTGTCCGGCAAGACGACTGGTTTGCTAGCTACTGGAGTGTATGGAATTGTCAATACTCTCTCCACTCTTCCAGCACTGTTCTTGATTGACAAGATTGGTCGCCGTCCACTCCTCTTGTCTGGTGCTGCGGGAACCTTCATCTCCCTCTGCATAGTGGGTGGGGTCATTGGAGGCTACGGCAACACTCTCAAGGACCACCCCGCAGCTGGCTGGACAGGAATCGCCTTTGTTTACATCTACGATGTCAACTTCTCGTACTCTTGGGCTCCCATCGGATGGGTACTACCGTCGGAGATTTACAACATCGGAAACCGTTCCAAGGCCATGTCGCTGACCACGTCGTCGACATGGATGTGCAACTTCATAATTGGGCTCGTCACACCTGACATGCTTGAGACTATCGGCTACGGAACGTACCTTTTCTTTGCCGCTTTTGCGCTTATCGCATTCTTCTTTACCTGGTTCCTGATACCTGAGACGAAGGGGAAAACACTAGAAGAGATGGATGCTGTGTTCAAAGACACTACAGCTCACGAAGAAAAGACGAGACTTTACAACATTGCTCAAACCCTCGGCCTCGAGGAAGCAGAAAACGCCGCTTTCGACGAGAAGCCACACAAAGCTCTGCAAACAGAGATGACGGGGCCGTAG > 820 SNOG_09766 gene_prediction_version_2 hypothetical_protein XP_001800053.1 NA MAIFANLPSPPGYITASLLCSLGGFLFGHDTGIIGPVTVMPSFTSYTGNPSPTIHGLIVSSILIPAAISSFFAGKLADRLGRTRGIAIGSGIFGLGAAVEAASVHVGMFVAGRVLAGVGEGMFLGTVVVYICEISPARHRGALATGPQLLITTGLMVGFFTCYGTTNMESSFSWRLPFILLAGYSFVFSAVTLFYLPPSPRWLTVNGKAEEAAAAWEKLGVPTADQEKILEQLDDSAALVEPASIGVAMENLQRNTTNVSRRSQKKAQIMDVFSSQSRPRLFLAMFLMGMQQLSGIDGVLYYAPILFQQAGLASNEAKFLASGVSALVIFAVTIPATMWADKWGRRTNTVFGGLGMATVMFLIGSLYAGNAVHASSGAGRWVVIVCIYLFAAIFSISWAVGIKIYSSEIQPQHTRATATSMSHGANWVANFVVALVTPTLLAKSAYGAYFLFGGCTFLTAIMCILYMPETRGKSLNEIEQAFQKSRQKGRAGGVKGLVSSLRSRMLHREIAAV bitunicate_ascomycetes Phaeosphaeria_nodorum_SN15 Phaeosphaeria_nodorum_SN15 XM_001800001 NA Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Oleary,S.,_Oliver,R.O._and_Solomon,P. NA 0:1542 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884563).COMPLETENESS:_incomplete_on_both_ends. NA 02-APR-2008 Phaeosphaeria_nodorum_SN15_hypothetical_protein_partial_mRNA. NA Phaeosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Phaeosphaeria_nodorum_Q0UEP8_PHANO.gb Phaeosphaeria 169613271 Unpublished fungi XM_001800001 NA NA Pleosporales sac_fungi NA 1542 NA mRNA NA NA NA Stagonospora_nodorum NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 321614 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Phaeosphaeriaceae,_Phaeosphaeria Annotation_of_the_Phaeosphaeria_nodorum_SN15_genome NA XM_001800001.1 ATGGCCATCTTCGCCAACCTCCCCTCACCCCCAGGCTACATAACTGCCTCCCTCCTCTGCTCCCTCGGCGGCTTCCTCTTCGGCCACGACACGGGCATCATCGGCCCCGTAACCGTGATGCCGTCCTTCACATCCTACACCGGCAACCCATCGCCGACCATCCACGGCCTCATCGTCTCCTCCATCCTCATCCCCGCCGCCATCTCCTCCTTCTTCGCTGGCAAACTAGCGGATCGGTTGGGGCGCACGCGCGGCATTGCGATCGGATCCGGGATTTTTGGCCTGGGGGCTGCAGTGGAGGCGGCGAGTGTGCATGTGGGCATGTTTGTTGCGGGGCGGGTACTCGCGGGTGTGGGGGAGGGGATGTTTCTTGGGACGGTGGTAGTGTACATCTGTGAGATATCGCCAGCCCGGCATCGCGGTGCGCTCGCAACTGGTCCACAGCTCCTCATCACGACTGGACTTATGGTTGGATTTTTCACGTGCTATGGCACGACGAATATGGAGTCGTCGTTTTCGTGGCGCTTGCCGTTCATTCTGCTGGCGGGTTATTCGTTTGTGTTTTCAGCGGTGACGCTGTTTTACCTGCCTCCTTCGCCGCGCTGGCTTACTGTTAATGGAAAGGCTGAAGAGGCGGCTGCGGCGTGGGAAAAGCTAGGTGTACCTACGGCAGACCAGGAGAAGATCCTTGAGCAGCTGGACGATTCTGCCGCGCTCGTTGAGCCTGCAAGTATTGGGGTTGCGATGGAGAATTTGCAACGCAACACTACCAATGTGTCTAGGCGAAGCCAGAAGAAGGCTCAGATCATGGATGTGTTCTCGTCCCAGTCGCGACCAAGGCTGTTCCTTGCCATGTTCCTCATGGGCATGCAGCAGCTGAGCGGGATCGATGGCGTTTTATACTACGCTCCGATTCTCTTCCAACAAGCCGGCCTCGCCTCCAACGAAGCCAAATTCCTCGCTTCCGGCGTCTCAGCACTTGTCATTTTCGCCGTGACTATACCAGCAACTATGTGGGCCGACAAATGGGGCCGTCGCACCAACACCGTCTTCGGCGGTCTGGGCATGGCGACTGTCATGTTTCTTATCGGGAGTCTGTATGCCGGGAACGCAGTCCATGCATCCTCAGGAGCAGGGCGCTGGGTAGTCATTGTATGCATTTACCTCTTCGCGGCCATCTTCAGCATCTCCTGGGCCGTGGGTATTAAGATCTATTCGTCGGAGATACAGCCGCAACACACGCGCGCTACAGCCACGAGCATGTCACACGGCGCGAATTGGGTTGCAAATTTCGTGGTTGCGCTTGTAACACCAACGTTATTGGCGAAGAGCGCGTATGGTGCATATTTCTTGTTCGGCGGCTGCACGTTTTTGACGGCAATCATGTGCATATTATATATGCCCGAGACAAGAGGAAAGAGCTTGAACGAGATTGAGCAGGCGTTTCAGAAGAGTCGGCAAAAGGGGCGTGCAGGTGGGGTCAAAGGACTTGTTTCGTCTCTCCGAAGCAGGATGTTGCACCGGGAAATAGCTGCTGTGTAA > 821 SNOG_07407 gene_prediction_version_2 hypothetical_protein XP_001797741.1 NA MDEKDTKDVMPPSTEFKESAPTQPKTEIELAPPKDYEGPKANTEKMEDARGWESENLIQNLDKQLEQEGYKKGFFDLEFKNPKHFTWMLVAFASMGGLLSGLDQSLISGANLTLPKDLGLTDQQNSLVNSGMPLGAVAGAFLISPCNEYFGRRWAIIISCILYTIGGALEAGSVNYGMIVAARVILGAGVGLEGGTVPVYVAETVESRLRGNLVSLYQFNIALGEVLGYAVAAMFITVDGSWRYILGSSLVFSTIMGVGILFMPESPRYLMHKGKPLEAYKVWRRIRGVATHEAREEFFVMKISTEEEQAEVAAGRTNRFPWMDFFTKPRARRAIIYANIMIFLGQFTGINAIMYYMSVLMSQVGFDTYDATYMSLVGGGALLLGTIPAIFLMEQCGRRFWAIAMLPGFFIGLVLVGISYQLNTLSAQLGVYLTGLVLYELFFGSYAALTWVIPSEVYPTYLRSYGMTTSTGWLFLSSFIVTYNFTGMQNAMTRTGLSLGFYGGIAVLGWFYQIFFMPETKDKTLEEIDQLFQKPTRQLVRENAKNAMEVTSDLMHLRFRKVFIENNQRRWEA bitunicate_ascomycetes Phaeosphaeria_nodorum_SN15 Phaeosphaeria_nodorum_SN15 XM_001797689 NA Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Oleary,S.,_Oliver,R.O._and_Solomon,P. NA 0:1722 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884559).COMPLETENESS:_incomplete_on_both_ends. NA 02-APR-2008 Phaeosphaeria_nodorum_SN15_hypothetical_protein_partial_mRNA. NA Phaeosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Phaeosphaeria_nodorum_Q0ULF7_PHANO.gb Phaeosphaeria 169608643 Unpublished fungi XM_001797689 NA NA Pleosporales sac_fungi NA 1722 NA mRNA NA NA NA Stagonospora_nodorum NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 321614 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Phaeosphaeriaceae,_Phaeosphaeria Annotation_of_the_Phaeosphaeria_nodorum_SN15_genome NA XM_001797689.1 ATGGACGAGAAAGATACCAAGGACGTGATGCCGCCATCAACAGAGTTCAAGGAATCTGCTCCGACACAGCCCAAGACGGAGATTGAACTCGCGCCACCAAAGGACTATGAAGGCCCCAAGGCGAATACCGAGAAGATGGAAGATGCACGCGGTTGGGAGTCGGAGAATTTGATACAGAATCTGGACAAGCAGCTCGAGCAGGAAGGATACAAGAAGGGCTTCTTCGATCTGGAGTTCAAAAACCCCAAGCACTTCACATGGATGCTCGTCGCGTTTGCGTCTATGGGCGGATTGCTCTCCGGACTGGACCAGTCTCTGATCTCCGGTGCCAACTTGACGCTGCCCAAGGACCTCGGTCTTACAGATCAGCAGAACTCGCTTGTCAACTCTGGCATGCCGCTTGGAGCTGTCGCGGGAGCTTTTCTCATCTCCCCATGTAACGAGTACTTCGGCCGTCGCTGGGCCATCATCATCTCCTGCATCCTATACACCATCGGTGGCGCGCTCGAAGCCGGCAGTGTCAACTACGGCATGATAGTCGCCGCGCGAGTCATCCTGGGTGCCGGCGTCGGTCTCGAGGGCGGTACCGTGCCAGTCTACGTCGCCGAGACAGTCGAGTCCAGACTCCGCGGTAACTTGGTCTCGCTATACCAGTTCAACATTGCGCTCGGCGAAGTCCTCGGATATGCTGTTGCAGCCATGTTCATCACTGTCGACGGCAGCTGGCGTTACATTCTCGGCAGTTCGCTCGTGTTCTCTACGATCATGGGCGTTGGTATTCTGTTCATGCCTGAGAGTCCTCGGTACCTTATGCACAAGGGCAAGCCGCTCGAGGCATACAAGGTCTGGCGCCGTATCCGTGGTGTTGCTACGCATGAGGCTCGCGAAGAGTTCTTTGTCATGAAGATCAGCACGGAAGAGGAGCAGGCGGAGGTTGCAGCTGGTCGCACCAATCGTTTTCCATGGATGGATTTCTTCACAAAGCCTCGGGCTCGTCGGGCGATTATTTACGCCAACATAATGATTTTCCTGGGCCAGTTTACTGGTATCAACGCTATCATGTACTACATGTCAGTCTTGATGTCACAAGTCGGATTCGACACGTACGACGCAACCTACATGTCGCTCGTTGGCGGCGGCGCTCTCCTCCTCGGCACCATCCCCGCAATTTTCCTCATGGAACAATGCGGCCGTCGCTTCTGGGCCATTGCCATGTTACCTGGCTTCTTCATCGGCCTCGTTCTCGTCGGCATAAGCTACCAGCTTAACACGCTGAGCGCCCAGCTCGGCGTCTACCTCACCGGCCTGGTCCTCTACGAGCTCTTCTTCGGTTCCTACGCCGCACTCACCTGGGTCATTCCCTCCGAAGTCTACCCCACCTACCTGCGCTCCTACGGCATGACCACCTCGACCGGGTGGCTGTTCCTGTCCTCCTTCATCGTCACGTACAACTTCACGGGCATGCAAAACGCAATGACGCGCACCGGTCTGTCGCTCGGTTTCTACGGCGGCATCGCGGTGCTGGGATGGTTTTACCAGATCTTCTTCATGCCGGAGACCAAGGACAAGACGCTCGAGGAGATTGATCAGCTGTTTCAGAAGCCCACGAGGCAGTTGGTTAGGGAGAATGCGAAGAATGCGATGGAGGTTACGAGTGATTTGATGCATTTGCGGTTCAGGAAGGTGTTTATTGAGAACAATCAAAGGAGGTGGGAGGCGTAG > 822 SNOG_05265 gene_prediction_version_2 hypothetical_protein XP_001795672.1 NA MTDAAAEPLIRNDPNEEDGDADEDVEVDESALAAPGLFIWGLTMCAGVSGLLFGYESFFALLASPLTGILADALGRRSIILIADVLFVAGALIQAFSTTVWGMILGRSVVGAAVGSASFVVPMYISELAPSAFRGRLVTVSSLFITGGQVVAYIIGWLFSTLPHGWRWMVGLGALPAAVQFCMLFVLPETPRYLVKAGRKEQARGVLRKVYGLGDGMEKMVNGVLRKVEKEILEEEDAAGLRNVPQTSKTGWSSKIARVQDNFSQLVNVGGNRRALIIACMLQGFQQLCGFNSLMYFSATIFRLVGFHSPTLTSLSIALTNFLFTLLAFHFIDRVGRRRILLFSIPVMIAGLLLCSIAFLHVDLTGEAGSSTLSNRTWPLVILIAMVTYVAGYATGLGNVPWQQSELFPLQVRSLGSALATATNWGSNTLIGVTFLPMMEFFTPTGTFGLYAGVCGVAWWTVWKIYPETAGLGLEDVGGLLRNGWGVEESVRGFRERRKR bitunicate_ascomycetes Phaeosphaeria_nodorum_SN15 Phaeosphaeria_nodorum_SN15 XM_001795620 NA Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Oleary,S.,_Oliver,R.O._and_Solomon,P. NA 0:1503 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884555).COMPLETENESS:_incomplete_on_both_ends. NA 02-APR-2008 Phaeosphaeria_nodorum_SN15_hypothetical_protein_partial_mRNA. NA Phaeosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Phaeosphaeria_nodorum_Q0USJ9_PHANO.gb Phaeosphaeria 169604501 Unpublished fungi XM_001795620 NA NA Pleosporales sac_fungi NA 1503 NA mRNA NA NA NA Stagonospora_nodorum NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 321614 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Phaeosphaeriaceae,_Phaeosphaeria Annotation_of_the_Phaeosphaeria_nodorum_SN15_genome NA XM_001795620.1 ATGACTGACGCCGCTGCCGAACCGCTCATCCGCAACGACCCGAATGAAGAGGACGGCGATGCAGACGAGGATGTGGAAGTAGATGAGAGCGCGCTGGCGGCGCCAGGATTGTTCATATGGGGGTTGACAATGTGTGCGGGTGTCAGTGGGCTGTTGTTTGGCTATGAGTCGTTCTTCGCTCTCTTGGCTTCGCCGCTTACGGGCATCTTGGCTGATGCTCTTGGGCGCCGGAGCATCATTCTCATCGCGGACGTCTTGTTCGTTGCTGGCGCGCTCATACAAGCGTTCTCGACTACGGTATGGGGTATGATTCTGGGACGAAGCGTGGTGGGCGCTGCAGTGGGGAGTGCGAGTTTCGTGGTGCCCATGTACATCAGCGAACTGGCGCCTAGTGCATTCCGTGGTAGACTTGTCACTGTCTCAAGTCTCTTCATCACCGGCGGTCAGGTTGTCGCCTACATCATCGGCTGGCTTTTCTCCACGCTACCACATGGATGGAGATGGATGGTTGGTCTCGGCGCACTACCAGCCGCAGTGCAGTTCTGCATGCTCTTCGTCCTTCCAGAAACACCTCGCTACCTGGTAAAGGCTGGAAGGAAAGAACAAGCGAGAGGAGTGTTGAGGAAGGTTTATGGTCTTGGGGACGGGATGGAGAAAATGGTTAATGGCGTGCTGCGCAAAGTCGAGAAAGAGATCCTCGAAGAGGAAGACGCAGCCGGGCTTCGAAACGTCCCTCAAACTTCTAAAACTGGCTGGTCTTCGAAAATCGCCAGAGTGCAAGACAACTTCTCCCAACTCGTCAATGTAGGCGGAAACCGGCGCGCCCTCATCATCGCATGCATGCTACAGGGTTTCCAACAACTATGCGGCTTCAACTCCCTAATGTACTTCTCCGCCACAATCTTCCGCCTCGTCGGCTTCCACAGCCCAACCCTAACCTCTCTCTCCATCGCCCTCACAAACTTCCTCTTCACTCTCCTCGCTTTCCACTTCATCGACCGCGTCGGCCGCCGCCGCATCCTCCTCTTCTCCATCCCAGTCATGATCGCCGGCCTCCTCCTCTGCTCAATCGCCTTCCTGCATGTTGACCTCACCGGCGAAGCCGGCTCTTCCACGCTTTCCAATCGCACATGGCCGCTAGTCATCCTCATTGCAATGGTAACCTACGTCGCGGGCTACGCCACAGGTCTCGGCAACGTCCCATGGCAGCAATCAGAGCTATTTCCGCTGCAAGTACGTAGTCTGGGTAGTGCGCTTGCGACGGCGACGAATTGGGGGAGCAATACGCTTATTGGGGTGACATTCTTGCCTATGATGGAGTTTTTCACGCCGACGGGCACGTTTGGCTTGTATGCGGGCGTTTGTGGGGTGGCGTGGTGGACGGTTTGGAAGATCTATCCTGAGACGGCGGGGCTGGGGTTAGAGGACGTTGGGGGTTTGTTGAGGAACGGATGGGGGGTGGAGGAGAGTGTGAGAGGGTTCAGAGAGAGGAGGAAAAGGTAG > 823 SNOG_03331 gene_prediction_version_2 hypothetical_protein XP_001793899.1 NA MGLRKWVSRPLRGRQIGVENLIAGGEGIPTIDQAPFQIWVVVVAGIGFLTDAFGLFALNVVTPMLGYVYWPSNDPNAVPEVPSSVKTAMMCSTLAGTMIGQVGFGFAADILGRRKMYGLELVIIIVGTMFLLMSSNGERNSMHVAGWLITWRAIMGVGIGADYPLSAPVGQLLANVLSLAAVEAYKPWIERSSHYCKPDDDECFRAIDRLWRLVVGIGIVPAVIALIFRFTIPESPRYTLDILQNTRATLEDTANYFDAPELHAEHGPVEMFPTRPEIHVSPRTSICSGIGPDEIIEDDSDSDRRPSDAHLRQPSPEPDLPPGDPNFVPPLASWTDAKKFFIAEVYGLGLSSPQIVSNIWGDPKIDKVVSKFPSVYETLHGNSLHTLVMVSIGTITGGLLMIKIVKHVSPKTIQFWGFLVLFVLFIVTGTEIFPTRYRCTCHGIAAASGKLGSWLVQIFLAYAFKSEDADDQNSWTNARFKDFGKVLQVMSAFMVAGAITTYFHVPETRDHDNKSRTLEVLACGKKVIDELNKQRRREDEDDS bitunicate_ascomycetes Phaeosphaeria_nodorum_SN15 Phaeosphaeria_nodorum_SN15 XM_001793847 NA Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Oleary,S.,_Oliver,R.O._and_Solomon,P. NA 0:1632 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884553).COMPLETENESS:_incomplete_on_both_ends. NA 02-APR-2008 Phaeosphaeria_nodorum_SN15_hypothetical_protein_partial_mRNA. NA Phaeosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Phaeosphaeria_nodorum_Q0UY33_PHANO.gb Phaeosphaeria 169600953 Unpublished fungi XM_001793847 NA NA Pleosporales sac_fungi NA 1632 NA mRNA NA NA NA Stagonospora_nodorum NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 321614 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Phaeosphaeriaceae,_Phaeosphaeria Annotation_of_the_Phaeosphaeria_nodorum_SN15_genome NA XM_001793847.1 ATGGGTCTCCGAAAGTGGGTCTCGCGACCGTTGAGGGGCCGTCAGATCGGAGTTGAAAACCTTATCGCGGGTGGTGAAGGCATACCAACGATCGACCAAGCGCCGTTCCAGATATGGGTCGTGGTTGTCGCTGGGATCGGCTTCCTAACTGACGCTTTTGGCTTGTTCGCCCTCAATGTCGTAACTCCGATGCTAGGCTATGTATACTGGCCCAGCAATGATCCAAATGCCGTTCCTGAGGTGCCATCGTCTGTCAAGACAGCCATGATGTGTTCCACGCTTGCTGGTACCATGATAGGGCAAGTGGGATTCGGCTTCGCCGCCGACATCTTAGGTCGGCGGAAGATGTATGGACTGGAACTCGTCATCATCATAGTAGGGACTATGTTTCTGTTGATGAGCTCGAACGGTGAGAGAAACAGCATGCATGTCGCAGGCTGGCTCATAACTTGGCGAGCTATAATGGGAGTGGGAATTGGTGCGGATTACCCTTTGAGCGCTCCCGTGGGACAACTCCTTGCAAACGTGCTGTCTTTGGCAGCCGTCGAAGCGTACAAGCCATGGATCGAACGGTCCTCGCACTACTGCAAACCAGACGACGACGAATGCTTCCGCGCAATCGATCGCCTCTGGAGGCTAGTTGTCGGTATTGGCATAGTCCCAGCAGTCATCGCATTAATTTTTCGCTTCACGATACCAGAATCGCCTCGCTACACACTGGATATTCTGCAAAACACGCGAGCAACGCTAGAAGATACAGCCAACTACTTCGATGCACCTGAACTTCACGCCGAGCATGGGCCAGTCGAGATGTTCCCCACCAGACCCGAGATCCACGTCTCGCCCCGCACTTCTATTTGCTCAGGAATTGGACCAGACGAAATCATTGAGGATGACAGCGATTCTGACAGAAGACCAAGCGACGCACATCTTCGCCAGCCATCTCCAGAGCCGGACCTACCGCCAGGTGACCCCAACTTCGTTCCGCCTCTTGCTTCTTGGACAGACGCGAAGAAGTTCTTCATCGCCGAGGTCTATGGTCTTGGACTCTCGTCGCCGCAGATTGTAAGCAACATCTGGGGAGACCCAAAGATTGACAAAGTCGTATCAAAGTTTCCCTCCGTTTATGAGACGCTCCACGGTAACAGCTTACACACACTGGTCATGGTATCCATCGGTACTATTACCGGTGGGCTGCTGATGATCAAGATTGTGAAGCATGTTTCACCGAAGACGATCCAATTCTGGGGCTTTCTTGTCCTGTTTGTGTTGTTTATCGTCACTGGTACCGAGATCTTCCCAACTCGATACCGCTGCACATGCCACGGCATCGCCGCTGCTTCCGGCAAGCTGGGCTCATGGCTAGTTCAAATCTTCCTCGCATATGCCTTCAAGTCCGAAGATGCGGACGACCAAAACTCATGGACAAATGCGCGTTTCAAAGACTTTGGTAAGGTCTTGCAAGTCATGAGCGCGTTCATGGTAGCCGGTGCGATTACGACATACTTCCATGTGCCGGAGACGAGAGATCACGATAATAAGAGTAGGACACTGGAGGTGCTGGCGTGTGGAAAGAAAGTTATTGATGAGCTGAATAAACAGAGGAGAAGGGAGGATGAGGATGACTCTTGA > 824 SNOG_01779 gene_prediction_version_2 hypothetical_protein XP_001792407.1 NA MFIAARFIAGWGSWGFLAVKLAPPGLRGFFVGMNGVNIALGYAIASYMGMAFYFAESHDAKWRGPLGIALIWPAMMIAITFVVPESPRYLLMKGRIEEARTIVMRLHSIKGDPDHEFARGEFYQMVKQTEVDRTLEPGWIAMFTKKGYRHRTALAMGFAFVGQSTGVLVINNYGPTLYAALGYGTKQQLEFQCGWITVGIVFNAIGAVFLDKVGRKPLMLIGVGGCCVCLIVEAAIVANYAEAATNKAALAAGVAMFYLFLAVYSMGVDVAGVVFYSELFPNHIRAKGVCLSMATVALTDLVYLQATTTAFANIGWRFYLVFIVITGVGVVGAYFLLPETKGIPLEEMAHIFGDDVVVNLDDVHINHDTHELVIGGGMLEHVATYQVTNPEAEKYAGRVNRENFGAQKGCIGRHAR bitunicate_ascomycetes Phaeosphaeria_nodorum_SN15 Phaeosphaeria_nodorum_SN15 XM_001792355 NA Birren,B.,_Lander,E.,_Galagan,J.,_Devon,K.,_Nusbaum,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Oleary,S.,_Oliver,R.O._and_Solomon,P. NA 0:1251 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001884550).COMPLETENESS:_incomplete_on_both_ends. NA 02-APR-2008 Phaeosphaeria_nodorum_SN15_hypothetical_protein_partial_mRNA. NA Phaeosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Phaeosphaeria_nodorum_Q0V2I5_PHANO.gb Phaeosphaeria 169597966 Unpublished fungi XM_001792355 NA NA Pleosporales sac_fungi NA 1251 NA mRNA NA NA NA Stagonospora_nodorum NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 321614 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Phaeosphaeriaceae,_Phaeosphaeria Annotation_of_the_Phaeosphaeria_nodorum_SN15_genome NA XM_001792355.1 ATGTTCATCGCAGCTCGTTTCATTGCGGGCTGGGGTAGTTGGGGATTTCTGGCCGTGAAACTCGCACCGCCCGGTCTTCGTGGTTTCTTTGTTGGTATGAATGGTGTGAATATCGCACTCGGCTATGCTATCGCAAGTTACATGGGCATGGCCTTCTATTTCGCAGAGTCTCACGATGCCAAATGGCGCGGCCCACTCGGTATCGCGCTTATCTGGCCTGCCATGATGATCGCTATCACATTCGTCGTTCCCGAGTCACCCAGATATCTGCTCATGAAGGGTCGAATTGAGGAAGCGCGCACCATCGTGATGAGGTTGCATAGCATCAAGGGCGACCCAGATCATGAGTTTGCGAGAGGCGAGTTTTACCAAATGGTCAAGCAGACCGAAGTAGACCGAACTCTTGAACCAGGCTGGATCGCCATGTTCACTAAGAAGGGCTATCGTCATCGCACTGCGCTTGCTATGGGTTTCGCTTTCGTAGGTCAATCGACTGGTGTTCTTGTCATCAACAACTACGGTCCGACACTGTATGCGGCGCTGGGATATGGCACCAAACAACAACTGGAATTCCAATGCGGCTGGATCACTGTCGGCATCGTCTTCAACGCCATCGGTGCCGTATTCCTGGACAAAGTCGGCCGAAAGCCACTTATGCTGATTGGTGTTGGTGGCTGTTGCGTTTGTCTGATCGTTGAAGCAGCCATTGTCGCAAATTATGCAGAAGCAGCAACGAACAAAGCGGCACTGGCAGCCGGAGTAGCCATGTTTTACCTCTTCCTCGCGGTCTACAGTATGGGTGTCGACGTCGCCGGAGTGGTCTTTTACTCGGAACTCTTCCCGAATCACATTCGCGCCAAAGGTGTCTGTCTTAGCATGGCGACAGTCGCGCTTACGGACCTCGTATATCTTCAGGCGACAACCACAGCTTTTGCAAATATCGGGTGGCGCTTCTATCTGGTTTTCATCGTCATCACTGGCGTGGGAGTTGTTGGCGCATACTTCCTGCTGCCTGAGACAAAAGGCATACCACTAGAAGAAATGGCACACATTTTCGGGGATGATGTTGTTGTGAACCTCGATGACGTGCACATCAATCACGACACGCATGAGTTGGTCATAGGTGGAGGGATGTTGGAGCATGTGGCCACGTATCAGGTGACAAATCCTGAGGCTGAGAAGTACGCCGGGAGAGTGAATCGGGAGAATTTTGGTGCGCAAAAGGGTTGTATAGGCAGACATGCACGGTGA > 825 PHZ_c2988 NA major_facilitator_family_transporter YP_002131826.1 11 MTATETGADSQAPAALTTAGLTPLQRAKAIVGGSAGNLVEWYDWFAYSSFALYFAPHFFPEGDTTAQLLQTAAIFAVGFFARPLGAWLMGLYADWKGRRAALAVSVGMMCAGAFAIAILPDARQIGALAPVGLLAARILQGLSVGGEYGASATYMSEMAGRARRGFWASFQYVTLIAGQLLALGVLVLLQNVMDPAVLEDWGWRIPFVIGGLLAVVVFWIRAGMDESPSYEAAKAEGAERARTMMLFARFPRESAIIFVLTAAGSLAFYAYTTYMQKFLVNTAGFDKSAATAVTAVALVVYMGCQPLFGWLSDKLGRKTTIAFAFAGGALATYPVMSALAGGPSQGEALALVTLLLVVLSGYTAVSGLVKAELFPAHVRALGVALPYALANALFGGTAEYVALWFKDVGAESGFYVYVSGMMAAGFLVAVRLRNTNVHSLIRED alpha_subgroup Phenylobacterium_zucineum_HLK1 Phenylobacterium_zucineum_HLK1 NC_011144 3407268..3408602 Luo,Y.,_Xu,X.,_Ding,Z.,_Liu,Z.,_Zhang,B.,_Yan,Z.,_Sun,J.,_Hu,S._and_Hu,X. NA 0:1335 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000747.Source_bacteria_available_from_Cancer_Institute,_the_SecondAffiliated_Hospital,_Zhejiang_University_Medical_School,_to_whomcorrespondence_should_be_addressed._E-mail:_luoyingfeng@zj165.com.COMPLETENESS:_full_length. NA 15-DEC-2011 Phenylobacterium_zucineum_HLK1_chromosome,_complete_genome. NA Caulobacteraceae_Henrici_and_Johnson_1935 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Phenylobacterium_zucineum_B4R9D7_PHEZH.gb Phenylobacterium_Lingens_et_al._1985_emend._Tiago_et_al._2005 197103466 BMC_Genomics_9,_386_(2008) NA NC_011144 NA NA Caulobacterales_Henrici_and_Johnson_1935 purple_photosynthetic_bacteria_and_relatives 18700039 1335 NA genomic_DNA NA HLK1 NA Phenylobacterium_zucineum NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 450851 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Caulobacterales,_Caulobacteraceae,_Phenylobacterium Complete_genome_of_Phenylobacterium_zucineum--a_novel_facultative_intracellular_bacterium_isolated_from_human_erythroleukemia_cell_line_K562 NA NC_011144.1 ATGACGGCCACGGAAACCGGGGCTGACAGCCAGGCGCCGGCCGCGCTGACGACCGCGGGGCTGACGCCGCTGCAGAGGGCGAAGGCGATCGTCGGCGGCTCGGCCGGCAACCTCGTCGAATGGTACGACTGGTTCGCCTACTCCTCCTTCGCCCTCTACTTCGCCCCGCACTTCTTCCCAGAGGGCGACACCACCGCCCAGTTGCTGCAGACCGCCGCCATCTTCGCGGTGGGCTTCTTCGCCCGGCCGCTCGGCGCGTGGCTGATGGGGCTCTACGCCGACTGGAAAGGCCGGCGCGCCGCCCTGGCCGTCAGCGTCGGCATGATGTGCGCCGGGGCCTTCGCCATCGCCATCCTGCCCGACGCGCGGCAGATCGGGGCCCTGGCGCCGGTGGGCCTGCTGGCCGCCCGCATCCTGCAGGGCCTGTCGGTGGGCGGCGAGTACGGCGCCAGCGCCACCTACATGTCCGAGATGGCCGGCCGCGCCCGCCGCGGCTTCTGGGCCAGCTTCCAGTACGTGACCCTGATCGCCGGCCAACTCCTGGCGCTGGGCGTGCTCGTGCTGCTGCAGAACGTGATGGACCCGGCGGTGCTCGAGGACTGGGGCTGGCGCATCCCGTTCGTCATCGGCGGCCTCCTGGCCGTGGTGGTCTTCTGGATCCGCGCCGGCATGGACGAGAGCCCGTCCTACGAGGCCGCCAAGGCCGAAGGCGCCGAGCGCGCGCGGACCATGATGCTGTTCGCCCGCTTCCCGCGCGAGAGCGCCATCATCTTCGTGCTGACGGCGGCGGGCTCCTTGGCCTTCTACGCCTACACCACGTACATGCAGAAGTTCCTGGTCAACACCGCCGGCTTCGACAAGAGCGCGGCGACGGCCGTCACCGCCGTGGCCCTGGTGGTCTACATGGGCTGCCAGCCGCTGTTCGGATGGCTGTCGGACAAGCTGGGCCGCAAGACCACGATCGCCTTCGCCTTCGCCGGAGGCGCGCTCGCCACCTATCCCGTGATGTCGGCCCTGGCCGGCGGCCCCAGCCAGGGCGAGGCCCTGGCGCTGGTCACCCTGCTGCTGGTGGTGCTGTCGGGCTACACGGCGGTCAGCGGCCTGGTGAAGGCCGAGCTCTTCCCGGCGCACGTGCGGGCCCTGGGCGTCGCCCTGCCCTATGCCCTGGCCAACGCCCTGTTCGGCGGCACGGCCGAGTACGTCGCGCTCTGGTTCAAGGACGTGGGGGCGGAAAGCGGATTCTACGTCTATGTCTCGGGGATGATGGCGGCCGGCTTCCTGGTGGCCGTCCGCCTGCGCAACACCAACGTGCACAGCCTGATCCGGGAGGACTGA > 826 PBPRB0460 NA hyopthetical_permease YP_132133.1 11 MSSSVETSSKKHNLSYIIRICCIAALGGILLGYDTAVISGAIGPIREYFNLTAAQTGWAVSSVVLGSIIGAISSGWCALKYGRRKALFLAALLFIISAIGSALAATFTIYVLFRIVGGIAVGLACVVSPMYMSEVAPKDFRGRAVSMFQQSAVIGQTGVFYVNYLIAKGMSEAWLVDIGWRWMLASEVLPALLFGSLLIIIPESPRWLVLKGHLDQAKETLSRISNPEHADRVILEIQKSLVPTNASKNNKVSLRSPLLFSILVIGTFVAAAQQLTGINVIMYYTPEILNPIAGGTENALLQTTFVGVVFIFGNALGMYLIDKVGRLPLMKYGTFGCALGMTIVGYVLYTGTEGYAALFALCLYVVAYAASWGCACWTMISEIFPNSIRSRAMAIAVGAQWFTGFIVTQSFPMLNENAYLKEHFNGAFSFWVFAVLSIMCMYVVVKYVPETKGVSLEDMEKVMAEKLGKNKKRQVAEASA gamma_subgroup Photobacterium_profundum_SS9 Photobacterium_profundum_SS9 NC_006371 536404..537846 Vezzi,A.,_Campanaro,S.,_DAngelo,M.,_Simonato,F.,_Vitulo,N.,_Lauro,F.M.,_Cestaro,A.,_Malacrida,G.,_Simionati,B.,_Cannata,N.,_Romualdi,C.,_Bartlett,D.H._and_Valle,G. NA 0:1443 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CR354532.coding_regions_predicted_by_orpheus_and_glimmer;_tRNA_featurespredicted_by_tRNAscan_SE_program.COMPLETENESS:_full_length. NA 23-JAN-2012 Photobacterium_profundum_SS9_chromosome_2,_complete_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Photobacterium_profundum_Q6LK47_PHOPR.gb Photomonas 54301680 Science_307_(5714),_1459-1461_(2005) NA NC_006371 NA NA Vibrionales purple_photosynthetic_bacteria_and_relatives 15746425 1443 2 genomic_DNA NA SS9 NA Photobacterium_sp._DSJ4 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 298386 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Vibrionales,_Vibrionaceae,_Photobacterium Life_at_depth:_Photobacterium_profundum_genome_sequence_and_expression_analysis NA NC_006371.1 TTAAGCGCTTGCTTCTGCAACTTGACGTTTCTTATTTTTACCTAGTTTTTCAGCCATGACTTTTTCCATGTCTTCCAAGCTAACGCCTTTCGTTTCAGGTACATACTTAACAACAACATACATACACATGATAGAAAGAACCGCGAACACCCAGAAGCTGAATGCACCATTAAAGTGCTCTTTTAGGTAAGCATTTTCATTTAACATCGGGAAAGACTGGGTAACAATGAAACCCGTAAACCATTGTGCACCAACAGCAATGGCCATTGCACGAGAACGGATGCTATTCGGGAATATTTCTGAAATCATTGTCCAGCAGGCACAGCCCCAAGATGCAGCATATGCGACAACATATAGACAGAGTGCGAATAAAGCCGCATAGCCTTCAGTGCCCGTATACAGCACATAACCCACAATAGTCATACCTAGCGCACAACCGAATGTACCGTATTTCATCAGTGGTAAACGACCCACTTTATCAATCAGGTACATACCTAAAGCATTACCAAAAATAAAGACGACACCCACGAAAGTGGTTTGTAATAGTGCGTTTTCAGTACCACCCGCAATCGGATTTAGAATTTCTGGTGTGTAGTACATAATGACATTAATACCGGTTAACTGCTGTGCTGCAGCAACAAAAGTACCAATAACCAGAATGGAGAATAGTAATGGTGAACGTAAGCTGACCTTATTATTTTTTGATGCATTAGTGGGTACTAATGATTTTTGTATTTCAAGAATAACGCGGTCGGCATGTTCAGGGTTAGAAATACGTGAAAGGGTTTCTTTTGCTTGATCAAGGTGTCCTTTTAAGACTAACCAACGAGGTGATTCAGGAATGATAATTAACAGGCTACCAAATAATAAGGCAGGTAGAACTTCTGATGCTAGCATCCAACGCCAGCCTATATCAACAAGCCACGCTTCAGACATGCCTTTTGCAATCAGATAGTTAACGTAGAACACACCCGTTTGACCAATAACGGCAGATTGTTGGAACATGCTGACTGCACGCCCCCTGAAATCTTTCGGGGCGACTTCAGACATATACATAGGAGAGACAACACATGCTAAACCAACCGCAATACCCCCTACAATTCTGAATAACACATAGATGGTAAAGGTAGCGGCAAGGGCAGAGCCTATCGCGGAAATGATGAATAAAAGAGCAGCTAAGAATAATGCTTTTCTACGGCCATATTTAAGCGCACACCAGCCAGAACTGATTGCACCAATAATACTGCCTAATACAACACTGGAAACAGCCCATCCGGTTTGTGCCGCCGTTAAGTTGAAGTATTCTCTTATCGGTCCGATAGCTCCTGAAATAACAGCGGTATCATATCCTAATAAGATCCCCCCTAATGCAGCGATACAACAAATTCGAATGATGTAACTCAGGTTATGTTTTTTTGATGATGTCTCGACACTTGATGACAT > 827 PAU_00761 The_MFS_transporters_are_single-polypeptide_secondary_carriers_capable_only_of_transporting_small_solutes_in_response_to_chemiosmotic_ion_gradients_,_.;_similar_to_DNA_sequence:INSD:BX571873;_similar_to_DNA_sequence:INSD:BX950851 transport_protein YP_003039598.1 11 MQASFKTPKSYIISMILGSSLVGLAMGYTLPMVSLKLASQEHNPAMLGIMSALPAIGMFISSTLMPIFIRTWSLNKLLVISLFLLAASCLFSSYFNRLLYLALPRFLMGFACGVIIVIGESWLSSNICDKYRGTLMGLYTSVFTGCQLIGPLLISVFGVKSLIPSALLSFLVVFCIILILTNPSSLLSQQTEEKTKLPILSLVMSIPCLVVGVFCFSFFDATALSMLPLYGISNGISEQVTITLVTLLFCGDALFQMPLGWFADRVGLKRVHVICGTVFVISLLLLPLTINTILLWINVVILGAFGGGIYTLSLVRVGKKYSGQALVAVNSLFGVVWGVGSLLGPLMTGTAMTIFGKDGFIIMLISIGLLFIVSHLIPKKVVSLA gamma_subgroup Photorhabdus_asymbiotica_subsp._asymbiotica_ATCC_43949 Photorhabdus_asymbiotica_subsp._asymbiotica_ATCC_43949 NC_012962 864113..865270 Wilkinson,P.,_Waterfield,N.R.,_Crossman,L.,_Corton,C.,_Sanchez-Contreras,M.,_Vlisidou,I.,_Barron,A.,_Bignell,A.,_Clark,L.,_Ormond,D.,_Mayho,M.,_Bason,N.,_Smith,F.,_Simmonds,M.,_Churcher,C.,_Harris,D.,_Thompson,N.R.,_Quail,M.,_Parkhill,J._and_Ffrench-Constant,R.H. NA 0:1158 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_FM162591.COMPLETENESS:_full_length. NA 27-OCT-2011 Photorhabdus_asymbiotica_subsp._asymbiotica_ATCC_43949_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Photorhabdus_asymbiotica_B6VMK3_PHOAA.gb Photorhabdus_(Boemare_et_al._1993)_emend._Fischer-Le_Saux_et_al._1999 253987483 BMC_Genomics_10,_302_(2009) NA NC_012962 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19583835 1158 NA genomic_DNA NA NA NA Photorhabdus_asymbiotica_Fischer-Le_Saux_et_al._1999_emend._Akhurst_et_al._2004 NA forward NA NA NA NA NA NA Photorhabdus_asymbiotica_subsp._asymbiotica_Fischer-Le_Saux_et_al._1999 NA NA NA prokaryotes NA 553480 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Photorhabdus Comparative_genomics_of_the_emerging_human_pathogen_Photorhabdus_asymbiotica_with_the_insect_pathogen_Photorhabdus_luminescens NA NC_012962.1 ATGCAAGCCAGCTTCAAAACACCAAAATCATACATAATATCAATGATATTAGGTTCATCTCTCGTGGGATTGGCAATGGGATATACATTACCTATGGTCAGTTTGAAGTTGGCAAGTCAAGAACATAATCCTGCTATGCTAGGTATTATGTCAGCGCTTCCGGCTATAGGAATGTTTATTTCTTCAACCTTAATGCCAATATTTATTCGTACCTGGAGTTTAAATAAATTACTGGTTATCAGTTTATTTTTATTGGCAGCGTCCTGTTTGTTTTCCTCTTATTTTAATCGGTTACTTTATCTGGCTTTGCCAAGATTTCTGATGGGCTTTGCATGTGGTGTTATCATTGTCATTGGTGAATCATGGTTGAGTAGCAATATCTGTGATAAATATAGAGGGACATTAATGGGGTTATACACTTCGGTTTTTACCGGGTGCCAGCTAATAGGGCCGCTATTAATTTCAGTATTTGGAGTAAAATCTTTAATTCCCTCAGCTTTGCTGTCATTTTTAGTTGTCTTTTGTATTATACTGATATTAACAAACCCATCTTCCTTATTATCACAGCAAACAGAGGAAAAGACTAAATTGCCTATTTTATCTCTGGTGATGTCTATTCCTTGCCTTGTGGTTGGTGTTTTCTGTTTTTCTTTTTTTGATGCAACTGCATTATCGATGCTCCCTTTATATGGGATATCAAATGGAATATCCGAGCAAGTGACGATTACTTTAGTGACATTGCTTTTTTGCGGAGATGCACTTTTTCAAATGCCTCTGGGCTGGTTTGCTGATAGAGTGGGTTTAAAACGCGTGCATGTTATTTGTGGAACCGTCTTCGTAATTTCTTTATTGTTATTACCGCTGACTATCAATACCATTCTTTTATGGATTAATGTCGTTATATTAGGGGCATTTGGTGGTGGAATTTATACTCTCTCATTAGTCAGGGTAGGAAAAAAATATTCAGGGCAGGCTTTAGTTGCTGTAAATTCTCTTTTTGGGGTTGTTTGGGGAGTGGGAAGCCTTTTAGGTCCTTTAATGACGGGGACCGCCATGACGATCTTTGGCAAAGATGGGTTTATTATAATGCTCATTTCAATCGGTCTGCTATTTATCGTCTCCCATCTGATTCCAAAGAAAGTTGTTTCATTGGCATGA > 828 NA transmembrane_protein;_HpHxs1 glucose_sensor ACA58225.1 NA MSTEARDHSPPLELRDLSLQEPAGCVEVRDTYTTTDYDQSAQPSVEDEKKDQAPDGAELECQRNWSSIMAVYVGLLMAIGGFLYGYDTGIINGLLEMKYVKRTFPPNNAGGFSASQSSIITSVLSIGTFVGSLFAPVLSDRVGRRLSIVASSTIMFSLGTILQLVSEGIPLLCVGRFVSGFGVGMISAIIPLYQAEVSPKWIRGSVISFYQWAITWGLLVSSAITQATHSIDDARCYRIPIGLQLIWGVVLGIGMYSLPESPRFFVKKDRLDDALHALSRFRRLPLNDKSLVEELIEIKASHDYEMSFGPTSIMDCFRSSPSRASQLRRMLTGMLLQALQQCSGINFIFYYGVNYFVRAGIANSYLISFITYTVNVVFTIPGIFSVEIWGRRWLLIVGAGGMTVSNFVIAAVGVTTDSLIANKVIVAFVCLFIAFFASTWGPLAWVVVGEMYSLSVRQKAVALTAATNWLVNFIFACCTPYLVDTGKHTAALGTKIFFLWGSLNFVGMVFAYFYIYETKGLLLEEVDELFRVCKSARKSMYFKPHTETQENEGSPRHSESHRANAVAMTLDILNVPNNVPPSVHSTDDESEFYHPHLSEYLGPQPEYNYTNQEDLMGLIRSLGVGLDGTAESVHSHGQ Saccharomycetes Ogataea_angusta Ogataea_angusta EU476006 1253..3169 Stasyk,O.G.,_Maidan,M.M.,_Stasyk,O.V.,_Van_Dijck,P.,_Thevelein,J.M._and_Sibirny,A.A. NA 0:1917 NA NA 09-APR-2008 Pichia_angusta_glucose_sensor_(HXS1)_gene,_complete_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pichia_angusta_B1PM37_PICAN.gb Ogataea 169626982 Eukaryotic_Cell_7_(4),_735-746_(2008) fungi EU476006 glucose_sensor NA budding_yeasts sac_fungi 18310355 1917 NA genomic_DNA NA NA NA Pichia_angusta NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 870730 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetales_incertae_sedis,_Ogataea Identification_of_hexose_transporter-like_sensor_HXS1_and_functional_hexose_transporter_HXT1_in_the_methylotrophic_yeast_Hansenula_polymorpha NA EU476006.1 ATGTCGACAGAAGCTCGAGATCACTCGCCCCCGCTAGAACTGCGGGATTTGAGCTTACAGGAACCCGCTGGATGCGTCGAAGTTCGAGATACTTATACAACCACTGACTACGATCAGTCCGCACAGCCCTCTGTGGAGGATGAGAAAAAAGACCAGGCTCCGGATGGGGCTGAGCTCGAGTGCCAGAGGAACTGGTCGTCCATTATGGCCGTCTACGTGGGTTTGCTAATGGCCATCGGGGGCTTTTTGTATGGTTACGACACAGGTATCATCAACGGCCTGCTAGAAATGAAATACGTGAAAAGAACGTTCCCGCCTAACAACGCGGGTGGGTTCAGCGCGAGTCAGTCATCCATCATCACGTCAGTGCTTTCGATCGGTACTTTTGTGGGCTCGTTATTTGCGCCCGTGCTCTCAGATAGAGTGGGGCGACGGCTGAGTATCGTCGCGTCGTCCACAATTATGTTTTCGCTCGGCACGATATTGCAGCTTGTCTCGGAAGGTATCCCACTGCTCTGTGTTGGCCGCTTTGTCAGCGGCTTCGGCGTGGGCATGATATCGGCCATCATACCGCTCTACCAGGCCGAGGTGTCGCCCAAGTGGATCAGAGGATCTGTGATTTCGTTTTACCAATGGGCCATTACGTGGGGGTTGCTTGTTTCGAGCGCCATCACCCAAGCAACGCACTCCATCGATGACGCCCGCTGCTACCGCATCCCGATCGGCCTGCAGCTGATCTGGGGCGTCGTCTTAGGCATTGGAATGTACTCGCTGCCCGAATCGCCGCGGTTCTTTGTCAAAAAAGATCGTCTTGACGACGCCCTCCACGCTCTCTCGCGATTCCGCCGCCTGCCCCTGAACGACAAGTCGCTGGTCGAGGAGTTAATTGAAATCAAGGCCAGCCACGACTACGAGATGAGCTTTGGCCCCACAAGTATCATGGACTGTTTCCGCAGCTCGCCAAGCCGCGCCAGCCAGCTGCGCCGCATGCTCACAGGCATGCTTTTGCAGGCGCTGCAGCAGTGCTCGGGAATTAATTTTATTTTCTACTATGGGGTCAACTATTTTGTGCGCGCAGGAATAGCCAACTCATACCTGATCTCGTTTATCACCTACACAGTCAACGTGGTGTTCACCATACCGGGCATTTTTTCGGTCGAGATTTGGGGCCGGAGATGGCTGCTAATTGTTGGGGCTGGTGGAATGACGGTGTCGAATTTTGTCATCGCCGCGGTCGGCGTGACCACGGACTCTCTCATTGCCAACAAGGTGATTGTCGCGTTTGTATGTCTCTTCATCGCATTCTTCGCCTCCACGTGGGGCCCCCTTGCTTGGGTCGTTGTGGGAGAAATGTACAGTTTGTCGGTACGGCAGAAGGCCGTCGCACTGACCGCTGCTACCAATTGGCTGGTGAATTTTATTTTTGCATGCTGTACGCCATACCTGGTTGACACAGGCAAGCACACTGCCGCTCTGGGTACCAAGATCTTCTTTCTTTGGGGGTCTCTGAATTTTGTGGGCATGGTGTTCGCCTACTTTTACATCTACGAAACGAAAGGACTGCTTTTGGAGGAGGTGGACGAGCTATTCAGGGTGTGCAAGAGCGCACGCAAGTCCATGTATTTCAAGCCGCACACAGAAACGCAGGAGAACGAGGGTTCCCCGCGACACTCGGAGTCACATAGGGCTAACGCTGTGGCCATGACCTTGGACATTTTGAACGTGCCAAACAATGTGCCTCCATCGGTCCACTCGACAGACGATGAGAGCGAGTTTTACCATCCGCACCTGAGCGAATACCTGGGTCCCCAGCCAGAGTACAATTACACTAACCAGGAGGACCTGATGGGGTTAATTCGTAGTTTGGGCGTCGGTTTGGATGGAACAGCAGAGTCTGTACATAGCCATGGACAATAA > 829 NA transporter;_complements_maltose_permease_deficiency_in_a_~Saccharomyces_cerevisiae_maltose_permease_negative_mutant_CMY1050 maltose_permease AAX92669.1 NA MPEFVENIEKPEEAEVIPDITKKINTLSDSDDGSGAFNDYIARFVEISTNAQNNEHQEKHMSLKEGLKTFPKAACWSIVLSTAIIMEGYDTTLLNSLYSMQSFAKKYGKYYPEIDQYQVPAKWQTSLSMSTYVGEIVGLYIAGLVAEKWGYRRTLISFMAAVVGLIFILFFAVDVQMLLAGELLCGIVWGAFQTLTVSYASEVCPVVLRIYLTTYVNACWVIGQLIAACLLRGTMTLTSEWSYKIPFAVQWIWPVPIMIGIYLAPESPWWLVKKNRDAEAKKSITRLLSPNTEVPDVAPLAEAMLNKMQLTIKEESARTSNVSYFDCFKHGNFRRTRIAAMIWLIQNITGSVLMGYSTYFYIQAGLDSSMSFTFSIIQYALGLLGTLASWLLSQKLGRFDIYFLGLSINTCILIIVGGLGFSSSTSASWAIGSLLLVFTFVYDSSIGPITYCTVAEIPSSTVRAKTVALARNWYNLSQIPLSIVTPYMLNPTAWNWKAKAALLWAGLSICSLIYIWFEFPETKGRTYAELDILFKNGTSARKFRSTQVETFNPQEMLKKMNNEDIIQVVDGDLDAGAATAKV Saccharomycetes Ogataea_angusta Ogataea_angusta AY917133 23..1771 Viigand,K.,_Tammus,K._and_Alamae,T. NA 0:1749 NA NA 03-NOV-2005 Pichia_angusta_strain_CBS_4732_maltose_permease_(MAL2)_gene,_complete_cds. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pichia_angusta_Q32SL4_PICAN.gb Ogataea 62638141 FEMS_Yeast_Res._5_(11),_1019-1028_(2005) fungi AY917133 maltose_permease NA budding_yeasts sac_fungi 16103021 1749 NA genomic_DNA NA CBS_4732 NA Pichia_angusta NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 870730 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetales_incertae_sedis,_Ogataea Clustering_of_MAL_genes_in_Hansenula_polymorpha:_cloning_of_the_maltose_permease_gene_and_expression_from_the_divergent_intergenic_region_between_the_maltose_permease_and_maltase_genes NA AY917133.1 ATGCCTGAGTTCGTCGAAAACATCGAGAAGCCTGAAGAAGCTGAAGTCATTCCAGACATCACAAAGAAAATTAACACACTCTCTGACAGTGATGATGGAAGTGGTGCTTTCAACGATTACATCGCCAGATTCGTCGAGATTTCGACAAATGCCCAAAATAATGAGCACCAAGAAAAGCACATGTCGCTGAAGGAAGGTCTGAAAACTTTCCCAAAAGCTGCCTGCTGGTCGATTGTGCTTTCCACAGCCATCATCATGGAAGGATACGATACCACGCTCCTGAACAGTCTGTACTCAATGCAATCTTTCGCCAAAAAGTACGGCAAGTACTACCCAGAAATTGACCAGTACCAGGTCCCTGCCAAGTGGCAGACATCGCTTTCGATGTCGACTTATGTCGGTGAAATTGTCGGACTGTACATTGCAGGTCTTGTTGCCGAGAAATGGGGATACAGGCGTACGTTAATATCGTTCATGGCAGCCGTTGTGGGTTTAATCTTCATTCTTTTCTTTGCGGTCGACGTGCAGATGCTGCTTGCCGGCGAGCTGCTCTGTGGTATTGTCTGGGGTGCATTCCAGACCCTCACAGTGTCATACGCCTCGGAAGTGTGTCCAGTAGTTCTGAGAATCTACCTTACCACTTATGTCAATGCTTGCTGGGTTATCGGACAGTTGATTGCTGCTTGTTTGCTGAGAGGCACTATGACCCTGACCAGCGAGTGGTCATACAAGATTCCTTTCGCTGTCCAGTGGATCTGGCCTGTGCCAATCATGATTGGAATCTACCTGGCCCCGGAGTCGCCCTGGTGGCTGGTTAAAAAGAACCGAGACGCAGAAGCTAAGAAAAGTATCACAAGGCTTTTGAGTCCAAACACCGAGGTGCCAGATGTTGCTCCGCTAGCCGAGGCAATGCTGAATAAAATGCAACTAACCATCAAGGAAGAGTCTGCGCGCACGTCCAATGTCTCGTACTTTGACTGCTTCAAACACGGGAACTTCAGAAGAACAAGGATTGCCGCCATGATCTGGCTCATCCAGAATATCACTGGATCTGTCTTGATGGGCTATTCGACCTACTTTTACATCCAGGCAGGACTTGACAGCAGTATGTCTTTCACTTTCTCTATCATCCAATATGCACTCGGTCTTCTTGGAACACTTGCCTCGTGGCTCCTCTCGCAAAAATTGGGCCGTTTTGACATCTACTTCTTGGGTCTGAGCATAAACACGTGCATTCTGATAATTGTCGGAGGTTTGGGCTTTTCTTCGTCGACGAGTGCGTCTTGGGCAATTGGCTCGCTGCTCCTTGTCTTCACTTTTGTCTACGACTCGTCCATCGGTCCCATCACCTACTGCACGGTTGCAGAAATCCCTTCGTCGACGGTGCGTGCCAAGACCGTTGCCCTTGCAAGAAACTGGTACAATCTGTCTCAAATTCCGCTCTCCATTGTCACTCCGTACATGCTGAACCCGACTGCTTGGAACTGGAAAGCAAAAGCGGCCCTTTTATGGGCAGGCTTGTCTATTTGCTCACTGATCTACATCTGGTTTGAATTCCCAGAAACAAAAGGAAGAACTTATGCTGAACTGGACATCCTCTTCAAAAACGGTACCAGTGCCCGTAAATTTAGGTCCACTCAGGTGGAAACATTCAATCCTCAGGAAATGTTAAAAAAAATGAATAATGAGGATATTATACAGGTTGTTGATGGCGACCTGGACGCCGGTGCGGCCACTGCTAAAGTTTAA > 830 PGUG_00010 NA hypothetical_protein EDK35912.2 12 MDNGPNSNTMSQSSTADKAQVMVSVASPTDSNPAGATRLEDVIPQLDKPWYRYGWLLQLNIFLLGGILAQVTSGYDGSMMNSLQSLPSWQEYFNHPTGSKLSTMSNGIAIGTLVSIPFTWWLCDFFGRRITIIMGCTVVIIGAIIQGVAKNFGMFTGARILLGVGSCLASAAASPLLAETAYPKHRPAVTALLLASWPLGSFTAALVTWGPYHSSMKTNNWSWRIPSLIQCFYPAIQLVISIFGPESPRWLINKGREEEARKFFVKYHAGGDEASALVAFELAEIKAIIEKEKVQISSNFTQWFRSKQRLRRFFIVCAVPMMAQLCGNALISYYLSIVLRNIGITDANDQLKINIGMTVYGLVWAVVVGINVDRFPRKTMFIGGYILMCITYVIWTILSAINQQQDFKNKGLGKGVVAMIYLFSGFYHIASPVSSTYVMEVCPYHLRAQGSTIYQLAGNVIGFFNNYVNNIAMEAIKWKYYIVWCVWLVVQMGIVYFIFPETRGLGLEEVAQVFGEDISDGYAAGENALHYGIDDTIPKPSVSHDSKRV Saccharomycetes Meyerozyma_guilliermondii_ATCC_6260 Meyerozyma_guilliermondii_ATCC_6260_(Pichia_guilliermondii_ATCC_6260) CH408155 16519..18168 Butler,G.,_Rasmussen,M.D.,_Lin,M.F.,_Santos,M.A.,_Sakthikumar,S.,_Munro,C.A.,_Rheinbay,E.,_Grabherr,M.,_Forche,A.,_Reedy,J.L.,_Agrafioti,I.,_Arnaud,M.B.,_Bates,S.,_Brown,A.J.,_Brunke,S.,_Costanzo,M.C.,_Fitzpatrick,D.A.,_de_Groot,P.W.,_Harris,D.,_Hoyer,L.L.,_Hube,B.,_Klis,F.M.,_Kodira,C.,_Lennard,N.,_Logue,M.E.,_Martin,R.,_Neiman,A.M.,_Nikolaou,E.,_Quail,M.A.,_Quinn,J.,_Santos,M.C.,_Schmitzberger,F.F.,_Sherlock,G.,_Shah,P.,_Silverstein,K.A.,_Skrzypek,M.S.,_Soll,D.,_Staggs,R.,_Stansfield,I.,_Stumpf,M.P.,_Sudbery,P.E.,_Srikantha,T.,_Zeng,Q.,_Berman,J.,_Berriman,M.,_Heitman,J.,_Gow,N.A.,_Lorenz,M.C.,_Birren,B.W.,_Kellis,M._and_Cuomo,C.A. NA 0:1650 NA NA 10-JUN-2009 Pichia_guilliermondii_ATCC_6260_scaffold_1_genomic_scaffold,_whole_genome_shotgun_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pichia_guilliermondii_A5D9Q9_PICGU.gb Meyerozyma_Kurtzman_&_M._Suzuki_2010 61652210 Nature_459_(7247),_657-662_(2009) fungi CH408155 hypothetical_protein NA budding_yeasts sac_fungi 19465905 1650 NA genomic_DNA NA ATCC_6260 NA Yamadazyma_guilliermondii NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 294746 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Meyerozyma Evolution_of_pathogenicity_and_sexual_reproduction_in_eight_Candida_genomes NA CH408155.1 ATGGATAATGGTCCCAATTCCAATACAATGTCCCAGTCTTCTACTGCTGATAAAGCTCAAGTTATGGTTTCCGTTGCTTCCCCTACTGATCTGAATCCTGCTGGGGCTACCAGATTGGAAGATGTCATTCCACAACTTGATAAGCCGTGGTATCGCTACGGATGGTTGCTACAGTTGAACATATTCCTTTTGGGTGGTATTTTGGCTCAAGTTACTTCGGGATACGACGGTTCGATGATGAACTCGTTGCAATCATTACCTAGTTGGCAAGAGTATTTCAACCATCCTACTGGTTCCAAGTTGTCTACTATGAGTAATGGTATTGCAATTGGTACATTGGTATCGATTCCATTCACGTGGTGGTTGTGTGATTTCTTTGGAAGAAGAATTACTATAATAATGGGTTGTACTGTGGTCATCATAGGCGCCATTATCCAGGGTGTAGCGAAGAATTTTGGAATGTTCACCGGAGCCAGAATTTTATTAGGGGTTGGTTCATGTTTAGCTTCCGCTGCGGCGTCGCCATTATTAGCAGAAACAGCTTACCCTAAACATCGTCCAGCAGTCACAGCATTATTGCTCGCATCTTGGCCATTAGGTTCTTTCACGGCTGCCTTGGTCACCTGGGGCCCATACCATTCTTCCATGAAAACGAACAATTGGTCGTGGAGAATCCCCAGTTTGATCCAGTGCTTCTACCCAGCTATTCAATTGGTTATTTCTATCTTTGGACCCGAATCTCCAAGGTGGTTGATTAACAAAGGACGGGAAGAAGAAGCCCGCAAGTTTTTTGTCAAGTACCATGCTGGTGGAGACGAAGCGTCAGCCTTGGTTGCATTTGAGCTAGCAGAGATCAAGGCGATCATTGAAAAGGAAAAAGTTCAAATTCTGAGCAATTTCACCCAATGGTTCAGATCCAAACAACGTCTTAGAAGATTTTTCATTGTCTGTGCCGTTCCCATGATGGCCCAATTGTGTGGAAATGCTCTTATTTCTTATTACTTGTCCATTGTGTTGAGAAACATCGGCATTACCGACGCTAACGACCAGCTCAAAATCAACATTGGTATGACAGTTTATGGTCTTGTTTGGGCAGTTGTTGTCGGGATAAATGTTGACAGGTTCCCAAGAAAAACCATGTTCATTGGAGGCTACATCTTGATGTGCATAACCTATGTCATTTGGACAATTCTTTCAGCCATCAACCAGCAACAAGACTTTAAGAACAAAGGTTTGGGCAAAGGTGTGGTTGCAATGATCTACCTATTTTCAGGATTCTACCACATTGCCTCACCTGTCTCCTCCACTTATGTGATGGAAGTTTGTCCCTATCACTTGAGAGCCCAAGGCTCAACAATATACCAACTTGCTGGTAATGTCATTGGCTTCTTCAACAATTACGTGAACAACATTGCCATGGAGGCAATAAAGTGGAAATACTATATTGTGTGGTGTGTTTGGTTGGTGGTCCAGATGGGTATAGTCTACTTTATTTTCCCTGAAACCAGAGGATTGGGTTTGGAGGAAGTTGCCCAGGTGTTTGGTGAGGATATTTCCGACGGCTATGCAGCTGGCGAGAATGCTCTTCATTATGGCATCGACGACACAATTCCCAAGCCAAGTGTGTCTCACGACAGCAAGAGAGTTTAA > 831 PGUG_00806 NA hypothetical_protein EDK36708.2 12 MSFFGRFSTKFIFMKVMHFHLIIVLQFMFVFNSAASICASQFDIIRRGSPLAATPPPHIYRSFDVSGVENMSSTSSSKDMPPEKEEVSVLQDNNEIPSFLGLRGSKLHNAVAGMCGVGFLLFGYDQGVMSSLLTLGAFKDTFEVYRNGNPTMQSFIIAIYEIGCMVGALSTLYLGDKYGRVRLVFAGAFIMLIGGALQGCAYTVAHLIVARVVSGIGNGLITSTVPVWQAEIAKPEKRGKLIALQGAQITLGIAISYWIDFAFYFTDPSPAAWRVPVSLQCVFPLVILPLVLKLPESPRWLIRVRREEEGRRVFAALLEKPVDDYLVNQHMNEVEESLAAERALGGETFSMKRLFTQGEKRNFHRLCLAGWAQLMQQISGINLITYYAGTIFEKYIGIDPLPSRILAACNGTEYFLASLIPLWTIERFGRRPLLLIGTAGQCLSMVVLTITTKVSDNQGKSQPPAIAAAVFLFVFNSFFAIGMLSITWLYSPEVNSIEIRAPAAAISTACNWISNFAIVLITIPAFDNINSFTYLVFGMINFLMLPVIYFLFPETAGRSLEEMDLIFKQTPVWKPWQAVKIAREMPFIHAGAMEDIEEKRMAEFEHTEHAGLFEDNSITEKMSMKNDKNSI Saccharomycetes Meyerozyma_guilliermondii_ATCC_6260 Meyerozyma_guilliermondii_ATCC_6260_(Pichia_guilliermondii_ATCC_6260) CH408155 1420715..1422610 Butler,G.,_Rasmussen,M.D.,_Lin,M.F.,_Santos,M.A.,_Sakthikumar,S.,_Munro,C.A.,_Rheinbay,E.,_Grabherr,M.,_Forche,A.,_Reedy,J.L.,_Agrafioti,I.,_Arnaud,M.B.,_Bates,S.,_Brown,A.J.,_Brunke,S.,_Costanzo,M.C.,_Fitzpatrick,D.A.,_de_Groot,P.W.,_Harris,D.,_Hoyer,L.L.,_Hube,B.,_Klis,F.M.,_Kodira,C.,_Lennard,N.,_Logue,M.E.,_Martin,R.,_Neiman,A.M.,_Nikolaou,E.,_Quail,M.A.,_Quinn,J.,_Santos,M.C.,_Schmitzberger,F.F.,_Sherlock,G.,_Shah,P.,_Silverstein,K.A.,_Skrzypek,M.S.,_Soll,D.,_Staggs,R.,_Stansfield,I.,_Stumpf,M.P.,_Sudbery,P.E.,_Srikantha,T.,_Zeng,Q.,_Berman,J.,_Berriman,M.,_Heitman,J.,_Gow,N.A.,_Lorenz,M.C.,_Birren,B.W.,_Kellis,M._and_Cuomo,C.A. NA 0:1896 NA NA 10-JUN-2009 Pichia_guilliermondii_ATCC_6260_scaffold_1_genomic_scaffold,_whole_genome_shotgun_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pichia_guilliermondii_A5DC01_PICGU.gb Meyerozyma_Kurtzman_&_M._Suzuki_2010 61652210 Nature_459_(7247),_657-662_(2009) fungi CH408155 hypothetical_protein NA budding_yeasts sac_fungi 19465905 1896 NA genomic_DNA NA ATCC_6260 NA Yamadazyma_guilliermondii NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 294746 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Meyerozyma Evolution_of_pathogenicity_and_sexual_reproduction_in_eight_Candida_genomes NA CH408155.1 ATGAGCTTTTTTGGGAGGTTTTCTACCAAGTTCATTTTCATGAAAGTGATGCATTTTCACCTTATAATTGTCTTGCAGTTTATGTTTGTTTTTAACAGTGCGGCACTGATATGCGCCCTGCAGTTTGACATCATACGGCGGGGGAGTCCTCTTGCAGCAACCCCACCCCCACATATATATAGAAGCTTCGATGTTTCAGGAGTCGAAAACATGTCGCTGACGTCGAGTTCGAAAGATATGCCGCCTGAAAAGGAGGAGGTCAGTGTTTTGCAAGATAATAATGAAATACCCTCATTTTTGGGATTGAGAGGTAGTAAATTGCATAATGCGGTCGCGGGAATGTGTGGTGTTGGTTTCTTGTTGTTCGGTTATGATCAAGGTGTGATGTCCAGTTTGTTAACTTTGGGCGCTTTCAAGGACACTTTTGAGGTCTACAGAAATGGAAATCCAACTATGCAAAGTTTTATTATTGCCATCTACGAAATTGGTTGTATGGTTGGCGCTCTCTCAACTCTTTATTTGGGAGATAAATATGGCAGAGTTAGGTTGGTGTTTGCTGGCGCTTTTATTATGTTGATAGGTGGTGCACTTCAAGGCTGTGCCTATACTGTTGCTCACTTGATTGTTGCAAGAGTCGTATCTGGAATTGGAAATGGTTTGATTACCAGTACAGTTCCGGTATGGCAAGCTGAAATCGCCAAGCCTGAAAAGCGTGGTAAGCTTATTGCACTTCAAGGTGCTCAAATTACTTTGGGAATTGCAATCTCGTACTGGATTGATTTTGCATTTTACTTTACAGACCCAAGTCCTGCTGCATGGCGGGTTCCTGTATCACTCCAATGTGTTTTCCCATTAGTAATTCTTCCTCTTGTGTTGAAATTACCTGAATCTCCACGTTGGTTGATTCGAGTAAGAAGAGAAGAAGAGGGTAGACGAGTATTTGCGGCTTTATTGGAAAAACCGGTAGACGATTATTTGGTAAATCAGCATATGAATGAAGTGGAGGAATCGTTAGCTGCAGAACGTGCACTTGGTGGTGAGACTTTCCTGATGAAAAGGCTTTTTACCCAAGGTGAAAAGAGAAATTTTCACAGACTTTGCTTGGCTGGCTGGGCTCAGCTTATGCAACAGATTTCAGGTATCAATTTGATCACCTACTATGCTGGAACAATTTTTGAAAAATATATTGGAATTGATCCTCTTCCATCCCGGATTTTGGCGGCGTGTAATGGTACTGAGTACTTTTTGGCGTCGTTGATTCCATTGTGGACAATTGAAAGATTTGGTAGACGTCCACTTTTATTGATCGGCACTGCAGGTCAATGTCTTAGTATGGTGGTTTTAACTATCACGACAAAAGTATCTGATAATCAGGGCAAGTCTCAACCCCCAGCCATAGCCGCGGCGGTATTCCTTTTCGTGTTCAATTCGTTTTTCGCAATTGGTATGTTGAGTATCACTTGGTTATACTCTCCGGAAGTGAATTCAATTGAGATCAGAGCTCCAGCTGCTGCCATATCCACCGCGTGTAACTGGATTTCCAACTTTGCAATTGTATTGATTACAATTCCAGCTTTTGACAACATCAACAGTTTCACTTATCTCGTTTTCGGGATGATTAACTTTCTCATGTTGCCAGTAATTTATTTCTTGTTCCCAGAAACAGCAGGAAGAAGTTTGGAGGAAATGGATCTTATTTTCAAGCAAACCCCAGTGTGGAAACCATGGCAAGCTGTCAAGATTGCACGAGAAATGCCATTTATTCATGCTGGAGCTATGGAAGATATTGAAGAAAAGAGAATGGCGGAATTTGAACATACAGAACACGCAGGATTGTTTGAGGATAATTCCATCACAGAGAAAATGTCAATGAAAAACGACAAAAATTCAATCTAA > 832 PGUG_02224 NA hypothetical_protein EDK38126.2 12 MSESFSEKSSEGDTNHQPEIAKLVPALDPDLDNHSISEFTSHSQPWWKVKHLWFLNFCIFVVTLSSTNNGYDGSMLNGFQSLQTWETKMGHPTGHILGALANGQVFGGIIGIFIAPALTDKMGRWWAIVIGQIVSVVGAMLQGASTNYAFFLVSRIILGIGTLIAAVASPTLISEIAYPTHRQVVTTWYNTNWYLGAVIAAWVTYGTRNIKSSTSWRLPSYLQAAMPALQISLFLMVPESPRFLVSKGKIAKAEQVLVKYHTGGSTDERAKNLVKFELGEIEKAIRMEKLANKTKYTDFFTRKSYRRRLFICMFLPVLMQLSGNGLVSFYLPKVMVTIGITDPDRQLQINGCLMIYNLVVAIFIASVAGYFRRRTMFLFATIGMVMTFSIWTILSAINEQRDFKDKSFANGVLAMIFLFYVAFNAGANGLPFLYLTEVLPYSHRAKGINIVQGVSQVISIFNGFVNPIAMDAISWRYYIVYCCVDMVEVITVYFMFPETSGYTLEEVAKVFGDDADHEIAMLASPHKLSVEHVEHTLA Saccharomycetes Meyerozyma_guilliermondii_ATCC_6260 Meyerozyma_guilliermondii_ATCC_6260_(Pichia_guilliermondii_ATCC_6260) CH408156 1839814..1841430 Butler,G.,_Rasmussen,M.D.,_Lin,M.F.,_Santos,M.A.,_Sakthikumar,S.,_Munro,C.A.,_Rheinbay,E.,_Grabherr,M.,_Forche,A.,_Reedy,J.L.,_Agrafioti,I.,_Arnaud,M.B.,_Bates,S.,_Brown,A.J.,_Brunke,S.,_Costanzo,M.C.,_Fitzpatrick,D.A.,_de_Groot,P.W.,_Harris,D.,_Hoyer,L.L.,_Hube,B.,_Klis,F.M.,_Kodira,C.,_Lennard,N.,_Logue,M.E.,_Martin,R.,_Neiman,A.M.,_Nikolaou,E.,_Quail,M.A.,_Quinn,J.,_Santos,M.C.,_Schmitzberger,F.F.,_Sherlock,G.,_Shah,P.,_Silverstein,K.A.,_Skrzypek,M.S.,_Soll,D.,_Staggs,R.,_Stansfield,I.,_Stumpf,M.P.,_Sudbery,P.E.,_Srikantha,T.,_Zeng,Q.,_Berman,J.,_Berriman,M.,_Heitman,J.,_Gow,N.A.,_Lorenz,M.C.,_Birren,B.W.,_Kellis,M._and_Cuomo,C.A. NA 0:1617 NA NA 10-JUN-2009 Pichia_guilliermondii_ATCC_6260_scaffold_2_genomic_scaffold,_whole_genome_shotgun_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pichia_guilliermondii_A5DG23_PICGU.gb Meyerozyma_Kurtzman_&_M._Suzuki_2010 61652209 Nature_459_(7247),_657-662_(2009) fungi CH408156 hypothetical_protein NA budding_yeasts sac_fungi 19465905 1617 NA genomic_DNA NA ATCC_6260 NA Yamadazyma_guilliermondii NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 294746 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Meyerozyma Evolution_of_pathogenicity_and_sexual_reproduction_in_eight_Candida_genomes NA CH408156.1 CTAGGCTAGAGTATGTTCAACGTGCTCGACAGAAAGTTTGTGAGGACTAGCCAACATTGCAATTTCATGGTCGGCATCATCTCCAAAAACTTTTGCAACCTCTTCAAGAGTATAACCTGAGGTTTCTGGGAACATGAAGTACACAGTGATTACTTCCACCATATCCACACAACAGTATACGATGTAATATCTCCAAGATATGGCATCCATTGCAATCGGATTGACAAAGCCATTAAAGATTGAAATGACTTGCAGCACTCCTTGTACGATATTGATTCCTTTGGCACGATGACTATATGGCAAAACCTCTGTCAAGTACAAGAAAGGGAGTCCATTTGCTCCGGCATTGAATGCAACATAAAAGAGAAATATCATAGCCAATACTCCATTTGCAAAGGACTTGTCTTTAAAATCTCGCTGCTCATTGATTGCTGATAAGATGGTCCAAATCAGAAAAGTCATCACCATTCCTATGGTAGCGAACAAGAACATGGTACGCCGACGAAAGTAGCCTGCTACCGAAGCGATAAAGATAGCAACGACAAGATTATAAATCATCAAGCAACCATTGATTTGAAGCTGACGATCGGGATCGGTAATGCCTATGGTGACCATAACCTTGGGCAAATAGAACGAAACGAGTCCGTTTCCTGAAAGTTGCATCAAGACGGGAAGAAACATGCAAATAAAGAGACGACGACGATAACTTTTCCTTGTGAAAAAATCAGTATATTTTGTCTTGTTAGCAAGTTTCTCCATTCTGATGGCTTTTTCAATCTCTCCCAATTCAAATTTGACAAGATTTTTGGCTCGTTCATCAGTGGACCCTCCAGTATGGTATTTCACCAAAACCTGTTCTGCCTTGGCAATTTTACCTTTGCTAACCAAAAACCTTGGAGACTCCGGCACCATCAAAAAGAGACTGATTTGCAATGCTGGCATGGCCGCTTGAAGGTAGCTAGGCAATCTCCATGAAGTGGAAGATTTGATATTTCTTGTACCATAAGTTACCCATGCAGCTATCACCGCACCCAAGTACCAATTGGTGTTGTACCAGGTAGTAACGACTTGGCGATGGGTTGGATAAGCGATTTCAGATATTAATGTTGGTGAAGCAACCGCAGCAATGAGGGTTCCTATTCCCAATATGATTCTTGAAACCAAAAAGAAGGCATAATTTGTGGATGCACCTTGTAACATTGCACCCACAACCGATACAATTTGACCAATTACAATTGCCCACCAACGGCCCATTTTATCAGTCAAAGCTGGTGCTATAAAGATACCGATTATTCCACCGAAAACTTGACCATTTGCTAAAGCTCCCAAGATGTGTCCGGTAGGATGTCCCATTTTTGTTTCCCAAGTTTGTAACGACTGAAACCCGTTCAACATACTTCCGTCGTAACCATTATTGGTTGACGAGAGAGTCACCACAAAAATACAGAAGTTGAGGAACCAAAGATGCTTTACTTTCCACCATGGTTGAGAATGCGAAGTGAATTCGGAGATGGAGTGATTATCGAGGTCTGGATCGAGAGCAGGCACCAATTTGGCAATTTCAGGTTGGTGATTCGTATCGCCTTCCGAAGATTTTTCTGAAAACAGTTCTGACAT > 833 PGUG_03126 NA hypothetical_protein EDK39028.2 12 MTIVVAEKSGTKIEDVLPVLQKPWWRYSHLLRLNFHLLGSIFVLVNSGFDSTMMNNLQTLPSWTNFFNNPSGGTLGTMNIGIPAGSLCCIPFAFIINDLIGRRMTVLLGLAFTIIGGALQTAAQNFGMFVASRFILGFGVGLSSAGAGPILSETAYPTQRPAVTSFLLASFPLGSFVAAVVTWGPYNSSMKYNNWSWRLPSLLQIVFPIFSVVAVALGPESPRWLISKGREDKALQVLVKHHGAGDLQSPLVKFELSEIKAAIELEKAQGGNKWKEWVRTKSNMHRLFINLALPAMMQFCGNALISYYLNIILNNIGYTETTEKLKINIGLTLYGLAWSYGVSILCGRFKRTGLLITSYASMSFFFIIWIVLSAINQQRDFKDKAIGRAIVAMIYLYQGCYHISTPIAMTYIMEILPFSLRGMGAALYQLSGNTASLFNNYVNNIAMDAIQWKYYIVWCVWLLVQIAIVYFFFPETYGLQLEEIAQVFGDDVTYIMAASSKAVGDGDGYLESSSTKENVSAIENTGPKKSPV Saccharomycetes Meyerozyma_guilliermondii_ATCC_6260 Meyerozyma_guilliermondii_ATCC_6260_(Pichia_guilliermondii_ATCC_6260) CH408157 1460629..1462227 Butler,G.,_Rasmussen,M.D.,_Lin,M.F.,_Santos,M.A.,_Sakthikumar,S.,_Munro,C.A.,_Rheinbay,E.,_Grabherr,M.,_Forche,A.,_Reedy,J.L.,_Agrafioti,I.,_Arnaud,M.B.,_Bates,S.,_Brown,A.J.,_Brunke,S.,_Costanzo,M.C.,_Fitzpatrick,D.A.,_de_Groot,P.W.,_Harris,D.,_Hoyer,L.L.,_Hube,B.,_Klis,F.M.,_Kodira,C.,_Lennard,N.,_Logue,M.E.,_Martin,R.,_Neiman,A.M.,_Nikolaou,E.,_Quail,M.A.,_Quinn,J.,_Santos,M.C.,_Schmitzberger,F.F.,_Sherlock,G.,_Shah,P.,_Silverstein,K.A.,_Skrzypek,M.S.,_Soll,D.,_Staggs,R.,_Stansfield,I.,_Stumpf,M.P.,_Sudbery,P.E.,_Srikantha,T.,_Zeng,Q.,_Berman,J.,_Berriman,M.,_Heitman,J.,_Gow,N.A.,_Lorenz,M.C.,_Birren,B.W.,_Kellis,M._and_Cuomo,C.A. NA 0:1599 NA NA 10-JUN-2009 Pichia_guilliermondii_ATCC_6260_scaffold_3_genomic_scaffold,_whole_genome_shotgun_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pichia_guilliermondii_A5DIM5_PICGU.gb Meyerozyma_Kurtzman_&_M._Suzuki_2010 61652208 Nature_459_(7247),_657-662_(2009) fungi CH408157 hypothetical_protein NA budding_yeasts sac_fungi 19465905 1599 NA genomic_DNA NA ATCC_6260 NA Yamadazyma_guilliermondii NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 294746 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Meyerozyma Evolution_of_pathogenicity_and_sexual_reproduction_in_eight_Candida_genomes NA CH408157.1 ATGACGATAGTCGTTGCTGAAAAGAGTGGAACCAAGATTGAAGATGTGTTGCCAGTATTGCAGAAGCCCTGGTGGCGGTATTCACATCTCTTGCGTTTGAATTTCCATCTCCTTGGTTCTATTTTTGTCTTGGTGAACTCGGGTTTCGATTCTACCATGATGAACAATTTGCAAACACTTCCCAGCTGGACTAATTTCTTTAACAACCCTAGTGGTGGAACTCTTGGTACCATGAACATAGGCATTCCCGCTGGATCTTTGTGCTGTATTCCTTTTGCTTTCATTATCAACGATCTTATTGGTAGAAGAATGACGGTCTTGCTCGGTTTGGCCTTTACTATTATTGGCGGTGCTCTTCAGACAGCAGCTCAGAACTTTGGTATGTTTGTCGCCTCCAGATTCATTCTTGGATTTGGCGTGGGATTGTCCTCTGCTGGTGCTGGCCCCATTTTGTCCGAGACTGCTTACCCAACCCAGAGACCTGCCGTAACCAGTTTCCTTCTTGCTTCTTTCCCCTTGGGTTCATTTGTTGCTGCCGTTGTTACTTGGGGCCCATACAATTCGAGCATGAAGTACAACAACTGGTCTTGGAGATTGCCATCTCTTTTACAGATAGTGTTTCCGATTTTCTCGGTCGTCGCAGTTGCCCTTGGACCGGAATCACCTCGTTGGCTAATCTCAAAGGGTCGGGAAGACAAAGCATTGCAAGTTTTAGTCAAGCACCATGGAGCGGGAGACCTCCAAAGTCCACTTGTGAAGTTTGAACTCTCTGAGATCAAGGCGGCAATTGAACTCGAAAAGGCCCAAGGTGGAAATAAGTGGAAGGAATGGGTGCGTACCAAATCGAATATGCATAGACTTTTCATTAATTTGGCACTTCCCGCCATGATGCAATTCTGTGGAAATGCATTGATCTCCTACTACTTGAACATCATTCTAAACAACATCGGTTACACTGAAACTACCGAAAAGCTCAAGATCAATATTGGTCTCACTCTCTATGGACTCGCGTGGAGTTACGGAGTTTCCATTCTTTGTGGTCGCTTCAAGAGAACTGGCTTATTGATCACTTCCTATGCACTGATGTCCTTCTTTTTTATTATCTGGATTGTGTTATCAGCCATCAATCAGCAGAGAGATTTCAAGGATAAGGCTATAGGTAGGGCAATTGTGGCTATGATCTACTTGTATCAGGGATGCTACCATATTTCCACTCCAATTGCCATGACATACATTATGGAGATATTGCCGTTTAGTTTAAGAGGTATGGGTGCTGCCTTGTATCAGTTGAGTGGTAACACGGCATCACTCTTCAACAACTATGTCAACAATATTGCCATGGATGCGATTCAATGGAAATACTATATTGTATGGTGTGTGTGGTTGCTTGTTCAGATCGCAATTGTCTACTTCTTCTTCCCAGAAACGTATGGATTACAATTGGAAGAAATTGCTCAGGTCTTTGGCGACGACGTTACCTACATTATGGCTGCTAGTTCGAAAGCTGTGGGGGACGGAGACGGCTACTTGGAAAGTTCTTCTACCAAAGAAAACGTTAGTGCAATTGAAAACACAGGACCAAAGAAGTCTCCAGTTTAG > 834 PGUG_03688 NA hypothetical_protein XP_001484307.1 NA MVWDIKSRTNTGGLTGRKLRWTVTFIATMGFSLFGYDQGLMSGLITGEQFNSEFPPTKTPTTGSPTHAQTIQGAVTSCYEIGCFFGALFALFRGDKIGRRPLIIAGSFIIIIGTVISVASFHHSWGLGQFVVGRVITGIGNGLNTATIPVWQSEMSKSENRGLLVNFEGSVVAIGTFVAYWIDFGLSYVHSSVQWRFPVAFQIVFAAVVFIGILPLPESPRWLVAHDRKAEAQYILGALNDVSPDDDGVVAELTHISDSVNRFSRSQVGFKDLLTGGKQQHFARMLIGSSTQFFQQFTGCNAAIYYSTVLFEDTVLTGLETAWRRRLSLILGGVFATVYALFTIPSFFLVDTLGRRSLFLIGATGQAVAFTIAFGSLVHPNPENAKGAAVGIFIFICFFAFTVLPLPWIYPPEINPMRTRTIATAVSTCTNWICNFAVVMFTPIFIGKSGWGCYLFFAVLNYLWIPIIFFFYPETAGRQLEEVDIIFAKAHADGTFPFRVAATMPKMNLATIKTEGEQLGLYDDDFEKEQFETKELMEPTGSGTVSPGSDAVLNKVDENDNNVDNVDNRV Saccharomycetes Meyerozyma_guilliermondii_ATCC_6260 Meyerozyma_guilliermondii_ATCC_6260_(Pichia_guilliermondii_ATCC_6260) XM_001484257 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Cuomo,C.,_Kellis,M.,_Rasmussen,M.D.,_Grochow,J.A.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_MacCallum,I.A.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_Zeng,Q.,_Kodira,C.,_Yandava,C.,_Alvarado,L.,_OLeary,S.,_Reedy,J._and_Heitman,J. NA 0:1713 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001809797).COMPLETENESS:_incomplete_on_both_ends. NA 06-JUL-2010 Meyerozyma_guilliermondii_ATCC_6260_hypothetical_protein_(PGUG_03688)_partial_mRNA. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pichia_guilliermondii_A5DK87_PICGU.gb Meyerozyma_Kurtzman_&_M._Suzuki_2010 146416674 Unpublished fungi XM_001484257 NA NA budding_yeasts sac_fungi NA 1713 NA mRNA NA ATCC_6260 NA Yamadazyma_guilliermondii NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 294746 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Meyerozyma Annotation_of_the_Pichia_guilliermondii_(Candida_guilliermondii)_ATCC_6260_Genome NA XM_001484257.1 ATGGTTTGGGACATTAAATCACGAACCAACACAGGTGGATTAACCGGAAGAAAGCTCCGGTGGACGGTGACATTTATTGCAACTATGGGATTTTCTCTCTTTGGTTATGATCAAGGATTGATGTCAGGTCTTATTACTGGAGAACAATTCAATTCGGAATTTCCTCCAACCAAGACTCCAACAACTGGTTCTCCTACTCATGCGCAAACCATTCAAGGTGCGGTGACTTCTTGTTACGAAATTGGATGTTTTTTCGGTGCGCTTTTTGCATTGTTCAGAGGTGACAAGATTGGAAGAAGACCATTGATCATTGCTGGTTCTTTCATTATCATCATTGGAACTGTGATTTCTGTGGCTTCTTTCCATCACAGCTGGGGATTGGGACAGTTTGTTGTTGGAAGAGTTATTACTGGTATTGGAAATGGATTGAACACAGCCACAATTCCTGTTTGGCAATCAGAAATGTCCAAGTCCGAGAACAGAGGATTATTAGTCAATTTTGAAGGTTCGGTGGTTGCTATTGGTACTTTTGTGGCTTACTGGATTGACTTTGGTCTTTCTTATGTTCATTCTTCGGTTCAATGGAGATTTCCAGTGGCTTTCCAAATTGTATTTGCAGCCGTTGTATTCATTGGTATTCTTCCACTTCCTGAATCTCCAAGATGGCTTGTTGCGCACGACCGCAAGGCTGAAGCCCAGTACATCTTGGGTGCTTTGAACGATGTGTCTCCAGACGATGATGGAGTGGTGGCTGAATTGACCCATATTTCCGATTCTGTCAACAGATTTTCCAGATCTCAAGTTGGGTTCAAAGACTTGCTTACTGGAGGAAAGCAGCAACACTTTGCCAGAATGCTCATTGGATCATCGACTCAATTCTTCCAGCAATTCACTGGGTGTAACGCTGCTATTTATTACTCAACGGTACTTTTCGAAGACACCGTTTTGACTGGATTGGAAACAGCATGGAGAAGAAGATTATCATTGATTTTGGGAGGAGTTTTCGCTACTGTTTACGCCTTGTTCACTATTCCTTCCTTCTTCTTGGTGGATACTCTCGGAAGAAGAAGTTTGTTCTTGATTGGAGCCACTGGTCAAGCAGTTGCTTTCACTATTGCATTTGGTTCATTGGTTCATCCTAATCCTGAAAATGCCAAAGGTGCTGCTGTGGGTATCTTCATTTTTATCTGCTTCTTTGCCTTTACCGTTCTTCCTCTTCCATGGATTTACCCACCTGAAATTAACCCTATGAGAACAAGAACCATTGCTACTGCTGTGTCCACTTGTACAAACTGGATTTGCAACTTTGCTGTGGTGATGTTCACACCTATTTTCATTGGTAAGTCGGGCTGGGGTTGTTACCTTTTCTTTGCTGTGCTTAACTATTTGTGGATTCCTATCATCTTTTTCTTTTACCCAGAAACCGCTGGACGTCAATTGGAGGAAGTTGACATTATTTTCGCAAAGGCTCATGCTGATGGTACTTTCCCATTCAGAGTTGCAGCCACTATGCCAAAGATGAACTTGGCCACTATCAAGACTGAAGGTGAACAATTGGGTCTTTACGATGACGACTTTGAAAAGGAACAATTTGAAACCAAAGAATTGATGGAACCCACTGGCTCAGGCACTGTCTCACCCGGCTCTGATGCCGTCTTGAACAAGGTTGATGAGAACGATAATAATGTGGACAACGTTGATAACCGAGTTTAG > 835 PGUG_04612 NA hypothetical_protein EDK40514.2 12 MAAFIFVTVFARNVEMLFVGQILNGFPWGFFCVIGLIYASEVAPLPLRGFLSAYVMMCWATGEIIAAAVLKAMLNNTTQWAYRLLFAIQWVWIPPNFILTLLCPDSPYWLIRKGRVEDAEKSLKRLSSKAVHPNIKRKLQLLIDTNELELKQASEFDDRFKGWKSYVECFKGPNRKRTEIACMSLAGQVLGGNNFAYSPSYFFSQVGLNSTQTYNLNLGITGLAWVGNFVSWFVIAKVGRRKIYITGISFMTIFLLLIGILQTPADKNPSVAWAQVGCIFGWVVSFVLTLAPLAYTILGEVSSTRLRSQSIAIGRNAYTLCQLTAQVVQPYFMNPGNLGLKGRTGFIWFGTSFLTLIWAIFRLPETKDRTYEELDILFERKVPLTKFASYKLDINDEMKC Saccharomycetes Meyerozyma_guilliermondii_ATCC_6260 Meyerozyma_guilliermondii_ATCC_6260_(Pichia_guilliermondii_ATCC_6260) CH408160 8448..9650 Butler,G.,_Rasmussen,M.D.,_Lin,M.F.,_Santos,M.A.,_Sakthikumar,S.,_Munro,C.A.,_Rheinbay,E.,_Grabherr,M.,_Forche,A.,_Reedy,J.L.,_Agrafioti,I.,_Arnaud,M.B.,_Bates,S.,_Brown,A.J.,_Brunke,S.,_Costanzo,M.C.,_Fitzpatrick,D.A.,_de_Groot,P.W.,_Harris,D.,_Hoyer,L.L.,_Hube,B.,_Klis,F.M.,_Kodira,C.,_Lennard,N.,_Logue,M.E.,_Martin,R.,_Neiman,A.M.,_Nikolaou,E.,_Quail,M.A.,_Quinn,J.,_Santos,M.C.,_Schmitzberger,F.F.,_Sherlock,G.,_Shah,P.,_Silverstein,K.A.,_Skrzypek,M.S.,_Soll,D.,_Staggs,R.,_Stansfield,I.,_Stumpf,M.P.,_Sudbery,P.E.,_Srikantha,T.,_Zeng,Q.,_Berman,J.,_Berriman,M.,_Heitman,J.,_Gow,N.A.,_Lorenz,M.C.,_Birren,B.W.,_Kellis,M._and_Cuomo,C.A. NA 0:1203 NA NA 10-JUN-2009 Pichia_guilliermondii_ATCC_6260_scaffold_6_genomic_scaffold,_whole_genome_shotgun_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pichia_guilliermondii_A5DMW1_PICGU.gb Meyerozyma_Kurtzman_&_M._Suzuki_2010 61652205 Nature_459_(7247),_657-662_(2009) fungi CH408160 hypothetical_protein NA budding_yeasts sac_fungi 19465905 1203 NA genomic_DNA NA ATCC_6260 NA Yamadazyma_guilliermondii NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 294746 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Meyerozyma Evolution_of_pathogenicity_and_sexual_reproduction_in_eight_Candida_genomes NA CH408160.1 ATGGCTGCGTTCATTTTCGTCACTGTATTTGCCAGAAATGTCGAGATGCTTTTTGTTGGTCAAATTCTCAATGGCTTTCCCTGGGGGTTCTTTTGCGTCATTGGGTTGATTTATGCTTCCGAAGTTGCCCCATTGCCTCTTCGTGGTTTCTTATCGGCGTACGTTATGATGTGCTGGGCTACTGGTGAAATCATTGCTGCGGCGGTGTTGAAAGCTATGCTTAACAACACTACTCAATGGGCTTATAGGTTGCTTTTTGCTATACAATGGGTCTGGATACCTCCCAATTTTATTTTGACTTTACTTTGTCCTGATTCACCCTACTGGCTCATTCGTAAAGGAAGGGTAGAAGATGCAGAAAAGTCATTGAAGAGACTTTCATCGAAGGCTGTTCACCCAAACATTAAGCGGAAGTTGCAACTTTTAATCGATACCAATGAATTGGAATTGAAACAAGCGTCTGAGTTCGATGATCGCTTCAAAGGTTGGAAATCATATGTCGAGTGTTTCAAAGGTCCCAATAGAAAGAGAACAGAAATTGCTTGTATGTCCCTTGCAGGGCAAGTTTTGGGAGGTAACAACTTTGCTTACTCTCCTTCATACTTCTTCTCCCAGGTGGGATTGAATAGCACACAAACGTACAACTTGAATTTAGGTATCACTGGACTTGCGTGGGTTGGTAATTTCGTTTCGTGGTTCGTTATTGCAAAAGTTGGCAGACGAAAGATCTACATTACTGGTATTTCCTTTATGACTATCTTTCTATTACTAATTGGAATCTTACAGACTCCAGCAGACAAAAACCCACTGGTAGCATGGGCACAAGTTGGTTGCATCTTTGGATGGGTTGTATCATTTGTCTTGACTCTTGCACCCTTAGCGTACACCATTTTGGGCGAGGTCTCTAGTACCAGGTTAAGATCCCAATCGATTGCAATTGGAAGAAATGCCTACACTCTCTGTCAGTTGACGGCTCAGGTGGTACAGCCATATTTCATGAATCCTGGTAATTTGGGATTGAAAGGAAGGACAGGTTTCATATGGTTCGGAACCAGCTTTCTTACTCTCATATGGGCAATTTTCCGTCTACCAGAAACCAAAGACCGCACCTACGAGGAATTGGATATCCTTTTTGAGAGAAAAGTTCCACTTACCAAGTTTGCTAGTTACAAACTTGATATTAATGATGAAATGAAATGTTGA > 836 PGUG_05340 NA hypothetical_protein EDK41242.2 12 MFTVPDSWLLENHFQGKKLTQLVVGLSALSIFFFGYDQGMMAGVNTSPDYVDKMKFGYYDSAGDVTVTNSTKQGGIVAIYYFGTLVGCLFGGFSSDRYGRIRAIGLGAAVAIFGAALQCSATQVSWMCGARFVNGIGTGILNAVVPVYSSETAEHTSRGAFIAIEFTLNIFGVVVAYWLEYGLSYIDNGFTAFRWRFPIAFQIIPLLVLLAITWFFPESPRWLIKNNERGRAKKLLISMRGEARGEEEFDQICEAMEFEEDSALTGNYFRMFFDYVKTNDLEQRKKAKSLHIARRIQIVIWLQIMQEWVGIAGVTVYQPEIFKQAGYTTRKSAWLSGLNNIFYMFATLINYFTVDRWGRRFTLYWGAIGQGIAMFLAGGFSKLQQQNPENKSYGAAAAAFVFIFTSVFGATWLAVPWLYPTEIFPLKVRAQGNAFGVVGWSIGNGWLTLLCPVMFSNIQEKTLYIFGACNFISIVLVYLFCPETANRTLEDIDFLFASNSWLASSAENEFIAFQYARDKAGMHSIARSQTNDKVAIEETEHASASS Saccharomycetes Meyerozyma_guilliermondii_ATCC_6260 Meyerozyma_guilliermondii_ATCC_6260_(Pichia_guilliermondii_ATCC_6260) CH408161 306732..308372 Butler,G.,_Rasmussen,M.D.,_Lin,M.F.,_Santos,M.A.,_Sakthikumar,S.,_Munro,C.A.,_Rheinbay,E.,_Grabherr,M.,_Forche,A.,_Reedy,J.L.,_Agrafioti,I.,_Arnaud,M.B.,_Bates,S.,_Brown,A.J.,_Brunke,S.,_Costanzo,M.C.,_Fitzpatrick,D.A.,_de_Groot,P.W.,_Harris,D.,_Hoyer,L.L.,_Hube,B.,_Klis,F.M.,_Kodira,C.,_Lennard,N.,_Logue,M.E.,_Martin,R.,_Neiman,A.M.,_Nikolaou,E.,_Quail,M.A.,_Quinn,J.,_Santos,M.C.,_Schmitzberger,F.F.,_Sherlock,G.,_Shah,P.,_Silverstein,K.A.,_Skrzypek,M.S.,_Soll,D.,_Staggs,R.,_Stansfield,I.,_Stumpf,M.P.,_Sudbery,P.E.,_Srikantha,T.,_Zeng,Q.,_Berman,J.,_Berriman,M.,_Heitman,J.,_Gow,N.A.,_Lorenz,M.C.,_Birren,B.W.,_Kellis,M._and_Cuomo,C.A. NA 0:1641 NA NA 10-JUN-2009 Pichia_guilliermondii_ATCC_6260_scaffold_7_genomic_scaffold,_whole_genome_shotgun_sequence. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pichia_guilliermondii_A5DPY9_PICGU.gb Meyerozyma_Kurtzman_&_M._Suzuki_2010 61652204 Nature_459_(7247),_657-662_(2009) fungi CH408161 hypothetical_protein NA budding_yeasts sac_fungi 19465905 1641 NA genomic_DNA NA ATCC_6260 NA Yamadazyma_guilliermondii NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 294746 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Meyerozyma Evolution_of_pathogenicity_and_sexual_reproduction_in_eight_Candida_genomes NA CH408161.1 TTAACTTGAGGCCGATGCGTGTTCGGTCTCTTCGATCGCCACCTTATCATTAGTCTGGCTGCGAGCAATTGAGTGCATTCCAGCCTTATCTCTGGCATATTGGAAAGCAATAAATTCATTTTCAGCCAGCGACGCTAACCAACTATTGGATGCAAACAAGAAATCTATATCCTCCAATGTTCTGTTGGCTGTTTCTGGGCAGAACAAGTAAACAAGAACAATTGAAATAAAGTTGCATGCACCAAAGATGTATAGAGTTTTCTCTTGGATATTGCTGAACATTACCGGACAAAGAAGTGTTAACCATCCATTACCAATTGACCATCCCACAACCCCAAAAGCATTACCCTGTGCTCTTACTTTCAATGGAAAAATTTCCGTTGGGTACAACCAAGGCACTGCCAACCAAGTGGCTCCGAAAACCGAAGTGAAGATAAACACGAATGCTGCAGCTGCAGCACCATAAGACTTATTCTCTGGATTTTGTTGCTGAAGCTTCGAGAATCCACCTGCCAAAAACATGGCAATACCTTGTCCAATCGCTCCCCAGTAAAGGGTAAAACGACGTCCCCATCTATCAACAGTGAAGTAATTGATCAAAGTTGCAAACATGTAAAAGATATTATTCAATCCAGATAACCAAGCCGACTTTCTTGTCGTGTAACCTGCCTGCTTGAAAATCTCCGGTTGGTATACGGTTACACCAGCAATTCCAACCCATTCTTGCATAATTTGCAACCAAATAACGATTTGAATTCTTCGGGCAATGTGAAGGCTCTTGGCTTTCTTTCTTTGCTCGAGGTCATTGGTCTTAACATAGTCAAAGAACATTCTGAAATAGTTACCAGTTAAAGCTGAGTCTTCTTCGAATTCCATTGCTTCACAAATTTGGTCGAATTCTTCCTCACCTCGAGCCTCACCTCTCATACTAATAAGCAATTTCTTGGCCCTGCCCCGCTCGTTATTCTTAATGAGCCATCTTGGAGACTCTGGGAAAAACCAGGTAATTGCCAAAAGTACTAATAACGGAATGATCTGAAACGCAATTGGGAATCTCCATCTAAATGCAGTAAACCCATTATCGATATAACTCAAACCATATTCCAACCAGTAAGCAACTACCACTCCAAAAATGTTCAACGTGAATTCAATGGCAATAAAAGCACCTCGAGAAGTATGTTCAGCCGTTTCTGACGAATAAACCGGAACAACAGCATTCAAGATACCGGTTCCAATACCATTCACAAATCTAGCACCACACATCCAAGACACCTGAGTAGCAGAACACTGAAGTGCTGCTCCGAAGATAGCTACGGCAGCACCCAATCCAATAGCTCTAATTCTTCCGTACCTGTCAGAACTGAATCCACCAAAAAGACATCCAACGAGAGTACCAAAGTAGTATATTGCAACAATACCACCTTGCTTGGTTGAGTTGGTCACTGTGACATCACCTGCCGAGTCATAGTATCCAAATTTCATTTTGTCAACGTAATCGGGCGACGTGTTGACTCCAGCCATCATACCTTGATCATAACCAAAAAAGAAGATTGATAACGCTGAAAGACCCACAACTAGTTGTGTGAGTTTCTTACCTTGAAAATGGTTCTCTAGTAACCATGAATCTGGGACAGTGAACAT > 837 PICST_39416 Quinate_permease_(Quinate_transporter)_similarity_to_GXS1 Quinate_permease_(Quinate_transporter) XP_001387144.1 12 MSIEKLNNVVAVSSQVEEKQKVKFRWRVADDHSPKEIYNKTLFLSVLVFGILGAARGTDEGTVAGAMHQPSFKHLFGLSDKSKSEHEIADLKSNIAAMVQLGSVGGAILAMYTVDKLGRVRAVQQVCVIWIIGAIIQMTSRNVGQLYAGRLIEGFAIGQTTTIGPTYMSEVAPPAYRGLFGCLFSGAVYLGIFLSYSVNYATAKHMSGSTNSQWMIPLCLKFIFSGFVFIGSLFSYESPRWLLKVGKNDRALKSLCKLRQLPPDHPYIVGEINDINEQVFAEREATSNYSVWQKFRDLVTVKSISYRFFVIGFMSQLLGQWSGANAITIYAGDLFSYAGIKGVEVMKMTVILGVIKFCSAYFSAFFIIDFLGRRKALYIGITIQMISILFFAIFLQIVPHATEEGWTLSPSEKAASKAAMAALYISGIGWTMGFNSVQYLLGSEIFPLKLRSFGQSLIMVFHFANQYGNSKAVPKMLISLKKYGAFYFFTVVCAMSLFWSWFFIPEISGRSLESMEEVFNLPWYLVGRKGAILCPDTSAVGKITHLADRGSVEILEDLERQKGEEELLENASDEDKNNKYK Saccharomycetes Scheffersomyces_stipitis_CBS_6054 Scheffersomyces_stipitis_CBS_6054_(Pichia_stipitis_CBS_6054) XM_001387107 NA Jeffries,T.W.,_Grigoriev,I.V.,_Grimwood,J.,_Laplaza,J.M.,_Aerts,A.,_Salamov,A.,_Schmutz,J.,_Lindquist,E.,_Dehal,P.,_Shapiro,H.,_Jin,Y.S.,_Passoth,V._and_Richardson,P.M. NA 0:1746 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_009068).URL_--_http://www.jgi.doe.gov/pichiaJGI_Project_ID:_3634480Source_DNA_was_provided_by_Jose_Laplaza_and_Thomas_Jeffries(twjeffri@wisc.edu)Stock_culture_is_available_from_Cletus_P_Kurtzman(kurtsman@ncaur.usda.gov)Contacts:_Thomas_Jeffries_(twjeffri@wisc.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Annotation_done_by_JGI-PGFManual_curation_done_by_the_P._stipitis_User_CommunityFinishing_done_by_JGI-Stanford_Human_Genome_Center(www-shgc.stanford.edu)The_chromosome_includes_the_telomere_sequences_and_has_a_gap_ofunknown_size_at_the_centromere._The_sequence_has_less_than_oneerror_in_100,000_bp.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_incomplete_on_both_ends. NA 07-OCT-2010 Scheffersomyces_stipitis_CBS_6054_chromosome_1. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pichia_stipitis_A3GHV7_PICST.gb Scheffersomyces_Kurtzman_&_M._Suzuki_2010 126258066 Nat._Biotechnol._25_(3),_319-326_(2007) fungi XM_001387107 NA NA budding_yeasts sac_fungi 17334359 1746 1 mRNA NA CBS_6054 NA Yamadazyma_stipitis NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 322104 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Scheffersomyces Genome_sequence_of_the_lignocellulose-bioconverting_and_xylose-fermenting_yeast_Pichia_stipitis NA XM_001387107.1 ATGAGTATTGAAAAGCTCAATAACGTTGTTGCAGTAAGCTCGCAAGTGGAAGAAAAGCAAAAGGTGAAGTTCAGATGGAGAGTTGCAGATGACCACTCACCGAAAGAAATCTATAACAAGACTCTTTTCCTTTCTGTCTTGGTTTTTGGTATTCTTGGTGCTGCTAGAGGAACAGATGAAGGTACCGTAGCTGGTGCCATGCATCAGCCCTCTTTCAAGCATCTCTTTGGTTTATCTGATAAAAGCAAGTCGGAACATGAAATTGCAGACTTGAAGTCCAATATTGCAGCAATGGTTCAGTTAGGTTCTGTTGGAGGTGCCATTCTTGCAATGTATACTGTTGATAAGTTAGGCAGAGTTAGAGCTGTGCAACAAGTTTGCGTTATTTGGATCATTGGTGCAATTATTCAAATGACTTCAAGAAATGTAGGACAGTTATATGCGGGTAGATTAATCGAGGGTTTCGCTATTGGACAGACTACAACTATCGGTCCAACATATATGTCTGAAGTTGCTCCACCAGCATACAGAGGTCTCTTTGGTTGTTTGTTCAGTGGTGCTGTGTACTTGGGTATTTTCCTTTCCTATTCCGTCAATTATGCTACAGCAAAACATATGTCAGGTTCTACTAACAGTCAGTGGATGATCCCTCTTTGTCTTAAATTCATCTTTTCCGGTTTTGTTTTCATTGGTTCGCTTTTCTCGTATGAGAGTCCTAGATGGTTACTTAAAGTTGGAAAGAATGACAGAGCTTTGAAGAGTTTGTGCAAACTCAGACAGTTGCCACCTGACCACCCATACATTGTTGGAGAAATTAATGATATTAATGAACAAGTATTCGCCGAAAGAGAAGCAACTTCCAATTATTCTGTGTGGCAAAAATTCAGGGACTTAGTTACAGTTAAGTCTATCAGCTACCGTTTCTTCGTCATTGGTTTCATGTCTCAATTGCTTGGACAATGGAGTGGAGCTAATGCCATTACGATTTATGCTGGTGACCTCTTTAGTTATGCTGGAATCAAAGGTGTTGAGGTTATGAAGATGACTGTTATCTTAGGTGTTATCAAGTTCTGTTCGGCTTACTTCAGTGCTTTTTTCATCATCGATTTCTTAGGTCGTAGAAAGGCACTTTACATTGGTATTACCATTCAAATGATTTCCATTTTGTTCTTTGCAATTTTTTTGCAGATCGTTCCCCATGCGACGGAAGAAGGTTGGACCTTATCTCCTTCTGAAAAAGCTGCTAGTAAAGCAGCAATGGCAGCCTTATATATTTCCGGTATTGGTTGGACCATGGGTTTCAACAGTGTTCAATATTTGCTTGGTTCGGAAATTTTCCCATTGAAGCTTCGTTCTTTCGGTCAATCTCTCATCATGGTGTTCCATTTTGCTAACCAATATGGTAACTCCAAAGCTGTACCAAAAATGTTGATCAGTCTTAAGAAGTATGGGGCTTTCTACTTTTTCACTGTTGTATGTGCAATGTCATTATTCTGGTCTTGGTTTTTCATTCCTGAAATTTCGGGTAGATCCCTTGAAAGTATGGAAGAAGTTTTCAACTTACCATGGTACTTGGTTGGTAGAAAGGGTGCTATCTTGTGTCCTGACACTTCCGCAGTTGGTAAGATTACACACCTCGCAGACCGTGGAAGTGTTGAAATCCTTGAAGACCTCGAAAGGCAGAAAGGCGAAGAGGAGTTATTGGAGAACGCTAGTGATGAAGACAAGAACAACAAGTACAAATAG > 838 PICST_35662 probable_hexose_transporter hexose_transporter XP_001383911.2 12 MIGTKDIKENNIITVSSKGYENGSLGQEEQRVLTLEDVTPKLDKWWFQYPHLLKLNVLLGCASLAQVTLGYDGSMMGNLQTLPSWSAYFNKPHGQILSTMTNGITIGAMAVTPFLTASGDRMKRKHVLAGAILLTILGAALQSASVNFGMFLAARMILGFGSGGMQVSAAPLLAETAYPSQRPILTSMLQAAFPVGSFMAALFTWGPYQSSMKYNNWSWRLPSLLQAVVPLIQLVLVYFCPESPRWLIAHGKEDEAFEILTKYHAGGDRNSELVKFEMAEISAAISREKIGKKVSWLTWFSSKANMHRLFITLALPSILQLCGSSLIAYYFSIVLQDIGITEPSDKLKINIGLTLFGGVCALVFAIYSAKWRRKVVMQVSLGGMCIIFIIWIVLADINEKTQFKNKALGRGIIALLYFDMGFYHAFSPIGNTYVMEIVPYTLRGKASILYSLASQVWIFFNNYVNNLGMDSIGWKYYIVYCILLFTHMVVIQFTFPETRGLGLEEVAKIFGEDISDLMFKAQQAIVEPESPTKRKAEVEHIEDTKSKTSET Saccharomycetes Scheffersomyces_stipitis_CBS_6054 Scheffersomyces_stipitis_CBS_6054_(Pichia_stipitis_CBS_6054) XM_001383874 NA Jeffries,T.W.,_Grigoriev,I.V.,_Grimwood,J.,_Laplaza,J.M.,_Aerts,A.,_Salamov,A.,_Schmutz,J.,_Lindquist,E.,_Dehal,P.,_Shapiro,H.,_Jin,Y.S.,_Passoth,V._and_Richardson,P.M. NA 0:1656 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_009043).COMPLETENESS:_incomplete_on_both_ends. NA 06-JUL-2010 Scheffersomyces_stipitis_CBS_6054_hexose_transporter_partial_mRNA. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pichia_stipitis_A3LSD5_PICST.gb Scheffersomyces_Kurtzman_&_M._Suzuki_2010 126134772 Nat._Biotechnol._25_(3),_319-326_(2007) fungi XM_001383874 NA NA budding_yeasts sac_fungi 17334359 1656 3 mRNA NA CBS_6054 NA Yamadazyma_stipitis NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 322104 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Scheffersomyces Genome_sequence_of_the_lignocellulose-bioconverting_and_xylose-fermenting_yeast_Pichia_stipitis NA XM_001383874.1 ATGATTGGAACAAAAGATATTAAAGAAAATAACATTATAACAGTCAGCTCTAAAGGCTATGAGAATGGCTCACTTGGGCAAGAAGAACAAAGAGTTCTTACTTTGGAAGACGTCACCCCAAAATTAGACAAATGGTGGTTCCAGTACCCTCATTTGTTAAAATTGAACGTATTGTTAGGATGTGCGCTGCTTGCTCAGGTTACTTTAGGTTATGATGGTAGTATGATGGGTAATTTGCAAACATTACCAAGTTGGTCAGCATATTTCAATAAACCACATGGTCAAATTTTGAGTACTATGACGAATGGTATCACCATTGGAGCAATGGCTGTTACTCCATTTTTGACTGCTAGTGGTGACAGAATGAAAAGAAAACATGTACTTGCAGGTGCAATTCTATTGACTATTCTTGGTGCTGCATTGCAGTCTGCTTCAGTTAATTTTGGTATGTTTCTCGCTGCACGTATGATTCTTGGTTTTGGTTCTGGTGGAATGCAAGTTTCTGCTGCTCCATTGTTGGCAGAGACAGCTTACCCATCTCAGAGACCTATTTTGACAAGTATGTTGCAGGCTGCCTTTCCAGTAGGTTCATTCATGGCAGCACTTTTTACTTGGGGTCCTTATCAATCTAGTATGAAGTACAACAACTGGTCATGGCGCTTACCTTCGTTGCTTCAAGCTGTTGTTCCATTAATCCAACTAGTATTAGTTTATTTCTGTCCAGAATCTCCTAGATGGCTAATTGCACACGGGAAAGAAGACGAAGCTTTTGAAATTTTGACTAAATACCATGCTGGTGGTGACAGAAACAGTGAATTAGTTAAATTCGAAATGGCTGAAATTAGTGCTGCAATCTCCAGAGAAAAGATCGGCAAAAAGGTTTCTTGGTTGACATGGTTTTCATCAAAAGCAAATATGCATAGATTATTTATCACGCTTGCATTGCCATCGATTCTTCAATTGTGTGGTTCCTCGCTTATTGCTTATTATTTCTCAATTGTTCTTCAGGATATTGGTATTACCGAGCCAAGTGACAAGTTAAAGATTAATATTGGTTTAACACTTTTTGGTGGTGTTTGTGCACTTGTTTTTGCTATTTATTCTGCTAAGTGGAGACGGAAAGTTGTAATGCAAGTTTCTCTTGGTGGAATGTGCATAATATTCATTATTTGGATAGTGTTGGCAGACATAAACGAAAAAACACAATTCAAGAATAAGGCATTGGGTCGGGGAATTATTGCACTCCTCTATTTCGATATGGGATTTTATCATGCTTTCTCTCCAATTGGAAACACATATGTTATGGAAATTGTCCCTTATACTTTGAGAGGAAAAGCTTCTATATTGTATTCCTTGGCAAGTCAAGTTTGGATTTTTTTCAACAACTACGTGAACAATCTTGGAATGGATTCCATTGGATGGAAATACTATATTGTTTACTGTATTTTATTGTTCACGCATATGGTCGTGATTCAATTCACCTTCCCAGAAACTAGAGGATTGGGATTGGAAGAGGTTGCAAAGATCTTCGGAGAAGATATTTCTGACTTGATGTTCAAAGCTCAACAAGCTATTGTTGAACCAGAATCACCAACAAAGAGGAAGGCTGAAGTGGAGCACATTGAAGATACTAAATCTAAGACATCGGAAACATAA > 839 PICST_33078 NA putative_xylose_transporter XP_001385962.2 12 MTERSIGPLIPRNKHLFYGSVLLMSIVHPTIMGYDSMMVGSILNLDAYVNYFHLTAATTGLNTAAVWLGQVIATLTVISYFNDKFGRRSSVCISIAISLVGVALQSAAQNIEMFIIGRIVIGFGISIGFVSSTILVSELAPPDKRGFILGLSFTSFLVGSLIAAGVTYGTRNAPGDWCWRIPSIIQGAPDIVAIINILFISESPRWLIAKERFSEAREIISIISDVPIEDAHEECEKIHAHIQTEKTAFPGNKWKQMVSSKSNTRRVIILFTQAIVTEMAGSSVGSYYFSIILTQAGVKDSNDRLRVNIVMSSWSLVIALSGCLMFDRIGRKMQSLISLSGMIICFIVLGVLVKEYGDGHSKSGSYAAVAMMFLFTGFYSFTFTPLNSLYPPELFPYVLRSTGVTLFNIFNGCWGLFASFILPIAMNGIGWKFYIINACYDVIFLPIIMFCWIETKGINLDTISEVLHGRGPEDEESIEESHSLIRQGFVVNTKK Saccharomycetes Scheffersomyces_stipitis_CBS_6054 Scheffersomyces_stipitis_CBS_6054_(Pichia_stipitis_CBS_6054) XM_001385925 NA Jeffries,T.W.,_Grigoriev,I.V.,_Grimwood,J.,_Laplaza,J.M.,_Aerts,A.,_Salamov,A.,_Schmutz,J.,_Lindquist,E.,_Dehal,P.,_Shapiro,H.,_Jin,Y.S.,_Passoth,V._and_Richardson,P.M. NA 0:1488 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_009046).COMPLETENESS:_incomplete_on_both_ends. NA 06-JUL-2010 Scheffersomyces_stipitis_CBS_6054_xylose_transporter_partial_mRNA. NA Debaryomycetaceae_Kurtzman_et_M._Suzuki_2010 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pichia_stipitis_A3LY79_PICST.gb Scheffersomyces_Kurtzman_&_M._Suzuki_2010 126138877 Nat._Biotechnol._25_(3),_319-326_(2007) fungi XM_001385925 NA NA budding_yeasts sac_fungi 17334359 1488 6 mRNA NA CBS_6054 NA Yamadazyma_stipitis NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 322104 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Debaryomycetaceae,_Scheffersomyces Genome_sequence_of_the_lignocellulose-bioconverting_and_xylose-fermenting_yeast_Pichia_stipitis NA XM_001385925.1 ATGACGGAAAGAAGCATTGGACCTTTAATCCCCAGAAATAAGCACTTATTCTATGGATCCGTATTATTGATGAGTATTGTTCACCCAACTATCATGGGATACGATTCCATGATGGTTGGTAGTATTCTTAATCTAGATGCATATGTAAATTATTTCCACTTAACGGCTGCTACCACTGGACTCAATACTGCTGCAGTATGGCTTGGGCAAGTAATTGCCACATTGACAGTTATTCTGTATTTCAATGACAAATTTGGTAGAAGAAGTTCAGTTTGTATAAGTATTGCAATCAGTTTGGTTGGGGTTGCATTGCAATCAGCAGCCCAAAACATTGAGATGTTTATTATCGGAAGAATAGTTATTGGTTTTGGAATATCTATTGGTTTTGTCTCATCTACCATTTTGGTAAGTGAACTAGCCCCTCCAGACAAAAGAGGATTTATTCTTGGATTGAGTTTTACAAGCTTTCTAGTAGGAAGTTTAATTGCAGCAGGTGTCACATATGGAACAAGAAATGCTCCTGGAGACTGGTGTTGGAGAATCCCATCAATTATTCAAGGGGCTCCAGATATTGTTGCTATTATTAACATACTCTTTATTTCAGAATCACCAAGGTGGTTGATTGCAAAGGAAAGATTCAGCGAAGCTCGTGAAATTATTTCTATCATTAGTGATGTTCCTATTGAAGATGCACATGAAGAATGTGAAAAGATACATGCCCATATTCAAACTGAGAAGACTGCTTTCCCTGGCAATAAGTGGAAACAAATGGTGAGCTCCAAGAGCAATACAAGAAGAGTTATTATCTTGTTCACACAGGCCATAGTTACTGAAATGGCCGGTTCTTCAGTTGGATCGTACTATTTTTCAATTATATTAACTCAAGCTGGGGTCAAAGATTCGAATGATAGACTAAGAGTAAATATTGTGATGAGTTCGTGGTCATTGGTAATTGCTCTTTCCGGATGTCTAATGTTTGACAGAATTGGAAGAAAAATGCAATCGCTCATTTCGTTATCAGGTATGATCATATGCTTTATAGTTTTAGGTGTTTTGGTTAAAGAATATGGCGATGGTCATAGCAAGAGCGGAAGTTACGCAGCTGTCGCCATGATGTTTTTATTCACAGGATTTTACTCATTCACTTTCACTCCATTGAACTCTTTGTACCCTCCAGAATTGTTCCCCTACGTGTTGAGAAGTACAGGAGTTACACTCTTTAATATTTTCAACGGCTGCTGGGGACTTTTCGCAAGTTTCATTTTACCCATTGCAATGAATGGAATTGGCTGGAAATTTTACATCATTAATGCTTGCTATGACGTCATATTCCTTCCAATAATAATGTTCTGTTGGATTGAGACAAAGGGAATTAATTTGGATACAATTAGTGAAGTATTGCACGGAAGAGGACCTGAAGATGAAGAAAGCATTGAAGAAAGTCACAGCCTAATCAGACAAGGTTTTGTTGTTAATACAAAGAAGTAA > 840 PTO1251 NA sugar_transporter YP_024029.1 11 MEYVSYHGNPVKFMRRITILSSMGIVMDGYTLTVFSYALLYLIPEMHLSSYEISIMGISSIMGVFVGSVIFGHLADKYGRKSIYLYDLIFVSIFIFITGFSVNYIEFSIFQFLAGIGIGADYPVSSSIQAEYSPQEKRGKYLVFNIFSFSIGSLIFLIVAIPLVLFTGPYAWRYMYIIGAVFPLIVLFSRNSLEETPYWLKEKFGDNALKNLDKKIESETGFHFMGIPELEKGKSKLSDIFSKKYILMTIFVSIAWFSYDVVSYGIWTYSPLIFSTQISSVYTNLYVVFSGMAESVPVFIGFIIAIYYVERIGRRPLLIIGFLGSLIVLISFFFINEFISITFLFTFSAFGLVHFFHNIGPSPMTYDYPVEIFPTRIRASAMGFSTSFSRLGSILAVFSFPFIDALFGLKAIVIYFAAFEFIGLIITILLAPETKNTPLK Thermoplasmata_Reysenbach_2002 Picrophilus_torridus_DSM_9790 Picrophilus_torridus_DSM_9790 NC_005877 1257740..1259062 Futterer,O.,_Angelov,A.,_Liesegang,H.,_Gottschalk,G.,_Schleper,C.,_Schepers,B.,_Dock,C.,_Antranikian,G._and_Liebl,W. NA 0:1323 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE017261.COMPLETENESS:_full_length. NA 21-JAN-2012 Picrophilus_torridus_DSM_9790_chromosome,_complete_genome. NA Picrophilaceae_Schleper_et_al._1996 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Picrophilus_torridus_Q6KZL6_PICTO.gb Picrophilus_Schleper_et_al._1996 48477072 Proc._Natl._Acad._Sci._U.S.A._101_(24),_9091-9096_(2004) NA NC_005877 NA NA Thermoplasmatales_Reysenbach_2002 not_Euryarchaeota_Cavalier-Smith_2002 15184674 1323 NA genomic_DNA NA DSM_9790 NA Picrophilus_torridus_Zillig_et_al._1996 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 263820 Archaea,_Euryarchaeota,_Thermoplasmata,_Thermoplasmatales,_Picrophilaceae,_Picrophilus Genome_sequence_of_Picrophilus_torridus_and_its_implications_for_life_around_pH_0 NA NC_005877.1 ATGGAATATGTTAGTTATCATGGAAATCCTGTAAAATTCATGAGAAGAATAACCATACTCTCATCAATGGGTATAGTTATGGATGGTTATACATTAACCGTTTTTTCATATGCCCTTTTATATTTAATACCGGAGATGCATCTGTCCAGCTATGAGATCTCAATAATGGGTATATCATCAATAATGGGTGTCTTTGTTGGAAGTGTAATATTTGGCCATCTTGCAGATAAATATGGCAGAAAATCAATATACTTATACGATTTAATCTTTGTTTCCATATTTATCTTCATAACAGGATTTTCTGTAAATTACATAGAGTTTTCAATTTTCCAGTTTCTGGCAGGAATAGGCATAGGTGCGGATTATCCTGTGAGCTCATCAATACAGGCTGAATATTCACCTCAGGAAAAGCGTGGCAAATACCTTGTCTTTAATATATTTTCATTCTCCATAGGCTCTTTAATATTTTTAATAGTTGCAATACCCCTTGTGCTTTTCACCGGCCCATATGCATGGCGCTATATGTATATTATAGGTGCTGTTTTTCCATTAATAGTTCTCTTCTCAAGGAACAGTCTTGAGGAGACGCCGTACTGGCTGAAGGAAAAATTCGGTGACAATGCACTTAAAAACCTCGACAAAAAAATAGAGAGCGAAACCGGTTTCCATTTCATGGGCATTCCGGAGCTGGAAAAGGGTAAAAGTAAATTATCCGATATATTCAGCAAAAAATACATATTAATGACAATCTTTGTTTCAATAGCATGGTTCTCATATGATGTTGTCAGCTATGGTATATGGACATATTCACCTTTAATATTCTCAACGCAGATAAGCTCTGTTTACACCAATTTATACGTTGTTTTTTCAGGTATGGCAGAATCCGTTCCTGTTTTTATCGGCTTTATAATAGCCATATACTATGTTGAGCGCATCGGCAGGAGGCCGCTTTTAATAATTGGCTTTTTGGGCTCATTGATAGTTCTTATATCATTCTTTTTTATAAATGAATTTATATCAATAACGTTTTTATTCACATTCAGCGCCTTCGGACTGGTTCACTTCTTCCATAATATAGGACCAAGCCCAATGACGTATGATTATCCTGTTGAAATATTTCCGACAAGAATAAGGGCAAGTGCCATGGGCTTTTCAACATCATTTTCAAGGCTCGGATCAATACTTGCCGTATTTTCATTTCCATTTATCGATGCGCTGTTTGGTCTTAAGGCAATAGTAATATACTTTGCAGCCTTTGAATTCATAGGCTTAATTATAACCATTTTGCTTGCGCCTGAGACAAAAAATACACCATTAAAATAA > 841 PM8797T_14941 COG0477_Permeases_of_the_major_facilitator_superfamily major_facilitator_family_transporter EDL58754.1 11 MSTVAPRMKPEETDTKKIRVLAAGFIGNILEWYDFAVYGFFAPTIGKLFFPSEDPRVSLIAAFGAFAAGFLMRPVGAVLFGHIGDRIGRKKALTLSVLMMAIPTMLVGILPTHAQIGMYAAIMMVLLRMIQGISVGGEYTSSFVFLVEHAPAGRRAFFGSWSMIGATCGILLGSAVGALINTFTTNEQLMDWGWRIPFLAGVLVAFVGYFIRHGIPDQPIAEELSEQEAYSPLKQAWASYKTELLQSAGLNMMNAVTFYTVFIYLSTWLVEEVGETRAEALDINTISMAALTVMVPFAAMLADKYGRKPLLLFGAAGVTLFSYPLLWLMHHQHYQMILAGQIGFAVLVACFAGAIPATITELFKRGVRVSAASVSYNIPFAIFGGTAPMVAAWLVHSTGNPLSIAWYLSGIAAISFCITLTIKETRHNSLEE Planctomycetia Planctomyces_maris_DSM_8797 Planctomyces_maris_DSM_8797 ABCE01000021 71504..72802 Amann,R.,_Ferriera,S.,_Johnson,J.,_Kravitz,S.,_Beeson,K.,_Sutton,G.,_Rogers,Y.-H.,_Friedman,R.,_Frazier,M._and_Venter,J.C. NA 0:1299 Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation. NA 15-JUN-2007 Planctomyces_maris_DSM_8797_1101493009158,_whole_genome_shotgun_sequence. NA Planctomycetaceae_Schlesner_and_Stackebrandt_1987 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Planctomyces_maris_A6C984_9PLAN.gb Planctomyces_Gimesi_1924 148844339 Submitted_(08-JUN-2007)_J_Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ABCE01000021 NA NA planctomycetes Planctomycetes_Garrity_and_Holt_2001_emend._Ward_2011 NA 1299 NA genomic_DNA NA DSM_8797 NA Planctomyces_maris_(ex_Bauld_and_Staley_1976)_Bauld_and_Staley_1980 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 344747 Bacteria,_Planctomycetes,_Planctomycetia,_Planctomycetales,_Planctomycetaceae,_Planctomyces Direct_Submission NA ABCE01000021.1 TCATTCCTCCAGTGAATTGTGGCGGGTTTCTTTGATAGTGAGGGTGATACAGAAGGAAATCGCGGCGATGCCGGAGAGGTACCAGGCGATGGAGAGCGGATTACCGGTCGAATGGACGAGCCAGGCAGCGACCATGGGGGCAGTGCCTCCGAAGATCGCAAACGGAATATTATAGCTCACGCTGGCCGCACTGACGCGAACGCCACGTTTGAAGAGTTCGGTAATCGTCGCAGGGATGGCACCGGCGAAACAGGCGACGAGAACAGCAAAGCCGATCTGTCCGGCGAGGATCATCTGGTAATGCTGGTGGTGCATCAGCCATAATAGAGGATACGAAAACAGTGTCACTCCGGCTGCGCCAAACAGCAGTAGTGGTTTGCGACCATATTTATCGGCGAGCATTGCTGCGAACGGAACCATCACAGTTAAAGCAGCCATGCTGATGGTATTGATGTCGAGTGCCTCCGCGCGGGTTTCGCCCACTTCTTCTACCAGCCAGGTGGAAAGATAAATGAAGACGGTATAAAAGGTGACCGCGTTCATCATATTCAGGCCGGCTGACTGCAGCAGTTCTGTTTTATAGCTGGCCCAGGCCTGTTTGAGAGGTGAGTAGGCTTCCTGTTCAGAGAGTTCTTCTGCAATCGGCTGATCGGGGATGCCATGCCGGATGAAATAACCGACGAACGCGACGAGCACACCAGCGAGGAATGGAATCCGCCAGCCCCAGTCCATGAGTTGCTCATTCGTGGTAAACGTGTTGATTAACGCACCGACGGCGGAGCCAAGCAGAATGCCGCAGGTGGCGCCGATCATACTCCATGAACCAAAAAAGGCACGCCGTCCTGCAGGCGCGTGTTCGACGAGGAAGACGAACGAACTGGTATATTCTCCGCCGACCGAAATGCCCTGAATCATTCGGAGTAGAACCATCATGATCGCAGCGTACATACCGATCTGAGCGTGTGTGGGAAGGATGCCCACGAGCATGGTGGGAATCGCCATCATCAACACTGAAAGGGTCAGTGCTTTCTTACGGCCGATGCGATCGCCGATGTGACCGAACAGCACGGCGCCGACCGGTCGCATTAAAAATCCGGCAGCGAACGCACCGAAGGCAGCGATCAGCGAGACCCGGGGATCTTCCGACGGGAAGAAGAGTTTGCCGATGGTGGGTGCGAAAAATCCATAAACGGCGAAGTCGTACCACTCCAGAATATTGCCAATAAAGCCGGCCGCCAGGACCCGGATCTTTTTGGTATCCGTTTCTTCGGGTTTCATACGCGGAGCCACGGTCGACAT > 842 PODANSg1042 Predicted_CDS_Pa_5_2930 hypothetical_protein XP_001904025.1 NA MPKMKLPTIYNVHLVAIIATLGGALFGFDISSMSAIVVTNQYITYFNNPSGVIQGAIGSALAAGSVLGSAVAGPISDKIGRRDSIMFACLFWLIGTSVQVACQNVGQLIVGRVFNGFTVGITSAQVPVYLAEIAKAEKRGSLVIIQQLAIEFGILIMYFIGYACASIPGTASFRTAWGTQFIPCVLLIIGLPFLPRSPRWLAKVGRDEEAIRTLANIQADGNIEDPRVIAEWEEIVTVMNAEREAGKGWRKFFKNGMWKRTMAGMTVQAWQQLAGANVIVYYLTYIAQMAGLEGDVAMVTSGIQYAVFIIFTGVMWLFIDKTGRRTLLVWGALGMGFCHFVIGGVMGGNHTDVPGGVGNPPNANIVIAVHSGAPANTVITFSYLLIVVYALTLAPVCWIYAAEVWSLGTRATGMSMAALSNWVFNFALGMFTPPAFVNITWKLFIIFGALCVAAAIWFWVFYPETCGKTLEEIEVMFSKDGPRPWNTRKGESRLAAEIEAVIARKEKGEQPGLAETVTRDGENKA Sordariomycetes Podospora_anserina_S_mat+ Podospora_anserina_S_mat+ XM_001903990 NA Eric,Espagne.,_Olivier,Lespinet.,_Fabienne,Malagnac.,_Corinne_Da,Silva.,_Olivier,Jaillon.,_Betina,M.Porcel.,_Arnaud,Couloux.,_Beatrice,Segurens.,_Julie,Poulain.,_Veronique,Anthouard.,_Sandrine,Grossetete.,_Hamid,Khalili.,_Evelyne,Coppin.,_Michelle,Dequard.-Chablat.,_Marguerite,Picard.,_Veronique,Contamine.,_Sylvie,Arnaise.,_Anne,Bourdais.,_Veronique,Berteaux.-Lecellier.,_Daniel,Gautheret.,_Ronald,Pde.Vries.,_Evy,Battaglia.,_Pedro,M.Coutinho.,_Etienne,G.J.Danchin.,_Bernard,Henrissat.,_Riyad_El,Khoury.,_Annie,Sainsard.-Chanet.,_Antoine,Boivin.,_Berangere,Pinan.-Lucarre.,_Carole,H.Sellem.,_Robert,Debuchy.,_Patrick,Wincker.,_Jean,Weissenbach._and_Philippe,Silar. NA 0:1578 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001914837).COMPLETENESS:_incomplete_on_both_ends. NA 05-MAY-2010 Podospora_anserina_S_mat+_hypothetical_protein_(PODANSg1042)_partial_mRNA. NA Lasiosphaeriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Podospora_anserina_B2AED6_PODAN.gb Podospora 171678150 Unpublished fungi XM_001903990 NA NA pyrenonmycetes sac_fungi NA 1578 5 mRNA NA NA NA Podospora_anserina NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 515849 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Lasiosphaeriaceae,_Podospora The_Genome_Sequence_of_the_Model_Ascomycete_Fungus_Podospora_anserina NA XM_001903990.1 ATGCCCAAGATGAAGCTCCCCACTATCTACAATGTCCACCTCGTGGCCATCATCGCCACCCTGGGCGGTGCCCTTTTCGGCTTCGACATCTCGTCCATGTCGGCCATCGTCGTCACGAACCAGTACATCACCTACTTCAACAATCCCTCGGGCGTCATCCAAGGTGCCATCGGTTCCGCCCTCGCCGCCGGCTCCGTCCTCGGCTCTGCCGTTGCAGGCCCCATCTCGGACAAGATTGGCCGGAGGGACTCCATCATGTTTGCGTGCTTATTCTGGCTCATTGGGACATCTGTGCAGGTGGCCTGCCAAAACGTCGGCCAGCTGATCGTGGGCAGAGTGTTCAACGGATTCACGGTTGGTATCACGTCCGCTCAGGTGCCCGTGTACCTGGCCGAGATCGCCAAAGCGGAAAAGAGAGGGAGTCTGGTCATTATCCAGCAGCTCGCCATCGAGTTTGGCATTTTGATCATGTACTTTATCGGCTATGCGTGTGCGAGTATCCCGGGGACGGCAAGCTTCCGGACGGCGTGGGGGACGCAGTTTATCCCTTGCGTTCTCCTCATTATTGGGCTGCCCTTTCTGCCCCGGTCCCCCAGATGGTTGGCCAAAGTGGGGAGGGATGAAGAAGCGATCCGGACGCTGGCAAACATCCAGGCGGATGGCAATATTGAGGATCCGAGGGTGATTGCCGAGTGGGAAGAGATTGTCACAGTCATGAATGCGGAGAGGGAGGCTGGAAAGGGGTGGAGGAAGTTCTTCAAGAATGGAATGTGGAAGAGGACCATGGCGGGAATGACGGTACAGGCGTGGCAGCAACTGGCTGGTGCCAATGTCATTGTGTATTACCTGACATATATCGCCCAGATGGCCGGGTTAGAGGGCGATGTGGCCATGGTTACTTCGGGTATTCAGTATGCCGTCTTCATCATCTTTACAGGTGTCATGTGGCTTTTCATTGACAAGACTGGCCGTCGCACTCTCCTTGTCTGGGGAGCTCTTGGCATGGGCTTCTGCCACTTTGTCATCGGCGGTGTCATGGGTGGCAACCACACCGACGTTCCTGGTGGAGTTGGCAACCCCCCGAATGCCAACATTGTCATTGCTGTTCACTCGGGTGCCCCGGCCAACACTGTCATCACCTTCTCGTATCTCCTGATCGTGGTGTACGCCCTTACGCTGGCTCCAGTATGCTGGATCTACGCTGCTGAAGTGTGGTCCCTCGGCACCCGTGCCACAGGCATGTCGATGGCGGCTCTGTCCAACTGGGTCTTCAACTTTGCCTTGGGCATGTTCACGCCACCAGCTTTTGTCAACATTACCTGGAAGCTCTTTATCATCTTTGGCGCCTTGTGCGTTGCCGCGGCGATCTGGTTCTGGGTGTTTTACCCAGAGACCTGCGGTAAGACGTTGGAGGAGATTGAGGTCATGTTCTCTAAGGACGGGCCACGTCCGTGGAACACCAGAAAGGGCGAGTCTCGCTTGGCTGCCGAGATCGAGGCTGTCATTGCTAGAAAAGAAAAGGGGGAGCAGCCTGGTTTGGCTGAGACTGTCACGCGCGATGGCGAAAACAAGGCTTAG > 843 POSPLDRAFT_97659 NA hypothetical_protein XP_002477095.1 NA MAHKRFYLALGIQFMQQMTGICIVTYYTPTLFQVSLHMSQQMSLFLGCWVQTWYFIASLVTWYTIDRVGRRKLWITMAIGQMILLVLEAACVAIDNPASGAAAVCFIFLYETCFTWGWMATVWVYPPEILPLKIRAKGSALAAAADFLGNFLVVEITPPALQNIGWRTRPNSRVDR Hymenomycetidae Postia_placenta_Mad-698-R Postia_placenta_Mad-698-R XM_002477050 NA Martinez,D.,_Challacombe,J.,_Morgenstern,I.,_Hibbett,D.,_Schmoll,M.,_Kubicek,C.P.,_Ferreira,P.,_Ruiz-Duenas,F.J.,_Martinez,A.T.,_Kersten,P.,_Hammel,K.E.,_Vanden_Wymelenberg,A.,_Gaskell,J.,_Lindquist,E.,_Sabat,G.,_Bondurant,S.S.,_Larrondo,L.F.,_Canessa,P.,_Vicuna,R.,_Yadav,J.,_Doddapaneni,H.,_Subramanian,V.,_Pisabarro,A.G.,_Lavin,J.L.,_Oguiza,J.A.,_Master,E.,_Henrissat,B.,_Coutinho,P.M.,_Harris,P.,_Magnuson,J.K.,_Baker,S.E.,_Bruno,K.,_Kenealy,W.,_Hoegger,P.J.,_Kues,U.,_Ramaiya,P.,_Lucas,S.,_Salamov,A.,_Shapiro,H.,_Tu,H.,_Chee,C.L.,_Misra,M.,_Xie,G.,_Teter,S.,_Yaver,D.,_James,T.,_Mokrejs,M.,_Pospisek,M.,_Grigoriev,I.V.,_Brettin,T.,_Rokhsar,D.,_Berka,R._and_Cullen,D. NA 0:531 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002989183).COMPLETENESS:_incomplete_on_both_ends. NA 15-JUL-2009 Postia_placenta_Mad-698-R_predicted_protein,_mRNA. NA Coriolaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Postia_placenta_B8PN40_POSPM.gb Postia 242222787 Proc._Natl._Acad._Sci._U.S.A._106_(6),_1954-1959_(2009) fungi XM_002477050 NA NA Polyporales basidiomycetes 19193860 531 NA mRNA NA Mad-698-R NA Postia_placenta NA forward NA NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 561896 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Polyporales,_Postia Genome,_transcriptome,_and_secretome_analysis_of_wood_decay_fungus_Postia_placenta_supports_unique_mechanisms_of_lignocellulose_conversion NA XM_002477050.1 ATGGCTCACAAGCGCTTCTATCTCGCGCTCGGTATCCAGTTTATGCAGCAGATGACAGGTATCTGCATTGTGACATATTACACCCCGACATTGTTCCAAGTGAGCTTGCACATGTCGCAGCAGATGTCACTTTTCCTCGGTTGTTGGGTGCAGACATGGTACTTCATCGCTTCACTCGTCACGTGGTACACAATCGACCGCGTGGGCAGGCGGAAGCTGTGGATTACTATGGCCATTGGGCAAATGATTCTCCTCGTTCTCGAGGCTGCCTGTGTCGCAATTGACAATCCAGCCTCGGGTGCTGCCGCAGTCTGCTTTATCTTCCTCTACGAGACGTGCTTCACATGGGGTTGGATGGCGACGGTCTGGGTCTATCCCCCGGAGATCCTGCCACTGAAGATCCGTGCCAAGGGCTCGGCCCTCGCTGCTGCTGCTGACTTCCTCGGCAATTTCCTAGTCGTCGAGATCACGCCCCCGGCGCTGCAGAACATCGGCTGGCGCACCCGGCCAAACTCTCGAGTCGATCGATGA > 844 P9303_10171 COG2814_Arabinose_efflux_permease_carbohydrate_transport_and_metabolism proline/betaine_transporter_MFS_family_protein YP_001017031.1 11 MIVKAQETSNIRVILAGLVGNVIEWYDFALYGYFASVIGKQFFPSSNPSVSLIAAFGAFAVGFLVRPFGGLLFGRIADLLGRKQALILTLLAMAIPTVLMACMPNYSRIGIAAPIIIVLLRIIQGLSVGGEYTTSIVYLVENAPDKRRAFFAIWGLWGAVLGILLASAIASLLANILDPQQLDIWGWRVPFALGSLVALIGLLIRRGLVTDVCTEEAIDPVQQVFGKYRMQVLRLFLLNIGGGVGFYAAFVYVVSYVKEIDMVPERIALNINTVSMAILLILYPLTAWLSDRIGRKPLLIAGGGMLMFGSIPLFHLIHTTDPLRIFFGQLGFVIALATLSGGLNVANVELMPKAVRCTGLAFAYNTSMGIFGGTTPLIATWLIQGSGNPISPAYWLAGSASITLLTSIFWVRETRLSSLS NA Prochlorococcus_marinus_str._MIT_9303 Prochlorococcus_marinus_str._MIT_9303 NC_008820 926715..927977 Kettler,G.C.,_Martiny,A.C.,_Huang,K.,_Zucker,J.,_Coleman,M.L.,_Rodrigue,S.,_Chen,F.,_Lapidus,A.,_Ferriera,S.,_Johnson,J.,_Steglich,C.,_Church,G.M.,_Richardson,P._and_Chisholm,S.W. NA 0:1263 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000554.COMPLETENESS:_full_length. NA 19-JAN-2012 Prochlorococcus_marinus_str._MIT_9303_chromosome,_complete_genome. NA Prochlorococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Prochlorococcus_marinus_A2C8F6_PROM3.gb Prochlorococcus_Chisholm_et_al._2001 124021714 PLoS_Genet._3_(12),_E231_(2007) NA NC_008820 NA NA prochlorophytes cyanophytes 18159947 1263 NA genomic_DNA NA MIT_9303 NA Prochlorococcus_maritima NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 59922 Bacteria,_Cyanobacteria,_Prochlorales,_Prochlorococcaceae,_Prochlorococcus Patterns_and_implications_of_gene_gain_and_loss_in_the_evolution_of_Prochlorococcus NA NC_008820.1 ATGATCGTAAAGGCCCAAGAGACATCAAACATACGTGTGATACTCGCTGGTCTCGTTGGCAACGTGATCGAATGGTATGACTTCGCTTTGTATGGATACTTTGCCAGCGTTATTGGAAAACAGTTCTTTCCCTCTAGTAATCCTTCAGTCTCTCTAATTGCTGCTTTCGGAGCGTTTGCTGTCGGCTTTCTAGTTCGCCCTTTCGGAGGACTTTTGTTCGGACGTATTGCTGATTTGCTGGGACGAAAACAGGCGCTTATCCTTACCTTGCTGGCGATGGCTATCCCAACAGTGCTGATGGCCTGTATGCCCAACTACAGCAGGATTGGCATAGCTGCTCCGATCATAATCGTTTTGTTGCGTATTATCCAAGGATTATCAGTTGGCGGCGAGTACACAACATCAATTGTTTATCTCGTTGAGAATGCCCCTGATAAACGACGAGCCTTCTTTGCTATTTGGGGTCTATGGGGAGCAGTATTGGGAATCCTCTTGGCTTCTGCCATAGCCAGTTTGCTTGCCAATATTCTTGACCCTCAACAGCTAGACATCTGGGGTTGGAGAGTGCCTTTTGCGCTCGGTTCACTTGTCGCATTAATAGGACTTTTAATACGACGTGGTCTTGTAACTGATGTATGTACTGAAGAGGCAATAGACCCAGTACAGCAGGTTTTCGGCAAATACCGTATGCAGGTATTACGCTTGTTCTTGCTTAATATTGGTGGCGGTGTTGGCTTCTATGCAGCTTTTGTGTATGTTGTGAGTTACGTCAAGGAAATAGATATGGTGCCCGAACGAATAGCTCTGAATATAAATACAGTTTCTATGGCAATACTTTTAATACTTTATCCATTAACCGCTTGGCTTTCAGACCGCATTGGACGTAAGCCCTTGTTGATCGCTGGTGGTGGCATGTTGATGTTTGGCTCGATTCCACTTTTTCACTTGATTCACACCACTGATCCATTACGAATTTTCTTTGGGCAGCTCGGATTTGTGATTGCACTCGCAACTCTTTCAGGAGGATTAAATGTCGCGAATGTGGAGCTTATGCCTAAGGCGGTTCGCTGTACCGGCCTGGCCTTTGCCTACAACACTTCTATGGGGATTTTTGGTGGTACAACACCATTAATTGCGACCTGGTTAATTCAGGGAAGTGGAAATCCAATTAGCCCTGCTTACTGGTTAGCGGGCAGTGCTTCGATCACTTTATTAACAAGTATCTTTTGGGTTAGAGAAACGAGACTTTCAAGCCTGTCTTGA > 845 HMPREF9206_2116 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family_protein EFB89006.1 11 MSTSTTPKQSALDLIDSRPLTRNQKNLVALAVVGNISEFFDIFLIGFVVSVLTKPWNLTGTEAGVILACSGLGTVVGSIMWGRLADKIGRRSSFFWCVLLFVVFTVVSVFTPDRGWIMLAILRIGVGIGVGGLNITSIPYVQEFVPAKQRGLLAGLASVFIPLGLFLGSLAQNALGDNWRALIALGAIPVFLLVWIRFVPESPRFLQSHGRDKEAREALAWALDMPADDIGELPAVEHVQDASYSLVFGKYRKSLLIVSLGSFCFILGSFTIQSWGQTLLKTGFGKSPEQVGTLFMFVSLADLIGRFLSAWLADRIGRRATMLSFGLIGAGGTLIIALSARLGWGWQIFFVGVLIAMAFADGAFGILNAFGAEQFPNEARSTGLGLGYGIGATAKIIGPALMGLMVGGSAVKQNVTLDAVFPAFVLFAVLLIIGGMTYMFARETRGTSLDKI high_GC_Gram+ Propionibacterium_acnes_J139 Propionibacterium_acnes_J139 ADFS01000001 1273160..1274518 Durkin,A.S.,_Madupu,R.,_Torralba,M.,_Methe,B.,_Sutton,G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1359 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACCGenome_Coverage:_40xSequencing_Technology:_454. NA 30-DEC-2009 Propionibacterium_acnes_J139_contig00007,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_D1Y9T7_PROAC.gb Propionicibacterium 282582410 Unpublished NA ADFS01000001 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1359 NA genomic_DNA NA J139 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 679194 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Genome_Sequence_of_Propionibacterium_acnes_J139 NA ADFS01000001.1 TCAAATCTTGTCGAGCGAGGTGCCACGAGTTTCGCGGGCAAACATGTATGTCATACCGCCAATGATTAGCAGCACAGCGAACAGGACGAATGCCGGGAATACCGCGTCCAGGGTGACATTCTGCTTGACGGCAGATCCGCCCACCATGAGTCCCATAAGCGCCGGACCGATGATCTTGGCGGTGGCACCGATGCCGTAGCCCAGTCCCAGACCAGTCGAGCGAGCTTCGTTGGGGAATTGCTCGGCGCCGAAGGCATTGAGGATGCCGAAGGCGCCGTCGGCGAAGGCCATCGCAATGAGGACACCGACGAAGAAGATCTGCCAGCCCCAACCCAGGCGGGCCGAAAGGGCGATGATGAGAGTCCCGCCAGCACCGATGAGGCCAAACGACAACATGGTGGCCCTCCGACCAATGCGGTCTGCCAGCCATGCTGATAGGAAGCGTCCGATGAGATCGGCCAGGGAGACGAACATGAACAGGGTCCCGACTTGCTCGGGAGACTTGCCAAAGCCGGTCTTGAGCAGGGTCTGGCCCCACGACTGAATCGTGAAAGAGCCCAGAATGAAGCAGAATGATCCCAGACTGACGATGAGAAGACTCTTGCGATATTTACCAAAGACAAGTGAGTAGGAAGCGTCTTGGACGTGTTCAACGGCAGGCAACTCTCCAATGTCGTCAGCGGGCATATCGAGTGCCCAGGCTAGGGCCTCGCGTGCTTCCTTATCACGCCCATGACTCTGTAGGAACCGTGGTGATTCGGGCACGAAACGGATCCACACCAGCAGAAAAACAGGAATGGCGCCCAAAGCGATAAGGGCACGCCAATTATCGCCCAGTGCATTTTGTGCTAACGACCCCAAGAACAGACCGAGGGGGATGAATACCGACGCCAGGCCGGCGAGAAGACCGCGCTGCTTAGCAGGCACGAACTCCTGGACGTAGGGAATCGAGGTGATATTAAGTCCGCCGACTCCGATCCCTACGCCAATACGCAAAATGGCGAGCATAATCCAGCCACGATCTGGGGTGAACACAGATACTACAGTGAACACGACGAACAGGAGCACGCACCAGAAGAAAGAGGAGCGGCGTCCGATCTTGTCGGCAAGGCGTCCCCACATGATGGAACCGACGACCGTCCCCAGACCGGAACAGGCGAGAATGACGCCCGCCTCAGTGCCAGTCAGATTCCATGGCTTAGTCAGGACGGATACGACGAAACCAATGAGGAAGATGTCAAAGAACTCGGAGATATTTCCGACGACGGCTAGGGCAACAAGATTCTTCTGATTGCGTGTTAAGGGACGCGAATCGATGAGGTCTAGAGCTGATTGTTTGGGTGTTGTTGAGGTGGACAT > 846 HMPREF9206_1455 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 MFS_transporter,_sugar_porter_(SP)_family_protein EFB88371.1 11 MVDETPPSGKHRGIGALAAVATLGSLLFGYDTGVISGALPYLYMPHLAGGLALTPMQEGAIGGTLLIGAAIGAVTGGIMSDRWGRRHNITILAVIFLLGALGTTFSPNVFVMYVFRFVLGFAVGAASATVPVYLAENAPKRIRGSIVAIDQLMIVTGQLMAFSMNAIINAAHGGPQLIIKANNNPDSLGITKGTYSWDQILALQASKGGPLEGDRYRAFVENLVIQSGNGAAWRWMLVLCSIPAIALWIGIRLMPESARWYLAKGRVADAVGALKRVRDPQKDGPLDAEVEEMLVTQQRELENKYQGNAFAHVWRTPWLRKLMLVGIFLAIVNQTTGVNTVMYYAPKVLEYAGMTTSASITAQVANGVMSVIGSVGGLWLILKFSRRNLLIFDVSAVGITLLVIAGTFQFTIAPHIADKTTPPTWAPYLILGLMAVFMLIVQSTNGTVVWTMLGEMFPANVRGIMNGTAIFFMWVINAVITFTFPSMMASLGGGLTYTIYGMMNLVIAVVLFKIMPETRNKSLEQIETYMEERYS high_GC_Gram+ Propionibacterium_acnes_J139 Propionibacterium_acnes_J139 ADFS01000001 614503..616110 Durkin,A.S.,_Madupu,R.,_Torralba,M.,_Methe,B.,_Sutton,G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1608 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACCGenome_Coverage:_40xSequencing_Technology:_454. NA 30-DEC-2009 Propionibacterium_acnes_J139_contig00007,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_D1YAX5_PROAC.gb Propionicibacterium 282582410 Unpublished NA ADFS01000001 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1608 NA genomic_DNA NA J139 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 679194 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Genome_Sequence_of_Propionibacterium_acnes_J139 NA ADFS01000001.1 ATGGTTGATGAGACTCCTCCGTCCGGTAAACACCGGGGCATCGGGGCGCTTGCTGCCGTGGCGACCCTGGGGTCCCTACTCTTTGGATATGACACAGGTGTCATATCGGGGGCGCTTCCCTACCTGTACATGCCCCACCTGGCTGGCGGTCTCGCCTTAACACCGATGCAGGAGGGCGCCATCGGCGGCACACTCCTCATTGGGGCTGCAATTGGCGCCGTGACCGGCGGCATCATGTCCGATCGGTGGGGGCGGCGTCATAACATCACGATACTCGCGGTCATCTTCTTGCTGGGGGCCCTAGGCACGACGTTCTCGCCGAACGTGTTCGTGATGTACGTCTTCCGCTTCGTGCTGGGATTCGCTGTCGGCGCAGCGTCAGCCACTGTTCCGGTGTACCTTGCTGAAAACGCGCCAAAGCGCATCAGGGGGTCGATCGTGGCTATCGACCAACTCATGATCGTCACCGGTCAGCTGATGGCGTTCTCCATGAACGCCATCATTAACGCCGCTCATGGCGGTCCGCAGTTGATCATCAAGGCCAACAACAATCCGGACAGCCTCGGGATCACCAAGGGCACCTATTCGTGGGACCAGATTCTGGCTCTCCAGGCTTCGAAGGGCGGGCCGCTGGAGGGGGACCGGTACCGCGCGTTCGTGGAGAATCTCGTCATCCAGTCTGGTAACGGTGCGGCCTGGCGGTGGATGCTGGTGCTGTGCTCAATCCCGGCCATCGCGCTGTGGATAGGTATTCGCCTCATGCCTGAGTCGGCTCGTTGGTACTTGGCCAAAGGTCGGGTGGCTGATGCTGTCGGAGCTCTCAAACGAGTGCGCGATCCCCAAAAGGATGGTCCTCTGGACGCTGAGGTCGAGGAGATGCTTGTCACCCAGCAGCGCGAGTTGGAGAACAAGTACCAGGGCAACGCCTTTGCCCACGTGTGGCGAACGCCGTGGCTACGTAAGCTCATGCTAGTAGGTATCTTCCTTGCCATCGTCAACCAGACGACAGGCGTTAATACCGTGATGTATTACGCGCCGAAAGTACTGGAGTATGCCGGTATGACGACCTCTGCCTCGATCACCGCGCAGGTGGCCAATGGTGTCATGTCCGTCATTGGTTCTGTTGGTGGTTTGTGGCTTATCCTCAAGTTCAGCCGACGTAATCTACTCATTTTCGACGTCTCCGCCGTGGGCATTACTTTGCTTGTCATTGCGGGAACCTTCCAGTTCACAATCGCCCCGCACATTGCTGACAAGACCACGCCGCCGACGTGGGCACCGTACCTCATCCTTGGTCTTATGGCGGTGTTTATGCTCATCGTGCAATCTACCAATGGCACGGTGGTGTGGACCATGCTCGGTGAGATGTTCCCGGCAAACGTCCGCGGCATCATGAATGGCACGGCCATCTTCTTCATGTGGGTGATTAACGCTGTCATCACCTTCACCTTCCCGTCCATGATGGCAAGTCTGGGAGGTGGGTTGACGTACACCATCTACGGCATGATGAATCTCGTCATCGCAGTAGTCCTCTTCAAGATCATGCCTGAGACCCGAAATAAGTCCTTGGAGCAGATCGAAACGTACATGGAAGAGCGCTACTCCTGA > 847 HMPREF9206_1478 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 MFS_transporter,_sugar_porter_(SP)_family_protein EFB88394.1 11 MTSRIEVAELVVTTQPAGPKRRMGVVAAVATLGSLLFGYDTGVISGALPFMYLPHGAGGLALTVGHEGAIGGTLTLGAAFGGLIGGMMSDRWGRRHNLLTLAVLFVAGALGTAGAPSVWVMYPFRVVLGFAVGAASATVPVYLSETSPKRMRGRIVALDQFMIVFGQLLAFSVNAAISAAHGGPSLMVTADPTGRLSPGTYSWDTLQAMTTSHGGAMTDEAFHAFLTQLSVSAGSGGAWRWMLVVCTLPAIALWIGMRKMPESARWHLSHGQLRETIACLKQVRVEGVDEPIVDEVTEMVKLNGEGGRLSHRQQWAVVMESRWTRRLLLVGIFLAAVNQTTGVNTVMYYAPKVLEFAGMSTQASIISQVANGVMSVIGAAAGLWLIERFDRRHLLIFDVTAVGVCLLGIAATFGLEIAPHVGQGVLKWAPILVLVLMSIFMLIVQSTNGTVVWTMLGEMFPTRMRGAMNGAAVFCGWLANATITWTFPAMLAGLGGAGTYLTYGLVNLVIALVLVKVMPETKGRSLEEIEVEMRQRYA high_GC_Gram+ Propionibacterium_acnes_J139 Propionibacterium_acnes_J139 ADFS01000001 637606..639222 Durkin,A.S.,_Madupu,R.,_Torralba,M.,_Methe,B.,_Sutton,G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1617 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACCGenome_Coverage:_40xSequencing_Technology:_454. NA 30-DEC-2009 Propionibacterium_acnes_J139_contig00007,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_D1YAZ8_PROAC.gb Propionicibacterium 282582410 Unpublished NA ADFS01000001 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1617 NA genomic_DNA NA J139 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 679194 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Genome_Sequence_of_Propionibacterium_acnes_J139 NA ADFS01000001.1 GTGACATCGAGAATCGAGGTGGCCGAGCTCGTTGTGACAACGCAGCCGGCCGGCCCGAAGCGCCGTATGGGTGTAGTGGCCGCAGTCGCTACCCTGGGTTCACTTCTTTTCGGCTACGACACCGGAGTCATTTCCGGCGCCTTGCCGTTCATGTATCTGCCTCATGGCGCTGGCGGCCTGGCCCTGACGGTGGGACATGAAGGTGCCATCGGTGGCACCTTAACCCTTGGCGCTGCTTTCGGCGGCCTTATAGGCGGGATGATGAGCGACCGCTGGGGTCGGCGTCATAACCTCCTGACTTTGGCTGTCCTCTTTGTTGCGGGAGCTTTGGGAACTGCCGGTGCCCCCAGCGTGTGGGTGATGTACCCCTTCCGAGTGGTGCTCGGATTCGCCGTGGGAGCGGCCTCGGCGACAGTGCCGGTCTACTTGTCGGAGACCTCACCCAAGCGGATGCGTGGGCGGATCGTGGCGCTTGACCAATTCATGATCGTCTTTGGTCAGCTGCTGGCTTTCTCCGTCAATGCCGCCATCTCAGCGGCTCATGGGGGACCCAGCTTGATGGTAACTGCGGATCCGACGGGACGACTGTCTCCGGGAACTTATTCCTGGGACACTTTGCAGGCCATGACGACCTCCCACGGGGGAGCGATGACCGACGAGGCTTTTCATGCCTTCCTTACTCAGCTGTCGGTATCCGCCGGGTCCGGTGGAGCATGGCGCTGGATGCTCGTGGTATGCACTCTGCCCGCCATCGCGCTGTGGATCGGTATGAGGAAGATGCCCGAGTCGGCTCGTTGGCATCTAAGCCACGGTCAGCTCCGGGAGACCATCGCATGCCTCAAACAGGTGCGCGTCGAAGGGGTTGATGAACCCATCGTCGACGAGGTCACTGAGATGGTTAAACTCAACGGCGAGGGCGGCAGGCTCAGTCACCGTCAGCAGTGGGCGGTCGTCATGGAGTCACGCTGGACGCGTCGCCTCCTGCTGGTCGGGATTTTCCTTGCTGCAGTTAACCAAACCACCGGCGTCAATACCGTCATGTATTACGCGCCCAAGGTGTTGGAGTTCGCAGGAATGAGCACCCAGGCCTCGATTATTTCTCAGGTGGCTAATGGCGTCATGTCTGTTATTGGTGCCGCTGCAGGCTTGTGGCTCATCGAACGGTTTGATCGTCGTCACCTGCTTATCTTCGATGTCACGGCGGTCGGTGTGTGTCTCCTTGGTATTGCGGCTACTTTCGGGCTGGAAATTGCTCCTCATGTGGGTCAAGGGGTACTGAAGTGGGCGCCTATTCTCGTGCTCGTCCTGATGAGTATCTTCATGCTTATCGTGCAGTCCACTAACGGCACAGTGGTGTGGACCATGCTTGGTGAGATGTTCCCGACCCGGATGCGCGGGGCGATGAACGGTGCTGCGGTGTTTTGTGGGTGGCTGGCTAATGCGACGATCACCTGGACCTTCCCGGCCATGCTGGCGGGGCTCGGCGGTGCGGGAACTTACCTGACTTATGGCCTGGTAAACCTCGTGATCGCGTTGGTCCTCGTTAAGGTCATGCCGGAGACCAAGGGACGCTCACTGGAGGAGATCGAGGTCGAAATGAGGCAGCGCTACGCCTAA > 848 HMPREF9206_0685 an_automated_process_has_identified_a_potential_problem_with_this_gene_model;_the_current_end5_and/or_the_end3_may_need_to_extended_or_the_current_gene_model_may_need_to_be_merged_with_a_neighboring_gene_model;_the_current_gene_model_(or_a_revised_gene_model)_may_contain_a_premature_stop;_identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family_protein EFB87414.1 11 MYTYTTFAAYFEDQFFSPDDPHKSIYIYAIFWATFIMRPFGSWFFGRWADRHGRRSALTMAVTIMAVGSLVISVLPTRGTIGVGAPILLLICRIVQGFATGGEYGTSATYMSEASTKGHRGFFSSFQYFTLVGGLVTAQAVLLLLSSLMSEATIHAWGWRIPFFIGGVAALIVFFMQKTMDESLSTEHLKSVRSSEDSSSGSLKELFGNHLGNFLLAFTIASGGTLCFYVYTVNAPNIVHSTFSSTPMAATAVNLIALFILMLGQPLGGLIGDRIGRKPVLLFFAAGGVVYTWGLVTCLSHARKPVTAFLMLLMGYIFLTGYTSISAVVKSDLFPTDVRALGVGMAHGFANSLFGGTAPLIYVWAKQGDAIPAFIGYVTALSAVTFLTILFGLTTRTASHLDAPTKGGHD high_GC_Gram+ Propionibacterium_acnes_J139 Propionibacterium_acnes_J139 ADFS01000004 118559..119791 Durkin,A.S.,_Madupu,R.,_Torralba,M.,_Methe,B.,_Sutton,G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1233 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACCGenome_Coverage:_40xSequencing_Technology:_454. NA 30-DEC-2009 Propionibacterium_acnes_J139_contig00004,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_D1YE83_PROAC.gb Propionicibacterium 282581909 Unpublished NA ADFS01000004 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1233 NA genomic_DNA NA J139 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 679194 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Genome_Sequence_of_Propionibacterium_acnes_J139 NA ADFS01000004.1 GTGTACACGTACACGACGTTCGCAGCCTATTTCGAGGACCAGTTCTTCTCGCCTGACGACCCGCACAAGAGCATCTACATCTACGCGATTTTCTGGGCGACCTTCATCATGAGGCCGTTCGGATCGTGGTTCTTCGGTCGCTGGGCCGACCGTCACGGACGCCGGTCCGCCCTCACCATGGCAGTGACAATCATGGCCGTCGGCTCCCTCGTCATCTCCGTGTTGCCCACCCGAGGCACCATCGGAGTGGGGGCCCCGATCCTGTTGCTCATCTGTCGTATCGTGCAAGGATTCGCCACAGGAGGTGAGTACGGCACCTCGGCCACCTACATGTCAGAAGCCTCCACCAAGGGACACCGCGGTTTCTTCTCCTCGTTCCAGTACTTCACCCTCGTGGGTGGTTTAGTGACAGCCCAGGCCGTCCTACTCCTGCTGTCCTCCCTCATGAGTGAGGCCACGATCCATGCCTGGGGATGGCGCATCCCATTCTTCATCGGTGGCGTCGCAGCGCTCATCGTTTTCTTCATGCAGAAGACGATGGATGAATCGCTGAGTACCGAACATCTTAAATCCGTGCGGTCGAGTGAGGACAGCTCGTCAGGAAGTCTGAAAGAGCTCTTTGGAAACCATCTCGGTAACTTCCTCCTGGCTTTTACCATCGCCAGCGGCGGTACCCTGTGCTTCTATGTCTACACCGTCAATGCACCGAATATCGTCCATTCGACTTTCAGCAGCACTCCGATGGCGGCAACCGCGGTCAACCTCATCGCCCTATTCATCCTCATGCTCGGGCAACCGCTGGGAGGCCTCATCGGTGACCGGATCGGACGCAAACCGGTGTTGCTCTTCTTTGCCGCCGGTGGAGTCGTTTATACCTGGGGTCTCGTGACCTGTCTGTCGCATGCCCGCAAGCCCGTAACTGCATTCCTCATGCTGCTCATGGGCTATATCTTCCTTACCGGATATACCTCGATCTCCGCAGTTGTGAAGTCCGACCTTTTCCCAACCGATGTCAGGGCGCTGGGTGTTGGGATGGCCCATGGTTTCGCGAATTCCCTGTTCGGCGGCACGGCTCCACTCATTTACGTGTGGGCGAAACAGGGTGACGCGATCCCCGCCTTCATCGGGTATGTGACGGCGCTGTCCGCGGTCACCTTCCTTACGATCCTCTTCGGGCTGACCACACGGACTGCGTCACACCTGGATGCGCCGACGAAGGGTGGGCACGACTAA > 849 HMPREF9207_1522 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family_protein EFD07064.1 11 MSNVEAIAARKSWRDELTGTQWKSFWAAWIGYLLDGFDFVMITLVLTEIGRTFHVGPAATATLVSAAFIARWFGGLLLGAIGDRIGRKEAMVISILLYAGGSVVCAIAPAFWVIFVARVCIGMGMAGEYGSSATYVIESWPVRLRNKASGFLISGFSLGAGVTAQVYALIEYLTRGTSAEPHTWRILFALGIIPIALALWLRRALPEAADFVKMREEEAARAAVGETVKKTDMFTMLFARNPKRSIINIVLALTTFGCLIVIYLFKSGVPGLVLALLWVVVAAVMVSFMVQFEGPRWPTGVAVMITVFVAFLYSWPLQALLPTYYRQTLGLASDTASNLVTATSFGAAAGCIMAGFIGDRFGTRKAYWVSLLISEFLVLPVFLVSRGMVHSSVIWVVLLGVFIFVQQMFGQGISGLLPKFISNYFPVEKRAAGLGFSYNVGALGGAIAPVLGIALAGDPATGVGGVLPSSWGLGWTLFILSFVFTAVIIVLIAINFPLRMQKLLRPDHVRPADRMDHVDEELAVSRNPDTIVAS high_GC_Gram+ Propionibacterium_acnes_J165 Propionibacterium_acnes_J165 ADJL01000038 15943..17547 Durkin,A.S.,_Madupu,R.,_Torralba,M.,_Methe,B.,_Sutton,G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1605 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACCGenome_Coverage:_13xSequencing_Technology:_454Annotation_was_updated_on_the_contigs_in_August_2010. NA 11-AUG-2010 Propionibacterium_acnes_J165_contig00170,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_D3MEB6_PROAC.gb Propionicibacterium 289158727 Unpublished NA ADJL01000038 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1605 NA genomic_DNA NA J165 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 679195 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Genome_Sequence_of_Propionibacterium_acnes_J165 NA ADJL01000038.1 TCACGAGGCGACGATAGTGTCAGGGTTCCGGGAAACAGCAAGCTCTTCATCGACGTGATCCATCCGGTCAGCGGGACGCACGTGGTCGGGGCGCAACAGCTTCTGCATCCGGAGCGGGAAATTGATGGCGATAAGAACGATGATCACCGCGGTGAATACGAAGGACAAGATGAACAGGGTCCATCCGAGGCCCCAGCTGGAGGGCAGCACACCGCCAACACCGGTAGCTGGATCACCTGCCAGGGCAATGCCGAGGACCGGGGCGATAGCCCCACCAAGAGCTCCGACGTTATAAGAGAAACCCAAACCAGCAGCGCGCTTCTCGACCGGAAAGTAGTTCGAAATGAACTTCGGTAGCAGACCAGAGATACCTTGTCCGAACATCTGCTGGACAAAGATGAAAACTCCAAGAAGCACGACCCATATCACCGAGGAATGCACCATGCCTCGGCTGACGAGGAAGACCGGCAGGACGAGGAACTCCGAGATGAGCAGGGAGACCCAATAGGCCTTGCGGGTTCCGAATCTGTCACCGATAAATCCGGCCATGATGCAGCCCGCTGCCGCGCCAAAAGAAGTGGCGGTCACGAGATTGGAAGCGGTGTCGCTCGCCAGGCCCAGGGTTTGGCGATAGTAGGTAGGCAACAGAGCCTGCAAAGGCCAGGAGTAGAGGAAGGCGACAAACACCGTGATCATAACGGCCACACCTGTCGGCCAACGCGGTCCCTCGAACTGGACCATGAAGCTCACCATGACGGCCGCGACAACGACCCACAGCAATGCCAACACGAGCCCCGGGACGCCGCTCTTGAACAGGTAAATGACGATTAGGCATCCGAAAGTTGTGAGGGCCAGAACAATGTTAATGATGCTTCGCTTCGGGTTACGTGCGAAGAGCATGGTGAACATGTCAGTCTTCTTGACAGTCTCGCCGACAGCGGCGCGAGCGGCCTCCTCCTCGCGCATTTTTACAAAGTCGGCGGCCTCAGGAAGGGCACGACGCAGCCACAGGGCCAAGGCGATCGGAATAATGCCAAGCGCGAAGAGTATTCGCCAGGTATGAGGCTCAGCGGAGGTACCACGGGTAAGGTACTCGATGAGGGCATACACCTGAGCCGTCACACCGGCGCCAAGGGAAAATCCGGAAATAAGGAACCCGGAGGCCTTATTCCGCAGACGCACTGGCCAGGACTCAATGACGTAGGTGGCTGAAGAGCCGTACTCACCGGCCATACCCATGCCGATGCAGACACGGGCGACGAAGATAACCCAGAAAGCCGGGGCAATGGCACAGACGACCGATCCACCCGCATAAAGCAGAATTGAGATGACCATAGCCTCCTTGCGGCCGATCCGGTCACCGATAGCTCCCAGCAGCAGTCCGCCGAACCATCGCGCAATAAAAGCAGCGGACACCAAGGTCGCAGTCGCCGCTGGTCCGACGTGAAAGGTCCTGCCGATCTCGGTGAGGACCAGCGTGATCATGACGAAGTCGAATCCGTCCAGCAGATAACCGATCCATGCTGCCCAGAAGGATTTCCACTGCGTGCCAGTCAACTCGTCACGCCATGATTTCCTGGCTGCTATGGCCTCGACGTTGCTCAT > 850 HMPREF9207_1632 an_automated_process_has_identified_a_potential_problem_with_this_gene_model;_the_current_end5_and/or_the_end3_may_need_to_extended_or_the_current_gene_model_may_need_to_be_merged_with_a_neighboring_gene_model;_the_current_gene_model_(or_a_revised_gene_model)_may_contain_a_premature_stop;_identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family_protein EFD06971.1 11 MYTYTTFAAYFEDQFFSPDDPHKSIYIYAIFWATFIMRPFGSWFFGRWADRHGRRSALIMAVTIMAVGSLVISVLPTRGTIGVGAPILLLICRIVQGFATGGEYGTSATYMSEASTKGHRGFFSSFQYFTLVGGLVTAQAVLLLLSSLMSEATIHAWGWRIPFFIGGVAALIVFFMQKTMDKSLSTEHLKSVRSGEDSSSGSLKELFGNHLGNFLLAFTIASGGTLCFYVYTVNAPNIVHSTFSSTPMAATAVNLIALFILMLGQPLGGLIGDRIGRKPVLLFFAAGGVVYTWVLVTCLSHARKPVTAFLMLLMGYIFLTGYTSISTVVKSDLFPTDVRALGVGMAHGFANSLFGGTAPLIYVWAKQGDAIPAFIGYVTALSAVTLLTILFGLTTRTASHLDAPTKGGHD high_GC_Gram+ Propionibacterium_acnes_J165 Propionibacterium_acnes_J165 ADJL01000038 117609..118841 Durkin,A.S.,_Madupu,R.,_Torralba,M.,_Methe,B.,_Sutton,G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1233 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACCGenome_Coverage:_13xSequencing_Technology:_454Annotation_was_updated_on_the_contigs_in_August_2010. NA 11-AUG-2010 Propionibacterium_acnes_J165_contig00170,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_D3MEM4_PROAC.gb Propionicibacterium 289158727 Unpublished NA ADJL01000038 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1233 NA genomic_DNA NA J165 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 679195 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Genome_Sequence_of_Propionibacterium_acnes_J165 NA ADJL01000038.1 GTGTACACGTACACGACGTTCGCAGCCTATTTCGAGGACCAGTTCTTCTCGCCTGACGACCCGCACAAGAGCATCTACATCTACGCGATTTTCTGGGCGACCTTCATCATGAGGCCGTTCGGATCGTGGTTCTTCGGTCGCTGGGCCGACCGTCACGGACGTCGGTCCGCCCTCATCATGGCAGTGACAATCATGGCCGTCGGCTCCCTCGTCATCTCCGTGTTGCCCACCCGAGGCACCATCGGAGTGGGGGCCCCGATCCTGTTGCTCATCTGTCGTATCGTGCAAGGATTCGCCACAGGAGGTGAGTACGGCACCTCGGCCACCTACATGTCAGAAGCCTCCACCAAGGGACACCGCGGTTTCTTCTCCTCGTTCCAGTACTTCACCCTCGTGGGTGGTTTAGTGACAGCCCAGGCCGTCCTACTCCTGCTGTCCTCCCTCATGAGTGAGGCCACGATCCATGCCTGGGGATGGCGCATCCCATTCTTCATCGGTGGCGTCGCAGCGCTCATCGTTTTCTTCATGCAGAAGACGATGGATAAATCGCTGAGTACCGAACATCTTAAATCCGTGCGGTCGGGTGAGGACAGCTCGTCAGGAAGTCTGAAAGAGCTCTTTGGAAACCATCTCGGTAACTTCCTCCTGGCTTTTACCATCGCCAGCGGCGGTACCCTGTGCTTCTACGTCTACACCGTCAATGCACCGAATATCGTCCATTCGACTTTCAGCAGCACTCCGATGGCGGCAACCGCGGTCAACCTCATCGCCCTATTCATCCTCATGCTCGGGCAACCGCTGGGAGGCCTCATCGGTGACCGGATCGGACGCAAACCGGTGTTGCTCTTCTTTGCCGCCGGTGGAGTCGTTTATACCTGGGTTCTCGTGACCTGTCTGTCGCATGCCCGCAAGCCCGTAACTGCATTCCTCATGCTGCTCATGGGCTATATCTTCCTTACCGGATATACCTCGATCTCCACAGTTGTGAAGTCCGACCTTTTCCCAACCGATGTCAGGGCGCTGGGTGTTGGGATGGCCCATGGTTTCGCGAATTCCCTGTTCGGCGGCACGGCTCCACTCATTTACGTGTGGGCGAAACAGGGTGACGCGATCCCCGCCTTCATCGGGTATGTGACGGCGCTGTCCGCGGTCACCTTACTTACGATCCTCTTCGGGCTGACCACACGGACTGCGTCACACCTGGATGCGCCGACGAAGGGTGGGCACGACTAA > 851 HMPREF1034_0033 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family_protein EFD02699.1 11 MSTSTTPKQSALDLIDSRPLTRNQKNLVALAVVGNISEFFDIFLIGFVVSVLTKPWNLTGTEAGVILACSGLGTVIGAIMWGRLADKIGRRSSFFWCVLLFVVFTVVSVFTPDRGWIMLAILRIGVGIGVGGLNITSIPYVQEFVPAKQRGLLAGLASVFIPLGLFLGSLAQNALGDNWRALIALGAIPVFLLVWIRFVPESPRFLQSHGRDKEAREALAWALDMPADDIGDLPAVEHVQDASYSLVFGKYRKSLLIVSLGSFCFILGSFTIQSWGQTLLKTGFGKSPEQVGTLFMFVSLADLIGRFLSAWLADRIGRRATMLSFGLIGAGGTLIIALSARLGWGWQIFFVGVLIAMAFADGAFGILNAFGAEQFPNEARSTGLGLGYGIGATAKIIGPALMGLMVGGSAVKQNVTLDAVFPAFILFAVLLVIGGMTYMFARETRGTSLDTI high_GC_Gram+ Propionibacterium_acnes_SK187 Propionibacterium_acnes_SK187 ADJM01000007 13189..14547 Durkin,A.S.,_Madupu,R.,_Torralba,M.,_Methe,B.,_Sutton,G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1359 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACCGenome_Coverage:_99xSequencing_Technology:_454Annotation_updated_on_the_contigs_in_August_2010. NA 11-AUG-2010 Propionibacterium_acnes_SK187_contig00002,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_D3MK56_PROAC.gb Propionicibacterium 289154006 Unpublished NA ADJM01000007 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1359 NA genomic_DNA NA SK187 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 686659 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Genome_Sequence_of_Propionibacterium_acnes_SK187 NA ADJM01000007.1 ATGTCCACCTCAACAACACCCAAACAATCAGCTCTAGACCTCATCGATTCGCGTCCCTTAACGCGCAATCAGAAGAATCTTGTTGCCCTAGCCGTCGTCGGAAATATCTCCGAGTTCTTTGATATCTTCCTCATTGGTTTCGTCGTATCCGTCCTGACTAAGCCATGGAATCTGACTGGCACTGAGGCGGGCGTCATTCTCGCCTGTTCCGGTCTGGGGACGGTCATTGGTGCCATCATGTGGGGACGTCTTGCCGACAAGATCGGACGCCGCTCCTCTTTCTTCTGGTGCGTGCTCCTGTTCGTCGTGTTCACTGTAGTATCAGTGTTCACCCCAGATCGTGGCTGGATTATGCTCGCCATTTTGCGTATTGGCGTGGGGATCGGAGTCGGCGGACTTAATATCACCTCGATTCCCTACGTCCAGGAGTTCGTGCCTGCTAAGCAGCGCGGTCTTCTTGCCGGCCTGGCGTCGGTATTCATCCCCCTCGGTCTGTTCTTGGGGTCGTTAGCACAAAATGCACTGGGCGATAATTGGCGTGCCCTCATCGCTTTGGGCGCCATTCCTGTTTTCCTGCTGGTGTGGATCCGTTTCGTGCCCGAATCACCACGGTTCCTACAGAGTCATGGGCGTGATAAGGAAGCACGCGAGGCCCTAGCCTGGGCACTCGATATGCCCGCTGACGACATTGGAGATTTGCCTGCCGTTGAACACGTCCAAGACGCTTCCTACTCACTTGTCTTTGGTAAATACCGCAAGAGTCTTCTCATCGTCAGTCTGGGATCATTCTGCTTCATTCTGGGCTCTTTTACGATTCAGTCGTGGGGCCAGACCCTGCTCAAGACCGGCTTTGGCAAGTCTCCCGAGCAAGTCGGGACCCTGTTCATGTTCGTTTCCCTGGCCGATCTCATCGGGCGCTTCCTATCAGCATGGCTGGCAGACCGCATTGGTCGGAGAGCCACCATGTTGTCGTTTGGCCTCATCGGTGCTGGCGGGACTCTCATCATCGCCCTTTCGGCCCGCCTGGGTTGGGGCTGGCAGATCTTCTTCGTCGGTGTCCTCATTGCGATGGCCTTCGCCGACGGCGCCTTCGGCATCCTCAATGCTTTCGGCGCCGAGCAATTCCCCAACGAAGCTCGCTCGACTGGTCTGGGACTGGGCTACGGCATCGGCGCCACCGCCAAGATCATCGGTCCGGCGCTTATGGGACTCATGGTGGGCGGATCTGCCGTCAAGCAGAATGTCACCCTGGACGCGGTATTTCCGGCATTCATCCTGTTCGCTGTGCTGCTAGTCATTGGCGGTATGACGTACATGTTTGCCCGCGAAACTCGTGGCACCTCGCTCGACACGATCTGA > 852 HMPREF1034_0717 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family_protein EFD02280.1 11 MYTYTTFAAYFEDQFFSPDDPHKSIYIYAIFWATFIMRPFGSWFFGRWADRHGRRSALIMAVTIMAVGSLVISVLPTRGTIGVGAPILLLICRIVQGFATGGEYGTSATYMSEASTKGHRGFFSSFQYFTLVGGLVTAQAVLLLLSSLMSEATIHAWGWRIPFFIGGVAALIVFFMQKTMDESLSTEHLKSVRSGEDSSSGSLKELFGNHLGNFLLAFTIASGGTLCFYVYTVNAPNIVHSTFSSTPMAATAVNLIALFILMLGQPLGGLIGDRIGRKPVLLFFAAGGVVYTWVLVTCLSHARKPVTAFLMLLMGYIFLTGYTSISAVVKSDLFPTDVRALGVGMAHGFANSLFGGTAPLIYVWAKQGDAIPAFIGYVTALSAVTLLTILFGLTTRTASHLDAPTKGGHD high_GC_Gram+ Propionibacterium_acnes_SK187 Propionibacterium_acnes_SK187 ADJM01000033 55709..56941 Durkin,A.S.,_Madupu,R.,_Torralba,M.,_Methe,B.,_Sutton,G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1233 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACCGenome_Coverage:_99xSequencing_Technology:_454Annotation_updated_on_the_contigs_in_August_2010. NA 11-AUG-2010 Propionibacterium_acnes_SK187_contig00004,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_D3MMU1_PROAC.gb Propionicibacterium 289153486 Unpublished NA ADJM01000033 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1233 NA genomic_DNA NA SK187 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 686659 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Genome_Sequence_of_Propionibacterium_acnes_SK187 NA ADJM01000033.1 GTGTACACGTACACGACGTTCGCAGCCTATTTCGAGGACCAGTTCTTCTCGCCTGACGACCCGCACAAGAGCATCTACATCTACGCGATTTTCTGGGCGACCTTCATCATGAGGCCGTTCGGATCGTGGTTCTTCGGTCGCTGGGCCGACCGTCACGGACGTCGGTCCGCCCTCATCATGGCAGTGACAATCATGGCCGTCGGCTCCCTCGTCATCTCCGTGTTGCCCACCCGAGGCACCATCGGAGTGGGGGCCCCGATCCTGTTGCTCATCTGTCGTATCGTGCAAGGATTCGCCACAGGAGGTGAGTACGGCACCTCGGCCACCTACATGTCAGAAGCCTCCACCAAGGGACACCGCGGTTTCTTCTCCTCGTTCCAGTACTTCACCCTCGTGGGTGGTTTAGTGACAGCCCAGGCCGTCCTACTCCTGCTGTCCTCCCTCATGAGTGAGGCCACGATCCATGCCTGGGGATGGCGCATCCCATTCTTCATCGGTGGCGTCGCAGCGCTCATCGTTTTCTTCATGCAGAAGACGATGGATGAATCGCTGAGTACCGAACATCTTAAATCCGTGCGGTCGGGTGAGGACAGCTCGTCAGGAAGTCTGAAAGAGCTCTTTGGAAACCATCTCGGTAACTTCCTCCTGGCTTTTACCATCGCCAGCGGCGGTACCCTGTGCTTCTACGTCTACACCGTCAATGCACCGAATATCGTCCATTCGACTTTCAGCAGCACTCCGATGGCGGCAACCGCGGTCAACCTCATCGCCCTATTCATCCTCATGCTCGGGCAACCGCTGGGAGGCCTCATCGGTGACCGGATCGGACGCAAACCGGTGTTGCTCTTCTTTGCCGCCGGTGGAGTCGTTTATACCTGGGTTCTCGTGACCTGTCTGTCGCATGCCCGCAAGCCCGTAACTGCATTCCTCATGCTGCTCATGGGCTATATCTTCCTTACCGGATATACCTCGATCTCCGCAGTTGTGAAGTCCGACCTTTTCCCAACCGATGTCAGGGCGCTGGGTGTTGGGATGGCCCATGGTTTCGCGAATTCCCTGTTCGGCGGCACGGCTCCACTCATTTACGTGTGGGCGAAACAGGGTGACGCGATCCCCGCCTTCATCGGGTATGTGACGGCGCTGTCCGCGGTCACCTTACTTACGATCCTCTTCGGGCTGACCACACGGACTGCGTCACACCTGGATGCGCCGACGAAGGGTGGGCACGACTAA > 853 HMPREF9622_01275 KEGG:_cai:Caci_8679_2.2e-15_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFT15658.1 11 MASSDDIITIKEMGDKRPWWQYLDATKWKLFIAALIGVTLDGYDFVLITLALPEIKATFDLTLVQSAALVSAAFITRWLGGLILGGVGDRFGRKPAMIIATVLFAIGSLLMGFSPNFMFLFVMRMVVGFAMAGEYGSSATYVIESWHPRIRGKASSFLLSGYAIGAILAVQVDKYLVPWANSWHTGWGWRALFITGVVPIAVALYMRRRLPEASDWETAKSRNRRESSESRDAFQVLFSGRRMSLNITLVIATMAGLLAIFALNILTFWGVFAVAATCGAIFVCLIVQFDPRRWVIGIGIMIVILSAFMYGWPILGLLPTYLKGAGYAASTVANMLTVAQFGNMIGYFVAGFMGDLIGMRKWYFTSILIAQVIVFPLFFAGIKSAWLIGLLLFFNQLFGQGISGLAPRWVSSYFPVEQRAAGVGFIYNVGALGGAIGPVMRASLAKGYGLGSALGVLSVGFGLIVVLGVGLNLPRKLQALINPKVVRPEDGDDRYINSEDLSSEFASGGC high_GC_Gram+ Propionibacterium_acnes_HL037PA3 Propionibacterium_acnes_HL037PA3 ADXV01000028 9307..10839 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1533 Propionibacterium_acnes_HL037PA3_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL037PA3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_64.1xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL037PA3_P_acnesHL037PA3-1.0_Cont23.6,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4AEG0_PROAC.gb Propionicibacterium 302315639 Submitted_(06-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADXV01000028 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1533 NA genomic_DNA NA HL037PA3 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765124 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADXV01000028.1 ATGGCCAGCTCGGATGACATCATCACCATCAAAGAAATGGGTGACAAGAGGCCATGGTGGCAGTACTTGGACGCCACCAAGTGGAAGCTGTTCATTGCCGCCCTCATCGGCGTCACCCTTGACGGCTACGACTTCGTGCTCATCACCCTGGCGCTTCCAGAGATCAAGGCAACCTTCGATCTTACCTTAGTGCAAAGCGCCGCGCTGGTGTCAGCTGCCTTCATCACCCGGTGGTTGGGCGGACTGATCCTGGGTGGTGTTGGCGACAGGTTCGGACGCAAGCCGGCCATGATCATCGCGACCGTGCTGTTCGCAATCGGCTCGCTCCTCATGGGATTCTCGCCGAACTTCATGTTCCTGTTCGTCATGCGTATGGTCGTCGGTTTCGCCATGGCCGGAGAATATGGGTCATCGGCAACATATGTCATCGAATCGTGGCACCCCCGAATCCGCGGCAAGGCATCATCGTTTCTGTTATCCGGCTATGCGATAGGTGCCATTTTGGCCGTTCAGGTAGACAAATACTTAGTCCCATGGGCCAACAGTTGGCATACCGGATGGGGCTGGCGGGCCCTGTTCATCACCGGGGTCGTACCCATCGCAGTGGCACTGTACATGCGACGTCGCCTCCCCGAAGCTAGCGACTGGGAAACGGCGAAGTCACGCAACCGGAGAGAATCGTCTGAATCGCGTGACGCGTTCCAGGTGCTGTTCAGCGGAAGGCGCATGTCCCTGAATATCACGCTCGTCATCGCGACGATGGCAGGCCTACTGGCCATCTTCGCTCTCAACATTCTCACCTTCTGGGGTGTCTTCGCCGTGGCCGCAACCTGTGGTGCCATCTTCGTGTGTCTCATCGTGCAATTCGATCCTCGACGCTGGGTCATCGGCATCGGAATCATGATCGTCATTCTCTCTGCCTTCATGTACGGATGGCCCATCCTTGGACTCTTACCGACGTACCTCAAGGGTGCCGGGTATGCAGCGTCCACCGTCGCAAATATGTTGACGGTCGCACAATTCGGCAACATGATCGGTTACTTCGTCGCAGGCTTCATGGGAGACTTGATAGGAATGCGCAAGTGGTACTTCACGAGCATTCTCATCGCACAAGTCATCGTGTTCCCCCTGTTCTTTGCGGGAATCAAGTCAGCGTGGCTCATCGGGCTTCTGCTGTTTTTCAACCAGTTGTTCGGCCAAGGCATTTCAGGACTGGCCCCTCGCTGGGTGTCGAGCTACTTCCCTGTCGAGCAGCGAGCTGCGGGAGTGGGGTTCATCTACAACGTCGGAGCTCTCGGCGGCGCAATCGGACCGGTCATGCGCGCCTCACTGGCCAAGGGCTACGGCCTGGGATCGGCGCTGGGGGTGTTGTCCGTAGGCTTCGGCCTGATAGTCGTCCTTGGCGTCGGGCTTAATCTTCCACGCAAGCTCCAAGCCCTCATCAATCCGAAGGTCGTCCGTCCCGAGGACGGGGACGACCGGTATATCAACAGCGAGGACCTTTCGAGCGAGTTCGCGTCCGGCGGGTGCTGA > 854 HMPREF9609_02286 KEGG:_bid:Bind_0105_3.6e-13_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS99044.1 11 MASSDDIITIKEMGDKRRWWQYLDATKWKLFIAALIGVTLDGYDFVLITLALPEIKAAFGLTLVQSAALVSAAFITRWLGGLILGGVGDRFGRKPAMIIATVLFAIGSLLMGFSPNFMFLFIMRMVVGFAMAGEYGSSATYVIESWHPRIRGKASSFLLSGYAIGAILAVQVDKYLVPWVDSWHAGWGWRALFITGIVPIAVALYMRRRLPEASDWETAKSREREKSSESRDAFQVLFSGRRMSLNITLVIAAMAGLLAIFALNILPFWGVLAVAIACGAIFVCLIVQFDPRRWVIGIGIMIVILSAFMYGWPILGLLPTYLTGAGYAASTVANLLTIAQFGNMIGYFVTGFMGDWIGMLKWYFTSILIAQIIVFPLFFAGIKSAWLIGLLLFFNQLFGQGVSGLAPRWVSSYFPVEQRAAGVGFIYNVGALGGAIGPFVGASLAKSHGLGSALGVLSVGFGLIVVLGVGLNLPRKLQALVNPEAVRPEDGDDRYINSGDLSSEFASSEC high_GC_Gram+ Propionibacterium_acnes_HL027PA1 Propionibacterium_acnes_HL027PA1 ADXX01000089 668..2200 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1533 Propionibacterium_acnes_HL027PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL027PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL027PA1_P_acnesHL027PA1-1.0_Cont141.3,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4AXK0_PROAC.gb Propionicibacterium 302315839 Submitted_(06-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADXX01000089 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1533 NA genomic_DNA NA HL027PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765111 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADXX01000089.1 ATGGCCAGCTCAGACGACATCATCACCATCAAGGAGATGGGTGACAAGAGACGATGGTGGCAGTACTTAGACGCCACCAAATGGAAGCTCTTCATTGCAGCCCTTATTGGTGTCACCCTTGACGGCTACGACTTCGTGCTCATCACCTTGGCACTGCCAGAGATCAAGGCGGCCTTTGGCCTCACCCTGGTACAAAGCGCAGCGTTGGTGTCAGCAGCCTTCATCACACGGTGGCTGGGCGGACTAATCCTGGGCGGTGTTGGCGACAGGTTCGGACGCAAGCCAGCCATGATCATCGCAACCGTATTGTTCGCGATCGGCTCGCTCCTCATGGGATTTTCGCCGAACTTCATGTTCCTGTTCATTATGCGCATGGTCGTCGGCTTCGCGATGGCGGGAGAGTACGGGTCATCGGCAACATATGTCATCGAATCGTGGCACCCCCGAATCCGCGGCAAGGCATCGTCATTTCTATTGTCAGGCTATGCGATAGGCGCCATCCTGGCCGTCCAGGTCGACAAGTACTTAGTCCCATGGGTCGACAGTTGGCATGCCGGATGGGGTTGGAGAGCCCTGTTCATCACCGGAATCGTGCCCATCGCAGTGGCACTGTACATGCGACGTCGCCTCCCCGAAGCTAGCGACTGGGAAACGGCAAAGTCACGCGAGCGGGAAAAATCGTCCGAATCACGTGACGCTTTCCAGGTGCTGTTCAGCGGAAGGCGCATGTCACTAAACATCACACTCGTCATCGCGGCAATGGCAGGTCTACTAGCCATCTTCGCCCTCAACATCCTGCCTTTCTGGGGCGTCCTCGCCGTGGCCATAGCCTGTGGCGCCATCTTCGTGTGTCTCATCGTGCAATTTGATCCTCGACGCTGGGTCATCGGCATCGGAATCATGATCGTTATCCTTTCTGCCTTCATGTATGGATGGCCCATCCTTGGACTCTTGCCTACATACCTCACGGGTGCAGGATATGCAGCTTCCACCGTCGCCAATCTGCTAACGATCGCACAATTCGGCAACATGATTGGTTACTTTGTCACAGGCTTCATGGGAGACTGGATAGGAATGCTAAAGTGGTACTTCACGAGCATTCTCATAGCGCAGATCATCGTGTTTCCGCTATTCTTTGCGGGAATTAAGTCGGCATGGCTCATTGGGCTTCTACTGTTCTTCAACCAGTTGTTCGGCCAAGGTGTTTCAGGGCTAGCCCCTCGGTGGGTGTCGAGCTATTTCCCCGTCGAGCAGCGAGCTGCCGGAGTGGGGTTCATCTACAATGTCGGAGCTCTCGGCGGTGCAATTGGACCATTTGTGGGCGCCTCGCTGGCTAAGAGCCACGGTCTGGGATCGGCTCTAGGGGTGTTGTCCGTGGGCTTCGGCCTGATTGTTGTCCTTGGCGTTGGGCTGAATCTGCCACGCAAGCTACAGGCTCTCGTCAACCCAGAGGCCGTCCGACCCGAGGACGGAGATGACCGGTACATCAACAGCGGCGACCTTTCGAGCGAGTTTGCATCCAGCGAGTGCTAA > 855 HMPREF9606_01873 KEGG:_hmu:Hmuk_3220_1.7e-62_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_sugar_porter_family_protein EFS88997.1 11 MASNGHARVEMKPGDSGSAGATRNSQTSWAVFIAVTAAALGITYGYDISNTAAALQFVQRDFGIYSAINTASVVGQIAGAILGGPMANAIGRKKSMLVIAAGYTIFAILTAISPSAGLFLAMRVLLGITIGLSITVVPVFIAESAPASRRGGLATAYQVTCVVGIILGYLVGYSLLPTDTWRWILGVAAVPAFIVLLMLVRTQETPSWYMLKGREDEARRAMERIEVAELVEPSLDEIRNSLSSRPSGSVWGRLREMFHGGMARATIFAIVLGFSIQITGINATIYYAPGIYSRMGFTDTATTYLVPSLVQFLSLISVVISMLVIDKVGRRFVLITGISTMIVATIVLIVTYLASGFEGAVAGIIGLVGMSLFTMGFTFGFGSIVWVYAGEIFPARYRSLGASLVLTADLIANAITAQLGAAMLDGIGLAGTFGVYGGLLVVALLFLLRYAPETSGRSLEEIQDYWNNGARWPKADSPSMG high_GC_Gram+ Propionibacterium_acnes_HL036PA3 Propionibacterium_acnes_HL036PA3 ADXY01000052 34810..36255 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1446 Propionibacterium_acnes_HL036PA3_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL036PA3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_68xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL036PA3_P_acnesHL036PA3-1.0_Cont22.11,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4B3Y7_PROAC.gb Propionicibacterium 302315949 Submitted_(13-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADXY01000052 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1446 NA genomic_DNA NA HL036PA3 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765108 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADXY01000052.1 ATGGCGTCGAATGGTCATGCGCGCGTAGAGATGAAGCCTGGTGATTCCGGGTCAGCTGGTGCGACGAGAAATAGTCAGACGAGCTGGGCCGTCTTCATTGCGGTGACGGCAGCAGCCCTGGGAATCACTTATGGTTATGATATTTCTAATACCGCGGCCGCTTTGCAATTTGTACAGCGAGACTTTGGTATCTATAGCGCCATCAACACGGCCTCCGTGGTAGGTCAAATAGCAGGTGCCATTCTTGGCGGCCCTATGGCGAATGCCATCGGACGTAAGAAGTCAATGCTGGTTATCGCGGCTGGATATACTATTTTCGCTATCCTGACAGCAATCTCCCCGTCCGCTGGACTGTTCCTTGCTATGCGGGTTCTGTTGGGTATCACTATCGGGCTTTCCATTACCGTCGTGCCGGTGTTTATCGCCGAATCCGCTCCGGCGTCGCGGCGGGGCGGGCTGGCAACCGCGTATCAAGTGACGTGCGTCGTCGGAATCATCTTGGGGTACCTCGTCGGTTATTCCCTGCTGCCTACGGACACGTGGCGTTGGATTCTCGGTGTCGCAGCCGTCCCAGCATTTATTGTGCTCCTGATGCTTGTTCGCACCCAGGAAACCCCCTCCTGGTACATGCTCAAGGGGCGTGAAGATGAGGCTCGTCGTGCCATGGAGCGCATCGAGGTTGCTGAATTGGTTGAGCCGAGCCTCGATGAGATCCGCAACTCGTTGTCTTCTCGGCCCTCTGGATCTGTATGGGGGCGGTTGCGTGAGATGTTCCATGGGGGCATGGCTCGTGCCACGATCTTTGCTATCGTTCTGGGATTTTCAATCCAGATCACTGGAATTAATGCAACAATCTATTATGCGCCTGGAATCTATTCGCGAATGGGATTTACTGACACTGCGACAACCTATCTGGTGCCATCCTTGGTGCAGTTCCTATCATTGATAAGTGTTGTCATCTCGATGCTCGTTATTGATAAGGTAGGGCGTCGATTCGTTCTTATCACGGGAATATCTACGATGATTGTAGCGACTATCGTGCTCATCGTGACATATTTGGCGAGTGGTTTTGAAGGTGCTGTTGCCGGTATTATTGGCCTCGTTGGGATGTCCCTTTTTACTATGGGGTTTACTTTCGGTTTCGGTTCCATCGTATGGGTTTACGCGGGTGAGATTTTCCCGGCTCGCTACCGCTCACTCGGTGCATCTCTGGTGCTTACGGCAGACTTGATCGCGAATGCGATCACTGCCCAATTGGGAGCTGCGATGCTCGACGGTATCGGGCTGGCAGGAACATTCGGGGTCTACGGTGGGCTCCTCGTCGTTGCGCTGCTATTCCTGCTGAGGTACGCCCCGGAAACGTCCGGTCGCTCGCTTGAGGAGATCCAGGACTATTGGAACAACGGTGCTCGGTGGCCCAAGGCTGACTCGCCTTCGATGGGGTGA > 856 HMPREF9577_01052 KEGG:_dfe:Dfer_2102_1.6e-41_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFT26313.1 11 MAANIPLTNTASLTPDTQLASAPISPESRRFLRHVTAATAFGGGLDGFDLGVISVVILHINHDLELTPAMEGLVGAASLLGIFIGAPLFGFLTDKFGRRRMFLVDIIAFIVIGAGQAFATGGVSLGILRFLLGMAIGAEYSIGAPMLSEFVPARERGSKLAFLELCWRIGFLIAVLLGYALLWSGVSWKVILATSVIPALIVLGLRIGLPESPRWLLRHGREAEAREIVEKHMGPKYFAAEQLSEESVDGEGYRKLFRKGQRRRTIFVCIFWTCIVTPYFAIFTYAPKVLESLNVKSQAGGTILSNTIGVVGAVVGLLAIDRIGRRRMLIGPFWMQTAVLLIVGLWTDAPPWVLVVGLALFALVNSYSDILTAVYPSEIFDTDIRSSGVGFGSAVSRIGAFLGTYLLPIGIGTIGVKWCMVIAAGLCVVGAVTGQTLAPETMNRPLTKTATGELSHADPGPGAQADSPNGRYIQLWMPDPVSQDFQTLATTIGARARAVSMLLSLVRSSTSVTGTKATLPAVLPGRDAQTSSSFPWCITRSQLCPV high_GC_Gram+ Propionibacterium_acnes_HL110PA3 Propionibacterium_acnes_HL110PA3 ADYG01000043 3708..5348 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1641 Propionibacterium_acnes_HL110PA3_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL110PA3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.3xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL110PA3_P_acnesHL110PA3-1.0_Cont652.3,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4B8X7_PROAC.gb Propionicibacterium 302184461 Submitted_(06-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYG01000043 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1641 NA genomic_DNA NA HL110PA3 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765079 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYG01000043.1 TCACACCGGACACAGCTGGCTCCGGGTGATACACCAGGGAAAAGAGCTCGACGTCTGCGCGTCACGACCCGGTAACACCGCTGGTAACGTCGCCTTCGTCCCCGTCACCGAGGTACTCGATCGCACCAGGCTCAATAGCATTGATACCGCCCTCGCTCTGGCCCCGATCGTTGTTGCTAGTGTCTGGAAATCCTGGCTGACGGGATCGGGCATCCAGAGTTGGATGTACCGCCCATTTGGGCTGTCAGCCTGAGCGCCGGGCCCAGGGTCAGCATGTGACAACTCTCCGGTTGCCGTTTTCGTCAGGGGCCGGTTCATGGTCTCAGGTGCCAGCGTCTGGCCGGTCACAGCGCCAACGACGCATAGACCTGCCGCGATGACCATGCACCACTTGACCCCGATTGTCCCGATGCCAATGGGCAGCAGGTAGGTGCCAAGGAAGGCACCAATGCGGCTGACTGCCGACCCGAACCCTACGCCACTGGATCGAATGTCGGTGTCGAAGATCTCAGAAGGGTACACCGCAGTAAGAATGTCGCTGTAGGAGTTGACCAAGGCGAAAAGAGCCAAGCCCACCACCAGCACCCACGGCGGCGCGTCGGTCCACAGCCCGACAATCAACAAGACTGCGGTCTGCATCCAGAACGGCCCGATGAGCATACGTCGGCGGCCGATGCGATCGATCGCCAGCAGACCGACGACCGCGCCAACGACGCCAATGGTATTGGAGAGGATCGTGCCGCCGGCTTGAGACTTCACGTTGAGGGATTCCAGCACTTTCGGAGCGTAGGTGAAGATCGCGAAATACGGGGTGACGATGCACGTCCAGAAAATACAGACGAAGATCGTGCGCCGCCGTTGACCCTTGCGGAACAGCTTGCGGTAGCCTTCCCCGTCCACCGACTCCTCGCTGAGCTGTTCGGCGGCGAAGTATTTCGGACCCATGTGCTTTTCGACGATCTCACGTGCTTCGGCCTCACGGCCGTGACGCAGCAACCAGCGCGGGGATTCTGGAAGACCGATTCGCAGCCCAAGCACAATGAGGGCTGGGATTACTGAAGTGGCCAAGATGACTTTCCACGACACTCCAGACCACAGCAGCGCATACCCCAATAGGACAGCGATAAGGAAGCCGATGCGCCAGCATAGTTCGAGGAAGGCCAGCTTCGATCCACGCTCCCGGGCCGGAACAAACTCTGAAAGCATCGGTGCTCCGATCGAGTATTCGGCTCCGATGGCCATCCCTAAAAGGAATCTGAGGATCCCTAGGGAGACTCCACCCGTCGCGAAAGCCTGCCCGGCGCCGATAACGATGAAAGCAATAATGTCGACGAGGAACATCCTGCGGCGTCCGAACTTATCGGTGAGGAAGCCGAAGAGTGGGGCACCAATGAAGATGCCCAGTAGGCTCGCGGCACCGACGAGCCCCTCCATAGCGGGGGTGAGCTCGAGGTCGTGATTGATGTGCAAGATGACCACGCTAATGACGCCCAGGTCGAAGCCGTCGAGCCCGCCACCGAAAGCGGTGGCGGCTGTGACATGGCGCAGGAAACGTCTGGATTCGGGGGAGATTGGTGCTGACGCCAATTGCGTGTCGGGCGTCAAACTGGCGGTGTTCGTAAGCGGGATGTTGGCGGCCAT > 857 HMPREF9621_00926 KEGG:_rcm:A1E_04550_7.0e-18_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS74650.1 11 MTPTPLHPSSPRRKKPADQAPTPDGKHDAPGQNLHGHRRLQVEDVTVVERGPMRQAIAGTIVGNLMEWYDVGVYGYLAVLIGRVFLPEAAPSVKSLFSLGVFAVTFVARPLGGIILGQLGDRLGRHRVLALTLTMMSASTFLIGILPDYSVIGAWAPILLIVLKLAQGFSTGGEYAGATTFITEYAPDRHRGFYASLLDLGSYLGFANGAAVVSSLQLTMSGAAMEGYVWRVPFLIALPLALIAIYFRLKIEDSPAYLQAQAGVANRNQNPTKGIAGLVRSYWREILTAFVLVAAANTLGYAVTSYMPTYLTTTLGYDTVHGNLLTLPVLVLMSLGIPVAGALSDRIGRRPVLFGGSVGAIFLAIPAFLLMMHGQLWLTLLGLFLLAVPVALYVSNLASALPALFPTSSRYGGMGMSYNLAAALFSGTAPFIMEALVTVTGDRLAPAYWIMGTSMAGFIAVRVMGESAGKPMPGAMPTVLTHEEAHHLVETQDENPDLDIEKVLRDAGELD high_GC_Gram+ Propionibacterium_acnes_HL037PA2 Propionibacterium_acnes_HL037PA2 ADYH01000021 71296..72831 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1536 Propionibacterium_acnes_HL037PA2_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL037PA2_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_63.6xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL037PA2_P_acnesHL037PA2-1.0_Cont30.3,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4BG18_PROAC.gb Propionicibacterium 302184541 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYH01000021 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1536 NA genomic_DNA NA HL037PA2 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765123 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYH01000021.1 TCAGTCGAGTTCGCCGGCGTCTCTAAGCACCTTCTCGATGTCCAGGTCGGGGTTCTCATCCTGGGTCTCCACGAGATGATGGGCTTCCTCGTGAGTGAGAACGGTGGGCATTGCACCGGGCATCGGCTTGCCGGCACTCTCCCCCATGACGCGCACCGCGATGAATCCGGCCATCGACGTTCCCATAATCCAATACGCTGGAGCAAGCCGGTCCCCGGTAACGGTGACCAAAGCTTCCATGATGAATGGTGCCGTACCGGAGAACAGCGCAGCCGCAAGGTTGTATGACATTCCCATACCGCCATAGCGCGACGACGTGGGAAACAGTGCTGGCAGCGCGGATGCGAGGTTCGACACGTACAGGGCGACAGGCACGGCGAGCAGGAAAAGACCCAGCAGGGTCAACCACAACTGCCCGTGCATCATGAGCAGAAATGCCGGAATGGCCAGGAAGATGGCACCCACCGATCCGCCGAACAGCACGGGCCTGCGTCCGATCCGATCCGATAGTGCTCCGGCAACCGGTATACCCAAGCTCATAAGGACGAGCACCGGCAGGGTTAGCAGGTTTCCGTGCACGGTGTCGTAGCCCAGTGTCGTCGTCAGGTAAGTGGGCATATATGAGGTGACGGCGTAGCCGAGCGTGTTAGCGGCCGCGACTAGGACGAAGGCGGTGAGGATTTCACGCCAATAGCTGCGTACCAGGCCAGCGATCCCCTTGGTCGGGTTCTGATTGCGATTGGCGACTCCGGCCTGGGCCTGCAAATAGGCTGGTGAATCCTCAATCTTCAAGCGGAAATAGATGGCGATCAACGCGAGGGGCAAGGCGATAAGAAATGGTACGCGCCACACATATCCCTCCATCGCCGCACCCGACATGGTGAGCTGGAGCGACGACACGACGGCCGCACCGTTGGCAAATCCCAAGTAGGAACCGAGGTCAAGCAGCGAGGCATAAAACCCTCGATGCCTATCGGGAGCGTACTCGGTGATGAACGTCGTCGCCCCGGCGTACTCGCCGCCGGTCGAGAAACCCTGGGCGAGCTTAAGGACGATGAGCAAAATGGGCGCCCATGCTCCGATGACCGAATAGTCGGGCAGAATGCCAATAAGGAAGGTTGAGGCCGACATCATGGTGAGGGTGAGGGCAAGCACTCTGTGACGGCCTAAGCGGTCGCCTAGCTGCCCCAAGATGATTCCACCAAGTGGTCTCGCAACGAAGGTCACTGCGAACACGCCGAGTGAAAAGAGACTCTTGACGGATGGTGCGGCCTCGGGAAGGAAGACACGGCCGATGAGCACGGCCAGATACCCATAAACGCCGACGTCATACCACTCCATGAGATTGCCAACGATGGTCCCGGCAATGGCTTGGCGCATGGGCCCACGCTCGACGACGGTGACATCTTCCACCTGCAGTCGACGATGTCCATGAAGGTTCTGACCCGGCGCATCGTGCTTGCCATCTGGCGTCGGAGCCTGGTCCGCAGGCTTCTTGCGGCGGGGGGAGGAGGGGTGAAGGGGAGTCGGTGTCAT > 858 HMPREF9621_01678 KEGG:_gdj:Gdia_1773_7.2e-14_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS73843.1 11 MSNVEAMAARKSWRDELTGTQWKSFWAAWIGYLLDGFDFVMITLVLTEIGRTFHVGPAATATLVSAAFIARWFGGLLLGAIGDRIGRKEAMVISILLYAGGSVACAIAPAFWVIFVARVCIGMGMAGEYGSSATYVIESWPVRLRNKASGFLISGFSLGAGVTAQVYALIEYLTRGTSAEPYTWRILFALGIIPIALALWLRRALPEATDFVKMREEQAARAVVGEAVEKTDMFTMLFARTPKRSIINIVLALTTFGCLIVIYLFKSGVPGLVLALLWIVVVAVMVSFMAQFEGPRWPTGVAVMITVFVAFLYSWPLQALLPTYYRQTLGLASDTASNLVTATSFGAAAGCIMAGFIGDKFGTRKAYWVSLLISEFLVLPVFLVSRDMVHSSTIWVVLLGVFIFAQQMFGQGISGLLPKFISNYFPVEKRAAGLGFSYNVGALGGAIAPVLGIALAGDPATGVGGALPSSWGLGWTLFILSFAFTAVIIILIAINFPYRVQKLLRPDHVRPADRMDHVDEELAVSRDPDTIVAS high_GC_Gram+ Propionibacterium_acnes_HL037PA2 Propionibacterium_acnes_HL037PA2 ADYH01000037 4429..6033 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1605 Propionibacterium_acnes_HL037PA2_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL037PA2_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_63.6xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL037PA2_P_acnesHL037PA2-1.0_Cont53.3,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4BI57_PROAC.gb Propionicibacterium 302184525 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYH01000037 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1605 NA genomic_DNA NA HL037PA2 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765123 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYH01000037.1 ATGAGCAACGTCGAGGCCATGGCGGCTAGGAAATCATGGCGTGACGAGTTGACCGGCACGCAGTGGAAATCGTTCTGGGCGGCATGGATCGGTTATCTGCTGGACGGATTCGACTTCGTCATGATCACGCTGGTCCTCACCGAGATCGGCAGGACCTTTCACGTCGGACCAGCGGCGACTGCGACCCTGGTGTCCGCTGCCTTTATTGCGCGATGGTTTGGCGGGCTGCTGCTGGGAGCTATCGGCGACCGGATAGGCCGCAAGGAAGCCATGGTCATCTCGATTTTGCTTTATGCGGGTGGATCGGTCGCCTGTGCCATTGCCCCGGCTTTCTGGGTCATCTTCGTTGCCCGCGTCTGCATCGGCATGGGTATGGCCGGTGAGTACGGCTCTTCAGCCACCTACGTCATTGAGTCCTGGCCAGTGCGTCTGCGGAATAAGGCCTCCGGGTTCCTTATTTCCGGATTCTCTCTCGGTGCCGGTGTAACGGCTCAGGTATATGCCCTCATCGAGTACCTTACCCGTGGCACCTCCGCTGAGCCTTATACCTGGCGAATCCTCTTCGCGCTTGGCATTATCCCGATCGCCTTGGCCCTGTGGCTGCGTCGTGCCCTTCCTGAGGCCACCGACTTTGTAAAAATGCGCGAGGAACAGGCCGCTCGGGCCGTTGTCGGCGAAGCCGTCGAGAAGACCGACATGTTCACCATGCTCTTCGCACGTACCCCGAAGCGAAGCATCATTAACATTGTCCTGGCCCTCACAACGTTCGGATGCCTAATCGTCATTTACCTGTTCAAGAGCGGCGTCCCGGGGCTCGTGTTGGCACTGCTGTGGATCGTCGTCGTGGCTGTCATGGTGAGCTTCATGGCCCAGTTCGAGGGACCGCGTTGGCCGACAGGTGTGGCCGTCATGATCACGGTGTTTGTCGCCTTCCTCTACTCCTGGCCTTTGCAGGCCCTGTTGCCCACCTACTATCGCCAGACTCTGGGCCTGGCCAGCGACACCGCTTCGAATCTCGTGACCGCCACTTCTTTTGGCGCCGCTGCGGGCTGCATCATGGCCGGATTCATCGGTGACAAATTCGGCACCCGCAAGGCCTATTGGGTCTCCTTGCTCATTTCGGAGTTCCTCGTTCTGCCGGTCTTCCTTGTTAGCCGGGACATGGTGCATTCCTCAACAATATGGGTCGTGCTCCTCGGAGTCTTCATCTTTGCCCAGCAGATGTTCGGACAGGGCATCTCTGGTCTGCTGCCGAAGTTCATTTCGAACTACTTCCCGGTTGAGAAACGTGCTGCTGGCTTGGGCTTCTCTTATAACGTCGGAGCTCTCGGTGGGGCCATCGCCCCGGTCCTCGGCATTGCCCTGGCAGGTGATCCAGCTACCGGTGTCGGCGGTGCGCTGCCCTCCAGCTGGGGCCTCGGATGGACCCTGTTCATCCTGTCTTTCGCATTCACCGCGGTGATCATCATTCTCATCGCCATCAATTTCCCGTACCGGGTGCAGAAACTGTTGCGCCCCGACCACGTGCGTCCCGCCGACCGGATGGATCACGTCGATGAAGAGCTCGCGGTTTCCCGGGATCCTGACACTATCGTCGCCTCGTGA > 859 HMPREF9617_02522 KEGG:_cai:Caci_8679_8.1e-26_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS70251.1 11 MFLTIWWSVWVYPAHAIPTWRRTAVSDAQATERTITSLIPARIDRLPWSTFHTMVIVGLGTAWILDGIEVQIVAANGFAKPLHMSTTEVTAAATFYLLGQVLGALFFGKLTDRIGRKKLFTLTLLVYLLGSGIAGLSFSTWFLYVCRFIAGSGIGGEYSAINSAIDELIPAQYRGRVDLSVNGTYWAGVMLGSVATIYLLDPTKVAEFWGWRIGFFIGPVLGIVVILIRKHIPESPRWMLTHGYGEQAEEIVAGIEQDVRESGHELEPVSDDQAITLEPEVRRQGRRNFSQRWVEFKESGAELVEVFLRRYWKRTVLGVTLMVTQSFLYNAIFFTYEIVLSQFYSVSKSDVGLYMIPFAVGNLLGPILLGRFFDTVGRRKMIFATYGIAALVLAISAILFQRDALTPTTHTIFWCVAFFFASAGASSAYLTVSEIFPLEVRGQAISYFFSIAQIAGAIAPFIFGNLIGDGSSRGPLVGGYFIGAGIMLTGGLVALFMGVDAEGKGLEAITDPLSRDRAKKSAARQAE high_GC_Gram+ Propionibacterium_acnes_HL056PA1 Propionibacterium_acnes_HL056PA1 ADYI01000045 33968..35551 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1584 Propionibacterium_acnes_HL056PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL056PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_67.1xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL056PA1_P_acnesHL056PA1-1.0_Cont1777.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4BTP3_PROAC.gb Propionicibacterium 302184564 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYI01000045 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1584 NA genomic_DNA NA HL056PA1 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765119 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYI01000045.1 TCACTCCGCTTGACGGGCGGCGGACTTCTTGGCACGGTCACGGCTGAGCGGATCAGTGATGGCCTCCAGACCCTTGCCCTCGGCGTCAACGCCCATGAACAAAGCGACGAGACCACCGGTAAGCATGATGCCGGCACCGATGAAGTAACCGCCGACAAGGGGGCCGCGCGAGGAACCGTCACCGATGAGGTTACCGAAGATGAATGGAGCGATAGCACCGGCAATCTGGGCGATCGAGAAAAAGTAGCTAATAGCCTGGCCACGAACTTCCAGCGGGAAAATCTCAGACACTGTCAGATAGGCCGAGGAAGCTCCGGCACTAGCAAAAAAGAAAGCGACGCACCAGAAGATAGTGTGGGTGGTCGGCGTCAGGGCGTCACGCTGGAACAGTATCGCACTGATAGCCAGCACTAGAGCAGCTATTCCGTAGGTGGCGAAAATCATCTTACGTCGACCAACAGTGTCGAAGAATCGTCCCAGTAGAATTGGGCCGAGTAGGTTTCCGACCGCGAATGGGATCATATATAAGCCGACGTCAGATTTAGACACTGAATAGAACTGCGACAGCACGATCTCATAGGTGAAAAAGATGGCGTTGTACAGGAAGGACTGGGTCACCATAAGGGTGACACCCAGCACAGTGCGCTTCCAATAGCGACGCAGGAACACCTCGACCAGCTCAGCACCAGACTCCTTAAACTCTACCCAACGCTGGGAGAAGTTGCGGCGACCTTGACGCCTCACCTCGGGTTCCAAGGTGATGGCCTGGTCGTCGCTAACCGGCTCAAGTTCATGCCCCGACTCCCGAACATCCTGCTCGATCCCGGCAACGATCTCTTCGGCCTGCTCACCGTAACCGTGCGTCAGCATCCACCGAGGCGACTCCGGAATGTGCTTACGAATAAGGATGACAACAATGCCGAGAACCGGACCAATAAAGAAGCCAATACGCCAGCCCCAAAACTCCGCGACCTTCGTCGGGTCAAGGAGGTAAATAGTGGCGACCGAACCGAGCATGACGCCAGCCCAGTAGGTGCCATTGACAGACAAGTCCACCCGACCGCGATACTGGGCTGGAATGAGCTCATCGATGGCCGAGTTGATCGCTGAATATTCACCACCAATACCAGATCCAGCAATAAACCGGCACACATAGAGGAACCACGTCGAGAAGGACAAACCTGCAATACCCGAACCAAGAAGGTAAACCAGGAGAGTCAGAGTGAAGAGTTTCTTTCGACCAATACGGTCGGTAAGTTTGCCGAAGAAGAGAGCACCAAGTACTTGGCCAAGCAGGTAGAAGGTTGCTGCCGCGGTAACCTCGGTGGTGGACATGTGCAGCGGTTTTGCAAAGCCATTTGCTGCGACGATCTGCACCTCAATACCGTCGAGGATCCACGCTGTTCCTAGACCGACGATAACCATGGTGTGAAATGTCGACCACGGCAGCCGGTCGATACGGGCCGGTATCAGTGATGTGATCGTTCGCTCAGTGGCTTGGGCGTCTGACACAGCGGTCCTCCTCCATGTGGGGATGGCGTGAGCAGGGTATACCCACACACTCCACCAAATAGTGAGAAACAT > 860 HMPREF9616_00756 NA MFS_transporter,_sugar_porter_family_protein EFS69664.1 11 MSVTSRIEVAELVETTQPAGPKRRMGVVAAVATLGSLLFGYDTGVISGALPFMYLPHGAGGLALTVGHEGAIGGTLTLGAAFGGLIGGMMSDRWGRRHNLLILAVLFVVGALGTAGAPSVWVMYPFRVVLGFAVGAASATVPVYLSETSPKRMRGRIVALDQFMIVFGQLLAFSVNAAISAAHGGPSLMVTADPTGRLSPGTYSWDTLQAMTTSHGGAMTDQAFHAFLTQLSVSAGSGGAWRWMLVVCTLPAIALWIGMRKMPESARWHLSHGQLRETVACLKQVRVEGVDEPIVDEVTEMVELNGEGGRLSHRQQWAVVMESRWTRRLLLVGIFLAVVNQTTGVNTVMYYAPKVLEFAGMSTQASIISQVANGVMSVIGAAAGLWLIERFDRRHLLIFDVTAVGVCLLGIAATFGLAIAPHVGQGVPKWAPILVLVLMSIFMLIVQSTNGTVVWTMLGEMFPTRMRGAMNGAAVFCGWLANATITWTFPAMLAGLGGAGTYLTYGLVNLMIALVLVKVMPETKGRSLEEIEVEMKQRYA high_GC_Gram+ Propionibacterium_acnes_HL007PA1 Propionibacterium_acnes_HL007PA1 ADYJ01000006 251404..253026 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1623 Propionibacterium_acnes_HL007PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL007PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL007PA1_P_acnesHL007PA1-1.0_Cont2.4,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4BVZ5_PROAC.gb Propionicibacterium 302224965 Submitted_(13-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYJ01000006 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1623 NA genomic_DNA NA HL007PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765118 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYJ01000006.1 TTGTCCGTGACATCGAGAATCGAGGTGGCCGAGCTCGTTGAGACAACGCAGCCGGCTGGCCCGAAGCGCCGTATGGGTGTAGTGGCCGCAGTCGCTACCCTGGGTTCACTTCTTTTCGGCTACGACACCGGAGTCATTTCTGGCGCCTTGCCGTTCATGTATCTGCCTCATGGCGCTGGCGGTCTGGCCCTGACGGTGGGACATGAAGGTGCCATCGGTGGCACCTTAACCCTTGGCGCTGCTTTCGGCGGCCTTATAGGCGGGATGATGAGCGACCGCTGGGGTCGGCGTCATAACCTCCTGATTTTGGCTGTCCTCTTTGTTGTGGGAGCTTTGGGAACTGCCGGTGCCCCCAGCGTGTGGGTGATGTACCCCTTCCGAGTGGTGCTCGGATTCGCCGTGGGAGCGGCCTCAGCAACAGTGCCAGTCTACTTGTCGGAGACCTCACCCAAACGGATGCGTGGGCGGATCGTGGCGCTTGACCAATTTATGATCGTCTTTGGTCAGCTGCTGGCTTTCTCCGTCAATGCCGCCATCTCAGCGGCTCATGGGGGACCCAGTTTGATGGTGACTGCGGATCCGACGGGACGACTGTCTCCGGGAACTTATTCCTGGGACACTTTGCAGGCCATGACGACCTCCCACGGGGGAGCGATGACCGACCAGGCTTTTCATGCCTTCCTTACTCAGCTGTCGGTATCAGCCGGGTCCGGTGGAGCATGGCGCTGGATGCTCGTGGTATGCACTCTGCCCGCCATCGCGCTGTGGATCGGTATGAGGAAGATGCCCGAGTCGGCTCGTTGGCATCTAAGCCATGGTCAGCTTCGGGAGACCGTCGCATGCCTCAAACAGGTGCGCGTCGAAGGGGTTGATGAACCCATCGTCGATGAGGTCACTGAGATGGTTGAACTCAACGGCGAGGGCGGCAGGCTCAGTCACCGTCAGCAGTGGGCGGTCGTCATGGAGTCTCGCTGGACGCGTCGCCTCCTGCTGGTCGGGATTTTCCTTGCTGTAGTTAACCAAACCACCGGCGTCAATACCGTCATGTATTACGCGCCCAAGGTGTTGGAGTTCGCAGGAATGAGCACCCAGGCGTCGATTATTTCTCAGGTGGCTAATGGAGTCATGTCTGTTATTGGTGCCGCTGCAGGCTTGTGGCTCATCGAACGGTTTGATCGTCGTCACCTGCTTATCTTCGATGTCACGGCGGTCGGTGTGTGTCTCCTTGGTATTGCGGCTACTTTCGGGCTGGCAATTGCTCCTCATGTGGGTCAAGGGGTACCGAAGTGGGCGCCTATTCTCGTGCTCGTCCTGATGAGTATCTTCATGCTTATCGTGCAGTCCACTAACGGCACAGTGGTGTGGACCATGCTTGGTGAGATGTTCCCGACCCGGATGCGCGGGGCGATGAACGGTGCTGCGGTGTTTTGTGGGTGGCTGGCTAATGCGACGATCACCTGGACCTTCCCGGCCATGCTGGCGGGGCTCGGCGGTGCGGGAACCTACCTGACCTATGGCCTGGTAAACCTCATGATCGCGTTGGTCCTCGTCAAGGTCATGCCGGAGACCAAGGGACGCTCACTGGAGGAGATCGAGGTCGAGATGAAGCAGCGCTACGCCTAA > 861 HMPREF9616_00848 KEGG:_gdj:Gdia_1773_2.6e-15_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS69245.1 11 MSNVEAIAARKSWRDELTGTQWKSFWAAWIGYLLDGFDFVMITLVLTEIGRTFHVGPAATATLVSAAFIARWFGGLLLGAIGDRIGRKEAMVISILLYAGGSVVCAIAPAFWVIFVARVCIGMGMAGEYGSSATYVIESWPVRLRNKASGFLISGFSLGAGVTAQVYALIEYLTRGTSAEPHTWRILFALGIIPIALALWLRRALPEAADFVKMREEEAARAAVGETVKKTDMFTMLFARNPKRSIINIVLALTTFGCLIVIYLFKSGVPGLVLALLWVVVAAVMVSFMVQFEGPRWPTGVAVMITVFVAFLYSWPLQALLPTYYRQTLGLASDTASNLVTATSFGAAAGCIMAGFIGDRFGTRKAYWVSLLISEFLVLPVFLVSRGMVHSSVIWVVLLGVFIFVQQMFGQGISGLLPKFISNYFPVEKRAAGLGFSYNVGALGGAIAPVLGIALAGDPATGVGGVLPSSWGLGWTLFILSFVFTAVIIVLIAINFPLRMQKLLRPDHVRPADRMDHVDEELAVSRNPDTIVAS high_GC_Gram+ Propionibacterium_acnes_HL007PA1 Propionibacterium_acnes_HL007PA1 ADYJ01000007 15959..17563 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1605 Propionibacterium_acnes_HL007PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL007PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL007PA1_P_acnesHL007PA1-1.0_Cont3.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4BW83_PROAC.gb Propionicibacterium 302224964 Submitted_(13-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYJ01000007 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1605 NA genomic_DNA NA HL007PA1 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765118 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYJ01000007.1 TCACGAGGCGACGATAGTGTCAGGGTTCCGGGAAACAGCAAGCTCTTCATCGACGTGATCCATCCGGTCAGCGGGACGCACGTGGTCGGGGCGCAACAGCTTCTGCATCCGGAGCGGGAAATTGATGGCGATAAGAACGATGATCACCGCGGTGAATACGAAGGACAAGATGAACAGGGTCCATCCGAGGCCCCAGCTGGAGGGCAGCACACCGCCAACACCGGTAGCTGGATCACCTGCCAGGGCAATGCCGAGGACCGGGGCGATAGCCCCACCAAGAGCTCCGACGTTATAAGAGAAACCCAAACCAGCAGCGCGCTTCTCGACCGGAAAGTAGTTCGAAATGAACTTCGGTAGCAGACCAGAGATACCTTGTCCGAACATCTGCTGGACAAAGATGAAAACTCCAAGAAGCACGACCCATATCACCGAGGAATGCACCATGCCTCGGCTGACGAGGAAGACCGGCAGGACGAGGAACTCCGAGATGAGCAGGGAGACCCAATAGGCCTTGCGGGTTCCGAATCTGTCACCGATAAATCCGGCCATGATGCAGCCCGCTGCCGCGCCAAAAGAAGTGGCGGTCACGAGATTGGAAGCGGTGTCGCTCGCCAGGCCCAGGGTTTGGCGATAGTAGGTAGGCAACAGAGCCTGCAAAGGCCAGGAGTAGAGGAAGGCGACAAACACCGTGATCATAACGGCCACACCTGTCGGCCAACGCGGTCCCTCGAACTGGACCATGAAGCTCACCATGACGGCCGCGACAACGACCCACAGCAATGCCAACACGAGCCCCGGGACGCCGCTCTTGAACAGGTAAATGACGATTAGGCATCCGAAAGTTGTGAGGGCCAGAACAATGTTAATGATGCTTCGCTTCGGGTTACGTGCGAAGAGCATGGTGAACATGTCAGTCTTCTTGACAGTCTCGCCGACAGCGGCGCGAGCGGCCTCCTCCTCGCGCATTTTTACAAAGTCGGCGGCCTCAGGAAGGGCACGACGCAGCCACAGGGCCAAGGCGATCGGAATAATGCCAAGCGCGAAGAGTATTCGCCAGGTATGAGGCTCAGCGGAGGTACCACGGGTAAGGTACTCGATGAGGGCATACACCTGAGCCGTCACACCGGCGCCAAGGGAAAATCCGGAAATAAGGAACCCGGAGGCCTTATTCCGCAGACGCACTGGCCAGGACTCAATGACGTAGGTGGCTGAAGAGCCGTACTCACCGGCCATACCCATGCCGATGCAGACACGGGCGACGAAGATAACCCAGAAAGCCGGGGCAATGGCACAGACGACCGATCCACCCGCATAAAGCAGAATTGAGATGACCATAGCCTCCTTGCGGCCGATCCGGTCACCGATAGCTCCCAGCAGCAGTCCGCCGAACCATCGCGCAATAAAAGCAGCGGACACCAGGGTCGCAGTCGCCGCTGGTCCGACGTGAAAGGTCCTGCCGATCTCGGTGAGGACCAGCGTGATCATGACGAAGTCGAATCCGTCCAGCAGATAACCGATCCATGCTGCCCAGAAGGATTTCCACTGCGTGCCAGTCAACTCGTCACGCCATGATTTCCTGGCTGCTATGGCCTCGACGTTGCTCAT > 862 HMPREF9616_01890 KEGG:_dfe:Dfer_1599_7.1e-32_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS68496.1 11 MSTSTTPKQSALDLIDSRPLTRNQKNLVALAVVGNISEFFDIFLIGFVVSVLTKPWNLTGTEAGVILACSGLGTVIGAIMWGRLADKIGRRSSFFWCVLLFVVFTVVSVFTPDRGWIMLAILRIGVGIGVGGLNITSIPYVQEFVPAKQRGLLAGLASVFIPLGLFLGSLAQNALGDNWRALIALGAIPVFLLVWIRFVPESPRFLQSHGRDKEAREALAWALDMPADDIGDLPAVEHVQDASYSLVFGKYRKSLLIVSLGSFCFILGSFTIQSWGQTLLKTGFGKSPEQVGTLFMFVSLADLIGRFLSAWLADRIGRRATMLSFGLIGAGGTLIIALSARLGWGWQIFFVGVLIAMAFADGAFGILNAFGAEQFPNEARSTGLGLGYGIGATAKIIGPALMGLMVGGSAVKQNVTLDAVFPAFILFAVLLVIGGMTYMFARETRGTSLDTI high_GC_Gram+ Propionibacterium_acnes_HL007PA1 Propionibacterium_acnes_HL007PA1 ADYJ01000025 155548..156906 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1359 Propionibacterium_acnes_HL007PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL007PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL007PA1_P_acnesHL007PA1-1.0_Cont23.3,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4BZ47_PROAC.gb Propionicibacterium 302224946 Submitted_(13-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYJ01000025 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1359 NA genomic_DNA NA HL007PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765118 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYJ01000025.1 ATGTCCACCTCAACAACACCCAAACAATCAGCTCTAGACCTCATCGATTCGCGTCCCTTAACGCGCAATCAGAAGAATCTTGTTGCCCTAGCCGTCGTCGGAAATATCTCCGAGTTCTTTGATATCTTCCTCATTGGTTTCGTCGTATCCGTCCTGACTAAGCCATGGAATCTGACTGGCACTGAGGCGGGCGTCATTCTCGCCTGTTCCGGTCTGGGGACGGTCATTGGTGCCATCATGTGGGGACGTCTTGCCGACAAGATCGGACGCCGCTCCTCTTTCTTCTGGTGCGTGCTCCTGTTCGTCGTGTTCACTGTAGTATCAGTGTTCACCCCAGATCGTGGCTGGATTATGCTCGCCATTTTGCGTATTGGCGTGGGGATCGGAGTCGGCGGACTTAATATCACCTCGATTCCCTACGTCCAGGAGTTCGTGCCTGCTAAGCAGCGCGGTCTTCTTGCCGGCCTGGCGTCGGTATTCATCCCCCTCGGTCTGTTCTTGGGGTCGTTAGCACAAAATGCACTGGGCGATAATTGGCGTGCCCTCATCGCTTTGGGCGCCATTCCTGTTTTCCTGCTGGTGTGGATCCGTTTCGTGCCCGAATCACCACGGTTCCTACAGAGTCATGGGCGTGATAAGGAAGCACGCGAGGCCCTAGCCTGGGCACTCGATATGCCCGCTGACGACATTGGAGATTTGCCTGCCGTTGAACACGTCCAAGACGCTTCCTACTCACTTGTCTTTGGTAAATACCGCAAGAGTCTTCTCATCGTCAGTCTGGGATCATTCTGCTTCATTCTGGGCTCTTTTACGATTCAGTCGTGGGGCCAGACCCTGCTCAAGACCGGCTTTGGCAAGTCTCCCGAGCAAGTCGGGACCCTGTTCATGTTCGTTTCCCTGGCCGATCTCATCGGGCGCTTCCTATCAGCATGGCTGGCAGACCGCATTGGTCGGAGAGCCACCATGTTGTCGTTTGGCCTCATCGGTGCTGGCGGGACTCTCATCATCGCCCTTTCGGCCCGCCTGGGTTGGGGCTGGCAGATCTTCTTCGTCGGTGTCCTCATTGCGATGGCCTTCGCCGACGGCGCCTTCGGCATCCTCAATGCTTTCGGCGCCGAGCAATTCCCCAACGAAGCTCGCTCGACTGGTCTGGGACTGGGCTACGGCATCGGCGCCACCGCCAAGATCATCGGTCCGGCGCTTATGGGACTCATGGTGGGCGGATCTGCCGTCAAGCAGAATGTCACCCTGGACGCGGTATTTCCGGCATTCATCCTGTTCGCTGTGCTGCTAGTCATTGGCGGTATGACGTACATGTTTGCCCGCGAAACTCGTGGCACCTCGCTCGACACGATCTGA > 863 HMPREF9587_00939 KEGG:_gdj:Gdia_1773_9.1e-16_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS51588.1 11 MSNVEAIAARKSWRDELTGTQWKSFWAAWIGYLLDGFDFVMITLVLTEIGRTFHVGPAATATLVSAAFIARWFGGLLLGAIGDRIGRKEAMVISILLYAGGSVVCAIAPAFWVIFVARVCIGMGMAGEYGSSATYVIESWPARLRNKASGFLISGFSLGAGVTAQVYALIEYLTRGTSAEPHTWRILFALGIIPIALALWLRRALPEAADFVKMREEEAARAAVGETVKKTDMFTMLFARNPKRSIINIVLALTTFGCLIVIYLFKSGVPGLVLALLWVVVAAVMVSFMVQFEGPRWPTGVAVMITVFVAFLYSWPLQALLPTYYRQTLGLASDTASNLVTATSFGAAAGCIMAGFIGDRFGTRKAYWVSLLISEFLVLPVFLVSRGMVHSSVIWVVLLGVFIFVQQMFGQGISGLLPKFISNYFPVEKRAAGLGFSYNVGALGGAIAPVLGIALAGDPATGVGGVLPSSWGLGWTLFILSFVFTAVIIVLIAINFPLRMQKLLRPDHVRPADRMDHVDEELAVSRNPDTIVAS high_GC_Gram+ Propionibacterium_acnes_HL025PA1 Propionibacterium_acnes_HL025PA1 ADYQ01000006 165599..167203 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1605 Propionibacterium_acnes_HL025PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL025PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_65.4xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL025PA1_P_acnesHL025PA1-1.0_Cont1.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4CQK9_PROAC.gb Propionicibacterium 302035043 Submitted_(13-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYQ01000006 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1605 NA genomic_DNA NA HL025PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765089 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYQ01000006.1 ATGAGCAACGTCGAGGCCATAGCAGCCAGGAAATCATGGCGTGACGAGTTGACTGGCACGCAGTGGAAATCCTTCTGGGCAGCATGGATCGGTTATCTGCTGGACGGATTCGACTTCGTCATGATCACGCTGGTCCTCACCGAGATCGGCAGGACCTTTCACGTCGGACCAGCGGCGACTGCGACCCTGGTGTCCGCTGCTTTTATTGCGCGATGGTTCGGCGGACTGCTGCTGGGAGCTATCGGTGACCGGATCGGCCGCAAGGAGGCTATGGTCATCTCAATTCTGCTTTATGCGGGTGGATCGGTCGTCTGTGCCATTGCCCCGGCTTTCTGGGTTATCTTCGTCGCCCGTGTCTGCATCGGCATGGGTATGGCCGGTGAGTACGGCTCTTCAGCCACCTACGTCATTGAGTCCTGGCCAGCGCGTCTGCGGAATAAGGCCTCCGGGTTCCTTATTTCCGGATTTTCCCTTGGCGCCGGTGTGACGGCTCAGGTGTATGCCCTCATCGAGTACCTTACCCGTGGTACCTCCGCTGAGCCTCATACCTGGCGAATACTCTTCGCGCTTGGCATTATTCCGATCGCCTTGGCCCTGTGGCTGCGTCGTGCCCTTCCTGAGGCCGCCGACTTTGTAAAAATGCGCGAGGAGGAGGCCGCTCGCGCCGCTGTCGGCGAGACTGTCAAGAAGACTGACATGTTCACCATGCTCTTCGCACGTAACCCGAAGCGAAGCATCATTAACATTGTTCTGGCCCTCACAACTTTCGGATGCCTAATCGTCATTTACCTGTTCAAGAGCGGCGTCCCGGGGCTCGTGTTGGCATTGCTGTGGGTCGTTGTCGCGGCCGTCATGGTGAGCTTCATGGTCCAGTTCGAGGGACCGCGTTGGCCGACAGGTGTGGCCGTTATGATCACGGTGTTTGTCGCCTTCCTCTACTCCTGGCCTTTGCAGGCTCTGTTGCCTACCTACTATCGCCAAACCCTGGGCCTGGCGAGCGACACCGCTTCCAATCTCGTGACCGCCACTTCTTTTGGCGCGGCAGCGGGCTGCATCATGGCCGGATTTATCGGTGACAGATTCGGAACCCGCAAGGCCTATTGGGTCTCCCTGCTCATCTCGGAGTTCCTCGTCCTGCCGGTCTTCCTCGTCAGCCGAGGCATGGTGCATTCCTCGGTGATATGGGTCGTGCTTCTTGGAGTTTTCATCTTTGTCCAGCAGATGTTCGGACAAGGTATCTCTGGTCTGCTACCGAAGTTCATTTCGAACTACTTTCCGGTCGAGAAGCGCGCTGCTGGTTTGGGTTTCTCTTATAACGTCGGAGCTCTTGGTGGGGCTATCGCCCCGGTCCTCGGCATTGCCCTGGCAGGTGATCCAGCTACCGGTGTTGGCGGTGTGCTGCCCTCCAGCTGGGGCCTCGGATGGACCCTGTTCATCTTGTCCTTCGTATTCACCGCGGTGATCATCGTTCTTATCGCCATCAATTTCCCGCTCCGGATGCAGAAGCTGTTGCGCCCCGACCACGTGCGTCCCGCTGACCGGATGGATCACGTCGATGAAGAGCTTGCTGTTTCCCGGAACCCTGACACTATCGTCGCCTCGTGA > 864 HMPREF9612_01519 KEGG:_dfe:Dfer_2102_3.3e-41_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS66117.1 11 MAANIPLTNTASLTPDTQLASAPISPESRRFLRHVTAATAFGGGLDGFDLGVISVVILHINHDLELTPAMEGLVGAASLLGIFIGAPLFGFLTDKFGRRRMFLVDIIAFIVIGVGQAFATGGVSLGILRFLLGMAIGAEYSIGAPMLSEFVPARERGSKLAFLELCWRIGFLIAVLLGYALLWSGVSWKVILATSVIPALIVLGLRIGLPESPRWLLRHGREAEAREIVEKHMGPKYFAAEQLSDESVDGKGYRKLFRKGQRRRTIFVCIFWTCIVTPYFAIFTYAPKVLESLNVKSQAGGTILSNTIGVVGAVVGLLAIDRIGRRRMLIGPFWMQTAVLLIVGLWTDAPPWVLVVGLALFALVNSYSDILTAVYPSEIFDTDIRSSGVGFGSAVSRIGAFLGTYLLPIGIGTIGVKWCMVIAAGLCVVGAVTGQTLAPETMNRPLTKTATGELSHA high_GC_Gram+ Propionibacterium_acnes_HL063PA2 Propionibacterium_acnes_HL063PA2 ADYS01000028 41946..43319 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1374 Propionibacterium_acnes_HL063PA2_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL063PA2_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_67.5xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL063PA2_P_acnesHL063PA2-1.0_Cont637.2,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4CZE8_PROAC.gb Propionicibacterium 302034916 Submitted_(13-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYS01000028 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1374 NA genomic_DNA NA HL063PA2 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765114 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYS01000028.1 TCAGGCATGTGACAACTCTCCGGTTGCCGTTTTCGTCAGGGGCCGGTTCATGGTCTCAGGTGCCAGCGTCTGGCCGGTCACAGCGCCAACGACGCATAGACCTGCCGCGATGACCATGCACCACTTGACCCCGATTGTCCCGATGCCAATGGGCAGCAGGTAGGTGCCAAGGAAGGCACCAATGCGGCTGACTGCCGACCCGAACCCTACGCCACTGGATCGAATGTCGGTGTCGAAGATTTCAGAAGGGTACACCGCAGTAAGAATGTCGCTGTAGGAGTTGACCAAGGCGAAAAGAGCCAAGCCCACCACCAGCACCCACGGCGGCGCGTCGGTCCACAGCCCGACAATCAACAAGACTGCGGTCTGCATCCAGAACGGCCCGATGAGCATACGTCGGCGGCCGATGCGATCGATCGCCAGCAGACCGACGACCGCGCCAACGACGCCAATGGTATTGGAGAGGATCGTGCCGCCGGCTTGAGACTTCACGTTGAGGGATTCCAGCACTTTCGGAGCGTAGGTGAAGATCGCGAAATACGGGGTGACGATGCACGTCCAGAAAATACAGACGAAGATCGTGCGCCGCCGTTGACCCTTGCGGAACAGCTTGCGGTAGCCTTTCCCGTCCACCGACTCGTCGCTGAGCTGTTCGGCGGCGAAGTATTTCGGACCCATGTGCTTTTCGACGATCTCACGTGCTTCGGCCTCACGGCCGTGACGCAGCAACCAGCGCGGGGATTCTGGAAGACCGATTCGCAGCCCGAGCACAATGAGGGCTGGGATTACTGAAGTGGCCAAGATGACTTTCCACGACACTCCAGACCACAGCAGCGCATACCCCAATAGGACAGCGATAAGGAAGCCGATGCGCCAGCATAGTTCGAGGAAGGCCAGCTTCGATCCACGCTCCCGGGCCGGAACAAACTCTGAAAGCATCGGTGCTCCGATCGAGTATTCGGCTCCGATGGCCATCCCTAAAAGGAATCTGAGGATCCCTAGGGAGACTCCACCCGTCGCGAAAGCCTGCCCGACGCCGATAACGATGAAAGCAATAATGTCGACGAGGAACATCCTGCGGCGTCCGAACTTATCGGTGAGGAAGCCGAAGAGTGGGGCACCAATGAAGATGCCCAGTAGGCTCGCGGCACCGACGAGCCCCTCCATAGCGGGGGTGAGCTCGAGGTCGTGATTGATGTGCAAGATGACCACGCTAATGACGCCCAGGTCGAAGCCGTCGAGCCCGCCACCGAAAGCGGTGGCGGCTGTGACATGGCGCAGGAAACGTCTGGATTCGGGGGAGATTGGTGCTGACGCCAATTGCGTGTCGGGCGTCAAACTGGCGGTGTTCGTAAGCGGGATGTTGGCGGCCAT > 865 HMPREF9605_00871 KEGG:_cai:Caci_8679_8.1e-26_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS61713.1 11 MFLTIWWSVWVYPAHAIPTWRRTAVSDAQATERTITSLIPARIDRLPWSTFHTMVIVGLGTAWILDGIEVQIVAANGFAKPLHMSTTEVTAAATFYLLGQVLGALFFGKLTDRIGRKKLFTLTLLVYLLGSGIAGLSFSTWFLYVCRFIAGSGIGGEYSAINSAIDELIPAQYRGRVDLSVNGTYWAGVMLGSVATIYLLDPTKVAEFWGWRIGFFIGPVLGIVVILIRKHIPESPRWMLTHGYGEQAEEIVAGIEQDVRESGHELEPVSDDQAITLEPEVRRQGRRNFSQRWVEFKESGAELVEVFLRRYWKRTVLGVTLMVTQSFLYNAIFFTYEIVLSQFYSVSKSDVGLYMIPFAVGNLLGPILLGRFFDTVGRRKMIFATYGIAALVLAISAILFQRDALTPTTHTIFWCVAFFFASAGASSAYLTVSEIFPLEVRGQAISYFFSIAQIAGAIAPFIFGNLIGDGSSRGPLVGGYFIGAGIMLTGGLVALFMGVDAEGKGLEAITDPLSRDRAKKSAARQAE high_GC_Gram+ Propionibacterium_acnes_HL036PA2 Propionibacterium_acnes_HL036PA2 ADYU01000005 92226..93809 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1584 Propionibacterium_acnes_HL036PA2_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL036PA2_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_69.3xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL036PA2_P_acnesHL036PA2-1.0_Cont1.2,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4D524_PROAC.gb Propionicibacterium 302034852 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYU01000005 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1584 NA genomic_DNA NA HL036PA2 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765107 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYU01000005.1 ATGTTTCTCACTATTTGGTGGAGTGTGTGGGTATACCCTGCTCACGCCATCCCCACATGGAGGAGGACCGCTGTGTCAGACGCCCAAGCCACTGAGCGAACGATCACATCACTGATACCGGCCCGTATCGACCGGCTGCCGTGGTCGACATTTCACACCATGGTTATCGTCGGTCTAGGAACAGCGTGGATCCTCGACGGTATTGAGGTGCAGATCGTCGCAGCAAATGGCTTTGCAAAACCGCTGCACATGTCCACCACCGAGGTTACCGCGGCAGCAACCTTCTACCTGCTTGGCCAAGTACTTGGTGCTCTCTTCTTCGGCAAACTTACCGACCGTATTGGTCGAAAGAAACTCTTCACTCTGACTCTCCTGGTTTACCTTCTTGGTTCGGGTATTGCAGGTTTGTCCTTCTCGACGTGGTTCCTCTATGTGTGCCGGTTTATTGCTGGATCTGGTATTGGTGGTGAATATTCAGCGATCAACTCGGCCATCGATGAGCTCATTCCAGCCCAGTATCGCGGTCGGGTGGACTTGTCTGTCAATGGCACCTACTGGGCTGGCGTCATGCTCGGTTCGGTCGCCACTATTTACCTCCTTGACCCGACGAAGGTCGCGGAGTTTTGGGGCTGGCGTATTGGCTTCTTTATTGGTCCGGTTCTCGGCATTGTTGTCATCCTTATTCGTAAGCACATTCCGGAGTCGCCTCGGTGGATGCTAACGCACGGTTACGGTGAGCAGGCCGAAGAGATCGTTGCCGGGATCGAGCAGGATGTTCGGGAGTCGGGGCATGAACTTGAGCCGGTTAGCGACGACCAGGCCATCACCTTGGAACCCGAGGTGAGGCGTCAAGGTCGCCGCAACTTCTCCCAGCGTTGGGTAGAGTTTAAGGAGTCTGGTGCTGAGCTGGTCGAGGTGTTCCTGCGTCGCTATTGGAAGCGCACTGTGCTGGGTGTCACCCTTATGGTGACCCAGTCCTTCCTGTACAACGCCATCTTTTTCACCTATGAGATCGTGCTGTCGCAGTTCTATTCAGTGTCTAAATCTGACGTCGGCTTATATATGATCCCATTCGCGGTCGGAAACCTACTCGGCCCAATTCTACTGGGACGATTCTTCGACACTGTTGGTCGACGTAAGATGATTTTCGCCACCTACGGAATAGCTGCTCTAGTGCTGGCTATCAGTGCGATACTGTTCCAGCGTGACGCCCTGACGCCGACCACCCACACTATCTTCTGGTGCGTCGCTTTCTTTTTTGCTAGTGCCGGAGCTTCCTCGGCCTATCTGACAGTGTCTGAGATTTTCCCGCTGGAAGTTCGTGGCCAGGCTATTAGCTACTTTTTCTCGATCGCCCAGATTGCCGGTGCTATCGCTCCATTCATCTTCGGTAACCTCATCGGTGACGGTTCCTCGCGCGGCCCCCTTGTCGGCGGTTACTTCATCGGTGCCGGCATCATGCTTACCGGTGGTCTCGTCGCTTTGTTCATGGGCGTTGACGCCGAGGGCAAGGGTCTGGAGGCCATCACTGATCCGCTCAGCCGTGACCGTGCCAAGAAGTCCGCCGCCCGTCAAGCGGAGTGA > 866 HMPREF9593_00886 KEGG:_bid:Bind_0105_6.8e-14_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS56736.1 11 MASSDDIITIKEMGDKRRWWQYLDATKWKLFIAALIGVTLDGYDFVLITLALPEIKAAFGLTLVQSAALVSAAFITRWLGGLILGGVGDRFGRKPAMIIATVLFAIGSLLMGFSPNFMFLFIMRMVVGFAMAGEYGSSATYVIESWHPRIRGKASSFLLSGYAIGAILAVQVDKYLVPWADSWHAGWGWRALFITGIVPIAVALYMRRRLPEASDWETAKSREREKSSESRDAFQVLFSGRRMSLNITLVIAAMAGLLAIFALNILPFWGVLAVAIACGAIFVCLIVQFDPRRWVIGIGIMIVILSAFMYGWPILGLLPTYLTGAGYAASTVANLLTIAQFGNMIGYFVTGFMGDWIGMRKWYFTSILIAQIIVFPLFFAGIKSAWLIGLLLFFNQLFGQGVSGLAPRWVSSYFPVEQRAAGVGFIYNVGALGGAIGPFVGASLAKSHGLGSALGVLSVGFGLIVVLGVRLNLPRKLQALVNPEAVRPEDGDDRYINSVDLSSEFASSEC high_GC_Gram+ Propionibacterium_acnes_HL046PA2 Propionibacterium_acnes_HL046PA2 ADYV01000047 142828..144360 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1533 Propionibacterium_acnes_HL046PA2_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL046PA2_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_68.8xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL046PA2_P_acnesHL046PA2-1.0_Cont245.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4DC88_PROAC.gb Propionicibacterium 302035265 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYV01000047 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1533 NA genomic_DNA NA HL046PA2 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765095 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYV01000047.1 TTAGCACTCGCTGGATGCAAACTCGCTCGAAAGGTCGACGCTGTTGATGTACCGGTCATCTCCGTCCTCGGGCCGGACGGCCTCTGGGTTGACGAGAGCCTGTAGCTTGCGTGGCAGATTCAGCCTAACGCCAAGGACAACAATCAGGCCGAAGCCCACGGACAACACCCCTAGAGCCGATCCCAGACCGTGGCTCTTAGCCAGCGAGGCGCCCACAAATGGTCCAATTGCACCGCCGAGAGCTCCGACATTGTAGATGAACCCCACTCCGGCAGCTCGCTGCTCGACGGGGAAATAGCTCGACACCCACCGAGGGGCTAGCCCTGAAACACCTTGGCCGAACAACTGGTTGAAGAACAGTAGAAGCCCAATGAGCCATGCCGACTTAATTCCCGCAAAGAATAGCGGAAACACGATGATCTGCGCTATGAGAATGCTCGTGAAGTACCACTTTCGCATTCCTATCCAGTCTCCCATGAAGCCTGTGACAAAGTAACCAATCATGTTGCCGAATTGTGCGATCGTTAGCAGATTGGCGACGGTGGAAGCTGCATATCCTGCACCCGTGAGGTATGTAGGCAAGAGTCCAAGGATGGGCCATCCATACATGAAGGCAGAAAGGATAACGATCATGATTCCGATGCCGATGACCCAGCGTCGAGGATCAAATTGCACGATGAGACACACGAAGATGGCGCCACAGGCTATGGCCACGGCGAGGACGCCCCAGAAAGGCAGGATGTTGAGGGCGAAGATGGCTAGTAGACCTGCCATTGCCGCGATGACGAGTGTGATGTTTAGTGACATGCGCCTTCCGCTGAACAGCACCTGGAAAGCGTCACGTGATTCGGACGATTTTTCCCGCTCGCGTGACTTTGCCGTTTCCCAGTCGCTAGCTTCGGGGAGGCGACGTCGCATGTACAGTGCCACTGCGATGGGCACGATTCCGGTGATGAACAGGGCTCTCCAACCCCATCCGGCATGCCAACTGTCGGCCCATGGGACTAAGTACTTGTCGACCTGGACGGCCAGGATGGCGCCTATCGCATAGCCTGACAACAGAAATGACGATGCCTTGCCGCGGATTCGGGGGTGCCACGATTCGATGACATATGTTGCCGATGACCCGTACTCTCCCGCCATCGCGAAGCCGACGACCATGCGCATAATGAACAGGAACATGAAGTTCGGCGAAAATCCCATGAGGAGCGAGCCGATCGCGAACAATACGGTTGCGATGATCATGGCTGGCTTGCGTCCGAACCTGTCGCCAACACCGCCCAGGATTAGTCCGCCCAGCCACCGTGTGATGAAGGCTGCTGACACCAACGCTGCGCTTTGTACCAGGGTGAGGCCAAAGGCCGCCTTGATCTCTGGCAGTGCCAAGGTGATGAGCACGAAGTCGTAGCCGTCAAGGGTGACACCAATAAGGGCTGCAATGAAGAGCTTCCACTTGGTGGCGTCTAAGTACTGCCACCATCGTCTCTTGTCACCCATCTCCTTGATGGTGATGATGTCGTCTGAGCTGGCCAT > 867 HMPREF9589_00252 KEGG:_gdj:Gdia_1773_2.6e-15_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS54746.1 11 MSNVEAIAARKSWRDELTGTQWKSFWAAWIGYLLDGFDFVMITLVLTEIGRTFHVGPAATATLVSAAFIARWFGGLLLGAIGDRIGRKEAMVISILLYAGGSVVCAIAPAFWVIFVARVCIGMGMAGEYGSSATYVIESWPVRLRNKASGFLISGFSLGAGVTAQVYALIEYLTRGTSAEPHTWRILFALGIIPIALALWLRRALPEAADFVKMREEEAARAAVGETVKKTDMFTMLFARNPKRSIINIVLALTTFGCLIVIYLFKSGVPGLVLALLWVVVAAVMVSFMVQFEGPRWPTGVAVMITVFVAFLYSWPLQALLPTYYRQTLGLASDTASNLVTATSFGAAAGCIMAGFIGDRFGTRKAYWVSLLISEFLVLPVFLVSRGMVHSSVIWVVLLGVFIFVQQMFGQGISGLLPKFISNYFPVEKRAAGLGFSYNVGALGGAIAPVLGIALAGDPATGVGGVLPSSWGLGWTLFILSFVFTAVIIVLIAINFPLRMQKLLRPDHVRPADRMDHVDEELAVSRNPDTIVAS high_GC_Gram+ Propionibacterium_acnes_HL059PA1 Propionibacterium_acnes_HL059PA1 ADYW01000002 127983..129587 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1605 Propionibacterium_acnes_HL059PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL059PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_69.2xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL059PA1_P_acnesHL059PA1-1.0_Cont7.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4DHU9_PROAC.gb Propionicibacterium 302035229 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYW01000002 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1605 NA genomic_DNA NA HL059PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765091 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYW01000002.1 ATGAGCAACGTCGAGGCCATAGCAGCCAGGAAATCATGGCGTGACGAGTTGACTGGCACGCAGTGGAAATCCTTCTGGGCAGCATGGATCGGTTATCTGCTGGACGGATTCGACTTCGTCATGATCACGCTGGTCCTCACCGAGATCGGCAGGACCTTTCACGTCGGACCAGCGGCGACTGCGACCCTGGTGTCCGCTGCTTTTATTGCGCGATGGTTCGGCGGACTGCTGCTGGGAGCTATCGGTGACCGGATCGGCCGCAAGGAGGCTATGGTCATCTCAATTCTGCTTTATGCGGGTGGATCGGTCGTCTGTGCCATTGCCCCGGCTTTCTGGGTTATCTTCGTCGCCCGTGTCTGCATCGGCATGGGTATGGCCGGTGAGTACGGCTCTTCAGCCACCTACGTCATTGAGTCCTGGCCAGTGCGTCTGCGGAATAAGGCCTCCGGGTTCCTTATTTCCGGATTTTCCCTTGGCGCCGGTGTGACGGCTCAGGTGTATGCCCTCATCGAGTACCTTACCCGTGGTACCTCCGCTGAGCCTCATACCTGGCGAATACTCTTCGCGCTTGGCATTATTCCGATCGCCTTGGCCCTGTGGCTGCGTCGTGCCCTTCCTGAGGCCGCCGACTTTGTAAAAATGCGCGAGGAGGAGGCCGCTCGCGCCGCTGTCGGCGAGACTGTCAAGAAGACTGACATGTTCACCATGCTCTTCGCACGTAACCCGAAGCGAAGCATCATTAACATTGTTCTGGCCCTCACAACTTTCGGATGCCTAATCGTCATTTACCTGTTCAAGAGCGGCGTCCCGGGGCTCGTGTTGGCATTGCTGTGGGTCGTTGTCGCGGCCGTCATGGTGAGCTTCATGGTCCAGTTCGAGGGACCGCGTTGGCCGACAGGTGTGGCCGTTATGATCACGGTGTTTGTCGCCTTCCTCTACTCCTGGCCTTTGCAGGCTCTGTTGCCTACCTACTATCGCCAAACCCTGGGCCTGGCGAGCGACACCGCTTCCAATCTCGTGACCGCCACTTCTTTTGGCGCGGCAGCGGGCTGCATCATGGCCGGATTTATCGGTGACAGATTCGGAACCCGCAAGGCCTATTGGGTCTCCCTGCTCATCTCGGAGTTCCTCGTCCTGCCGGTCTTCCTCGTCAGCCGAGGCATGGTGCATTCCTCGGTGATATGGGTCGTGCTTCTTGGAGTTTTCATCTTTGTCCAGCAGATGTTCGGACAAGGTATCTCTGGTCTGCTACCGAAGTTCATTTCGAACTACTTTCCGGTCGAGAAGCGCGCTGCTGGTTTGGGTTTCTCTTATAACGTCGGAGCTCTTGGTGGGGCTATCGCCCCGGTCCTCGGCATTGCCCTGGCAGGTGATCCAGCTACCGGTGTTGGCGGTGTGCTGCCCTCCAGCTGGGGCCTCGGATGGACCCTGTTCATCTTGTCCTTCGTATTCACCGCGGTGATCATCGTTCTTATCGCCATCAATTTCCCGCTCCGGATGCAGAAGCTGTTGCGCCCCGACCACGTGCGTCCCGCTGACCGGATGGATCACGTCGATGAAGAGCTTGCTGTTTCCCGGAACCCTGACACTATCGTCGCCTCGTGA > 868 HMPREF9589_02402 KEGG:_bid:Bind_0105_3.6e-13_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS52557.1 11 MASSDDIITIKEMGDKRRWWQYLDATKWKLFIAALIGVTLDGYDFVLITLALPEIKAAFGLTLVQSAALVSAAFITRWLGGLILGGVGDRFGRKPAMIIATVLFAIGSLLMGFSPNFMFLFIMRMVVGFAMAGEYGSSATYVIESWHPRIRGKASSFLLSGYAIGAILAVQVDKYLVPWVDSWHAGWGWRALFITGIVPIAVALYMRRRLPEASDWETAKSREREKSSESRDAFQVLFSGRRMSLNITLVIAAMAGLLAIFALNILPFWGVLAVAIACGAIFVCLIVQFDPRRWVIGIGIMIVILSAFMYGWPILGLLPTYLTGAGYAASTVANLLTIAQFGNMIGYFVTGFMGDWIGMLKWYFTSILIAQIIVFPLFFAGIKSAWLIGLLLFFNQLFGQGVSGLAPRWVSSYFPVEQRAAGVGFIYNVGALGGAIGPFVGASLAKSHGLGSALGVLSVGFGLIVVLGVGLNLPRKLQALVNPEAVRPEDGDDRYINSGDLSSEFASSEC high_GC_Gram+ Propionibacterium_acnes_HL059PA1 Propionibacterium_acnes_HL059PA1 ADYW01000031 51115..52647 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1533 Propionibacterium_acnes_HL059PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL059PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_69.2xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL059PA1_P_acnesHL059PA1-1.0_Cont474.2,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4DNX7_PROAC.gb Propionicibacterium 302035200 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYW01000031 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1533 NA genomic_DNA NA HL059PA1 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765091 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYW01000031.1 TTAGCACTCGCTGGATGCAAACTCGCTCGAAAGGTCGCCGCTGTTGATGTACCGGTCATCTCCGTCCTCGGGTCGGACGGCCTCTGGGTTGACGAGAGCCTGTAGCTTGCGTGGCAGATTCAGCCCAACGCCAAGGACAACAATCAGGCCGAAGCCCACGGACAACACCCCTAGAGCCGATCCCAGACCGTGGCTCTTAGCCAGCGAGGCGCCCACAAATGGTCCAATTGCACCGCCGAGAGCTCCGACATTGTAGATGAACCCCACTCCGGCAGCTCGCTGCTCGACGGGGAAATAGCTCGACACCCACCGAGGGGCTAGCCCTGAAACACCTTGGCCGAACAACTGGTTGAAGAACAGTAGAAGCCCAATGAGCCATGCCGACTTAATTCCCGCAAAGAATAGCGGAAACACGATGATCTGCGCTATGAGAATGCTCGTGAAGTACCACTTTAGCATTCCTATCCAGTCTCCCATGAAGCCTGTGACAAAGTAACCAATCATGTTGCCGAATTGTGCGATCGTTAGCAGATTGGCGACGGTGGAAGCTGCATATCCTGCACCCGTGAGGTATGTAGGCAAGAGTCCAAGGATGGGCCATCCATACATGAAGGCAGAAAGGATAACGATCATGATTCCGATGCCGATGACCCAGCGTCGAGGATCAAATTGCACGATGAGACACACGAAGATGGCGCCACAGGCTATGGCCACGGCGAGGACGCCCCAGAAAGGCAGGATGTTGAGGGCGAAGATGGCTAGTAGACCTGCCATTGCCGCGATGACGAGTGTGATGTTTAGTGACATGCGCCTTCCGCTGAACAGCACCTGGAAAGCGTCACGTGATTCGGACGATTTTTCCCGCTCGCGTGACTTTGCCGTTTCCCAGTCGCTAGCTTCGGGGAGGCGACGTCGCATGTACAGTGCCACTGCGATGGGCACGATTCCGGTGATGAACAGGGCTCTCCAACCCCATCCGGCATGCCAACTGTCGACCCATGGGACTAAGTACTTGTCGACCTGGACGGCCAGGATGGCGCCTATCGCATAGCCTGACAATAGAAATGACGATGCCTTGCCGCGGATTCGGGGGTGCCACGATTCGATGACATATGTTGCCGATGACCCGTACTCTCCCGCCATCGCGAAGCCGACGACCATGCGCATAATGAACAGGAACATGAAGTTCGGCGAAAATCCCATGAGGAGCGAGCCGATCGCGAACAATACGGTTGCGATGATCATGGCTGGCTTGCGTCCGAACCTGTCGCCAACACCGCCCAGGATTAGTCCGCCCAGCCACCGTGTGATGAAGGCTGCTGACACCAACGCTGCGCTTTGTACCAGGGTGAGGCCAAAGGCCGCCTTGATCTCTGGCAGTGCCAAGGTGATGAGCACGAAGTCGTAGCCGTCAAGGGTGACACCAATAAGGGCTGCAATGAAGAGCTTCCATTTGGTGGCGTCTAAGTACTGCCACCATCGTCTCTTGTCACCCATCTCCTTGATGGTGATGATGTCGTCTGAGCTGGCCAT > 869 HMPREF9576_00600 KEGG:_gdj:Gdia_1773_2.6e-15_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS44324.1 11 MSNVEAIAARKSWRDELTGTQWKSFWAAWIGYLLDGFDFVMITLVLTEIGRTFHVGPAATATLVSAAFIARWFGGLLLGAIGDRIGRKEAMVISILLYAGGSVVCAIAPAFWVIFVARVCIGMGMAGEYGSSATYVIESWPVRLRNKASGFLISGFSLGAGVTAQVYALIEYLTRGTSAEPHTWRILFALGIIPIALALWLRRALPEAADFVKMREEEAARAAVGETVKKTDMFTMLFARNPKRSIINIVLALTTFGCLIVIYLFKSGVPGLVLALLWVVVAAVMVSFMVQFEGPRWPTGVAVMITVFVAFLYSWPLQALLPTYYRQTLGLASDTASNLVTATSFGAAAGCIMAGFIGDRFGTRKAYWVSLLISEFLVLPVFLVSRGMVHSSVIWVVLLGVFIFVQQMFGQGISGLLPKFISNYFPVEKRAAGLGFSYNVGALGGAIAPVLGIALAGDPATGVGGVLPSSWGLGWTLFILSFVFTAVIIVLIAINFPLRMQKLLRPDHVRPADRMDHVDEELAVSRNPDTIVAS high_GC_Gram+ Propionibacterium_acnes_HL110PA2 Propionibacterium_acnes_HL110PA2 ADYY01000003 127848..129452 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1605 Propionibacterium_acnes_HL110PA2_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL110PA2_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_69.4xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL110PA2_P_acnesHL110PA2-1.0_Cont1.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4DY89_PROAC.gb Propionicibacterium 302035077 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYY01000003 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1605 NA genomic_DNA NA HL110PA2 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765078 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYY01000003.1 ATGAGCAACGTCGAGGCCATAGCAGCCAGGAAATCATGGCGTGACGAGTTGACTGGCACGCAGTGGAAATCCTTCTGGGCAGCATGGATCGGTTATCTGCTGGACGGATTCGACTTCGTCATGATCACGCTGGTCCTCACCGAGATCGGCAGGACCTTTCACGTCGGACCAGCGGCGACTGCGACCCTGGTGTCCGCTGCTTTTATTGCGCGATGGTTCGGCGGACTGCTGCTGGGAGCTATCGGTGACCGGATCGGCCGCAAGGAGGCTATGGTCATCTCAATTCTGCTTTATGCGGGTGGATCGGTCGTCTGTGCCATTGCCCCGGCTTTCTGGGTTATCTTCGTCGCCCGTGTCTGCATCGGCATGGGTATGGCCGGTGAGTACGGCTCTTCAGCCACCTACGTCATTGAGTCCTGGCCAGTGCGTCTGCGGAATAAGGCCTCCGGGTTCCTTATTTCCGGATTTTCCCTTGGCGCCGGTGTGACGGCTCAGGTGTATGCCCTCATCGAGTACCTTACCCGTGGTACCTCCGCTGAGCCTCATACCTGGCGAATACTCTTCGCGCTTGGCATTATTCCGATCGCCTTGGCCCTGTGGCTGCGTCGTGCCCTTCCTGAGGCCGCCGACTTTGTAAAAATGCGCGAGGAGGAGGCCGCTCGCGCCGCTGTCGGCGAGACTGTCAAGAAGACTGACATGTTCACCATGCTCTTCGCACGTAACCCGAAGCGAAGCATCATTAACATTGTTCTGGCCCTCACAACTTTCGGATGCCTAATCGTCATTTACCTGTTCAAGAGCGGCGTCCCGGGGCTCGTGTTGGCATTGCTGTGGGTCGTTGTCGCGGCCGTCATGGTGAGCTTCATGGTCCAGTTCGAGGGACCGCGTTGGCCGACAGGTGTGGCCGTTATGATCACGGTGTTTGTCGCCTTCCTCTACTCCTGGCCTTTGCAGGCTCTGTTGCCTACCTACTATCGCCAAACCCTGGGCCTGGCGAGCGACACCGCTTCCAATCTCGTGACCGCCACTTCTTTTGGCGCGGCAGCGGGCTGCATCATGGCCGGATTTATCGGTGACAGATTCGGAACCCGCAAGGCCTATTGGGTCTCCCTGCTCATCTCGGAGTTCCTCGTCCTGCCGGTCTTCCTCGTCAGCCGAGGCATGGTGCATTCCTCGGTGATATGGGTCGTGCTTCTTGGAGTTTTCATCTTTGTCCAGCAGATGTTCGGACAAGGTATCTCTGGTCTGCTACCGAAGTTCATTTCGAACTACTTTCCGGTCGAGAAGCGCGCTGCTGGTTTGGGTTTCTCTTATAACGTCGGAGCTCTTGGTGGGGCTATCGCCCCGGTCCTCGGCATTGCCCTGGCAGGTGATCCAGCTACCGGTGTTGGCGGTGTGCTGCCCTCCAGCTGGGGCCTCGGATGGACCCTGTTCATCTTGTCCTTCGTATTCACCGCGGTGATCATCGTTCTTATCGCCATCAATTTCCCGCTCCGGATGCAGAAGCTGTTGCGCCCCGACCACGTGCGTCCCGCTGACCGGATGGATCACGTCGATGAAGAGCTTGCTGTTTCCCGGAACCCTGACACTATCGTCGCCTCGTGA > 870 HMPREF9574_01045 KEGG:_ach:Achl_0944_3.6e-76_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_sugar_porter_family_protein EFS38576.1 11 MSVTSRIEVAELVETTQPAGPKRRMGVVAAVATLGSLLFGYDTGVISGALPFMYLPHGAGGLALTVGHEGAIGGTLTLGAAFGGLIGGMMSDRWGRRHNLLILAVLFVVGALGTAGAPSVWVMYPFRVVLGFAVGAASATVPVYLSETSPKRMRGRIVALDQFMIVFGQLLAFSVNAAISAAHGGPSLMVTADPTGRLSPGTYSWDTLQAMTTSHGGAMTDQAFHAFLTQLSVSAGSGGAWRWMLVVCTLPAIALWIGMRKMPESARWHLSHGQLRETVACLKQVRVEGVDEPIVDEVTEMVELNGEGGRLSHRQQWAVVMESRWTRRLLLVGIFLAVVNQTTGVNTVMYYAPKVLEFAGMSTQASIISQVANGVMSVIGAAAGLWLIERFDRRHLLIFDVTAVGVCLLGIAATFGLAIAPHVGQGVPKWAPILVLVLMSIFMLIVQSTNGTVVWTMLGEMFPTRMRGAMNGAAVFCGWLANATITWTFPAMLAGLGGAGTYLTYGLVNLMIALVLVKVMPETKGRSLEEIEVEMKQRYA high_GC_Gram+ Propionibacterium_acnes_HL074PA1 Propionibacterium_acnes_HL074PA1 ADYZ01000042 42151..43773 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1623 Propionibacterium_acnes_HL074PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL074PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_67.9xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL074PA1_P_acnesHL074PA1-1.0_Cont245.2,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4E6T4_PROAC.gb Propionicibacterium 302035148 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYZ01000042 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1623 NA genomic_DNA NA HL074PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765076 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYZ01000042.1 TTGTCCGTGACATCGAGAATCGAGGTGGCCGAGCTCGTTGAGACAACGCAGCCGGCTGGCCCGAAGCGCCGTATGGGTGTAGTGGCCGCAGTCGCTACCCTGGGTTCACTTCTTTTCGGCTACGACACCGGAGTCATTTCTGGCGCCTTGCCGTTCATGTATCTGCCTCATGGCGCTGGCGGTCTGGCCCTGACGGTGGGACATGAAGGTGCCATCGGTGGCACCTTAACCCTTGGCGCTGCTTTCGGCGGCCTTATAGGCGGGATGATGAGCGACCGCTGGGGTCGGCGTCATAACCTCCTGATTTTGGCTGTCCTCTTTGTTGTGGGAGCTTTGGGAACTGCCGGTGCCCCCAGCGTGTGGGTGATGTACCCCTTCCGAGTGGTGCTCGGATTCGCCGTGGGAGCGGCCTCAGCAACAGTGCCAGTCTACTTGTCGGAGACCTCACCCAAACGGATGCGTGGGCGGATCGTGGCGCTTGACCAATTTATGATCGTCTTTGGTCAGCTGCTGGCTTTCTCCGTCAATGCCGCCATCTCAGCGGCTCATGGGGGACCCAGTTTGATGGTGACTGCGGATCCGACGGGACGACTGTCTCCGGGAACTTATTCCTGGGACACTTTGCAGGCCATGACGACCTCCCACGGGGGAGCGATGACCGACCAGGCTTTTCATGCCTTCCTTACTCAGCTGTCGGTATCAGCCGGGTCCGGTGGAGCATGGCGCTGGATGCTCGTGGTATGCACTCTGCCCGCCATCGCGCTGTGGATCGGTATGAGGAAGATGCCCGAGTCGGCTCGTTGGCATCTAAGCCATGGTCAGCTTCGGGAGACCGTCGCATGCCTCAAACAGGTGCGCGTCGAAGGGGTTGATGAACCCATCGTCGATGAGGTCACTGAGATGGTTGAACTCAACGGCGAGGGCGGCAGGCTCAGTCACCGTCAGCAGTGGGCGGTCGTCATGGAGTCTCGCTGGACGCGTCGCCTCCTGCTGGTCGGGATTTTCCTTGCTGTAGTTAACCAAACCACCGGCGTCAATACCGTCATGTATTACGCGCCCAAGGTGTTGGAGTTCGCAGGAATGAGCACCCAGGCGTCGATTATTTCTCAGGTGGCTAATGGAGTCATGTCTGTTATTGGTGCCGCTGCAGGCTTGTGGCTCATCGAACGGTTTGATCGTCGTCACCTGCTTATCTTCGATGTCACGGCGGTCGGTGTGTGTCTCCTTGGTATTGCGGCTACTTTCGGGCTGGCAATTGCTCCTCATGTGGGTCAAGGGGTACCGAAGTGGGCGCCTATTCTCGTGCTCGTCCTGATGAGTATCTTCATGCTTATCGTGCAGTCCACTAACGGCACAGTGGTGTGGACCATGCTTGGTGAGATGTTCCCGACCCGGATGCGCGGGGCGATGAACGGTGCTGCGGTGTTTTGTGGGTGGCTGGCTAATGCGACGATCACCTGGACCTTCCCGGCCATGCTGGCGGGGCTCGGCGGTGCGGGAACCTACCTGACCTATGGCCTGGTAAACCTCATGATCGCGTTGGTCCTCGTCAAGGTCATGCCGGAGACCAAGGGACGCTCACTGGAGGAGATCGAGGTCGAGATGAAGCAGCGCTACGCCTAA > 871 HMPREF9574_01872 KEGG:_gdj:Gdia_1773_2.6e-15_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS37634.1 11 MSNVEAIAARKSWRDELTGTQWKSFWAAWIGYLLDGFDFVMITLVLTEIGRTFHVGPAATATLVSAAFIARWFGGLLLGAIGDRIGRKEAMVISILLYAGGSVVCAIAPAFWVIFVARVCIGMGMAGEYGSSATYVIESWPVRLRNKASGFLISGFSLGAGVTAQVYALIEYLTRGTSAEPHTWRILFALGIIPIALALWLRRALPEAADFVKMREEEAARAAVGETVKKTDMFTMLFARNPKRSIINIVLALTTFGCLIVIYLFKSGVPGLVLALLWVVVAAVMVSFMVQFEGPRWPTGVAVMITVFVAFLYSWPLQALLPTYYRQTLGLASDTASNLVTATSFGAAAGCIMAGFIGDRFGTRKAYWVSLLISEFLVLPVFLVSRGMVHSSVIWVVLLGVFIFVQQMFGQGISGLLPKFISNYFPVEKRAAGLGFSYNVGALGGAIAPVLGIALAGDPATGVGGVLPSSWGLGWTLFILSFVFTAVIIVLIAINFPLRMQKLLRPDHVRPADRMDHVDEELAVSRNPDTIVAS high_GC_Gram+ Propionibacterium_acnes_HL074PA1 Propionibacterium_acnes_HL074PA1 ADYZ01000059 15959..17563 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1605 Propionibacterium_acnes_HL074PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project.Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL074PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_67.9xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL074PA1_P_acnesHL074PA1-1.0_Cont386.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4E942_PROAC.gb Propionicibacterium 302035131 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYZ01000059 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1605 NA genomic_DNA NA HL074PA1 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765076 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYZ01000059.1 TCACGAGGCGACGATAGTGTCAGGGTTCCGGGAAACAGCAAGCTCTTCATCGACGTGATCCATCCGGTCAGCGGGACGCACGTGGTCGGGGCGCAACAGCTTCTGCATCCGGAGCGGGAAATTGATGGCGATAAGAACGATGATCACCGCGGTGAATACGAAGGACAAGATGAACAGGGTCCATCCGAGGCCCCAGCTGGAGGGCAGCACACCGCCAACACCGGTAGCTGGATCACCTGCCAGGGCAATGCCGAGGACCGGGGCGATAGCCCCACCAAGAGCTCCGACGTTATAAGAGAAACCCAAACCAGCAGCGCGCTTCTCGACCGGAAAGTAGTTCGAAATGAACTTCGGTAGCAGACCAGAGATACCTTGTCCGAACATCTGCTGGACAAAGATGAAAACTCCAAGAAGCACGACCCATATCACCGAGGAATGCACCATGCCTCGGCTGACGAGGAAGACCGGCAGGACGAGGAACTCCGAGATGAGCAGGGAGACCCAATAGGCCTTGCGGGTTCCGAATCTGTCACCGATAAATCCGGCCATGATGCAGCCCGCTGCCGCGCCAAAAGAAGTGGCGGTCACGAGATTGGAAGCGGTGTCGCTCGCCAGGCCCAGGGTTTGGCGATAGTAGGTAGGCAACAGAGCCTGCAAAGGCCAGGAGTAGAGGAAGGCGACAAACACCGTGATCATAACGGCCACACCTGTCGGCCAACGCGGTCCCTCGAACTGGACCATGAAGCTCACCATGACGGCCGCGACAACGACCCACAGCAATGCCAACACGAGCCCCGGGACGCCGCTCTTGAACAGGTAAATGACGATTAGGCATCCGAAAGTTGTGAGGGCCAGAACAATGTTAATGATGCTTCGCTTCGGGTTACGTGCGAAGAGCATGGTGAACATGTCAGTCTTCTTGACAGTCTCGCCGACAGCGGCGCGAGCGGCCTCCTCCTCGCGCATTTTTACAAAGTCGGCGGCCTCAGGAAGGGCACGACGCAGCCACAGGGCCAAGGCGATCGGAATAATGCCAAGCGCGAAGAGTATTCGCCAGGTATGAGGCTCAGCGGAGGTACCACGGGTAAGGTACTCGATGAGGGCATACACCTGAGCCGTCACACCGGCGCCAAGGGAAAATCCGGAAATAAGGAACCCGGAGGCCTTATTCCGCAGACGCACTGGCCAGGACTCAATGACGTAGGTGGCTGAAGAGCCGTACTCACCGGCCATACCCATGCCGATGCAGACACGGGCGACGAAGATAACCCAGAAAGCCGGGGCAATGGCACAGACGACCGATCCACCCGCATAAAGCAGAATTGAGATGACCATAGCCTCCTTGCGGCCGATCCGGTCACCGATAGCTCCCAGCAGCAGTCCGCCGAACCATCGCGCAATAAAAGCAGCGGACACCAGGGTCGCAGTCGCCGCTGGTCCGACGTGAAAGGTCCTGCCGATCTCGGTGAGGACCAGCGTGATCATGACGAAGTCGAATCCGTCCAGCAGATAACCGATCCATGCTGCCCAGAAGGATTTCCACTGCGTGCCAGTCAACTCGTCACGCCATGATTTCCTGGCTGCTATGGCCTCGACGTTGCTCAT > 872 HMPREF9566_00228 KEGG:_gdj:Gdia_1773_2.6e-15_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFT22118.1 11 MSNVEAIAARKSWRDELTGTQWKSFWAAWIGYLLDGFDFVMITLVLTEIGRTFHVGPAATATLVSAAFIARWFGGLLLGAIGDRIGRKEAMVISILLYAGGSVVCAIAPAFWVIFVARVCIGMGMAGEYGSSATYVIESWPVRLRNKASGFLISGFSLGAGVTAQVYALIEYLTRGTSAEPHTWRILFALGIIPIALALWLRRALPEAADFVKMREEEAARAAVGETVKKTDMFTMLFARNPKRSIINIVLALTTFGCLIVIYLFKSGVPGLVLALLWVVVAAVMVSFMVQFEGPRWPTGVAVMITVFVAFLYSWPLQALLPTYYRQTLGLASDTASNLVTATSFGAAAGCIMAGFIGDRFGTRKAYWVSLLISEFLVLPVFLVSRGMVHSSVIWVVLLGVFIFVQQMFGQGISGLLPKFISNYFPVEKRAAGLGFSYNVGALGGAIAPVLGIALAGDPATGVGGVLPSSWGLGWTLFILSFVFTAVIIVLIAINFPLRMQKLLRPDHVRPADRMDHVDEELAVSRNPDTIVAS high_GC_Gram+ Propionibacterium_acnes_HL045PA1 Propionibacterium_acnes_HL045PA1 ADZA01000001 200962..202566 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1605 Propionibacterium_acnes_HL045PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL045PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.4xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL045PA1_P_acnesHL045PA1-1.0_Cont1.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4EC05_PROAC.gb Propionicibacterium 301752413 Submitted_(06-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZA01000001 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1605 NA genomic_DNA NA HL045PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765068 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZA01000001.1 ATGAGCAACGTCGAGGCCATAGCAGCCAGGAAATCATGGCGTGACGAGTTGACTGGCACGCAGTGGAAATCCTTCTGGGCAGCATGGATCGGTTATCTGCTGGACGGATTCGACTTCGTCATGATCACGCTGGTCCTCACCGAGATCGGCAGGACCTTTCACGTCGGACCAGCGGCGACTGCGACCCTGGTGTCCGCTGCTTTTATTGCGCGATGGTTCGGCGGACTGCTGCTGGGAGCTATCGGTGACCGGATCGGCCGCAAGGAGGCTATGGTCATCTCAATTCTGCTTTATGCGGGTGGATCGGTCGTCTGTGCCATTGCCCCGGCTTTCTGGGTTATCTTCGTCGCCCGTGTCTGCATCGGCATGGGTATGGCCGGTGAGTACGGCTCTTCAGCCACCTACGTCATTGAGTCCTGGCCAGTGCGTCTGCGGAATAAGGCCTCCGGGTTCCTTATTTCCGGATTTTCCCTTGGCGCCGGTGTGACGGCTCAGGTGTATGCCCTCATCGAGTACCTTACCCGTGGTACCTCCGCTGAGCCTCATACCTGGCGAATACTCTTCGCGCTTGGCATTATTCCGATCGCCTTGGCCCTGTGGCTGCGTCGTGCCCTTCCTGAGGCCGCCGACTTTGTAAAAATGCGCGAGGAGGAGGCCGCTCGCGCCGCTGTCGGCGAGACTGTCAAGAAGACTGACATGTTCACCATGCTCTTCGCACGTAACCCGAAGCGAAGCATCATTAACATTGTTCTGGCCCTCACAACTTTCGGATGCCTAATCGTCATTTACCTGTTCAAGAGCGGCGTCCCGGGGCTCGTGTTGGCATTGCTGTGGGTCGTTGTCGCGGCCGTCATGGTGAGCTTCATGGTCCAGTTCGAGGGACCGCGTTGGCCGACAGGTGTGGCCGTTATGATCACGGTGTTTGTCGCCTTCCTCTACTCCTGGCCTTTGCAGGCTCTGTTGCCTACCTACTATCGCCAAACCCTGGGCCTGGCGAGCGACACCGCTTCCAATCTCGTGACCGCCACTTCTTTTGGCGCGGCAGCGGGCTGCATCATGGCCGGATTTATCGGTGACAGATTCGGAACCCGCAAGGCCTATTGGGTCTCCCTGCTCATCTCGGAGTTCCTCGTCCTGCCGGTCTTCCTCGTCAGCCGAGGCATGGTGCATTCCTCGGTGATATGGGTCGTGCTTCTTGGAGTTTTCATCTTTGTCCAGCAGATGTTCGGACAAGGTATCTCTGGTCTGCTACCGAAGTTCATTTCGAACTACTTTCCGGTCGAGAAGCGCGCTGCTGGTTTGGGTTTCTCTTATAACGTCGGAGCTCTTGGTGGGGCTATCGCCCCGGTCCTCGGCATTGCCCTGGCAGGTGATCCAGCTACCGGTGTTGGCGGTGTGCTGCCCTCCAGCTGGGGCCTCGGATGGACCCTGTTCATCTTGTCCTTCGTATTCACCGCGGTGATCATCGTTCTTATCGCCATCAATTTCCCGCTCCGGATGCAGAAGCTGTTGCGCCCCGACCACGTGCGTCCCGCTGACCGGATGGATCACGTCGATGAAGAGCTTGCTGTTTCCCGGAACCCTGACACTATCGTCGCCTCGTGA > 873 HMPREF9585_01228 KEGG:_ach:Achl_0944_1.8e-81_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_sugar_porter_family_protein EFS48873.1 11 MVDETPPSGKHRGIGALAAVATLGSLLFGYDTGVISGALPYLYMPHLPGGLALTPMQEGAIGGTLLIGAAIGAVTGGIMSDRWGRRHNITILAVIFLLGALGTTFSPNVFVMYVFRFVLGFAVGAASATVPVYLAENAPKRIRGSIVAIDQLMIVTGQLLAFSMNAIINAAHGGPQLIIKANNNPDSLGITKGTYSWDQILALQASKGGPLEGDQYRAFVENLVIQSGNGAAWRWMLVLCSIPAIALWIGIRLMPESARWYLAKGRVADAVGALKRVRDPQKDGPLDAEVEEMLVTQQRELENKYQGNAFAHVWRTPWLRKLMLVGIFLAIVNQTTGVNTVMYYAPKVLEYAGMTTSASITAQVANGVMSVIGSVGGLWLILKFSRRSLLIFDVSAVGITLLVIAGTFQFTIAPHIADKTTPPTWAPYLILGLMAVFMLIVQSTNGTVVWTMLGEMFPANVRGIMNGTAIFFMWVINAVITFTFPSMMASLGGGLTYTIYGMMNLVIAVVLFKIMPETRNKSLEQIETYMEERYS high_GC_Gram+ Propionibacterium_acnes_HL083PA1 Propionibacterium_acnes_HL083PA1 ADZC01000012 228295..229902 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1608 Propionibacterium_acnes_HL083PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL083PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_68.2xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL083PA1_P_acnesHL083PA1-1.0_Cont10.2,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4EMD3_PROAC.gb Propionicibacterium 301752474 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZC01000012 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1608 NA genomic_DNA NA HL083PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765087 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZC01000012.1 ATGGTTGATGAGACTCCGCCGTCCGGCAAACACCGGGGCATCGGGGCGCTTGCTGCCGTGGCGACCCTGGGATCCCTACTCTTTGGATATGACACAGGTGTCATATCGGGGGCGCTTCCCTACCTGTACATGCCCCACCTGCCTGGCGGTCTCGCCTTAACACCGATGCAGGAGGGCGCCATCGGCGGCACACTCCTCATCGGCGCTGCAATTGGCGCCGTGACCGGCGGCATCATGTCCGATCGGTGGGGGCGGCGCCATAACATCACGATACTCGCGGTCATCTTCTTGCTGGGGGCCCTAGGCACGACGTTCTCGCCGAACGTGTTCGTGATGTACGTCTTCCGCTTCGTGCTGGGATTCGCTGTCGGCGCAGCGTCAGCCACTGTTCCGGTGTACCTTGCTGAAAACGCGCCAAAGCGCATCAGGGGGTCGATCGTGGCTATCGACCAACTCATGATCGTCACCGGTCAGCTGTTGGCGTTCTCCATGAACGCCATCATTAACGCCGCTCATGGCGGTCCGCAGTTGATCATCAAGGCCAACAACAATCCGGACAGCCTCGGGATCACCAAGGGCACCTATTCGTGGGACCAGATTCTGGCTCTCCAGGCTTCGAAGGGCGGGCCGCTGGAGGGGGACCAGTACCGCGCGTTCGTGGAGAATCTCGTCATCCAGTCTGGTAACGGTGCGGCCTGGCGGTGGATGCTGGTGCTGTGCTCAATCCCGGCCATCGCGCTGTGGATAGGTATTCGCCTCATGCCTGAGTCGGCTCGTTGGTACTTGGCCAAAGGTCGGGTGGCTGATGCTGTCGGAGCTCTCAAACGAGTGCGCGATCCCCAGAAGGATGGTCCTCTGGATGCTGAGGTCGAGGAGATGCTTGTCACCCAGCAGCGCGAGTTGGAGAACAAGTATCAGGGCAACGCCTTTGCCCATGTGTGGCGAACGCCGTGGCTACGCAAACTCATGCTAGTAGGTATCTTCCTTGCAATCGTCAACCAGACGACAGGCGTTAATACCGTGATGTATTACGCGCCGAAAGTACTGGAGTATGCCGGTATGACGACCTCTGCCTCGATCACCGCGCAGGTGGCCAATGGTGTCATGTCCGTCATTGGTTCTGTTGGTGGTTTGTGGCTTATCCTCAAGTTCAGCCGGCGTAGTTTACTCATTTTCGACGTCTCCGCCGTGGGCATTACTTTGCTTGTCATTGCGGGAACCTTCCAGTTCACAATCGCCCCGCACATTGCTGACAAGACCACGCCGCCGACGTGGGCACCGTACCTCATCCTTGGTCTTATGGCGGTGTTTATGCTTATCGTGCAATCTACCAATGGCACGGTGGTGTGGACCATGCTCGGTGAGATGTTCCCGGCAAACGTCCGCGGCATCATGAATGGCACGGCCATCTTCTTCATGTGGGTTATTAACGCTGTCATCACCTTCACCTTCCCGTCCATGATGGCAAGTCTGGGAGGTGGGTTGACGTACACCATCTACGGCATGATGAATCTCGTCATCGCAGTAGTCCTCTTCAAGATCATGCCTGAGACCCGAAATAAGTCCTTGGAGCAGATCGAAACGTACATGGAAGAGCGCTACTCCTGA > 874 HMPREF9564_00724 KEGG:_ach:Achl_0944_1.8e-81_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_sugar_porter_family_protein EFT18630.1 11 MVDETPPSGKHRGIGALAAVATLGSLLFGYDTGVISGALPYLYMPHLPGGLALTPMQEGAIGGTLLIGAAIGAVTGGIMSDRWGRRHNITILAVIFLLGALGTTFSPNVFVMYVFRFVLGFAVGAASATVPVYLAENAPKRIRGSIVAIDQLMIVTGQLLAFSMNAIINAAHGGPQLIIKANNNPDSLGITKGTYSWDQILALQASKGGPLEGDQYRAFVENLVIQSGNGAAWRWMLVLCSIPAIALWIGIRLMPESARWYLAKGRVADAVGALKRVRDPQKDGPLDAEVEEMLVTQQRELENKYQGNAFAHVWRTPWLRKLMLVGIFLAIVNQTTGVNTVMYYAPKVLEYAGMTTSASITAQVANGVMSVIGSVGGLWLILKFSRRSLLIFDVSAVGITLLVIAGTFQFTIAPHIADKTTPPTWAPYLILGLMAVFMLIVQSTNGTVVWTMLGEMFPANVRGIMNGTAIFFMWVINAVITFTFPSMMASLGGGLTYTIYGMMNLVIAVVLFKIMPETRNKSLEQIETYMEERYS high_GC_Gram+ Propionibacterium_acnes_HL053PA1 Propionibacterium_acnes_HL053PA1 ADZD01000006 89035..90642 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1608 Propionibacterium_acnes_HL053PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL053PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_68.9xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL053PA1_P_acnesHL053PA1-1.0_Cont5.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4ET53_PROAC.gb Propionicibacterium 301752516 Submitted_(06-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZD01000006 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1608 NA genomic_DNA NA HL053PA1 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765066 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZD01000006.1 TCAGGAGTAGCGCTCTTCCATGTACGTTTCGATCTGCTCCAAGGACTTATTTCGGGTCTCAGGCATGATCTTGAAGAGGACTACTGCGATGACGAGATTCATCATGCCGTAGATGGTGTACGTCAACCCACCTCCCAGACTTGCCATCATGGACGGGAAGGTGAAGGTGATGACAGCGTTAATAACCCACATGAAGAAGATGGCCGTGCCATTCATGATGCCGCGGACGTTTGCCGGGAACATCTCACCGAGCATGGTCCACACCACCGTGCCATTGGTAGATTGCACGATAAGCATAAACACCGCCATAAGACCAAGGATGAGGTACGGTGCCCACGTCGGCGGCGTGGTCTTGTCAGCAATGTGCGGGGCGATTGTGAACTGGAAGGTTCCCGCAATGACAAGCAAAGTAATGCCCACGGCGGAGACGTCGAAAATGAGTAAACTACGCCGGCTGAACTTGAGGATAAGCCACAAACCACCAACAGAACCAATGACGGACATGACACCATTGGCCACCTGCGCGGTGATCGAGGCAGAGGTCGTCATACCGGCATACTCCAGTACTTTCGGCGCGTAATACATCACGGTATTAACGCCTGTCGTCTGGTTGACGATTGCAAGGAAGATACCTACTAGCATGAGTTTGCGTAGCCACGGCGTTCGCCACACATGGGCAAAGGCGTTGCCCTGATACTTGTTCTCCAACTCGCGCTGCTGGGTGACAAGCATCTCCTCGACCTCAGCATCCAGAGGACCATCCTTCTGGGGATCGCGCACTCGTTTGAGAGCTCCGACAGCATCAGCCACCCGACCTTTGGCCAAGTACCAACGAGCCGACTCAGGCATGAGGCGAATACCTATCCACAGCGCGATGGCCGGGATTGAGCACAGCACCAGCATCCACCGCCAGGCCGCACCGTTACCAGACTGGATGACGAGATTCTCCACGAACGCGCGGTACTGGTCCCCCTCCAGCGGCCCGCCCTTCGAAGCCTGGAGAGCCAGAATCTGGTCCCACGAATAGGTGCCCTTGGTGATCCCGAGGCTGTCCGGATTGTTGTTGGCCTTGATGATCAACTGCGGACCGCCATGAGCGGCGTTAATGATGGCGTTCATGGAGAACGCCAACAGCTGACCGGTGACGATCATGAGTTGGTCGATAGCCACGATCGACCCCCTGATGCGCTTTGGCGCGTTTTCAGCAAGGTACACCGGAACAGTGGCTGACGCTGCGCCGACAGCGAATCCCAGCACGAAGCGGAAGACGTACATCACGAACACGTTCGGCGAGAACGTCGTGCCTAGGGCCCCCAGCAAGAAGATGACCGCGAGTATCGTGATGTTATGGCGCCGCCCCCACCGATCGGACATGATGCCGCCGGTCACGGCGCCAATTGCAGCGCCGATGAGGAGTGTGCCGCCGATGGCGCCCTCCTGCATCGGTGTTAAGGCGAGACCGCCAGGCAGGTGGGGCATGTACAGGTAGGGAAGCGCCCCCGATATGACACCTGTGTCATATCCAAAGAGTAGGGATCCCAGGGTCGCCACGGCAGCAAGCGCCCCGATGCCCCGGTGTTTGCCGGACGGCGGAGTCTCATCAACCAT > 875 HMPREF9575_00460 KEGG:_rcm:A1E_04550_2.4e-12_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS41720.1 11 MYTYTTFAAYFEDQFFSPDDPHKSIYIYAIFWATFIMRPFGSWFFGRWADRHGRRSALIMAVTIMAVGSLVISVLPTRGTIGVGAPILLLICRIVQGFATGGEYGTSATYMSEASTKGHRGFFSSFQYFTLVGGLVTAQAVLLLLSSLMSEATIHAWGWRIPFFIGGVAALIVFFMQKTMDESLSTEHLKSVRSGEDSSSGSLKELFGNHLGNFLLAFTIASGGTLCFYVYTVNAPNIVHSIFSSTPMAATAVNLIALFILMLGQPLGGLIGDRIGRKPVLLFFAAGGVVYTWVLVTCLSHARKPVTAFLMLLMGYIFLTGYTSISAVVKSDLFPTDVRALGVGMAHGFANSLFGGTAPLIYVWAKQGDAIPAFIGYVTALSAVTLLTILFGLTTRTASHLDAPTKGGHD high_GC_Gram+ Propionibacterium_acnes_HL110PA1 Propionibacterium_acnes_HL110PA1 ADZE01000005 64031..65263 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1233 Propionibacterium_acnes_HL110PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL110PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.9xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL110PA1_P_acnesHL110PA1-1.0_Cont45.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4EZR9_PROAC.gb Propionicibacterium 301752549 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZE01000005 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1233 NA genomic_DNA NA HL110PA1 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765077 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZE01000005.1 TTAGTCGTGCCCACCCTTCGTCGGCGCATCCAGGTGTGACGCAGTCCGTGTGGTCAGCCCGAAGAGGATCGTAAGTAAGGTGACCGCGGACAGCGCCGTCACATACCCGATGAAGGCGGGGATCGCGTCACCCTGTTTCGCCCACACGTAAATGAGTGGAGCCGTGCCGCCGAACAGGGAATTCGCGAAACCATGGGCCATCCCAACACCCAGCGCCCTGACATCGGTTGGGAAAAGGTCGGACTTCACAACTGCGGAGATCGAGGTATATCCGGTAAGGAAGATATAGCCCATGAGCAGCATGAGGAATGCAGTTACGGGCTTGCGGGCATGCGACAGACAGGTCACGAGAACCCAGGTATAAACGACTCCACCGGCGGCAAAGAAGAGCAACACCGGTTTGCGTCCGATCCGGTCACCGATGAGGCCTCCCAGCGGTTGCCCGAGCATGAGGATGAATAGGGCGATGAGGTTGACCGCGGTTGCCGCCATCGGAGTGCTGCTGAAAATCGAATGGACGATATTCGGTGCATTGACGGTGTAGACGTAGAAGCACAGGGTACCGCCGCTGGCGATGGTAAAAGCCAGGAGGAAGTTACCGAGATGGTTTCCAAAGAGCTCTTTCAGACTTCCTGACGAGCTGTCCTCACCCGACCGCACGGATTTAAGATGTTCGGTACTCAGCGATTCATCCATCGTCTTCTGCATGAAGAAAACGATGAGCGCTGCGACGCCACCGATGAAGAATGGGATGCGCCATCCCCAGGCATGGATCGTGGCCTCACTCATGAGGGAGGACAGCAGGAGTAGGACGGCCTGGGCTGTCACTAAACCACCCACGAGGGTGAAGTACTGGAACGAGGAGAAGAAACCGCGGTGTCCCTTGGTGGAGGCTTCTGACATGTAGGTGGCCGAGGTGCCGTACTCACCTCCTGTGGCGAATCCTTGCACGATACGACAGATGAGCAACAGGATCGGGGCCCCCACTCCGATGGTGCCTCGGGTGGGCAACACGGAGATGACGAGGGAGCCGACGGCCATGATTGTCACTGCCATGATGAGGGCGGACCGACGTCCGTGACGGTCGGCCCAGCGACCGAAGAACCACGATCCGAACGGCCTCATGATGAAGGTCGCCCAGAAAATCGCGTAGATGTAGATGCTCTTGTGCGGGTCGTCAGGCGAGAAGAACTGGTCCTCGAAATAGGCTGCGAACGTCGTGTACGTGTACAC > 876 HMPREF9575_00574 NA transporter,_major_facilitator_family_protein EFS41833.1 11 MSNVEAIAARKSWRDELTGTQWKSFWAAWIGYLLDGFDFVMITLVLTEIGRTFHVGPAATATLVSAAFIARWFGGLLLGAIGDRIGRKEAMVISILLYAGGSVVCAIAPAFWVIFVARVCIGMGMAGEYGSSATYVIESWPVRLRNKASGFLISGFSLGAGVTAQVYALIEYLTRGTSAEPHTWRILFALGIIPIALALWLRRALPEAADFVKMREEEAARAAVGETVKKTDMFTMLFARNPKRSIINIVLALTTFGCLIVIYLFKSGVPGLVLALLWVVVAAVMVSFMVQFEGPRWPTGVAVMITVFVAFLYSWPLQALLPTYYRQTLGLASDTASNLVTATSFGAAAGCIMAGFIGDRFGTRKAYWVSLLISEFLVLPVFLVSRGMVHSSVIWVVLLGVFIFVQQMFGQGISGLLPKFISNYFPVEKRAAGLGFSYNVGALGGAIAPVLGIALAGDPATGVGGVLPSSWGLGWTLFILSFVFTAVIIVLIAINFPLRMQKLLRPDHVRPADRMDHVDEELAVSRNPDTIVAS high_GC_Gram+ Propionibacterium_acnes_HL110PA1 Propionibacterium_acnes_HL110PA1 ADZE01000005 165321..166925 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1605 Propionibacterium_acnes_HL110PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL110PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.9xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 09-DEC-2010 Propionibacterium_acnes_HL110PA1_P_acnesHL110PA1-1.0_Cont45.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4F032_PROAC.gb Propionicibacterium 301752549 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZE01000005 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1605 NA genomic_DNA NA HL110PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765077 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZE01000005.1 ATGAGCAACGTCGAGGCCATAGCAGCCAGGAAATCATGGCGTGACGAGTTGACTGGCACGCAGTGGAAATCCTTCTGGGCAGCATGGATCGGTTATCTGCTGGACGGATTCGACTTCGTCATGATCACGCTGGTCCTCACCGAGATCGGCAGGACCTTTCACGTCGGACCAGCGGCGACTGCGACCCTGGTGTCCGCTGCTTTTATTGCGCGATGGTTCGGCGGACTGCTGCTGGGAGCTATCGGTGACCGGATCGGCCGCAAGGAGGCTATGGTCATCTCAATTCTGCTTTATGCGGGTGGATCGGTCGTCTGTGCCATTGCCCCGGCTTTCTGGGTTATCTTCGTCGCCCGTGTCTGCATCGGCATGGGTATGGCCGGTGAGTACGGCTCTTCAGCCACCTACGTCATTGAGTCCTGGCCAGTGCGTCTGCGGAATAAGGCCTCCGGGTTCCTTATTTCCGGATTTTCCCTTGGCGCCGGTGTGACGGCTCAGGTGTATGCCCTCATCGAGTACCTTACCCGTGGTACCTCCGCTGAGCCTCATACCTGGCGAATACTCTTCGCGCTTGGCATTATTCCGATCGCCTTGGCCCTGTGGCTGCGTCGTGCCCTTCCTGAGGCCGCCGACTTTGTAAAAATGCGCGAGGAGGAGGCCGCTCGCGCCGCTGTCGGCGAGACTGTCAAGAAGACTGACATGTTCACCATGCTCTTCGCACGTAACCCGAAGCGAAGCATCATTAACATTGTTCTGGCCCTCACAACTTTCGGATGCCTAATCGTCATTTACCTGTTCAAGAGCGGCGTCCCAGGGCTCGTGTTGGCATTGCTGTGGGTCGTTGTCGCGGCCGTCATGGTGAGCTTCATGGTCCAGTTCGAGGGACCGCGTTGGCCGACAGGTGTGGCCGTTATGATCACGGTGTTTGTCGCCTTCCTCTACTCCTGGCCTTTGCAGGCTCTGTTGCCTACCTACTATCGCCAAACCCTGGGCCTGGCGAGCGACACCGCTTCCAATCTCGTGACCGCCACTTCTTTTGGCGCGGCAGCGGGCTGCATCATGGCCGGATTTATCGGTGACAGATTCGGAACCCGCAAGGCCTATTGGGTCTCCCTGCTCATCTCGGAGTTCCTCGTCCTGCCGGTCTTCCTCGTCAGCCGAGGCATGGTGCATTCCTCGGTGATATGGGTCGTGCTTCTTGGAGTTTTCATCTTTGTCCAGCAGATGTTCGGACAAGGTATCTCTGGTCTGCTACCGAAGTTCATTTCGAACTACTTTCCGGTCGAGAAGCGCGCTGCTGGTTTGGGTTTCTCTTATAACGTCGGAGCTCTTGGTGGGGCTATCGCCCCGGTCCTCGGCATTGCCCTGGCAGGTGATCCAGCTACCGGTGTTGGCGGTGTGCTGCCCTCCAGCTGGGGCCTCGGATGGACCCTGTTCATCTTGTCCTTCGTATTCACCGCGGTGATCATCGTTCTTATCGCCATCAATTTCCCGCTCCGGATGCAGAAGCTGTTGCGCCCCGACCACGTGCGTCCCGCTGACCGGATGGATCACGTCGATGAAGAGCTTGCTGTTTCCCGGAACCCTGACACTATCGTCGCCTCGTGA > 877 HMPREF9618_00138 KEGG:_rcm:A1E_04550_2.4e-12_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFT08962.1 11 MYTYTTFAAYFEDQFFSPDDPHKSIYIYAIFWATFIMRPFGSWFFGRWADRHGRRSALIMAVTIMAVGSLVISVLPTRGTIGVGAPILLLICRIVQGFATGGEYGTSATYMSEASTKGHRGFFSSFQYFTLVGGLVTAQAVLLLLSSLMSEATIHAWGWRIPFFIGGVAALIVFFMQKTMDESLSTEHLKSVRSGEDSSSGSLKELFGNHLGNFLLAFTIASGGTLCFYVYTVNAPNIVHSTFSSTPMAATAVNLIALFILMLGQPLGGLIGDRIGRKPVLLFFAAGGVVYTWVLVTCLSHARKPVTAFLMLLMGYIFLTGYTSISAVVKSDLFPTDVRALGVGMAHGFANSLFGGTAPLIYVWAKQGDAIPAFIGYVTALSAVTLLTILFGLTTRTASHLDAPTKGGHD high_GC_Gram+ Propionibacterium_acnes_HL082PA1 Propionibacterium_acnes_HL082PA1 ADZJ01000002 117620..118852 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1233 Propionibacterium_acnes_HL082PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL082PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL082PA1_P_acnesHL082PA1-1.0_Cont5.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4FKY6_PROAC.gb Propionicibacterium 302315446 Submitted_(06-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZJ01000002 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1233 NA genomic_DNA NA HL082PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765120 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZJ01000002.1 GTGTACACGTACACGACGTTCGCAGCCTATTTCGAGGACCAGTTCTTCTCGCCTGACGACCCGCACAAGAGCATCTACATCTACGCGATTTTCTGGGCGACCTTCATCATGAGGCCGTTCGGATCGTGGTTCTTCGGTCGCTGGGCCGACCGTCACGGACGTCGGTCCGCCCTCATCATGGCAGTGACAATCATGGCCGTCGGCTCCCTCGTCATCTCCGTGTTGCCCACCCGAGGCACCATCGGAGTGGGGGCCCCGATCCTGTTGCTCATCTGTCGTATCGTGCAAGGATTCGCCACAGGAGGTGAGTACGGCACCTCGGCCACCTACATGTCAGAAGCCTCCACCAAGGGACACCGCGGTTTCTTCTCCTCGTTCCAGTACTTCACCCTCGTGGGTGGTTTAGTGACAGCCCAGGCCGTCCTACTCCTGCTGTCCTCCCTCATGAGTGAGGCCACGATCCATGCCTGGGGATGGCGCATCCCATTCTTCATCGGTGGCGTCGCAGCGCTCATCGTTTTCTTCATGCAGAAGACGATGGATGAATCGCTGAGTACCGAACATCTTAAATCCGTGCGGTCGGGTGAGGACAGCTCGTCAGGAAGTCTGAAAGAGCTCTTTGGAAACCATCTCGGTAACTTCCTCCTGGCTTTTACCATCGCCAGCGGCGGTACCCTGTGCTTCTACGTCTACACCGTCAATGCACCGAATATCGTCCATTCGACTTTCAGCAGCACTCCGATGGCGGCAACCGCGGTCAACCTCATCGCCCTATTCATCCTCATGCTCGGGCAACCGCTGGGAGGCCTCATCGGTGACCGGATCGGACGCAAACCGGTGTTGCTCTTCTTTGCCGCCGGTGGAGTCGTTTATACCTGGGTTCTCGTGACCTGTCTGTCGCATGCCCGCAAGCCCGTAACTGCATTCCTCATGCTGCTCATGGGCTATATCTTCCTTACCGGATATACCTCGATCTCCGCAGTTGTGAAGTCCGACCTTTTCCCAACCGATGTCAGGGCGCTGGGTGTTGGGATGGCCCATGGTTTCGCGAATTCCCTGTTCGGCGGCACGGCTCCACTCATTTACGTGTGGGCGAAACAGGGTGACGCGATCCCCGCCTTCATCGGGTATGTGACGGCGCTGTCCGCGGTCACCTTACTTACGATCCTCTTCGGGCTGACCACACGGACTGCGTCACACCTGGATGCGCCGACGAAGGGTGGGCACGACTAA > 878 HMPREF9600_01045 KEGG:_rcm:A1E_04550_2.4e-12_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS84900.1 11 MYTYTTFAAYFEDQFFSPDDPHKSIYIYAIFWATFIMRPFGSWFFGRWADRHGRRSALIMAVTIMAVGSLVISVLPTRGTIGVGAPILLLICRIVQGFATGGEYGTSATYMSEASTKGHRGFFSSFQYFTLVGGLVTAQAVLLLLSSLMSEATIHAWGWRIPFFIGGVAALIVFFMQKTMDESLSTEHLKSVRSGEDSSSGSLKELFGNHLGNFLLAFTIASGGTLCFYVYTVNAPNIVHSTFSSTPMAATAVNLIALFILMLGQPLGGLIGDRIGRKPVLLFFAAGGVVYTWVLVTCLSHARKPVTAFLMLLMGYIFLTGYTSISAVVKSDLFPTDVRALGVGMAHGFANSLFGGTAPLIYVWAKQGDAIPAFIGYVTALSAVTLLTILFGLTTRTASHLDAPTKGGHD high_GC_Gram+ Propionibacterium_acnes_HL050PA3 Propionibacterium_acnes_HL050PA3 ADZK01000009 117640..118872 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1233 Propionibacterium_acnes_HL050PA3_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL050PA3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_67.8xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL050PA3_P_acnesHL050PA3-1.0_Cont5.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4FVX0_PROAC.gb Propionicibacterium 301752605 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZK01000009 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1233 NA genomic_DNA NA HL050PA3 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765102 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZK01000009.1 GTGTACACGTACACGACGTTCGCAGCCTATTTCGAGGACCAGTTCTTCTCGCCTGACGACCCGCACAAGAGCATCTACATCTACGCGATTTTCTGGGCGACCTTCATCATGAGGCCGTTCGGATCGTGGTTCTTCGGTCGCTGGGCCGACCGTCACGGACGTCGGTCCGCCCTCATCATGGCAGTGACAATCATGGCCGTCGGCTCCCTCGTCATCTCCGTGTTGCCCACCCGAGGCACCATCGGAGTGGGGGCCCCGATCCTGTTGCTCATCTGTCGTATCGTGCAAGGATTCGCCACAGGAGGTGAGTACGGCACCTCGGCCACCTACATGTCAGAAGCCTCCACCAAGGGACACCGCGGTTTCTTCTCCTCGTTCCAGTACTTCACCCTCGTGGGTGGTTTAGTGACAGCCCAGGCCGTCCTACTCCTGCTGTCCTCCCTCATGAGTGAGGCCACGATCCATGCCTGGGGATGGCGCATCCCATTCTTCATCGGTGGCGTCGCAGCGCTCATCGTTTTCTTCATGCAGAAGACGATGGATGAATCGCTGAGTACCGAACATCTTAAATCCGTGCGGTCGGGTGAGGACAGCTCGTCAGGAAGTCTGAAAGAGCTCTTTGGAAACCATCTCGGTAACTTCCTCCTGGCTTTTACCATCGCCAGCGGCGGTACCCTGTGCTTCTACGTCTACACCGTCAATGCACCGAATATCGTCCATTCGACTTTCAGCAGCACTCCGATGGCGGCAACCGCGGTCAACCTCATCGCCCTATTCATCCTCATGCTCGGGCAACCGCTGGGAGGCCTCATCGGTGACCGGATCGGACGCAAACCGGTGTTGCTCTTCTTTGCCGCCGGTGGAGTCGTTTATACCTGGGTTCTCGTGACCTGTCTGTCGCATGCCCGCAAGCCCGTAACTGCATTCCTCATGCTGCTCATGGGCTATATCTTCCTTACCGGATATACCTCGATCTCCGCAGTTGTGAAGTCCGACCTTTTCCCAACCGATGTCAGGGCGCTGGGTGTTGGGATGGCCCATGGTTTCGCGAATTCCCTGTTCGGCGGCACGGCTCCACTCATTTACGTGTGGGCGAAACAGGGTGACGCGATCCCCGCCTTCATCGGGTATGTGACGGCGCTGTCCGCGGTCACCTTACTTACGATCCTCTTCGGGCTGACCACACGGACTGCGTCACACCTGGATGCGCCGACGAAGGGTGGGCACGACTAA > 879 HMPREF9600_01754 KEGG:_dfe:Dfer_1599_7.1e-32_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS83757.1 11 MSTSTTPKQSALDLIDSRPLTRNQKNLVALAVVGNISEFFDIFLIGFVVSVLTKPWNLTGTEAGVILACSGLGTVIGAIMWGRLADKIGRRSSFFWCVLLFVVFTVVSVFTPDRGWIMLAILRIGVGIGVGGLNITSIPYVQEFVPAKQRGLLAGLASVFIPLGLFLGSLAQNALGDNWRALIALGAIPVFLLVWIRFVPESPRFLQSHGRDKEAREALAWALDMPADDIGDLPAVEHVQDASYSLVFGKYRKSLLIVSLGSFCFILGSFTIQSWGQTLLKTGFGKSPEQVGTLFMFVSLADLIGRFLSAWLADRIGRRATMLSFGLIGAGGTLIIALSARLGWGWQIFFVGVLIAMAFADGAFGILNAFGAEQFPNEARSTGLGLGYGIGATAKIIGPALMGLMVGGSAVKQNVTLDAVFPAFILFAVLLVIGGMTYMFARETRGTSLDTI high_GC_Gram+ Propionibacterium_acnes_HL050PA3 Propionibacterium_acnes_HL050PA3 ADZK01000021 155599..156957 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1359 Propionibacterium_acnes_HL050PA3_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL050PA3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_67.8xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL050PA3_P_acnesHL050PA3-1.0_Cont26.3,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4FYA3_PROAC.gb Propionicibacterium 301752593 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZK01000021 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1359 NA genomic_DNA NA HL050PA3 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765102 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZK01000021.1 ATGTCCACCTCAACAACACCCAAACAATCAGCTCTAGACCTCATCGATTCGCGTCCCTTAACGCGCAATCAGAAGAATCTTGTTGCCCTAGCCGTCGTCGGAAATATCTCCGAGTTCTTTGATATCTTCCTCATTGGTTTCGTCGTATCCGTCCTGACTAAGCCATGGAATCTGACTGGCACTGAGGCGGGCGTCATTCTCGCCTGTTCCGGTCTGGGGACGGTCATTGGTGCCATCATGTGGGGACGTCTTGCCGACAAGATCGGACGCCGCTCCTCTTTCTTCTGGTGCGTGCTCCTGTTCGTCGTGTTCACTGTAGTATCAGTGTTCACCCCAGATCGTGGCTGGATTATGCTCGCCATTTTGCGTATTGGCGTGGGGATCGGAGTCGGCGGACTTAATATCACCTCGATTCCCTACGTCCAGGAGTTCGTGCCTGCTAAGCAGCGCGGTCTTCTTGCCGGCCTGGCGTCGGTATTCATCCCCCTCGGTCTGTTCTTGGGGTCGTTAGCACAAAATGCACTGGGCGATAATTGGCGTGCCCTCATCGCTTTGGGCGCCATTCCTGTTTTCCTGCTGGTGTGGATCCGTTTCGTGCCCGAATCACCACGGTTCCTACAGAGTCATGGGCGTGATAAGGAAGCACGCGAGGCCCTAGCCTGGGCACTCGATATGCCCGCTGACGACATTGGAGATTTGCCTGCCGTTGAACACGTCCAAGACGCTTCCTACTCACTTGTCTTTGGTAAATACCGCAAGAGTCTTCTCATCGTCAGTCTGGGATCATTCTGCTTCATTCTGGGCTCTTTTACGATTCAGTCGTGGGGCCAGACCCTGCTCAAGACCGGCTTTGGCAAGTCTCCCGAGCAAGTCGGGACCCTGTTCATGTTCGTTTCCCTGGCCGATCTCATCGGGCGCTTCCTATCAGCATGGCTGGCAGACCGCATTGGTCGGAGAGCCACCATGTTGTCGTTTGGCCTCATCGGTGCTGGCGGGACTCTCATCATCGCCCTTTCGGCCCGCCTGGGTTGGGGCTGGCAGATCTTCTTCGTCGGTGTCCTCATTGCGATGGCCTTCGCCGACGGCGCCTTCGGCATCCTCAATGCTTTCGGCGCCGAGCAATTCCCCAACGAAGCTCGCTCGACTGGTCTGGGACTGGGCTACGGCATCGGCGCCACCGCCAAGATCATCGGTCCGGCGCTTATGGGACTCATGGTGGGCGGATCTGCCGTCAAGCAGAATGTCACCCTGGACGCGGTATTTCCGGCATTCATCCTGTTCGCTGTGCTGCTAGTCATTGGCGGTATGACGTACATGTTTGCCCGCGAAACTCGTGGCACCTCGCTCGACACGATCTGA > 880 PROSTU_00973 KEGG:_cal:orf19.4384_0.0024_HXT10;_fructose_symporter_K01804;_COG:_COG0477_Permeases_of_the_major_facilitator_superfamily;_Psort_location:_CytoplasmicMembrane,_score:_10.00 hypothetical_protein EDU60992.1 11 MEISQDNVKRTDATLDANARSKCIRGIVGAASGNLVEWFDFYIYAVFAAYFTKALTPQNMDPLTQSIYVWGVFAASFFMRPIGSWLFGRIADRHGRKRSMVASIYLMGFSSFLFAALPTYEQVGMFAPLLLLLVRLLQGLSVGGEYGAVATYMSELGLKGQRGFFASFQYVTLSGGQLLASLLSVILLAFLTEQQLQDGAWRIPFVIGGIAAIVSLIARKRLDETLSNEASEAKESGSLIALLKQHWKSFFLVVGYTAAGSLCFYIITVYSKTYLTNIGIDSKVVGYIMTVSLFVFMLSQPVFGIISDKIGRRAAMITFTLSMLLFIYPVMVIGMRYFAQSPIIIALLLIFLMMLLSFYTSISGLVKAEMFPPHLRALGVGVSYAIGNAIFGGSAPSVALQFKASGAENAFFIYVMVVLCICLFCCFQLPKEPEYLNDRH gamma_subgroup Providencia_stuartii_ATCC_25827 Providencia_stuartii_ATCC_25827 ABJD02000085 56133..57455 Sudarsanam,P.,_Ley,R.,_Guruge,J.,_Turnbaugh,P.J.,_Mahowald,M.,_Liep,D._and_Gordon,J. NA 0:1323 Providencia_stuartii_(16S_rDNA_gene_sequence_is_not_available)_is_amember_of_the_Proteobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_human_feces._The_sequenced_strain_wasobtained_from_ATCC_(ATCC_25827).We_have_collected_8.5X_coverage_in_plasmid_end_reads_and_454_reads.We_have_performed_one_round_of_automated_sequenceimprovement(pre-finishing),_along_with_manual_improvement_thatincludes_breaking_apart_any_mis-assembly,_and_making_manual_joinswhere_possible._Manual_edits_also_are_made_where_the_consensusappears_to_be_incorrect._All_low_quality_data_on_the_ends_ofcontigs_is_removed._Contigs_are_ordered_and_oriented_wherepossible.Sequencing/Assembly:_The_genomic_DNA_was_purified_from_liquidculture_derived_from_a_single_bacterial_colony._A_hybrid_sequencingstrategy_that_utilized_reads_from_both_454_GS-20_and_ABI_3730xlsequencers_was_devised_and_implemented_to_generate_the_draft_genomesequences._454_reads_were_assembled_using_Newbler_(454_LifeSciences)_into_454_de_novo_contigs._These_de_novo_contigs_wereconverted_in_silico_to_800_base_paired_reads_(superreads)_with400_base_overlaps_with_neighboring_superreads._Finally,_PCAP(Huang,_et_al,_Genome_Research,_13:2164,_(2003))_was_used_toassemble_the_super-reads_and_the_conventional_3730xl_capillaryreads.This_sequenced_strain_is_part_of_a_comprehensive,_sequence-basedsurvey_of_members_of_the_normal_human_gut_microbiota._A_jointeffort_of_the_WU-GSC_and_the_Center_for_Genome_Sciences_atWashington_University_School_of_Medicine,_the_purpose_of_thissurvey_is_to_provide_the_general_scientific_community_with_a_broadview_of_the_gene_content_of_100_representatives_of_the_majordivisions_represented_in_the_intestines_microbial_community._Thisinformation_should_provide_a_frame_of_reference_for_analyzingmetagenomic_studies_of_the_human_gut_microbiome._Further_details_ofthis_effort_are_described_in_a_white_paper_entitled_Extending_OurView_of_Self:_the_Human_Gut_Microbiome_Initiative_(HGMI)(http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMISeq.pdf)._These_studies_are_supported_by_National_Human_GenomeResearch_Institute.Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.For_answers_to_your_questions_regarding_this_assembly_or_project,or_any_other_GSC_genome_project,_please_visit_our_Genome_Groups_webpage_(http://genome.wustl.edu/genome_group_index.cgi)_and_email_thedesignated_contact_person.Annotation_was_added_to_the_contigs_in_May_2008.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC. NA 13-MAY-2008 Providencia_stuartii_ATCC_25827_P_stuartii-2.0.1_Cont1629,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Providencia_stuartii_B2PWN7_PROST.gb Providencia_Ewing_1962 172072742 Unpublished NA ABJD02000085 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1323 NA genomic_DNA NA ATCC_25827 NA Providencia_stuartii_(Buttiaux_et_al._1954)_Ewing_1962 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 471874 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Providencia Draft_genome_sequence_of_Providencia_stuartii_(ATCC_25827) NA ABJD02000085.1 TTGGAAATATCTCAAGATAATGTAAAAAGAACGGATGCAACGCTAGATGCCAATGCAAGATCAAAATGCATTCGAGGAATTGTTGGAGCAGCTTCTGGTAACCTAGTGGAATGGTTTGATTTCTATATCTACGCTGTTTTTGCTGCCTATTTTACTAAAGCGCTTACTCCGCAAAATATGGATCCACTGACGCAATCTATCTATGTCTGGGGGGTGTTTGCTGCAAGTTTCTTTATGCGTCCAATTGGTAGTTGGCTATTTGGTCGGATTGCTGATCGCCATGGTCGAAAGCGTTCGATGGTCGCATCCATTTATTTAATGGGGTTTAGTTCTTTCTTGTTTGCCGCCTTGCCAACTTATGAGCAAGTCGGGATGTTTGCACCATTGTTATTGCTACTCGTGCGCTTGTTGCAAGGCTTATCTGTCGGTGGCGAATATGGTGCCGTCGCAACCTATATGAGTGAACTCGGCCTTAAAGGACAACGGGGCTTTTTTGCTTCATTCCAATATGTCACATTATCCGGAGGGCAGTTATTAGCAAGCTTGCTCAGTGTTATTTTATTAGCGTTTCTCACTGAACAACAGCTACAGGATGGTGCTTGGCGTATTCCTTTTGTCATTGGGGGGATTGCAGCGATAGTCTCATTAATTGCTCGAAAACGCCTTGATGAAACCTTAAGTAATGAAGCATCAGAAGCAAAAGAGTCAGGTTCTTTAATCGCTCTTCTAAAACAGCATTGGAAATCTTTCTTTTTAGTCGTTGGTTATACTGCCGCAGGCTCTCTCTGCTTTTATATTATAACCGTTTACTCAAAGACCTATCTCACAAACATCGGTATTGATAGCAAAGTGGTTGGTTACATTATGACCGTATCACTCTTTGTGTTCATGCTGTCTCAACCTGTGTTCGGCATTATTTCTGATAAAATTGGCCGCCGAGCAGCCATGATTACCTTCACGCTATCCATGCTGCTATTTATCTACCCAGTGATGGTGATTGGCATGCGTTATTTTGCTCAGTCTCCTATCATTATCGCCTTATTACTGATTTTCTTAATGATGCTGTTAAGTTTTTACACTTCTATTAGTGGGCTAGTAAAAGCTGAAATGTTCCCACCTCATTTACGAGCGTTAGGTGTTGGGGTCTCATATGCGATAGGGAATGCTATTTTTGGCGGCTCGGCTCCCTCTGTTGCACTACAATTTAAAGCCAGCGGCGCAGAAAACGCCTTTTTTATCTATGTCATGGTTGTATTGTGTATCTGCTTATTTTGCTGCTTCCAGCTGCCTAAAGAGCCTGAATATTTAAATGACCGCCATTAA > 881 HMPREF9598_01078 NA transporter,_major_facilitator_family_protein EFS82268.1 11 MSTSTTPKQSALDLIDSRPLTRNQKNLVALAVVGNISEFFDIFLIGFVVSVLTKPWNLTGTEAGVILACSGLGTVIGAIMWGRLADKIGRRSSFFWCVLLFVVFTVVSVFTPDRGWIMLAILRIGVGIGVGGLNITSIPYVQEFVPAKQRGLLAGLASVFIPLGLFLGSLAQNALGDNWRALIALGAIPVFLLVWIRFVPESPRFLQSHGRDKEAREALAWALDMPADDIGDLPAVEHVQDASYSLVFGKYRKSLLIVSLGSFCFILGSFTIQSWGQTLLKTGFGKSPEQVGTLFMFVSLADLIGRFLSAWLADRIGRRATMLSFGLIGAGGTLIIALSARLGWGWQIFFVGVLIAMAFADGAFGILNAFGAEQFPNEARSTGLGLGYGIGATAKIIGPALMGLMVGGSAVKQNVTLDAVFPAFILFAVLLVIGGMTYMFARETRGTSLDTI high_GC_Gram+ Propionibacterium_acnes_HL050PA1 Propionibacterium_acnes_HL050PA1 ADZL01000023 82209..83567 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1359 Propionibacterium_acnes_HL050PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL050PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_68.8xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL050PA1_P_acnesHL050PA1-1.0_Cont264.5,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4G354_PROAC.gb Propionicibacterium 301752631 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZL01000023 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1359 NA genomic_DNA NA HL050PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765100 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZL01000023.1 ATGTCCACCTCAACAACACCCAAACAATCAGCTCTAGACCTCATCGATTCGCGTCCCTTAACGCGCAATCAGAAGAATCTTGTTGCCCTAGCCGTCGTCGGAAATATCTCCGAGTTCTTTGATATCTTCCTCATTGGTTTCGTCGTATCCGTCCTGACTAAGCCATGGAATCTGACTGGCACTGAGGCGGGCGTCATTCTCGCCTGTTCCGGTCTGGGGACGGTCATTGGTGCCATCATGTGGGGACGTCTTGCCGACAAGATCGGACGCCGCTCCTCTTTCTTCTGGTGCGTGCTCCTGTTCGTCGTGTTCACTGTAGTATCAGTGTTCACCCCAGATCGTGGCTGGATTATGCTCGCCATTTTGCGTATTGGCGTGGGGATCGGAGTCGGCGGACTTAATATCACCTCGATTCCCTACGTCCAGGAGTTCGTGCCTGCTAAGCAGCGCGGTCTTCTTGCCGGCCTGGCGTCGGTATTCATCCCCCTCGGTCTGTTCTTGGGGTCGTTAGCACAAAATGCACTGGGCGATAATTGGCGTGCCCTCATCGCTTTGGGCGCCATTCCTGTTTTCCTGCTGGTGTGGATCCGTTTCGTGCCCGAATCACCACGGTTCCTACAGAGTCATGGGCGTGATAAGGAAGCACGCGAGGCCCTAGCCTGGGCACTCGATATGCCCGCTGACGACATTGGAGATTTGCCTGCCGTTGAACACGTCCAAGACGCTTCCTACTCACTTGTCTTTGGTAAATACCGCAAGAGTCTTCTCATCGTCAGTCTGGGATCATTCTGCTTCATTCTGGGCTCTTTTACGATTCAGTCGTGGGGCCAGACCCTGCTCAAGACCGGCTTTGGCAAGTCTCCCGAGCAAGTCGGGACCCTGTTCATGTTCGTTTCCCTGGCCGATCTCATCGGGCGCTTCCTATCAGCATGGCTGGCAGACCGCATTGGTCGGAGAGCCACCATGTTGTCGTTTGGCCTCATCGGTGCTGGCGGGACTCTCATCATCGCCCTTTCGGCCCGCCTGGGTTGGGGCTGGCAGATCTTCTTCGTCGGTGTCCTCATTGCGATGGCCTTCGCCGACGGCGCCTTCGGCATCCTCAATGCTTTCGGCGCCGAGCAATTCCCCAACGAAGCTCGCTCGACTGGTCTGGGACTGGGCTACGGCATCGGCGCCACCGCCAAGATCATCGGTCCGGCGCTTATGGGACTCATGGTGGGCGGATCTGCCGTCAAGCAGAATGTCACCCTGGACGCGGTATTTCCGGCATTCATCCTGTTCGCTGTGCTGCTAGTCATTGGCGGTATGACGTACATGTTTGCCCGCGAAACTCGTGGCACCTCGCTCGACACGATCTGA > 882 HMPREF9595_00128 KEGG:_cai:Caci_8679_8.1e-26_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFT32335.1 11 MFLTIWWSVWVYPAHAIPTWRRTAVSDAQATERTITSLIPARIDRLPWSTFHTMVIVGLGTAWILDGIEVQIVAANGFAKPLHMSTTEVTAAATFYLLGQVLGALFFGKLTDRIGRKKLFTLTLLVYLLGSGIAGLSFSTWFLYVCRFIAGSGIGGEYSAINSAIDELIPAQYRGRVDLSVNGTYWAGVMLGSVATIYLLDPTKVAEFWGWRIGFFIGPVLGIVVILIRKHIPESPRWMLTHGYGEQAEEIVAGIEQDVRESGHELEPVSDDQAITLEPEVRRQGRRNFSQRWVEFKESGAELVEVFLRRYWKRTVLGVTLMVTQSFLYNAIFFTYEIVLSQFYSVSKSDVGLYMIPFAVGNLLGPILLGRFFDTVGRRKMIFATYGIAALVLAISAILFQRDALTPTTHTIFWCVAFFFASAGASSAYLTVSEIFPLEVRGQAISYFFSIAQIAGAIAPFIFGNLIGDGSSRGPLVGGYFIGAGIMLTGGLVALFMGVDAEGKGLEAITDPLSRDRAKKSAARQAE high_GC_Gram+ Propionibacterium_acnes_HL005PA2 Propionibacterium_acnes_HL005PA2 ADZN01000003 33965..35548 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1584 Propionibacterium_acnes_HL005PA2_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL005PA2_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_68.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL005PA2_P_acnesHL005PA2-1.0_Cont42.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4GF38_PROAC.gb Propionicibacterium 301752715 Submitted_(06-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZN01000003 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1584 NA genomic_DNA NA HL005PA2 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765097 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZN01000003.1 TCACTCCGCTTGACGGGCGGCGGACTTCTTGGCACGGTCACGGCTGAGCGGATCAGTGATGGCCTCCAGACCCTTGCCCTCGGCGTCAACGCCCATGAACAAAGCGACGAGACCACCGGTAAGCATGATGCCGGCACCGATGAAGTAACCGCCGACAAGGGGGCCGCGCGAGGAACCGTCACCGATGAGGTTACCGAAGATGAATGGAGCGATAGCACCGGCAATCTGGGCGATCGAGAAAAAGTAGCTAATAGCCTGGCCACGAACTTCCAGCGGGAAAATCTCAGACACTGTCAGATAGGCCGAGGAAGCTCCGGCACTAGCAAAAAAGAAAGCGACGCACCAGAAGATAGTGTGGGTGGTCGGCGTCAGGGCGTCACGCTGGAACAGTATCGCACTGATAGCCAGCACTAGAGCAGCTATTCCGTAGGTGGCGAAAATCATCTTACGTCGACCAACAGTGTCGAAGAATCGTCCCAGTAGAATTGGGCCGAGTAGGTTTCCGACCGCGAATGGGATCATATATAAGCCGACGTCAGATTTAGACACTGAATAGAACTGCGACAGCACGATCTCATAGGTGAAAAAGATGGCGTTGTACAGGAAGGACTGGGTCACCATAAGGGTGACACCCAGCACAGTGCGCTTCCAATAGCGACGCAGGAACACCTCGACCAGCTCAGCACCAGACTCCTTAAACTCTACCCAACGCTGGGAGAAGTTGCGGCGACCTTGACGCCTCACCTCGGGTTCCAAGGTGATGGCCTGGTCGTCGCTAACCGGCTCAAGTTCATGCCCCGACTCCCGAACATCCTGCTCGATCCCGGCAACGATCTCTTCGGCCTGCTCACCGTAACCGTGCGTTAGCATCCACCGAGGCGACTCCGGAATGTGCTTACGAATAAGGATGACAACAATGCCGAGAACCGGACCAATAAAGAAGCCAATACGCCAGCCCCAAAACTCCGCGACCTTCGTCGGGTCAAGGAGGTAAATAGTGGCGACCGAACCGAGCATGACGCCAGCCCAGTAGGTGCCATTGACAGACAAGTCCACCCGACCGCGATACTGGGCTGGAATGAGCTCATCGATGGCCGAGTTGATCGCTGAATATTCACCACCAATACCAGATCCAGCAATAAACCGGCACACATAGAGGAACCACGTCGAGAAGGACAAACCTGCAATACCCGAACCAAGAAGGTAAACCAGGAGAGTCAGAGTGAAGAGTTTCTTTCGACCAATACGGTCGGTAAGTTTGCCGAAGAAGAGAGCACCAAGTACTTGGCCAAGCAGGTAGAAGGTTGCTGCCGCGGTAACCTCGGTGGTGGACATGTGCAGCGGTTTTGCAAAGCCATTTGCTGCGACGATCTGCACCTCAATACCGTCGAGGATCCACGCTGTTCCTAGACCGACGATAACCATGGTGTGAAATGTCGACCACGGCAGCCGGTCGATACGGGCCGGTATCAGTGATGTGATCGTTCGCTCAGTGGCTTGGGCGTCTGACACAGCGGTCCTCCTCCATGTGGGGATGGCGTGAGCAGGGTATACCCACACACTCCACCAAATAGTGAGAAACAT > 883 HMPREF9595_02403 KEGG:_dfe:Dfer_2102_3.3e-41_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFT30184.1 11 MAANIPLTNTANLTPDTQLASAPISPESRRFLRHVTAATAFGGGLDGFDLGVISVVILHINHDLELTPAMEGLVGAASLLGIFIGAPLFGFLTDKFGRRRMFLVDIIAFIVIGVGQAFATGGVSLGILRFLLGMAIGAEYSIGAPMLSEFVPARERGSKLAFLELCWRIGFLIAVLLGYALLWSGVSWKVILATSVIPALIVLGLRIGLPESPRWLLRHGREAEAREIVEKHMGPKYFAAEQLSDESVDGKGYRKLFRKGQRRRTIFVCIFWTCIVTPYFAIFTYAPKVLESLNVKSQAGGTILSNTIGVVGAVVGLLAIDRIGRRRMLIGPFWMQTAVLLIVGLWTDAPPWVLVVGLALFALVNSYSDILTAVYPSEIFDTDIRSSGVGFGSAVSRIGAFLGTYLLPIGIGTIGVKWCMVIAAGLCVVGAVTGQTLAPETMNRPLTKTATGELSHA high_GC_Gram+ Propionibacterium_acnes_HL005PA2 Propionibacterium_acnes_HL005PA2 ADZN01000031 41990..43363 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1374 Propionibacterium_acnes_HL005PA2_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL005PA2_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_68.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL005PA2_P_acnesHL005PA2-1.0_Cont376.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4GLH2_PROAC.gb Propionicibacterium 301752687 Submitted_(06-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZN01000031 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1374 NA genomic_DNA NA HL005PA2 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765097 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZN01000031.1 TCAGGCATGTGACAACTCTCCGGTTGCCGTTTTCGTCAGGGGCCGGTTCATGGTCTCAGGTGCCAGCGTCTGGCCGGTCACAGCGCCAACGACGCATAGACCTGCCGCGATGACCATGCACCACTTGACCCCGATTGTCCCGATGCCAATGGGCAGCAGGTAGGTGCCAAGGAAGGCACCAATGCGGCTGACTGCCGACCCGAACCCTACGCCACTGGATCGAATGTCGGTGTCGAAGATTTCAGAAGGGTACACCGCAGTAAGAATGTCGCTGTAGGAGTTGACCAAGGCGAAAAGAGCCAAGCCCACCACCAGCACCCACGGCGGCGCGTCGGTCCACAGCCCGACAATCAACAAGACTGCGGTCTGCATCCAGAACGGCCCGATGAGCATACGTCGGCGGCCGATGCGATCGATCGCCAGCAGACCGACGACCGCGCCAACGACGCCAATGGTATTGGAGAGGATCGTGCCGCCGGCTTGAGACTTCACGTTGAGGGATTCCAGCACTTTCGGAGCGTAGGTGAAGATCGCGAAATACGGGGTGACGATGCACGTCCAGAAAATACAGACGAAGATCGTGCGCCGCCGTTGACCCTTGCGGAACAGCTTGCGGTAGCCTTTCCCGTCCACCGACTCGTCGCTGAGCTGTTCGGCGGCGAAGTATTTCGGACCCATGTGCTTTTCGACGATCTCACGTGCTTCGGCCTCACGGCCGTGACGCAGCAACCAGCGCGGGGATTCTGGAAGACCGATTCGCAGCCCGAGCACAATGAGGGCTGGGATTACTGAAGTGGCCAAGATGACTTTCCACGACACTCCAGACCACAGCAGCGCATACCCCAATAGGACAGCGATAAGGAAGCCGATGCGCCAGCATAGTTCGAGGAAGGCCAGCTTCGATCCACGCTCCCGGGCCGGAACAAACTCTGAAAGCATCGGTGCTCCGATCGAGTATTCGGCTCCGATGGCCATCCCTAAAAGGAATCTGAGGATCCCTAGGGAGACTCCACCCGTCGCGAAAGCCTGCCCGACGCCGATAACGATGAAAGCAATAATGTCGACGAGGAACATCCTGCGGCGTCCGAACTTATCGGTGAGGAAGCCGAAGAGTGGGGCACCAATGAAGATGCCCAGTAGGCTCGCGGCACCGACGAGCCCCTCCATAGCGGGGGTGAGCTCGAGGTCGTGATTGATGTGCAAGATGACCACGCTAATGACGCCCAGGTCGAAGCCGTCGAGCCCGCCACCGAAAGCGGTGGCGGCTGTGACATGGCGCAGGAAACGTCTGGATTCGGGGGAGATTGGTGCTGACGCCAATTGCGTGTCGGGCGTCAAATTGGCGGTGTTCGTAAGCGGGATGTTGGCGGCCAT > 884 HMPREF9614_00363 KEGG:_gdj:Gdia_1773_2.6e-15_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFT05859.1 11 MSNVEAIAARKSWRDELTGTQWKSFWAAWIGYLLDGFDFVMITLVLTEIGRTFHVGPAATATLVSAAFIARWFGGLLLGAIGDRIGRKEAMVISILLYAGGSVVCAIAPAFWVIFVARVCIGMGMAGEYGSSATYVIESWPVRLRNKASGFLISGFSLGAGVTAQVYALIEYLTRGTSAEPHTWRILFALGIIPIALALWLRRALPEAADFVKMREEEAARAAVGETVKKTDMFTMLFARNPKRSIINIVLALTTFGCLIVIYLFKSGVPGLVLALLWVVVAAVMVSFMVQFEGPRWPTGVAVMITVFVAFLYSWPLQALLPTYYRQTLGLASDTASNLVTATSFGAAAGCIMAGFIGDRFGTRKAYWVSLLISEFLVLPVFLVSRGMVHSSVIWVVLLGVFIFVQQMFGQGISGLLPKFISNYFPVEKRAAGLGFSYNVGALGGAIAPVLGIALAGDPATGVGGVLPSSWGLGWTLFILSFVFTAVIIVLIAINFPLRMQKLLRPDHVRPADRMDHVDEELAVSRNPDTIVAS high_GC_Gram+ Propionibacterium_acnes_HL002PA2 Propionibacterium_acnes_HL002PA2 ADZS01000009 10674..12278 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1605 Propionibacterium_acnes_HL002PA2_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL002PA2_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_65.2xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL002PA2_P_acnesHL002PA2-1.0_Cont7.2,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4H2W5_PROAC.gb Propionicibacterium 301517861 Submitted_(06-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZS01000009 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1605 NA genomic_DNA NA HL002PA2 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765116 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZS01000009.1 TCACGAGGCGACGATAGTGTCAGGGTTCCGGGAAACAGCAAGCTCTTCATCGACGTGATCCATCCGGTCAGCGGGACGCACGTGGTCGGGGCGCAACAGCTTCTGCATCCGGAGCGGGAAATTGATGGCGATAAGAACGATGATCACCGCGGTGAATACGAAGGACAAGATGAACAGGGTCCATCCGAGGCCCCAGCTGGAGGGCAGCACACCGCCAACACCGGTAGCTGGATCACCTGCCAGGGCAATGCCGAGGACCGGGGCGATAGCCCCACCAAGAGCTCCGACGTTATAAGAGAAACCCAAACCAGCAGCGCGCTTCTCGACCGGAAAGTAGTTCGAAATGAACTTCGGTAGCAGACCAGAGATACCTTGTCCGAACATCTGCTGGACAAAGATGAAAACTCCAAGAAGCACGACCCATATCACCGAGGAATGCACCATGCCTCGGCTGACGAGGAAGACCGGCAGGACGAGGAACTCCGAGATGAGCAGGGAGACCCAATAGGCCTTGCGGGTTCCGAATCTGTCACCGATAAATCCGGCCATGATGCAGCCCGCTGCCGCGCCAAAAGAAGTGGCGGTCACGAGATTGGAAGCGGTGTCGCTCGCCAGGCCCAGGGTTTGGCGATAGTAGGTAGGCAACAGAGCCTGCAAAGGCCAGGAGTAGAGGAAGGCGACAAACACCGTGATCATAACGGCCACACCTGTCGGCCAACGCGGTCCCTCGAACTGGACCATGAAGCTCACCATGACGGCCGCGACAACGACCCACAGCAATGCCAACACGAGCCCCGGGACGCCGCTCTTGAACAGGTAAATGACGATTAGGCATCCGAAAGTTGTGAGGGCCAGAACAATGTTAATGATGCTTCGCTTCGGGTTACGTGCGAAGAGCATGGTGAACATGTCAGTCTTCTTGACAGTCTCGCCGACAGCGGCGCGAGCGGCCTCCTCCTCGCGCATTTTTACAAAGTCGGCGGCCTCAGGAAGGGCACGACGCAGCCACAGGGCCAAGGCGATCGGAATAATGCCAAGCGCGAAGAGTATTCGCCAGGTATGAGGCTCAGCGGAGGTACCACGGGTAAGGTACTCGATGAGGGCATACACCTGAGCCGTCACACCGGCGCCAAGGGAAAATCCGGAAATAAGGAACCCGGAGGCCTTATTCCGCAGACGCACTGGCCAGGACTCAATGACGTAGGTGGCTGAAGAGCCGTACTCACCGGCCATACCCATGCCGATGCAGACACGGGCGACGAAGATAACCCAGAAAGCCGGGGCAATGGCACAGACGACCGATCCACCCGCATAAAGCAGAATTGAGATGACCATAGCCTCCTTGCGGCCGATCCGGTCACCGATAGCTCCCAGCAGCAGTCCGCCGAACCATCGCGCAATAAAAGCAGCGGACACCAAGGTCGCAGTCGCCGCTGGTCCGACGTGAAAGGTCCTGCCGATCTCGGTGAGGACCAGCGTGATCATGACGAAGTCGAATCCGTCCAGCAGATAACCGATCCATGCTGCCCAGAAGGATTTCCACTGCGTGCCAGTCAACTCGTCACGCCATGATTTCCTGGCTGCTATGGCCTCGACGTTGCTCAT > 885 HMPREF9608_00209 KEGG:_rcm:A1E_04550_2.4e-12_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS96145.1 11 MYTYTTFAAYFEDQFFSPDDPHKSIYIYAIFWATFIMRPFGSWFFGRWADRHGRRSALIMAVTIMAVGSLVISVLPTRGTIGVGAPILLLICRIVQGFATGGEYGTSATYMSEASTKGHRGFFSSFQYFTLVGGLVTAQAVLLLLSSLMSEATIHAWGWRIPFFIGGVAALIVFFMQKTMDESLSTEHLKSVRSGEDSSSGSLKELFGNHLGNFLLAFTIASGGTLCFYVYTVNAPNIVHSTFSSTPMAATAVNLIALFILMLGQPLGGLIGDRIGRKPVLLFFAAGGVVYTWVLVTCLSHARKPVTAFLMLLMGYIFLTGYTSISAVVKSDLFPTDVRALGVGMAHGFANSLFGGTAPLIYVWAKQGDAIPAFIGYVTALSAVTLLTILFGLTTRTASHLDAPTKGGHD high_GC_Gram+ Propionibacterium_acnes_HL067PA1 Propionibacterium_acnes_HL067PA1 ADZT01000006 8347..9579 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1233 Propionibacterium_acnes_HL067PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL067PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_65.9xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL067PA1_P_acnesHL067PA1-1.0_Cont5.2,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4H9R2_PROAC.gb Propionicibacterium 301509632 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZT01000006 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1233 NA genomic_DNA NA HL067PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765110 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZT01000006.1 GTGTACACGTACACGACGTTCGCAGCCTATTTCGAGGACCAGTTCTTCTCGCCTGACGACCCGCACAAGAGCATCTACATCTACGCGATTTTCTGGGCGACCTTCATCATGAGGCCGTTCGGATCGTGGTTCTTCGGTCGCTGGGCCGACCGTCACGGACGTCGGTCCGCCCTCATCATGGCAGTGACAATCATGGCCGTCGGCTCCCTCGTCATCTCCGTGTTGCCCACCCGAGGCACCATCGGAGTGGGGGCCCCGATCCTGTTGCTCATCTGTCGTATCGTGCAAGGATTCGCCACAGGAGGTGAGTACGGCACCTCGGCCACCTACATGTCAGAAGCCTCCACCAAGGGACACCGCGGTTTCTTCTCCTCGTTCCAGTACTTCACCCTCGTGGGTGGTTTAGTGACAGCCCAGGCCGTCCTACTCCTGCTGTCCTCCCTCATGAGTGAGGCCACGATCCATGCCTGGGGATGGCGCATCCCATTCTTCATCGGTGGCGTCGCAGCGCTCATCGTTTTCTTCATGCAGAAGACGATGGATGAATCGCTGAGTACCGAACATCTTAAATCCGTGCGGTCGGGTGAGGACAGCTCGTCAGGAAGTCTGAAAGAGCTCTTTGGAAACCATCTCGGTAACTTCCTCCTGGCTTTTACCATCGCCAGCGGCGGTACCCTGTGCTTCTACGTCTACACCGTCAATGCACCGAATATCGTCCATTCGACTTTCAGCAGCACTCCGATGGCGGCAACCGCGGTCAACCTCATCGCCCTATTCATCCTCATGCTCGGGCAACCGCTGGGAGGCCTCATCGGTGACCGGATCGGACGCAAACCGGTGTTGCTCTTCTTTGCCGCCGGTGGAGTCGTTTATACCTGGGTTCTCGTGACCTGTCTGTCGCATGCCCGCAAGCCCGTAACTGCATTCCTCATGCTGCTCATGGGCTATATCTTCCTTACCGGATATACCTCGATCTCCGCAGTTGTGAAGTCCGACCTTTTCCCAACCGATGTCAGGGCGCTGGGTGTTGGGATGGCCCATGGTTTCGCGAATTCCCTGTTCGGCGGCACGGCTCCACTCATTTACGTGTGGGCGAAACAGGGTGACGCGATCCCCGCCTTCATCGGGTATGTGACGGCGCTGTCCGCGGTCACCTTACTTACGATCCTCTTCGGGCTGACCACACGGACTGCGTCACACCTGGATGCGCCGACGAAGGGTGGGCACGACTAA > 886 HMPREF9607_00351 Psort_location:_Cytoplasmic,_score:_7.50 conserved_domain_protein EFS93431.1 11 MPKRNLRIASGVPAHSEGLPNANNNESNDVDEEHPAPPELIGEKAEEWGTDEDTQQARCTNNPLHSGGEPEAVIDVQNDDADYLVHQMCTRPLVLALVGE high_GC_Gram+ Propionibacterium_acnes_HL044PA1 Propionibacterium_acnes_HL044PA1 ADZU01000010 35789..37138 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 1348:>1350 Propionibacterium_acnes_HL044PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL044PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL044PA1_P_acnesHL044PA1-1.0_Cont10.2,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4HHI1_PROAC.gb Propionicibacterium 301509904 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZU01000010 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1350 NA genomic_DNA NA HL044PA1 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765109 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZU01000010.1 CTATTCGGGACAGTACAACATCGTGCTGGGACGAATACTTGAGCAGTTGGGGTTCGAGGTTCGCCCAGTCCACGCAGCACGGGTCCGTCTGGAGCACCACCCGTGGTACCACACCGGGCACAGCTGGCTACGGGTGACATACGAGGGTAAGGAGCTCGACGTTTGCGCTTCGCGACTAAGTAACACCGCTGGCAACGTCGCCTTTGTCCCTGTGACCGAGGTACTCGACCGCACCAGGCTCAACAGCATCGATACCACCCTTGCCCTGGGCCCGATCGTCGTTGCAAGTGTCTGGAGATCCTGGCTGGCGGGGTCGGATATCCAGAGCTGGATGTACCGGCCATTCGGACTGTCTGCCTGAGCGTTGAGCCCGAGGTCAAGCCTGCACAACTCTCCGGTTGCCGTTTTCGTCAGGGGCCGATTCATGGTCTCAGGCGCCATCATCTGGCCAGTCACAGCACCAACGACGCATAGACCTGCCGCAATCACCATGCACCACTTGATCCCAATTGTCCCGATGCCAATGGGCAGCAGGTAGGTACCGAGGAAGGCGCCGATGCGGCTGACGGCCGACCCGAACCCCACACCACTGGAGCGGATGTCGGTGTCGAAGATCTCTGAGGGGTACACCGCAGTGAGAATGTCGCTGTAGGAGTTAACCAAGGCAAAGAGCGCCAAACCCGCCACCAGCACCCACGATGGCGCAGTGGTCCACAACCCGACAACCAGGAGGACGACGACATGCACCCAGAACGGCCCGATGAGCATGCGTCGGCGGCCGATGCGATCGATCGCCAGTAAACCGGCGATCGCGCCAACGACGCCAATGGTGATGGAGAGGATGGTGCCGCCAGCCTGAGACTTGACGTTGAGGGATTCCAATACCTTGGGGGCGTAGGTAAAGATCGCGAAATATGGGGTGACGATGCACGTCCAGAACATACAAACGAAGACCGTGCGCCGCCGTTGACCCTTGCGGAACAGCTTGCGATAACCTTCTCCGTCCACCGACTCCTCGCTGAGCTTTTCGGAGGCGAAGTACCCCGGACCCATGTGCTTTTCAACGATCTCACGTGCTTCGGCTTCGTCGCCGTGACGCAGCAACCAGCGCGGGGACTCCGGAAGTCCAATTCGCAGCCCAAGCACGATGAGGGCTGGGAGTACTGAAGTGGCCAAGATGACCTTCCACGACACCCCAAACCACAGCAGCGCATACCCCAGGAGGACAGCGATGAGGAAGCCGACGCGCCAGCACAGCTCGAGGAAGGCCAGCTTCGATCCGCGTTCCCGGGCCGGAACGAACTTTGAAAGCATCGGTGCCCCGATTGAGTACTCGGCGCCGACGGCCAT > 887 HMPREF9607_00517 KEGG:_rcm:A1E_04550_5.0e-18_tdk;_thymidylate_kinase;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS93304.1 11 MRQAIAGTIVGNLMEWYDVGVYGYLAVLIGRVFLPEAAPSVKSLFSLGVFAVTFVARPLGGIILGQLGDRLGRHRVLALTLTMMSASTFLIGILPDYSVIGAWAPILLIVLKLAQGFSTGGEYAGATTFITEYAPDRHRGFYASLLDLGSYLGFANGAAVVSSLQLTMSGAAMEGYVWRVPFLIALPLALIAIYFRLKIEDSPAYLQAQAGVANRNQNPTKGIAGLVRSYWREILTAFVLVAAANTLGYAVTSYMPTYLTTTLGYDTVHGNLLTLPVLVLMSLGIPVAGALSDRIGRRPVLFGGSVGAIFLAIPAFLLMMHGQLWLTLLGLFLLAVPVALYVSNLASALPALFPTSSRYGGMGMSYNLAAALFSGTAPFIMEALVTVTGDRLAPAYWIMGTSMAGFIAVRVMGESAGKPMPGAMPTVLTHEEAHHLVETQDENPDLDIEKVLRDAGELD high_GC_Gram+ Propionibacterium_acnes_HL044PA1 Propionibacterium_acnes_HL044PA1 ADZU01000011 98067..99446 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1380 Propionibacterium_acnes_HL044PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL044PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL044PA1_P_acnesHL044PA1-1.0_Cont11.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4HHZ6_PROAC.gb Propionicibacterium 301509903 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZU01000011 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1380 NA genomic_DNA NA HL044PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765109 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZU01000011.1 ATGCGCCAAGCCATTGCCGGGACCATCGTTGGCAATCTCATGGAGTGGTATGACGTCGGCGTTTATGGGTATCTGGCCGTGCTCATCGGCCGTGTCTTCCTTCCCGAGGCCGCACCATCCGTCAAGAGTCTCTTTTCACTCGGCGTGTTCGCAGTGACCTTCGTTGCGAGACCACTTGGTGGAATCATCTTGGGGCAGCTAGGCGACCGCTTAGGCCGTCACAGAGTGCTTGCCCTCACCCTCACCATGATGTCGGCCTCAACCTTCCTTATTGGCATTCTGCCCGACTATTCGGTCATCGGAGCATGGGCGCCCATTTTGCTCATCGTCCTTAAGCTCGCCCAGGGTTTCTCGACCGGCGGCGAGTACGCCGGGGCGACGACGTTCATCACCGAGTACGCTCCCGATAGGCATCGAGGGTTTTATGCCTCGCTGCTTGACCTCGGTTCCTACTTGGGATTTGCCAACGGTGCGGCCGTCGTGTCGTCGCTCCAGCTCACCATGTCGGGTGCGGCGATGGAGGGATATGTGTGGCGCGTACCATTTCTTATCGCCTTGCCCCTCGCGTTGATCGCCATCTATTTCCGCTTGAAGATTGAGGATTCACCAGCCTATTTGCAGGCCCAGGCCGGAGTCGCCAATCGCAATCAGAACCCGACCAAGGGGATCGCTGGCCTGGTACGCAGCTATTGGCGTGAAATCCTCACCGCCTTCGTCCTAGTCGCGGCCGCTAACACGCTCGGCTACGCCGTCACCTCATATATGCCCACTTACCTGACGACGACACTGGGCTACGACACCGTGCACGGAAACCTGCTAACCCTGCCGGTGCTCGTCCTTATGAGCTTGGGTATACCGGTTGCCGGAGCACTATCGGATCGGATCGGACGCAGGCCCGTGCTGTTCGGCGGATCGGTGGGTGCCATCTTCCTGGCCATTCCGGCATTTCTGCTCATGATGCACGGGCAGTTGTGGTTGACCCTGCTGGGTCTTTTCCTGCTCGCCGTGCCTGTCGCCCTGTACGTGTCGAACCTCGCATCCGCGCTGCCAGCACTGTTTCCCACGTCGTCGCGCTATGGCGGTATGGGAATGTCATACAACCTTGCGGCTGCGCTGTTCTCCGGTACGGCACCATTCATCATGGAAGCTTTGGTCACCGTTACCGGGGACCGGCTTGCTCCAGCGTATTGGATTATGGGAACGTCGATGGCCGGATTCATCGCGGTGCGCGTCATGGGGGAGAGTGCCGGCAAGCCGATGCCCGGTGCAATGCCCACCGTTCTCACTCACGAGGAAGCCCATCATCTCGTGGAGACCCAGGATGAGAACCCCGACCTGGACATCGAGAAGGTGCTTAGAGACGCCGGCGAACTCGACTGA > 888 HMPREF9607_00558 KEGG:_cai:Caci_8679_2.2e-15_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS93345.1 11 MASSDDIITIKEMGDKRPWWQYLDATKWKLFIAALIGVTLDGYDFVLITLALPEIKATFDLTLVQSAALVSAAFITRWLGGLILGGVGDRFGRKPAMIIATVLFAIGSLLMGFSPNFMFLFVMRMVVGFAMAGEYGSSATYVIESWHPRIRGKASSFLLSGYAIGAILAVQVDKYLVPWANSWHTGWGWRALFITGVVPIAVALYMRRRLPEASDWETAKSRNRRESSESRDAFQVLFSGRRMSLNITLVIATMAGLLAIFALNILTFWGVFAVAATCGAIFVCLIVQFDPRRWVIGIGIMIVILSAFMYGWPILGLLPTYLKGAGYAASTVANMLTVAQFGNMIGYFVAGFMGDLIGMRKWYFTSILIAQVIVFPLFFAGIKSAWLIGLLLFFNQLFGQGISGLAPRWVSSYFPVEQRAAGVGFIYNVGALGGAIGPVMRASLAKGYGLGSALGVLSVGFGLIVVLGVGLNLPRKLQALINPKVVRPEDGDDRYINSEDLSSEFASGGC high_GC_Gram+ Propionibacterium_acnes_HL044PA1 Propionibacterium_acnes_HL044PA1 ADZU01000011 135786..137318 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1533 Propionibacterium_acnes_HL044PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL044PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL044PA1_P_acnesHL044PA1-1.0_Cont11.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4HI37_PROAC.gb Propionicibacterium 301509903 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZU01000011 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1533 NA genomic_DNA NA HL044PA1 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765109 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZU01000011.1 TCAGCACCCGCCGGACGCGAACTCGCTCGAAAGGTCCTCGCTGTTGATATACCGGTCGTCCCCGTCCTCGGGACGGACGACCTTCGGATTGATGAGGGCTTGGAGCTTGCGTGGAAGATTAAGCCCGACGCCAAGGACGACTATCAGGCCGAAGCCTACGGACAACACCCCCAGCGCCGATCCCAGGCCGTAGCCCTTGGCCAGTGAGGCGCGCATGACCGGTCCGATTGCGCCGCCGAGAGCTCCGACGTTGTAGATGAACCCCACTCCCGCAGCTCGCTGCTCGACAGGGAAGTAGCTCGACACCCAGCGAGGGGCCAGTCCTGAAATGCCTTGGCCGAACAACTGGTTGAAAAACAGCAGAAGCCCGATGAGCCACGCTGACTTGATTCCCGCAAAGAACAGGGGGAACACGATGACTTGTGCGATGAGAATGCTCGTGAAGTACCACTTGCGCATTCCTATCAAGTCTCCCATGAAGCCTGCGACGAAGTAACCGATCATGTTGCCGAATTGTGCGACCGTCAACATATTTGCGACGGTGGACGCTGCATACCCGGCACCCTTGAGGTACGTCGGTAAGAGTCCAAGGATGGGCCATCCGTACATGAAGGCAGAGAGAATGACGATCATGATTCCGATGCCGATGACCCAGCGTCGAGGATCGAATTGCACGATGAGACACACGAAGATGGCACCACAGGTTGCGGCCACGGCGAAGACACCCCAGAAGGTGAGAATGTTGAGAGCGAAGATGGCCAGTAGGCCTGCCATCGTCGCGATGACGAGCGTGATATTCAGGGACATGCGCCTTCCGCTGAACAGCACCTGGAACGCGTCACGCGATTCAGACGATTCTCTCCGGTTGCGTGACTTCGCCGTTTCCCAGTCGCTAGCTTCGGGGAGGCGACGTCGCATGTACAGTGCCACTGCGATGGGTACGACCCCGGTGATGAACAGGGCCCGCCAGCCCCATCCGGTATGCCAACTGTTGGCCCATGGGACTAAGTATTTGTCTACCTGAACGGCCAAAATGGCACCTATCGCATAGCCGGATAACAGAAACGATGATGCCTTGCCGCGGATTCGGGGGTGCCACGATTCGATGACATATGTTGCCGATGACCCATATTCTCCGGCCATGGCGAAACCGACGACCATACGCATGACGAACAGGAACATGAAGTTCGGCGAGAATCCCATGAGGAGCGAGCCGATTGCGAACAGCACGGTCGCGATGATCATGGCCGGCTTGCGTCCGAACCTGTCGCCAACACCACCCAGGATCAGTCCGCCCAACCACCGGGTGATGAAGGCAGCTGACACCAGCGCGGCGCTTTGCACTAAGGTAAGATCGAAGGTTGCCTTGATCTCTGGAAGCGCCAGGGTGATGAGCACGAAGTCGTAGCCGTCAAGGGTGACGCCGATGAGGGCGGCAATGAACAGCTTCCACTTGGTGGCGTCCAAGTACTGCCACCATGGCCTCTTGTCACCCATTTCTTTGATGGTGATGATGTCATCCGAGCTGGCCAT > 889 HMPREF9607_01975 KEGG:_dfe:Dfer_1599_5.5e-32_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFS91814.1 11 MSTSTTAKQSALDLIDSRPLTRNQKNLVALAIVGNISEFFDIFLIGFVVSVLTKPWNLTGTEAGVILACSGLGTVIGAIMWGRFADKIGRRSSFFWCVLMFVVFTVVSVLTPDRGWIMLAILRIGVGIGVGGLNITSIPYVQEFVPAKQRGLLAGLASVFIPLGLFLGSLAQNALGDNWRALIALGAIPVFLLVWIRFVPESPRFLQSHGREKEAREALAWALEMPADDIGDLPAVEHVQDASYSLVFGKYRKSLLIVSLGSFCFILGSFTIQSWGQTLLKTGFGKSPEQVGILFMFVSLADLVGRFLSAWLADRIGRRSTMLSFGLIGAAGTLIVALSAHLGWGWQIFFVGVLVAMAFADGAFGILNAFGAEQFPNEARSTGLGLGYGIGATAKVIGPALMGLMVGGSAVKQNVTLDAVFPAFILFTVLLVIGGVTYMFARETRGTSLDTI high_GC_Gram+ Propionibacterium_acnes_HL044PA1 Propionibacterium_acnes_HL044PA1 ADZU01000033 54750..56108 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1359 Propionibacterium_acnes_HL044PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL044PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_66.7xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL044PA1_P_acnesHL044PA1-1.0_Cont24.2,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4HM31_PROAC.gb Propionicibacterium 301509881 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZU01000033 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1359 NA genomic_DNA NA HL044PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765109 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZU01000033.1 ATGTCCACCTCAACAACAGCCAAACAATCAGCCTTAGACCTCATTGATTCGCGTCCGTTGACGCGTAATCAGAAGAATCTTGTTGCGTTAGCCATTGTTGGAAATATCTCCGAGTTCTTCGACATTTTCCTCATTGGTTTCGTTGTATCCGTCCTTACTAAGCCATGGAACCTGACTGGCACCGAAGCAGGCGTCATCCTCGCCTGTTCCGGTCTGGGGACGGTCATCGGTGCCATCATGTGGGGGCGCTTCGCCGACAAGATTGGACGCCGCTCCTCCTTCTTCTGGTGCGTGCTCATGTTCGTTGTGTTCACCGTAGTGTCGGTGCTTACCCCGGACCGTGGCTGGATTATGCTCGCCATTTTGCGTATTGGTGTGGGGATCGGCGTCGGTGGGCTCAACATCACCTCGATTCCCTACGTTCAGGAATTCGTACCTGCGAAGCAGCGCGGTCTTCTCGCCGGTCTGGCGTCGGTATTTATCCCCCTCGGTCTGTTCCTGGGATCCCTCGCTCAAAATGCCTTGGGCGATAATTGGCGTGCCCTCATCGCCTTAGGCGCTATTCCCGTCTTTCTGCTGGTGTGGATCCGTTTCGTTCCCGAATCGCCACGGTTCTTGCAGAGTCATGGACGCGAGAAGGAAGCCCGTGAAGCCCTGGCTTGGGCACTCGAGATGCCCGCTGACGATATTGGAGATCTGCCCGCCGTCGAGCACGTCCAAGACGCCTCCTACTCGCTCGTCTTTGGTAAGTACCGCAAGAGCCTTCTCATCGTCAGTCTGGGATCGTTCTGTTTCATTCTGGGTTCCTTCACGATCCAGTCGTGGGGCCAGACGCTGCTCAAAACCGGCTTCGGAAAGTCTCCCGAACAAGTTGGGATCCTATTCATGTTCGTTTCTCTGGCGGATCTCGTAGGCCGCTTTCTGTCAGCATGGCTGGCTGACCGCATCGGCCGGAGGAGCACCATGTTGTCGTTCGGTCTCATCGGTGCAGCAGGAACCCTCATTGTCGCGCTTTCGGCCCACCTGGGTTGGGGCTGGCAGATCTTCTTCGTCGGTGTCCTCGTTGCGATGGCCTTCGCCGACGGTGCCTTCGGTATTCTCAATGCGTTCGGTGCCGAGCAATTCCCCAACGAGGCTCGCTCGACCGGCCTGGGGTTGGGCTATGGGATCGGTGCCACCGCTAAGGTCATCGGTCCGGCCCTCATGGGACTCATGGTGGGTGGATCTGCCGTCAAGCAGAATGTCACCTTGGATGCGGTGTTCCCGGCGTTCATCTTGTTCACTGTGCTGCTGGTTATTGGCGGTGTGACGTACATGTTCGCGCGTGAAACTCGCGGCACCTCGCTCGACACGATCTGA > 890 HMPREF9597_00278 Psort_location:_CytoplasmicMembrane,_score:_10.00 hypothetical_protein EFS80307.1 11 MLLMGYIFLTGYTSISAVVKSDLFPTDVRALGVGMAHGFANSLFGGTAPLIYVWAKQGDAIPAFIGYVTALSAVTLLTILFGLTTRTASHLDAPTKGGHD high_GC_Gram+ Propionibacterium_acnes_HL005PA4 Propionibacterium_acnes_HL005PA4 ADZW01000006 8881..9183 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:303 Propionibacterium_acnes_HL005PA4_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL005PA4_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_74.9xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL005PA4_P_acnesHL005PA4-1.0_Cont4.2,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4HXU0_PROAC.gb Propionicibacterium 301509667 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZW01000006 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 303 NA genomic_DNA NA HL005PA4 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765099 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZW01000006.1 TTAGTCGTGCCCACCCTTCGTCGGCGCATCCAGGTGTGACGCAGTCCGTGTGGTCAGCCCGAAGAGGATCGTAAGTAAGGTGACCGCGGACAGCGCCGTCACATACCCGATGAAGGCGGGGATCGCGTCACCCTGTTTCGCCCACACGTAAATGAGTGGAGCCGTGCCGCCGAACAGGGAATTCGCGAAACCATGGGCCATCCCAACACCCAGCGCCCTGACATCGGTTGGGAAAAGGTCGGACTTCACAACTGCGGAGATCGAGGTATATCCGGTAAGGAAGATATAGCCCATGAGCAGCAT > 891 HMPREF9597_00405 NA transporter,_major_facilitator_family_protein EFS80433.1 11 MSNVEAIAARKSWRDELTGTQWKSFWAAWIGYLLDGFDFVMITLVLTEIGRTFHVGPAATATLVSAAFIARWFGGLLLGAIGDRIGRKEAMVISILLYAGGSVVCAIAPAFWVIFVARVCIGMGMAGEYGSSATYVIESWPVRLRNKASGFLISGFSLGAGVTAQVYALIEYLTRGTSAEPHTWRILFALGIIPIALALWLRRALPEAADFVKMREEEAARAAVGETVKKTDMFTMLFARNPKRSIINIVLALTTFGCLIVIYLFKSGVPGLVLALLWVVVAAVMVSFMVQFEGPRWPTGVAVMITVFVAFLYSWPLQALLPTYYRQTLGLASDTASNLVTATSFGAAAGCIMAGFIGDRFGTRKAYWVSLLISEFLVLPVFLVSRGMVHSSVIWVVLLGVFIFVQQMFGQGISGLLPKFISNYFPVEKRAAGLGFSYNVGALGGAIAPVLGIALAGDPATGVGGVLPSSWGLGWTLFILSFVFTAVIIVLIAINFPLRMQKLLRPDHVRPADRMDHVDEELAVSRNPDTIVAS high_GC_Gram+ Propionibacterium_acnes_HL005PA4 Propionibacterium_acnes_HL005PA4 ADZW01000006 110154..111758 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1605 Propionibacterium_acnes_HL005PA4_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL005PA4_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_74.9xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 13-DEC-2010 Propionibacterium_acnes_HL005PA4_P_acnesHL005PA4-1.0_Cont4.2,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E4HY66_PROAC.gb Propionicibacterium 301509667 Submitted_(14-JUL-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZW01000006 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1605 NA genomic_DNA NA HL005PA4 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765099 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZW01000006.1 ATGAGCAACGTCGAGGCCATAGCAGCCAGGAAATCATGGCGTGACGAGTTGACTGGCACGCAGTGGAAATCCTTCTGGGCAGCATGGATCGGTTATCTGCTGGACGGATTCGACTTCGTCATGATCACGCTGGTCCTCACCGAGATCGGCAGGACCTTTCACGTCGGACCAGCGGCGACTGCGACCCTGGTGTCCGCTGCTTTTATTGCGCGATGGTTCGGCGGACTGCTGCTGGGAGCTATCGGTGACCGGATCGGCCGCAAGGAGGCTATGGTCATCTCAATTCTGCTTTATGCGGGTGGATCGGTCGTCTGTGCCATTGCCCCGGCTTTCTGGGTTATCTTCGTCGCCCGTGTCTGCATCGGCATGGGTATGGCCGGTGAGTACGGCTCTTCAGCCACCTACGTCATTGAGTCCTGGCCAGTGCGTCTGCGGAATAAGGCCTCCGGGTTCCTTATTTCCGGATTTTCCCTTGGCGCCGGTGTGACGGCTCAGGTGTATGCCCTCATCGAGTACCTTACCCGTGGTACCTCCGCTGAGCCTCATACCTGGCGAATACTCTTCGCGCTTGGCATTATTCCGATCGCCTTGGCCCTGTGGCTGCGTCGTGCCCTTCCTGAGGCCGCCGACTTTGTAAAAATGCGCGAGGAGGAGGCCGCTCGCGCCGCTGTCGGCGAGACTGTCAAGAAGACTGACATGTTCACCATGCTCTTCGCACGTAACCCGAAGCGAAGCATCATTAACATTGTTCTGGCCCTCACAACTTTCGGATGCCTAATCGTCATTTACCTGTTCAAGAGCGGCGTCCCGGGGCTCGTGTTGGCATTGCTGTGGGTCGTTGTCGCGGCCGTCATGGTGAGCTTCATGGTCCAGTTCGAGGGACCGCGTTGGCCGACAGGTGTGGCCGTTATGATCACGGTGTTTGTCGCCTTCCTCTACTCCTGGCCTTTGCAGGCTCTGTTGCCTACCTACTATCGCCAAACCCTGGGCCTGGCGAGCGACACCGCTTCCAATCTCGTGACCGCCACTTCTTTTGGCGCGGCAGCGGGCTGCATCATGGCCGGATTTATCGGTGACAGATTCGGAACCCGCAAGGCCTATTGGGTCTCCCTGCTCATCTCGGAGTTCCTCGTCCTGCCGGTCTTCCTCGTCAGCCGAGGCATGGTGCATTCCTCGGTGATATGGGTCGTGCTTCTTGGAGTTTTCATCTTTGTCCAGCAGATGTTCGGACAAGGTATCTCTGGTCTGCTACCGAAGTTCATTTCGAACTACTTTCCGGTCGAGAAGCGCGCTGCTGGTTTGGGTTTCTCTTATAACGTCGGAGCTCTTGGTGGGGCTATCGCCCCGGTCCTCGGCATTGCCCTGGCAGGTGATCCAGCTACCGGTGTTGGCGGTGTGCTGCCCTCCAGCTGGGGCCTCGGATGGACCCTGTTCATCTTGTCCTTCGTATTCACCGCGGTGATCATCGTTCTTATCGCCATCAATTTCCCGCTCCGGATGCAGAAGCTGTTGCGCCCCGACCACGTGCGTCCCGCTGACCGGATGGATCACGTCGATGAAGAGCTTGCTGTTTCCCGGAACCCTGACACTATCGTCGCCTCGTGA > 892 HMPREF9602_02089 KEGG:_dfe:Dfer_1599_7.1e-32_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFT80465.1 11 MSTSTTPKQSALDLIDSRPLTRNQKNLVALAVVGNISEFFDIFLIGFVVSVLTKPWNLTGTEAGVILACSGLGTVIGAIMWGRLADKIGRRSSFFWCVLLFVVFTVVSVFTPDRGWIMLAILRIGVGIGVGGLNITSIPYVQEFVPAKQRGLLAGLASVFIPLGLFLGSLAQNALGDNWRALIALGAIPVFLLVWIRFVPESPRFLQSHGRDKEAREALAWALDMPADDIGDLPAVEHVQDASYSLVFGKYRKSLLIVSLGSFCFILGSFTIQSWGQTLLKTGFGKSPEQVGTLFMFVSLADLIGRFLSAWLADRIGRRATMLSFGLIGAGGTLIIALSARLGWGWQIFFVGVLIAMAFADGAFGILNAFGAEQFPNEARSTGLGLGYGIGATAKIIGPALMGLMVGGSAVKQNVTLDAVFPAFILFAVLLVIGGMTYMFARETRGTSLDTI high_GC_Gram+ Propionibacterium_acnes_HL030PA2 Propionibacterium_acnes_HL030PA2 ADXZ01000057 184487..185845 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1359 Propionibacterium_acnes_HL030PA2_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL030PA2_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_67.4xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 15-DEC-2010 Propionibacterium_acnes_HL030PA2_P_acnesHL030PA2-1.0_Cont247.5,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E6C835_PROAC.gb Propionicibacterium 302316013 Submitted_(23-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADXZ01000057 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1359 NA genomic_DNA NA HL030PA2 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765104 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADXZ01000057.1 TCAGATCGTGTCGAGCGAGGTGCCACGAGTTTCGCGGGCAAACATGTACGTCATACCGCCAATGACTAGCAGCACAGCGAACAGGATGAATGCCGGAAATACCGCGTCCAGGGTGACATTCTGCTTGACGGCAGATCCGCCCACCATGAGTCCCATAAGCGCCGGACCGATGATCTTGGCGGTGGCGCCGATGCCGTAGCCCAGTCCCAGACCAGTCGAGCGAGCTTCGTTGGGGAATTGCTCGGCGCCGAAAGCATTGAGGATGCCGAAGGCGCCGTCGGCGAAGGCCATCGCAATGAGGACACCGACGAAGAAGATCTGCCAGCCCCAACCCAGGCGGGCCGAAAGGGCGATGATGAGAGTCCCGCCAGCACCGATGAGGCCAAACGACAACATGGTGGCTCTCCGACCAATGCGGTCTGCCAGCCATGCTGATAGGAAGCGCCCGATGAGATCGGCCAGGGAAACGAACATGAACAGGGTCCCGACTTGCTCGGGAGACTTGCCAAAGCCGGTCTTGAGCAGGGTCTGGCCCCACGACTGAATCGTAAAAGAGCCCAGAATGAAGCAGAATGATCCCAGACTGACGATGAGAAGACTCTTGCGGTATTTACCAAAGACAAGTGAGTAGGAAGCGTCTTGGACGTGTTCAACGGCAGGCAAATCTCCAATGTCGTCAGCGGGCATATCGAGTGCCCAGGCTAGGGCCTCGCGTGCTTCCTTATCACGCCCATGACTCTGTAGGAACCGTGGTGATTCGGGCACGAAACGGATCCACACCAGCAGGAAAACAGGAATGGCGCCCAAAGCGATGAGGGCACGCCAATTATCGCCCAGTGCATTTTGTGCTAACGACCCCAAGAACAGACCGAGGGGGATGAATACCGACGCCAGGCCGGCAAGAAGACCGCGCTGCTTAGCAGGCACGAACTCCTGGACGTAGGGAATCGAGGTGATATTAAGTCCGCCGACTCCGATCCCCACGCCAATACGCAAAATGGCGAGCATAATCCAGCCACGATCTGGGGTGAACACTGATACTACAGTGAACACGACGAACAGGAGCACGCACCAGAAGAAAGAGGAGCGGCGTCCGATCTTGTCGGCAAGACGTCCCCACATGATGGCACCAATGACCGTCCCCAGACCGGAACAGGCGAGAATGACGCCCGCCTCAGTGCCAGTCAGATTCCATGGCTTAGTCAGGACGGATACGACGAAACCAATGAGGAAGATATCAAAGAACTCGGAGATATTTCCGACGACGGCTAGGGCAACAAGATTCTTCTGATTGCGCGTTAAGGGACGCGAATCGATGAGGTCTAGAGCTGATTGTTTGGGTGTTGTTGAGGTGGACAT > 893 HMPREF9583_00319 KEGG:_ach:Achl_0944_1.8e-81_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_sugar_porter_family_protein EFT69344.1 11 MVDETPPSGKHRGIGALAAVATLGSLLFGYDTGVISGALPYLYMPHLPGGLALTPMQEGAIGGTLLIGAAIGAVTGGIMSDRWGRRHNITILAVIFLLGALGTTFSPNVFVMYVFRFVLGFAVGAASATVPVYLAENAPKRIRGSIVAIDQLMIVTGQLLAFSMNAIINAAHGGPQLIIKANNNPDSLGITKGTYSWDQILALQASKGGPLEGDQYRAFVENLVIQSGNGAAWRWMLVLCSIPAIALWIGIRLMPESARWYLAKGRVADAVGALKRVRDPQKDGPLDAEVEEMLVTQQRELENKYQGNAFAHVWRTPWLRKLMLVGIFLAIVNQTTGVNTVMYYAPKVLEYAGMTTSASITAQVANGVMSVIGSVGGLWLILKFSRRSLLIFDVSAVGITLLVIAGTFQFTIAPHIADKTTPPTWAPYLILGLMAVFMLIVQSTNGTVVWTMLGEMFPANVRGIMNGTAIFFMWVINAVITFTFPSMMASLGGGLTYTIYGMMNLVIAVVLFKIMPETRNKSLEQIETYMEERYS high_GC_Gram+ Propionibacterium_acnes_HL038PA1 Propionibacterium_acnes_HL038PA1 ADYD01000015 573..2180 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1608 Propionibacterium_acnes_HL038PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL038PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_65.8xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 15-DEC-2010 Propionibacterium_acnes_HL038PA1_P_acnesHL038PA1-1.0_Cont12.3,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E6CPM8_PROAC.gb Propionicibacterium 302033260 Submitted_(23-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYD01000015 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1608 NA genomic_DNA NA HL038PA1 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765085 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYD01000015.1 TCAGGAGTAGCGCTCTTCCATGTACGTTTCGATCTGCTCCAAGGACTTATTTCGGGTCTCAGGCATGATCTTGAAGAGGACTACTGCGATGACGAGATTCATCATGCCGTAGATGGTGTACGTCAACCCACCTCCCAGACTTGCCATCATGGACGGGAAGGTGAAGGTGATGACAGCGTTAATAACCCACATGAAGAAGATGGCCGTGCCATTCATGATGCCGCGGACGTTTGCCGGGAACATCTCACCGAGCATGGTCCACACCACCGTGCCATTGGTAGATTGCACGATAAGCATAAACACCGCCATAAGACCAAGGATGAGGTACGGTGCCCACGTCGGCGGCGTGGTCTTGTCAGCAATGTGCGGGGCGATTGTGAACTGGAAGGTTCCCGCAATGACAAGCAAAGTAATGCCCACGGCGGAGACGTCGAAAATGAGTAAACTACGCCGGCTGAACTTGAGGATAAGCCACAAACCACCAACAGAACCAATGACGGACATGACACCATTGGCCACCTGCGCGGTGATCGAGGCAGAGGTCGTCATACCGGCATACTCCAGTACTTTCGGCGCGTAATACATCACGGTATTAACGCCTGTCGTCTGGTTGACGATTGCAAGGAAGATACCTACTAGCATGAGTTTGCGTAGCCACGGCGTTCGCCACACATGGGCAAAGGCGTTGCCCTGATACTTGTTCTCCAACTCGCGCTGCTGGGTGACAAGCATCTCCTCGACCTCAGCATCCAGAGGACCATCCTTCTGGGGATCGCGCACTCGTTTGAGAGCTCCGACAGCATCAGCCACCCGACCTTTGGCCAAGTACCAACGAGCCGACTCAGGCATGAGGCGAATACCTATCCACAGCGCGATGGCCGGGATTGAGCACAGCACCAGCATCCACCGCCAGGCCGCACCGTTACCAGACTGGATGACGAGATTCTCCACGAACGCGCGGTACTGGTCCCCCTCCAGCGGCCCGCCCTTCGAAGCCTGGAGAGCCAGAATCTGGTCCCACGAATAGGTGCCCTTGGTGATCCCGAGGCTGTCCGGATTGTTGTTGGCCTTGATGATCAACTGCGGACCGCCATGAGCGGCGTTAATGATGGCGTTCATGGAGAACGCCAACAGCTGACCGGTGACGATCATGAGTTGGTCGATAGCCACGATCGACCCCCTGATGCGCTTTGGCGCGTTTTCAGCAAGGTACACCGGAACAGTGGCTGACGCTGCGCCGACAGCGAATCCCAGCACGAAGCGGAAGACGTACATCACGAACACGTTCGGCGAGAACGTCGTGCCTAGGGCCCCCAGCAAGAAGATGACCGCGAGTATCGTGATGTTATGGCGCCGCCCCCACCGATCGGACATGATGCCGCCGGTCACGGCGCCAATTGCAGCGCCGATGAGGAGTGTGCCGCCGATGGCGCCCTCCTGCATCGGTGTTAAGGCGAGACCGCCAGGCAGGTGGGGCATGTACAGGTAGGGAAGCGCCCCCGATATGACACCTGTGTCATATCCAAAGAGTAGGGATCCCAGGGTCGCCACGGCAGCAAGCGCCCCGATGCCCCGGTGTTTGCCGGACGGCGGAGTCTCATCAACCAT > 894 HMPREF9583_01704 KEGG:_dfe:Dfer_1599_7.1e-32_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFT68093.1 11 MSTSTTPKQSALDLIDSRPLTRNQKNLVALAVVGNISEFFDIFLIGFVVSVLTKPWNLTGTEAGVILACSGLGTVIGAIMWGRLADKIGRRSSFFWCVLLFVVFTVVSVFTPDRGWIMLAILRIGVGIGVGGLNITSIPYVQEFVPAKQRGLLAGLASVFIPLGLFLGSLAQNALGDNWRALIALGAIPVFLLVWIRFVPESPRFLQSHGRDKEAREALAWALDMPADDIGDLPAVEHVQDASYSLVFGKYRKSLLIVSLGSFCFILGSFTIQSWGQTLLKTGFGKSPEQVGTLFMFVSLADLIGRFLSAWLADRIGRRATMLSFGLIGAGGTLIIALSARLGWGWQIFFVGVLIAMAFADGAFGILNAFGAEQFPNEARSTGLGLGYGIGATAKIIGPALMGLMVGGSAVKQNVTLDAVFPAFILFAVLLVIGGMTYMFARETRGTSLDTI high_GC_Gram+ Propionibacterium_acnes_HL038PA1 Propionibacterium_acnes_HL038PA1 ADYD01000044 25518..26876 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1359 Propionibacterium_acnes_HL038PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL038PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_65.8xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 15-DEC-2010 Propionibacterium_acnes_HL038PA1_P_acnesHL038PA1-1.0_Cont29.8,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E6CTC3_PROAC.gb Propionicibacterium 302033231 Submitted_(23-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYD01000044 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1359 NA genomic_DNA NA HL038PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765085 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYD01000044.1 ATGTCCACCTCAACAACACCCAAACAATCAGCTCTAGACCTCATCGATTCGCGTCCCTTAACGCGCAATCAGAAGAATCTTGTTGCCCTAGCCGTCGTCGGAAATATCTCCGAGTTCTTTGATATCTTCCTCATTGGTTTCGTCGTATCCGTCCTGACTAAGCCATGGAATCTGACTGGCACTGAGGCGGGCGTCATTCTCGCCTGTTCCGGTCTGGGGACGGTCATTGGTGCCATCATGTGGGGACGTCTTGCCGACAAGATCGGACGCCGCTCCTCTTTCTTCTGGTGCGTGCTCCTGTTCGTCGTGTTCACTGTAGTATCAGTGTTCACCCCAGATCGTGGCTGGATTATGCTCGCCATTTTGCGTATTGGCGTGGGGATCGGAGTCGGCGGACTTAATATCACCTCGATTCCCTACGTCCAGGAGTTCGTGCCTGCTAAGCAGCGCGGTCTTCTTGCCGGCCTGGCGTCGGTATTCATCCCCCTCGGTCTGTTCTTGGGGTCGTTAGCACAAAATGCACTGGGCGATAATTGGCGTGCCCTCATCGCTTTGGGCGCCATTCCTGTTTTCCTGCTGGTGTGGATCCGTTTCGTGCCCGAATCACCACGGTTCCTACAGAGTCATGGGCGTGATAAGGAAGCACGCGAGGCCCTAGCCTGGGCACTCGATATGCCCGCTGACGACATTGGAGATTTGCCTGCCGTTGAACACGTCCAAGACGCTTCCTACTCACTTGTCTTTGGTAAATACCGCAAGAGTCTTCTCATCGTCAGTCTGGGATCATTCTGCTTCATTCTGGGCTCTTTTACGATTCAGTCGTGGGGCCAGACCCTGCTCAAGACCGGCTTTGGCAAGTCTCCCGAGCAAGTCGGGACCCTGTTCATGTTCGTTTCCCTGGCCGATCTCATCGGGCGCTTCCTATCAGCATGGCTGGCAGACCGCATTGGTCGGAGAGCCACCATGTTGTCGTTTGGCCTCATCGGTGCTGGCGGGACTCTCATCATCGCCCTTTCGGCCCGCCTGGGTTGGGGCTGGCAGATCTTCTTCGTCGGTGTCCTCATTGCGATGGCCTTCGCCGACGGCGCCTTCGGCATCCTCAATGCTTTCGGCGCCGAGCAATTCCCCAACGAAGCTCGCTCGACTGGTCTGGGACTGGGCTACGGCATCGGCGCCACCGCCAAGATCATCGGTCCGGCGCTTATGGGACTCATGGTGGGCGGATCTGCCGTCAAGCAGAATGTCACCCTGGACGCGGTATTTCCGGCATTCATCCTGTTCGCTGTGCTGCTAGTCATTGGCGGTATGACGTACATGTTTGCCCGCGAAACTCGTGGCACCTCGCTCGACACGATCTGA > 895 HMPREF9583_01816 KEGG:_hmu:Hmuk_3220_1.7e-62_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 MFS_transporter,_sugar_porter_family_protein EFT68203.1 11 MASNGHARVEMKPGDSGSAGATRNSQTSWAVFIAVTAAALGITYGYDISNTAAALQFVQRDFGIYSAINTASVVGQIAGAILGGPMANAIGRKKSMLVIAAGYTIFAILTAISPSAGLFLAMRVLLGITIGLSITVVPVFIAESAPASRRGGLATAYQVTCVVGIILGYLVGYSLLPTDTWRWILGVAAVPAFIVLLMLVRTQETPSWYMLKGREDEARRAMERIEVAELVEPSLDEIRNSLSSRPSGSVWGRLREMFHGGMARATIFAIVLGFSIQITGINATIYYAPGIYSRMGFTDTATTYLVPSLVQFLSLISVVISMLVIDKVGRRFVLITGISTMIVATIVLIVTYLASGFEGAVAGIIGLVGMSLFTMGFTFGFGSIVWVYAGEIFPARYRSLGASLVLTADLIANAITAQLGAAMLDGIGLAGTFGVYGGLLVVALLFLLRYAPETSGRSLEEIQDYWNNGARWPKADSPSMG high_GC_Gram+ Propionibacterium_acnes_HL038PA1 Propionibacterium_acnes_HL038PA1 ADYD01000044 134836..136281 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1446 Propionibacterium_acnes_HL038PA1_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL038PA1_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_65.8xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 15-DEC-2010 Propionibacterium_acnes_HL038PA1_P_acnesHL038PA1-1.0_Cont29.8,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E6CTN3_PROAC.gb Propionicibacterium 302033231 Submitted_(23-AUG-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYD01000044 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1446 NA genomic_DNA NA HL038PA1 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765085 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYD01000044.1 ATGGCGTCGAATGGTCATGCGCGCGTAGAGATGAAGCCTGGTGATTCCGGGTCAGCTGGTGCGACGAGAAATAGTCAGACGAGCTGGGCCGTCTTCATTGCGGTGACGGCAGCAGCCCTGGGAATCACTTATGGTTATGATATTTCTAATACCGCGGCCGCTTTGCAATTTGTACAGCGAGACTTTGGTATCTATAGCGCCATCAACACGGCCTCCGTGGTAGGTCAAATAGCAGGTGCCATTCTTGGCGGCCCTATGGCGAATGCCATCGGACGTAAGAAGTCAATGCTGGTTATCGCGGCTGGATATACTATTTTCGCTATCCTGACAGCAATCTCCCCGTCCGCTGGACTGTTCCTTGCTATGCGGGTTCTGTTGGGTATCACTATCGGGCTTTCCATTACCGTCGTGCCGGTGTTTATCGCCGAATCCGCTCCGGCGTCGCGGCGGGGCGGGCTGGCAACCGCGTATCAAGTGACGTGCGTCGTCGGAATCATCTTGGGGTACCTCGTCGGTTATTCCCTGCTGCCTACGGACACGTGGCGTTGGATTCTCGGTGTCGCAGCCGTCCCAGCATTTATTGTGCTCCTGATGCTTGTTCGCACCCAGGAAACCCCCTCCTGGTACATGCTCAAGGGGCGTGAAGATGAGGCTCGTCGTGCCATGGAGCGCATCGAGGTTGCTGAATTGGTTGAGCCGAGCCTCGATGAGATCCGCAACTCGTTGTCTTCTCGGCCCTCTGGATCTGTATGGGGGCGGTTGCGTGAGATGTTCCATGGGGGCATGGCTCGTGCCACGATCTTTGCTATCGTTCTGGGATTTTCAATCCAGATCACTGGAATTAATGCAACAATCTATTATGCGCCTGGAATCTATTCGCGAATGGGATTTACTGACACTGCGACAACCTATCTGGTGCCATCCTTGGTGCAGTTCCTATCATTGATAAGTGTTGTCATCTCGATGCTCGTTATTGATAAGGTAGGGCGTCGATTCGTTCTTATCACGGGAATATCTACGATGATTGTAGCGACTATCGTGCTCATCGTGACATATTTGGCGAGTGGTTTTGAAGGTGCTGTTGCCGGTATTATTGGCCTCGTTGGGATGTCCCTTTTTACTATGGGGTTTACTTTCGGTTTCGGTTCCATCGTATGGGTTTACGCGGGTGAGATTTTCCCGGCTCGCTACCGCTCACTCGGTGCATCTCTGGTGCTTACGGCAGACTTGATCGCGAATGCGATCACTGCCCAATTGGGAGCTGCGATGCTCGACGGTATCGGGCTGGCAGGAACATTCGGGGTCTACGGTGGGCTCCTCGTCGTTGCGCTGCTATTCCTGCTGAGGTACGCCCCGGAAACGTCCGGTCGCTCGCTTGAGGAGATCCAGGACTATTGGAACAACGGTGCTCGGTGGCCCAAGGCTGACTCGCCTTCGATGGGGTGA > 896 HMPREF9615_00290 KEGG:_gdj:Gdia_1773_2.6e-15_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFT59398.1 11 MSNVEAIAARKSWRDELTGTQWKSFWAAWIGYLLDGFDFVMITLVLTEIGRTFHVGPAATATLVSAAFIARWFGGLLLGAIGDRIGRKEAMVISILLYAGGSVVCAIAPAFWVIFVARVCIGMGMAGEYGSSATYVIESWPVRLRNKASGFLISGFSLGAGVTAQVYALIEYLTRGTSAEPHTWRILFALGIIPIALALWLRRALPEAADFVKMREEEAARAAVGETVKKTDMFTMLFARNPKRSIINIVLALTTFGCLIVIYLFKSGVPGLVLALLWVVVAAVMVSFMVQFEGPRWPTGVAVMITVFVAFLYSWPLQALLPTYYRQTLGLASDTASNLVTATSFGAAAGCIMAGFIGDRFGTRKAYWVSLLISEFLVLPVFLVSRGMVHSSVIWVVLLGVFIFVQQMFGQGISGLLPKFISNYFPVEKRAAGLGFSYNVGALGGAIAPVLGIALAGDPATGVGGVLPSSWGLGWTLFILSFVFTAVIIVLIAINFPLRMQKLLRPDHVRPADRMDHVDEELAVSRNPDTIVAS high_GC_Gram+ Propionibacterium_acnes_HL002PA3 Propionibacterium_acnes_HL002PA3 ADYR01000003 165290..166894 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1605 Propionibacterium_acnes_HL002PA3_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL002PA3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_73.6xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 15-DEC-2010 Propionibacterium_acnes_HL002PA3_P_acnesHL002PA3-1.0_Cont4.1,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E6DBI3_PROAC.gb Propionicibacterium 302035020 Submitted_(10-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYR01000003 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1605 NA genomic_DNA NA HL002PA3 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765117 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYR01000003.1 ATGAGCAACGTCGAGGCCATAGCAGCCAGGAAATCATGGCGTGACGAGTTGACTGGCACGCAGTGGAAATCCTTCTGGGCAGCATGGATCGGTTATCTGCTGGACGGATTCGACTTCGTCATGATCACGCTGGTCCTCACCGAGATCGGCAGGACCTTTCACGTCGGACCAGCGGCGACTGCGACCTTGGTGTCCGCTGCTTTTATTGCGCGATGGTTCGGCGGACTGCTGCTGGGAGCTATCGGTGACCGGATCGGCCGCAAGGAGGCTATGGTCATCTCAATTCTGCTTTATGCGGGTGGATCGGTCGTCTGTGCCATTGCCCCGGCTTTCTGGGTTATCTTCGTCGCCCGTGTCTGCATCGGCATGGGTATGGCCGGTGAGTACGGCTCTTCAGCCACCTACGTCATTGAGTCCTGGCCAGTGCGTCTGCGGAATAAGGCCTCCGGGTTCCTTATTTCCGGATTTTCCCTTGGCGCCGGTGTGACGGCTCAGGTGTATGCCCTCATCGAGTACCTTACCCGTGGTACCTCCGCTGAGCCTCATACCTGGCGAATACTCTTCGCGCTTGGCATTATTCCGATCGCCTTGGCCCTGTGGCTGCGTCGTGCCCTTCCTGAGGCCGCCGACTTTGTAAAAATGCGCGAGGAGGAGGCCGCTCGCGCCGCTGTCGGCGAGACTGTCAAGAAGACTGACATGTTCACCATGCTCTTCGCACGTAACCCGAAGCGAAGCATCATTAACATTGTTCTGGCCCTCACAACTTTCGGATGCCTAATCGTCATTTACCTGTTCAAGAGCGGCGTCCCGGGGCTCGTGTTGGCATTGCTGTGGGTCGTTGTCGCGGCCGTCATGGTGAGCTTCATGGTCCAGTTCGAGGGACCGCGTTGGCCGACAGGTGTGGCCGTTATGATCACGGTGTTTGTCGCCTTCCTCTACTCCTGGCCTTTGCAGGCTCTGTTGCCTACCTACTATCGCCAAACCCTGGGCCTGGCGAGCGACACCGCTTCCAATCTCGTGACCGCCACTTCTTTTGGCGCGGCAGCGGGCTGCATCATGGCCGGATTTATCGGTGACAGATTCGGAACCCGCAAGGCCTATTGGGTCTCCCTGCTCATCTCGGAGTTCCTCGTCCTGCCGGTCTTCCTCGTCAGCCGAGGCATGGTGCATTCCTCGGTGATATGGGTCGTGCTTCTTGGAGTTTTCATCTTTGTCCAGCAGATGTTCGGACAAGGTATCTCTGGTCTGCTACCGAAGTTCATTTCGAACTACTTTCCGGTCGAGAAGCGCGCTGCTGGTTTGGGTTTCTCTTATAACGTCGGAGCTCTTGGTGGGGCTATCGCCCCGGTCCTCGGCATTGCCCTGGCAGGTGATCCAGCTACCGGTGTTGGCGGTGTGCTGCCCTCCAGCTGGGGCCTCGGATGGACCCTGTTCATCTTGTCCTTCGTATTCACCGCGGTGATCATCGTTCTTATCGCCATCAATTTCCCGCTCCGGATGCAGAAGCTGTTGCGCCCCGACCACGTGCGTCCCGCTGACCGGATGGATCACGTCGATGAAGAGCTTGCTGTTTCCCGGAACCCTGACACTATCGTCGCCTCGTGA > 897 HMPREF9615_01423 NA MFS_transporter,_sugar_porter_family_protein EFT58269.1 11 MVDETPPSGKHRGIGALAAVATLGSLLFGYDTGVISGALPYLYMPHLAGGLALTPMQEGAIGGTLLIGAAIGAVTGGIMSDRWGRRHNITILAVIFLLGALGTTFSPNGFVMYVFRFVLGFAVGAASATVPVYLAENAPKRIRGSIVAIDQLMIVTGQLLAFSMNAIINAAHGGPQLIIKANNNPDSLGITKGTYSWDQILALQASKGGPLEGDQYRAFVENLVIQSGNGAAWRWMLVLCSIPAIALWIGIRLMPESARWYLAKGRVADAVGALKRVRDPQKDGPLDAEVEEMLVTQQRELENKYQGNAFAHVWRTPWLRKLMLVGIFLAIVNQTTGVNTVMYYAPKVLEYAGMTTSASITAQVANGVMSVIGSVGGLWLILKFSRRSLLIFDVSAVGITLLVIAGTFQFTIAPHIADKTTPPTWAPYLILGLMAVFMLIVQSTNGTVVWTMLGEMFPANVRGIMNGTAIFFMWVINAVITFTFPSMMASLGGGLTYTIYGMMNLVIAVVLFKIMPETRNKSLEQIETYMEERYS high_GC_Gram+ Propionibacterium_acnes_HL002PA3 Propionibacterium_acnes_HL002PA3 ADYR01000017 219944..221551 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1608 Propionibacterium_acnes_HL002PA3_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL002PA3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_73.6xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 15-DEC-2010 Propionibacterium_acnes_HL002PA3_P_acnesHL002PA3-1.0_Cont33.5,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E6DEN7_PROAC.gb Propionicibacterium 302035006 Submitted_(10-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYR01000017 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1608 NA genomic_DNA NA HL002PA3 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765117 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYR01000017.1 ATGGTTGATGAGACTCCGCCGTCCGGCAAACACCGGGGCATCGGGGCGCTTGCTGCCGTGGCGACCCTGGGATCCCTACTCTTTGGATATGACACAGGTGTCATATCGGGGGCGCTTCCCTACCTGTACATGCCCCACCTGGCTGGCGGTCTCGCCTTAACACCGATGCAGGAGGGCGCCATCGGCGGCACACTCCTCATCGGCGCTGCAATTGGCGCCGTGACCGGCGGCATCATGTCCGATCGGTGGGGGCGGCGCCATAACATCACGATACTCGCGGTCATCTTCTTGCTGGGGGCCCTAGGCACGACGTTCTCGCCGAACGGGTTCGTGATGTACGTCTTCCGCTTCGTGCTGGGATTCGCTGTCGGCGCAGCGTCAGCCACTGTTCCGGTGTACCTTGCTGAAAACGCGCCAAAGCGCATCAGGGGGTCGATCGTGGCTATCGACCAACTCATGATCGTCACCGGTCAGCTGTTGGCGTTCTCCATGAACGCCATCATTAACGCCGCTCATGGCGGTCCGCAGTTGATCATCAAGGCCAACAACAATCCGGACAGCCTCGGGATCACCAAGGGCACCTATTCGTGGGACCAGATTCTGGCTCTCCAGGCTTCGAAGGGCGGGCCGCTGGAGGGGGACCAGTACCGCGCGTTCGTGGAGAATCTCGTCATCCAGTCTGGTAACGGTGCGGCCTGGCGGTGGATGCTGGTGCTGTGCTCAATCCCGGCCATCGCGCTGTGGATAGGTATTCGCCTCATGCCTGAGTCGGCTCGTTGGTACTTGGCCAAAGGTCGGGTGGCTGATGCTGTCGGAGCTCTCAAACGAGTGCGCGATCCCCAGAAGGATGGTCCTCTGGATGCTGAGGTCGAGGAGATGCTTGTCACCCAGCAGCGCGAGTTGGAGAACAAGTATCAGGGCAACGCCTTTGCCCATGTGTGGCGAACGCCGTGGCTACGCAAACTCATGCTAGTAGGTATCTTCCTTGCAATCGTCAACCAGACGACAGGCGTTAATACCGTGATGTATTACGCGCCGAAAGTACTGGAGTATGCCGGTATGACGACCTCTGCCTCGATCACCGCGCAGGTGGCCAATGGTGTCATGTCCGTCATTGGTTCTGTTGGTGGTTTGTGGCTTATCCTCAAGTTCAGCCGGCGTAGTTTACTCATTTTCGACGTCTCCGCCGTGGGCATTACTTTGCTTGTCATTGCGGGAACCTTCCAGTTCACAATCGCCCCGCACATTGCTGACAAGACCACGCCGCCGACGTGGGCACCGTACCTCATCCTTGGTCTTATGGCGGTGTTTATGCTTATCGTGCAATCTACCAATGGCACGGTGGTGTGGACCATGCTCGGTGAGATGTTCCCGGCAAACGTCCGCGGCATCATGAATGGCACGGCCATCTTCTTCATGTGGGTTATTAACGCTGTCATCACCTTCACCTTCCCGTCCATGATGGCAAGTCTGGGAGGTGGGTTGACGTACACCATCTACGGCATGATGAATCTCGTCATCGCAGTAGTCCTCTTCAAGATCATGCCTGAGACCCGAAATAAGTCCTTGGAGCAGATCGAAACGTACATGGAAGAGCGCTACTCCTGA > 898 HMPREF9615_01448 NA MFS_transporter,_sugar_porter_family_protein EFT58294.1 11 MSVTSRIEVAELVETTQPAGPKRRMGVVAAVATLGSLLFGYDTGVISGALPFMYLPHGAGGLALTVGHEGAIGGTLTLGAAFGGLIGGMMSDRWGRRHNLLILAVLFVVGALGTAGAPSVWVMYPFRVVLGFAVGAASATVPVYLSETSPKRMRGRIVALDQFMIVFGQLLAFSVNAAISAAHGGPSLMVTADPTGRLSPGTYSWDTLQAMTTSHGGAMTDQAFHAFLTQLSVSAGSGGAWRWMLVVCTLPAIALWIGMRKMPESARWHLSHGQLRETVACLKQVRVEGVDEPIVDEVTEMVELNGEGGRLSHRQQWAVVMESRWTRRLLLVGIFLAVVNQTTGVNTVMYYAPKVLEFAGMSTQASIISQVANGVMSVIGAAAGLWLIERFDRRHLLIFDVTAVGVCLLGIAATFGLAIAPHVGQGVPKWAPILVLVLMSIFMLIVQSTNGTVVWTMLGEMFPTRMRGAMDGAAVFCGWLANATITWTFPAMLAGLGGAGTYLTYGLVNLMIALVLVKVMPETKGRSLEEIEVEMKQRYA high_GC_Gram+ Propionibacterium_acnes_HL002PA3 Propionibacterium_acnes_HL002PA3 ADYR01000017 243030..244652 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1623 Propionibacterium_acnes_HL002PA3_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL002PA3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_73.6xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 15-DEC-2010 Propionibacterium_acnes_HL002PA3_P_acnesHL002PA3-1.0_Cont33.5,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E6DEZ6_PROAC.gb Propionicibacterium 302035006 Submitted_(10-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYR01000017 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1623 NA genomic_DNA NA HL002PA3 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765117 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYR01000017.1 TTGTCCGTGACATCGAGAATCGAGGTGGCCGAGCTCGTTGAGACAACGCAGCCGGCTGGCCCGAAGCGCCGTATGGGTGTAGTGGCCGCAGTCGCTACCCTGGGTTCACTTCTTTTCGGCTACGACACCGGAGTCATTTCTGGCGCCTTGCCGTTCATGTATCTGCCTCATGGCGCTGGCGGTCTGGCCCTGACGGTGGGACATGAAGGTGCCATCGGTGGCACCTTAACCCTTGGCGCTGCTTTCGGCGGCCTTATAGGCGGGATGATGAGCGACCGCTGGGGTCGGCGTCATAACCTCCTGATTTTGGCTGTCCTCTTTGTTGTGGGAGCTTTGGGAACTGCCGGTGCCCCCAGCGTGTGGGTGATGTACCCCTTCCGAGTGGTGCTCGGATTCGCCGTGGGAGCGGCCTCAGCAACAGTGCCAGTCTACTTGTCGGAGACCTCACCCAAACGGATGCGTGGGCGGATCGTGGCGCTTGACCAATTTATGATCGTCTTTGGTCAGCTGCTGGCTTTCTCCGTCAATGCCGCCATCTCAGCGGCTCATGGGGGACCCAGTTTGATGGTGACTGCGGATCCGACGGGACGACTGTCTCCGGGAACTTATTCCTGGGACACTTTGCAGGCCATGACGACCTCCCACGGGGGAGCGATGACCGACCAGGCTTTTCATGCCTTCCTTACTCAGCTGTCGGTATCAGCCGGGTCCGGTGGAGCATGGCGCTGGATGCTCGTGGTATGCACTCTGCCCGCCATCGCGCTGTGGATCGGTATGAGGAAGATGCCCGAGTCGGCTCGTTGGCATCTAAGCCATGGTCAGCTTCGGGAGACCGTCGCATGCCTCAAACAGGTGCGCGTCGAAGGGGTTGATGAACCCATCGTCGATGAGGTCACTGAGATGGTTGAACTCAACGGCGAGGGCGGCAGGCTCAGTCACCGTCAGCAGTGGGCGGTCGTCATGGAGTCTCGCTGGACGCGTCGCCTCCTGCTGGTCGGGATTTTCCTTGCTGTAGTTAACCAAACCACCGGCGTCAATACCGTCATGTATTACGCGCCCAAGGTGTTGGAGTTCGCAGGAATGAGCACCCAGGCGTCGATTATTTCTCAGGTGGCTAATGGAGTCATGTCTGTTATTGGTGCCGCTGCAGGCTTGTGGCTCATCGAACGGTTTGATCGTCGTCACCTGCTTATCTTCGATGTCACGGCGGTCGGTGTGTGTCTCCTTGGTATTGCGGCTACTTTCGGGCTGGCAATTGCTCCTCATGTGGGTCAAGGGGTACCGAAGTGGGCGCCTATTCTCGTGCTCGTCCTGATGAGTATCTTCATGCTTATCGTGCAGTCCACTAACGGCACAGTGGTGTGGACCATGCTTGGTGAGATGTTCCCGACCCGGATGCGCGGGGCGATGGACGGTGCTGCGGTGTTTTGTGGGTGGCTGGCTAATGCGACGATCACCTGGACCTTCCCGGCCATGCTGGCGGGGCTCGGCGGTGCGGGAACCTACCTGACCTATGGCCTGGTAAACCTCATGATCGCGTTGGTCCTCGTCAAGGTCATGCCGGAGACCAAGGGACGCTCACTGGAGGAGATCGAGGTCGAGATGAAGCAGCGCTACGCCTAA > 899 HMPREF9615_02106 KEGG:_dfe:Dfer_1599_4.3e-32_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFT57787.1 11 MSTSTTPKQSALDLIDSRPLTRNQKNLVALAVVGNISEFFDIFLIGFVVSVLTKPWNLTGTEAGVILACSGLGTVIGAIMWGRLADKIGRRSSFFWCVLLFVVFTVVSVFTPDRGWIMLAILRIGVGIGVGGLNITSIPYVQEFVPAKQRGLLAGLASVFIPLGLFLGSLAQNALGDNWRALIALGAIPVFLLVWIRFVPESPRFLQSHGRDKEAREALAWALDIPADDIGDLPAVEHVQDASYSLVFGKYRKSLLIVSLGSFCFILGSFTIQSWGQTLLKTGFGKSPEQVGTLFMFVSLADLIGRFLSAWLADRIGRRATMLSFGLIGAGGTLIIALSARLGWGWQIFFVGVLIAMAFADGAFGILNAFGAEQFPNEARSTGLGLGYGIGATAKIIGPALMGLMVGGSAVKQNVTLDAVFPAFILFAVLLVIGGMTYMFARETRGTSLDTI high_GC_Gram+ Propionibacterium_acnes_HL002PA3 Propionibacterium_acnes_HL002PA3 ADYR01000020 494243..495601 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1359 Propionibacterium_acnes_HL002PA3_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL002PA3_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_73.6xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 15-DEC-2010 Propionibacterium_acnes_HL002PA3_P_acnesHL002PA3-1.0_Cont36.3,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E6DGT2_PROAC.gb Propionicibacterium 302035003 Submitted_(10-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADYR01000020 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1359 NA genomic_DNA NA HL002PA3 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765117 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADYR01000020.1 TCAGATCGTGTCGAGCGAGGTGCCACGAGTTTCGCGGGCAAACATGTACGTCATACCGCCAATGACTAGCAGCACAGCGAACAGGATGAATGCCGGAAATACCGCGTCCAGGGTGACATTCTGCTTGACGGCAGATCCGCCCACCATGAGTCCCATAAGCGCCGGACCGATGATCTTGGCGGTGGCGCCGATGCCGTAGCCCAGTCCCAGACCAGTCGAGCGAGCTTCGTTGGGGAATTGCTCGGCGCCGAAAGCATTGAGGATGCCGAAGGCGCCGTCGGCGAAGGCCATCGCAATGAGGACACCGACGAAGAAGATCTGCCAGCCCCAACCCAGGCGGGCCGAAAGGGCGATGATGAGAGTCCCGCCAGCACCGATGAGGCCAAACGACAACATGGTGGCTCTCCGACCAATGCGGTCTGCCAGCCATGCTGATAGGAAGCGCCCGATGAGATCGGCCAGGGAAACGAACATGAACAGGGTCCCGACTTGCTCGGGAGACTTGCCAAAGCCGGTCTTGAGCAGGGTCTGGCCCCACGACTGAATCGTAAAAGAGCCCAGAATGAAGCAGAATGATCCCAGACTGACGATGAGAAGACTCTTGCGGTATTTACCAAAGACAAGTGAGTAGGAAGCGTCTTGGACGTGTTCAACGGCAGGCAAATCTCCAATGTCGTCAGCGGGTATATCGAGTGCCCAGGCTAGGGCCTCGCGTGCTTCCTTATCACGCCCATGACTCTGTAGGAACCGTGGTGATTCGGGCACGAAACGGATCCACACCAGCAGGAAAACAGGAATGGCGCCCAAAGCGATGAGGGCACGCCAATTATCGCCCAGTGCATTTTGTGCTAACGACCCCAAGAACAGACCGAGGGGGATGAATACCGACGCCAGGCCGGCAAGAAGACCGCGCTGCTTAGCAGGCACGAACTCCTGGACGTAGGGAATCGAGGTGATATTAAGTCCGCCGACTCCGATCCCCACGCCAATACGCAAAATGGCGAGCATAATCCAGCCACGATCTGGGGTGAACACTGATACTACAGTGAACACGACGAACAGGAGCACGCACCAGAAGAAAGAGGAGCGGCGTCCGATCTTGTCGGCAAGACGTCCCCACATGATGGCACCAATGACCGTCCCCAGACCGGAACAGGCGAGAATGACGCCCGCCTCAGTGCCAGTCAGATTCCATGGCTTAGTCAGGACGGATACGACGAAACCAATGAGGAAGATATCAAAGAACTCGGAGATATTTCCGACGACGGCTAGGGCAACAAGATTCTTCTGATTGCGCGTTAAGGGACGCGAATCGATGAGGTCTAGAGCTGATTGTTTGGGTGTTGTTGAGGTGGACAT > 900 HMPREF9565_00467 NA transporter,_major_facilitator_family_protein EFT51179.1 11 MYTYTTFAAYFEDQFFSPDDPHKSIYIYAIFWATFIMRPFGSWFFGRWADRHGRRSALIMAVTIMAVGSLVISVLPTRGTIGVGAPILLLICRIVQGFATGGEYGTSATYMSEASTKGHRGFFSSFQYFTLVGGLVTAQAVLLLLSSLMSEATIHAWGWRIPFFIGGVAALIVFFMQKTMDESLSTEHLKSVRSGEDSSSGSLKELFGNHLGNFLLAFTIASGGTLCFYVYTVNAPNIVHSIFSSTPMAATAVNLIALFILMLGQPLGGLIGDRIGRKPVLLFFAAGGVVYTWVLVTCLSHARKPVTAFLMLLMGYIFLTGYTSISAVVKSDLFPTDVRALGVGMAHGFANSLFGGTAPLIYVWAKQGDAIPAFIGYVTALSAVTLLTILFGLTTRTASHLDAPTKGGHD high_GC_Gram+ Propionibacterium_acnes_HL053PA2 Propionibacterium_acnes_HL053PA2 ADZB01000014 8917..10149 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1233 Propionibacterium_acnes_HL053PA2_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL053PA2_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_68.1xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 15-DEC-2010 Propionibacterium_acnes_HL053PA2_P_acnesHL053PA2-1.0_Cont103.3,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E6DRQ6_PROAC.gb Propionicibacterium 301752440 Submitted_(10-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZB01000014 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1233 NA genomic_DNA NA HL053PA2 NA Propionicibacterium_acnes NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765067 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZB01000014.1 TTAGTCGTGCCCACCCTTCGTCGGCGCATCCAGGTGTGACGCAGTCCGTGTGGTCAGCCCGAAGAGGATCGTAAGTAAGGTGACCGCGGACAGCGCCGTCACATACCCGATGAAGGCGGGGATCGCGTCACCCTGTTTCGCCCACACGTAAATGAGTGGAGCCGTGCCGCCGAACAGGGAATTCGCGAAACCATGGGCCATCCCAACACCCAGCGCCCTGACATCGGTTGGGAAAAGGTCGGACTTCACAACTGCGGAGATCGAGGTATATCCGGTAAGGAAGATATAGCCCATGAGCAGCATGAGGAATGCAGTTACGGGCTTGCGGGCATGCGACAGACAGGTCACGAGAACCCAGGTATAAACGACTCCACCGGCGGCAAAGAAGAGCAACACCGGTTTGCGTCCGATCCGGTCACCGATGAGGCCTCCCAGCGGTTGCCCGAGCATGAGGATGAATAGGGCGATGAGGTTGACCGCGGTTGCCGCCATCGGAGTGCTGCTGAAAATCGAATGGACGATATTCGGTGCATTGACGGTGTAGACGTAGAAGCACAGGGTACCGCCGCTGGCGATGGTAAAAGCCAGGAGGAAGTTACCGAGATGGTTTCCAAAGAGCTCTTTCAGACTTCCTGACGAGCTGTCCTCACCCGACCGCACGGATTTAAGATGTTCGGTACTCAGCGATTCATCCATCGTCTTCTGCATGAAGAAAACGATGAGCGCTGCGACGCCACCGATGAAGAATGGGATGCGCCATCCCCAGGCATGGATCGTGGCCTCACTCATGAGGGAGGACAGCAGGAGTAGGACGGCCTGGGCTGTCACTAAACCACCCACGAGGGTGAAGTACTGGAACGAGGAGAAGAAACCGCGGTGTCCCTTGGTGGAGGCTTCTGACATGTAGGTGGCCGAGGTGCCGTACTCACCTCCTGTGGCGAATCCTTGCACGATACGACAGATGAGCAACAGGATCGGGGCCCCCACTCCGATGGTGCCTCGGGTGGGCAACACGGAGATGACGAGGGAGCCGACGGCCATGATTGTCACTGCCATGATGAGGGCGGACCGACGTCCGTGACGGTCGGCCCAGCGACCGAAGAACCACGATCCGAACGGCCTCATGATGAAGGTCGCCCAGAAAATCGCGTAGATGTAGATGCTCTTGTGCGGGTCGTCAGGCGAGAAGAACTGGTCCTCGAAATAGGCTGCGAACGTCGTGTACGTGTACAC > 901 HMPREF9565_00562 NA transporter,_major_facilitator_family_protein EFT51273.1 11 MFLTIWWSVWVYPAHAIPTWRRTAVSDAQATERTITSLIPARIDRLPWSTFHTMVIVGLGTAWILDGIEVQIVAANGFAKPLHMSTTEVTAAATFYLLGQVLGALFFGKLTDRIGRKKLFTLTLLVYLLGSGIAGLSFSTWFLYVCRFIAGSGIGGEYSAINSAIDELIPAQYRGRVDLSVNGTYWAGVMLGSVATIYLLDPTKVAEFWGWRIGFFIGPVLGIVVILIRKHIPESPRWMLTHGYGEQAEEIVAGIEQDVRESGHELEPVSDDQAITLEPEVRRQGRRNFSQRWVEFKESGAELVEVFLRRYWKRTVLGVTLMVTQSFLYNAIFFTYEIVLSQFYSVSKSDVGLYMIPFAVGNLLGPILLGRFFDTVGRRKMIFATYGIAALVLAISAILFQRDALTPTTHTIFWCVAFFFASAGASSAYLTVSEIFPLEVRGQAISYFFSIAQIAGAIAPFIFGNLIGDGSSRGPLVGGYFIGAGIMLTGGLVALFMGVDAEGKGLEAITDPLSRDRAKKSAARQAE high_GC_Gram+ Propionibacterium_acnes_HL053PA2 Propionibacterium_acnes_HL053PA2 ADZB01000014 92221..93804 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1584 Propionibacterium_acnes_HL053PA2_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL053PA2_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_68.1xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 15-DEC-2010 Propionibacterium_acnes_HL053PA2_P_acnesHL053PA2-1.0_Cont103.3,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E6DS00_PROAC.gb Propionicibacterium 301752440 Submitted_(10-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZB01000014 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1584 NA genomic_DNA NA HL053PA2 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765067 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZB01000014.1 ATGTTTCTCACTATTTGGTGGAGTGTGTGGGTATACCCTGCTCACGCCATCCCCACATGGAGGAGGACCGCTGTGTCAGACGCCCAAGCCACTGAGCGAACGATCACATCACTGATACCGGCCCGTATCGACCGGCTGCCGTGGTCGACATTTCACACCATGGTTATCGTCGGTCTAGGAACAGCGTGGATCCTCGACGGTATTGAGGTGCAGATCGTCGCAGCAAATGGCTTTGCAAAACCGCTGCACATGTCCACCACCGAGGTTACCGCGGCAGCAACCTTCTACCTGCTTGGCCAAGTACTTGGTGCTCTCTTCTTCGGCAAACTTACCGACCGTATTGGTCGAAAGAAACTCTTCACTCTGACTCTCCTGGTTTACCTTCTTGGTTCGGGTATTGCAGGTTTGTCCTTCTCGACGTGGTTCCTCTATGTGTGCCGGTTTATTGCTGGATCTGGTATTGGTGGTGAATATTCAGCGATCAACTCGGCCATCGATGAGCTCATTCCAGCCCAGTATCGCGGTCGGGTGGACTTGTCTGTCAATGGCACCTACTGGGCTGGCGTCATGCTCGGTTCGGTCGCCACTATTTACCTCCTTGACCCGACGAAGGTCGCGGAGTTTTGGGGCTGGCGTATTGGCTTCTTTATTGGTCCGGTTCTCGGCATTGTTGTCATCCTTATTCGTAAGCACATTCCGGAGTCGCCTCGGTGGATGCTGACGCACGGTTACGGTGAGCAGGCCGAAGAGATCGTTGCCGGGATCGAGCAGGATGTTCGGGAGTCGGGGCATGAACTTGAGCCGGTTAGCGACGACCAGGCCATCACCTTGGAACCCGAGGTGAGGCGTCAAGGTCGCCGCAACTTCTCCCAGCGTTGGGTAGAGTTTAAGGAGTCTGGTGCTGAGCTGGTCGAGGTGTTCCTGCGTCGCTATTGGAAGCGCACTGTGCTGGGTGTCACCCTTATGGTGACCCAGTCCTTCCTGTACAACGCCATCTTTTTCACCTATGAGATCGTGCTGTCGCAGTTCTATTCAGTGTCTAAATCTGACGTCGGCTTATATATGATCCCATTCGCGGTCGGAAACCTACTCGGCCCAATTCTACTGGGACGATTCTTCGACACTGTTGGTCGACGTAAGATGATTTTCGCCACCTACGGAATAGCTGCTCTAGTGCTGGCTATCAGTGCGATACTGTTCCAGCGTGACGCCCTGACGCCGACCACCCACACTATCTTCTGGTGCGTCGCTTTCTTTTTTGCTAGTGCCGGAGCTTCCTCGGCCTATCTGACAGTGTCTGAGATTTTCCCGCTGGAAGTTCGTGGCCAGGCTATTAGCTACTTTTTCTCGATCGCCCAGATTGCCGGTGCTATCGCTCCATTCATCTTCGGTAACCTCATCGGTGACGGTTCCTCGCGCGGCCCCCTTGTCGGCGGTTACTTCATCGGTGCCGGCATCATGCTTACCGGTGGTCTCGTCGCTTTGTTCATGGGCGTTGACGCCGAGGGCAAGGGTCTGGAGGCCATCACTGATCCGCTCAGCCGTGACCGTGCCAAGAAGTCCGCCGCCCGTCAAGCGGAGTGA > 902 HMPREF9565_02282 KEGG:_bid:Bind_0105_6.8e-14_sugar_transporter;_Psort_location:_CytoplasmicMembrane,_score:_10.00 transporter,_major_facilitator_family_protein EFT49401.1 11 MASSDDIITIKEMGDKRRWWQYLDATKWKLFIAALIGVTLDGYDFVLITLALPEIKAAFGLTLVQSAALVSAAFITRWLGGLILGGVGDRFGRKPAMIIATVLFAIGSLLMGFSPNFMFLFIMRMVVGFAMAGEYGSSATYVIESWHPRIRGKASSFLLSGYAIGAILAVQVDKYLVPWVDSWHAGWGWRALFITGIVPIAVALYMRRRLPEASDWETAKSREREKSSESRDAFQVLFSGRRMSLNITLVIAAMAGLLAIFALNILPFWGVLAVAIACGAIFVCLIVQFDPRRWVIGIGIMIVILSAFMYGWPILGLLPTYLTGAGYAASTVANLLTIAQFGNMIGYFVTGFMGDWIGMRKWYFTSILIAQIIVFPLFFAGIKSAWLIGLLLFFNQLFGQGVSGLAPRWVSSYFPVEQRAAGVGFIYNVGALGGAIGPFVGASLAKSHGLGSALGVLSVGFGLIVVLGVRLNLPRKLQALVNPEAVRPEDGDDRYINSVDLSSEFASSEC high_GC_Gram+ Propionibacterium_acnes_HL053PA2 Propionibacterium_acnes_HL053PA2 ADZB01000034 32512..34044 Weinstock,G.,_Sodergren,E.,_Clifton,S.,_Fulton,L.,_Fulton,B.,_Courtney,L.,_Fronick,C.,_Harrison,M.,_Strong,C.,_Farmer,C.,_Delahaunty,K.,_Markovic,C.,_Hall,O.,_Minx,P.,_Tomlinson,C.,_Mitreva,M.,_Hou,S.,_Chen,J.,_Wollam,A.,_Pepin,K.H.,_Johnson,M.,_Bhonagiri,V.,_Zhang,X.,_Suruliraj,S.,_Warren,W.,_Chinwalla,A.,_Mardis,E.R._and_Wilson,R.K. NA 0:1533 Propionibacterium_acnes_HL053PA2_(No_16S_rRNA_gene_available)_is_amember_of_the_Actinobacteria_division_of_the_domain_bacteria_andhas_been_isolated_from_the_skin.This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.The_bacterial_isolate_and_source_DNA_was_provided_by_Huiying_Li,Ph.D._Department_of_Molecular_and_Medical_Pharmacology,_Universityof_California,_Los_Angeles,_4339_CNSI,_570_Westwood_Plaza,_Building114,_Los_Angeles,_CA_90095,_USA._This_project_is_funded_by_thefollowing_grant_support:_Metagenomic_study_of_the_human_skinmicrobiome_associated_with_acne_(1UH2AR057503).Coding_sequences_were_predicted_using_GeneMark_v3.3_and_Glimmer2v2.13._Intergenic_regions_not_spanned_by_GeneMark_and_Glimmer2_wereblasted_against_NCBIs_non-redundant_(NR)_database_and_predictionsgenerated_based_on_protein_alignments._tRNA_genes_were_determinedusing_tRNAscan-SE_1.23_and_non-coding_RNA_genes_by_RNAmmer-1.2_andRfam_v8.0._Gene_names_are_generated_at_the_contig_level_and_may_notnecessarily_reflect_any_known_order_or_orientation_between_contigs.The_National_Human_Genome_Research_Institute_(NHGRI),_NationalInstitutes_of_Health_(NIH)_Acne_Demonstration_Project_is_fundingthe_sequence_characterization_of_the_Propionibacterium_acnesHL053PA2_genome.Annotation_was_added_to_the_contigs_in_December_2010.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Velvet_v._0.7.57Genome_Coverage_::_68.1xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 15-DEC-2010 Propionibacterium_acnes_HL053PA2_P_acnesHL053PA2-1.0_Cont521.6,_whole_genome_shotgun_sequence. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_E6DWU0_PROAC.gb Propionicibacterium 301752420 Submitted_(10-SEP-2010)_Genome_Sequencing_Center,_Washington_University_School_of_Medicine,_4444_Forest_Park,_St._Louis,_MO_63108,_USA NA ADZB01000034 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1533 NA genomic_DNA NA HL053PA2 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 765067 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium Direct_Submission NA ADZB01000034.1 ATGGCCAGCTCAGACGACATCATCACCATCAAGGAGATGGGTGACAAGAGACGATGGTGGCAGTACTTAGACGCCACCAAATGGAAGCTCTTCATTGCAGCCCTTATTGGTGTCACCCTTGACGGCTACGACTTCGTGCTCATCACCTTGGCACTGCCAGAGATCAAGGCGGCCTTTGGCCTCACCCTGGTACAAAGCGCAGCGTTGGTGTCAGCAGCCTTCATCACACGGTGGCTGGGCGGACTAATCCTGGGCGGTGTTGGCGACAGGTTCGGACGCAAGCCAGCCATGATCATCGCAACCGTATTGTTCGCGATCGGCTCGCTCCTCATGGGATTTTCGCCGAACTTCATGTTCCTGTTCATTATGCGCATGGTCGTCGGCTTCGCGATGGCGGGAGAGTACGGGTCATCGGCAACATATGTCATCGAATCGTGGCACCCCCGAATCCGCGGCAAGGCATCGTCATTTCTGTTGTCAGGCTATGCGATAGGCGCCATCCTGGCCGTCCAGGTCGACAAGTACTTAGTCCCATGGGTCGACAGTTGGCATGCCGGATGGGGTTGGAGAGCCCTGTTCATCACCGGAATCGTGCCCATCGCAGTGGCACTGTACATGCGACGTCGCCTCCCCGAAGCTAGCGACTGGGAAACGGCAAAGTCACGCGAGCGGGAAAAATCGTCCGAATCACGTGACGCTTTCCAGGTGCTGTTCAGCGGAAGGCGCATGTCACTAAACATCACACTCGTCATCGCGGCAATGGCAGGTCTACTAGCCATCTTCGCCCTCAACATCCTGCCTTTCTGGGGCGTCCTCGCCGTGGCCATAGCCTGTGGCGCCATCTTCGTGTGTCTCATCGTGCAATTTGATCCTCGACGCTGGGTCATCGGCATCGGAATCATGATCGTTATCCTTTCTGCCTTCATGTATGGATGGCCCATCCTTGGACTCTTGCCTACATACCTCACGGGTGCAGGATATGCAGCTTCCACCGTCGCCAATCTGCTAACGATCGCACAATTCGGCAACATGATTGGTTACTTTGTCACAGGCTTCATGGGAGACTGGATAGGAATGCGAAAGTGGTACTTCACGAGCATTCTCATAGCGCAGATCATCGTGTTTCCGCTATTCTTTGCGGGAATTAAGTCGGCATGGCTCATTGGGCTTCTACTGTTCTTCAACCAGTTGTTCGGCCAAGGTGTTTCAGGGCTAGCCCCTCGGTGGGTGTCGAGCTATTTCCCCGTCGAGCAGCGAGCTGCCGGAGTGGGGTTCATCTACAATGTCGGAGCTCTCGGCGGTGCAATTGGACCATTTGTGGGCGCCTCGCTGGCTAAGAGCCACGGTCTGGGATCGGCTCTAGGGGTGTTGTCCGTGGGCTTCGGCCTGATTGTTGTCCTTGGCGTTAGGCTGAATCTGCCACGCAAGCTACAGGCTCTCGTCAACCCAGAGGCCGTCCGGCCCGAGGACGGAGATGACCGGTACATCAACAGCGTCGACCTTTCGAGCGAGTTTGCATCCAGCGAGTGCTAA > 903 PPA2120 NA dicarboxylate_transport_protein_/_alpha-ketoglutarate_permease YP_056785.1 11 MYTYTTFAAYFEDQFFSPDDPHKSIYIYAIFWATFIMRPFGSWFFGRWADRHGRRSALTMAVTIMAVGSLVISVLPTRGTIGVGAPILLLICRIVQGFATGGEYGTSATYMSEASTKGHRGFFSSFQYFTLVGGLVTAQAVLLLLSSLMSEATIHVWGWRIPFFIGGVAALIVFFMQKTMDESLSTEHLKSVRSGEDSSSGSLKELFENHLGNFLLAFTIASGGTLCFYVYTVNAPNIVHSTFSSTPMAATAVNLIALFILMLGQPLGGLIGDRIGRKPVLLFFAAGGVVYTWVLVTCLSHARKPVTAFLMLLMGYIFLTGYTSISAVVKSDLFPTDVRALGVGMAHGFANSLFGGTAPLIYVWAKQGDAIPAFIGYVTALSAVTFLTILFGLTTRTASHLDAPTKGGHD high_GC_Gram+ Propionibacterium_acnes_KPA171202 Propionibacterium_acnes_KPA171202 NC_006085 2293195..2294427 Bruggemann,H.,_Henne,A.,_Hoster,F.,_Liesegang,H.,_Wiezer,A.,_Strittmatter,A.,_Hujer,S.,_Durre,P._and_Gottschalk,G. NA 0:1233 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE017283.COMPLETENESS:_full_length. NA 21-JAN-2012 Propionibacterium_acnes_KPA171202,_complete_genome. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_acnes_Q6A5Y6_PROAC.gb Propionicibacterium 50841496 Science_305_(5684),_671-673_(2004) NA NC_006085 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 15286373 1233 NA genomic_DNA NA KPA171202 NA Propionicibacterium_acnes NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA NA NA NA NA prokaryotes NA 267747 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium The_complete_genome_sequence_of_Propionibacterium_acnes,_a_commensal_of_human_skin NA NC_006085.1 GTGTACACGTACACGACGTTCGCAGCCTATTTCGAGGACCAGTTCTTCTCGCCTGACGACCCGCACAAGAGCATCTACATCTACGCGATTTTCTGGGCGACCTTCATCATGAGGCCGTTCGGATCGTGGTTCTTCGGTCGCTGGGCCGACCGTCACGGACGCCGGTCCGCCCTCACCATGGCAGTGACAATCATGGCCGTCGGCTCCCTCGTCATCTCCGTGTTGCCCACCCGAGGCACCATCGGAGTGGGGGCCCCGATCCTGTTGCTCATCTGTCGTATCGTGCAAGGATTCGCCACAGGAGGTGAGTACGGCACCTCGGCCACCTACATGTCAGAAGCCTCCACCAAGGGACACCGCGGTTTCTTCTCCTCGTTCCAGTACTTCACCCTCGTGGGTGGTTTAGTGACAGCCCAGGCCGTCCTACTCCTGCTGTCCTCCCTCATGAGTGAGGCCACGATCCATGTCTGGGGATGGCGCATCCCATTCTTCATCGGTGGCGTCGCAGCGCTCATCGTTTTCTTCATGCAGAAGACGATGGATGAATCGCTGAGTACCGAACATCTTAAATCCGTGCGGTCGGGTGAGGACAGCTCGTCAGGAAGTCTGAAAGAGCTCTTTGAAAACCATCTCGGTAACTTCCTCCTGGCTTTTACCATCGCCAGCGGCGGTACCCTGTGCTTCTATGTCTACACCGTCAATGCACCGAATATCGTCCATTCGACTTTCAGCAGCACTCCGATGGCGGCAACCGCGGTCAACCTCATCGCCCTATTCATCCTCATGCTCGGGCAACCGCTGGGAGGCCTCATCGGTGACCGGATCGGACGCAAACCGGTGTTGCTCTTCTTTGCCGCCGGTGGAGTCGTTTATACCTGGGTTCTCGTGACCTGTCTGTCGCATGCCCGCAAGCCCGTAACTGCATTCCTCATGCTGCTCATGGGCTATATCTTCCTTACCGGATATACCTCGATCTCCGCAGTTGTGAAGTCCGACCTTTTCCCAACCGATGTCAGGGCGCTGGGTGTTGGGATGGCCCATGGTTTCGCGAATTCCCTGTTCGGCGGCACGGCTCCACTCATTTACGTGTGGGCGAAACAGGGTGACGCGATCCCCGCCTTCATCGGGTATGTGACGGCGCTGTCCGCGGTCACCTTCCTTACGATCCTCTTCGGGCTGACCACACGGACTGCGTCACACCTGGATGCGCCGACGAAGGGTGGGCACGACTAA > 904 PFREUD_08830 NA transporter,_MFS_superfamily_protein YP_003687847.1 11 MRLSRTVFVVTQTHAEDPAHPGPAPVNHKGRIIVSSLVGTTIEFYDFYIYATAAISVFPLLFFHSSGGNGALLASLATFGVAFVARPLGSVLFGHFGDRAGRKATLLASLLTMGVATVLIGLLPTYTSIGIVAPMLLALMRFCQGLGLGGEWSGASLLAGENSRAGKRGFDSMWPQLGAPFGFLLANGFFFMLTMTMNYDSTQATTNHAFLAWGWRLPFLFSAVIVALGLYVRFKLHETPSFQRTKDRGEVVKAPVLEVFRSSWRDLIRGTFIMLATYTLFYLMTTWILSYAIGKVALGYLGISYHSFLVVQLITICAFALTIPISGLLGDKLGRKRFLLVVTVAIIAFGLSFRFFLDPARMGTGSSANLVLMTVFMLIGMALMGLTFGIQSALLPELFPTNVRYTGSAISYNVSSILGAAVAPFIAAWLAARFGPGSVGLYLVAMAVLTLIALITTHETRDLDLDAIGRDKPAGEVPESVLVDA high_GC_Gram+ Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 NC_014215 1001614..1003071 Falentin,H.,_Deutsch,S.M.,_Jan,G.,_Loux,V.,_Thierry,A.,_Parayre,S.,_Maillard,M.B.,_Dherbecourt,J.,_Cousin,F.J.,_Jardin,J.,_Siguier,P.,_Couloux,A.,_Barbe,V.,_Vacherie,B.,_Wincker,P.,_Gibrat,J.F.,_Gaillardin,C._and_Lortal,S. NA 0:1458 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FN806773.COMPLETENESS:_full_length. NA 26-JAN-2012 Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1_chromosome,_complete_genome. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_freudenreichii_D7GCZ8_PROFC.gb Propionicibacterium 297625198 PLoS_ONE_5_(7),_E11748_(2010) NA NC_014215 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 20668525 1458 NA genomic_DNA NA CIRM-B1AI NA Propionicibacterium_freudenreichii NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA Propionicibacterium_freudenreichii_subsp._shermanii NA NA NA prokaryotes NA 754252 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium The_complete_genome_of_Propionibacterium_freudenreichii_CIRM-BIA1,_a_hardy_actinobacterium_with_food_and_probiotic_applications NA NC_014215.1 GTGAGATTGTCACGTACCGTCTTCGTCGTGACGCAAACACATGCTGAAGACCCCGCCCACCCGGGTCCTGCCCCGGTGAACCACAAGGGCCGCATCATCGTCTCCTCCCTGGTGGGAACGACGATTGAGTTCTACGACTTCTACATCTACGCAACGGCCGCCATCTCGGTGTTCCCGCTGCTGTTCTTCCACTCCTCGGGTGGCAATGGCGCCCTGCTGGCCTCGCTGGCCACCTTCGGCGTCGCCTTCGTGGCGCGCCCCCTCGGATCGGTGCTGTTCGGCCACTTCGGTGACCGCGCCGGACGCAAGGCGACCCTGTTGGCGTCGCTGCTCACCATGGGGGTGGCGACCGTGCTCATCGGGCTGCTGCCCACCTACACGTCCATCGGGATCGTCGCGCCGATGCTGCTCGCCCTGATGCGCTTCTGCCAGGGCCTCGGCCTGGGCGGCGAATGGTCGGGCGCGTCGCTGCTCGCGGGGGAGAACTCGCGCGCCGGCAAGCGTGGCTTCGACTCCATGTGGCCGCAGCTGGGTGCCCCGTTCGGGTTCCTGCTGGCCAACGGATTCTTCTTCATGCTCACCATGACGATGAACTACGACTCCACCCAGGCCACCACCAACCATGCCTTCCTGGCCTGGGGTTGGCGCCTGCCCTTCCTCTTCTCGGCCGTCATCGTCGCGTTGGGCCTGTACGTGCGCTTCAAGCTGCACGAGACCCCGTCGTTCCAGCGCACCAAGGATCGCGGCGAGGTGGTGAAGGCCCCGGTGCTGGAGGTCTTCCGCAGCTCGTGGCGCGACCTGATCCGTGGCACCTTCATCATGCTGGCCACCTACACGCTGTTCTACCTGATGACCACCTGGATCCTCTCCTACGCCATCGGCAAGGTGGCGCTCGGCTACCTGGGCATCAGCTACCACTCGTTCCTGGTGGTGCAGCTGATCACCATCTGCGCCTTTGCTCTGACCATTCCGATCTCGGGCCTGCTCGGCGACAAGCTTGGGCGCAAGCGCTTCCTGCTCGTGGTCACGGTGGCCATCATCGCCTTCGGCCTGAGCTTCAGGTTCTTCCTCGATCCCGCCAGGATGGGCACCGGCAGCTCGGCCAACCTGGTGCTCATGACGGTCTTCATGCTCATTGGCATGGCCCTGATGGGCCTCACCTTCGGCATCCAGTCCGCGCTGCTGCCCGAGCTGTTCCCCACCAATGTGCGCTACACCGGTTCGGCGATCTCCTACAACGTGTCGTCGATCCTCGGCGCCGCGGTGGCACCGTTCATTGCGGCCTGGCTCGCGGCGCGCTTCGGGCCCGGCAGCGTCGGCCTCTACCTGGTCGCCATGGCCGTGTTGACGCTCATCGCCCTGATCACCACCCACGAGACGCGCGACCTCGACCTTGACGCCATCGGCCGCGACAAGCCCGCCGGCGAGGTGCCCGAATCGGTGCTCGTCGACGCCTGA > 905 PFREUD_19110 transporter_in_the_P.freudenreichii_iol_operon myo-inositol_transporter_IolT3 YP_003688823.1 11 MSENTASVGTYTPTKIKELVAEIPASGKKRSLGAIAAVATLGSLLFGYDTGVIAGALPYMYLPTEAGGLALKTWEEGLVGALLCIGAAVGASVGGRLSDKYGRRHNIIMLAIIFFIGAIGCTLSLNVWMLFAFRVVLGFAVGGASATVPVFLSETAPKRIRGILVAVDQFMIVGGQLLAYSMNAVLAQYHGGPEAIVSNDPSGTYASGSTQVWDVLQNIVGLTVSGGNGMTWRYMLVLASIPAIALFFGIRAMPESARWYASHMRIPEAIGALKRVREDGKDDVAHEIDEMVEVHRAEAKQERWNFSQIWSTKWTRRLLLIGMGLGIADQLTGINTAMYYMPKVLHAAGFSMTDSISLNVVSGAVSLIGSGVGFWLIAKFARRHVGIYQSAMIVFFLTSLAAVFFFFIQPHQQSDGTIVGAPSFAPMLVLILVCLFVFAKQSGTVNWVLFSEIFPMKIRGTALGIAVGTLWIVNAIVAWVFPMMMKGFGGALTYIIFAAFNVCTLFFYLKIVPETKYHSLEELELRFQKDYS high_GC_Gram+ Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 NC_014215 2057673..2059271 Falentin,H.,_Deutsch,S.M.,_Jan,G.,_Loux,V.,_Thierry,A.,_Parayre,S.,_Maillard,M.B.,_Dherbecourt,J.,_Cousin,F.J.,_Jardin,J.,_Siguier,P.,_Couloux,A.,_Barbe,V.,_Vacherie,B.,_Wincker,P.,_Gibrat,J.F.,_Gaillardin,C._and_Lortal,S. NA 0:1599 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FN806773.COMPLETENESS:_full_length. NA 26-JAN-2012 Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1_chromosome,_complete_genome. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_freudenreichii_D7GFU2_PROFC.gb Propionicibacterium 297625198 PLoS_ONE_5_(7),_E11748_(2010) NA NC_014215 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 20668525 1599 NA genomic_DNA NA CIRM-B1AI NA Propionicibacterium_freudenreichii NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA Propionicibacterium_freudenreichii_subsp._shermanii NA NA NA prokaryotes NA 754252 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium The_complete_genome_of_Propionibacterium_freudenreichii_CIRM-BIA1,_a_hardy_actinobacterium_with_food_and_probiotic_applications NA NC_014215.1 ATGAGCGAGAACACGGCGTCGGTGGGGACGTACACACCGACGAAGATCAAGGAGCTGGTGGCCGAGATCCCGGCCTCCGGCAAGAAGCGGTCGCTGGGGGCGATCGCAGCAGTAGCAACTCTTGGTTCACTGCTCTTCGGCTATGACACCGGCGTGATCGCCGGTGCACTGCCCTATATGTACCTTCCCACCGAGGCCGGCGGCCTCGCCCTGAAGACCTGGGAGGAGGGCCTGGTCGGCGCACTGTTGTGCATCGGCGCAGCAGTCGGCGCAAGCGTCGGCGGTCGGTTGTCCGACAAGTACGGACGCCGCCACAACATCATCATGCTGGCGATCATCTTCTTCATCGGCGCCATCGGCTGCACGCTGTCACTGAATGTGTGGATGCTGTTCGCCTTCCGCGTGGTGCTCGGCTTCGCCGTGGGCGGTGCGTCAGCCACCGTGCCGGTCTTCCTGTCGGAGACCGCACCAAAGCGCATCCGCGGCATCCTGGTGGCCGTCGACCAGTTCATGATCGTCGGCGGCCAGCTCCTCGCGTACTCGATGAACGCGGTGCTGGCGCAGTACCACGGTGGCCCCGAGGCCATCGTCTCGAATGACCCGTCGGGCACCTACGCCTCGGGCAGCACCCAGGTGTGGGACGTGCTGCAGAACATCGTCGGCCTGACCGTCTCCGGCGGCAACGGCATGACCTGGCGCTACATGCTCGTGCTGGCATCGATCCCGGCCATTGCCCTGTTCTTCGGCATCCGTGCCATGCCCGAGTCGGCCCGTTGGTACGCCTCGCACATGCGCATCCCCGAGGCCATCGGCGCCCTCAAGCGCGTCCGTGAGGACGGCAAGGACGATGTGGCCCATGAGATCGACGAGATGGTCGAGGTGCACCGCGCCGAGGCCAAGCAGGAACGCTGGAACTTCTCGCAGATCTGGTCGACCAAGTGGACGCGGCGCCTGTTGCTCATCGGCATGGGCCTGGGCATCGCCGACCAGCTGACCGGCATCAACACGGCCATGTACTACATGCCGAAGGTGCTGCACGCGGCCGGCTTCTCGATGACCGACTCGATCAGCCTCAACGTGGTCTCCGGTGCCGTGTCACTGATCGGCTCCGGCGTCGGGTTCTGGTTGATCGCCAAGTTCGCCCGCCGCCATGTGGGCATCTACCAGTCGGCGATGATCGTGTTCTTCCTCACCTCGCTGGCCGCGGTGTTCTTCTTCTTCATCCAGCCGCACCAGCAGTCCGACGGCACCATCGTCGGCGCCCCGAGCTTCGCCCCGATGCTCGTGTTGATCCTGGTCTGCCTGTTCGTCTTCGCCAAGCAGTCCGGCACGGTGAACTGGGTGTTGTTCTCGGAGATCTTCCCGATGAAGATCCGCGGCACTGCACTGGGTATCGCCGTGGGCACCCTGTGGATCGTCAACGCGATCGTCGCCTGGGTGTTCCCGATGATGATGAAGGGCTTCGGCGGTGCGCTGACCTACATCATCTTCGCGGCATTCAATGTGTGCACGCTGTTCTTCTACCTGAAGATCGTCCCCGAGACGAAGTACCACAGCCTCGAGGAACTCGAGCTGAGGTTCCAGAAGGACTACAGCTGA > 906 PFREUD_19120 NA hypothetical_protein YP_003688824.1 11 MGSGQVRVARIRVTIALAGALTGAVYGGLCATLVAAPRGAVLRVATVSGAALLGVIVAYLSARLIGRRLQGVAATLFVVAGGALTPLAAPIHWPGLLGPALAGLGAGVLTIVAPLLARELAANSRHQVAGSTGFGLPLGLGATQLVAVAAVALELPVERLVWPTIGALALLVGILLATLPESPVWLATHRTMERSYAAMVRLFGTLEASIELDWVLMARDMAAEERRLRWRDLRLPGMKRTVAAGAVLALVREAPLGLAALVLVPAVAGELASPRAATVALLVLGLTATGVGVTTAVHRFRGFGFARLIAGLALALVGLSLMTLATHVHGGGALVLVLVATPALAVAQFVLVTPAARGSVEPLVPPWLVRAHTTSTHVLAAAARVICLTAPAALVATRGPATTAMVATLVEIVVLIVLTAALPQALHRTA high_GC_Gram+ Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 NC_014215 2059437..2060729 Falentin,H.,_Deutsch,S.M.,_Jan,G.,_Loux,V.,_Thierry,A.,_Parayre,S.,_Maillard,M.B.,_Dherbecourt,J.,_Cousin,F.J.,_Jardin,J.,_Siguier,P.,_Couloux,A.,_Barbe,V.,_Vacherie,B.,_Wincker,P.,_Gibrat,J.F.,_Gaillardin,C._and_Lortal,S. NA 0:1293 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FN806773.COMPLETENESS:_full_length. NA 26-JAN-2012 Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1_chromosome,_complete_genome. NA Propionicibacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Propionibacterium_freudenreichii_D7GFU3_PROFC.gb Propionicibacterium 297625198 PLoS_ONE_5_(7),_E11748_(2010) NA NC_014215 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 20668525 1293 NA genomic_DNA NA CIRM-B1AI NA Propionicibacterium_freudenreichii NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Propionicibacterineae NA Propionicibacterium_freudenreichii_subsp._shermanii NA NA NA prokaryotes NA 754252 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Propionibacterineae,_Propionibacteriaceae,_Propionibacterium The_complete_genome_of_Propionibacterium_freudenreichii_CIRM-BIA1,_a_hardy_actinobacterium_with_food_and_probiotic_applications NA NC_014215.1 ATGGGCTCAGGCCAGGTGCGCGTGGCACGCATCCGCGTGACGATCGCGCTCGCCGGTGCGCTGACCGGTGCCGTCTACGGCGGCCTGTGCGCCACCCTGGTGGCGGCTCCCCGGGGCGCCGTGCTGCGGGTGGCCACGGTCTCGGGTGCCGCGCTGCTCGGCGTCATCGTGGCCTATCTGAGTGCCCGCCTGATCGGCCGACGGCTCCAGGGCGTTGCCGCGACGCTGTTCGTGGTGGCCGGTGGCGCGCTGACGCCGCTCGCCGCCCCCATCCACTGGCCCGGCCTGCTCGGCCCGGCTCTGGCCGGCCTGGGTGCCGGCGTGCTCACGATCGTCGCTCCCCTGCTGGCCCGGGAGCTGGCCGCCAACTCCCGGCACCAGGTGGCGGGCAGCACCGGCTTCGGGTTGCCCCTGGGGCTGGGTGCCACCCAGCTCGTGGCAGTGGCCGCGGTGGCCCTCGAACTGCCGGTCGAGCGACTGGTGTGGCCCACCATCGGGGCCCTGGCACTGCTGGTGGGCATCCTGCTGGCCACCCTGCCCGAGTCACCGGTGTGGCTGGCGACGCATCGCACGATGGAGCGCAGCTATGCGGCGATGGTGCGGCTGTTCGGCACCCTGGAGGCTAGCATCGAACTCGACTGGGTGCTGATGGCCCGCGACATGGCCGCCGAGGAACGCCGCCTGCGGTGGCGCGACCTCAGGCTGCCCGGCATGAAGCGCACCGTCGCCGCCGGCGCCGTGCTCGCCCTGGTGCGCGAGGCGCCCCTCGGTCTGGCAGCACTGGTGCTGGTGCCCGCGGTGGCGGGCGAACTCGCCTCGCCCCGGGCCGCCACCGTCGCACTGTTGGTGCTGGGCCTGACGGCGACGGGCGTCGGGGTGACCACCGCGGTGCACCGCTTCCGCGGATTCGGCTTTGCCCGCCTGATCGCCGGCCTGGCGCTGGCACTGGTGGGACTGTCCCTGATGACCTTGGCCACCCATGTCCACGGCGGCGGGGCGCTCGTGCTGGTGCTGGTCGCCACCCCGGCCCTGGCGGTGGCGCAGTTCGTGTTGGTGACCCCGGCGGCCCGGGGATCTGTGGAGCCGCTGGTGCCCCCGTGGCTCGTGCGGGCCCACACCACCTCAACCCATGTGCTGGCCGCCGCGGCCCGGGTGATCTGCCTCACCGCGCCGGCCGCCCTGGTGGCGACCAGGGGTCCCGCCACGACGGCCATGGTGGCCACGTTGGTGGAGATCGTCGTGCTCATCGTGCTCACGGCCGCCCTGCCGCAGGCCCTGCACCGCACTGCCTAG > 907 Patl_1970 TIGRFAM:_sugar_transporter;_PFAM:_General_substrate_transporter_major_facilitator_superfamily_MFS_1;_KEGG:_bth:BT0436_arabinose-proton_symporter sugar_transporter YP_661542.1 11 MNNQVRHVFFCAIVVAFGGFIFGLDAALISGTVRFISAEFALSDLQIGAVVSAPGFGVLFALLITGYICDKYGRRQALLIISVLYILSAVASVGAISFEMLVTARFVGGLAFTSLSVAAMYIGEIAPPKLRGKLVAMIQINIVIGLSAAYFANYMILKVSQLETDWVMSLGINTHTWRWMLGIEIIPAIVWLFLLITIPRSPRWLVMNNRLDEAKRVLHQFLNNEEVEKELVQIQHSVDLGDKHALSTAEAIKAMFGSKMRKAALIGLTMGVVQQITGINAIMFYAPTVFEQVGLGTNAAFFQALIVGLVSVLFTIAAVLLVDRLGRRPLVIYGLAAGTISLFMCHYAFSQATYILTPEQINAFTTEHGLASMQNMVSTAFSSDIEFKNMLQSVIGIEEFRRHEGQLMQMATNVNANMILLGVMGYIAAFHFSIGPVMWVLFSEIFPIAIRGTAIPMFALLASIVSYLVQQFFPWQLSHMGASDIFLFYAISGAIGFVILFKIMPETKNKTIEEIELDLDSTKDKASVV gamma_subgroup Pseudoalteromonas_atlantica_T6c Pseudoalteromonas_atlantica_T6c NC_008228 2390983..2392572 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Saunders,E.,_Brettin,T.,_Bruce,D.,_Han,C.,_Tapia,R.,_Gilna,P.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_Karls,A.C.,_Bartlett,D.,_Higgins,B.P._and_Richardson,P. NA 0:1590 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000388.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000130Source_DNA_and_bacteria_available_from_Anna_C._Karls(akarls@uga.edu)Contacts:_Anna_C._Karls_(akarls@uga.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 24-JAN-2012 Pseudoalteromonas_atlantica_T6c_chromosome,_complete_genome. NA Pseudoalteromonadaceae_Ivanova_et_al._2004 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudoalteromonas_atlantica_Q15UF0_PSEA6.gb Pseudoalteromonas_Gauthier_et_al._1995_emend._Ivanova_et_al._2002 109896332 Unpublished NA NC_008228 NA NA Alteromonadales_Bowman_and_McMeekin_2005 purple_photosynthetic_bacteria_and_relatives NA 1590 NA genomic_DNA NA T6c NA Pseudomonas_atlantica NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 342610 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Alteromonadales,_Pseudoalteromonadaceae,_Pseudoalteromonas Complete_sequence_of_Pseudoalteromonas_atlantica_T6c NA NC_008228.1 TTAGACCACGCTCGCTTTATCTTTTGTGCTGTCTAAATCGAGTTCAATTTCTTCAATCGTCTTATTCTTGGTTTCAGGCATGATCTTAAACAAGATCACGAAACCTATAGCACCACTGATAGCGTAAAATAAGAAGATGTCACTAGCCCCCATATGGCTTAACTGCCATGGGAAAAACTGCTGTACTAAATAACTCACAATACTAGCAAGCAATGCAAACATGGGAATGGCGGTTCCACGAATAGCGATTGGGAATATCTCTGAAAAGAGCACCCACATCACCGGCCCAATTGAGAAATGAAAAGCTGCTATATAACCCATGACGCCAAGTAGGATCATGTTTGCGTTCACATTAGTCGCCATTTGCATCAACTGGCCTTCATGGCGTCTAAATTCTTCGATACCAATAACCGACTGCAGCATATTCTTAAATTCAATATCAGATGAAAACGCAGTGGACACCATATTCTGCATGCTGGCTAAGCCATGCTCAGTGGTAAACGCGTTAATCTGCTCAGGGGTAAGGATATAAGTGGCCTGACTGAAAGCGTAGTGACACATAAATAGGCTAATAGTGCCCGCTGCAAGGCCGTAAATCACCAGTGGACGGCGGCCCAATCTATCGACTAACAACACTGCTGCTATGGTGAACAACACGCTGACCAAACCGACGATAAGTGCTTGGAAAAAGGCAGCATTGGTGCCCAAACCGACTTGCTCAAAGACCGTTGGGGCATAAAACATGATCGCGTTAATTCCGGTAATTTGTTGCACCACCCCCATGGTTAAACCGATTAATGCGGCTTTACGCATTTTGCTGCCAAACATGGCTTTTATGGCTTCAGCGGTGGATAAAGCGTGTTTATCGCCTAAATCGACGCTGTGCTGAATTTGAACCAGTTCTTTTTCGACCTCTTCGTTATTCAAAAACTGATGCAGTACACGCTTTGCTTCATCCAAACGATTGTTCATGACCAACCATCGAGGGCTTCTTGGGATCGTAATAAGTAAGAATAGCCATACGATGGCTGGGATAATCTCAATGCCGAGCATCCACCGCCAAGTATGGGTATTGATACCAAGAGACATGACCCAGTCGGTCTCTAATTGCGACACCTTTAATATCATGTAATTGGCAAAATAAGCGGCTGAGAGACCGATAACGATATTTATCTGGATCATGGCCACCAATTTACCGCGTAGTTTTGGCGGTGCAATTTCGCCAATATACATAGCCGCTACTGACAGCGACGTAAACGCAAGCCCGCCAACAAATCGAGCCGTAACCAACATCTCAAAGGAAATAGCACCAACAGACGCTACCGCAGACAATATATATAAAACAGAAATAATGAGCAGGGCTTGGCGGCGACCATATTTGTCACAAATATAGCCAGTAATGAGTAACGCAAATAAAACACCGAAACCAGGTGCACTGACCACAGCCCCAATTTGCAAGTCAGAGAGGGCAAACTCGGCGGAAATAAAGCGCACAGTGCCTGAGATAAGCGCGGCATCTAAACCAAAAATGAATCCTCCGAATGCCACTACGATTGCGCAAAAGAATACATGCCTAACTTGATTATTCAT > 908 PLES_12731 NA putative_major_facilitator_superfamily_transporter YP_002438879.1 11 MTEYATTPSYTVPATTPQEERKVIFASSLGTVFEWYDFFLYGALAAVISKQFFAGVNDTTAFIFALMAFAAGFLVRPFGALVFGRLGDMIGRKYTFLVTILLMGLSTFAVGLLPTYASIGVAAPIILVTLRMLQGLALGGEYGGAAIYVAEHAPANKRGSYTSWIQSTATLGLLLSLLVILACRQLTGDEFETWGWRLPFLLSIVLLGISTWIRLSMRESPAFLKMKAEGKVSKAPLRESFTQWGNLKVVLTALFSINAGQAVTFYTAQFYVLFFLTQVLKVDGGTANGLLIVALVLGAPFFIVAGWLSDRIGRKPVLLAGLLLATLFYFPLFKGLTHYANPAIDQASRQSPISVVADPATCTFQFDPVGKATFDSPCDKVKTFLVKAGLPYSTVAAPAGSDVRVRIGETEIAGFDAEAMAAAVKTAGYPQQADGSQVNKPMVIAIIFALVLISTLCYGPLAALMVELFPTRIRYSSLSLPYHIGNGWFGGFLPTVSFALVVYTGDIFYGLWYPVLITGGSLVCALLFLRETRHTDIHR gamma_subgroup Pseudomonas_aeruginosa_LESB58 Pseudomonas_aeruginosa_LESB58 NC_011770 1383276..1384895 Winstanley,C.,_Langille,M.G.,_Fothergill,J.L.,_Kukavica-Ibrulj,I.,_Paradis-Bleau,C.,_Sanschagrin,F.,_Thomson,N.R.,_Winsor,G.L.,_Quail,M.A.,_Lennard,N.,_Bignell,A.,_Clarke,L.,_Seeger,K.,_Saunders,D.,_Harris,D.,_Parkhill,J.,_Hancock,R.E.,_Brinkman,F.S._and_Levesque,R.C. NA 0:1620 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_FM209186.COMPLETENESS:_full_length. NA 25-JAN-2012 Pseudomonas_aeruginosa_LESB58_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_aeruginosa_B7V0Y4_PSEA8.gb RNA_similarity_group_I 218888746 Genome_Res._19_(1),_12-23_(2009) NA NC_011770 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19047519 1620 NA genomic_DNA NA LESB58 NA probable_synonym_or_variety:_"Pseudomonas_polycolor"_Clara_1930 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 557722 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas Newly_introduced_genomic_prophage_islands_are_critical_determinants_of_in_vivo_competitiveness_in_the_Liverpool_Epidemic_Strain_of_Pseudomonas_aeruginosa NA NC_011770.1 ATGACCGAGTACGCAACGACCCCTTCCTACACAGTGCCTGCGACCACGCCCCAGGAGGAGCGCAAGGTGATCTTCGCCTCCTCGCTGGGCACGGTCTTCGAGTGGTACGACTTCTTCCTCTACGGCGCCCTGGCGGCGGTGATCAGCAAGCAGTTCTTCGCCGGCGTCAACGACACCACGGCCTTCATCTTCGCCCTGATGGCCTTCGCCGCCGGCTTCCTGGTGCGGCCCTTCGGCGCGCTGGTGTTCGGCCGCCTGGGCGACATGATCGGGCGCAAGTACACCTTCCTGGTGACCATCCTGTTGATGGGGTTGTCGACCTTCGCCGTCGGCCTGCTGCCCACCTATGCCTCGATCGGGGTCGCCGCGCCGATCATCCTGGTCACCTTGCGCATGCTCCAGGGCCTGGCCCTGGGTGGCGAGTACGGCGGCGCGGCGATCTATGTCGCCGAGCACGCCCCGGCGAACAAGCGCGGTAGCTACACCAGTTGGATCCAGTCCACCGCGACCCTCGGCCTGTTGCTCTCGCTGCTGGTGATCCTGGCCTGTCGCCAGTTGACCGGCGACGAGTTCGAGACTTGGGGCTGGCGCCTGCCATTCCTGCTGTCCATCGTCCTGCTGGGCATCTCCACCTGGATCCGCCTGTCCATGCGCGAGTCGCCGGCGTTCCTCAAGATGAAGGCCGAGGGCAAGGTCAGCAAGGCGCCGCTGCGCGAGTCCTTCACCCAGTGGGGCAACCTGAAGGTGGTGCTGACCGCGCTGTTCAGCATCAATGCCGGCCAGGCGGTGACCTTCTACACGGCGCAGTTCTACGTGCTGTTCTTCCTTACCCAGGTGCTCAAGGTCGATGGCGGCACCGCCAACGGTCTGCTGATCGTCGCCCTGGTGCTTGGCGCGCCGTTCTTCATCGTCGCCGGCTGGCTGTCCGACCGCATCGGCCGCAAGCCGGTGCTGCTGGCCGGACTGTTGCTCGCCACGCTGTTCTACTTCCCGCTGTTCAAGGGCCTGACCCACTACGCCAACCCGGCCATCGACCAGGCCAGCCGGCAGTCGCCGATCAGCGTGGTGGCCGACCCGGCGACCTGCACTTTCCAGTTCGACCCGGTAGGCAAGGCGACCTTCGACAGCCCCTGCGACAAGGTCAAGACCTTCCTGGTCAAGGCCGGCCTGCCCTACTCGACGGTGGCGGCGCCCGCCGGCAGCGACGTCAGGGTGCGGATCGGCGAGACCGAGATCGCCGGCTTCGACGCCGAAGCGATGGCGGCCGCGGTGAAGACGGCAGGCTATCCGCAGCAGGCCGACGGCAGCCAGGTGAACAAGCCGATGGTGATCGCCATCATCTTCGCTCTGGTACTGATCTCCACCCTCTGCTATGGTCCGCTGGCGGCGCTGATGGTCGAACTGTTCCCGACCCGCATCCGCTATTCCTCGCTGTCCCTGCCGTACCATATCGGCAACGGCTGGTTCGGCGGCTTCCTGCCCACGGTCTCGTTCGCCCTGGTGGTGTACACCGGCGACATCTTCTACGGCCTCTGGTATCCGGTGCTGATCACCGGCGGTAGCCTGGTCTGCGCCTTGCTGTTCCTCCGCGAAACCCGCCATACCGACATCCACCGGTGA > 909 PLES_52731 NA putative_major_facilitator_superfamily_transporter YP_002442851.1 11 MFSPLVTFPALYTATLLMLAGSGLFTTYIGLRLTQEGAGDLWVGGLMASYYFGLVCGGKFGHKLIASFGHIRSYVACAGIATVTVLLHALVDQLEVWLLLRFITGAVMMNQYMVIESWLNEQAESHQRGKVFAGYMVAVDLGLVLGQGLLALSPTLDYKPLLLVAICFASCLIPLAMTRRVHPAKLVAAPLEVRFFWQRVPQALGTIFIAGLMVGAFYGLAPVYANRNGLDASQSSFFVGMCIVAGFCAQWPLGWLSDRLDRSWLIRGNAVLLCLASIPMWGLVTLPYWLLLANGFVTGMLLFTLYPLAVALANDHVEQPRRVALSAMLLTTYGVGACIGPLVAGALMRHFGPGLFYMLVSGYAVLLVFWVQPKRVTGEHRVDEAPLQHVAMPDTVSPMAATLDPRVEEVPEELVVEAPANIGRSDGEPDAGEKPAQS gamma_subgroup Pseudomonas_aeruginosa_LESB58 Pseudomonas_aeruginosa_LESB58 NC_011770 5814764..5816080 Winstanley,C.,_Langille,M.G.,_Fothergill,J.L.,_Kukavica-Ibrulj,I.,_Paradis-Bleau,C.,_Sanschagrin,F.,_Thomson,N.R.,_Winsor,G.L.,_Quail,M.A.,_Lennard,N.,_Bignell,A.,_Clarke,L.,_Seeger,K.,_Saunders,D.,_Harris,D.,_Parkhill,J.,_Hancock,R.E.,_Brinkman,F.S._and_Levesque,R.C. NA 0:1317 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_FM209186.COMPLETENESS:_full_length. NA 25-JAN-2012 Pseudomonas_aeruginosa_LESB58_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_aeruginosa_B7V1V0_PSEA8.gb RNA_similarity_group_I 218888746 Genome_Res._19_(1),_12-23_(2009) NA NC_011770 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19047519 1317 NA genomic_DNA NA LESB58 NA probable_synonym_or_variety:_"Pseudomonas_polycolor"_Clara_1930 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 557722 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas Newly_introduced_genomic_prophage_islands_are_critical_determinants_of_in_vivo_competitiveness_in_the_Liverpool_Epidemic_Strain_of_Pseudomonas_aeruginosa NA NC_011770.1 TCAGGACTGAGCGGGTTTCTCGCCGGCGTCCGGCTCGCCGTCGGAGCGGCCGATATTCGCCGGCGCCTCCACCACCAGCTCCTCCGGCACTTCCTCGACGCGCGGGTCGAGGGTGGCGGCCATCGGGCTGACCGTGTCCGGCATCGCCACGTGTTGCAGCGGCGCCTCGTCGACCCGGTGTTCGCCGGTGACGCGCTTGGGCTGCACCCAGAACACCAGCAGCACCGCGTAGCCGGACACCAGCATGTAGAACAGTCCCGGACCGAAGTGGCGCATCAGCGCGCCGGCCACCAGCGGACCGATACAGGCGCCGACCCCGTAGGTGGTCAGGAGCATCGCCGACAACGCGACCCGGCGCGGCTGCTCGACGTGGTCGTTGGCCAGCGCCACCGCCAGCGGATAGAGGGTGAACAGCAGCATGCCGGTAACGAACCCGTTGGCCAGCAGCAACCAGTACGGCAGCGTCACCAGCCCCCACATCGGGATCGAGGCCAGGCACAGCAGCACCGCATTGCCGCGGATCAGCCAACTGCGGTCGAGGCGGTCGGACAGCCAACCCAGCGGCCACTGCGCACAGAAGCCGGCGACGATGCACATGCCGACGAAGAAACTCGATTGCGAGGCATCCAGGCCGTTGCGGTTGGCGTAGACCGGCGCCAGGCCGTAGAAGGCGCCGACCATCAGGCCGGCGATGAAGATGGTGCCCAGCGCCTGCGGCACGCGCTGCCAGAAGAAACGCACTTCCAGCGGCGCGGCGACCAGCTTGGCCGGGTGCACGCGCCGGGTCATGGCCAGCGGGATCAGGCACGAGGCGAAGCAGATGGCGACCAGCAGCAGCGGCTTGTAGTCGAGGGTCGGGCTCAGCGCCAGCAGGCCCTGGCCGAGCACCAGGCCAAGGTCGACGGCGACCATGTAGCCGGCGAACACCTTGCCGCGCTGGTGGCTCTCGGCCTGCTCGTTGAGCCAGCTCTCGATCACCATGTACTGGTTCATCATCACCGCGCCGGTGATGAAGCGCAGCAGCAGCCAGACTTCCAGCTGATCGACCAGGGCATGCAGCAGCACGGTCACGGTGGCAATCCCGGCGCAAGCCACGTAGGAACGGATATGGCCGAAGCTGGCGATCAGCTTGTGTCCGAATTTTCCACCGCAGACCAGGCCGAAATAGTAGGACGCCATCAGCCCGCCGACCCACAGGTCGCCTGCGCCTTCCTGGGTCAGGCGCAGGCCGATGTAGGTGGTGAACAGGCCGGAGCCGGCCAGCATGAGCAGGGTGGCGGTGTAGAGCGCGGGAAAGGTGACGAGCGGGCTGAACAT > 910 PA39016_001680045 PA39016_001680045_identified_by_Glimmer3_with_a_raw_score_of_20.87._Gene_function_extrapolated_from_PLES_12311_(FM209186.1)_after_blastn_alignment_(99.77_percent_identity_over_a_1314_bp_alignment). putative_major_facilitator_superfamily_(MFS)_transporter EFQ40225.1 11 MTAATLAADAAPEPANSTTRVAVASFIGTAIEFYDFYVYATAAALVIGPVFFPQTSGTAQMLSAFLTFGIAFLARPLGSALFGHFGDRIGRKSTLVASLLLMGVSTTLIGVLPGYDSIGYWAPLLLCVLRFGQGLGLGGEWGGAALLATENAPAGKRAWFGMFPQLGPSIGFLAANGLFLALAMLLSEEQFRDWGWRIPFLLSAALVVVGLYVRLKLAETPVFAKAMAKHERVRLPIAELFAQHWRPTLLGALAMVVCYALFYISTVFSLSYGVASLGFSREEFLGLLCLAVLFMAAATPLSAWLSDRFGRKPVLLLGSLAAIASGFAMEPLLSQGSTFSVALFLCIELFLMGVTFAPMGALLPEIFPTHVRYTGASAAYNLGGILGASVAPYIAQKLVGIGGLGWVGGYVSAAALLSLLAVLCLKETRDNDLGAVS gamma_subgroup Pseudomonas_aeruginosa_39016 Pseudomonas_aeruginosa_39016 AEEX01000152 52055..53368 Stewart,R.M.,_Wiehlmann,L.,_Ashelford,K.E.,_Preston,S.J.,_Frimmersdorf,E.,_Campbell,B.J.,_Neal,T.J.,_Hall,N.,_Tuft,S.,_Kaye,S.B._and_Winstanley,C. NA 0:1314 Bacterium_available_from_Dr_Craig_Winstanley.Annotatin_was_added_to_the_contigs_in_October_2010.##Genome-Assembly-Data-START##Assembly_Method_::_Roche_Newbler_v._2.3Genome_Coverage_::_19.43xSequencing_Technology_::_454_FLX_Titanium##Genome-Assembly-Data-END## NA 02-NOV-2010 Pseudomonas_aeruginosa_39016_contig00168,_whole_genome_shotgun_sequence. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_aeruginosa_E2ZYJ6_PSEAE.gb RNA_similarity_group_I 307817380 J._Clin._Microbiol._49_(3),_993-1003_(2011) NA AEEX01000152 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21227987 1314 NA genomic_DNA NA 39016 NA probable_synonym_or_variety:_"Pseudomonas_polycolor"_Clara_1930 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 798130 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas Genetic_Characterization_Indicates_that_a_Specific_Subpopulation_of_Pseudomonas_aeruginosa_Is_Associated_with_Keratitis_Infections NA AEEX01000152.1 ATGACCGCCGCCACCCTCGCCGCCGACGCCGCTCCGGAACCGGCCAACTCGACCACCCGGGTCGCAGTCGCCAGCTTCATCGGCACCGCCATCGAATTCTACGATTTCTACGTCTATGCCACTGCCGCCGCCCTGGTGATCGGTCCGGTATTCTTCCCGCAGACATCCGGCACCGCGCAGATGCTCAGCGCCTTCCTCACCTTCGGCATCGCCTTCCTCGCCCGTCCGCTGGGCTCGGCGCTGTTCGGCCACTTCGGCGACCGCATCGGGCGCAAGTCGACCCTGGTCGCCTCGCTGCTGCTGATGGGGGTATCCACTACCCTGATCGGCGTCCTCCCCGGCTACGACAGCATCGGCTACTGGGCGCCGTTGCTGCTCTGCGTGCTGCGCTTCGGCCAGGGCCTCGGCCTCGGCGGCGAGTGGGGCGGCGCCGCGCTGCTGGCCACGGAGAACGCGCCGGCCGGCAAGCGCGCCTGGTTCGGCATGTTTCCCCAGCTCGGCCCGTCGATCGGCTTCCTCGCCGCCAACGGCCTGTTCCTGGCCCTGGCGATGCTGCTCAGCGAGGAGCAGTTCCGTGACTGGGGCTGGCGGATCCCGTTCCTGCTCAGCGCGGCGCTGGTCGTGGTCGGCCTCTACGTACGCCTGAAGCTGGCGGAAACCCCGGTGTTCGCCAAGGCCATGGCCAAGCACGAGAGGGTCCGCCTGCCGATCGCCGAGCTGTTCGCCCAGCACTGGCGGCCGACCCTGCTCGGCGCCCTGGCGATGGTGGTGTGTTATGCGCTGTTCTATATCTCCACGGTGTTCTCGCTGAGCTACGGGGTGGCCAGCCTCGGCTTCAGCCGCGAGGAGTTCCTTGGTCTGCTGTGCCTCGCGGTGCTCTTCATGGCCGCCGCCACGCCGCTGTCGGCCTGGCTCAGCGACCGCTTCGGACGCAAGCCGGTACTGCTGCTCGGCAGCCTGGCGGCGATCGCCTCCGGCTTCGCCATGGAGCCGCTGCTCAGCCAGGGCTCGACGTTCAGCGTCGCCCTGTTCCTCTGCATCGAGCTGTTCCTGATGGGGGTCACCTTCGCCCCGATGGGCGCGCTGCTGCCGGAAATATTCCCCACCCACGTGCGCTACACCGGCGCGTCGGCGGCCTACAACCTGGGCGGCATTCTCGGCGCCTCGGTGGCGCCCTATATCGCCCAGAAGCTGGTCGGCATCGGCGGCCTGGGCTGGGTCGGCGGCTACGTCTCCGCAGCGGCGCTGCTCAGCCTGCTGGCGGTGCTGTGCCTGAAGGAAACCCGCGACAACGACCTCGGCGCAGTGTCCTGA > 911 PA3749 Product_name_confidence:_class_3_(Function_proposed_based_on_presence_of_conserved_amino_acid_motif,_structural_feature_or_limited_sequence_similarity_to_an_experimentally_studied_gene) major_facilitator_superfamily_(MFS)_transporter NP_252438.1 11 MTAATLAADAAPEPANSTTRVAVASFIGTAIEFYDFYVYATAAALVIGPVFFPQTSGTAQMLSAFLTFGIAFLARPLGSALFGHFGDRIGRKSTLVASLLLMGVSTTLIGVLPGYDSIGYWAPLLLCVLRFGQGLGLGGEWGGAALLATENAPAGKRAWFGMFPQLGPSIGFLAANGLFLALAMLLSEEQFREWGWRIPFLLSAALVVVGLYVRLKLAETPVFAKAMAKHERVRLPIAELFAQHWRPTLLGALAMVVCYALFYISTVFSLSYGVASLGFSREEFLGLLCLAVLFMAAATPLSAWLSDRFGRKPVLLLGSLAAIASGFAMEPLLSQGSTFSVALFLCIELFLMGVTFAPMGALLPEIFPTHVRYTGASAAYNLGGILGASVAPYIAQKLVGIGGLGWVGGYVSAAALLSLLAVLCLKETRDNDLGAVS gamma_subgroup Pseudomonas_aeruginosa_PAO1 Pseudomonas_aeruginosa_PAO1 NC_002516 4201252..4202565 Winsor,G.L.,_Van_Rossum,T.,_Lo,R.,_Khaira,B.,_Whiteside,M.D.,_Hancock,R.E._and_Brinkman,F.S. NA 0:1314 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_AE004091.On_Jul_24,_2006_this_sequence_version_replaced_gi:15595198.-----------------------------------------------------------------This_represents_the_Sept_08,_2010_version_of_the_continuallyupdated,_reviewed,_Pseudomonas_aeruginosa_PAO1_genome_annotationfrom_PseudoCap_(see_http://www.pseudomonas.com_for_the_latestupdates_and_links_to_alternate_annotations)._This_update_includesupdated_base_pair_coordinates_and_new_features._PseudoCap_iscoordinated_by_Fiona_S.L._Brinkman_(Simon_Fraser_University,Canada)_and_Robert_E.W._Hancock_(University_of_British_Columbia,Canada)_with_database_development_by_Geoff_Winsor_(Simon_FraserUniversity)._We_welcome_submission_throughwww.pseudomonas.com_of_any_proposed_changes.protein_name_confidence_is_used_to_rate_our_confidence_of_theaccuracy_of_the_protein_name.class_1:_Function_experimentally_demonstrated_in_P._aeruginosa.class_2:_Function_of_highly_similar_gene_experimentallydemonstrated_in_another_organism_(and_gene_context_consistent_interms_of_pathways_its_involved_in,_if_known).class_3:_Function_proposed_based_on_presence_of_conserved_aminoacid_motif,_structural_feature_or_limited_sequence_similarity_to_anexperimentally_studied_gene.class_4:_Homologs_of_previously_reported_genes_of_unknown_function,or_no_similarity_to_any_previously_reported_sequences.------------------------------------------------------------------.COMPLETENESS:_full_length. NA 20-JAN-2012 Pseudomonas_aeruginosa_PAO1_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_aeruginosa_Q9HXP5_PSEAE.gb RNA_similarity_group_I 110645304 Nucleic_acids_Res._37_(DATABASE_ISSUE),_D483-D488_(2009) NA NC_002516 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18978025 1314 NA genomic_DNA NA PAO1 NA probable_synonym_or_variety:_"Pseudomonas_polycolor"_Clara_1930 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 208964 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas Pseudomonas_Genome_Database:_facilitating_user-friendly,_comprehensive_comparisons_of_microbial_genomes NA NC_002516.2 ATGACCGCCGCCACCCTCGCCGCCGACGCCGCTCCGGAACCGGCCAACTCGACCACCCGGGTCGCAGTCGCCAGCTTCATCGGCACCGCCATCGAGTTCTACGATTTCTACGTCTATGCCACTGCCGCCGCCCTGGTGATCGGTCCGGTATTCTTCCCGCAGACATCCGGCACCGCGCAGATGCTCAGCGCCTTCCTCACCTTCGGCATCGCCTTCCTCGCCCGTCCGCTGGGCTCGGCGCTGTTCGGCCACTTCGGCGACCGCATCGGGCGCAAGTCGACCCTGGTCGCCTCGCTGCTGCTGATGGGGGTATCCACCACCCTGATCGGCGTCCTCCCCGGCTACGACAGCATCGGCTACTGGGCGCCGTTGCTGCTCTGCGTGCTGCGCTTCGGCCAGGGCCTCGGCCTCGGCGGCGAGTGGGGCGGCGCCGCGCTGCTGGCCACGGAGAACGCGCCGGCCGGCAAGCGCGCCTGGTTCGGCATGTTTCCCCAGCTCGGCCCGTCGATCGGCTTCCTCGCCGCCAACGGCCTGTTCCTGGCCCTGGCGATGCTGCTCAGCGAGGAGCAGTTCCGTGAGTGGGGCTGGCGGATCCCGTTCCTGCTCAGCGCGGCGCTGGTCGTGGTCGGCCTCTACGTACGCCTGAAGCTGGCGGAAACCCCGGTGTTCGCCAAGGCCATGGCCAAGCACGAGAGGGTCCGCCTGCCGATCGCCGAGCTGTTCGCCCAGCACTGGCGGCCGACCCTGCTCGGCGCCCTGGCGATGGTGGTGTGTTATGCGCTGTTCTATATCTCCACGGTGTTCTCGCTGAGCTACGGGGTGGCCAGCCTCGGCTTCAGCCGCGAGGAGTTCCTTGGTCTGCTGTGCCTCGCGGTGCTCTTCATGGCCGCCGCCACGCCGCTGTCGGCCTGGCTCAGCGACCGCTTCGGACGCAAGCCGGTACTGCTGCTCGGCAGCCTGGCGGCGATCGCCTCCGGCTTCGCCATGGAGCCGCTGCTCAGCCAGGGCTCGACGTTCAGCGTCGCCCTGTTCCTCTGCATCGAGCTGTTCCTGATGGGGGTCACCTTCGCCCCGATGGGCGCGCTGCTGCCGGAAATATTCCCCACCCACGTGCGCTACACCGGCGCGTCGGCGGCCTACAACCTGGGCGGCATTCTCGGCGCCTCGGTGGCGCCCTATATCGCCCAGAAGCTGGTCGGCATCGGCGGCCTGGGCTGGGTCGGCGGCTACGTCTCCGCAGCGGCGCTGCTCAGCCTGCTGGCGGTGCTGTGCCTGAAGGAAACCCGCGACAACGACCTCGGCGCAGTGTCCTGA > 912 PA0229 Product_name_confidence:_class_2_(High_similarity_to_functionally_studied_protein) dicarboxylic_acid_transporter_PcaT NP_248920.1 11 MTAPVHQYSNEERRKRIFAIVGASSGNLVEWFDFYVYAFCAIYFAPAFFPSDNPTVQLLNTAGVFAAGFLMRPIGGWMFGRIADKHGRKTAMLISVVMMCAGSLAIACMPTYASIGTLAPALLLLARMFQGLSVGGEYGTSATYMSEVALKGQRGFFASFQYVTLIGGQLLAVLVVVILQQLLSEDELRAWGWRIPFVIGAITAVIALWLRRSLNETASKSTLERKESGTFAELFKHKRAFFTVLGFTAGGSLIFYTFTTYMQKYLVNTAGMSAKTASAVMTFALLAYMLMQPLFGMLSDRIGRKTSMLWFGTLGTLCTLPILLALKTVSSPYMAFFLIILALAIVSLYTSISGLIKAEMFPPEVRALGVGVSYAVGNAIFGGSAEYVALGLKSVGMENVFYWYVSAMCLLALLVCVSLPDLRKVSYLNDEP gamma_subgroup Pseudomonas_aeruginosa_PAO1 Pseudomonas_aeruginosa_PAO1 NC_002516 258463..259761 Winsor,G.L.,_Van_Rossum,T.,_Lo,R.,_Khaira,B.,_Whiteside,M.D.,_Hancock,R.E._and_Brinkman,F.S. NA 0:1299 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_AE004091.On_Jul_24,_2006_this_sequence_version_replaced_gi:15595198.-----------------------------------------------------------------This_represents_the_Sept_08,_2010_version_of_the_continuallyupdated,_reviewed,_Pseudomonas_aeruginosa_PAO1_genome_annotationfrom_PseudoCap_(see_http://www.pseudomonas.com_for_the_latestupdates_and_links_to_alternate_annotations)._This_update_includesupdated_base_pair_coordinates_and_new_features._PseudoCap_iscoordinated_by_Fiona_S.L._Brinkman_(Simon_Fraser_University,Canada)_and_Robert_E.W._Hancock_(University_of_British_Columbia,Canada)_with_database_development_by_Geoff_Winsor_(Simon_FraserUniversity)._We_welcome_submission_throughwww.pseudomonas.com_of_any_proposed_changes.protein_name_confidence_is_used_to_rate_our_confidence_of_theaccuracy_of_the_protein_name.class_1:_Function_experimentally_demonstrated_in_P._aeruginosa.class_2:_Function_of_highly_similar_gene_experimentallydemonstrated_in_another_organism_(and_gene_context_consistent_interms_of_pathways_its_involved_in,_if_known).class_3:_Function_proposed_based_on_presence_of_conserved_aminoacid_motif,_structural_feature_or_limited_sequence_similarity_to_anexperimentally_studied_gene.class_4:_Homologs_of_previously_reported_genes_of_unknown_function,or_no_similarity_to_any_previously_reported_sequences.------------------------------------------------------------------.COMPLETENESS:_full_length. NA 20-JAN-2012 Pseudomonas_aeruginosa_PAO1_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_aeruginosa_Q9I6Q9_PSEAE.gb RNA_similarity_group_I 110645304 Nucleic_acids_Res._37_(DATABASE_ISSUE),_D483-D488_(2009) NA NC_002516 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18978025 1299 NA genomic_DNA NA PAO1 NA probable_synonym_or_variety:_"Pseudomonas_polycolor"_Clara_1930 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 208964 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas Pseudomonas_Genome_Database:_facilitating_user-friendly,_comprehensive_comparisons_of_microbial_genomes NA NC_002516.2 ATGACTGCCCCTGTTCACCAGTACAGCAACGAAGAACGCCGCAAGCGCATCTTCGCCATCGTCGGCGCCTCCTCCGGCAACCTCGTGGAATGGTTCGACTTCTACGTCTACGCCTTCTGCGCGATCTACTTCGCACCGGCCTTCTTCCCCTCCGACAACCCCACGGTGCAGTTGCTGAACACCGCCGGGGTCTTCGCCGCCGGCTTCCTCATGCGCCCCATCGGCGGCTGGATGTTCGGCCGCATCGCCGACAAGCACGGGCGCAAGACCGCCATGCTGATCTCGGTGGTGATGATGTGCGCCGGCTCCCTGGCGATCGCCTGCATGCCCACCTACGCCAGCATCGGCACCCTGGCGCCGGCGCTGCTGTTGCTGGCGCGGATGTTCCAGGGCCTGTCGGTGGGCGGCGAGTACGGCACCAGCGCGACCTACATGAGCGAGGTGGCGCTCAAGGGCCAGCGCGGCTTCTTCGCCTCGTTCCAGTACGTCACCCTGATCGGCGGACAGTTGCTGGCGGTGCTGGTGGTGGTGATCCTGCAGCAGTTGCTGAGCGAAGACGAACTGCGCGCCTGGGGCTGGCGGATTCCCTTCGTGATCGGCGCGATCACCGCGGTGATCGCCCTCTGGCTGCGGCGCTCGCTGAACGAGACCGCTTCGAAGTCGACCCTGGAGCGCAAGGAATCCGGCACCTTCGCCGAGCTGTTCAAGCACAAGCGGGCCTTCTTCACCGTGCTCGGCTTCACCGCCGGCGGCTCGCTGATCTTCTACACCTTCACCACCTACATGCAGAAGTACCTGGTCAACACCGCCGGGATGAGCGCCAAGACCGCCAGCGCGGTGATGACCTTCGCCCTGCTGGCGTACATGCTGATGCAACCGCTGTTCGGCATGCTTTCCGATCGCATCGGGCGCAAGACCTCGATGCTCTGGTTCGGCACCCTGGGCACGCTCTGCACCCTGCCGATCCTGCTCGCGCTGAAGACCGTGAGCAGTCCCTACATGGCCTTCTTCCTGATCATCCTGGCGCTGGCCATCGTCAGCCTGTACACCTCCATCAGCGGCCTGATCAAGGCCGAGATGTTCCCGCCGGAGGTGCGCGCCCTCGGCGTCGGAGTGTCCTACGCGGTGGGCAACGCGATCTTCGGCGGCTCGGCCGAGTACGTCGCCCTGGGGCTGAAGTCGGTAGGGATGGAGAACGTCTTCTACTGGTATGTTTCAGCCATGTGCCTGCTGGCGCTGCTGGTCTGCGTGAGCCTGCCGGACCTGCGCAAGGTCAGCTACCTGAACGACGAGCCCTGA > 913 PFWH6_1470 NA citrate-proton_symport EFQ64850.1 11 MTSPARPDSARSKVGAVFRVTSGNFLEQFDFFLFGFYATYIAAAFSPAANEFASLMMTFAVFGAGFLMRPLGAVILGAYIDDVGRRKGLIVTLSIMASGTLLIVLVPGYHTIGLWAPLLVLLGRLLQGFSAGAELGGVSVYLAEMATPGRKGFYTSWQSGSQQISIVVAAALGYGLNVWMEPAVVADWGWRIPFAIGCVIIPFIFVLRRNLQETEEFAKRQHRPTMREVMATLVKNWTMVIGGMLMVAMTTTAFYLITVYAPTFGKTVLQLSTSDALLVTLLVAVSNFVWLPIGGTLSDRFGRKPVLVAMTVLTVLTAYPALSYVVNAPSFAHMLETLLWFSFLYGMYNGAMIPALTEIMPVEVRVAGFSLAYSLATAVFGGFTPAISTWFIHITEDKASPAYWMMFAALCALCSTLALYRRANSRGQVMQEALR gamma_subgroup Pseudomonas_fluorescens_WH6 Pseudomonas_fluorescens_WH6 AEAZ01000007 274599..275906 Kimbrel,J.A.,_Givan,S.A.,_Halgren,A.B.,_Creason,A.L.,_Mills,D.I.,_Banowetz,G.M.,_Armstrong,D.J._and_Chang,J.H. NA 0:1308 ##Genome-Assembly-Data-START##Assembly_Method_::_Velvet_v._0.7.55Assembly_Name_::_WH6_v1Genome_Coverage_::_65-120xSequencing_Technology_::_Sanger;_454;_Solexa##Genome-Assembly-Data-END## NA 05-NOV-2010 Pseudomonas_fluorescens_WH6_WH6_7,_whole_genome_shotgun_sequence. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_fluorescens_E2XN94_PSEFL.gb RNA_similarity_group_I 311286015 BMC_Genomics_11,_522_(2010) NA AEAZ01000007 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20920191 1308 NA genomic_DNA NA WH6 NA bacterium_P1-1 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 746360 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas An_improved,_high-quality_draft_genome_sequence_of_the_Germination-Arrest_Factor-producing_Pseudomonas_fluorescens_WH6 NA AEAZ01000007.1 TCATCGCAGTGCCTCCTGCATCACTTGGCCACGGCTGTTGGCGCGGCGATACAGGGCCAGGGTCGAACACAGCGCGCACAGCGCGGCGAACATCATCCAGTAGGCCGGCGAGGCTTTGTCTTCGGTGATATGGATAAACCAGGTGGAGATCGCCGGGGTAAAACCACCGAACACGGCGGTCGCCAGGCTGTAGGCCAGGGAGAAGCCCGCCACGCGCACTTCCACCGGCATGATTTCGGTCAGGGCCGGGATCATGGCGCCGTTGTACATGCCATAGAGGAAGGAGAACCACAGCAGGGTTTCCAGCATGTGGGCGAAGCTCGGTGCGTTGACCACGTAGGACAGCGCTGGATAAGCCGTGAGAACGGTCAGCACGGTCATGGCGACCAGTACCGGCTTACGGCCGAAGCGGTCGCTCAAGGTGCCGCCGATCGGCAGCCATACGAAGTTCGACACCGCCACCAGCAGAGTCACCAGAAGGGCGTCGGACGTGCTCAGTTGCAGCACGGTCTTGCCGAAGGTCGGTGCGTACACGGTGATCAGGTAAAACGCGGTGGTGGTCATCGCCACCATGAGCATGCCGCCGATGACCATGGTCCAGTTTTTCACCAGGGTCGCCATGACTTCACGCATGGTGGGGCGATGCTGGCGCTTGGCGAATTCTTCGGTTTCCTGCAGGTTGCGTCGCAGCACGAAGATGAACGGGATAATCACGCAACCGATGGCGAACGGAATGCGCCAGCCCCAATCGGCCACCACGGCGGGTTCCATCCAGACGTTCAGGCCATAGCCCAGTGCGGCGGCGACCACGATGGAAATCTGCTGGCTGCCCGACTGCCAGCTGGTGTAGAAGCCTTTGCGGCCCGGAGTGGCCATTTCGGCGAGGTACACCGACACACCGCCCAGTTCCGCGCCGGCCGAAAAGCCCTGCAACAGACGGCCCAGCAGCACCAGCAGCGGGGCCCACAGGCCAATGGTGTGATAACCCGGCACCAGCACGATCAGCAGCGTGCCGCTGGCCATGATCGACAGGGTCACGATCAGCCCTTTGCGGCGACCGACGTCATCAATGTAGGCACCCAGAATCACCGCACCCAATGGACGCATCAGGAAGCCCGCGCCGAACACGGCGAAGGTCATCATTAATGACGCAAACTCATTAGCGGCGGGGGAGAACGCGGCAGCAATATAGGTGGCGTAGAAGCCGAACAGAAAGAAATCGAACTGTTCGAGGAAGTTGCCCGAAGTGACGCGGAAAACCGCACCCACTTTAGAGCGGGCAGAATCGGGCCGAGCAGGGCTAGTCAT > 914 PFWH6_3319 NA general_substrate_transporter EFQ62874.1 11 MSASITDANGHAAEAPNRIKAIMGACSGNLVEWYDFFIYAYTAIYFAASFFPKGDTTSQLLATAGVFAVGFFMRPLGGWIFGWIADTRGRKVSMIISVFMMCAGSLLIAIMPTYATIGVAAPILLVVARLIQGLSVGAEYGTGATYISEIATPGRRCFYGSFQYFTIIAGQLLALMTVVVLQQTLSSEELREWGWRIPFFIGALSSIVVVYLRRAMHETANKKDMNRKDAGSLRGMFKHKRAVALVVAFTIGGSLYFYTFTTYMQKFLVISAGFSPETVSFIMTAALVGFMLCQPLFGLLADRIGIKAHMLMFSGLAMLLVIPLLYSLQSISNPFMAFLLVFGGLAIASLYTPIAGIVKAELFPPAVRALGVGFPYAVGNAAFGGTAEYVALSLRSQGVEAYFFFYVAAVVSITFIAAMLMPNLSRYGYISGSGEIEERTGLKGCIKPHAARV gamma_subgroup Pseudomonas_fluorescens_WH6 Pseudomonas_fluorescens_WH6 AEAZ01000021 4441..5802 Kimbrel,J.A.,_Givan,S.A.,_Halgren,A.B.,_Creason,A.L.,_Mills,D.I.,_Banowetz,G.M.,_Armstrong,D.J._and_Chang,J.H. NA 0:1362 ##Genome-Assembly-Data-START##Assembly_Method_::_Velvet_v._0.7.55Assembly_Name_::_WH6_v1Genome_Coverage_::_65-120xSequencing_Technology_::_Sanger;_454;_Solexa##Genome-Assembly-Data-END## NA 05-NOV-2010 Pseudomonas_fluorescens_WH6_WH6_21,_whole_genome_shotgun_sequence. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_fluorescens_E2XTG9_PSEFL.gb RNA_similarity_group_I 311284291 BMC_Genomics_11,_522_(2010) NA AEAZ01000021 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 20920191 1362 NA genomic_DNA NA WH6 NA bacterium_P1-1 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 746360 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas An_improved,_high-quality_draft_genome_sequence_of_the_Germination-Arrest_Factor-producing_Pseudomonas_fluorescens_WH6 NA AEAZ01000021.1 TCAGACTCGCGCAGCATGCGGCTTGATACAGCCTTTCAGACCGGTACGTTCTTCAATCTCCCCTGAACCGCTGATATAGCCGTAACGCGACAAATTTGGCATCAGCATCGCGGCGATGAAGGTGATGCTCACGACTGCCGCGACGTAGAAGAAAAAGTACGCCTCGACGCCTTGTGAGCGAAGCGACAAGGCCACGTATTCGGCGGTGCCGCCAAATGCTGCATTGCCCACCGCGTAGGGAAATCCAACGCCTAATGCCCGGACCGCAGGCGGGAACAGTTCGGCTTTGACGATCCCGGCAATCGGCGTGTAGAGCGACGCAATGGCCAGGCCGCCAAACACGAGCAGGAATGCCATGAATGGGTTGCTGATTGACTGCAGCGAGTAGAGCAGCGGGATCACCAGCAGCATCGCCAAGCCAGAGAACATCAGCATGTGCGCCTTGATACCGATACGGTCGGCGAGCAAGCCAAACAGTGGCTGACAGAGCATGAAGCCGACCAAGGCCGCGGTCATGATGAAGCTGACCGTTTCCGGGCTGAAGCCGGCGGAGATCACCAGGAATTTCTGCATGTACGTGGTGAAGGTATAGAAATACAGCGAACCACCAATGGTGAATGCCACCACCAGGGCAACCGCGCGTTTGTGTTTGAACATGCCTCGTAGAGAGCCGGCATCTTTGCGATTCATGTCTTTCTTGTTGGCGGTTTCGTGCATGGCGCGGCGCAGATACACCACTACGATCGAACTCAGCGCGCCGATGAAGAACGGAATCCTCCAACCCCACTCGCGCAACTCTTCGCTGGACAGGGTTTGCTGGAGAACGACCACGGTCATCAAGGCCAGCAGCTGGCCGGCAATAATGGTGAAGTACTGAAACGAGCCATAGAAACAGCGGCGGCCGGGGGTCGCGATTTCGCTGATGTAGGTGGCGCCGGTACCGTATTCCGCACCGACCGACAGGCCCTGAATCAGCCTGGCAACCACGAGCAGGATCGGCGCTGCGACGCCTATGGTTGCGTAGGTCGGCATGATCGCGATCAGCAGCGAGCCGGCGCACATCATGAACACCGAAATGATCATTGAGACCTTGCGGCCGCGAGTGTCAGCGATCCAGCCGAATATCCAGCCACCGAGCGGGCGCATGAAGAAGCCGACGGCGAATACGCCCGCGGTTGCCAATAACTGGCTGGTGGTGTCTCCCTTGGGGAAAAACGAAGCCGCAAAGTAGATGGCGGTGTAGGCATAAATGAAAAAGTCGTACCACTCCACCAGATTGCCCGAGCAGGCACCCATGATGGCTTTGATGCGGTTCGGTGCTTCTGCTGCATGGCCGTTGGCGTCTGTGATTGAGGCGGACAT > 915 Pfl01_4459 NA citrate-proton_symport YP_350187.1 11 MDNSNALPLGSAAVPAKERTTASRIKSIFSGSVGNMVEWYDWYVYAAFSLYFAKAFFPKGDTTAQLLNTAAIFAVGFLMRPIGGWLMGLYADKVGRKKALMASVYLMCFGSLIIALSPGYETIGVGAPILLVFARLLQGLSVGGEYGTSATYLSEMATKDRRGFFSSFQYVTLISGQLIALGVLIVLQQFLTTEELYAWGWRIPFAIGALCAIVALYLRRGMEETESFTKKEKSKESAMRTLLRHPKELLTVVGLTMGGTLAFYTYTTYMQKYLVNTVGMSISDSTTISAATLFLFMCLQPIIGGLSDKIGRRPILIAFGVLGTIFTVPILMTLHTIQTWWGAFFLIMAALIIVSGYTSINAVVKAELFPTEIRALGVGLPYALTVSIFGGTAEYIALWFKSIGMETGYYWYVTACIAVSLLVYITMKDTQKHSRIVTD gamma_subgroup Pseudomonas_fluorescens_Pf0-1 Pseudomonas_fluorescens_Pf0-1 NC_007492 5031358..5032677 Silby,M.W.,_Cerdeno-Tarraga,A.M.,_Vernikos,G.S.,_Giddens,S.R.,_Jackson,R.W.,_Preston,G.M.,_Zhang,X.X.,_Moon,C.D.,_Gehrig,S.M.,_Godfrey,S.A.,_Knight,C.G.,_Malone,J.G.,_Robinson,Z.,_Spiers,A.J.,_Harris,S.,_Challis,G.L.,_Yaxley,A.M.,_Harris,D.,_Seeger,K.,_Murphy,L.,_Rutter,S.,_Squares,R.,_Quail,M.A.,_Saunders,E.,_Mavromatis,K.,_Brettin,T.S.,_Bentley,S.D.,_Hothersall,J.,_Stephens,E.,_Thomas,C.M.,_Parkhill,J.,_Levy,S.B.,_Rainey,P.B._and_Thomson,N.R. NA 0:1320 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000094.On_Aug_14,_2009_this_sequence_version_replaced_gi:77456228.URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Mark_Silby(mark.silby@tufts.edu)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLQuality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFContacts:_Paul_Richardson_(microbes@cuba.jgi-psf.org)Finished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.COMPLETENESS:_full_length. NA 20-JAN-2012 Pseudomonas_fluorescens_Pf0-1_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_fluorescens_Q3K7Q8_PSEPF.gb RNA_similarity_group_I 255961261 Genome_Biol._10_(5),_R51_(2009) NA NC_007492 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19432983 1320 NA genomic_DNA NA Pf0-1 NA bacterium_P1-1 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 205922 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas Genomic_and_genetic_analyses_of_diversity_and_plant_interactions_of_Pseudomonas_fluorescens NA NC_007492.2 ATGGATAACTCCAACGCCCTGCCTCTTGGGTCGGCTGCCGTGCCGGCCAAAGAACGAACCACCGCCAGTCGCATCAAGTCGATCTTCAGCGGTTCCGTCGGCAACATGGTCGAGTGGTACGACTGGTACGTCTATGCCGCCTTCTCGCTGTATTTCGCCAAAGCCTTCTTCCCCAAAGGCGACACCACCGCCCAACTGCTCAACACCGCCGCGATCTTCGCCGTGGGCTTCCTGATGCGCCCGATCGGTGGCTGGCTGATGGGGCTGTACGCCGACAAGGTCGGACGCAAAAAAGCCCTGATGGCCTCGGTTTACCTGATGTGCTTCGGCTCGCTGATCATCGCCCTGAGCCCGGGCTATGAAACCATCGGTGTCGGCGCGCCGATCCTGCTGGTGTTCGCCCGCCTGCTGCAAGGCCTGTCGGTCGGTGGCGAATACGGCACCTCGGCGACCTACCTGTCGGAGATGGCGACCAAGGATCGTCGCGGCTTCTTCTCCAGCTTCCAGTACGTGACTTTGATTTCCGGCCAGCTCATCGCGCTGGGCGTGCTGATCGTGCTGCAACAGTTCCTGACCACCGAAGAGCTTTACGCGTGGGGCTGGCGTATTCCGTTCGCCATCGGTGCGCTGTGCGCAATCGTGGCGCTGTACCTGCGTCGTGGCATGGAAGAAACCGAGTCGTTCACCAAGAAAGAGAAGTCCAAGGAAAGCGCCATGCGCACCTTGCTTCGTCATCCGAAGGAACTGCTGACCGTGGTCGGCCTGACCATGGGCGGTACGCTGGCGTTCTACACCTACACCACCTACATGCAGAAATACCTGGTGAACACCGTCGGCATGAGCATCTCCGACTCCACCACCATTTCCGCCGCCACGCTGTTCCTGTTCATGTGCCTGCAACCGATCATCGGCGGCCTGTCGGATAAAATCGGTCGTCGCCCGATCCTGATCGCCTTCGGCGTGCTCGGTACGATCTTCACCGTGCCGATCCTGATGACCCTGCACACCATCCAGACCTGGTGGGGCGCGTTCTTCCTGATCATGGCGGCGCTGATCATTGTCAGCGGCTACACCTCGATCAACGCCGTGGTGAAGGCCGAGCTGTTCCCGACCGAAATCCGCGCCCTGGGCGTCGGCCTGCCGTACGCACTGACCGTGTCGATCTTCGGCGGCACCGCCGAATACATCGCGCTGTGGTTCAAGAGCATCGGCATGGAAACCGGTTATTACTGGTACGTGACCGCGTGCATCGCGGTGTCCCTGCTGGTGTACATCACCATGAAAGACACGCAGAAACATTCTCGGATCGTCACTGACTGA > 916 Pfl01_1404 NA general_substrate_transporter YP_347136.1 11 MSAPDTLDLPKTAARLGPFDWYRNINQQERRTFWSCKIGYGLDGMDTQMLSFVVPTLIAMWGITTGEAGLIHTSTLIASAIGGWVAGILSDRIGRVRTLQLTVLWFAFFTFLCGFAQNYEQLLIARTLMGFGFGGEWTAGAVLIGEVIRAKDRGKAVGMVQSGWALGWGLTAILYALLFSVLPPEDAWRALFILGIVPAVFVIFVRRLVKDPEIYREAKARQTPESPSKFYEIFAPGMLFTTIRASLLTTGALGGYYAITSWLPTFLKNERGLSVLGTGGYLAMVIIGSYAGYVISAYLTDLLGRKKNFILFAVGSFTIVLLYTQLPVSNGVMLWLGFPLGFFASGIFSGMGAFLTELFPTRIRGSGQGFCYNIGRALAALFPLLIGLLSQKVPLSVGIGAFAAVSYGVVILAALSLPETRGKQLDAQ gamma_subgroup Pseudomonas_fluorescens_Pf0-1 Pseudomonas_fluorescens_Pf0-1 NC_007492 1575295..1576581 Silby,M.W.,_Cerdeno-Tarraga,A.M.,_Vernikos,G.S.,_Giddens,S.R.,_Jackson,R.W.,_Preston,G.M.,_Zhang,X.X.,_Moon,C.D.,_Gehrig,S.M.,_Godfrey,S.A.,_Knight,C.G.,_Malone,J.G.,_Robinson,Z.,_Spiers,A.J.,_Harris,S.,_Challis,G.L.,_Yaxley,A.M.,_Harris,D.,_Seeger,K.,_Murphy,L.,_Rutter,S.,_Squares,R.,_Quail,M.A.,_Saunders,E.,_Mavromatis,K.,_Brettin,T.S.,_Bentley,S.D.,_Hothersall,J.,_Stephens,E.,_Thomas,C.M.,_Parkhill,J.,_Levy,S.B.,_Rainey,P.B._and_Thomson,N.R. NA 0:1287 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000094.On_Aug_14,_2009_this_sequence_version_replaced_gi:77456228.URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Mark_Silby(mark.silby@tufts.edu)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLQuality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFContacts:_Paul_Richardson_(microbes@cuba.jgi-psf.org)Finished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.COMPLETENESS:_full_length. NA 20-JAN-2012 Pseudomonas_fluorescens_Pf0-1_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_fluorescens_Q3KGF9_PSEPF.gb RNA_similarity_group_I 255961261 Genome_Biol._10_(5),_R51_(2009) NA NC_007492 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19432983 1287 NA genomic_DNA NA Pf0-1 NA bacterium_P1-1 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 205922 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas Genomic_and_genetic_analyses_of_diversity_and_plant_interactions_of_Pseudomonas_fluorescens NA NC_007492.2 ATGAGTGCGCCCGACACCCTCGACCTCCCCAAGACTGCGGCCCGTCTCGGCCCGTTCGACTGGTATCGCAACATCAATCAGCAGGAGCGCCGGACCTTCTGGAGCTGCAAGATCGGCTACGGTCTGGACGGCATGGACACCCAGATGCTCAGCTTCGTGGTGCCGACCCTGATCGCAATGTGGGGCATCACCACCGGCGAAGCCGGCCTGATCCACACCAGCACCCTGATCGCTTCGGCCATCGGCGGTTGGGTGGCGGGAATTCTCTCCGACCGCATCGGCCGCGTGCGCACCCTGCAACTGACGGTGCTGTGGTTTGCCTTCTTCACTTTCCTTTGCGGCTTTGCCCAGAACTACGAACAGCTGTTGATTGCCCGCACCTTGATGGGCTTCGGTTTCGGCGGTGAATGGACCGCCGGTGCGGTGCTGATCGGTGAAGTGATCCGGGCCAAGGACCGCGGCAAGGCGGTGGGCATGGTGCAATCCGGCTGGGCCTTGGGTTGGGGCCTGACGGCGATTCTGTATGCGCTGCTGTTTTCGGTGCTGCCACCGGAAGACGCCTGGCGCGCACTGTTCATCCTTGGCATCGTGCCGGCGGTGTTCGTGATTTTCGTCCGCCGTCTGGTGAAAGATCCGGAGATCTACCGCGAAGCCAAGGCCAGACAAACCCCGGAAAGCCCTTCGAAGTTCTACGAGATTTTCGCCCCCGGCATGCTCTTCACCACGATTCGTGCCTCGCTGCTGACCACCGGCGCCCTCGGCGGTTATTACGCGATTACCTCCTGGCTGCCGACTTTTCTGAAAAACGAACGCGGTTTGAGCGTACTCGGCACCGGCGGTTATCTGGCGATGGTGATCATCGGTTCCTACGCCGGTTATGTGATCAGCGCCTATTTGACCGACCTGTTGGGCCGCAAGAAGAACTTCATCCTGTTCGCCGTCGGCTCGTTCACCATCGTTCTGCTCTACACCCAATTGCCGGTCAGCAACGGCGTGATGCTGTGGCTGGGTTTCCCGCTGGGCTTTTTCGCCTCGGGGATTTTCAGTGGGATGGGCGCGTTTCTCACCGAGTTGTTTCCAACCCGGATTCGTGGCTCGGGGCAGGGCTTCTGCTACAACATCGGTCGGGCGCTGGCGGCTTTGTTCCCGCTGCTGATCGGCCTGCTCAGTCAGAAGGTGCCACTGAGCGTAGGCATCGGTGCCTTTGCGGCGGTGTCCTACGGGGTGGTGATCCTCGCGGCGTTGAGCCTGCCGGAAACCCGTGGCAAGCAACTGGACGCGCAGTAA > 917 PFL_4804 identified_by_similarity_to_SP:P0AEX3;_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 alpha-ketoglutarate_MFS_transporter_KgtP YP_261885.1 11 MDISNTLPAGSAAAPATEKTTASRLKSIFSGSVGNMVEWYDWYVYAAFSLYFAKVFFPKGDTTAQLLNTAAIFAVGFLMRPIGGWLMGLYADRKGRKAALMASVLLMCFGSLIIALTPGYETIGVGAPILLVLARLMQGLSVGGEYGTSATYLSEMATKERRGFFSSFQYVTLISGQLIALAVLIVLQNILTTEELQSWGWRIPFGIGALCAVVALYLRRGMEETESFTKKKEKPKESLMRTLMRHPKELMTVVGLTMGGTLAFYTYTTYMQKYLVNTVGMSISDSTTISAATLFLFMCLQPVIGALSDKVGRRPILIAFGILGTLFTVPILTTLHTIQTWWGAFFLIMAALIIVSGYTSINAVVKAELFPTEIRALGVGLPYALTVSIFGGTAEYIALWFKSIGMETGYYWYVTACIACSLLVYATMKDTRKHSRIETD gamma_subgroup Pseudomonas_fluorescens_Pf-5 Pseudomonas_fluorescens_Pf-5 NC_004129 5547056..5548378 Gross,H.,_Stockwell,V.O.,_Henkels,M.D.,_Nowak-Thompson,B.,_Loper,J.E._and_Gerwick,W.H. NA 0:1323 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP000076.On_Jul_12,_2005_this_sequence_version_replaced_gi:41584502.COMPLETENESS:_full_length. NA 20-JAN-2012 Pseudomonas_fluorescens_Pf-5_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_fluorescens_Q4K798_PSEF5.gb RNA_similarity_group_I 70728250 Chem._Biol._14_(1),_53-63_(2007) NA NC_004129 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 17254952 1323 NA genomic_DNA NA Pf-5 NA bacterium_P1-1 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 220664 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas The_genomisotopic_approach:_a_systematic_method_to_isolate_products_of_orphan_biosynthetic_gene_clusters NA NC_004129.6 ATGGATATCTCTAATACCCTGCCTGCCGGGTCGGCGGCTGCGCCCGCCACAGAAAAGACCACCGCCAGCCGCCTGAAGTCGATCTTCAGCGGCTCCGTGGGCAACATGGTCGAGTGGTACGACTGGTACGTCTACGCCGCCTTCTCGCTGTACTTCGCCAAAGTCTTCTTCCCCAAGGGCGACACCACCGCCCAACTGCTGAACACCGCCGCGATCTTCGCCGTGGGCTTCCTGATGCGCCCGATCGGTGGCTGGCTGATGGGGCTGTATGCCGACCGCAAAGGGCGTAAGGCCGCCTTGATGGCCTCGGTGCTGCTGATGTGCTTCGGCTCGCTGATCATCGCCCTGACCCCCGGTTACGAAACCATCGGCGTCGGCGCCCCCATCCTGCTGGTGCTGGCGCGCCTGATGCAGGGCCTGTCGGTAGGCGGTGAATACGGTACCTCGGCCACCTACCTCAGCGAGATGGCGACCAAGGAACGTCGTGGCTTCTTCTCCAGCTTCCAGTACGTGACCCTGATCTCCGGCCAGCTCATCGCCCTGGCGGTGCTGATCGTGCTGCAGAACATTCTGACCACCGAGGAACTGCAGTCCTGGGGCTGGCGGATTCCGTTCGGCATCGGTGCCCTCTGCGCCGTGGTAGCCCTGTACCTGCGTCGCGGCATGGAAGAAACCGAGTCCTTCACCAAGAAGAAGGAAAAGCCCAAGGAAAGCCTGATGCGCACCCTGATGCGTCATCCCAAGGAGTTGATGACCGTGGTCGGCCTGACCATGGGCGGCACCCTGGCCTTCTATACCTACACCACCTACATGCAGAAATACCTGGTGAACACTGTCGGCATGAGCATCTCCGACTCCACCACCATTTCCGCCGCCACGCTGTTCCTGTTCATGTGCCTGCAACCGGTGATCGGTGCTCTCTCGGACAAGGTTGGCCGGCGCCCGATCCTGATTGCCTTCGGTATCCTCGGCACCCTGTTCACCGTGCCGATCCTCACCACCCTGCACACCATCCAGACCTGGTGGGGCGCGTTCTTCCTGATCATGGCGGCGCTGATCATCGTCAGCGGCTACACCTCGATCAACGCGGTGGTCAAGGCCGAGCTGTTCCCTACGGAAATCCGCGCCCTGGGCGTGGGCCTGCCGTACGCACTGACCGTGTCGATCTTCGGCGGTACCGCCGAATACATCGCCCTGTGGTTCAAGAGCATCGGTATGGAAACCGGCTACTACTGGTACGTCACCGCCTGCATCGCCTGTTCGCTGCTGGTCTACGCGACCATGAAAGACACCCGCAAGCATTCGCGGATCGAGACTGACTGA > 918 PFL_2486 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter YP_259593.1 11 MSEHAQPLNAPLQDSTAKGSQKVIFASSLGTVFEWYDFFLYGALAAVISKQFFAGVNDTTAFIFALMAFAAGFVVRPFGALVFGRLGDMIGRKYTFLATIILMGVATFAVGLLPNYASIGIAAPIILVALRMLQGLALGGEYGGAATYVAEHAPQGKRGLHTSWIQSTATLGLLLSLLVVLACRYFTGDQFEVWGWRLPFLLSIVLLGISTWIRMSLHESPAFLKMKEEGRASKAPIRESFGKWENLKVVLIALFSINAGQAVTFYAAQFYVLFFLTQFLKMDPALANSLLIISVVIGAPMFIFFGWLSDKIGRKPVLMLGLLLATLLYFPIFKALAHYANPAIDQASRQAPISVTADPATCTFQFDPVGKARFDSPCDKVKTFLVKQGLPYSSIAAPAGSPVQVSVGDVKINGFDEAALRGAVTLAGYPQQADSQNVNKTMVVVLIVALILIAAMCYGPLAALMVELFPTRIRYTSMSLPYHIGNGWFGGFLPTVSFALVVYTGDIFYGLWYPVLITGVSLVVGLLCLRETRDVDINHN gamma_subgroup Pseudomonas_fluorescens_Pf-5 Pseudomonas_fluorescens_Pf-5 NC_004129 2750626..2752248 Gross,H.,_Stockwell,V.O.,_Henkels,M.D.,_Nowak-Thompson,B.,_Loper,J.E._and_Gerwick,W.H. NA 0:1623 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP000076.On_Jul_12,_2005_this_sequence_version_replaced_gi:41584502.COMPLETENESS:_full_length. NA 20-JAN-2012 Pseudomonas_fluorescens_Pf-5_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_fluorescens_Q4KDU0_PSEF5.gb RNA_similarity_group_I 70728250 Chem._Biol._14_(1),_53-63_(2007) NA NC_004129 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 17254952 1623 NA genomic_DNA NA Pf-5 NA bacterium_P1-1 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 220664 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas The_genomisotopic_approach:_a_systematic_method_to_isolate_products_of_orphan_biosynthetic_gene_clusters NA NC_004129.6 TCAGTTGTGGTTGATGTCGACGTCCCGGGTTTCCCGCAGGCACAACAACCCCACCACCAGGCTGACCCCGGTAATCAGCACCGGGTACCACAGGCCATAGAAGATATCGCCGGTGTAGACCACCAGGGCAAAGGACACGGTCGGCAGGAAACCGCCGAACCAGCCGTTGCCGATGTGGTAGGGCAGGGACATGGAGGTGTAGCGGATACGGGTCGGGAACAGCTCCACCATCAGCGCCGCCAGCGGGCCGTAGCACATGGCGGCAATCAGGATCAGCGCGACGATCAGCACCACCACCATGGTCTTGTTGACGTTCTGGCTGTCGGCCTGCTGCGGATAACCGGCCAGGGTCACTGCGCCGCGCAGGGCGGCCTCGTCGAAGCCGTTGATCTTCACATCACCGACGCTGACCTGCACCGGGCTGCCGGCGGGGGCGGCGATGCTGCTGTAGGGCAGGCCCTGCTTCACCAGGAAGGTCTTGACCTTGTCGCAGGGGCTGTCGAAGCGCGCCTTGCCCACCGGGTCGAACTGGAAGGTGCAGGTGGCCGGGTCGGCGGTGACGCTGATGGGCGCCTGGCGGCTGGCCTGGTCGATGGCCGGGTTGGCGTAGTGGGCCAGGGCCTTGAAGATCGGGAAGTACAGCAGCGTGGCCAGCAGCAGGCCGAGCATCAGCACCGGCTTGCGGCCGATCTTGTCCGAGAGCCAGCCAAAGAAGATGAACATCGGCGCGCCGATCACCACGCTGATGATCAGCAGGCTGTTGGCCAGGGCCGGGTCCATCTTGAGGAACTGGGTGAGAAAGAACAAAACGTAGAACTGCGCGGCATAGAAGGTCACCGCCTGCCCGGCATTGATGCTGAACAGGGCGATCAGCACCACCTTGAGGTTTTCCCACTTGCCGAAGGATTCGCGGATCGGCGCCTTGCTGGCGCGGCCTTCCTCTTTCATTTTCAGGAAGGCCGGCGACTCGTGCAGGCTCATGCGGATCCAGGTGGAGATGCCCAGCAGCACGATGGACAGCAGGAACGGCAGGCGCCAGCCCCAGACCTCGAACTGGTCGCCGGTGAAGTAACGGCAGGCCAGCACCACCAGCAGCGACAGCAGCAGGCCCAGGGTCGCGGTGGACTGGATCCAGCTGGTGTGCAAGCCGCGCTTGCCCTGGGGCGCGTGCTCGGCCACGTAGGTGGCGGCGCCGCCGTACTCGCCGCCCAGGGCCAGGCCCTGGAGCATGCGCAGGGCCACCAGGATGATCGGCGCGGCGATGCCGATGCTGGCGTAGTTGGGCAACAGGCCCACGGCGAAGGTCGCAACGCCCATGAGGATGATGGTGGCAAGGAAGGTGTACTTGCGCCCGATCATGTCCCCCAGGCGGCCGAACACCAGGGCGCCGAAGGGGCGCACCACGAAGCCGGCGGCAAAGGCCATCAGGGCGAAGATGAAGGCCGTGGTGTCGTTGACCCCGGCGAAGAACTGCTTGCTGATCACCGCCGCCAGGGCGCCGTAGAGGAAAAAGTCGTACCACTCGAACACCGTGCCGAGGGACGACGCGAAGATGACCTTCTGGCTGCCCTTGGCAGTGGAGTCCTGCAGGGGCGCGTTCAGGGGCTGTGCGTGTTCTGACAT > 919 PFL_2175 identified_by_similarity_to_SP:P07661;_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 citrate:proton_symporter YP_259282.1 11 MTALATTSTAPRVEPKALWKPIGAALIGNTLEWFDLSIYAYFALTISQVFFPTADPTFSLLLAFATFGISFLIRPLGAAVLGSYADRKGRKKALTLSILIMLTGTLLIAIMPSYATLGLAAPIGILLARLLQGFSAGGEFGTSTAFMLEHAPPRTRHFVASLQFASQGFGVVIASTFGYFLTKHLDAQQMLDWGWRVPFFFGLLLGPVGLYIRRTVDESPDFKASEPGERPLREVLVTQKTLLLIAMGTLVVSTASNYMIQYMPSYAATSLNIAQSSGFLATLTGGLILTIITPIVGYLSGHIGRLKIMLAAAVVYAVAILPAFFWLNSRPSASSLLLVVALMALIKAVYFAPLPSLMADIFPVRTRVTGMSLSYNLGVTIFGGFAPVIATGLIALTGSQLAPSFYLMLAAALSVVALLMARKKLGMT gamma_subgroup Pseudomonas_fluorescens_Pf-5 Pseudomonas_fluorescens_Pf-5 NC_004129 2431590..2432876 Gross,H.,_Stockwell,V.O.,_Henkels,M.D.,_Nowak-Thompson,B.,_Loper,J.E._and_Gerwick,W.H. NA 0:1287 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP000076.On_Jul_12,_2005_this_sequence_version_replaced_gi:41584502.COMPLETENESS:_full_length. NA 20-JAN-2012 Pseudomonas_fluorescens_Pf-5_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_fluorescens_Q4KEQ1_PSEF5.gb RNA_similarity_group_I 70728250 Chem._Biol._14_(1),_53-63_(2007) NA NC_004129 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 17254952 1287 NA genomic_DNA NA Pf-5 NA bacterium_P1-1 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 220664 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas The_genomisotopic_approach:_a_systematic_method_to_isolate_products_of_orphan_biosynthetic_gene_clusters NA NC_004129.6 TCAGGTCATTCCGAGTTTTTTACGCGCCATCAACAGGGCTACGACGCTCAACGCTGCCGCCAGCATCAGGTAGAAACTCGGTGCCAGCTGTGAGCCGGTCAGGGCAATCAATCCGGTAGCGATCACCGGGGCAAAACCGCCGAAGATCGTGACCCCCAGGTTGTAGCTCAGGGACATGCCGGTGACCCGGGTGCGCACCGGGAAGATGTCCGCCATCAGCGACGGCAGCGGGGCGAAGTACACCGCCTTGATCAGGGCCATCAGCGCCACCACCAGCAGCAGCGAACTGGCACTGGGGCGGCTGTTGAGCCAGAAGAACGCCGGCAGGATCGCCACGGCATAGACCACCGCCGCTGCCAGCATGATTTTCAGGCGCCCTATATGGCCGGACAGGTAGCCGACGATGGGCGTGATGATGGTCAGGATCAGGCCGCCGGTAAGGGTCGCCAAAAAGCCCGAGGACTGGGCGATGTTCAGGCTGGTGGCGGCGTAGGAGGGCATGTACTGGATCATGTAGTTCGAGGCGGTCGACACCACCAGGGTGCCCATGGCGATCAGCAGCAGGGTCTTCTGGGTCACCAGCACTTCGCGCAAAGGGCGTTCCCCCGGTTCGCTGGCCTTGAAGTCCGGCGACTCGTCCACCGTACGGCGGATGTACAGGCCCACCGGGCCCAGCAGCAGGCCGAAGAAGAACGGCACGCGCCAGCCCCAGTCGAGCATCTGCTGTGCATCGAGGTGCTTGGTCAGGAAGTAGCCGAAGGTCGAGGCGATGACCACGCCAAAGCCCTGGCTGGCGAATTGCAGGCTGGCGACAAAGTGCCGGGTGCGCGGCGGCGCGTGTTCCAGCATGAAGGCGGTGGAGGTGCCGAACTCGCCACCGGCAGAGAAGCCTTGCAGCAGCCGGGCCAGGAGGATGCCGATCGGCGCGGCGAGGCCCAGGGTGGCGTAGCTGGGCATGATGGCGATCAGCAGGGTGCCCGTCAGCATGATCAGGATCGACAGGGTCAGGGCCTTCTTGCGGCCCTTGCGGTCGGCGTAGGAGCCCAGTACCGCCGCGCCCAGGGGGCGGATCAGGAACGAGATGCCGAAGGTGGCGAAGGCCAGCAGCAGGGAGAAGGTCGGGTCCGCGGTGGGAAAGAACACCTGGCTGATGGTCAGGGCGAAGTAGGCGTAGATCGACAGGTCGAACCACTCCAGGGTGTTGCCGATCAGGGCGGCGCCTATGGGTTTCCACAGGGCCTTGGGTTCGACCCGGGGCGCGGTCGAGGTGGTGGCTAACGCTGTCAT > 920 PFL_1346 identified_by_match_to_protein_family_HMM_PF01425 amidase YP_258475.1 11 MINPAEPSINASIVDLDALALSRAIHARELSCREVMQAYLAQIERCNPLVNALVSLGDPEALLEQADERDRQLAQGQSMGWMHGMPQAIKDLAATAGMTTSMGSPLFAEHVPQGDAISVARVRASGAIIVGKSNVPEFGLGSHTYNQLFGTTGNAYDSTLCAGGSSGGAAVALALRMLPVADGSDMMGSLRNPAAFNNVFGMRPSQGRVPFGPTPELFVQQLATEGPMGRTVADVARLLGTQAGFDARAPLSLKDLSAQPEAALQRNVKGLRLGWLGDYNGYLAMEQGVLGLCEKALGDFASLGCEVESCQPDFSLAQLWDCWLVHRHWLVQGSLGALYDDPDKRRWLKPEACWEVEGAAKLSAADVYRASQSRSDWYRALQRLFERYDFLLLPTAQVFPFDARQAWPRQIDGQEMDTYHRWMEVVIGPTLAGLPSISIPVGFNLAGLPMGLQVIGPAQADHAVLQLAYAHEQLTQWVRQRPPGNLR gamma_subgroup Pseudomonas_fluorescens_Pf-5 Pseudomonas_fluorescens_Pf-5 NC_004129 1521100..1522410 Gross,H.,_Stockwell,V.O.,_Henkels,M.D.,_Nowak-Thompson,B.,_Loper,J.E._and_Gerwick,W.H. NA 1307:>1311 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP000076.On_Jul_12,_2005_this_sequence_version_replaced_gi:41584502.COMPLETENESS:_full_length. NA 20-JAN-2012 Pseudomonas_fluorescens_Pf-5_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_fluorescens_Q4KH09_PSEF5.gb RNA_similarity_group_I 70728250 Chem._Biol._14_(1),_53-63_(2007) NA NC_004129 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 17254952 1311 NA genomic_DNA NA Pf-5 NA bacterium_P1-1 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 220664 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas The_genomisotopic_approach:_a_systematic_method_to_isolate_products_of_orphan_biosynthetic_gene_clusters NA NC_004129.6 ATGAGCGTCTCGACTCCCTCTGTTTCCAGGACCCGGCAGGTGGTTGCCGCCGTGGTCGGCAACGCCCTGGAATGGTACGACTTCATCGTCTACGGCTTTCTCGCCAGCTTCATCGCTCGCCAGTTCTTTCCCGCGGAAGACGAATACACCTCGCTGCTGATGGCCCTGGCCACCTTCGGCGTGGGTTTCTTCATGCGCCCGGTGGGCGGTGTGCTGCTGGGGATCTATTCCGATCGCAGGGGCCGCAAGGCGGCGATGCTGGTGATCATCCAACTGATGACCCTGGCCATCGCGATGATCGTGTTCGCCCCCAACTATGCGGCCATCGGTATCGGAGCGCCGCTGCTGATCGTGGTGGCACGCATGCTCCAGGGCTTTGCCACCGGTGGCGAGTACGCCAGCGCCACGGCCTACCTGGTGGAGAGTGCGCCGCCCCACCGCAAGGGCCTTTACGGCTCCTGGCAGTTGGTGGGGCAGTGCCTGGCGGTATTCAGCGGGGCGGCGATGGTGGCGGCGGTGACCCATTTCTTTTCGCCCCAGACCCTGGAACTCTGGGGCTGGCGCCTGCCATTCGTGATCGGCCTGCTGATCGGTCCGGTGGGGCTGTGGATCCGCAAATACATGGAAGAGCCGCAAGCCTTTGTCGAGGCACGCAAGCAGGTGCGTGGCAAAGGGCCCGGGTTGTGGCAGGTGGTATCGGCCTATCGCCGAGCGATCCTGGTGTCCATGTGCATGTGCTGCGGGGGCACCGTGTCCTTTTATGTGGTGCTGGTGAACATGCCGACCTTTGCCCACACCAACCTCGGCCTGCCCCTGGATCAGGTGCTGTTGGTGCAGATGTTCGCCGTGGCCCTGATGACCCTGGTGATTCCCTTTGCCGGGGCCTTGTCGGATCGCATTGGGCGACGTCCAGTGCTGATGGCGTTCACCCTGGCGTTTTTTGTCATGGTCTATCCCTTGTATGTGTGGGTCGCTGCGGCGCCATCCATCGAGCGCCTGCTGGTGATGCAGATGCTGCTGTGCGGGGCCATCGGCGGTTTCTTCGGCCCCGGCCCCACGGCCCTGGCCGAGCAGTTTCCCATCGAGGTGCGCTCCACCGGAGTGTCGGTGGCGTATAACGTCACGGTCATGCTGTTCGGTGGCTTTGCGCCGTTGATCGTGACCTGGCTGAGCAAGGTCATGGCCACGCCGGTGGCGCCAGCCTTCTATGTCCTGCTGACCTCGGTCCTCAGCCTGCTGGGTACCTACTGCATGTATGACGCGGTCAGAGACGAAAAACCCGATGCCGTGAGCCTGGGAGGTGAGTCTTGA > 921 Pput_2610 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_001267929.1 11 MQTSSTGVSRTRQVVAAVIGNALEWYDFIVYGFLASIIARQFFPSDDAYASLLMALATFGVGFFMRPVGGVLLGMYSDRKGRKAAMQMIIRLMTVSIAMIAFAPDYLAIGMAAPLLIVVARMLQGFATGGEYASATAFLVESAPAHRKGLYGSWQLVGQCLAVFSGAAMVALVTHLCSPEALDSWGWRIPFVLGLLIGPVGLWIRKHMEEPEAFVEARRHAKGQSPGLWQVLREHRRSLLVSMGLACGATVSFYVVLVNMPTFAHKSLGLPLDQVLLVQMLAVGLMTLVIPLSGALSDRLGRRPVLMAFTLTFFVMVYPLYVWVAAAPSLERLLVMQLLLCTAIGGFFGPAPTALAEQFPVQVRSTGVSVAYNVAVMVFGGFAPLIVTWLTQVLGTPVAPAFYVLFACLLTLLGTYCLKEAPRAVKPAAFNLGVKP gamma_subgroup Pseudomonas_putida_F1 Pseudomonas_putida_F1 NC_009512 2973709..2975019 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Parales,R._and_Richardson,P. NA 0:1311 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000712.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000373Source_DNA_and_bacteria_available_from_Rebecca_Parales(reparales@ucdavis.edu)Contacts:_Rebecca_Parales_(reparales@ucdavis.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Pseudomonas_putida_F1_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_putida_A5W3N5_PSEP1.gb RNA_similarity_group_I 148545259 Unpublished NA NC_009512 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1311 NA genomic_DNA NA F1 NA bacterium_MASFP-4 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 351746 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas Complete_sequence_of_Pseudomonas_putida_F1 NA NC_009512.1 TCACGGTTTTACTCCAAGGTTGAAGGCGGCAGGCTTGACTGCCCGCGGTGCTTCTTTCAGGCAATAGGTGCCCAGCAATGTCAGCAGGCAGGCAAACAGCACGTAGAACGCCGGCGCCACTGGGGTGCCGAGCACCTGGGTGAGCCAGGTCACGATCAACGGGGCAAAGCCACCGAACACCATCACCGCCACGTTGTAGGCCACCGACACGCCGGTGGAACGCACCTGGACCGGGAACTGTTCGGCCAGGGCAGTAGGCGCCGGGCCGAAGAAACCACCGATGGCCGTGCACAACAGCAGTTGCATGACCAACAGGCGCTCCAGGGAAGGCGCAGCGGCCACCCACACATACAGTGGGTAGACCATCACGAAGAACGTCAGGGTGAAGGCCATCAGCACCGGGCGCCGCCCCAGCCGGTCAGACAGCGCCCCGGACAACGGAATCACGAGGGTCATCAGCCCCACGGCGAGCATCTGCACCAGCAGCACCTGGTCCAGCGGCAGGCCTAGGCTTTTGTGGGCGAAGGTCGGCATGTTCACCAGCACCACGTAGAACGATACCGTCGCGCCGCAGGCCAACCCCATCGACACCAGCAGGCTGCGCCGGTGTTCACGCAGCACCTGCCACAGGCCGGGCGACTGGCCCTTGGCATGGCGACGCGCCTCGACAAACGCCTCAGGCTCCTCCATATGCTTGCGGATCCACAGCCCGACCGGCCCGATCAGCAAGCCCAGCACGAACGGGATGCGCCAGCCCCAGCTGTCCAGCGCCTCAGGCGAGCACAGGTGGGTAACCAACGCCACCATTGCCGCCCCGGAAAAAACCGCCAGGCACTGCCCTACCAATTGCCACGAACCATACAGGCCCTTGCGGTGGGCAGGTGCGCTTTCCACCAGAAACGCCGTGGCGCTGGCGTATTCACCACCGGTGGCAAAGCCTTGCAGCATGCGCGCCACCACGATCAGCAGCGGCGCAGCCATGCCGATGGCCAGGTAGTCGGGTGCGAAGGCGATCATGGCGATGGACACGGTCATCAGGCGGATGATCATCTGCATGGCCGCCTTGCGGCCCTTGCGGTCGGAATACATGCCCAGCAGCACGCCGCCCACAGGGCGCATGAAAAACCCGACGCCGAAGGTGGCAAGGGCCATCAGCAGCGAGGCGTACGCGTCGTCGGACGGGAAGAACTGCCGGGCGATGATACTGGCCAGAAAGCCATACACGATAAAGTCATACCATTCCAGGGCGTTGCCGATAACGGCGGCCACCACTTGCCGGGTACGCGACACGCCGGTGCTCGAAGTCTGCAT > 922 PputGB1_3363 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_pen:PSEEN2013_major_facilitator_family_transporter major_facilitator_transporter YP_001669591.1 11 MAHSSSQAKKATASGWIGSALEYYDFFIYAQAAALIFPQIFFPNTDPKMAIIASLATYGVGYLARPVGAFVLGHWGDTRGRKNVLLLCMFLMGLSTMAVGLLPTYHDIGYLAPALLVVLRLIQGFAVAGEISGASSMIMEHAPFGRRGYYASFTLQGVQAGQVLAAAVFLPLAYFMPSEAFTEWGWRIPFLMSAIVLIAGFIIRKEVHETPAFVKEEKQDKVAKSPISEAFRHSWKHMVLVMFMALMNVIPVVATIFGAAYAVQPAYGIGFDKSVYLWIPVVGNIVAVLVIPFVGNLSDKIGRRPTMIAGCLGSGLLAFVYLYAISIQNVPMAFAASIVMWGMVYQGYNAVFPSFYPELFHTRYRVSAMAIAQNIGTMLTAMLPALFALVAPPGSDNIPLVVGSLAFFITCVCALAAYIAPETHRLAMEDLGNPAAKPMEKEAYEASRKGSFQAVSH gamma_subgroup Pseudomonas_putida_GB-1 Pseudomonas_putida_GB-1 NC_010322 3797618..3798991 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Bruce,D.,_Goodwin,L.,_Chertkov,O.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Kuske,C.R.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_McCarthy,J.K._and_Richardson,P. NA 0:1374 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000926.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4003030Source_DNA_and_bacteria_available_from_James_K._McCarthy(jmccarthy@ucsd.edu)Contacts:_James_K._McCarthy_(jmccarthy@ucsd.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 15-JUL-2011 Pseudomonas_putida_GB-1_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_putida_B0KJM7_PSEPG.gb RNA_similarity_group_I 167031021 Unpublished NA NC_010322 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1374 NA genomic_DNA NA GB-1 NA bacterium_MASFP-4 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 76869 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas Complete_sequence_of_Pseudomonas_putida_GB-1 NA NC_010322.1 ATGGCTCACTCCAGCTCGCAAGCAAAGAAAGCGACCGCCAGTGGATGGATAGGCTCGGCACTCGAGTACTACGACTTCTTCATCTATGCCCAGGCCGCTGCGCTGATTTTCCCGCAGATCTTCTTCCCCAATACCGACCCGAAAATGGCCATCATCGCCTCGTTGGCCACGTACGGCGTGGGCTACCTGGCGCGCCCGGTCGGCGCCTTCGTGTTGGGCCACTGGGGTGATACCCGCGGCCGCAAGAACGTCCTGCTGCTGTGCATGTTCCTGATGGGCCTGTCGACCATGGCCGTAGGCCTGCTGCCCACCTACCACGACATCGGTTATCTCGCACCGGCCTTGCTGGTGGTACTGCGCCTGATCCAGGGCTTTGCCGTGGCCGGGGAAATCTCCGGGGCCAGTTCCATGATCATGGAGCACGCGCCATTCGGCCGAAGAGGTTATTACGCCAGCTTCACCCTGCAGGGCGTGCAAGCGGGCCAAGTACTGGCGGCGGCGGTGTTCCTGCCACTGGCTTACTTCATGCCTAGCGAAGCCTTCACCGAATGGGGCTGGCGCATTCCGTTCCTGATGAGCGCCATCGTGCTGATTGCCGGCTTCATCATCCGTAAGGAAGTGCACGAAACCCCGGCGTTCGTGAAAGAAGAGAAACAGGACAAGGTTGCCAAGTCGCCAATCAGCGAAGCTTTCCGCCACAGCTGGAAGCACATGGTGCTGGTGATGTTCATGGCGCTGATGAACGTGATCCCGGTCGTGGCCACCATCTTCGGTGCCGCCTACGCGGTGCAGCCGGCGTATGGCATCGGTTTCGACAAGAGCGTGTACCTGTGGATACCGGTAGTGGGCAACATCGTCGCGGTGCTGGTGATCCCGTTCGTGGGTAACCTGTCGGACAAGATCGGCCGTCGCCCGACCATGATCGCCGGCTGCCTGGGCTCTGGTCTGCTGGCCTTCGTCTACCTGTATGCAATCAGCATCCAGAACGTGCCAATGGCGTTCGCCGCCTCGATCGTGATGTGGGGCATGGTGTATCAGGGTTACAACGCGGTGTTCCCAAGCTTCTACCCAGAACTGTTCCACACCCGCTACCGCGTTTCGGCCATGGCCATCGCGCAGAACATCGGCACCATGCTGACTGCCATGCTGCCGGCGCTGTTCGCACTGGTTGCCCCGCCTGGCTCGGACAATATCCCGCTGGTAGTCGGTAGCCTGGCGTTCTTCATCACCTGCGTGTGCGCCTTGGCGGCCTACATTGCCCCGGAAACCCACCGCCTGGCGATGGAAGACCTGGGTAACCCAGCGGCCAAGCCGATGGAGAAGGAAGCGTATGAAGCTAGCCGTAAAGGCAGCTTTCAGGCAGTGAGCCACTGA > 923 PputGB1_4111 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_pau:PA14_09740_putative_MFS_transporter major_facilitator_transporter YP_001670337.1 11 MTSPNVSIEDVPINNFHQWLTLRSGGGSFVDGYVLSIIGVAMVQMSAGLNLTSFWQGMIAASALIGIFFGGFFGGWLTDRFGRKRVFFVGPTLFILASVAQFWVESALVLFLLRFAIGIAVGIEYPVATSLLVEFLPRKNRGPRLATLTVLWFAGAATAYLAGEAILRHGGDDAWRLVLASAAVIGALLFAIRLGTPESPRWLISKGRSAEADEVIKRVYGQGFSLSNLPEEPKARKLSFLSLLHSGYGKRMLFVTMFWTCSVIPVFAVYAFAPKVLGALNLKGDWASIGSIAITFLFVVGCIVGTRLLNTIGRRTTLLHSFFWSGLALLGLGAFSNGNEMLILVLFGAYALFIGGAQVLQLVYPNELFPTEIRAGAVGVGTSMSRVGAAVGTWLVPIALDSYGIGATMYAAAAVTFVGLAFSVALAPETRSLNLQQAASLS gamma_subgroup Pseudomonas_putida_GB-1 Pseudomonas_putida_GB-1 NC_010322 4592365..4593693 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Bruce,D.,_Goodwin,L.,_Chertkov,O.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Kuske,C.R.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_McCarthy,J.K._and_Richardson,P. NA 0:1329 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000926.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4003030Source_DNA_and_bacteria_available_from_James_K._McCarthy(jmccarthy@ucsd.edu)Contacts:_James_K._McCarthy_(jmccarthy@ucsd.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 15-JUL-2011 Pseudomonas_putida_GB-1_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_putida_B0KSR5_PSEPG.gb RNA_similarity_group_I 167031021 Unpublished NA NC_010322 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1329 NA genomic_DNA NA GB-1 NA bacterium_MASFP-4 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 76869 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas Complete_sequence_of_Pseudomonas_putida_GB-1 NA NC_010322.1 TCAGCTCAGCGAAGCCGCTTGTTGCAGGTTCAGCGAGCGGGTTTCCGGGGCCAGGGCAACCGAGAAAGCCAGGCCGACGAAGGTCACGGCAGCGGCGGCGTACATGGTGGCGCCGATGCCGTAGCTATCGAGGGCGATGGGCACCAGCCAGGTGCCGACGGCGGCACCGACCCGCGACATGGAGGTGCCCACGCCCACGGCGCCGGCACGGATTTCGGTGGGGAACAATTCGTTGGGGTACACCAGCTGCAGCACCTGGGCGCCACCGATGAACAAGGCATAGGCACCAAACAGCACCAGGATGAGCATCTCGTTGCCGTTGCTGAAGGCACCCAGGCCCAGCAGCGCCAACCCCGACCAGAAGAAGCTGTGCAACAGCGTGGTGCGCCGGCCGATGGTGTTGAGCAGGCGGGTGCCCACAATACAGCCGACCACGAAGAGGAAGGTGATTGCAATGGAGCCGATCGATGCCCAGTCACCTTTGAGGTTCAGCGCGCCCAGCACTTTCGGGGCGAATGCGTACACCGCAAACACAGGGATCACCGAGCAGGTCCAGAACATGGTGACGAACAACATGCGCTTGCCATAGCCGGAGTGCAGCAGGCTGAGGAACGACAGTTTGCGGGCCTTGGGCTCTTCCGGCAGGTTGCTCAGCGAAAACCCCTGGCCGTAGACGCGCTTGATCACCTCATCGGCCTCGGCCGAGCGGCCCTTGCTGATCAGCCAGCGTGGCGATTCGGGAGTACCCAGGCGGATGGCGAACAGCAGCGCACCGATCACTGCGGCGCTGGCCAGCACCAGGCGCCAGGCATCGTCGCCGCCGTGGCGAAGGATGGCCTCACCCGCCAGATAGGCAGTGGCGGCGCCGGCAAACCACAACACCGTCAGGGTAGCCAGGCGCGGGCCACGGTTCTTCCTGGGCAGAAACTCCACCAGCAGCGACGTGGCGACCGGATATTCGATACCCACGGCAATACCGATGGCGAACCGCAGCAGGAACAATACCAGCGCCGACTCGACCCAGAACTGCGCGACCGAAGCCAGGATGAACAAGGTCGGGCCAACGAAGAACACGCGCTTGCGGCCGAAGCGGTCGGTCAGCCAACCGCCGAAGAAACCACCGAAGAAAATGCCGATCAACGCCGAGGCGGCGATCATGCCCTGCCAGAAACTGGTCAGGTTGAGCCCTGCGGACATCTGCACCATGGCCACGCCGATGATGCTCAGTACATAGCCGTCGACGAACGAGCCGCCACCGGAGCGCAGGGTCAGCCACTGGTGGAAGTTGTTGATCGGTACATCTTCAATCGAAACATTCGGACTTGTCAT > 924 PputW619_1018 TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_pen:PSEEN1166_dicarboxylic_acid_transport_protein;_alpha-ketoglutarate_permease_(MFS_superfamily) major_facilitator_superfamily_metabolite/H(+)_symporter YP_001747892.1 11 MTSTYYTGEERSKRIFAIVGASSGNLVEWFDFYVYAFCAIYFAPAFFPSDDPTVQLLNTAGVFAAGFLMRPIGGWIFGRLADRHGRKNSLMISVLMMCFGSLMIACLPTYSSIGTWAPALLLLARLIQGLSVGGEYGTTATYMSEVALRGQRGFFASFQYVTLIGGQLLAVLVVVILQQLLTEDELRAWGWRIPFVVGSIAALISLMLRRSLHETSSAETRKDKDAGSIKGLFRNHTAAFITVLGYTAGGSLIFYTFTTYMQKYLVNTAGMTAKNASFVMTGALFLYMVMQPFFGMLSDRIGRRNSMLLFGALGTLFTVPLLMALKTVSSPFMAFVLVTLALCIVSFYTSISGLVKAEMFPPQVRALGVGLAYAVANAMFGGSAEYVALGLKSLGMENTFYWYVTAMMAIAFLFSLRLPKQAAYLHHDD gamma_subgroup Pseudomonas_putida_W619 Pseudomonas_putida_W619 NC_010501 1119691..1120980 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_Taghavi,S.,_Vangronsveld,D.,_van_der_Lelie,D._and_Richardson,P. NA 0:1290 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000949.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002720Source_DNA_and_Bacteria_available_from_Daniel_van_der_Lelie(vdlelied@bnl.gov)_and_Safiyh_Taghavi(taghavis@bnl.gov)Contacts:_Daniel_van_der_Lelie_(vdlelied@bnl.gov)_Safiyh_Taghavi_(taghavis@bnl.gov)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Pseudomonas_putida_W619_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_putida_B1J3T1_PSEPW.gb RNA_similarity_group_I 170719187 Unpublished NA NC_010501 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1290 NA genomic_DNA NA W619 NA bacterium_MASFP-4 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 390235 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas Complete_sequence_of_Psuedomonas_putida_W619 NA NC_010501.1 ATGACCTCAACCTATTACACCGGCGAAGAGCGCAGTAAGCGCATCTTCGCCATCGTCGGTGCCTCTTCAGGCAACCTGGTGGAATGGTTCGACTTCTATGTCTACGCCTTCTGTGCAATCTATTTTGCCCCGGCCTTCTTCCCCTCTGACGACCCCACTGTTCAATTGCTCAATACCGCTGGCGTGTTCGCCGCTGGCTTCCTGATGCGGCCTATCGGTGGCTGGATCTTCGGTCGCCTGGCGGACCGCCATGGCCGCAAGAATTCCCTGATGATCTCGGTGCTGATGATGTGCTTCGGCTCCTTGATGATTGCCTGTTTACCCACCTACTCGAGCATTGGCACCTGGGCCCCGGCGCTGCTGTTGCTGGCCCGTTTGATCCAGGGCCTGTCGGTAGGCGGTGAGTACGGCACTACCGCGACCTACATGAGTGAAGTAGCGCTGCGCGGCCAGCGCGGCTTCTTTGCTTCCTTCCAGTACGTCACGCTGATCGGTGGCCAACTGCTTGCCGTGCTGGTGGTGGTGATCCTCCAACAATTGCTGACCGAAGACGAACTGCGCGCCTGGGGCTGGCGCATTCCGTTCGTGGTCGGTTCCATTGCTGCGCTGATCTCGCTGATGCTGCGCCGCTCGCTGCACGAGACCAGCAGCGCCGAAACCCGCAAGGACAAGGACGCTGGCTCCATCAAAGGCCTGTTCCGCAACCACACGGCTGCCTTCATCACCGTGCTCGGCTATACCGCCGGTGGCTCGCTGATCTTCTATACCTTCACTACGTACATGCAGAAGTACCTGGTCAACACTGCGGGCATGACCGCGAAGAACGCCAGCTTCGTGATGACCGGCGCCTTGTTCCTGTACATGGTGATGCAGCCGTTCTTCGGCATGCTCTCCGACCGTATCGGGCGACGTAACTCGATGCTGCTGTTCGGTGCCTTGGGGACGCTGTTCACCGTGCCGTTGCTGATGGCGTTGAAGACCGTCAGCAGCCCGTTCATGGCCTTCGTACTGGTGACCCTGGCACTGTGCATCGTCAGTTTCTACACCTCGATCAGTGGCCTGGTGAAGGCCGAGATGTTCCCGCCGCAGGTGCGTGCGCTTGGTGTAGGCCTGGCTTACGCGGTAGCCAACGCAATGTTCGGCGGCTCGGCCGAGTATGTGGCCCTGGGCTTGAAAAGCCTGGGTATGGAGAACACCTTTTACTGGTACGTGACGGCGATGATGGCAATCGCGTTCCTGTTCAGCCTGCGTCTGCCTAAACAGGCGGCGTACCTGCACCATGATGATTAA > 925 PP_2914 similar_to_GP:1661219;_identified_by_sequence_similarity proline/glycine_betaine_transporter NP_745058.1 11 MKPRKKSVQPIGLKDITIVDDAKMKKAITAAALGNAMEWFDFGVYGFVAYALGKVFFPNADPSVQMIAALATFSVPFLIRPLGGLFFGALGDRFGRQKILAATIVIMSLSTFAIGLIPSYASIGIWAPILLLLAKMAQGFSVGGEYTGASIFVAEYAPDRKRGFLGSWLDFGSIAGFVLGAGVVVLISTVLGEEKFLDWGWRLPFFLALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLASGPKVSFKEVATQHWRSLVTCIGVVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMVGMLFVQPIIGLLSDKFGRRPFIIVGSVGLLALAIPAFMLINSGVLGLIFAGLLIIAVLLNFFIGVMASTLPAMFPTHIRYSALASAFNISVLIAGLTPTLAAWLVETTNDLYMPAYYLMVIAAVGLVTGLTMKETANKPLRGAAPAASDIEEARELLQEHHDNIEQKIEDIDAQIAELEAKREKLALQHPRIE gamma_subgroup Pseudomonas_putida_KT2440 Pseudomonas_putida_KT2440 NC_002947 3313951..3315453 Nelson,K.,_Paulsen,I.,_Weinel,C.,_Dodson,R.,_Hilbert,H.,_Fouts,D.,_Gill,S.,_Pop,M.,_Martins_Dos_Santos,V.,_Holmes,M.,_Brinkac,L.,_Beanan,M.,_DeBoy,R.,_Daugherty,S.,_Kolonay,J.,_Madupu,R.,_Nelson,W.,_White,O.,_Peterson,J.,_Khouri,H.,_Hance,I.,_Lee,P.,_Holtzapple,E.,_Scanlan,D.,_Tran,K.,_Moazzez,A.,_Utterback,T.,_Rizzo,M.,_Lee,K.,_Kosack,D.,_Moestl,D.,_Wedler,H.,_Lauber,J.,_Hoheisel,J.,_Straetz,M.,_Heim,S.,_Kiewitz,C.,_Eisen,J.,_Timmis,K.,_Duesterhoft,A.,_Tummler,B._and_Fraser,C. NA 0:1503 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE015451.On_Dec_16,_2002_this_sequence_version_replaced_gi:21264309.COMPLETENESS:_full_length. NA 20-JAN-2012 Pseudomonas_putida_KT2440_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_putida_Q88IT5_PSEPK.gb RNA_similarity_group_I 26986745 Environ._Microbiol._4_(12),_799-808_(2002) NA NC_002947 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 12534463 1503 NA genomic_DNA NA KT2440 NA bacterium_MASFP-4 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 160488 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas Complete_genome_sequence_and_comparative_analysis_of_the_metabolically_versatile_Pseudomonas_putida_KT2440 NA NC_002947.3 ATGAAACCTCGCAAGAAAAGCGTCCAGCCAATCGGCCTGAAGGACATCACCATCGTCGACGACGCCAAGATGAAGAAGGCGATCACAGCCGCCGCGCTGGGCAACGCCATGGAGTGGTTCGACTTTGGGGTATATGGCTTCGTCGCTTATGCCTTGGGCAAGGTGTTTTTCCCCAACGCCGACCCCAGCGTGCAAATGATCGCGGCCTTGGCCACCTTCTCGGTACCGTTCCTGATCCGGCCTCTTGGCGGGTTGTTCTTCGGCGCCTTGGGCGACAGGTTCGGGCGGCAGAAAATCCTCGCCGCGACCATCGTGATCATGTCCCTGAGCACCTTCGCCATCGGCCTGATACCGTCCTATGCAAGCATTGGTATCTGGGCGCCGATCCTGTTGCTGCTGGCCAAGATGGCCCAGGGCTTTTCGGTGGGTGGCGAATACACCGGTGCCTCGATTTTCGTTGCCGAGTACGCGCCTGACCGCAAGCGCGGCTTTCTCGGCAGCTGGCTGGATTTCGGTTCGATTGCCGGCTTTGTACTGGGCGCAGGGGTGGTGGTGCTCATTTCCACGGTGCTGGGTGAAGAAAAATTCCTCGACTGGGGCTGGCGCCTGCCGTTCTTCCTGGCCCTGCCGCTGGGCATCATCGGCCTTTACCTGCGCCATGCGCTGGAAGAAACACCTGCGTTCCAGCAGCACGTCGACAAGCTGGAGCAGGGCGATCGTGAAGGCCTGGCGTCCGGGCCCAAGGTGTCGTTCAAGGAGGTGGCCACCCAGCACTGGCGCAGCCTGGTGACCTGCATCGGCGTGGTAATTGCCACCAATGTCACCTACTACATGCTGCTTACCTACATGCCCAGCTACCTGTCGCACAACCTGCACTACAGCGAAGACCATGGCGTGCTGATCATCATCGCGATCATGGTCGGCATGCTGTTCGTGCAGCCGATCATCGGCCTGCTCAGCGACAAGTTTGGCCGACGGCCGTTCATCATTGTCGGCAGTGTCGGCCTGCTGGCCTTGGCCATTCCGGCATTCATGCTCATCAACAGTGGGGTGCTAGGGCTTATTTTCGCCGGCCTGCTGATCATTGCCGTGCTGCTGAACTTCTTCATCGGTGTGATGGCCTCGACGCTGCCGGCCATGTTCCCCACGCACATCCGTTACAGCGCCCTGGCCAGCGCTTTCAACATCTCGGTGCTGATCGCCGGCCTTACCCCAACCCTCGCTGCGTGGCTGGTGGAGACCACAAACGACCTGTACATGCCGGCCTATTACCTGATGGTGATCGCCGCTGTCGGCCTGGTCACCGGCCTGACCATGAAGGAAACCGCCAACAAGCCCCTGCGCGGCGCGGCACCCGCGGCATCGGACATCGAAGAGGCGCGTGAACTGCTACAGGAGCACCACGACAACATCGAGCAGAAGATCGAGGACATCGATGCGCAGATCGCCGAGCTGGAAGCCAAGCGCGAGAAACTGGCACTGCAGCACCCGCGCATCGAATGA > 926 PP_1458 identified_by_match_to_PFAM_protein_family_HMM_PF03605 metabolite-proton_symporter NP_743616.1 11 MTSSTYAQAPAAPVNSPARVATASFIGTAIEFYDFYVYATAAALVIGPVFFPSGSGTAQMLAAFLTFGIAFLARPLGSALFGHFGDRIGRKSTLVASLLLMGVSTTAIGVLPGYDSIGVWAPIILCLLRFGQGLGLGGEWGGAALLATENAPEGKRAWFGMFPQLGPSIGFLAANGLFLTLALVLSDEQFREWGWRIPFLLSAALVLVGLYVRLKLEESPVFAKAVARHERVKMPVVDLFSKYWLPTLLGAAAMVVCYALFYISTVFSLSYGVTTLGYSRETFLGLLCFAVVFMALATPLSAWLSDRYGRKPVLIVGGLLAIASGFTMEPLLTSGSTAGVALFLAIELFLMGVTFAPMGALLPELFPTHVRYTGASAAYNLGGIVGASAAPFFAQKLVSMGGLSWVGGYVSVAAVISLIAVLCLKETRNTTL gamma_subgroup Pseudomonas_putida_KT2440 Pseudomonas_putida_KT2440 NC_002947 1663088..1664386 Nelson,K.,_Paulsen,I.,_Weinel,C.,_Dodson,R.,_Hilbert,H.,_Fouts,D.,_Gill,S.,_Pop,M.,_Martins_Dos_Santos,V.,_Holmes,M.,_Brinkac,L.,_Beanan,M.,_DeBoy,R.,_Daugherty,S.,_Kolonay,J.,_Madupu,R.,_Nelson,W.,_White,O.,_Peterson,J.,_Khouri,H.,_Hance,I.,_Lee,P.,_Holtzapple,E.,_Scanlan,D.,_Tran,K.,_Moazzez,A.,_Utterback,T.,_Rizzo,M.,_Lee,K.,_Kosack,D.,_Moestl,D.,_Wedler,H.,_Lauber,J.,_Hoheisel,J.,_Straetz,M.,_Heim,S.,_Kiewitz,C.,_Eisen,J.,_Timmis,K.,_Duesterhoft,A.,_Tummler,B._and_Fraser,C. NA 0:1299 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE015451.On_Dec_16,_2002_this_sequence_version_replaced_gi:21264309.COMPLETENESS:_full_length. NA 20-JAN-2012 Pseudomonas_putida_KT2440_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_putida_Q88MW0_PSEPK.gb RNA_similarity_group_I 26986745 Environ._Microbiol._4_(12),_799-808_(2002) NA NC_002947 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 12534463 1299 NA genomic_DNA NA KT2440 NA bacterium_MASFP-4 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 160488 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas Complete_genome_sequence_and_comparative_analysis_of_the_metabolically_versatile_Pseudomonas_putida_KT2440 NA NC_002947.3 TTACAGCGTGGTATTGCGCGTCTCTTTCAGGCACAGCACGGCAATCAGGCTGATCACCGCCGCCACCGACACATAACCCCCCACCCAGCTCAAACCCCCCATGCTCACCAGCTTCTGGGCAAAGAACGGTGCTGCCGAGGCGCCGACGATACCGCCCAGGTTATACGCCGCCGAGGCACCGGTATAACGCACGTGGGTCGGGAACAGCTCTGGCAGCAGTGCACCCATCGGCGCGAAGGTCACGCCCATCAGGAACAGCTCGATGGCCAGGAACAGCGCCACGCCTGCAGTCGATCCCGAGGTCAGCAGTGGCTCCATGGTAAAGCCCGAAGCTATCGCCAGCAGGCCGCCGACGATCAGTACCGGCTTGCGCCCGTAACGGTCACTGAGCCAGGCCGACAACGGTGTGGCCAGTGCCATGAACACCACCGCGAAACACAGCAGGCCAAGGAACGTTTCGCGGCTGTAGCCCAGTGTGGTTACGCCGTAGCTCAGCGAGAACACCGTGGAAATGTAGAACAGCGCATAGCACACCACCATGGCCGCAGCGCCCAGCAGGGTTGGCAGCCAGTATTTGGAGAACAGGTCGACCACCGGCATTTTCACCCGCTCGTGGCGGGCAACGGCCTTGGCGAACACCGGGCTCTCTTCGAGCTTCAGGCGCACGTACAGGCCTACCAGTACCAGTGCGGCGCTGAGCAGGAACGGAATGCGCCAGCCCCACTCGCGGAACTGCTCGTCGCTGAGCACCAGGGCCAGGGTCAGAAACAGGCCGTTGGCCGCCAGGAAGCCGATTGACGGGCCCAACTGCGGGAACATGCCGAACCAGGCCCGCTTGCCTTCCGGGGCGTTTTCGGTAGCCAGCAGGGCCGCGCCACCCCATTCGCCGCCCAGGCCCAGGCCTTGGCCAAAACGCAGCAGGCAGAGAATGATCGGCGCCCACACGCCAATGCTGTCATAGCCTGGCAGCACGCCAATGGCGGTGGTGGATACGCCCATCAGCAGCAGCGAGGCGACCAGCGTGGATTTGCGACCGATACGGTCGCCAAAATGGCCGAACAATGCCGAGCCCAGTGGCCGGGCGAGGAAGGCGATACCGAAGGTGAGGAAGGCGGCCAGCATTTGCGCGGTGCCCGACCCGGACGGGAAGAACACCGGGCCGATCACCAAGGCTGCGGCGGTGGCGTAGACGTAGAAATCATAGAACTCGATGGCGGTGCCGATGAAGCTGGCAGTGGCTACCCGCGCAGGCGAGTTGACTGGCGCGGCAGGCGCTTGGGCATAAGTGCTGCTTGTCAT > 927 PSPTOT1_5302 NA citrate_transporter EEB58731.1 11 MNGSSPHKAASARSRAGAVFRVTSGNFLEQFDFFLFGFYATQIASAFFPATSEFASLMMTFAVFGAGFLMRPLGAVILGAYIDDVGRRKGLIVTLSIMASGTLLIVLVPGYATIGLWAPALVLLGRLLQGFSAGAELGGVSVYLAEMATPGRKGFYTSWQSGSQQVAIIVAAALGYALNQWMAPAAVADWGWRIPFAIGCLIIPFIFLLRRSLQETEEFATRSHRPSMREVFATLLQNWRVVIAGMLMVAMTTTTFYLITIYAPTFGKTVLNLSTADALLVTLLVGVSNFIWLPIGGMLSDRFGRKPLLVAMTLLTILSAYPALSFLAQAPSFGHMLEVLLWFSCLYGLYNGAMIPALTEIMPVEVRVAGFSLAYSLATAVFGGFTPAISTWLIHLTGDKAAPAYWMTFAAVCALGATLVLYRHISARPQLAV gamma_subgroup Pseudomonas_syringae_pv._tomato_T1 Pseudomonas_syringae_pv._tomato_T1 ABSM01000020 50277..51578 Almeida,N.F.,_Yan,S.,_Lindeberg,M.,_Studholme,D.J.,_Schneider,D.J.,_Condon,B.,_Liu,H.,_Viana,C.J.,_Warren,A.,_Evans,C.,_Kemen,E.,_Maclean,D.,_Angot,A.,_Martin,G.B.,_Jones,J.D.,_Collmer,A.,_Setubal,J.C._and_Vinatzer,B.A. NA 0:1302 Source_DNA_is_available_from_Boris_Vinatzer,_vinatzer@vt.eduThis_version_of_the_project,_454-1,_represents_20x_coverage_of_thegenome. NA 21-NOV-2008 Pseudomonas_syringae_pv._tomato_T1_ptot1_ctg00121,_whole_genome_shotgun_sequence. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_syringae_E2MGZ7_PSESM.gb RNA_similarity_group_I 213925119 Mol._Plant_Microbe_Interact._22_(1),_52-62_(2009) NA ABSM01000020 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19061402 1302 NA genomic_DNA NA T1 NA Pseudomonas_syringae_group_genomosp._3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 546231 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas A_draft_genome_sequence_of_Pseudomonas_syringae_pv._tomato_T1_reveals_a_type_III_effector_repertoire_significantly_divergent_from_that_of_Pseudomonas_syringae_pv._tomato_DC3000 NA ABSM01000020.1 ATGAATGGCTCATCCCCTCATAAAGCTGCGTCCGCCCGGTCTCGGGCCGGAGCAGTGTTTCGCGTCACGTCAGGCAATTTCCTCGAACAATTCGATTTCTTCCTGTTCGGCTTCTACGCCACTCAAATCGCCTCGGCCTTCTTTCCCGCGACCAGCGAGTTCGCCTCGTTGATGATGACCTTTGCGGTCTTTGGCGCGGGTTTCCTGATGCGTCCCTTGGGTGCGGTGATTCTTGGCGCTTATATAGACGACGTCGGCCGCCGCAAAGGCTTGATCGTGACCCTGTCGATCATGGCCAGTGGCACGCTGCTCATTGTGCTGGTGCCCGGCTACGCGACTATCGGGCTCTGGGCACCTGCACTGGTCTTGCTGGGGCGTCTGCTGCAGGGGTTCTCTGCCGGAGCCGAGCTGGGCGGGGTGTCGGTGTATCTGGCCGAAATGGCCACGCCGGGTCGCAAAGGCTTCTATACCAGCTGGCAATCCGGCAGTCAGCAGGTGGCGATCATTGTCGCGGCTGCGCTGGGTTACGCCCTCAACCAGTGGATGGCCCCTGCTGCGGTGGCTGACTGGGGCTGGAGAATTCCATTCGCCATCGGTTGCCTGATCATCCCGTTTATTTTCCTGCTGCGTCGCAGCCTTCAGGAAACCGAAGAGTTCGCCACCCGCTCACACCGCCCGAGCATGCGGGAGGTCTTCGCGACCCTGTTGCAGAACTGGCGCGTGGTCATCGCCGGGATGCTGATGGTTGCGATGACGACTACCACGTTTTACCTGATCACCATCTATGCACCGACCTTTGGTAAAACCGTGCTGAACCTGAGTACCGCCGATGCTCTGCTGGTGACCTTGCTGGTCGGTGTGTCCAATTTTATCTGGCTGCCCATCGGCGGCATGCTGAGCGACCGTTTCGGGCGCAAGCCGCTGCTGGTGGCAATGACCTTGCTGACCATTCTCAGTGCTTACCCGGCGCTGTCCTTTCTCGCTCAGGCCCCCAGCTTCGGCCACATGCTGGAAGTGCTGCTGTGGTTCTCGTGCCTCTACGGTTTGTACAACGGCGCGATGATCCCTGCGCTGACTGAAATCATGCCGGTGGAGGTTCGCGTTGCCGGTTTTTCCCTGGCCTACAGCCTGGCGACCGCGGTTTTCGGAGGCTTCACTCCGGCCATATCCACATGGCTGATCCACCTGACCGGCGACAAGGCTGCGCCTGCGTACTGGATGACTTTCGCTGCGGTGTGCGCCCTGGGCGCGACACTGGTGCTGTACCGGCACATTTCAGCTCGCCCGCAATTGGCCGTGTAA > 928 PSPPH_2870 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter YP_275054.1 11 MNSSPRTGAPKGEQLRAAYISARIDRLPAVATIWKLVALLSVAGFFELYDLFQTAYISPGLIRDGIFATGNQGLFGFSDQAAFASATFLGLFFGASLVSPIADRYGRRAIFTFALIWYTIATVIMGLQTSALGVIGMRFLVGIGLGVELVTIDTYLSELVPKRIRSSAFAFAFFIQFLSVPSVALMSWWLVPQAPFGFSGWRWVVIGSAVFALFVWWLRSALPESPRWLAQQGRFDEAELIMDGIEARCIKDQGKPLDEPEPEKVALSGNGRFADMWQPPYRRRALMLIVFHLLQAIGFFGFGNWLPALLSGQGLSVTHSLGYAFVITLAYPLGPLLFVKFANRFENKWQIVGSALGAMIFGSLFAFQTSAAGLIFCGIMITFCNAWLSFSYHSYQGELFPTNIRARAVGFCYSFSRLSTVFSSLLIGIFLDHFGTPGVLAFIVGSMLIVIITIGRFGPRTRNLALEQIAHR gamma_subgroup Pseudomonas_syringae_pv._phaseolicola_1448A Pseudomonas_syringae_pv._phaseolicola_1448A NC_005773 3314498..3315916 Joardar,V.,_Lindeberg,M.,_Jackson,R.W.,_Selengut,J.,_Dodson,R.,_Brinkac,L.M.,_Daugherty,S.C.,_Deboy,R.,_Durkin,A.S.,_Giglio,M.G.,_Madupu,R.,_Nelson,W.C.,_Rosovitz,M.J.,_Sullivan,S.,_Crabtree,J.,_Creasy,T.,_Davidsen,T.,_Haft,D.H.,_Zafar,N.,_Zhou,L.,_Halpin,R.,_Holley,T.,_Khouri,H.,_Feldblyum,T.,_White,O.,_Fraser,C.M.,_Chatterjee,A.K.,_Cartinhour,S.,_Schneider,D.J.,_Mansfield,J.,_Collmer,A._and_Buell,C.R. NA 0:1419 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000058.On_Aug_3,_2005_this_sequence_version_replaced_gi:51904981.COMPLETENESS:_full_length. NA 21-JAN-2012 Pseudomonas_syringae_pv._phaseolicola_1448A_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_syringae_Q48HS9_PSE14.gb RNA_similarity_group_I 71733195 J._Bacteriol._187_(18),_6488-6498_(2005) NA NC_005773 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 16159782 1419 NA genomic_DNA NA 1448A;_BAA-978 NA Pseudomonas_syringae_subsp._savastanoi NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 264730 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas,_Pseudomonas_savastanoi Whole-genome_sequence_analysis_of_Pseudomonas_syringae_pv._phaseolicola_1448A_reveals_divergence_among_pathovars_in_genes_involved_in_virulence_and_transposition NA NC_005773.3 ATGAACTCATCACCTCGCACAGGTGCACCCAAGGGCGAACAGCTGCGGGCAGCGTATATCTCGGCGCGTATTGATCGACTGCCTGCGGTTGCCACTATCTGGAAACTGGTCGCCCTGCTGTCTGTCGCCGGTTTTTTCGAGCTTTACGACCTGTTTCAGACGGCCTATATCAGCCCCGGCCTGATTCGCGACGGAATCTTTGCCACGGGAAACCAGGGCCTGTTCGGCTTTTCCGATCAGGCAGCCTTTGCCTCGGCGACCTTTCTGGGTCTGTTTTTCGGTGCCAGTCTGGTTAGCCCGATTGCCGACCGTTACGGTCGCCGCGCAATTTTTACCTTCGCGCTGATCTGGTACACCATTGCCACGGTGATCATGGGTCTGCAGACCTCCGCTCTGGGCGTGATTGGCATGCGCTTTTTAGTGGGTATCGGCCTGGGCGTCGAGCTGGTGACCATCGACACTTACCTGTCGGAACTGGTGCCCAAACGCATACGCAGTTCGGCGTTCGCCTTCGCATTTTTCATCCAGTTTCTGTCAGTCCCCAGCGTGGCGCTAATGTCATGGTGGCTGGTGCCCCAGGCACCCTTCGGCTTTTCCGGATGGCGCTGGGTGGTGATTGGCAGCGCGGTATTTGCGCTGTTTGTCTGGTGGCTGCGTTCAGCACTGCCAGAATCACCTCGCTGGCTGGCGCAGCAGGGGCGTTTCGACGAAGCCGAACTGATCATGGACGGAATTGAAGCACGTTGTATCAAAGACCAGGGCAAGCCGCTGGATGAACCTGAACCGGAGAAAGTCGCGCTGTCAGGCAACGGCCGCTTCGCTGATATGTGGCAACCGCCATACCGTCGTCGTGCACTGATGCTGATCGTATTTCACCTCTTGCAGGCCATTGGCTTCTTCGGCTTCGGTAACTGGCTACCCGCCCTGCTTTCCGGCCAGGGCCTTAGTGTCACACACAGCCTGGGGTACGCGTTCGTGATCACGCTGGCCTACCCGCTCGGCCCGCTGCTGTTCGTGAAATTTGCCAACCGCTTCGAGAACAAATGGCAAATCGTCGGCTCAGCGTTGGGAGCGATGATCTTCGGCAGCCTGTTTGCCTTCCAGACCAGCGCGGCAGGCCTTATTTTCTGCGGGATCATGATCACATTCTGCAACGCATGGCTGAGCTTCAGTTATCACTCGTATCAGGGCGAGTTGTTTCCGACCAACATCCGCGCACGTGCCGTGGGCTTTTGCTACTCGTTCAGCCGCCTGTCAACGGTGTTCAGCAGCCTGCTGATCGGGATTTTCCTCGACCACTTCGGCACACCGGGCGTACTGGCGTTCATCGTTGGCAGCATGCTGATCGTGATCATCACCATTGGCCGGTTCGGACCACGTACACGCAATCTGGCGCTGGAGCAGATAGCCCACCGTTGA > 929 Psyr_2179 NA major_facilitator_transporter YP_235260.1 11 MSASTSDSTRHTEKSDQMKSPNRVRAIMGACSGNLVEWYDFFIYAYTAIYFASSFFPKGDTTSQLLATAGVFAVGFFMRPLGGWIFGWIADTRGRKVSMIISVFMMCAGSLLIAVMPTYETIGVAAPVLLVVARLIQGLSVGAEYGTGATYISEIATPGRRCFYGSFQYFTIIAGQLLALMTVVILQQTLTGEELREWGWRIPFFIGAFSSIVVVYLRRAMHETATKKEMNRKDAGSLRGMFKHKRAVALVVAFTIGGSLYFYTFTTYMQKFLVISAGFSPETVSFIMTAALVGFMFCQPLFGLLADRIGIKVHMLLFSGLAMLLVIPLLYSLQSVSSPFTAFLLVFGGLAIASLYTPIAGIVKAELFPPAVRALGVGFPYAVGNAAFGGTAEYVALSLRSQGIEEYFFFYVAAVVTITFIAATLMPNLSRYGYISGSGEIEERTGLRGCIKSQAARI gamma_subgroup Pseudomonas_syringae_pv._syringae_B728a Pseudomonas_syringae_pv._syringae_B728a NC_007005 2532242..2533618 Feil,H.,_Feil,W.S.,_Chain,P.,_Larimer,F.,_DiBartolo,G.,_Copeland,A.,_Lykidis,A.,_Trong,S.,_Nolan,M.,_Goltsman,E.,_Thiel,J.,_Malfatti,S.,_Loper,J.E.,_Lapidus,A.,_Detter,J.C.,_Land,M.,_Richardson,P.M.,_Kyrpides,N.C.,_Ivanova,N._and_Lindow,S.E. NA 0:1377 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000075.COMPLETENESS:_full_length. NA 20-JAN-2012 Pseudomonas_syringae_pv._syringae_B728a_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_syringae_Q4ZUF0_PSEU2.gb RNA_similarity_group_I 66043271 Proc._Natl._Acad._Sci._U.S.A._102_(31),_11064-11069_(2005) NA NC_007005 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 16043691 1377 NA genomic_DNA NA B728a NA Pseudomonas_syringae_van_Hall_1902 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 205918 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas,_Pseudomonas_syringae Comparison_of_the_complete_genome_sequences_of_Pseudomonas_syringae_pv._syringae_B728a_and_pv._tomato_DC3000 NA NC_007005.1 TCAGATCCTGGCAGCCTGCGATTTGATGCAGCCCCTCAGTCCGGTGCGTTCTTCGATCTCACCCGAGCCGCTGATGTAACCATAGCGGGACAGGTTGGGCATTAGCGTCGCTGCGATGAACGTGATGGTTACTACGGCCGCGACGTAGAAGAAGAAATACTCCTCAATACCCTGCGACCGAAGCGACAAGGCGACGTATTCGGCGGTGCCACCGAATGCCGCGTTGCCGACGGCATAAGGAAAGCCCACACCCAATGCACGTACCGCTGGCGGGAACAGTTCAGCTTTGACGATACCGGCAATCGGGGTGTAGAGCGACGCGATTGCCAGGCCGCCAAATACCAGCAGGAACGCTGTAAATGGACTGCTGACTGATTGCAGTGAATAGAGCAGGGGGATCACCAGTAGCATGGCCAACCCGGAAAACAACAACATATGGACCTTGATTCCGATTCGGTCGGCGAGCAGACCAAAGAGTGGCTGACAAAACATGAAACCGACCAGGGCGGCCGTCATGATGAAGCTCACCGTTTCCGGACTAAACCCCGCAGAGATCACCAGAAATTTCTGCATGTAGGTGGTGAAGGTGTAGAAGTAAAGTGAACCGCCAATGGTAAACGCGACCACCAGTGCCACTGCGCGTTTGTGTTTGAACATGCCACGTAGCGAGCCGGCATCTTTGCGGTTCATTTCTTTTTTTGTGGCGGTTTCATGCATCGCGCGACGCAAATACACGACTACGATAGAACTAAAGGCGCCGATGAAAAAAGGAATTCTCCAGCCCCATTCCCGCAATTCCTCGCCGGTAAGGGTTTGTTGAAGTATGACCACGGTCATCAGGGCGAGGAGTTGGCCTGCGATGATGGTGAAGTACTGGAATGATCCATAGAAACAACGACGCCCAGGTGTCGCGATTTCACTGATGTAGGTGGCGCCGGTGCCGTACTCCGCGCCGACTGACAGACCCTGAATCAGCCTGGCAACGACAAGCAAAACTGGCGCCGCCACACCGATGGTTTCATAGGTCGGCATGACGGCAATCAACAAGGAACCGGCGCACATCATGAACACCGAGATAATCATCGATACCTTGCGGCCGCGGGTATCAGCAATCCAGCCAAAAATCCAACCGCCGAGCGGCCGCATGAAAAAGCCGACGGCGAAGACGCCGGCGGTTGCGAGCAACTGACTGGTGGTGTCGCCTTTGGGGAAAAACGAGCTCGCAAAATAGATGGCGGTATAGGCGTAAATGAAAAAGTCGTACCACTCCACCAGATTGCCCGAGCAGGCACCCATGATGGCTCTGACACGATTCGGACTTTTCATCTGATCGGACTTTTCAGTGTGGCGTGTTGAGTCGCTGGTTGATGCAGACAT > 930 PSPTO_4296 see_PMID:20190049_for_expression_data;_similar_to_GP:15159267;_identified_by_sequence_similarity metabolite-proton_symporter NP_794052.1 11 METSNPASNGPAASIAGQKTTSSRLKSIFSGSVGNMVEWYDWYVYAAFSLYFAKAFFPKGDTTAQLLNTAAIFAVGFLMRPIGGWLMGLYADYKGRKAALMASVLLMCFGSLIIALTPGYESIGVGAPILLVFARLLQGLSVGGEYGTSATYLSEMATKERRGFFSSFQYVTLISGQLIALAVLIVLQQTLTTEQLYAWGWRIPFVIGALCAVVALFLRRGMEETESFTRKKKEKRKESLMRTLIRHPKELMTVVGLTMGGTLAFYTYTTYMQKYLVNTVGMSITDSTSISAATLFLFMLLQPVVGALSDKIGRRPILIAFGVLGTLCTVPILTTLHTIQTWWGAFFLIMAALIIVSGYTSINAVVKAELFPTEIRALGVGLPYALTVSIFGGTAEYIALWFKSIGMETGYYWYVTACIACSLLVYVFMKDTRKHSRIETD gamma_subgroup Pseudomonas_syringae_pv._tomato_str._DC3000 Pseudomonas_syringae_pv._tomato_str._DC3000 NC_004578 4842839..4844164 Buell,C.R.,_Joardar,V.,_Lindeberg,M.,_Selengut,J.,_Paulsen,I.T.,_Gwinn,M.L.,_Dodson,R.J.,_Deboy,R.T.,_Durkin,A.S.,_Kolonay,J.F.,_Madupu,R.,_Daugherty,S.,_Brinkac,L.,_Beanan,M.J.,_Haft,D.H.,_Nelson,W.C.,_Davidsen,T.,_Zafar,N.,_Zhou,L.,_Liu,J.,_Yuan,Q.,_Khouri,H.,_Fedorova,N.,_Tran,B.,_Russell,D.,_Berry,K.,_Utterback,T.,_Van_Aken,S.E.,_Feldblyum,T.V.,_DAscenzo,M.,_Deng,W.L.,_Ramos,A.R.,_Alfano,J.R.,_Cartinhour,S.,_Chatterjee,A.K.,_Delaney,T.P.,_Lazarowitz,S.G.,_Martin,G.B.,_Schneider,D.J.,_Tang,X.,_Bender,C.L.,_White,O.,_Fraser,C.M._and_Collmer,A. NA 0:1326 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_AE016853.This_represents_the_most_recent_version_of_the_continually_updatedgenome_annotations_for_Pseudomonas_syringae_pv._tomato_strainDC3000_by_the_Pseudomonas-Plant_Interaction_project._Seehttp://www.pseudomonas-syringae.org_for_the_latest_updates_andexpanded_annotations._We_welcome_submission_throughwww.pseudomonas-syringae.org_of_any_proposed_changes._Note_thatlocus_tags_with_values_greater_than_PSPTO_5615_represent_featuresadded_subsequent_to_the_initial_annotation_(06-MAR-2003)_and_arenot_in_sequential_order_relative_to_other_locus_tags.COMPLETENESS:_full_length. NA 07-DEC-2011 Pseudomonas_syringae_pv._tomato_str._DC3000_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_syringae_Q87X92_PSESM.gb RNA_similarity_group_I 28867243 Proc._Natl._Acad._Sci._U.S.A._100_(18),_10181-10186_(2003) NA NC_004578 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 12928499 1326 NA genomic_DNA NA DC3000 NA Pseudomonas_syringae_group_genomosp._3 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 223283 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas The_complete_genome_sequence_of_the_Arabidopsis_and_tomato_pathogen_Pseudomonas_syringae_pv._tomato_DC3000 NA NC_004578.1 ATGGAAACCTCCAACCCCGCCTCCAACGGGCCGGCAGCCAGCATCGCCGGTCAGAAAACCACCTCCAGCCGTCTCAAGTCCATTTTCAGTGGCTCGGTCGGCAATATGGTCGAGTGGTACGACTGGTACGTCTACGCAGCTTTCTCGCTGTACTTCGCCAAAGCGTTCTTCCCCAAGGGCGACACCACCGCCCAATTGCTCAACACCGCCGCGATCTTCGCCGTCGGCTTTCTGATGCGACCTATCGGTGGCTGGCTGATGGGGCTGTACGCTGACTACAAAGGACGCAAGGCCGCGCTGATGGCGTCGGTGCTGCTGATGTGTTTCGGCTCGCTGATCATCGCCCTGACCCCGGGCTACGAAAGCATTGGCGTCGGTGCTCCGATCCTGCTGGTATTCGCCAGATTGCTGCAAGGCCTGTCGGTCGGCGGCGAGTACGGTACTTCGGCCACCTACCTCAGTGAGATGGCGACCAAAGAGCGTCGCGGCTTCTTTTCCAGCTTCCAGTACGTCACGCTGATTTCCGGTCAGCTCATCGCGCTGGCCGTATTGATTGTGTTGCAACAGACCCTGACCACCGAGCAGCTGTATGCCTGGGGCTGGCGCATCCCGTTCGTCATCGGTGCCCTGTGCGCGGTAGTGGCGCTGTTTCTGCGTCGCGGCATGGAAGAAACCGAGTCGTTCACCCGCAAGAAAAAGGAAAAACGCAAGGAAAGCCTGATGCGCACGTTGATACGCCATCCCAAGGAACTGATGACCGTGGTCGGCCTGACCATGGGCGGTACGCTGGCGTTCTACACCTACACCACGTACATGCAGAAGTACCTGGTCAACACCGTCGGCATGAGCATCACCGACTCGACCTCGATATCGGCCGCTACGCTGTTTCTGTTCATGTTGTTGCAGCCCGTGGTCGGGGCGCTGTCCGACAAGATCGGGCGACGTCCGATCCTGATTGCATTTGGCGTACTGGGCACGCTGTGCACGGTGCCGATCCTGACCACCTTGCACACCATTCAAACCTGGTGGGGCGCGTTCTTCCTGATCATGGCAGCGCTGATCATCGTCAGTGGCTACACCTCGATCAACGCAGTGGTCAAAGCCGAACTGTTTCCGACCGAGATCCGCGCACTGGGCGTCGGCCTGCCGTATGCCCTGACCGTGTCGATCTTCGGTGGCACAGCGGAATACATCGCACTGTGGTTCAAGAGCATCGGTATGGAGACGGGCTATTACTGGTACGTCACCGCCTGCATCGCCTGTTCGTTGCTGGTGTACGTCTTCATGAAAGACACCCGCAAACACTCGCGTATCGAAACTGACTGA > 931 PSPTO_3336 similar_to_SP:P16482;_identified_by_sequence_similarity citrate_transporter NP_793119.1 11 MNGSSPHKAASARSRAGAVFRVTSGNFLEQFDFFLFGFYATQIASAFFPATSEFASLMMTFAVFGAGFLMRPLGAVILGAYIDDVGRRKGLIVTLSIMASGTLLIVLVPGYATIGLWAPALVLLGRLLQGFSAGAELGGVSVYLAEMATPGRKGFYTSWQSGSQQVAIIVAAALGYALNQWMAPAAVADWGWRIPFAIGCLIIPFIFLLRRSLQETEEFATRLHRPSMREVFATLLQNWRVVIAGMLMVAMTTTTFYLITIYAPTFGKTVLNLSTADALLVTLLVGVSNFIWLPIGGMLSDRFGRKPLLVAMTLLTILSAYPALSFLAQAPSFSHMLEVLLWFSCLYGLYNGAMIPALTEIMPVEVRVAGFSLAYSLATAIFGGFTPAISTWLIHLTGDKAAPAYWMTFAAVCALGATLVLYRHISARPQLAV gamma_subgroup Pseudomonas_syringae_pv._tomato_str._DC3000 Pseudomonas_syringae_pv._tomato_str._DC3000 NC_004578 3773567..3774868 Buell,C.R.,_Joardar,V.,_Lindeberg,M.,_Selengut,J.,_Paulsen,I.T.,_Gwinn,M.L.,_Dodson,R.J.,_Deboy,R.T.,_Durkin,A.S.,_Kolonay,J.F.,_Madupu,R.,_Daugherty,S.,_Brinkac,L.,_Beanan,M.J.,_Haft,D.H.,_Nelson,W.C.,_Davidsen,T.,_Zafar,N.,_Zhou,L.,_Liu,J.,_Yuan,Q.,_Khouri,H.,_Fedorova,N.,_Tran,B.,_Russell,D.,_Berry,K.,_Utterback,T.,_Van_Aken,S.E.,_Feldblyum,T.V.,_DAscenzo,M.,_Deng,W.L.,_Ramos,A.R.,_Alfano,J.R.,_Cartinhour,S.,_Chatterjee,A.K.,_Delaney,T.P.,_Lazarowitz,S.G.,_Martin,G.B.,_Schneider,D.J.,_Tang,X.,_Bender,C.L.,_White,O.,_Fraser,C.M._and_Collmer,A. NA 0:1302 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_AE016853.This_represents_the_most_recent_version_of_the_continually_updatedgenome_annotations_for_Pseudomonas_syringae_pv._tomato_strainDC3000_by_the_Pseudomonas-Plant_Interaction_project._Seehttp://www.pseudomonas-syringae.org_for_the_latest_updates_andexpanded_annotations._We_welcome_submission_throughwww.pseudomonas-syringae.org_of_any_proposed_changes._Note_thatlocus_tags_with_values_greater_than_PSPTO_5615_represent_featuresadded_subsequent_to_the_initial_annotation_(06-MAR-2003)_and_arenot_in_sequential_order_relative_to_other_locus_tags.COMPLETENESS:_full_length. NA 07-DEC-2011 Pseudomonas_syringae_pv._tomato_str._DC3000_chromosome,_complete_genome. NA Pseudomonadaceae_Winslow_et_al._1917 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudomonas_syringae_Q87ZT8_PSESM.gb RNA_similarity_group_I 28867243 Proc._Natl._Acad._Sci._U.S.A._100_(18),_10181-10186_(2003) NA NC_004578 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 12928499 1302 NA genomic_DNA NA DC3000 NA Pseudomonas_syringae_group_genomosp._3 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 223283 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Pseudomonadales,_Pseudomonadaceae,_Pseudomonas The_complete_genome_sequence_of_the_Arabidopsis_and_tomato_pathogen_Pseudomonas_syringae_pv._tomato_DC3000 NA NC_004578.1 TTACACGGCCAATTGCGGGCGAGCTGAAATGTGCCGATACAGCACCAGTGTCGCGCCCAGGGCGCACACCGCAGCAAAAGTCATCCAGTAAGCAGGCGCAGCCTTGTCGCCGGTCAGGTGGATCAGCCATGTGGATATGGCCGGAGTGAAGCCACCGAAAATTGCGGTCGCCAGGCTGTAGGCCAGGGAAAAACCGGCAACGCGAACCTCCACCGGCATGATTTCAGTCAGCGCAGGGATCATCGCGCCGTTGTACAAGCCGTAGAGGCACGAGAACCACAGCAACACTTCAAGCATGTGGCTGAAGCTGGGCGCCTGAGCGAGAAACGACAGCGCCGGATAAGCACTGAGAATGGTCAGCAAGGTCATTGCCACCAGCAGCGGCTTGCGCCCGAAACGGTCGCTCAGCATGCCGCCGATGGGCAGCCAGATAAAATTGGACACGCCGACCAGCAAGGTCACCAGCAGAGCATCGGCGGTACTCAGGTTCAGCACGGTTTTGCCAAAGGTCGGCGCATAGATGGTGATCAGGTAAAACGTGGTAGTCGTCATCGCAACCATCAGCATCCCGGCGATGACCACACGCCAGTTCTGCAACAGGGTCGCGAAGACCTCCCGCATGCTCGGGCGGTGTAAGCGGGTGGCGAACTCTTCGGTTTCCTGAAGGCTGCGACGCAGCAGGAAAATGAACGGGATGATCAGGCAACCGATGGCGAATGGAATTCTCCAGCCCCAGTCAGCCACCGCCGCAGGGGCCATCCACTGGTTGAGGGCGTAACCCAGCGCAGCCGCGACAATGATCGCCACCTGCTGACTGCCGGATTGCCAACTGGTATAGAAGCCTTTGCGACCCGGCGTGGCCATTTCGGCCAGATACACCGACACCCCGCCCAGCTCGGCTCCGGCAGAGAACCCCTGCAGCAGGCGCCCCAGCAAGACCAGTGCAGGTGCCCAGAGCCCGATAGTCGCGTAGCCGGGCACCAGCACAATGAGCAGCGTGCCACTGGCCATGATCGACAGGGTCACGATCAAGCCTTTGCGGCGGCCGACGTCGTCTATATAAGCGCCAAGAATCACCGCCCCCAAGGGACGCATCAGGAAACCCGCGCCAAAGACCGCAAAGGTCATCATCAACGAGGCGAACTCGCTGGTCGCGGGAAAGAAGGCCGAGGCGATTTGAGTGGCGTAGAAGCCGAACAGGAAGAAATCGAATTGTTCGAGGAAATTGCCTGACGTGACGCGAAACACTGCTCCGGCCCGAGACCGGGCGGACGCAGCTTTATGAGGGGATGAGCCATTCAT > 932 Psesu_1048 TIGRFAM:_sugar_transporter;_KEGG:_ttu:TERTU_0386_MFS_transporter_SP_family sugar_transporter YP_004146129.1 11 MAGIGNTTTGTTNIEAGGENTRFIILISLVATIGGFLFGYDSGVINGTVDGLTAAFKSDAAVTGFNVASMLLGCAVGAWFAGTLADRYGRRTMLLWAAVFFIVSAWGSGIATSSAEFVVYRVIGGFAVGAASVMSPAYIAEVAPAHYRGRLATVQQIAIISGLFFSFLSNWWLAGHAGASTAVLWMEHEAWRWMFWAELVPAFLFLVALFFIPESPRYLVARGLKEKAGKVLARLYGEQGGARKLAEIDASLATDHHRPRLSDLISKATGKVRPIVWVGIGLATFQQLVGINVVFYYGAVLWQAVGFSENDALLINVLSGALSIGACLVTIVLVDKVGRKPLLWVGSAGMAVTLGIVAWAFSTGTLDAAGKLQLPGQMGLVALVAANAYVVFFNASWGPVMWVMLGEMFPNQIRGSGLAVAGLAQWVANFVITWTFPMLLAGIGLAAAYGLYAAAAVLSVFFVLRFVRETRGRELEQMEG gamma_subgroup Pseudoxanthomonas_suwonensis_11-1 Pseudoxanthomonas_suwonensis_11-1 NC_014924 1190361..1191803 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Goodwin,L.,_Pitluck,S.,_Teshima,H.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ivanova,N.,_Ovchinnikova,G.,_Siebers,A.K.,_Allgaier,M.,_Thelen,M.P.,_Hugenholtz,P.,_Gladden,J._and_Woyke,T. NA 0:1443 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002446.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4090073Source_DNA_and_organism_available_from_John_Gladden(JMGladden@lbl.gov)Contacts:_John_Gladden_(JMGladden@lbl.gov)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Pseudoxanthomonas_suwonensis_strain_11-1collection_date_::_Missinglat_lon_::_37.8406_-122.2896depth_::_Missingalt_elev_::_4mcountry_::_USAenvironment_::_Missingnum_replicons_::_1ref_biomaterial_::_Missingbiotic_relationship_::_Free_livingtrophic_level_::_Missingrel_to_oxygen_::_Aerobeisol_growth_condt_::_Missingsequencing_meth_::_WGSassembly_::_Newbler_v._2.3_(pre-release)finishing_strategy_::_FinishedGOLD_Stamp_ID_::_Gi07651type_Strain_::_NoFunding_Program_::_DOE-JBEI_2008Isolation_Site_::_BioreactorSource_of_Isolate_::_Compost-feedstock_enrichment_culture##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_FinishedAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_30xSequencing_Technology_::_454-Titanium,_Illumina,_454-Paired-end##Genome-Assembly-Data-END##COMPLETENESS:_full_length. NA 31-AUG-2011 Pseudoxanthomonas_suwonensis_11-1_chromosome,_complete_genome. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pseudoxanthomonas_suwonensis_E6WRU9_PSEUU.gb Pseudoxanthomonas_Finkmann_et_al._2000_emend._Thierry_et_al._2004 319785620 Unpublished NA NC_014924 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives NA 1443 NA genomic_DNA NA 11-1 NA Pseudoxanthomonas_suwonensis_Weon_et_al._2006 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 743721 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Pseudoxanthomonas Complete_sequence_of_Pseudoxanthomonas_suwonensis_11-1 NA NC_014924.1 ATGGCGGGCATTGGCAACACCACGACCGGCACGACGAACATCGAAGCCGGCGGCGAGAACACGCGTTTCATCATCCTGATCAGCCTGGTGGCCACCATCGGTGGCTTCCTGTTCGGCTACGACAGCGGCGTGATCAACGGCACGGTCGACGGCCTGACCGCGGCGTTCAAGTCCGACGCGGCGGTGACCGGCTTCAACGTCGCCTCGATGCTGCTGGGCTGCGCGGTCGGCGCCTGGTTCGCCGGCACCCTGGCCGACCGCTACGGCCGGCGCACCATGCTGCTGTGGGCGGCGGTGTTCTTCATCGTTTCGGCGTGGGGTTCGGGCATCGCCACCTCCTCGGCCGAATTCGTGGTCTACCGCGTGATCGGCGGCTTTGCCGTCGGCGCGGCCAGCGTGATGTCGCCGGCCTACATCGCCGAGGTGGCCCCGGCGCACTACCGCGGCCGGCTGGCCACGGTGCAGCAGATCGCGATCATCTCCGGCCTGTTCTTCTCGTTCCTGAGCAACTGGTGGCTGGCCGGCCATGCCGGTGCCTCCACCGCGGTGCTGTGGATGGAGCACGAGGCCTGGCGCTGGATGTTCTGGGCAGAGCTCGTGCCGGCGTTCCTGTTCCTGGTGGCGCTGTTCTTCATTCCCGAGAGCCCGCGCTACCTGGTGGCCCGCGGCCTGAAGGAGAAGGCAGGCAAGGTGCTGGCGCGGCTGTACGGCGAGCAGGGCGGGGCGCGCAAGCTGGCGGAGATCGACGCCTCGCTGGCGACCGACCACCACCGTCCGCGCCTGTCGGACCTGATCAGCAAGGCCACCGGCAAGGTGCGGCCGATCGTGTGGGTGGGCATTGGCCTGGCCACGTTCCAGCAGCTGGTCGGCATCAACGTGGTGTTCTACTACGGCGCGGTGCTGTGGCAGGCGGTGGGCTTCTCGGAGAACGACGCGCTGCTGATCAACGTGCTGTCCGGCGCGCTGAGCATCGGTGCCTGCCTGGTGACGATCGTGCTGGTGGACAAGGTCGGTCGCAAGCCGCTGCTGTGGGTCGGCTCGGCGGGCATGGCGGTGACCCTGGGCATCGTGGCCTGGGCGTTCTCCACCGGCACCCTGGACGCGGCCGGCAAGCTGCAGCTGCCGGGGCAGATGGGCCTGGTGGCGCTGGTGGCGGCCAACGCCTACGTGGTGTTCTTCAACGCCTCGTGGGGCCCGGTGATGTGGGTGATGCTGGGCGAGATGTTCCCCAACCAGATCCGCGGCTCGGGCCTGGCGGTGGCGGGCCTGGCGCAGTGGGTGGCGAACTTCGTCATCACCTGGACCTTCCCGATGCTGCTGGCCGGCATCGGCCTGGCGGCGGCCTACGGCCTGTACGCGGCGGCGGCGGTGCTGTCGGTGTTCTTCGTGCTGCGCTTCGTCCGCGAAACCCGCGGGCGCGAGCTGGAGCAGATGGAAGGATGA > 933 PGTG_05495 NA hypothetical_protein EFP79174.1 NA MAELATKGEKQYSLSGDLHTTDPSEPAVKPAPPIFDPELQRIAELSAKLENPLSGFSSHELVQQAEEFCQANGLNDQLENFKRGAILAANPQDLDRIPGITEEERQFIDWEGSRRWKQPMMMYFIAILSSMAAIVQGMDEAVVNGAQIFYYDRFGIPTDGTKKTAIIQGLVNSAPYLCCAVFACWITDPANRLLGRRGVIFWSCFIAGAASIWEAFTYSWPQLFVSRLALGLGIGPKSATGPIYTAECAPAPIRGALVMQWQMAFGIALGDVVSVIFVDVEPNVAWRLSRIPSQYFGKIILDGRDRLMLGSTVVAPVIVCCMIYYAPESPRWYMSKGRVADAYHSMRRLRFCDLQASRDLFYIAKLLELENESLQGRNLLTDMWRVPRVRRAAQASGLVMFMQQFCGVNVIAYYSSQVFIEAGFDRKAALLTTMGTGLVNWIFAIPALYTIDTFGRRNLLLTTFPAMAACLLATGMAFFIPFDGPGDNRRVGVVAASIYLYMAFYSPGEGPVPFTYSAEAFPLYIRDFGMSYATAVCWFFNFVLAITFPLMLTAFKPQGAFGWYAGWCIIGWVAVFFTLPETKALTLEELDYVFSVPTAKHASYQVKNFMWCFRKYVLRQQVKPLPPLYQLNLSVKN NA Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3 Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3 DS178272 429814..429844 Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Mauceli,E.,_Brockman,W.,_Young,S.,_LaButti,K.,_Sykes,S.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_White,J.,_Zeng,Q.,_Kodira,C.,_Yandava,C.,_Alvarado,L.,_OLeary,S.,_Szabo,L.,_Dean,R._and_Schein,J. NA 0:>31 NA NA 19-OCT-2010 Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_supercont2.11_genomic_scaffold,_whole_genome_shotgun_sequence. NA Pucciniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Puccinia_graminis_E3K4I8_PUCGT.gb Puccinia 124000909 Unpublished fungi DS178272 hypothetical_protein NA rusts basidiomycetes NA 31 NA genomic_DNA NA CRL_75-36-700-3 NA Puccinia_graminis NA complement Urediniomycetidae NA NA Dikarya NA Urediniomycetes NA NA NA NA eukaryotes NA 418459 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Pucciniomycotina,_Pucciniomycetes,_Pucciniales,_Pucciniaceae,_Puccinia The_Genome_Sequence_of_Puccinia_graminis_f._sp._tritici_Strain_CRL_75-36-700-3 NA DS178272.1 TCAATTCTTTACACTCAAGTTGAGTTGATAT > 934 PGTG_07900 NA carboxylic_acid_transporter EFP81651.1 NA MSFIQNTFRGLPRLPNKQERAANRPRPPWQICRELSARHYMYFCVGFLAWVIDAFDFFAVSVTLTRLSVQFDGRSITDLTESITLTLLFRSVGALGFGLLTDRFGRRWPLTANLVCIALLALGTAFVQTFQAFLAVRAFFGIMMGGIYGMATATALENMPSEARGLFSGILQQGYAIGYLIAASLNLSLVAKTDDWRSIFYFGACLSFLIAILRALCPESPVFLEARKQAQINAGDSSGRSAGKVYLDSLTAAVKQYWGRFVFAILLMTGFNFLSHGSQGNCGAITGGILGGWSSQFLGRRLAIIAMCIWTGAFIPLWILPTSFSGLALGAFFLQFGVQGAWGVVPIYLSEIAPPACLAIFTGLTYQLGNMISAASTQIEARAGELHRVVINGTEVEDYTVVQAALIGTVAGYIIIMTCFGKEYRGVDLVTGAPTSEDTTPTVTDEETLAKIEKEKP NA Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3 Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3 DS178279 697405..697673 Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Mauceli,E.,_Brockman,W.,_Young,S.,_LaButti,K.,_Sykes,S.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_White,J.,_Zeng,Q.,_Kodira,C.,_Yandava,C.,_Alvarado,L.,_OLeary,S.,_Szabo,L.,_Dean,R._and_Schein,J. NA 0:>269 NA NA 19-OCT-2010 Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_supercont2.18_genomic_scaffold,_whole_genome_shotgun_sequence. NA Pucciniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Puccinia_graminis_E3KBD8_PUCGT.gb Puccinia 124000902 Unpublished fungi DS178279 carboxylic_acid_transporter NA rusts basidiomycetes NA 269 NA genomic_DNA NA CRL_75-36-700-3 NA Puccinia_graminis NA complement Urediniomycetidae NA NA Dikarya NA Urediniomycetes NA NA NA NA eukaryotes NA 418459 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Pucciniomycotina,_Pucciniomycetes,_Pucciniales,_Pucciniaceae,_Puccinia The_Genome_Sequence_of_Puccinia_graminis_f._sp._tritici_Strain_CRL_75-36-700-3 NA DS178279.1 TCAAGGTTTCTCTTTTTCGATCTTTGCCAAAGTTTCTTCGTCGGTGACAGTGGGAGTAGTATCCTCGGAAGTTGGTGCACCAGTGACCAAATCGACCCCTCGGTATTCCTTCCCAAAGCATGTCATGATGATAATATACCCCGCCACGGTCCCGATCAAAGCGGCTTGGACTACCGTGTAATCCTCGACTTCAGTCCCGTTTATGACCACGCGGTGAAGCTCACCTGCCCTGGCTTCTATTTGAGTAGATGCGGCACTGATCATGTTTC > 935 PGTG_15147 NA high-affinity_glucose_transporter_RGT2 EFP88944.1 NA MTKKFDDRVIPLGEPATTRAKLVGVAMALFAAFGGFLYGYDTGYISGTKEMAYWKSLFGDQIADGSYILTTANDSLVTSILSAGTFTGALLAYPFGDRLGRRWGVIVACLIFCIGVALQTASTDIPVFAVGRVFAGLGVGMTSCLVPMYQSECAPKWIRGAVVACYQWAITIGLLVAAIVVNATQDINNASSYRIPIGIQFVWAVILSLGLYILPESPKYLILKGREEEAKKSLSRLLSIPATSPQVLSEYDEVCESLRAERAMGTSTYADCFKSGPGKYRLRTLTGMGIQALQQLTGINFIFYYGTTFFKNSGIKEAFTITIITNVVNVVMTIPGIWLVDKAGRRSLLLTGAAIMCVCEFIVAIIGLKLESSNLAGQRALISLVCIYIGAFAATWGPIAWVVTSEIYPLAIRAKAINFAIGYSTPYLVDVGPGKAGLQSNVFFIWGACCGLCFLFTFFCIPETKGLSLEQVDQLYMNSSILGSNAYRRRLVNGEFDTHQPTTPLGSIVEDDRADKLAKVA NA Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3 Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3 DS178318 161898..162084 Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Mauceli,E.,_Brockman,W.,_Young,S.,_LaButti,K.,_Sykes,S.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_White,J.,_Zeng,Q.,_Kodira,C.,_Yandava,C.,_Alvarado,L.,_OLeary,S.,_Szabo,L.,_Dean,R._and_Schein,J. NA 0:>187 NA NA 19-OCT-2010 Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_supercont2.57_genomic_scaffold,_whole_genome_shotgun_sequence. NA Pucciniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Puccinia_graminis_E3KXI6_PUCGT.gb Puccinia 124000863 Unpublished fungi DS178318 high-affinity_glucose_transporter_RGT2 NA rusts basidiomycetes NA 187 NA genomic_DNA NA CRL_75-36-700-3 NA Puccinia_graminis NA complement Urediniomycetidae NA NA Dikarya NA Urediniomycetes NA NA NA NA eukaryotes NA 418459 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Pucciniomycotina,_Pucciniomycetes,_Pucciniales,_Pucciniaceae,_Puccinia The_Genome_Sequence_of_Puccinia_graminis_f._sp._tritici_Strain_CRL_75-36-700-3 NA DS178318.1 TCAAGCGACTTTAGCGAGCTTGTCGGCCCGGTCGTCTTCGACGATCGAGCCGAGCGGGGTCGTAGGCTGATGGGTGTCGAACTCGCCATTGACGAGTCGCCGACGATAGGCATTGGAGCCGAGGATGGAGCTGTTCATGTAGAGTTGATCGACCTGCTCGAGCGACAGCCCCTTGGTCTCCGGAATA > 936 SAR116_1154 NA major_facilitator_superfamily_protein YP_003551481.1 11 MVNLTHNHKNVLRLTCAQALSMTTMNVNMINTALVGSILAPVAWLSTLPLSLMFVMSMLSTLPVSLLMSRYGRRPLFMLGVCVAVLSTLSQAVAIVLHHYIFFCVASMGLGFSLACAGFYRYAAADSAAPEDKPRAISWVLTGGLVAAFLGPEIARNTVDLVPDALYAGCFFTASLVQLVSLLFIFGVKIPKPEQRLYAGRPISIFLRMPIFLIGMFCAALGYALMSYLMTATPLQVVNVSQLGTSANASIIQWHVVAMFAPSFFTGNLIARYGVSRILGSGVLAYVAVIILALMGDDFWHYFGALFLLGIGWNFLYIGGSSLVAQVANPEERGRVQGVADLTMTILVASASLIAGVVHSQLGWEVMVLAASLPVFLLMCSVVWLVSHRYQNTQA alpha_subgroup Candidatus_Puniceispirillum_marinum_IMCC1322 Candidatus_Puniceispirillum_marinum_IMCC1322 NC_014010 1231420..1232607 Oh,H.M.,_Kwon,K.K.,_Kang,I.,_Kang,S.G.,_Lee,J.H.,_Kim,S.J._and_Cho,J.C. NA 0:1188 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001751.Source_DNA_of_IMCC1322_is_available_from_Dr._Jang-Cheon_Cho(chojc@inha.ac.kr)_or_IMCC_(Inha_Microbe_Culture_Collection,_InhaUniversity,_Incheon_402-751,_Republic_of_Korea).COMPLETENESS:_full_length. NA 28-OCT-2011 Candidatus_Puniceispirillum_marinum_IMCC1322_chromosome,_complete_genome. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Puniceispirillum_marinum_D5BT00_PUNMI.gb Puniceispirillum 294083570 J._Bacteriol._192_(12),_3240-3241_(2010) NA NC_014010 NA NA NA purple_photosynthetic_bacteria_and_relatives 20382761 1188 NA genomic_DNA NA IMCC1322 NA Puniceispirillum_marinum NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 488538 Bacteria,_Proteobacteria,_Alphaproteobacteria,_SAR116_cluster,_Candidatus_Puniceispirillum Complete_genome_sequence_of_Candidatus_Puniceispirillum_marinum_IMCC1322,_a_representative_of_the_SAR116_clade_in_the_Alphaproteobacteria NA NC_014010.1 CTACGCCTGTGTGTTTTGATATCTATGGCTAACCAGCCATACAACTGAACACATAAGCAAGAAAACTGGCAAAGATGCGGCCAGAACCATCACTTCCCAGCCCAATTGACTATGCACCACACCAGCGATAAGCGAGGCTGAAGCAACAAGAATTGTCATTGTGAGGTCAGCAACACCCTGGACACGCCCACGCTCTTCCGGATTGGCAACCTGTGCCACCAAAGAACTGCCACCGATATATAAGAAATTCCAGCCTATACCCAGTAAAAATAAGGCCCCAAAATAATGCCAGAAATCATCTCCCATCAGAGCCAGTATGATCACAGCAACATAGGCCAAAACACCAGATCCCAGAATTCGGCTGACACCATAACGGGCAATGAGGTTGCCGGTAAAAAATGAGGGCGCAAACATCGCTACAACATGCCATTGAATAATCGACGCATTAGCCGACGTGCCAAGCTGGCTTACATTGACCACCTGTAATGGCGTTGCTGTCATCAGATAGCTCATCAGGGCATAACCAAGTGCCGCACAGAACATGCCAATCAGAAATATCGGCATCCGCAAAAAGATACTAATTGGGCGCCCTGCATATAACCGTTGTTCAGGCTTGGGAATCTTAACACCAAAAATGAAAAGAAGGGACACAAGCTGAACAAGCGAGGCGGTAAAGAAACAACCTGCATATAGTGCGTCAGGCACCAAATCGACTGTATTGCGGGCAATTTCAGGCCCTAAAAAAGCCGCAACCAACCCCCCAGTCAGCACCCATGATATGGCTCGTGGTTTATCTTCAGGCGCGGCACTATCCGCAGCGGCATAACGATAGAACCCCGCACAAGCCAATGAAAATCCAAGCCCCATCGATGCCACGCAGAAGAATATATAGTGATGCAAAACAATAGCCACGGCTTGCGATAAGGTCGATAGAACCGCCACACAAACGCCCAACATAAATAGCGGGCGTCGGCCATATCGTGACATCAGCAAAGAAACCGGCAATGTTGACAACATCGACATTACAAACATCAAAGATAATGGCAAAGTTGACAGCCATGCAACAGGCGCCAATATGCTACCGACCAATGCTGTATTGATCATATTCACATTCATGGTTGTCATTGAGAGTGCCTGCGCACAAGTCAGTCTGAGTACATTCTTGTGATTATGCGTCAGATTTACCAT > 937 PTT_07297 NA hypothetical_protein EFQ94875.1 NA MPELRGRALMLTISVLTSLGFMLIGYDNGLMGGLVGAPAFNKTFDYPSSDMIGTIVAIFEIGCFFGAMGTAVVGEKLGRRKSVAIGAVISILGAILQATAYGRAHLIVGRIVSGVGLGIINSTVPVMQAEFSPKATRGIYVCAQLSTLNFGIFLVYWIDYAFVSHTSDYAWRIPTILQCIILLAILGLLTLIPETPRWLAAHDRPDECLRVLARVADVPETDYEVQRLHTIITETVAFEQSRQAGWKDIVRSDPIKSRRRFMIACGIQMFQQLGGINAIIYYSGTLFQKSIGFDTHMSALMSGFLQTWFFVASFIPWFLIDRVGRRPLLLSMISVMAVVMAVQSGLIYQVQNKTASAKGAGIAAAAMLFVFQGAFTIGFQATVWVYPSEILPLRLRQRGSAISTAANWICNYIIVQITPRAISNIGWKTYIIFAVLNGLWVPIIFFFFPETKGLELEDVDRLFSGEASRADLLDKESDAERVENVVDAKIVENAKHVS bitunicate_ascomycetes Pyrenophora_teres_f._teres_0-1 Pyrenophora_teres_f._teres_0-1 GL533075 17574..18229 Ellwood,S.R.,_Liu,Z.,_Syme,R.A.,_Lai,Z.,_Hane,J.K.,_Keiper,F.,_Moffat,C.S.,_Oliver,R.P._and_Friesen,T.L. NA 0:>656 ##Genome-Assembly-Data-START##Assembly_Method_::_Abyss_v._1.0.14Assembly_Name_::_PyrTer_1.0Genome_Coverage_::_20xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 07-DEC-2010 Pyrenophora_teres_f._teres_0-1_unplaced_genomic_scaffold_scaffold_189306,_whole_genome_shotgun_sequence. NA Pyrenophoraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pyrenophora_teres_E3RHC4_PYRTT.gb Pyrenophora 311330513 Genome_Biol._11_(11),_R109_(2010) fungi GL533075 hypothetical_protein NA Pleosporales sac_fungi 21067574 656 Unknown genomic_DNA 861557 0-1 NA barley_net-spot_blotch_disease_agent NA complement Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 861557 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Pleosporaceae,_Pyrenophora A_first_genome_assembly_of_the_barley_fungal_pathogen_Pyrenophora_teres_f._teres NA GL533075.1 TCACGATACATGCTTAGCGTTCTCTACGATTTTTGCATCTACAACATTCTCCACTCGCTCCGCATCACTTTCCTTGTCCAGTAAATCGGCTCGGCTCGCTTCGCCAGAGAAAAGGCGATCAACGTCTTCCAGCTCAAGTCCTTTGGTCTCGGGGAAGAAGAAGAATATAATCGGCACCCAAAGACCATTGAGCACGGCGAAAATGATGTATGTCTTCCATCCGATATTGCTGATCGCACGAGGTGTAATTTGCACGATTATGTAGTTGCATATCCAGTTCGCTGCCGTCGAGATCGCCGATCCGCGCTGTCGCAGGCGGAGCGGCAGAATTTCAGAAGGATACACCCACACAGTAGCCTGGAAACCGATCGTGAAGGCGCCCTGGAAGACGAAGAGCATAGCGGCTGCCGCGATACCTGCGCCCTTCGCCGAAGCGGTTTTGTTCTGTACCTGGTAGATGAGCCCAGATTGTACTGCCATGACAACAGCCATGACACTTATCATAGAGAGGAGCAGTGGTCGTCTGCCGACCCGGTCGATGAGGAACCATGGAATGAATGAGGCGACAAAGAACCAGGTCTGCAGAAAGCCACTCATCAGGGCGGACATGTGAGTATCGAAGCCGATGCTCTTCTGGAAGAGGGTTCCGGAATAAT > 938 PTT_07986 NA hypothetical_protein EFQ94346.1 NA MTPLVPKTQDDFVHDNDEKQPRQSHPDAITSSSISKTISSSLPSASKCESATPIFHRSVSVAEATINAEHSMTLRQGVRQFPKAIAWSVVISMTLVMEGYSTILVPNLFAMDPFRRQFGDKLPNGTYEISANWQSALVNGGLAGQILGLFATGTVAERIGYRHTLMLGLMAMNVFIFVTFFAASKEVLLAGQCLLGMPWGMFQCICTVYAADVCPVSLRAYLTTWVNACWVLGQLIASIVMRGMISDTTDWSYRIPFALQWIFPLPIFLAVCFAPESPWWLIRQNRFADAKASLQRLRTKPKSVSDAEFDLVLVGTMEGMMETNDREQRMQTGTSYKDCFKGVDRRRTEITCMVWIIQTLCGSTFMGFSTYFYEQAGIPPSHAFTLSLAQFALGLIGVIISWALMSHFGRRTLYLSGQTLTCLFVLLIGILACIPQPNTNSAKGTSTPLNWAIAALLLAFTLAYDATLGPICYALVSEMPSTRLRSKTIVLARNCYNVGGIVTNVITPRMLNPTAWGWGAKAGFFWAGTSVLGLVWSLCRLPEPKGRTFGELDELFERGVPARGFKG bitunicate_ascomycetes Pyrenophora_teres_f._teres_0-1 Pyrenophora_teres_f._teres_0-1 GL533365 9..591 Ellwood,S.R.,_Liu,Z.,_Syme,R.A.,_Lai,Z.,_Hane,J.K.,_Keiper,F.,_Moffat,C.S.,_Oliver,R.P._and_Friesen,T.L. NA <0:>583 ##Genome-Assembly-Data-START##Assembly_Method_::_Abyss_v._1.0.14Assembly_Name_::_PyrTer_1.0Genome_Coverage_::_20xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 07-DEC-2010 Pyrenophora_teres_f._teres_0-1_unplaced_genomic_scaffold_scaffold_189601,_whole_genome_shotgun_sequence. NA Pyrenophoraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pyrenophora_teres_E3RIU1_PYRTT.gb Pyrenophora 311329704 Genome_Biol._11_(11),_R109_(2010) fungi GL533365 hypothetical_protein NA Pleosporales sac_fungi 21067574 583 Unknown genomic_DNA 861557 0-1 NA barley_net-spot_blotch_disease_agent NA complement Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 861557 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Pleosporaceae,_Pyrenophora A_first_genome_assembly_of_the_barley_fungal_pathogen_Pyrenophora_teres_f._teres NA GL533365.1 CCCTTGAACCCCCTCGCCGGCACCCCCCTCTCAAACAACTCATCCAACTCCCCAAACGTCCTCCCCTTTGGCTCCGGCAACCGGCACAAACTCCACACCAACCCCAGCACACTCGTGCCCGCCCAAAAGAACCCAGCTTTAGCGCCCCACCCCCAAGCCGTTGGGTTCAACATCCGCGGCGTAATCACATTCGTCACGATACCGCCGACGTTGTAGCAGTTCCGGGCTAGCACAATCGTCTTGCTGCGTAGTCGGGTGCTCGGCATCTCGGACACGAGGGCGTAGCAGATGGGGCCGAGGGTGGCGTCGTAGGCGAGTGTGAAGGCGAGGAGGAGGGCGGCGATGGCCCAGTTGAGTGGGGTGGATGTACCTTTTGCGCTGTTGGTGTTGGGCTGCGGGATACATGCTAGGATACCGATGAGCAGGACGAAGAGACATGTGAGGGTTTGACCGGAGAGGTAGAGTGTTCGACGGCCAAAGTGCGACATTAGTGCCCAAGAGATGATTACGCCGATGAGGCCGAGGGCGAATTGTGCGAGGGAGAGGGTGAACGCGTGCGAGGGGGGGATACCTGCTTGTTCGT > 939 PTT_11485 NA hypothetical_protein EFQ91631.1 NA MPPRIKESDSGVPTYWGQSGRMLQVLITIVAVTDFLLFGYDQGVMSGIISAPAFTEAFPEVESSSSYEGFVVSIYAVGCLLGACFIFVFGDKLGRRKSIFLGAIIMIVGVIIQVATVPPSGGATAQFIVGRCLTGIGNGINTSTIPTYQAECCKAKNRGKVICIEGSMVAIGTLIAYWIDYGCLYGPDDFTWRFPIAFQCVFAIIVIIMMISLPESPRWLLNHHHDEQAATVLAGLNGVPRDDPEVLIQMQIIRDAVNASGGGGKVPTKALLTNGKSQHLRRALLGASSQFMQQLSGCNAVIYYFPILCQEVLGTDHNLALLLGGINMVVYAIFACTSWFLIERVGRRKLYIIGTFGQMFSMILTFACLIPGTEGPAKGAAVGLFTYIAFFGATWLPLPWLYPAEINPLKTRQKANAFSTINNWLWNFFIVMITPVLIDNISWGTYLLFAALNACFIPVIYFFYPETSGRSLEEIDLIFAKGYTEKISYVTAAKQLPPMNEEEIAEAVRQYDLSDSDVENRSTAASMKEKRHQEEELMPQAGAQA bitunicate_ascomycetes Pyrenophora_teres_f._teres_0-1 Pyrenophora_teres_f._teres_0-1 GL534683 35081..36266 Ellwood,S.R.,_Liu,Z.,_Syme,R.A.,_Lai,Z.,_Hane,J.K.,_Keiper,F.,_Moffat,C.S.,_Oliver,R.P._and_Friesen,T.L. NA 0:>1186 ##Genome-Assembly-Data-START##Assembly_Method_::_Abyss_v._1.0.14Assembly_Name_::_PyrTer_1.0Genome_Coverage_::_20xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 07-DEC-2010 Pyrenophora_teres_f._teres_0-1_unplaced_genomic_scaffold_scaffold_190944,_whole_genome_shotgun_sequence. NA Pyrenophoraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pyrenophora_teres_E3RRN1_PYRTT.gb Pyrenophora 311325658 Genome_Biol._11_(11),_R109_(2010) fungi GL534683 hypothetical_protein NA Pleosporales sac_fungi 21067574 1186 Unknown genomic_DNA 861557 0-1 NA barley_net-spot_blotch_disease_agent NA complement Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 861557 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Pleosporaceae,_Pyrenophora A_first_genome_assembly_of_the_barley_fungal_pathogen_Pyrenophora_teres_f._teres NA GL534683.1 CTAAGCCTGAGCTCCTGCCTGAGGCATCAGCTCCTCTTCTTGGTGACGCTTCTCCTTCATTGATGCTGCTGTTGAACGGTTCTCAACATCGCTGTCGGAGAGGTCGTATTGTCGTACAGCTTCGGCGATCTCCTCCTCGTTCATGGGAGGCAGTTGCTTAGCAGCAGTAACGTAGCTAATCTTCTCAGTGTATCCCTTGGCGAAGATGAGGTCAATCTCTTCAAGCGAGCGACCAGACGTCTCGGGGTAGAAGAAGTAGATAACGGGAATGAAGCAAGCGTTGAGGGCGGCGAAAAGGAGGTAGGTACCCCAGCTGATGTTGTCGATGAGAACGGGAGTGATCATGACGATGAAGAAGTTCCACAGCCAGTTGTTGATGGTGGAGAACGCGTTAGCCTTCTGGCGGGTCTTGAGAGGGTTGATCTCAGCGGGGTACAGCCAGGGAAGAGGGAGCCAGGTAGCTCCGAAGAAGGCAATGTAGGTGAAGAGACCAACAGCGGCACCCTTTGCGGGTCCTTCGGTTCCAGGAATCAAGCAGGCGAAGGTTAGAATCATAGAGAACATCTGACCAAAAGTACCGATGATGTAGAGCTTGCGGCGACCAACACGCTCAATGAGGAACCAAGATGTGCAGGCAAAGATGGCGTAAACAACCATGTTGATACCACCCAAAAGAAGGGCGAGGTTGTGGTCGGTACCCAGGACTTCCTGGCAGAGAATAGGGAAGTAGTAAATGACAGCGTTGCAACCGGACAGTTGCTGCATGAACTGCGACGAAGCGCCGAGGAGAGCACGGCGAAGATGCTGAGACTTTCCGTTTGTCAAAAGAGCCTTTGTGGGGACCTTGCCACCACCACCTGAGGCGTTGACGGCGTCACGGATAATCTGCATCTGGATGAGGACCTCGGGGTCATCACGGGGAACTCCGTTCAAACCAGCCAGCACGGTAGCAGCTTGTTCGTCGTGGTGATGGTTGAGCAGCCAGCGAGGAGATTCAGGCAACGAGATCATCATGATAATGACGATGATGGCGAAAACACACTGGAAAGCGATGGGGAACCTCCAAGTGAAGTCGTCAGGGCCGTAGAGGCAGCCGTAGTCGATCCAGTAGGCGATAAGCGTACCAATAGCAACCATGGAACCTTCGATGCAAATGACTTTACCGCGGTTCTTGGCCTTGCAGCAC > 940 PTT_12013 NA hypothetical_protein EFQ91219.1 NA MGFTDKFTPKMGAVAKSRADVEAAQAEAPHLKKVNWKSDPGLRKLYFYAFFICIASATTGYDGSMLNNLRILPIWTAYFNDPKEGTLGLLTALYSIGSIASLPVAPFIADRFGRRSCITAGCVIMIVAAAIQGAAKNLDYFMGGRFLMGFGNSLAQLSSPLLLTELCHPQHRARVTAVYNCLWNVGAIICTWLTFGTKRIDNEWCWRIPALSQAAPSIIQLAAIWFIPESPRWLIAKDRNDEALHILAKYHANGDVDNATVQFEFAEIKETLRLEFQYQKTSSYLDFLKTKGNRYRLMLLASLGLFSQWSGNGLVSYYATDVYNSIGIRDSDTQLGINGGLTILSLIVSVSCALLVDRVGRRPLFISATASMCVTFIVWTIASSQQEKTKSKAAGQAVIAMIWIFSVAYALAWSGLLVAYTVEILPFKIRAKGLMIMNLFIQIALTINQYVNPYGFEYLHPTWKFYTIYSCWIFLELVFVTVFYVETRGPTLEEVAKIFDGDEAEVAHVDLEQIEKQVVTTGYEKDDNVRIEQVRTSS bitunicate_ascomycetes Pyrenophora_teres_f._teres_0-1 Pyrenophora_teres_f._teres_0-1 GL534903 9881..10068 Ellwood,S.R.,_Liu,Z.,_Syme,R.A.,_Lai,Z.,_Hane,J.K.,_Keiper,F.,_Moffat,C.S.,_Oliver,R.P._and_Friesen,T.L. NA 0:188 ##Genome-Assembly-Data-START##Assembly_Method_::_Abyss_v._1.0.14Assembly_Name_::_PyrTer_1.0Genome_Coverage_::_20xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 07-DEC-2010 Pyrenophora_teres_f._teres_0-1_unplaced_genomic_scaffold_scaffold_191165,_whole_genome_shotgun_sequence. NA Pyrenophoraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pyrenophora_teres_E3RSS5_PYRTT.gb Pyrenophora 311325035 Genome_Biol._11_(11),_R109_(2010) fungi GL534903 hypothetical_protein NA Pleosporales sac_fungi 21067574 188 Unknown genomic_DNA 861557 0-1 NA barley_net-spot_blotch_disease_agent NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 861557 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Pleosporaceae,_Pyrenophora A_first_genome_assembly_of_the_barley_fungal_pathogen_Pyrenophora_teres_f._teres NA GL534903.1 ATGGGTTTCACCGACAAGTTCACGCCCAAGATGGGTGCCGTTGCTAAGAGCAGGGCCGATGTCGAGGCTGCTCAAGCTGAGGCCCCTCATCTGAAGAAGGTCAACTGGAAATCCGACCCTGGTCTACGGAAGCTCTACTTCTATGCCTTCTTCATATGTATCGCCTCTGCGACCACAGGTTACGACGG > 941 PTT_15817 NA hypothetical_protein EFQ88340.1 NA MGLMLKKPQGVAGSTAPAILVGLFVAFGGVLYGYDTGTIGGILGMKHWRDLFSTGFINKKDNQPDVTAEQTSLIVSILSAGTFFGALTAAPTADFFGRRLGLVISTVVFCVGVVLQTIATAIPLFVAGRFFAGYGVGMISAIIPLYQSETAPKWIRGAIVGCYQFAITIGLLLAAIVDNATKDRPDTGSYRIPIAVQFAWAIVLFVGCIWLPETPRWFIKKGRPEQAAKSLSTLRRLNVEDPSLVEELAEITANHEYEMSLGKASYFDCFRGNLGKRLLTGCLLQSLQQLTGVNFIFYYGTSFFQNSGIKNPFVVSMITSCVNVASTIPGLYLVEKWGRRNLLLFGAVGMALCQFVVAITGTVAGTENIAAQQALIAFVCIYIFFFACSWGPVAWVVTGEIFPLKVRAKSLSMTTASNWLLNFAIGYATPYMVNSGPGNANMGAKVFFVWGGCCFICIFFVYGLIYETKGLSLEQVDELYGKCAHAWKSPGFVPSVSFQDVQDIGADNRRASLTEIESDAQRKRSATYNEKLAV bitunicate_ascomycetes Pyrenophora_teres_f._teres_0-1 Pyrenophora_teres_f._teres_0-1 GL536439 2892..2989 Ellwood,S.R.,_Liu,Z.,_Syme,R.A.,_Lai,Z.,_Hane,J.K.,_Keiper,F.,_Moffat,C.S.,_Oliver,R.P._and_Friesen,T.L. NA 0:98 ##Genome-Assembly-Data-START##Assembly_Method_::_Abyss_v._1.0.14Assembly_Name_::_PyrTer_1.0Genome_Coverage_::_20xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 07-DEC-2010 Pyrenophora_teres_f._teres_0-1_unplaced_genomic_scaffold_scaffold_192727,_whole_genome_shotgun_sequence. NA Pyrenophoraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pyrenophora_teres_E3S106_PYRTT.gb Pyrenophora 311320365 Genome_Biol._11_(11),_R109_(2010) fungi GL536439 hypothetical_protein NA Pleosporales sac_fungi 21067574 98 Unknown genomic_DNA 861557 0-1 NA barley_net-spot_blotch_disease_agent NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 861557 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Pleosporaceae,_Pyrenophora A_first_genome_assembly_of_the_barley_fungal_pathogen_Pyrenophora_teres_f._teres NA GL536439.1 ATGGGTCTGATGTTGAAGAAGCCCCAGGGCGTGGCTGGCTCTACCGCGCCGGCCATTCTCGTCGGTTTGTTCGTCGCCTTTGGTGGTGTTCTTTACGG > 942 PTT_17165 NA hypothetical_protein EFQ87359.1 NA MFEKFPKINNVYFLAIVATMGGMLFGFDISSMSAIIPTSQYMQVNSPAQAFRGAIGSALAAGSIIGSVMAGPISDKFGRRDALLFACIWWLVGTAIQVATINRGMLIAGRILNGVTVGITSSQVPVYLAEISKHSQRGAIIIIQQLAIEWGILIMYFIGYGCSFIPGETASFRTAWGIQYVPCVFFMIGLPFLPESPRWLAKVDRTEEAIHVLAAIQADGNIEDPYVVAEYEEIITTLTAERLAPQGWRKFVLNGMWKRTLAGFSVQAWQQLSGANIMTYYVTYLFAMAGLSGNINLVSSGIQYALFIIFSSIMFFFVDKIGRRTLLVWGALSMGLCHFVVGGTLGAHSTHVPGGVNGDANVVMLVHGSPAYTVIAFCYLLIIFYALTLAPICWVYAAEVWSLETRASGMGISATGNWLFNFAIGFFIPPAFVNIRWGIFIVFGVLCILAAIQFFFTYPETCGKTLEEIEVLFSKNGPHAWQTKMGSEHLARDIEHVAAAQAKGDARASIERVIKKEKGETEKMETA bitunicate_ascomycetes Pyrenophora_teres_f._teres_0-1 Pyrenophora_teres_f._teres_0-1 GL537047 28369..28524 Ellwood,S.R.,_Liu,Z.,_Syme,R.A.,_Lai,Z.,_Hane,J.K.,_Keiper,F.,_Moffat,C.S.,_Oliver,R.P._and_Friesen,T.L. NA 0:156 ##Genome-Assembly-Data-START##Assembly_Method_::_Abyss_v._1.0.14Assembly_Name_::_PyrTer_1.0Genome_Coverage_::_20xSequencing_Technology_::_Illumina##Genome-Assembly-Data-END## NA 07-DEC-2010 Pyrenophora_teres_f._teres_0-1_unplaced_genomic_scaffold_scaffold_193349,_whole_genome_shotgun_sequence. NA Pyrenophoraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pyrenophora_teres_E3S3T1_PYRTT.gb Pyrenophora 311318768 Genome_Biol._11_(11),_R109_(2010) fungi GL537047 hypothetical_protein NA Pleosporales sac_fungi 21067574 156 Unknown genomic_DNA 861557 0-1 NA barley_net-spot_blotch_disease_agent NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 861557 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Pleosporaceae,_Pyrenophora A_first_genome_assembly_of_the_barley_fungal_pathogen_Pyrenophora_teres_f._teres NA GL537047.1 ATGTTTGAGAAATTCCCCAAGATCAACAATGTCTACTTCCTGGCAATCGTTGCCACGATGGGTGGCATGCTCTTCGGATTCGACATCTCATCCATGAGTGCTATTATCCCAACCAGCCAATATATGCAAGTTAACAGTCCAGCTCAAGCCTTCCGA > 943 PTRG_00501 NA high_affinity_glucose_transporter XP_001930834.1 NA MFEKVPKINNVYYLAIVATMGVQQGAIGSALAAGSILGSVMAGPISDKFGRRDALLFACIWWLVGTAIQVATINRGMLIAGRILNGVTVGITSSQVPVYLAEISKHSQRGAIIIIQQLAIEWGILIMYFIGYGCSFIPGETASFRTAWGIQYVPCVFFMIGLPFLPESPRWLAKVDRTEEAIHVLAAIQADGNIEDPYVVAEYEEIITTLTAERLAPQGWRKFVLNGMWKRTLAGFSVQAWQQLSGANIMTYYVTYLFAMAGLSGNINLVSSGIQYALFIIFSSIMFFFVDKIGRRTLLVWGAISMGVCHFVVGGTLGAHSTYVPGGVNGDANVVMLVHGSPAYTVIAFCYLLIIFYALTLAPICWVYAAEVWSLETRASGMGISATGNWLFNFAIGFFIPPAFVNIRWGIFIVFGVLCILAAVQFFFTYPETCGKTLEEIEVLFSKDGPHAWQTKKGSDHLARDIKHVAAAQAKGDARASIERVIKKEKGETETTEAV bitunicate_ascomycetes Pyrenophora_tritici-repentis_Pt-1C-BFP Pyrenophora_tritici-repentis_Pt-1C-BFP XM_001930799 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_MacCallum,I.A.,_Young,S.,_LaButti,K.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_White,J.,_Yandava,C.,_Kodira,C.,_Guigo,R.,_Borodovsky,M.,_Zeng,Q.,_OLeary,S.,_Alvarado,L.,_Pandelova,I._and_Ciuffetti,L. NA 0:1500 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001939244).COMPLETENESS:_incomplete_on_both_ends. NA 30-MAY-2008 Pyrenophora_tritici-repentis_Pt-1C-BFP_high_affinity_glucose_transporter,_mRNA. NA Pyrenophoraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pyrenophora_tritici_B2VR74_PYRTR.gb Pyrenophora 189188989 Unpublished fungi XM_001930799 NA NA Pleosporales sac_fungi NA 1500 NA mRNA NA Pt-1C-BFP NA Pyrenophora_tritici-repentis_(Died.)_Drechsler_1923 NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 426418 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Pleosporaceae,_Pyrenophora Genome_Sequence_of_Pyrenophora_tritici-repentis NA XM_001930799.1 ATGTTTGAGAAAGTCCCTAAGATCAACAATGTCTACTATCTGGCGATCGTTGCCACCATGGGTGTTCAACAAGGAGCCATCGGATCCGCGCTTGCTGCTGGCTCAATACTCGGATCCGTAATGGCTGGACCAATCTCTGATAAATTTGGTCGTCGCGATGCACTTCTTTTCGCCTGCATATGGTGGCTCGTGGGCACTGCTATTCAGGTTGCAACCATCAACCGAGGCATGCTCATCGCTGGCCGAATCCTGAACGGTGTCACTGTCGGTATCACTTCATCCCAGGTGCCGGTATACCTCGCAGAGATCTCTAAGCACTCCCAACGTGGTGCAATTATCATCATTCAACAATTGGCTATCGAATGGGGTATTCTCATCATGTATTTTATAGGTTACGGCTGCAGCTTCATTCCCGGAGAGACAGCATCGTTCCGCACCGCCTGGGGCATCCAATACGTCCCATGTGTGTTCTTCATGATCGGTCTGCCGTTCCTACCAGAATCACCGCGCTGGCTCGCCAAAGTCGATCGCACAGAAGAAGCAATTCATGTTCTTGCCGCTATCCAGGCCGATGGGAATATCGAAGATCCCTACGTTGTCGCTGAATACGAGGAAATTATCACTACTCTCACTGCCGAGCGCCTCGCCCCCCAAGGATGGCGAAAATTCGTTCTCAACGGCATGTGGAAACGCACTCTCGCCGGATTCTCTGTCCAGGCGTGGCAACAGCTGAGTGGTGCCAATATCATGACGTACTACGTAACCTATCTGTTCGCCATGGCAGGACTGAGTGGAAACATCAACTTAGTATCCTCGGGTATTCAGTATGCCTTGTTCATCATCTTCTCATCGATCATGTTCTTCTTTGTCGATAAGATTGGACGCAGGACCTTGCTCGTATGGGGTGCAATATCGATGGGCGTGTGTCACTTCGTGGTCGGCGGCACTCTTGGAGCACACAGCACCTATGTGCCTGGTGGCGTGAATGGGGACGCGAACGTGGTAATGCTTGTCCATGGATCACCGGCTTATACTGTCATAGCGTTTTGCTACCTGCTGATTATATTCTACGCCCTTACCTTGGCTCCGATATGTTGGGTGTACGCCGCCGAGGTATGGTCTTTGGAAACCCGGGCCTCAGGTATGGGCATCAGCGCGACTGGCAACTGGTTGTTCAATTTCGCTATCGGATTCTTCATTCCACCTGCGTTTGTCAACATCAGATGGGGGATCTTTATTGTCTTTGGCGTACTGTGTATACTGGCGGCAGTTCAGTTCTTCTTCACATACCCCGAGACTTGTGGCAAGACTTTGGAAGAGATTGAAGTACTGTTCAGCAAAGATGGTCCCCATGCGTGGCAGACCAAGAAGGGCAGTGACCATCTCGCCCGTGATATCAAACATGTTGCAGCTGCTCAGGCCAAGGGCGATGCGCGGGCTAGCATTGAAAGGGTTATCAAGAAAGAGAAGGGTGAGACTGAGACGACGGAGGCTGTGTAG > 944 PTRG_02293 NA plastidic_glucose_transporter_4 XP_001932626.1 NA MSRRKPDIEATEPASSSISSKSDFGTAQHHERRGSHPRQASVAAKLRNPLAGLSEEQVIADVDAWCVEKGLQEHQDAFRKGALIARVGQRDDGFEYVSQLSTEEKDLLRYEVNHRWSQPFMLYFLVVLCAGSAIVQGMDQTAVNGAQEFYFQEFNIGEDQVWLRGLLNGAPYLCSCLIGCWSNAPLNKYFGRRGTIFISCIISFITGIWMAAADSWPNLLVARFMLGFAVGAKSSTTPVYAAESAPKTIRGALTMMWQMWTAFGIMLGFIVSVAFQNVTIIGGQYSPWRWMLASTSIPPMVVCVQVYFCPESPRWYMEKGKFDKAFKALCRLRRHKMQAARDMYYAYKLLEIEAAEREGRNAWKEFFTVRRNRRAAQSAFFVMFMQQFCGVNVIAYYSTAIFREAGFTRSEALLTSMGTGITNFLFAIPAIYTIDTFGRRNLLLTTFPLMGLCLLWCGLSFYLPMDPETNRPSQERLASIAAAIYTFMAVYSPGEGPVPFTYSAEAFPLHLRDVGMSFATATCWGFNFILSLTWPALSAAFTPTGAFCWYAGWNFFGFVYAYFFLPETKALTLEELDTVFDVGNRQFSAYYRKKLPWYMRKHILRQNVEPMEPLFELHEKSTGRDYAKEPFGGGGEAGAVGGTEIVEKSEVNKM bitunicate_ascomycetes Pyrenophora_tritici-repentis_Pt-1C-BFP Pyrenophora_tritici-repentis_Pt-1C-BFP XM_001932591 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_MacCallum,I.A.,_Young,S.,_LaButti,K.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_White,J.,_Yandava,C.,_Kodira,C.,_Guigo,R.,_Borodovsky,M.,_Zeng,Q.,_OLeary,S.,_Alvarado,L.,_Pandelova,I._and_Ciuffetti,L. NA 0:1965 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001939244).COMPLETENESS:_incomplete_on_both_ends. NA 30-MAY-2008 Pyrenophora_tritici-repentis_Pt-1C-BFP_plastidic_glucose_transporter_4,_mRNA. NA Pyrenophoraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pyrenophora_tritici_B2VVH8_PYRTR.gb Pyrenophora 189192573 Unpublished fungi XM_001932591 NA NA Pleosporales sac_fungi NA 1965 NA mRNA NA Pt-1C-BFP NA Pyrenophora_tritici-repentis_(Died.)_Drechsler_1923 NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 426418 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Pleosporaceae,_Pyrenophora Genome_Sequence_of_Pyrenophora_tritici-repentis NA XM_001932591.1 ATGTCTCGCCGCAAGCCAGACATAGAGGCCACAGAGCCTGCATCTTCTTCAATCAGCAGTAAATCCGATTTCGGCACTGCGCAACACCATGAACGCAGGGGTAGTCATCCTCGGCAAGCCTCCGTCGCTGCAAAGCTCCGTAATCCTTTGGCCGGCCTGAGTGAAGAACAAGTCATTGCCGACGTCGACGCTTGGTGTGTAGAAAAGGGTCTACAAGAGCACCAGGACGCCTTTCGGAAAGGTGCACTGATTGCCCGTGTGGGCCAGCGCGACGACGGCTTCGAATATGTCAGTCAACTATCCACGGAAGAGAAGGATCTGCTCAGGTATGAAGTCAACCATCGATGGTCACAGCCCTTCATGTTGTACTTTTTGGTCGTTCTCTGCGCTGGCTCTGCCATTGTGCAAGGCATGGACCAGACGGCAGTAAACGGTGCTCAGGAATTCTATTTCCAAGAATTCAACATTGGAGAAGACCAGGTATGGCTTCGCGGCCTACTCAATGGCGCACCATACCTCTGTTCCTGTCTGATCGGTTGCTGGTCGAATGCACCACTCAACAAGTACTTTGGTCGTCGAGGCACCATCTTCATTTCGTGCATCATCTCATTCATTACTGGAATATGGATGGCAGCCGCGGATAGCTGGCCAAACCTCCTCGTTGCTCGATTCATGCTTGGCTTTGCGGTCGGTGCAAAGTCGTCGACGACACCCGTCTACGCGGCGGAATCTGCACCGAAGACTATTCGTGGAGCCCTGACAATGATGTGGCAGATGTGGACGGCATTTGGCATCATGCTTGGTTTTATCGTGTCAGTCGCTTTTCAGAATGTCACCATTATTGGAGGGCAGTACTCGCCGTGGAGATGGATGTTGGCCAGTACCAGTATCCCTCCGATGGTTGTTTGTGTCCAAGTCTATTTCTGCCCGGAATCGCCCCGCTGGTACATGGAGAAAGGCAAGTTCGACAAAGCCTTCAAAGCTCTTTGCAGACTTCGCAGGCACAAGATGCAAGCTGCACGCGACATGTACTATGCATATAAGCTCCTCGAAATCGAGGCCGCAGAGCGCGAAGGCCGCAACGCTTGGAAGGAATTCTTTACTGTCCGACGTAACCGCCGCGCTGCACAAAGCGCATTCTTTGTGATGTTTATGCAACAGTTCTGTGGGGTCAATGTGATCGCCTACTACAGTACGGCCATTTTCCGAGAAGCTGGCTTCACGCGGTCTGAAGCGTTGCTCACATCCATGGGTACTGGTATTACAAACTTCCTCTTCGCGATCCCCGCCATCTACACGATTGACACCTTCGGCCGTCGTAACCTACTACTTACTACTTTCCCGCTCATGGGCCTTTGTTTGCTTTGGTGTGGGTTGTCCTTTTACCTGCCGATGGACCCAGAGACAAATCGACCAAGTCAGGAACGTCTTGCATCGATTGCCGCAGCTATATACACCTTCATGGCCGTATACTCGCCTGGCGAGGGCCCAGTGCCTTTTACGTACTCCGCCGAAGCATTCCCCCTGCATCTCCGCGACGTGGGTATGTCTTTCGCGACCGCGACTTGCTGGGGCTTCAACTTCATCCTTTCACTCACCTGGCCTGCCCTTAGTGCTGCGTTCACCCCCACTGGTGCTTTCTGCTGGTACGCTGGGTGGAACTTCTTTGGATTCGTCTATGCATACTTTTTCCTGCCCGAAACCAAGGCCCTCACACTAGAAGAACTGGATACTGTGTTTGACGTCGGAAACCGTCAGTTCTCGGCCTACTACAGGAAGAAGTTGCCATGGTATATGCGAAAGCACATTTTACGCCAGAATGTGGAGCCTATGGAGCCGCTTTTCGAACTCCATGAGAAGAGTACAGGTAGGGACTATGCGAAAGAGCCTTTCGGTGGTGGAGGCGAAGCAGGCGCAGTGGGGGGTACCGAGATCGTTGAGAAGAGTGAGGTTAATAAGATGTGA > 945 PTRG_02333 NA maltose_permease_MAL61 XP_001932666.1 NA MTPITPKPHDDSVHANDEKQPQQSHSETITSASISKTISSTLPSASKCDSATPIFPRSASVAEATINAEHSMTLHQGIRQFPKAIAWSVVISLTLVMEGYSTILVPNLFAMDPFRRRFGDLLPNGSYEISANWQTALVNGGLAGQILGLFVTGTVAERIGYRHTLMVGLTAMNLFIFVTFFAGSKGVLLAGQCLLGMPWGMFQCVCTVYAADVCPVALRAYLTTWVNACWVLGQLIASIVMRGMISDMTEWSYRIPFGLQWIFPLPILVAVCFAPESPWWFIRQNRFADAKASLHRLRTKPKSVSDVEFDLVLVGTMEGMIETNDREQRMQTGTSYKDCFKGVDRRRTEITCMVWIIQILCGSTFMGFSTYFYEQAGIASSHAFTLSLAQFALGLIGVIISWALMSHFGRRTLYLSGQTLTCLFVLLIGILACIPQPHTNTTSTFTPLNWSIAALLLAFTLTYDATLGPICYALVSEMPSTRLRSKTIVLARNCYNVGGIVTNVITPRMLNPTAWGWGAKTGFFWAGTSVLGLGWSFWRLPEPKGRTFGELDELFERGVAAREFGGWAAGDKSSVEGEGGVKEGV bitunicate_ascomycetes Pyrenophora_tritici-repentis_Pt-1C-BFP Pyrenophora_tritici-repentis_Pt-1C-BFP XM_001932631 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_MacCallum,I.A.,_Young,S.,_LaButti,K.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_White,J.,_Yandava,C.,_Kodira,C.,_Guigo,R.,_Borodovsky,M.,_Zeng,Q.,_OLeary,S.,_Alvarado,L.,_Pandelova,I._and_Ciuffetti,L. NA 0:1758 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001939245).COMPLETENESS:_incomplete_on_both_ends. NA 30-MAY-2008 Pyrenophora_tritici-repentis_Pt-1C-BFP_maltose_permease_MAL61,_mRNA. NA Pyrenophoraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pyrenophora_tritici_B2VY43_PYRTR.gb Pyrenophora 189192654 Unpublished fungi XM_001932631 NA NA Pleosporales sac_fungi NA 1758 NA mRNA NA Pt-1C-BFP NA Pyrenophora_tritici-repentis_(Died.)_Drechsler_1923 NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 426418 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Pleosporaceae,_Pyrenophora Genome_Sequence_of_Pyrenophora_tritici-repentis NA XM_001932631.1 ATGACACCCATCACTCCTAAACCACACGATGACTCCGTCCACGCCAACGATGAAAAGCAACCCCAGCAATCCCACTCAGAAACCATCACCTCAGCCAGCATATCCAAAACAATCTCCTCCACCCTCCCATCAGCATCAAAATGCGACTCTGCAACCCCCATCTTCCCGCGCTCCGCCTCAGTAGCCGAAGCAACAATCAACGCAGAACACTCCATGACGCTCCACCAAGGCATCCGCCAATTCCCCAAAGCCATAGCCTGGTCCGTCGTCATATCCCTGACACTCGTCATGGAAGGCTACTCCACCATCCTCGTCCCCAACCTCTTCGCTATGGACCCCTTCCGCCGCCGATTCGGCGACTTACTGCCAAACGGGTCGTACGAGATCAGCGCGAACTGGCAGACTGCGCTTGTGAACGGCGGGCTGGCGGGCCAGATACTAGGGCTTTTTGTTACGGGGACTGTGGCGGAGAGGATTGGGTACAGGCATACGCTTATGGTGGGGTTGACGGCGATGAATCTCTTCATCTTTGTTACGTTTTTTGCGGGCAGCAAGGGGGTTTTGTTGGCCGGGCAGTGTTTGCTGGGGATGCCGTGGGGTATGTTTCAGTGTGTTTGTACGGTTTATGCGGCGGATGTTTGTCCGGTGGCGCTGAGGGCGTATTTGACGACGTGGGTGAACGCATGTTGGGTTCTTGGTCAACTGATCGCTTCCATTGTCATGCGCGGTATGATATCGGATATGACAGAGTGGTCCTACCGCATCCCGTTTGGTCTCCAGTGGATCTTTCCCTTGCCCATCCTTGTGGCCGTCTGCTTCGCTCCAGAGTCGCCCTGGTGGTTCATTCGCCAAAACCGCTTCGCCGACGCAAAGGCTTCGCTACACCGGCTACGCACTAAACCCAAGTCCGTTTCTGACGTCGAGTTCGACTTGGTTCTGGTGGGCACGATGGAAGGCATGATTGAGACCAACGACCGCGAACAGCGGATGCAGACAGGCACGAGCTACAAAGACTGTTTCAAAGGTGTTGATAGACGCCGAACAGAAATCACGTGTATGGTATGGATCATCCAGATATTATGCGGTAGCACATTCATGGGTTTCTCAACCTACTTCTACGAACAAGCCGGCATCGCCTCCTCCCACGCCTTCACCCTCTCCCTCGCGCAATTTGCCCTCGGCCTCATCGGCGTCATCATCTCGTGGGCACTAATGTCGCACTTCGGACGACGAACACTCTACCTCTCCGGTCAAACCCTCACATGTCTCTTCGTCCTGCTCATCGGCATTCTAGCCTGTATCCCACAACCCCACACAAACACGACCAGCACATTCACCCCCCTCAACTGGTCCATCGCCGCACTCCTCCTCGCCTTCACTCTCACCTACGACGCCACCCTCGGCCCCATCTGCTACGCCCTCGTCTCCGAGATGCCCAGCACGCGGCTCCGCAGCAAGACGATTGTGCTAGCGCGGAATTGCTATAATGTGGGTGGTATCGTGACGAATGTTATTACGCCGCGCATGCTGAATCCGACGGCTTGGGGGTGGGGGGCTAAGACGGGGTTCTTTTGGGCGGGGACGAGTGTGCTGGGGTTGGGGTGGAGCTTTTGGAGGCTGCCGGAGCCGAAGGGGAGGACGTTTGGGGAGTTGGATGAGCTATTTGAGAGGGGGGTTGCTGCGAGGGAGTTTGGCGGGTGGGCGGCGGGGGATAAGAGTTCTGTTGAGGGGGAGGGGGGTGTGAAGGAGGGGGTTTAG > 946 PTRG_03849 NA sugar_transporter_STL1 XP_001934182.1 NA MPRKYLGGSGEPLTVWISIAASTVLIFYGYDQGVFGNVIISENFLHTFGYPSANMQGIMTSIYNIGCFIGAMSTIWTGDILGRPRQILFGSTVIGIGAIIQSCSSTVATMMAGRVVAGLGTGMNTATAGVWQAETSKMSSRGKLVIIQMANCITGFSISNWLTLGLSFAPRDIAWRFPLAFQLFFTLCIYATCPFLPDSPRLLIRKGKHEEALEVLSALEGHGATPESASVVTQYNIIKDILDREHMNTYTWMQLLTGKGPSGVLRRMLLGAWMQAMNQISGINVTSYYMSYIFINSLGISELLSRILAAAGSVDYLIFACLAYFVVERYGRRKVMMVSAAACSICWIVIATSQGETEKGGDSKKLGIVAVSFFFVFFASFGMGVLGVPWLYPTEINALEMRTKGASLAMATNWICNYGVVQATLPGIQNLGYKFWIIWAVICFSFIPITYFLYPETANRTLEDIDRFFETKPGLLIHHNKLAVQLHRPVEFIEADARIAAHEETKSRKISKKPSTEHAEMKETV bitunicate_ascomycetes Pyrenophora_tritici-repentis_Pt-1C-BFP Pyrenophora_tritici-repentis_Pt-1C-BFP XM_001934147 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_MacCallum,I.A.,_Young,S.,_LaButti,K.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_White,J.,_Yandava,C.,_Kodira,C.,_Guigo,R.,_Borodovsky,M.,_Zeng,Q.,_OLeary,S.,_Alvarado,L.,_Pandelova,I._and_Ciuffetti,L. NA 0:1578 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001939246).COMPLETENESS:_incomplete_on_both_ends. NA 30-MAY-2008 Pyrenophora_tritici-repentis_Pt-1C-BFP_sugar_transporter_STL1,_mRNA. NA Pyrenophoraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pyrenophora_tritici_B2W351_PYRTR.gb Pyrenophora 189195687 Unpublished fungi XM_001934147 NA NA Pleosporales sac_fungi NA 1578 NA mRNA NA Pt-1C-BFP NA Pyrenophora_tritici-repentis_(Died.)_Drechsler_1923 NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 426418 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Pleosporaceae,_Pyrenophora Genome_Sequence_of_Pyrenophora_tritici-repentis NA XM_001934147.1 ATGCCGCGCAAATACCTTGGGGGCTCCGGGGAGCCGTTGACAGTCTGGATATCGATCGCAGCGAGTACAGTGCTCATCTTCTACGGTTACGATCAAGGCGTTTTCGGAAATGTTATCATATCGGAGAACTTTCTGCATACCTTCGGGTATCCGTCCGCCAACATGCAGGGCATCATGACATCCATATACAACATCGGATGCTTTATCGGGGCTATGAGCACCATATGGACGGGTGATATCCTCGGACGACCAAGACAAATTCTTTTCGGCTCTACAGTAATTGGCATTGGCGCTATTATTCAGTCGTGTAGCTCGACCGTCGCGACCATGATGGCTGGACGCGTTGTGGCTGGACTTGGGACTGGTATGAACACGGCAACAGCTGGTGTCTGGCAAGCCGAGACTAGCAAAATGAGCAGTCGAGGCAAGCTTGTCATTATTCAGATGGCCAACTGCATCACTGGTTTCAGTATATCGAACTGGCTCACGCTTGGTTTATCTTTTGCACCGCGCGACATCGCATGGCGTTTCCCCCTAGCTTTTCAACTCTTTTTTACCCTGTGCATCTATGCCACCTGCCCTTTTCTCCCAGATTCGCCTCGTCTTCTCATACGAAAGGGCAAGCATGAAGAAGCACTAGAGGTTCTCTCGGCGCTCGAAGGCCACGGAGCAACACCTGAGTCAGCTTCGGTCGTCACGCAGTACAACATCATCAAGGACATTCTGGACCGCGAACACATGAACACATACACTTGGATGCAGCTGCTTACCGGAAAAGGACCGAGCGGCGTATTGCGACGCATGCTCTTGGGTGCATGGATGCAGGCAATGAACCAGATCTCGGGGATCAATGTGACATCCTACTACATGTCGTACATCTTCATAAACTCACTCGGAATTAGCGAGCTCCTTTCACGCATCCTGGCTGCCGCGGGCTCGGTCGACTATCTCATCTTCGCCTGTTTGGCATACTTCGTCGTTGAGCGATATGGCCGCCGAAAGGTCATGATGGTTTCCGCTGCGGCATGCTCAATTTGCTGGATTGTTATTGCTACTTCACAGGGCGAAACGGAGAAGGGCGGAGACTCCAAAAAGCTCGGCATTGTCGCCGTGTCGTTCTTCTTCGTGTTTTTCGCCAGTTTCGGCATGGGCGTGCTGGGAGTACCGTGGCTGTACCCGACTGAGATCAACGCTCTTGAGATGCGAACAAAAGGCGCTTCGCTTGCGATGGCAACAAACTGGATTTGCAATTATGGTGTCGTACAGGCCACTTTGCCAGGCATTCAAAACCTCGGATACAAGTTCTGGATCATATGGGCAGTCATCTGCTTCAGCTTCATCCCCATCACGTACTTTCTCTACCCGGAGACAGCGAATCGTACATTGGAAGACATTGATCGATTTTTCGAAACCAAGCCCGGTCTACTTATCCATCACAATAAGCTAGCCGTTCAGCTACATCGTCCTGTGGAGTTCATCGAAGCCGATGCACGGATTGCTGCACATGAGGAAACTAAGTCTAGGAAGATTAGTAAGAAACCTAGCACAGAACATGCCGAGATGAAAGAAACAGTCTGA > 947 PTRG_05045 NA sugar_transporter_family_protein XP_001935378.1 NA MADKYDGAEEREYVHPPTHHKMSAGRYIATRIPTLKPAHDKVANPIALLRMLNLQQWLFFLVAFFAWTWDAFDFFTVSLTVSDLAETFGKTKTDITWGITLVLMLRSVGSIIFGLAADRYGRKWPFIVNNLLFIVLELGTGFCSTYKEFLAVRALFGIAMGGLYGNAAATALEDCPEQARGIISGMLQQGYAFGYLLATVFSRAFVNTVGHGWRPLFWFGAGPPVLIILFRLCLPETKAYLERKRLREEEPNAAKVFFEEGKVALKRHWMVLVYLVLLMAGFNFMSHGSQDLYPTMLSNQYNFSPNQVTVTQVVANLGAMCGGTIVGYSSSIFGRRICIIVMCVIGGALLYPYTFTSSNAVIAAAFFQQFCVQGAWGVIPIHLMELSPGAFRTFVVGTSYQLGNLASSASSTIEATIGEQFPLPPKGKTERYKYGLVICIFMGCVYAYVILLTAIGPEYRGKNFDAAADEDLAVVTGANDKLGGRHDSEVEAKDHV bitunicate_ascomycetes Pyrenophora_tritici-repentis_Pt-1C-BFP Pyrenophora_tritici-repentis_Pt-1C-BFP XM_001935343 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Ma,L.-J.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_MacCallum,I.A.,_Young,S.,_LaButti,K.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_White,J.,_Yandava,C.,_Kodira,C.,_Guigo,R.,_Borodovsky,M.,_Zeng,Q.,_OLeary,S.,_Alvarado,L.,_Pandelova,I._and_Ciuffetti,L. NA 0:1491 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001939247).COMPLETENESS:_incomplete_on_both_ends. NA 30-MAY-2008 Pyrenophora_tritici-repentis_Pt-1C-BFP_sugar_transporter_family_protein,_mRNA. NA Pyrenophoraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Pyrenophora_tritici_B2W3J5_PYRTR.gb Pyrenophora 189198080 Unpublished fungi XM_001935343 NA NA Pleosporales sac_fungi NA 1491 NA mRNA NA Pt-1C-BFP NA Pyrenophora_tritici-repentis_(Died.)_Drechsler_1923 NA forward Pleosporomycetidae NA NA Dikarya Pleosporineae Pezizomycotina NA NA NA NA eukaryotes NA 426418 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Dothideomycetes,_Pleosporomycetidae,_Pleosporales,_Pleosporineae,_Pleosporaceae,_Pyrenophora Genome_Sequence_of_Pyrenophora_tritici-repentis NA XM_001935343.1 ATGGCGGATAAGTACGATGGCGCTGAGGAGCGTGAATACGTTCATCCCCCTACCCATCACAAGATGTCGGCTGGTCGCTACATCGCAACGCGCATTCCGACGCTCAAACCCGCACACGACAAGGTGGCTAATCCGATTGCTCTGCTCCGCATGTTGAACCTGCAGCAATGGCTTTTCTTCCTTGTCGCCTTTTTCGCTTGGACGTGGGATGCGTTTGACTTCTTCACTGTCTCCTTGACTGTGTCGGATCTGGCTGAGACGTTTGGCAAGACAAAGACGGATATTACGTGGGGTATCACGCTGGTGCTTATGCTGAGGAGCGTGGGTAGTATCATCTTTGGTTTGGCGGCCGATCGGTATGGGAGGAAGTGGCCGTTTATTGTTAATAATTTGTTGTTTATTGTGTTGGAGTTAGGGACGGGGTTTTGCTCTACGTATAAAGAGTTCTTGGCGGTTAGGGCGTTGTTTGGTATTGCTATGGGTGGGTTGTATGGGAATGCTGCTGCTACTGCCCTTGAAGACTGCCCTGAACAAGCCCGTGGTATCATCTCGGGTATGCTACAACAAGGGTATGCCTTTGGATACCTTCTCGCCACTGTCTTCTCCCGCGCTTTTGTCAACACCGTCGGCCATGGATGGCGCCCACTTTTCTGGTTCGGTGCCGGACCCCCTGTCCTAATTATCCTCTTCCGTCTCTGTCTCCCAGAAACGAAAGCTTACCTCGAGCGCAAGCGACTCCGCGAAGAAGAGCCCAACGCAGCCAAGGTATTTTTTGAAGAGGGCAAGGTCGCACTGAAGCGTCACTGGATGGTGCTTGTGTACCTTGTGTTGTTGATGGCTGGCTTCAACTTCATGTCGCATGGAAGTCAGGATCTATACCCCACCATGTTGAGCAACCAGTACAACTTCTCTCCTAACCAGGTCACCGTCACTCAGGTCGTCGCCAACCTAGGCGCCATGTGCGGCGGTACTATCGTTGGATATTCGTCCTCCATCTTCGGTCGTCGCATATGTATAATTGTCATGTGTGTCATCGGCGGCGCACTCCTCTACCCATACACCTTCACCTCCAGCAACGCCGTCATAGCTGCGGCCTTCTTCCAACAATTCTGCGTCCAAGGTGCCTGGGGCGTCATTCCCATCCACCTCATGGAACTCTCACCCGGCGCCTTCCGTACCTTTGTCGTCGGAACAAGTTATCAGCTCGGTAACCTTGCGTCCTCGGCCTCCTCCACAATTGAAGCCACAATTGGCGAGCAATTCCCGCTACCACCAAAGGGAAAGACGGAGCGGTACAAGTACGGTCTTGTCATTTGCATCTTCATGGGCTGTGTCTATGCATACGTTATCCTGTTGACGGCAATCGGACCAGAGTACCGGGGCAAGAACTTTGATGCTGCTGCGGATGAAGACCTGGCAGTTGTAACCGGCGCGAACGACAAATTAGGTGGGAGACATGATAGCGAGGTCGAGGCCAAAGACCATGTGTGA > 948 Rmet_5098 NA transporter_protein,_MFS_family YP_587226.1 11 MANQLSEAVPEASVGRQRGTTTTKDLRRVVAAAMVGSVAEWYEFFLYGTASALVFGTHFFKKTGNPVDGLIAAFALYAVGFAARPIGGIVFGYYGDKFGRKYLLQVSLVAVGITTFLMGCLPTFDVIGYWAPALLVTLRLIQGFAFGGEWGGAVLLVSEHSPDDRRGYWASWPQAGVPAGNLVATLILLALSSTLPEQDFLSWGWRVAFWFSAVVVLIGFWIRRKVDDAPIFKESQERREKEHATQQGVRYVLRYHWKEVLIGIGARFAENILYYMVVTFSITYLKLVVGADTTRILKLMFFANALHFMIIPFMGYLSDIIGRKPVYLTGAVLTAAWGFIGFPMMDTGNDWIIMAAIVLGLAIESMTYSPYSALMTEMFPTNVRYTALSLCYQIAPLMAGSLAPLIALSLLEKYHSSTPIALYLVAAAVISIISVAAAKETRGKSLRDVDAEAKARVNG beta_subgroup Cupriavidus_metallidurans_CH34 Cupriavidus_metallidurans_CH34 NC_007974 1789793..1791172 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Martinez,M.,_Goltsman,E.,_Pitluck,S.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_Mergeay,M.,_Benotmane,M.A.,_Vallaeys,T.,_Michaux,A.,_Monchy,S.,_Dunn,J.,_McCorkle,S.,_Taghavi,S.,_van_der_Lelie,D._and_Richardson,P. NA 0:1380 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP000353.On_Mar_24,_2010_this_sequence_version_replaced_gi:94312547.URL_--_http://www.jgi.doe.govJGI_Project_ID:_2351356Source_DNA_and_bacteria_available_from_John_J._Dunn_(jdunn@bnl.gov)Contacts:_John_J._Dunn_(jdunn@bnl.gov)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-PGFFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 21-JAN-2012 Cupriavidus_metallidurans_CH34_megaplasmid,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ralstonia_metallidurans_Q1LD19_RALME.gb Wautersia_Vaneechoutte_et_al._2004 291481467 Unpublished NA NC_007974 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1380 NA genomic_DNA NA CH34 NA Wautersia_metallidurans_(Goris_et_al._2001)_Vaneechoutte_et_al._2004 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 266264 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Cupriavidus Complete_sequence_of_the_chromosome_of_Ralstonia_metallidurans_CH34 NA NC_007974.2 ATGGCGAATCAACTCAGCGAGGCTGTCCCCGAAGCGAGTGTGGGACGACAACGCGGCACGACAACAACAAAAGATCTGCGCCGCGTTGTCGCGGCTGCGATGGTTGGGTCCGTAGCGGAATGGTATGAGTTCTTCCTGTATGGAACGGCATCCGCACTGGTATTCGGGACGCACTTCTTCAAGAAAACAGGGAATCCGGTCGATGGCCTGATCGCGGCCTTCGCGCTCTATGCCGTAGGGTTCGCCGCACGGCCGATCGGCGGGATCGTCTTCGGTTACTACGGCGACAAGTTCGGCCGCAAGTACCTGCTCCAGGTCAGTCTGGTAGCCGTGGGGATCACGACGTTCCTGATGGGCTGCCTTCCCACGTTCGACGTGATCGGGTACTGGGCCCCCGCCCTGCTCGTCACGCTGCGCCTTATCCAGGGCTTTGCCTTCGGTGGCGAATGGGGTGGCGCCGTCCTTCTGGTGAGCGAGCACAGCCCGGACGACCGGCGCGGCTACTGGGCAAGCTGGCCGCAAGCAGGCGTGCCGGCTGGCAACCTCGTCGCCACGCTCATCCTGCTCGCGCTCTCGAGCACGCTGCCGGAACAGGACTTCCTGTCCTGGGGCTGGCGAGTCGCCTTCTGGTTCTCCGCCGTGGTGGTGCTGATCGGGTTCTGGATCCGTCGCAAGGTCGATGATGCGCCGATCTTCAAGGAATCCCAGGAACGGCGCGAAAAGGAACATGCGACCCAGCAAGGCGTCCGGTACGTTCTGCGCTATCACTGGAAGGAAGTGCTGATCGGCATTGGCGCGCGCTTCGCGGAGAACATCCTCTACTACATGGTGGTGACGTTCTCCATCACGTACCTGAAGCTCGTGGTCGGCGCGGATACCACGCGCATTCTCAAGCTGATGTTCTTTGCCAATGCCCTGCACTTCATGATCATTCCGTTCATGGGCTACCTGTCGGACATCATCGGTCGCAAACCGGTGTACCTGACCGGCGCGGTCCTGACGGCGGCCTGGGGCTTCATTGGCTTCCCGATGATGGACACCGGGAACGACTGGATCATCATGGCTGCCATCGTGCTGGGCCTGGCAATCGAGTCGATGACCTACTCGCCCTACTCCGCGCTCATGACCGAGATGTTCCCGACGAACGTCCGATACACCGCGCTCTCGCTGTGCTACCAGATCGCACCGCTGATGGCCGGATCGCTGGCTCCGCTGATCGCGCTGTCGCTGCTGGAGAAATACCACTCCTCCACGCCGATCGCCCTCTACCTGGTGGCCGCCGCCGTGATCTCGATCATCAGCGTTGCCGCCGCGAAGGAAACGCGCGGCAAGTCATTGCGTGACGTCGACGCCGAGGCGAAAGCCCGTGTGAATGGCTGA > 949 Rpic_2063 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bam:Bamb_6282_major_facilitator_superfamily_MFS_1 major_facilitator_superfamily_protein YP_001899629.1 11 MQRPLTADSAPTAIAQHDQDTRAATALSSRMDRLPITRNLWMLVLLISLGGFFEVYDLIFTGYIAPGMEKSGLLKATTDAFFGLHGMAGFIAATFAGLFVGTFGLGWLPDRYGRRTVFTVSLLWYSIGSAIMACQQSPEGLLIWRFLTGIGVGIEIVTIDSYVTELVPQHMRGRAMAFNQMVMFAAAPAAAILSYWLVPTTLLGFEGWRWVVLLGSAGAVLVWFIRRAVPESPRWLAMHGHIDQADAVVRQMEAAAERESGKALPPPLQAVVQPPHRRASLAELWRPPYRSRLIMLIVFNFCQAIGYYGFANWVPTLLIGHGITVTKSLLYSFIIAIALPVGPLLAMAYADRIQRKWLIVGAAFAVIVFGVTFGQLKDPLALIVLGVLISLAGQTISVCYHAYQAELFPTFIRCRANGIVYSASRIGAMFSGFLIAFLLRHLGVPGVFAGITVCMLVVMLAIGGFGPKSNGLRLEELSH beta_subgroup Ralstonia_pickettii_12J Ralstonia_pickettii_12J NC_010682 2174481..2175920 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Meincke,L.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Kuske,C.R.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Marsh,T._and_Richardson,P. NA 0:1440 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001068.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4003028Source_DNA_and_bacteria_available_from_Terry_Marsh_(MARSHT@msu.edu)Contacts:_Terry_Marsh_(MARSHT@msu.edu)_David_Bruce_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 26-JAN-2012 Ralstonia_pickettii_12J_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ralstonia_pickettii_B2U6R5_RALPJ.gb Ralstonia_Yabuuchi_et_al._1996 187927112 Unpublished NA NC_010682 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1440 1 genomic_DNA NA 12J NA Ralstonia_pickettii_(Ralston_et_al._1973)_Yabuuchi_et_al._1996 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 402626 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Ralstonia Complete_sequence_of_chromosome1_of_Ralstonia_pickettii_12J NA NC_010682.1 CTAGTGCGACAGCTCTTCCAGCCGCAGGCCGTTGCTCTTCGGCCCGAAGCCGCCAATCGCCAGCATCACCACCAGCATGCATACGGTGATCCCCGCAAACACGCCCGGCACGCCTAAGTGCCGCAACAGGAAGGCAATCAAAAAGCCCGAGAACATGGCGCCGATGCGGCTGGCCGAATACACGATGCCATTGGCGCGACAGCGGATGAAGGTCGGGAACAGCTCGGCCTGGTAGGCGTGATAGCACACCGAAATGGTCTGCCCAGCGAGGCTGATCAGCACGCCCAGCACGATCAACGCGAGTGGATCTTTCAGTTGCCCGAACGTCACGCCGAACACGATGACGGCAAACGCGGCACCAACGATCAGCCACTTGCGCTGGATGCGGTCGGCATAGGCCATGGCCAGCAACGGCCCGACGGGCAGCGCAATGGCGATGATGAACGAATACAGGAGGCTCTTGGTCACGGTGATGCCGTGGCCGATGAGCAGCGTCGGCACCCAGTTGGCAAAGCCGTAGTAGCCGATGGCCTGGCAGAAGTTGAAGACGATCAGCATGATCAGGCGCGAGCGATACGGCGGGCGCCACAGTTCCGCCAGCGATGCGCGGCGGTGCGGCGGCTGCACGACGGCCTGCAGCGGCGGTGGCAGGGCTTTGCCGGATTCGCGCTCGGCGGCGGCTTCCATCTGGCGGACAACGGCATCTGCCTGGTCGATATGGCCATGCATGGCCAGCCAGCGCGGGCTTTCCGGTACGGCGCGGCGGATGAACCACACCAGCACCGCGCCGGCAGAGCCCAACAGCACCACCCAGCGCCAGCCTTCGAACCCCAGCAGGGTGGTCGGCACGAGCCAGTACGACAGAATGGCCGCAGCGGGTGCGGCGGCAAACATCACCATCTGATTGAACGCCATGGCGCGGCCGCGCATATGCTGCGGCACGAGTTCGGTGACGTAGCTGTCGATGGTCACGATCTCGATGCCGACACCGATGCCGGTGAGAAAGCGCCAGATCAGCAGGCCTTCGGGGCTCTGCTGGCACGCCATGATGGCGGAGCCGATCGAGTACCACAGCAGCGATACCGTGAACACCGTGCGGCGCCCATAACGATCGGGCAGCCAGCCCAAGCCGAACGTGCCGACGAAGAGCCCCGCAAACGTGGCGGCAATGAAGCCGGCCATGCCATGCAGCCCGAAGAACGCATCGGTCGTGGCCTTGAGCAGCCCGCTTTTTTCCATACCGGGCGCGATATAGCCCGTGAAGATCAGATCGTAGACCTCGAAAAAGCCACCCAGCGAAATCAACAGCACTAGCATCCACAGGTTACGTGTGATGGGCAAGCGGTCCATCCGCGAAGAAAGCGCCGTGGCGGCGCGGGTGTCTTGATCGTGTTGAGCGATGGCAGTCGGCGCGCTGTCCGCTGTCAGGGGGCGTTGCAT > 950 Rpic12D_2147 PFAM:_major_facilitator_superfamily_MFS_1;_general_substrate_transporter;_KEGG:_bch:Bcen2424_5285_major_facilitator_transporter major_facilitator_superfamily_protein YP_002982093.1 11 MQTAQSTAQPRRAAMASFIGTTIEWYDFYSYATAAALVFGPLFFPGENRLLGLLASFGSFAIGFLARPIGGVLFGRIGDKLGRKRALMGTLSLMAIATVLIGCLPTYAQAGWIAPVALVALRVLQGIAVGGEWGGAVLLAGEHAPKGRRTFFASFAQLGSAGGLILSMLAFSAVSRLEPEAFLAWGWRLPFLASAVLLAVGFVIRMSVNESPEFEAMQASGDVAKQPLAEALKAWPLIALAIGANVYGIAGVYFSNIFMISYATQYLQLDRAMILDCMFWVAVLQFFVQLGAATLADRFGTRRMLVILAAFAVVVPFIMLPLVRMGEAHTVFAGVAIATLAESGYYAIIAGFVSGMFAARIRYTAISLSYQVCGAFAGGLTPLLATVLADRFFPLWWPMAIFYAGFAALSLICVLSIGRSRTAAEASALDARAA beta_subgroup Ralstonia_pickettii_12D Ralstonia_pickettii_12D NC_012856 2283468..2284772 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Sims,D.,_Meincke,L.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ovchinnikova,G.,_Marsh,T._and_Richardson,P. NA 0:1305 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001644.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4003027Source_DNA_and_organism_available_from_Terry_Marsh_(marsht@msu.edu)Contacts:_Terry_Marsh_(marsht@msu.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Ralstonia_pickettii_12DGOLD_Stamp_ID_::_Gi01352Greengenes_ID_::_243860Isolation_Site_::_Copper-contaminated_sediment_from_a_lake_in_MichiganIsolation_Country_::_USAOxygen_Requirement_::_AerobeCell_Shape_::_Rod-shapedMotility_::_MotileTemperature_Range_::_MesophileGram_Staining_::_gram-Biotic_Relationship_::_Free_livingDiseases_::_Nosocomial_infectionHabitat_::_Fresh_water,_Host,_SoilPhenotypes_::_PathogenEnergy_Source_::_Heterotroph##Metadata-END##COMPLETENESS:_full_length. NA 14-NOV-2011 Ralstonia_pickettii_12D_chromosome_chromosome_1,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ralstonia_pickettii_C6BKV2_RALP1.gb Ralstonia_Yabuuchi_et_al._1996 241661625 Unpublished NA NC_012856 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1305 1 genomic_DNA NA 12D NA Ralstonia_pickettii_(Ralston_et_al._1973)_Yabuuchi_et_al._1996 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 428406 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Ralstonia Complete_sequence_chromosome_1_of_Ralstonia_pickettii_12D NA NC_012856.1 TCAGGCGGCGCGTGCGTCCAGCGCCGACGCCTCTGCGGCCGTCCTGCTCCGGCCGATCGAAAGCACACAGATCAGCGACAGCGCCGCAAAACCGGCATAGAAGATCGCCATTGGCCACCACAGCGGGAAAAAACGATCAGCCAGCACCGTGGCAAGCAGCGGAGTCAGGCCACCCGCAAAGGCGCCGCACACCTGATACGACAACGAGATCGCCGTGTAGCGGATGCGTGCCGCGAACATGCCGCTGACAAAGCCCGCGATGATCGCGTAATAGCCGGACTCGGCCAGCGTTGCGATGGCCACGCCTGCAAACACGGTATGCGCCTCGCCCATGCGGACCAGCGGCAGCATGATGAACGGCACGACCACCGCGAAGGCCGCGAGGATGACCAGCATGCGGCGTGTTCCGAAACGGTCGGCCAGCGTGGCCGCACCAAGCTGCACGAAGAACTGCAGCACGGCGACCCAGAACATGCAGTCGAGAATCATCGCGCGATCAAGCTGCAGGTACTGCGTGGCATACGAAATCATGAAGATGTTGCTGAAGTACACGCCCGCGATGCCGTACACGTTGGCGCCGATGGCGAGCGCGATCAGCGGCCATGCCTTGAGCGCCTCCGCCAGCGGCTGCTTCGCCACGTCGCCGGACGCCTGCATCGCCTCGAACTCCGGCGATTCATTGACCGACATGCGGATGACAAAGCCCACGGCCAGCAGCACGGCACTCGCCAGGAACGGCAAGCGCCAGCCCCACGCCAGGAAGGCCTCCGGCTCAAGCCGGCTGACGGCGGAAAAGGCCAGCATCGACAGGATCAGGCCACCGGCGCTGCCAAGCTGCGCGAACGACGCGAAGAACGTGCGCCGGCCCTTCGGCGCGTGTTCGCCGGCCAGCAACACCGCACCGCCCCACTCGCCGCCCACGGCGATGCCTTGCAACACGCGCAACGCCACCAGCGCGACCGGCGCAATCCAGCCGGCCTGCGCATAGGTGGGCAGACAGCCGATCAGCACCGTGGCAATGGCCATGAGGCTGAGCGTTCCCATCAGCGCCCGCTTGCGGCCGAGCTTGTCGCCGATGCGGCCGAACAGCACGCCGCCGATGGGCCGCGCGAGAAATCCGATGGCGAACGACCCGAACGAAGCCAGCAGCCCCAGCAAGCGGTTCTCTCCCGGGAAGAACAGCGGCCCGAAGACAAGTGCCGCCGCCGTGGCGTAGCTGTAGAAGTCGTACCACTCGATCGTGGTGCCGATGAACGATGCCATCGCCGCACGGCGCGGCTGGGCCGTCGATTGCGCTGTTTGCAT > 951 RSIPO_02813 NA transporter_protein YP_002260993.1 11 MHTHNPNESKARAIFRVVSGNFLEMFDFMVYGYYAKAIADTFFPAGNEFLSLMLSLMTFGAGFLMRPLGALILGAYIDRHGRRAGLILTLMLMACGTLLIAVVPGYNTIGLAAPLLVLIGRLLQGFSAGGEPGGVSVYLSEIATPGRKGFFVSWQSGSQQVAVMFASLLGVLLSSVLSPKSMGEWGWRVPFLIGCMIVPFLFFIRRSLRETEEFEQRKHRPTLSEIFRSMGENWRLAGAGTLLAVMTTVAFYLITAYTPTFGRNVLHMSEFDSMIVTLCVGASNLFWLPVMGSLSDRIGRRPPLLVFSAVTLLTAYPAMMWLIGAPSFGRLLAVELWLSFLYAGYNGAMIVTLTEIMPPALRTTGFSLAYSLATAIFGGFTPAIATGLIHATGNKAMPGLWLSFAAICGLVATLTVVKTQPRAATLDPLLEP beta_subgroup Ralstonia_solanacearum_IPO1609 Ralstonia_solanacearum_IPO1609 NW_002196569 3026860..3028158 Boucher,C.,_Carrere,S.,_Dossat,C.,_Elbaz,M.,_Genin,S.,_Gouzy,J.,_Prior,P.,_Segurens,B._and_Wincker,P. NA 0:1299 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CU914168. NA 16-DEC-2010 Ralstonia_solanacearum_IPO1609. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ralstonia_solanacearum_B5SJN3_RALSO.gb Ralstonia_Yabuuchi_et_al._1996 207741818 Unpublished NA NW_002196569 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1299 NA genomic_DNA NA 1609 NA Ralstonia_solanacearum_(Smith_1896)_Yabuuchi_et_al._1996 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 564066 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Ralstonia Genomic_draft_of_R._solanacearum_strain_IPO1609,_a_phylotype_IIB1/biovar_2/race_3_strain_isolated_from_potato_in_Europe NA NW_002196569.1 ATGCATACCCACAACCCCAACGAATCCAAAGCCCGCGCCATCTTCCGGGTCGTCAGCGGCAACTTCCTAGAGATGTTCGACTTCATGGTCTACGGCTACTACGCCAAGGCCATCGCGGACACCTTCTTCCCCGCCGGCAACGAGTTCCTCTCGCTGATGCTGTCGCTGATGACCTTCGGCGCCGGCTTCCTGATGCGGCCGCTGGGCGCGCTGATCCTGGGCGCCTACATCGATCGTCACGGCCGCCGCGCCGGCCTGATCCTGACGCTGATGCTGATGGCCTGCGGCACGCTGCTGATCGCGGTGGTGCCTGGCTACAACACCATCGGCCTGGCGGCGCCGCTGCTGGTGCTGATCGGCCGCCTGCTGCAAGGCTTCTCGGCCGGCGGTGAGCCGGGCGGGGTGTCGGTCTACCTGTCGGAAATCGCGACGCCGGGCCGCAAGGGCTTCTTCGTGAGCTGGCAGTCGGGCAGCCAGCAGGTGGCGGTGATGTTCGCCTCGCTGCTGGGCGTGCTGCTGTCGTCGGTGCTGTCGCCCAAGTCAATGGGCGAATGGGGCTGGCGCGTGCCGTTCCTGATCGGCTGCATGATCGTGCCGTTCCTGTTCTTCATCCGCCGCTCGCTGCGCGAGACCGAGGAGTTCGAGCAGCGCAAGCATCGCCCGACCCTGAGCGAGATCTTCCGCTCGATGGGCGAGAACTGGCGCCTGGCCGGTGCGGGCACGCTGCTGGCCGTGATGACCACGGTGGCGTTCTACCTGATCACCGCGTACACGCCGACCTTCGGCCGGAACGTGCTGCACATGTCGGAATTCGACAGCATGATCGTCACGCTGTGCGTGGGGGCCTCCAACCTCTTCTGGCTGCCGGTGATGGGCTCGCTGTCCGACCGCATCGGCCGCCGTCCCCCGCTGCTCGTCTTCAGCGCGGTGACGCTGCTGACCGCCTACCCGGCCATGATGTGGCTGATCGGCGCGCCGTCGTTCGGCCGCCTGCTGGCCGTGGAGCTGTGGCTGTCGTTCCTGTACGCCGGCTACAACGGCGCCATGATCGTGACGCTGACCGAAATCATGCCGCCGGCACTGCGCACCACGGGCTTCTCGCTGGCCTACAGCCTGGCGACCGCCATCTTCGGCGGCTTCACCCCGGCCATCGCCACCGGGCTGATCCACGCCACCGGCAACAAGGCAATGCCGGGCCTGTGGCTGTCCTTCGCCGCCATCTGCGGCCTGGTCGCCACGCTGACCGTGGTCAAGACGCAGCCCCGTGCCGCCACGCTGGATCCGCTGCTCGAGCCGTAA > 952 RCFBP_10388 Evidence_2a_:_Function_of_homologous_gene_experimentally_demonstrated_in_an_other_organism;_PubMedId_:_1718953,_2999087,_2999088;_Product_type_t_:_transporter citrate_transporter YP_003744342.1 11 MHTHNPNESKARSIFRVVSGNFLEMYDFMVYGYYAKAIADTFFPADNEFLSLMLSLVTFGVGFLMRPLGALILGAYIDRHGRRAGLIVTLGLMACGTLLIALVPGYNTIGLAAPLLVLIGRLLQGFSAGVELGGVSVYLAEISTPGRKGFFVSWQSASQQVAVMFAALLGVLLSFQLSPKEMGEWGWRVPFLVGCLIVPFLFIIRRSLQETEEFKQRKHRPALGEIFRSMGENWRLVGAGTLLVVMTTVSFYLITAYTPTFGKSVLHLSNLDSLIVTLCVGASNFFWLPVMGSVSDRIGRRPLLITFTALTLLTAYPAMQWLIAEPSFGRLLAVELWLSFLYGSYNGAMVVTLTEIMPPAVRTTGFSLAYSLATAIFGGFTPAIATWLIHATGNKAMPGLWLSFAAICGLVATLIVVKPAGRHVHTVTA beta_subgroup Ralstonia_solanacearum_CFBP2957 Ralstonia_solanacearum_CFBP2957 NC_014307 402348..403637 Remenant,B.,_Coupat-Goutaland,B.,_Guidot,A.,_Cellier,G.,_Wicker,E.,_Allen,C.,_Fegan,M.,_Pruvost,O.,_Elbaz,M.,_Calteau,A.,_Salvignol,G.,_Mornico,D.,_Mangenot,S.,_Barbe,V.,_Medigue,C._and_Prior,P. NA 0:1290 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FP885897.Annotation_results_relative_to_BLAST_similarities,_COGassignations,_enzymatic_function_prediction_(PRIAM_software),_TMHMMand_SignalP_predictions,_and_synteny_conservation_(Syntonizersoftware)_are_available_in_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage.COMPLETENESS:_full_length. NA 27-OCT-2011 Ralstonia_solanacearum_CFBP2957_chromosome,_complete_genome. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ralstonia_solanacearum_D8NM78_RALSO.gb Ralstonia_Yabuuchi_et_al._1996 300702374 BMC_Genomics_11,_379_(2010) NA NC_014307 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 20550686 1290 NA genomic_DNA NA CFBP2957 NA Ralstonia_solanacearum_(Smith_1896)_Yabuuchi_et_al._1996 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 859656 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Ralstonia Genomes_of_three_tomato_pathogens_within_the_Ralstonia_solanacearum_species_complex_reveal_significant_evolutionary_divergence NA NC_014307.1 TCAGGCGGTCACGGTGTGCACGTGGCGGCCTGCCGGCTTGACCACGATCAGCGTGGCGACCAGGCCGCAGATGGCGGCGAAGGACAGCCACAGGCCCGGCATCGCCTTGTTGCCGGTGGCGTGGATCAGCCAGGTGGCGATGGCCGGCGTGAAGCCGCCGAAGATCGCGGTTGCCAGGCTGTAGGCCAGCGAGAAGCCCGTGGTGCGTACCGCCGGCGGCATGATCTCGGTGAGCGTCACCACCATCGCGCCGTTATAGCTGCCGTACAGGAACGACAGCCACAGCTCCACGGCCAGCAGGCGGCCGAACGACGGCTCGGCGATCAGCCACTGCATGGCCGGATAGGCCGTCAGCAGCGTCAGCGCGGTGAAGGTGATCAGCAGCGGGCGGCGGCCGATGCGGTCGGACACCGAGCCCATCACCGGCAGCCAGAAGAAATTGGAGGCGCCCACGCACAGCGTGACGATCAGGCTGTCGAGGTTCGACAGGTGCAGCACGCTCTTGCCGAAGGTCGGCGTGTAGGCCGTGATCAGGTAGAACGACACCGTGGTCATCACCACCAGCAGCGTGCCCGCGCCCACCAGGCGCCAGTTCTCGCCCATCGAGCGGAAGATCTCGCCCAGGGCCGGACGGTGCTTGCGCTGCTTGAACTCCTCCGTCTCCTGCAGCGAGCGGCGGATGATGAACAGGAACGGCACGATCAGGCAGCCGACCAGGAACGGCACGCGCCAGCCCCACTCACCCATTTCCTTGGGCGACAGCTGGAACGACAGCAGCACGCCCAGCAGCGCGGCGAACATCACCGCCACCTGCTGGCTGGCCGATTGCCAGCTCACGAAGAAGCCCTTGCGGCCCGGCGTCGAGATTTCCGCCAGGTAGACCGACACCCCGCCCAGCTCCACGCCGGCCGAGAAGCCTTGCAGCAGGCGGCCGATCAGCACCAGCAGCGGCGCCGCCAGGCCGATGGTGTTGTAGCCCGGCACCAGCGCGATCAGCAGCGTGCCGCAGGCCATCAGCCCCAGCGTCACGATCAGGCCGGCGCGGCGGCCGTGGCGGTCGATGTAGGCGCCCAGGATCAGCGCGCCCAGCGGCCGCATCAGGAAGCCGACGCCGAAGGTCACCAGCGACAGCATCAGCGAGAGGAACTCGTTGTCGGCCGGGAAGAAGGTGTCCGCGATGGCCTTGGCGTAGTAGCCGTAGACCATGAAGTCGTACATCTCCAGGAAGTTACCGCTGACCACCCGGAAGATGGAACGGGCCTTGGATTCGTTGGGGTTGTGGGTATGCAT > 953 RCFBP_mp10060 Evidence_2a_:_Function_of_homologous_gene_experimentally_demonstrated_in_an_other_organism;_PubMedId_:_2053984,_8419306;_Product_type_t_:_transporter alpha-ketoglutarate_permease_(MFS_family) YP_003747280.1 11 MSTPAAQASQAAMAPHDTRRRIFAIVGASSGNLVEWFDFYVYAFCSLYFAPAFFPSGNTTTQLMNTAGVFAAGFLMRPIGGWLFGRIADQHGRRIAMMISVLMMCGGSLVIAVLPTYAQIGALAPFLLLVARLFQGLSVGGEYGTSATYMSEVALKGRRGFFASFQYVTLIGGQLCALLVLVVLQQILSTAELKAWGWRIPFVAGALSALISLYLRRSLDETQSTASREAKHAGTIRGAWQHKGAFLRVIGFTAGGSLIFYTFTTYMQKYLVNTAGMNTKTASNVMTAALFVYMVLQPVFGALSDRIGRRMSMILFGVGTVLFTVPLMRALASVTSPYAAFGLVIAALAIISFYTSISGLIKAEMFPPEVRAMGVGLSYAIANAVFGGSAEYIALWFKSAGSESTFYWYVTALCAVSLIVSYTMPDPSKEGYLRNEP beta_subgroup Ralstonia_solanacearum_CFBP2957 Ralstonia_solanacearum_CFBP2957 NC_014309 58207..59520 Remenant,B.,_Coupat-Goutaland,B.,_Guidot,A.,_cellier,G.,_Wicker,E.,_Allen,C.,_Fegan,M.,_Pruvost,O.,_Elbaz,M.,_Calteau,A.,_Salvignol,G.,_Mornico,D.,_Mangenot,S.,_Barbe,V.,_Medigue,C._and_Prior,P. NA 0:1314 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FP885907.Annotation_results_relative_to_BLAST_similarities,_COGassignations,_enzymatic_function_prediction_(PRIAM_software),_TMHMMand_SignalP_predictions,_and_synteny_conservation_(Syntonizersoftware)_are_available_in_the_MaGe_annotation_systemhttp://www.genoscope.cns.fr/agc/mage.COMPLETENESS:_full_length. NA 06-APR-2011 Ralstonia_solanacearum_CFBP2957_plasmid_RCFBPv3_mp,_complete_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ralstonia_solanacearum_D8P720_RALSO.gb Ralstonia_Yabuuchi_et_al._1996 300696564 BMC_Genomics_11,_379_(2010) NA NC_014309 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives 20550686 1314 NA genomic_DNA NA CFBP2957 NA Ralstonia_solanacearum_(Smith_1896)_Yabuuchi_et_al._1996 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 859656 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Ralstonia Genomes_of_three_tomato_pathogens_within_the_Ralstonia_solanacearum_species_complex_reveal_significant_evolutionary_divergence NA NC_014309.1 TCACGGCTCGTTCCGCAAATACCCCTCCTTGCTCGGATCTGGCATCGTGTACGACACGATCAGCGACACGGCGCACAGTGCGGTCACGTACCAGTAGAACGTCGATTCGCTGCCGGCCGATTTGAACCACAGCGCGATGTACTCCGCCGATCCGCCGAACACCGCGTTGGCGATCGCGTACGACAGGCCCACCCCCATCGCGCGCACTTCCGGCGGGAACATCTCGGCCTTGATCAGCCCGCTGATCGACGTATAGAAGCTGATGATCGCCAGCGCTGCGATGACGAGGCCGAACGCCGCGTACGGGCTCGTCACGCTGGCCAGCGCACGCATCAGCGGTACCGTGAACAGCACCGTGCCCACCCCGAACAGGATCATCGACATGCGGCGGCCGATGCGGTCGGACAGCGCGCCGAACACCGGCTGCAGCACCATGTAGACGAACAGCGCCGCCGTCATCACGTTGGAGGCGGTCTTGGTGTTCATCCCGGCGGTGTTGACCAGGTACTTCTGCATGTACGTGGTGAACGTGTAGAAGATCAGCGAGCCGCCGGCGGTGAAGCCGATCACCCGCAGGAAGGCACCCTTGTGCTGCCATGCGCCGCGGATCGTGCCGGCGTGCTTGGCTTCGCGCGATGCGGTGCTCTGGGTCTCGTCGAGCGAGCGGCGCAGATAGAGCGAAATCAGCGCCGACAGCGCGCCCGCCACGAACGGAATGCGCCAGCCCCAGGCCTTGAGCTCCGCGGTCGACAGGATCTGCTGCAGCACCACCAGCACCAGCAGCGCGCACAGCTGGCCACCGATCAGCGTGACGTACTGGAACGATGCGAAGAAGCCGCGGCGCCCCTTGAGCGCCACCTCGCTCATATAGGTGGCGCTGGTACCGTACTCGCCGCCGACCGACAGCCCCTGGAACAACCGCGCCACCAGCAGCAGGAACGGCGCCAGCGCCCCGATCTGCGCATAGGTGGGCAGCACCGCGATGACCAGCGAGCCGCCGCACATCATCAGCACCGAGATCATCATGGCGATGCGGCGGCCGTGCTGGTCGGCAATGCGGCCGAACAGCCAGCCGCCGATCGGCCGCATCAGGAAGCCCGCCGCGAACACCCCGGCGGTGTTCATCAGCTGCGTGGTCGTGTTGCCGCTGGGGAAGAACGCCGGCGCGAAGTACAGCGAGCAGAACGCGTAGACGTAGAAATCGAACCACTCGACAAGGTTGCCCGACGACGCGCCGACGATCGCGAAGATGCGGCGCCGGGTGTCATGCGGGGCCATCGCGGCTTGGGAAGCTTGGGCGGCTGGGGTGCTCAT > 954 HMPREF1004_03387 NA major_facilitator_superfamily_(MFS)_aromatic_acid/H+_symporter EFP64767.1 11 METQQAVAAGKPWHADLTPTHWRVLTGSFLGWIFDGYEAFALVVVLFPMLHSLLTPAQLATPALYAGIVIGVTLLGWGIGGLVGGVMADYVGRKRMMLWSIFLYALFSGLTTFSQTFVQLCALRFITGLAMGSEWSTGISLLAETWPEKARAKGAGFLQSGFGWGTLIAALIWFGLSSSLPMGQETWRLMFALGALPAFFVLYIRRGVEESEKWKQAVREKRWSATGAAGKGGSDKRPFTLSQLFREPEARRRTFVTLLLSVVTTVGWWAISSWLPTFTIGLAKEQGLANPAGWGSKITILYTVGAIVAYMAAGFIVDAIGRRRFLFLTFLGSLATTYVTYAMTTSVESMSVVAPINGFFTLGCAYVWMAIYPAELFSSTVRSTACSFVFNAARLIAWVFPIIAGSLIHSFGGVANAALALGSVYVLGLVLPWFLPETQGEGLPH beta_subgroup Ralstonia_sp._5_7_47FAA Ralstonia_sp._5_7_47FAA ACUF01000048 79295..80632 Ward,D.,_Earl,A.,_Feldgarden,M.,_Young,S.K.,_Pearson,M.,_Zeng,Q.,_Alvarado,L.,_Berlin,A.,_Bochicchio,J.,_Chapman,S.B.,_Chen,Z.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Howarth,C.,_Jen,D.,_Larson,L.,_Mehta,T.,_Neiman,D.,_Park,D.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Allen-Vercoe,E.,_Strauss,J.,_Daigneault,M.,_Haas,B.,_Nusbaum,C._and_Birren,B. NA 0:1338 This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC.Source_DNA_provided_by_Daigneault,_M.,_Strauss,_J.C.,_andAllen-Vercoe,_E._(Molecular_and_Cellular_Biology,_University_ofGuelph,_Guelph,_Ontario,_N1G_2W1,_Canada).Bacteria_provided_by_Daigneault,_M.,_Strauss,_J.C.,_andAllen-Vercoe,_E._(Molecular_and_Cellular_Biology,_University_ofGuelph,_Guelph,_Ontario,_N1G_2W1,_Canada).Please_be_aware_that_the_annotation_is_done_automatically_withlittle_or_no_manual_curation.Gene_Calling_Method:_GeneMark;_Glimmer;_Metagene;_PFAM;_Blast_tonon-redundant_protein_database;_Manual_curation.##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_v._2.1-PreRelease-4/28/2009Genome_Coverage_::_16.43xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 18-OCT-2010 Ralstonia_sp._5_7_47FAA_cont1.48,_whole_genome_shotgun_sequence. NA Ralstoniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ralstonia_sp_E2T1X4_9RALS.gb Ralstonia_Yabuuchi_et_al._1996 308919028 Unpublished NA ACUF01000048 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1338 NA genomic_DNA NA 5_7_47FAA NA Ralstonia_sp._5_7_47FAA NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 658664 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Burkholderiaceae,_Ralstonia The_Genome_Sequence_of_Ralstonia_sp._strain_5_7_47FAA NA ACUF01000048.1 TTAGTGTGGTAGACCTTCCCCCTGCGTTTCCGGCAGGAACCACGGCAATACAAGCCCGAGGACGTAGACCGAGCCAAGCGCCAGTGCCGCATTGGCGACGCCACCGAACGAGTGGATCAGCGAGCCGGCGATGATCGGAAACACCCAGGCGATCAGGCGCGCAGCATTGAAGACGAAACTGCACGCCGTCGAGCGTACGGTCGAGCTGAACAGCTCTGCCGGATAGATCGCCATCCACACATAGGCGCAGCCCAGCGTGAAGAAGCCGTTGATGGGCGCAACGACGGACATCGATTCAACCGAGGTCGTCATCGCGTAGGTCACGTAGGTCGTCGCCAGTGAGCCCAGGAACGTCAGGAACAGGAAGCGGCGGCGGCCAATGGCGTCAACGATGAAGCCGGCGGCCATATAGGCAACAATGGCGCCAACCGTGTAAAGAATCGTGATCTTCGAGCCCCAGCCGGCCGGGTTGGCCAGACCTTGTTCCTTGGCGAGTCCGATGGTGAAGGTCGGCAGCCAGCTCGAGATCGCCCACCAGCCGACGGTGGTGACCACCGAAAGCAACAGCGTGACGAACGTACGGCGACGAGCCTCCGGTTCGCGGAACAACTGGGACAGCGTGAAGGGCCGCTTGTCGCTGCCGCCCTTGCCTGCCGCGCCGGTGGCGCTCCAGCGCTTTTCACGCACGGCCTGCTTCCATTTTTCCGACTCCTCGACACCGCGGCGGATGTACAGCACGAAGAACGCGGGCAGTGCGCCGAGGGCAAACATCAGCCGCCAGGTTTCCTGGCCCATCGGGAGCGACGACGACAGACCAAACCAGATCAGCGCAGCAATCAGCGTGCCCCAGCCAAAACCGGATTGCAGGAAGCCGGCGCCCTTGGCGCGCGCCTTTTCCGGCCAGGTTTCGGCAAGCAGGGAGATGCCCGTGCTCCATTCGCTGCCCATCGCCAGACCGGTGATGAAGCGCAGCGCGCACAACTGCACGAACGTCTGCGAGAACGTGGTCAGGCCCGAGAACAGCGCGTACAGAAAGATCGACCACAGCATCATCCGCTTGCGCCCGACATAGTCCGCCATCACGCCGCCCACCAGGCCGCCGATCCCCCAGCCGAGCAGAGTCACGCCGATGACGATGCCGGCGTAGAGGGCCGGCGTCGCCAGCTGTGCGGGTGTGAGCAGCGAATGCAGCATCGGGAATAGCACGACGACGAGCGCGAAGGCTTCGTAGCCGTCGAAAATCCAGCCCAGAAAGCTGCCGGTCAGCACGCGCCAGTGCGTGGGGGTCAGGTCTGCATGCCAGGGCTTGCCCGCAGCGACCGCTTGTTGGGTTTCCAT > 955 SMc04407 NA transport_transmembrane_protein NP_387418.1 11 MANVVTAGGTKAGPMTGEEKKVIFASSLGTVFEWYDFYLYGSLAVYIGATFFSQYPETTRNIFALLAFAAGFLVRPFGALVFGRLGDLVGRKYTFLVTILIMGVSTFLVGVLPGAASIGIAAPIILIALRLLQGLALGGEYGGAATYVAEHAPHGRRGYFTSWIQTTATLGLFLSLVVILLVQYMLGKEAFAEWGWRIPFLLSFVLLGVSVWIRLKMNESPAFKKMKEEGKGSKAPLTEAFGQWRNAKIAVLALFGAVVGQAVVWYSGQFYALFFLQSILKVDGQSANLMVAASLLLGTGFFVFFGWLSDKIGRKPIIMAGLLLAMLTYFPLFKALTWAGNPALAEAQQSVRATVTAAPGDCKFQFNPTGTAKFTTSCDIATAFLTKNSVPYDVVTTAAAGTPATVKIGETTITSYDAIAAGDRAKAEEAAFGKQINMALQASGYPLVRGAAKVPESKLDAFVAANPELGLDAAAVRAGEKTMVPADKLVADKLLTQEEVGSATEMAVYNIDKGGAFTMVADPARVNWTVIIAVLTVLVIYVTMVYGPIAALLVELFPTRIRYTGMSLPYHIGNGWFGGLLPATAFAMSAAKGDIYYGLWYPIVFAGITLVIGLLFLPETKDRDIHTME alpha_subgroup Sinorhizobium_meliloti_1021 Sinorhizobium_meliloti_1021 NC_003047 3613831..3615720 Capela,D.,_Barloy-Hubler,F.,_Gouzy,J.,_Bothe,G.,_Ampe,F.,_Batut,J.,_Boistard,P.,_Becker,A.,_Boutry,M.,_Cadieu,E.,_Dreano,S.,_Gloux,S.,_Godrie,T.,_Goffeau,A.,_Kahn,D.,_Kiss,E.,_Lelaure,V.,_Masuy,D.,_Pohl,T.,_Portetelle,D.,_Puehler,A.,_Purnelle,B.,_Ramsperger,U.,_Renard,C.,_Thebault,P.,_Vandenbol,M.,_Weidner,S._and_Galibert,F. NA 0:1890 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AL591688.COMPLETENESS:_full_length. NA 28-OCT-2011 Sinorhizobium_meliloti_1021,_complete_genome. NA Rhizobiaceae_Conn_1938 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhizobium_meliloti_Q92KY6_RHIME.gb Sinorhizobium_Chen_et_al._1988_emend._De_Lajudie_et_al._1994 15963753 Proc._Natl._Acad._Sci._U.S.A._98_(17),_9877-9882_(2001) NA NC_003047 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives 11481430 1890 NA genomic_DNA NA 1021 NA Sinorhizobium_meliloti_(Dangeard_1926)_De_Lajudie_et_al._1994 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 266834 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Rhizobiaceae,_Sinorhizobium/Ensifer_group,_Sinorhizobium Analysis_of_the_chromosome_sequence_of_the_legume_symbiont_Sinorhizobium_meliloti_strain_1021 NA NC_003047.1 TCACTCCATCGTGTGGATATCCCGGTCCTTCGTCTCGGGCAGGAACAGAAGACCGATCACCAGGGTGATGCCCGCGAAAACGATCGGGTACCAGAGGCCGTAGTAGATATCGCCCTTTGCCGCGCTCATCGCGAAGGCCGTTGCCGGAAGCAGCCCGCCGAACCAGCCATTGCCGATATGGTAGGGCAGCGACATGCCGGTATAGCGGATGCGGGTCGGGAAGAGTTCGACGAGCAGTGCCGCGATAGGGCCGTAGACCATCGTCACATAGATGACGAGCACGGTCAGCACGGCAATGATCACCGTCCAGTTGACGCGGGCCGGGTCGGCCACCATCGTGAAGGCGCCGCCCTTGTCGATGTTATAGACCGCCATTTCGGTGGCGCTGCCGACTTCTTCCTGGGTGAGCAGCTTGTCGGCGACGAGCTTGTCGGCCGGCACCATGGTCTTTTCGCCGGCGCGCACGGCAGCGGCGTCGAGGCCAAGTTCCGGATTGGCAGCGACGAAGGCGTCGAGCTTCGATTCCGGAACCTTGGCAGCACCGCGCACCAGCGGATAGCCCGAGGCCTGCAGCGCCATGTTGATCTGCTTGCCGAAGGCCGCTTCCTCGGCCTTCGCCCTGTCGCCGGCCGCAATAGCGTCATAGCTGGTGATCGTCGTTTCGCCGATCTTCACCGTCGCCGGCGTACCCGCAGCCGCCGTGGTCACGACGTCATAGGGAACCGAGTTCTTGGTCAGGAAGGCGGTGGCGATGTCGCACGACGTGGTGAACTTCGCAGTGCCCGTCGGGTTGAACTGGAACTTACAGTCGCCCGGAGCCGCGGTGACGGTGGCGCGAACGCTCTGCTGCGCTTCCGCAAGCGCGGGGTTGCCGGCCCAGGTCAGCGCCTTGAACAATGGGAAGTAGGTGAGCATGGCAAGCAGGAGGCCCGCCATGATGATCGGCTTGCGGCCGATCTTGTCCGACAGCCAGCCGAAGAAGACGAAAAAGCCCGTGCCGAGAAGGAGCGAGGCGGCAACCATCAGGTTTGCCGACTGGCCGTCGACCTTCAGGATGCTCTGCAGGAAGAACAGCGCGTAGAACTGGCCGGAATACCAGACCACGGCCTGGCCGACGACCGCGCCGAAGAGCGCCAGAACGGCAATCTTGGCGTTGCGCCACTGGCCGAAAGCCTCCGTCAGCGGCGCTTTCGAACCCTTGCCCTCTTCCTTCATCTTCTTGAAGGCAGGAGACTCGTTCATCTTCAGGCGGATCCAGACGGAGACGCCGAGCAGTACGAAGGAGAGCAGGAAGGGTATGCGCCAGCCCCACTCGGCAAAAGCTTCCTTACCCAGCATGTACTGGACCAGAAGGATAACCACCAGCGAGAGGAAGAGACCAAGCGTCGCCGTCGTCTGGATCCACGAGGTGAAATAGCCGCGGCGACCATGCGGCGCATGCTCTGCCACATAAGTCGCGGCACCGCCGTATTCGCCGCCGAGCGCAAGGCCCTGCAGGAGGCGCAGCGCGATCAGGATGATCGGAGCCGCAATGCCGATCGAGGCGGCACCGGGCAGGACGCCGACGAGGAAGGTCGACACGCCCATGATCAGGATGGTGACGAGGAATGTGTATTTGCGGCCGACGAGGTCTCCCAGGCGGCCGAAAACCAGCGCGCCGAACGGCCGGACAAGGAAGCCGGCGGCGAAGGCGAGCAGCGCAAAGATGTTGCGCGTGGTCTCGGGATACTGGCTGAAGAAGGTTGCACCGATATAAACGGCAAGCGAACCGTAGAGATAGAAATCATACCATTCGAAGACGGTACCGAGCGACGAGGCGAAGATGACCTTCTTCTCCTCGCCGGTCATCGGGCCGGCTTTTGTGCCGCCCGCTGTCACGACGTTTGCCAT > 956 NGR_c33200 NA shikimate_transporter YP_002827803.1 11 MANVATADGIKKAGPMTAEEKKVIFASSLGTVFEWYDFYLYGSLAVYIGATFFSQYPETTRNIFALLAFAAGFLVRPFGALVFGRIGDLVGRKYTFLVTILIMGLSTFLVGVLPGAASIGIAAPIILIVLRLLQGLALGGEYGGAATYVAEHAPHGRRGYFTSWIQTTATLGLFLSLIVILLVQFMLGKEAFAAWGWRIPFLLSCVLLGVSVWIRLKMNESPAFKKMKEEGKGSKAPLTEAFGQWRNAKVALLALFGAVVGQAVVWYSGQFYALFFLQSILKIDGQSANLMVAASLVLGTGFFVFFGWLSDKIGRKPIIMAGLLLAMLTYFPLFKTLTWAGNPALAEAQQSVRATVAAAPGDCKFQFNPTGTAKFTTSCDIATAFLTKNSVPYDVVTTAAAGTPATVKVGETTITSYDAIAAGDKAKAEDAAFSKQVNMALQASGYPLVRGAAKVPESKLDGFVAGNPELALDAAAIRAGEKTMVPADKLVADKLLTKEEVGSATEMAVYSIDKGGAFTMVADPARVNWTVIIAVLTVLVIYVTMVYGPIAALLVELFPTRIRYTGMSLPYHIGNGWFGGLLPATAFAMSAAKGDIYYGLWYPIVFAGLTLVIGLLFLPETKDRDIHQMD alpha_subgroup Sinorhizobium_fredii_NGR234 Sinorhizobium_fredii_NGR234 NC_012587 3497978..3499870 Schmeisser,C.,_Liesegang,H.,_Krysciak,D.,_Bakkou,N.,_Le_Quere,A.,_Wollherr,A.,_Heinemeyer,I.,_Morgenstern,B.,_Pommerening-Roser,A.,_Flores,M.,_Palacios,R.,_Brenner,S.,_Gottschalk,G.,_Schmitz,R.A.,_Broughton,W.J.,_Perret,X.,_Strittmatter,A.W._and_Streit,W.R. NA 0:1893 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001389.Rhizobium_sp._NGR234_is_available_from_Prof._Wolfgang_Streit,Biozentrum_Klein_Flottbek,Mikrobiologie,_Ohnhorststr._18_D-22609Hamburg,_wolfgang.streit@uni-hamburg.de.COMPLETENESS:_full_length. NA 19-OCT-2011 Sinorhizobium_fredii_NGR234_chromosome,_complete_genome. NA Rhizobiaceae_Conn_1938 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhizobium_sp_C3MAQ7_RHISN.gb Sinorhizobium_Chen_et_al._1988_emend._De_Lajudie_et_al._1994 227820587 Appl._Environ._Microbiol._75_(12),_4035-4045_(2009) NA NC_012587 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives 19376903 1893 NA genomic_DNA NA NGR234 NA Sinorhizobium_fredii_(Scholla_and_Elkan_1984)_Chen_et_al._1988_emend._De_Lajudie_et_al._1994 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 394 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Rhizobiaceae,_Sinorhizobium/Ensifer_group,_Sinorhizobium Rhizobium_sp._strain_NGR234_possesses_a_remarkable_number_of_secretion_systems NA NC_012587.1 TCAGTCCATCTGATGGATGTCGCGGTCCTTGGTTTCCGGCAGGAACAACAGGCCGATCACCAGCGTCAGGCCGGCGAAGACGATCGGGTACCAGAGACCATAGTAGATGTCGCCCTTGGCGGCGCTCATCGCGAAGGCCGTCGCCGGGAGCAGGCCGCCGAACCAGCCGTTGCCGATATGATAGGGCAGCGACATGCCGGTGTAGCGGATGCGCGTCGGGAAGAGCTCGACGAGCAGGGCAGCGATCGGGCCGTAGACCATCGTCACATAGATGACGAGAACCGTCAGAACCGCGATGATTACCGTCCAGTTGACGCGAGCCGGGTCGGCCACCATCGTGAAGGCGCCGCCCTTGTCGATCGAATAGACCGCCATTTCGGTTGCACTGCCGACTTCCTCCTTGGTGAGGAGCTTGTCGGCGACAAGCTTGTCGGCCGGAACCATGGTCTTTTCGCCGGCGCGGATAGCGGCCGCGTCGAGGGCCAGTTCCGGATTGCCGGCAACAAAGCCGTCGAGCTTGGACTCCGGCACCTTGGCCGCACCGCGCACCAGCGGGTAGCCCGAGGCCTGCAGCGCCATGTTGACCTGCTTGCTGAACGCGGCGTCCTCGGCCTTCGCCTTGTCGCCGGCGGCAATGGCGTCATAGCTGGTGATCGTCGTCTCGCCGACCTTCACCGTCGCCGGTGTCCCCGCGGCCGCCGTGGTCACCACGTCGTAGGGTACCGAGTTCTTGGTCAGGAAGGCCGTTGCGATGTCGCACGAAGTCGTGAACTTCGCCGTCCCGGTCGGGTTGAACTGGAATTTGCAGTCGCCGGGTGCGGCGGCGACGGTGGCGCGGACACTCTGCTGTGCCTCGGCCAAAGCCGGGTTGCCGGCCCAGGTCAAGGTCTTGAACAGCGGGAAGTAGGTCAGCATGGCGAGCAGCAGGCCGGCCATGATGATCGGCTTGCGACCGATCTTGTCGGAAAGCCAGCCGAAGAACACGAAGAAGCCGGTGCCGAGCACGAGCGAGGCGGCAACCATCAGGTTCGCCGACTGGCCGTCGATCTTCAGGATGCTCTGCAGGAAGAACAAGGCGTAGAACTGGCCCGAATACCAGACCACGGCCTGACCGACGACGGCACCGAAAAGCGCCAGCAGCGCGACCTTGGCATTCCGCCACTGGCCGAAGGCCTCCGTCAGCGGCGCCTTCGAACCCTTGCCCTCTTCCTTCATCTTCTTAAAGGCCGGCGATTCGTTCATCTTCAGCCGGATCCAGACGGAGACGCCGAGAAGCACGCAGGAGAGCAGGAAGGGTATGCGCCAGCCCCAGGCGGCGAAGGCCTCCTTGCCAAGCATGAACTGCACGAGCAGGATCACGATCAGTGAGAGGAACAGACCGAGCGTCGCCGTCGTCTGGATCCACGAGGTGAAGTAGCCGCGGCGGCCATGCGGCGCGTGTTCGGCGACATAGGTCGCGGCACCGCCATATTCACCGCCGAGCGCCAGGCCCTGCAGCAGGCGCAGGACGATCAGGATGATCGGCGCGGCGATGCCGATCGACGCAGCACCGGGCAGCACGCCGACCAGGAAGGTCGACAGACCCATGATCAGGATCGTGACGAGAAAGGTATATTTGCGGCCGACGAGGTCGCCGATGCGGCCAAAGACCAGCGCGCCGAACGGGCGTACCAGGAAGCCTGCGGCAAAGGCAAGCAGCGCGAAGATGTTGCGGGTCGTCTCCGGATACTGGCTGAAGAAGGTCGCGCCGATATAGACGGCGAGCGATCCGTAGAGATAGAAATCGTACCATTCGAAGACGGTACCGAGCGAGGAAGCGAAGATGACCTTCTTTTCCTCGGCGGTCATGGGACCGGCTTTTTTGATGCCGTCCGCTGTTGCGACATTTGCCAT > 957 HMPREF0724_12743 COG:_COG0477 MFS_family_major_facilitator_transporter EGD23659.1 11 MSKGVESAERGQDELSASPDDGTVAGVPRSRIVVASMVGTSIEFYDFYIYATAAVSVFPHLFFPKGNDTTALLASFATFGLAFVARPLGSILFGHFGDRIGRKATLVGSLLTMGIATFLIGLLPTYHAVGLWAPALLALMRFCQGLGLGGEWSGAALLATETAKSGKRAWAAMWPQLGAPIGFFFANGLFLLITLALGYTSSSNPDLDSAFLTWGWRIPFLLSALMVMIGLYVRLKLEETPVFARAVANGEKVKTPLKQVFKTSWRQLIIGTFVMLATYTLFYIMTTWVLSYGTGKTAADGGYGAGFQYRDFLVLQLVAVLFFAATIPVAGWLADRYGRRITLLVITAAMMVFGLTFGVLLAAEGMTDARMLVFLIIGMVLMGLTFGPMSAVLPELFPTNVRYTGSGIAYNTASILGAAVAPFIATWLAESYGVGWVGIYLLIASALTFVSLLVMRETKDESLDDVA high_GC_Gram+ Rhodococcus_equi_ATCC_33707 Rhodococcus_equi_ATCC_33707 ADNW02000012 101363..102766 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1404 Rhodococcus_equi_ATCC_33707_Strain_source,_body_site:_Skin_Inquiries_should_be_directed_to_microbe@hgsc.bcm.tmc.edu_This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC._SourceDNA_provided_by_American_Type_Culture_Collection_(ATCC33707).Funded_by_by_Genomes_and_Genetics_at_BCM-HGSC_(U54_HG003273).##Genome-Assembly-Data-START##Finishing_Goal_::_Noncontiguous_FinishedCurrent_Finishing_Status_::_Noncontiguous_FinishedAssembly_Method_::_Newbler_Assembler_v._2.3.10192009Genome_Coverage_::_19.2xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 09-MAR-2011 Rhodococcus_equi_ATCC_33707_Contig5900.fasta,_whole_genome_shotgun_sequence. NA Nocardiaceae_Castellani_and_Chalmers_1919_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhodococcus_equi_D5PK27_COREQ.gb Rhodococcus_Zopf_1891 325553886 Submitted_(05-APR-2010)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ADNW02000012 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1404 NA genomic_DNA NA ATCC_33707 NA Rhodococcus_equi_(Magnusson_1923)_Goodfellow_and_Alderson_1979_(sic) NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 525370 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Nocardiaceae,_Rhodococcus Direct_Submission NA ADNW02000012.1 TCAGGCGACGTCGTCGAGCGATTCGTCCTTGGTCTCGCGCATGACCAGCAGCGACACGAACGTCAGGGCCGACGCGATCAACAGGTAGATGCCGACCCAGCCGACGCCGTAGCTCTCGGCGAGCCACGTCGCAATGAACGGTGCAACCGCCGCACCGAGAATGCTCGCGGTGTTGTAGGCGATACCCGAACCCGTGTAGCGGACATTCGTGGGGAACAATTCCGGCAGCACCGCGCTCATGGGGCCGAACGTCAGACCCATCAGCACCATGCCGATGATCAGGAACACCAGCATCCGGGCGTCGGTCATGCCCTCGGCCGCGAGCAGGACTCCGAAGGTCAGACCGAAAACCATCATGGCGGCAGTGATGACCAGCAGGGTGATGCGTCGGCCGTAGCGGTCGGCGAGCCAGCCGGCGACCGGGATCGTCGCCGCGAAGAACAGCACCGCCACCAGCTGCAGCACCAGGAAGTCCCGGTACTGGAAGCCCGCGCCGTACCCACCGTCGGCGGCGGTCTTGCCGGTGCCGTAGCTGAGCACCCACGTCGTCATGATGTAGAAGAGCGTGTACGTCGCGAGCATCACGAACGTGCCGATGATCAGCTGACGCCAGCTGGTCTTGAAGACCTGCTTGAGCGGAGTCTTGACCTTCTCGCCGTTCGCGACCGCGCGGGCGAACACCGGCGTCTCCTCGAGCTTGAGACGCACGTAGAGACCGATCATCACCATCAGCGCGCTGAGCAGGAACGGGATACGCCAGCCCCACGTGAGGAACGCGCTGTCGAGGTCCGGGTTCGAACTGCTGGTGTAACCGAGTGCCAACGTGATCAGCAGGAACAGGCCGTTGGCGAAGAAGAAGCCGATGGGGGCACCCAACTGCGGCCACATCGCGGCCCACGCACGCTTGCCGCTCTTCGCGGTCTCCGTCGCGAGCAGCGCGGCACCGGACCACTCTCCGCCGAGGCCGAGACCCTGACAGAAGCGCATCAGCGCCAGCAGCGCGGGCGCCCACAGTCCCACCGCGTGGTAGGTGGGCAGCAGGCCGATCAGGAACGTCGCGATGCCCATCGTCAGCAGCGAGCCGACGAGTGTGGCCTTACGGCCGATCCGGTCACCGAAATGGCCGAACAGGATCGAGCCGAGCGGACGGGCGACGAACGCGAGTCCGAAGGTCGCGAACGACGCGAGCAGTGCCGTCGTGTCGTTGCCCTTGGGGAAGAACAGGTGCGGGAAGACCGATACCGCGGCCGTCGCATAGATGTAGAAGTCGTAGAACTCGATCGACGTACCGACCATGCTGGCCACGACGATGCGACTGCGCGGCACACCGGCCACCGTCCCGTCGTCGGGCGACGCCGACAACTCGTCCTGCCCGCGTTCGGCGGACTCCACACCCTTGCTCAC > 958 HMPREF0724_10132 COG:_COG0477 MFS_family_major_facilitator_sugar_transporter EGD26198.1 11 MSNLDTTGQPPAAHAAVGLAVLFSAAAALGGFLFGYDTAVINGAVNAIRDRYDIGAGATGLSVSLTLLGAALGAWVAGSIADRLGRIRVMQIAAVLFVVGALGSAFPFGIVDLTLWRILGGIAVGFASVIAPAYIAEIAPAAIRGRLGSMYQLAIVLGIAVSQLVNYAISDAAGGGRGELFGVEAWQWMLAVESVPALLYLVMTFTIPESPRHLVRCGRENAARKIIGELEGGDDDAVRSRIEEIRTSLGAERARVGVRALFAKSTGVSALVWVGIALAALQQFVGINVIFYYSSTLWQAVGFGEDRSLLISVVSALVNIVGTFVAIAVIDRIGRKPLLLIGSVGMAVSLGTAAVCFHSATVTTNEIGESVATLEGASGTVALVAANAFVFFFALSWGPVVWVLISELFPNRIRAAAVGIATASNWVANFLVSATFPSLADWNLSLTYGGYAVMAVVSIFVVSRFVTETRGRTLEQAG high_GC_Gram+ Rhodococcus_equi_ATCC_33707 Rhodococcus_equi_ATCC_33707 ADNW02000001 146321..147757 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1437 Rhodococcus_equi_ATCC_33707_Strain_source,_body_site:_Skin_Inquiries_should_be_directed_to_microbe@hgsc.bcm.tmc.edu_This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC._SourceDNA_provided_by_American_Type_Culture_Collection_(ATCC33707).Funded_by_by_Genomes_and_Genetics_at_BCM-HGSC_(U54_HG003273).##Genome-Assembly-Data-START##Finishing_Goal_::_Noncontiguous_FinishedCurrent_Finishing_Status_::_Noncontiguous_FinishedAssembly_Method_::_Newbler_Assembler_v._2.3.10192009Genome_Coverage_::_19.2xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 09-MAR-2011 Rhodococcus_equi_ATCC_33707_Contig5812.fasta,_whole_genome_shotgun_sequence. NA Nocardiaceae_Castellani_and_Chalmers_1919_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhodococcus_equi_D5PMD7_COREQ.gb Rhodococcus_Zopf_1891 325556400 Submitted_(05-APR-2010)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ADNW02000001 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1437 NA genomic_DNA NA ATCC_33707 NA Rhodococcus_equi_(Magnusson_1923)_Goodfellow_and_Alderson_1979_(sic) NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 525370 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Nocardiaceae,_Rhodococcus Direct_Submission NA ADNW02000001.1 ATGTCGAACCTCGACACCACCGGCCAGCCCCCGGCCGCTCACGCGGCCGTCGGGCTGGCCGTTCTGTTCTCGGCCGCGGCCGCCCTCGGCGGCTTCCTGTTCGGTTACGACACCGCCGTCATCAACGGGGCCGTCAACGCGATCCGCGACCGCTACGACATCGGGGCCGGCGCGACCGGGCTGTCGGTGTCGCTGACGCTACTCGGCGCGGCGCTGGGCGCCTGGGTGGCCGGGAGCATCGCGGACCGACTCGGCCGCATCCGGGTCATGCAGATCGCGGCCGTGCTGTTCGTCGTCGGCGCCCTCGGCTCGGCCTTCCCGTTCGGGATCGTGGACCTGACGCTCTGGCGGATCCTCGGCGGGATCGCGGTCGGTTTCGCTTCGGTGATCGCCCCCGCCTACATCGCGGAGATCGCGCCGGCGGCGATCCGGGGCCGGCTCGGTTCGATGTACCAACTCGCCATCGTCCTCGGGATCGCGGTCTCGCAACTCGTGAACTACGCGATCTCCGACGCCGCCGGCGGTGGTCGCGGCGAACTGTTCGGTGTCGAGGCGTGGCAGTGGATGCTCGCCGTCGAATCCGTACCCGCCCTGCTCTATCTCGTCATGACGTTCACGATCCCGGAGTCACCGCGGCACCTGGTGCGCTGCGGTCGCGAGAACGCCGCCCGCAAGATCATCGGAGAGCTCGAGGGCGGCGACGACGATGCCGTCCGCAGTCGCATCGAGGAGATCCGCACCTCACTCGGTGCCGAGCGGGCGCGCGTCGGCGTGCGCGCCCTGTTCGCCAAGTCGACCGGCGTGTCCGCGCTCGTCTGGGTCGGAATCGCGCTCGCGGCCCTTCAGCAGTTCGTCGGCATCAACGTGATCTTCTACTACTCGAGCACCCTCTGGCAGGCAGTGGGCTTCGGCGAGGACCGCTCGTTGCTGATCAGCGTCGTGAGCGCGCTCGTCAACATCGTGGGCACGTTCGTCGCGATCGCCGTGATCGACCGCATAGGACGCAAGCCCCTGCTGTTGATCGGCTCCGTGGGCATGGCCGTATCCCTCGGCACCGCCGCAGTGTGTTTCCATTCGGCAACAGTGACGACCAACGAGATCGGCGAGTCCGTCGCCACCCTCGAGGGGGCGTCCGGCACGGTCGCGCTGGTCGCCGCCAATGCCTTCGTCTTCTTCTTCGCGCTGTCCTGGGGGCCGGTCGTCTGGGTACTCATCAGCGAACTGTTCCCCAACCGCATTCGCGCCGCCGCGGTGGGCATCGCCACCGCTTCCAACTGGGTCGCCAACTTCCTGGTGTCCGCGACCTTCCCGTCGCTCGCCGACTGGAACCTCTCGCTCACGTACGGGGGCTACGCCGTGATGGCAGTGGTCTCGATCTTCGTGGTGAGCAGGTTCGTCACCGAGACCCGCGGGCGCACCCTCGAGCAGGCCGGCTGA > 959 HMPREF0724_10479 COG:_COG0477 MFS_family_major_facilitator_transporter EGD25925.1 11 MGSPSVTGAAVPPGSATTDQPPKSSFKRVLTGSMAGAVLEWYDFAIYGILAATVLGPLFFPGDDGVAKLLLALATQGLGFIARPLGGIVFGHLGDKFGRKPMLVTTFILLGTATAAIGLLPTYDQIGIWATVALVVLRMIQGFALGGEFGAAVLLVSEYGEPKKRGFWASWPQAGAPMGTVLATVIVSVLGFFLTDDAFDQWGWRVAFLFAIPLLIVGFWVRRGVEESPVFKAAQEQAAKAPATQERSSILEALSRPRAVLIGLGMRLGENIAFYVYTVFVIAYATTYFDFHRGDIILAVTFASLFQFVGMIGGGAWSDRIGRKKAMLVPAIILVVWAPVFFWLVQLESLPMLWLGVCVGAFFHGMLAGPEAAWITELFPTRYRYAGSSLVFQGSSIIAGAPAPFIAVWLIENFGVGTVIGYLVVTMAITVVALLLSRETKGVDLDEVA high_GC_Gram+ Rhodococcus_equi_ATCC_33707 Rhodococcus_equi_ATCC_33707 ADNW02000003 200999..202348 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1350 Rhodococcus_equi_ATCC_33707_Strain_source,_body_site:_Skin_Inquiries_should_be_directed_to_microbe@hgsc.bcm.tmc.edu_This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC._SourceDNA_provided_by_American_Type_Culture_Collection_(ATCC33707).Funded_by_by_Genomes_and_Genetics_at_BCM-HGSC_(U54_HG003273).##Genome-Assembly-Data-START##Finishing_Goal_::_Noncontiguous_FinishedCurrent_Finishing_Status_::_Noncontiguous_FinishedAssembly_Method_::_Newbler_Assembler_v._2.3.10192009Genome_Coverage_::_19.2xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 09-MAR-2011 Rhodococcus_equi_ATCC_33707_Contig5846.fasta,_whole_genome_shotgun_sequence. NA Nocardiaceae_Castellani_and_Chalmers_1919_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhodococcus_equi_D5PTZ2_COREQ.gb Rhodococcus_Zopf_1891 325556059 Submitted_(05-APR-2010)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ADNW02000003 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1350 NA genomic_DNA NA ATCC_33707 NA Rhodococcus_equi_(Magnusson_1923)_Goodfellow_and_Alderson_1979_(sic) NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 525370 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Nocardiaceae,_Rhodococcus Direct_Submission NA ADNW02000003.1 TCACGCGACCTCGTCGAGGTCCACGCCCTTGGTCTCCCGGCTCAGCAACAGCGCCACCACGGTGATCGCCATCGTCACCACCAGGTATCCGATGACGGTGCCGACACCGAAGTTCTCGATCAGCCACACCGCGATGAACGGCGCCGGGGCACCCGCGATGATCGACGAGCCCTGGAACACCAGCGACGAACCGGCGTACCGGTAGCGGGTCGGGAACAGCTCGGTGATCCATGCCGCCTCCGGACCGGCCAGCATGCCGTGGAAGAACGCGCCCACGCACACGCCGAGCCACAGCATCGGCAGGCTCTCGAGCTGGACCAGCCAGAAGAACACCGGCGCCCACACCACGAGGATGATCGCGGGCACCAGCATCGCCTTCTTGCGGCCGATGCGGTCCGACCACGCGCCGCCGCCGATCATGCCGACGAACTGGAACAGCGACGCGAACGTCACAGCCAGGATGATGTCACCGCGGTGGAAGTCGAAGTACGTCGTGGCGTACGCGATGACGAAGACCGTGTACACGTAGAACGCGATGTTCTCGCCGAGGCGCATGCCCAGGCCGATCAGAACGGCGCGAGGGCGGCTCAGTGCCTCGAGAATCGACGAACGTTCCTGCGTCGCAGGCGCCTTCGCGGCCTGCTCCTGTGCGGCCTTGAAGACCGGGGACTCCTCGACGCCGCGGCGCACCCAGAAGCCGACGATCAGCAGCGGGATCGCGAACAGGAAGGCCACACGCCAGCCCCACTGGTCGAACGCGTCGTCGGTGAGGAAGAAGCCGAGGACCGAGACGATGACGGTCGCCAGCACCGTGCCCATCGGGGCGCCGGCCTGCGGCCACGACGCCCAGAAGCCACGCTTCTTCGGCTCGCCGTACTCGCTGACCAGCAGCACCGCGGCACCGAACTCGCCGCCGAGCGCGAAGCCCTGGATCATGCGCAGCACCACCAGCGCGACCGTCGCCCAGATGCCGATCTGGTCGTACGTCGGCAGCAGGCCGATCGCGGCCGTCGCGGTACCCAGCAGGATGAAGGTGGTGACCAGCATCGGCTTTCGGCCGAACTTGTCGCCGAGATGGCCGAACACGATGCCGCCCAGCGGGCGGGCGATGAAGCCGAGGCCCTGGGTGGCGAGCGCCAGCAGCAGCTTCGCGACGCCGTCGTCACCGGGGAAGAACAGCGGGCCGAGGACGGTCGCGGCGAGGATGCCGTAGATCGCGAAGTCGTACCACTCGAGCACGGCACCGGCCATACTGCCGGTCAGGACGCGCTTGAAGCTGGACTTCGGGGGCTGATCGGTGGTGGCCGAACCCGGCGGCACGGCGGCCCCGGTGACGGACGGAGATCCCAT > 960 REQ_05240 NA mfs_transporter YP_004005334.1 11 MSKGVESAERGQDELSASPDDGTVAGVPRSRIVVASMVGTSIEFYDFYIYATAAVSVFPHLFFPKGNDTTALLASFATFGLAFVARPLGSILFGHFGDRIGRKATLVGSLLTMGIATFLIGLLPTYHAVGLWAPALLALMRFCQGLGLGGEWSGAALLATETAKSGKRAWAAMWPQLGAPIGFFFANGLFLLITLALGYTSSSNPDLDSAFLTWGWRIPFLLSALMVMIGLYVRLKLEETPVFARAVANGEKVKTPLKQVFKTSWRQLIIGTFVMLATYTLFYIMTTWVLSYGTGKTAADGGYGAGFQYRDFLVLQLVAVLFFAATIPVAGWLADRYGRRITLLVITAAMMVFGLTFGVLLAAEGMTDARMLVFLIIGMVLMGLTFGPMSAVLPELFPTNVRYTGSGIAYNTASILGAAVAPFIATWLAESYGVGWVGIYLLIASALTFVSLLVMRETKDESLDDVA high_GC_Gram+ Rhodococcus_equi_103S Rhodococcus_equi_103S NC_014659 546446..547849 Letek,M.,_Gonzalez,P.,_Macarthur,I.,_Rodriguez,H.,_Freeman,T.C.,_Valero-Rello,A.,_Blanco,M.,_Buckley,T.,_Cherevach,I.,_Fahey,R.,_Hapeshi,A.,_Holdstock,J.,_Leadon,D.,_Navas,J.,_Ocampo,A.,_Quail,M.A.,_Sanders,M.,_Scortti,M.M.,_Prescott,J.F.,_Fogarty,U.,_Meijer,W.G.,_Parkhill,J.,_Bentley,S.D._and_Vazquez-Boland,J.A. NA 0:1404 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FN563149.COMPLETENESS:_full_length. NA 25-NOV-2011 Rhodococcus_equi_103S,_complete_genome. NA Nocardiaceae_Castellani_and_Chalmers_1919_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhodococcus_equi_E4WCJ4_RHOE1.gb Rhodococcus_Zopf_1891 312137514 PLoS_Genet._6_(9)_(2010) NA NC_014659 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 20941392 1404 NA genomic_DNA NA 103S NA Rhodococcus_equi_(Magnusson_1923)_Goodfellow_and_Alderson_1979_(sic) NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 685727 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Nocardiaceae,_Rhodococcus The_genome_of_a_pathogenic_rhodococcus:_cooptive_virulence_underpinned_by_key_gene_acquisitions NA NC_014659.1 GTGAGCAAGGGTGTTGAGTCCGCCGAACGCGGGCAGGACGAGTTGTCGGCGTCGCCCGACGACGGGACGGTGGCCGGTGTGCCGCGCAGTCGCATCGTCGTGGCCAGCATGGTCGGTACGTCGATCGAGTTCTACGACTTCTACATCTATGCGACGGCCGCGGTATCGGTCTTCCCGCACCTGTTCTTCCCCAAGGGCAACGACACGACGGCACTGCTCGCGTCGTTCGCGACCTTCGGACTCGCGTTCGTCGCCCGTCCGCTCGGCTCGATCCTGTTCGGCCATTTCGGTGACCGGATCGGCCGTAAGGCCACACTCGTCGGCTCGCTGCTCACGATGGGCATCGCGACGTTCCTGATCGGCCTGCTGCCCACCTACCACGCGGTGGGACTGTGGGCGCCTGCGCTGCTGGCGCTGATGCGCTTCTGTCAGGGTCTCGGCCTCGGCGGAGAGTGGTCCGGTGCCGCGCTGCTCGCGACGGAGACCGCGAAGAGCGGCAAGCGTGCGTGGGCCGCGATGTGGCCGCAGTTGGGTGCCCCCATCGGCTTCTTCTTCGCCAACGGCCTGTTCCTGCTGATCACGTTGGCACTCGGCTACACCAGCAGTTCGAACCCGGACCTCGACAGCGCGTTCCTCACGTGGGGCTGGCGTATCCCGTTCCTGCTCAGCGCGCTGATGGTGATGATCGGTCTCTACGTGCGTCTCAAGCTCGAGGAGACGCCGGTGTTCGCCCGCGCGGTCGCGAACGGCGAGAAGGTCAAGACTCCGCTCAAGCAGGTCTTCAAGACCAGCTGGCGTCAGCTGATCATCGGCACGTTCGTGATGCTCGCGACGTACACGCTCTTCTACATCATGACGACGTGGGTGCTCAGCTACGGCACCGGCAAGACCGCCGCCGACGGTGGGTACGGCGCGGGCTTCCAGTACCGGGACTTCCTGGTGCTGCAGCTGGTGGCGGTGCTGTTCTTCGCGGCGACGATCCCGGTCGCCGGCTGGCTCGCCGACCGCTACGGCCGACGCATCACCCTGCTGGTCATCACTGCCGCCATGATGGTTTTCGGTCTGACCTTCGGAGTCCTGCTCGCGGCCGAGGGCATGACCGACGCCCGGATGCTGGTGTTCCTGATCATCGGCATGGTGCTGATGGGTCTGACGTTCGGCCCCATGAGCGCGGTGCTGCCGGAATTGTTCCCCACGAATGTCCGCTACACGGGTTCGGGTATCGCCTACAACACCGCGAGCATTCTCGGTGCGGCGGTTGCACCGTTCATTGCGACGTGGCTCGCCGAGAGCTACGGCGTCGGCTGGGTCGGCATCTACCTGTTGATCGCGTCGGCCCTGACGTTCGTGTCGCTGCTGGTCATGCGCGAGACCAAGGACGAATCGCTCGACGACGTCGCCTGA > 961 RHOER0001_0424 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 MFS_transporter,_metabolite:H+_symporter_family_protein EEN88846.1 11 MTSIASPTATRAAATVKARKAALGSFVGTAIEWYDFFIYGTAAALVLGKQFFPGTSDLAGTLAAFATLAVGFVARPIGGIVMGHFGDRIGRKSMLVTSLMLMGCATVAIGLLPNYAAIGVFAPVLLVTLRFVQGLGVGGEWGGAVLVATENAPEGRKGLYGSAPQIGVPAGVLVANLVYLPLAAFMDDDAFNSWGWRIPFLLSAVLVGVAMWIRLGLEESDEFTASKSEAPAESMPILEVLTRHWKTVLLAGGTFIATNGIAYAYMVYVLKYGETELGFSKTTMLFLLIASCPFWMAGMAFSAHKSDTLGRRTVYIRSSITLVVAAAVFFPLIDTAIVPVMLVSMIALGFTLGCCAGPQAALFAELFPAHIRYSGASLGYQIGAILGGGLAPMIATALYAAFDTSFAITAYFVIIAVISLVSILLLPEPQLIPKNTAAQKAS high_GC_Gram+ Rhodococcus_erythropolis_SK121 Rhodococcus_erythropolis_SK121 ACNO01000014 104724..106052 Sebastian,Y.,_Madupu,R.,_Durkin,A.S.,_Torralba,M.,_Methe,B.,_Sutton,G.G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1329 This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_38xSequencing_Technology:_454. NA 01-MAY-2009 Rhodococcus_erythropolis_SK121_contig00018,_whole_genome_shotgun_sequence. NA Nocardiaceae_Castellani_and_Chalmers_1919_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhodococcus_erythropolis_C3JI37_RHOER.gb Rhodococcus_Zopf_1891 229323030 Submitted_(20-APR-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ACNO01000014 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1329 NA genomic_DNA NA SK121 NA Rhodococcus_sp._strain_NI86/21 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 596309 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Nocardiaceae,_Rhodococcus Direct_Submission NA ACNO01000014.1 TCACGAGGCTTTCTGTGCGGCAGTGTTTTTCGGGATCAATTGAGGTTCCGGGAGCAGCAGGATGGAAACCAGGCTGATCACGGCAATGATCACGAAGTAGGCGGTGATGGCGAACGAGGTGTCGAAGGCGGCGTAGAGCGCGGTGGCGATCATCGGGGCCAGACCGCCGCCGAGGATTGCGCCGATCTGGTAGCCGAGTGACGCTCCGCTGTAGCGGATGTGTGCGGGAAACAATTCGGCGAACAGTGCCGCTTGTGGGCCGGCGCAGCAGCCGAGCGTGAAGCCGAGGGCGATCATCGATACGAGCATCACCGGAACGATCGCTGTGTCGATCAGCGGAAAGAACACCGCTGCCGCCACTACCAGGGTGATCGAACTGCGGATGTAGACGGTCCGGCGTCCGAGAGTGTCCGACTTGTGAGCGCTGAAAGCCATTCCCGCCATCCAGAACGGGCAGGATGCGATGAGAAGAAAGAGCATCGTGGTCTTGCTGAAGCCGAGTTCGGTCTCGCCGTACTTGAGGACGTAAACCATGTACGCGTACGCGATTCCGTTGGTGGCGATGAAGGTTCCACCGGCGAGGAGCACAGTCTTCCAGTGTCTGGTGAGAACCTCGAGAATCGGCATGGACTCCGCCGGTGCCTCGGACTTCGACGCGGTGAACTCGTCACTTTCCTCGAGGCCGAGACGGATCCACATCGCAACGCCCACCAGAACTGCGCTGAGCAGGAACGGGATTCGCCATCCCCAGGAGTTGAATGCATCGTCGTCCATGAAGGCGGCGAGGGGGAGATAGACGAGATTGGCCACCAGTACGCCTGCGGGAACACCGATTTGTGGTGCGCTGCCGTACAGCCCCTTCCTGCCCTCCGGTGCGTTTTCGGTGGCGACCAGAACTGCGCCGCCCCACTCGCCGCCGACACCGAGTCCCTGAACGAATCGCAAGGTCACCAGGAGTACGGGGGCAAAGACGCCGATAGCGGCGTAGTTGGGTAGCAGCCCGATGGCAACGGTGGCGCAGCCCATCAGCATCAACGAGGTGACCAACATGGATTTGCGTCCGATGCGGTCGCCGAAGTGGCCCATCACGATTCCGCCGATGGGACGCGCGACGAATCCGACGGCGAGGGTGGCGAAGGCGGCGAGGGTGCCGGCCAGATCGGACGTGCCGGGGAAGAACTGCTTGCCGAGTACGAGCGCGGCGGCGGTGCCGTAGATGAAGAAGTCGTACCACTCGATGGCGGTGCCGACAAAGCTGCCGAGGGCGGCCTTACGCGCCTTGACCGTCGCGGCGGCGCGCGTTGCGGTCGGTGAGGCGATGGAGGTCAT > 962 RHOER0001_0061 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 proline/betaine_transporter,_MFS_family EEN85706.1 11 MTTPENSISALEVAESPDVCVTDNASVKRAVKATMLGNAMEWFDFGVYAYLATTIGKVFFPDASGSAQLLSTFAIFAAAFIVRPLGGLFFGPLGDRIGRKKVLATTIILMAGSTFAIGLIPSYESIGIAAPILLVLLRLLQGFSTGGEYGGASTFVAEYAPDKRRGFFASFLEFGTLAGYVAAAGIVTIIQTVVSAEDLLQWGWRIPFLIAGPLGLIGLYLRLRLEETPAFQMMEQAEERSLADESTGKKLRETLVDNWRPLVLCIVLVATYNIAHYGLLSYMPTYLTNTLGYDESHGLVLMIIVMIVMMMGISYVGKFSDRVGRKPLLLSGFIGFFVLSLPAYLLIGVGNYVTVFLGLAILGGLLLLFVGVFPSVLPALFPTGIRYGGLAIGYNLAVSIFGGTTPLVLTALESATGSNLVAPMYMMIAAVIGGIAVLMIPETARKPLDGSPPSVATDEEARRIIRKVRRKRMKADNLEV high_GC_Gram+ Rhodococcus_erythropolis_SK121 Rhodococcus_erythropolis_SK121 ACNO01000075 63466..64908 Sebastian,Y.,_Madupu,R.,_Durkin,A.S.,_Torralba,M.,_Methe,B.,_Sutton,G.G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1443 This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_38xSequencing_Technology:_454. NA 01-MAY-2009 Rhodococcus_erythropolis_SK121_contig00001,_whole_genome_shotgun_sequence. NA Nocardiaceae_Castellani_and_Chalmers_1919_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhodococcus_erythropolis_C3JRW5_RHOER.gb Rhodococcus_Zopf_1891 229319844 Submitted_(20-APR-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ACNO01000075 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1443 NA genomic_DNA NA SK121 NA Rhodococcus_sp._strain_NI86/21 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 596309 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Nocardiaceae,_Rhodococcus Direct_Submission NA ACNO01000075.1 TCATACCTCGAGGTTATCGGCCTTCATTCTCTTTCGACGAACCTTGCGGATGATCCGACGTGCTTCCTCGTCGGTGGCGACGGAGGGCGGAGAGCCGTCGAGTGGCTTGCGTGCGGTCTCGGGGATCATCAGGACTGCGATACCGCCGATCACTGCGGCGATCATCATGTACATCGGTGCGACCAAGTTGCTGCCCGTTGCACTTTCGAGGGCGGTGAGCACCAGGGGAGTGGTCCCGCCGAAGATGGAGACCGCGAGGTTGTATCCGATTGCCAAGCCGCCGTACCTGATTCCGGTCGGAAAGAGTGCGGGAAGCACGGACGGGAACACTCCGACGAACAGCAGGAGCAAACCGCCGAGAATTGCGAGTCCCAGGAAGACAGTCACGTAGTTGCCGACGCCGATCAGAAGGTAGGCAGGTAGGGACAGGACGAAGAATCCGATGAAACCGCTGAGCAGCAAGGGTTTACGCCCGACTCGGTCCGAGAACTTTCCGACGTAGCTGATTCCCATCATCATCACGATCATGACGATGATCATCAGAACGAGTCCGTGGGATTCGTCGTAACCCAACGTGTTGGTCAGATACGTCGGCATGTAGCTGAGCAGGCCGTAGTGAGCGATGTTGTACGTGGCCACCAGGACGATGCACAGAACAAGCGGACGCCAGTTGTCGACGAGAGTTTCGCGTAGTTTCTTGCCTGTGGATTCATCTGCGAGGGAGCGCTCTTCGGCCTGCTCCATCATCTGGAATGCGGGGGTTTCCTCCAAACGCAGACGGAGGTACAGGCCGATGAGACCCAGAGGTCCGGCAATGAGGAAGGGGATGCGCCAGCCCCACTGGAGTAGGTCCTCGGCACTGACGACGGTCTGGATGATCGTCACGATGCCCGCTGCCGCCACATATCCTGCCAGAGTCCCGAATTCGAGGAAGCTGGCGAAGAAACCGCGGCGCTTGTCCGGTGCGTATTCGGCGACGAACGTACTGGCTCCGCCGTATTCGCCGCCGGTGGAAAAGCCCTGCAGTAGGCGTAGGAGTACCAGCAGGATCGGGGCGGCGATACCGATGGATTCGTAGCTCGGGATGAGGCCGATGGCGAAGGTGCTGCCCGCCATCAGAATGATGGTGGTGGCCAGGACTTTCTTGCGTCCGATGCGGTCACCGAGTGGACCGAAGAACAATCCGCCGAGAGGGCGGACGATGAAGGCAGCCGCAAAAATTGCAAACGTCGAGAGGAGTTGAGCGCTGCCGCTCGCGTCCGGGAAGAACACTTTTCCTATAGTGGTAGCTAGATATGCGTAAACGCCGAAATCGAACCACTCCATGGCATTTCCGAGCATCGTTGCCTTGACAGCGCGCTTGACGGACGCATTGTCGGTGACGCAGACATCGGGTGATTCGGCCACTTCGAGAGCGCTGATCGAGTTCTCTGGTGTAGTCAT > 963 ROP_22290 NA hydrolase YP_002779421.1 11 MDLLDDARALQGDLVQLRRVLHREPEVGLDLPRTQETVLAALDGLPLEISTGTRTTSVTAVLRGGRRSAADAQTVLLRADMDGLPVTEQTGLDYAAQNGAMHGCGHDLHTAALVGAAQLLSRHRDRLAGDVVLMFQPGEEGWDGAKVMVDEGVLDASGRRADTAYGMHVFSCQKPQGRFFSKAGTLLAASYKLTVTVRGAGGHGSSPSTARDPITAMAEMITSLQTMVTRTFDVFDPVVVTVANVQAGSRHNIIPDDARFEATVRCYSPATYEKVPAALRRVLEGVASAQRVDVDVAVDPEFPMTVNDGKEVAFGAEVVSDLMGEDRYETVTHPMSGSEDFSYVLQEVPGAFIGLGACMPGADPEAAPMNHSPRAQFDDAVLADAATIYAGLAVRRLDKARLDTAAAAAGSDAR high_GC_Gram+ Rhodococcus_opacus_B4 Rhodococcus_opacus_B4 NC_012522 2387690..2389018 Takarada,H.,_Sekine,M.,_Hosoyama,A.,_Yamada,R.,_Fujisawa,T.,_Omata,S.,_Shimizu,A.,_Tsukatani,N.,_Tanikawa,S.,_Fujita,N._and_Harayama,S. NA 1325:>1329 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AP011115.Kato,J.,_Na,K.,_Ohtake,H._and_Nagayasu,K._are_at_Department_ofMolecular_Biotechnology,_Hiroshima_University.Rhodococcus_opacus_B-4_strain_was_isolated_as_a_benzene-tolerantbacterium_(Kyung-su_Na_et_al_2005)._The_complete_genome_analysis_ofR._opacus_B-4_was_carried_out_by_NITE._The_genome_analysisindicated_that_this_strain_has_one_linear_chromosome,_two_linearplasmids_pROB01,_pROB02,_and_three_circular_plasmids_pKNR,_pKNR01,pKNR02.This_work_was_supported_by_New_Energy_and_Industrial_TechnologyDevelopment_Organization_(NEDO).Please_visit_our_web_site.URL:http://www.bio.nite.go.jp/DOGAN_;_Database_of_Genomes_Analyzed_at_NITEThe_database_contains_genome_sequence_data,_physical_maps_and_thegenomic_and_proteomic_data_of_the_microorganisms_analyzed.URL:http://www.bio.nite.go.jp/dogan/TopThe_microbial_genomic_DNA_clones_used_for_the_sequencing_projectare_available_through_the_NBRC.URL:http://www.nbrc.nite.go.jp/e/index.html.COMPLETENESS:_full_length. NA 30-SEP-2011 Rhodococcus_opacus_B4,_complete_genome. NA Nocardiaceae_Castellani_and_Chalmers_1919_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhodococcus_opacus_C1B251_RHOOB.gb Rhodococcus_Zopf_1891 226359415 Unpublished NA NC_012522 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1329 NA genomic_DNA NA B4 NA Rhodococcus_opacus_Klatte_et_al._1995 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 632772 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Nocardiaceae,_Rhodococcus Comparison_of_the_complete_genome_sequences_of_Rhodococcus_erythropolis_PR4_and_Rhodococcus_opacus_B4 NA NC_012522.1 CTACTGCTGGGCCGCGAGATCCCGTCCCCGGGTCTCCGGGATCGTGACCAGCGCGGCGATCGAGACGGCGATCAGCGCGAGTGCGTACCACTCGAACAGCTCCGGCGTGCCGCGGTCGGCGAAGAACGTCTGGACGTACGCCGCCGTCCCACCGAACGCCGCGACCCCGATCGAGTACGGCACCCCGACACCGGCGGCACGCAACCCGGTGGGGAACAGTTCGGCCATCATTGCCGGCATGACCGCCAGGATCGCGCCCATCACGAACAGTGCGATCGCCATCGCGAAGAACAGGGTGATTGCGCTGTGGCCGATCATGGCATTGAGTGGAAACAGCAGGGCGGCGATGCCGAGGTTGCCGATGTACAGCACCGGTTTGCGCCCGATCCGATCCGACACGGCGCCCCAGAAGGGCAGCGACGCAATCAGAACGAGGTTCGCCCCGACCCCGGCCCACAGAGCACCCGACGGGTCGATGCCCCGGACCGCGATCGCGTACGCCGGCGCCGACACCGCCCACACGTAGTAGACGACGGTGCCACCGACCGTGAAGAACAGGATCTGGAACACCTGCCTCCGGTGCGCCACGAACAGCTGCCACATCGACTGCTTCGCGGTGTCGTCACCCGACTCCTCGTAGACCTCGGTCTCGCTCATCCGGGACCGCATCCACAGCACGAACAGGCCGAGCACACCCCCCAGCAGGAACGGCACCCGCCAGCCCCAGTCGGCCATCTGCTCCGAACTCAGCGTCGTCGTGAGCAGTGCGCCGAGCAGCGTGCCCACGACAACTCCGGTGGTGTTGGAGATGTAGATGAGGCTGGACCACAGCCCGCGCCGCGCCGTCGGCGCGAATTCCACGATGTACGTCTGCGCGGACGGCAACTCGCCGCCGTGGGCGACGCCCTGCGCGAGCCGCGCCACGACGAGCACCACCGCCGCTGCGATGCCGATCGTCTGATGGGTCGGGGTCAGCCCGATGACGAGGCTGCCGACGGCCGCCAGTCCGACGGCGAGCGTCATGGACAGCTTGCGTCCCCGGCGGTCCGACAGCCAGCCGAACAGCAGACCGCCGAACGGCCGGGCGACGAATCCGACGGCGAAGACGCCGAACGACGCGAGCAGGTCGGAGACGGCAGATCCGGTGTGGAAGAACTGCGGGGCGAAGAACGCGGCGAACGTGGCGTAGACGGTCCAGTCGAAGTACTCGATCCCGTTGCCCGTGCCGACGCCGACGATCGCGCGCGCCTTCTCCCAACGCTCGGACCGCGGACGGACAGTGGGCGTGCCTGCGTTCACGGACCCGCTCTCGGTGGCGATCCCGGTCAT > 964 ROP_26400 NA MFS_transporter YP_002779832.1 11 MNVSAVTHESPTSETPPTAVAKTPKKAALASFLGSALEYYDFFIYGSAAALVFGHTFFPAGNDAIGTVAALATFGVGYVARPVGGIVLGHFGDKLGRKKILLLTLLIMGLSSLAIGFLPTYEQIGIAAPILLVLCRLAQGFSAGGEAAGASTLTLEHSPEGRRAFFTSFTMTGYAAGMVLATLVFIPVAALPKDQLDSWGWRIPFWCSAVMLVVAYFVRTKLDETPVFEESREHAEVQKLPVVTVVTTQWRDVLRIALCSLFAVGQTVFTVFGLAYATGPDVGIDRTTMLWASSASIAGSIVAIPLLAKLSDRVGRRPVWITGALGCGVTIFGYFWAISVGSVPLIFLAALLTMTLFYSMVNGLWPSFFTEMFAAPVRYSGFAVGTQIGFLIAGFAPAIGWALLGTGVNAWVPVAVFTALCMLISSVAAFTARETYRVPLAELGRPSTSRE high_GC_Gram+ Rhodococcus_opacus_B4 Rhodococcus_opacus_B4 NC_012522 2838582..2839937 Takarada,H.,_Sekine,M.,_Hosoyama,A.,_Yamada,R.,_Fujisawa,T.,_Omata,S.,_Shimizu,A.,_Tsukatani,N.,_Tanikawa,S.,_Fujita,N._and_Harayama,S. NA 0:1356 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AP011115.Kato,J.,_Na,K.,_Ohtake,H._and_Nagayasu,K._are_at_Department_ofMolecular_Biotechnology,_Hiroshima_University.Rhodococcus_opacus_B-4_strain_was_isolated_as_a_benzene-tolerantbacterium_(Kyung-su_Na_et_al_2005)._The_complete_genome_analysis_ofR._opacus_B-4_was_carried_out_by_NITE._The_genome_analysisindicated_that_this_strain_has_one_linear_chromosome,_two_linearplasmids_pROB01,_pROB02,_and_three_circular_plasmids_pKNR,_pKNR01,pKNR02.This_work_was_supported_by_New_Energy_and_Industrial_TechnologyDevelopment_Organization_(NEDO).Please_visit_our_web_site.URL:http://www.bio.nite.go.jp/DOGAN_;_Database_of_Genomes_Analyzed_at_NITEThe_database_contains_genome_sequence_data,_physical_maps_and_thegenomic_and_proteomic_data_of_the_microorganisms_analyzed.URL:http://www.bio.nite.go.jp/dogan/TopThe_microbial_genomic_DNA_clones_used_for_the_sequencing_projectare_available_through_the_NBRC.URL:http://www.nbrc.nite.go.jp/e/index.html.COMPLETENESS:_full_length. NA 30-SEP-2011 Rhodococcus_opacus_B4,_complete_genome. NA Nocardiaceae_Castellani_and_Chalmers_1919_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhodococcus_opacus_C1B439_RHOOB.gb Rhodococcus_Zopf_1891 226359415 Unpublished NA NC_012522 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1356 NA genomic_DNA NA B4 NA Rhodococcus_opacus_Klatte_et_al._1995 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 632772 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Nocardiaceae,_Rhodococcus Comparison_of_the_complete_genome_sequences_of_Rhodococcus_erythropolis_PR4_and_Rhodococcus_opacus_B4 NA NC_012522.1 CTACTCCCGCGAGGTCGACGGACGCCCGAGTTCGGCCAGCGGCACCCGGTACGTCTCGCGGGCGGTGAAGGCGGCCACGGACGAGATCAGCATGCAGAGCGCCGTGAAGACGGCGACCGGCACCCACGCGTTCACCCCGGTCCCCAGCAGCGCCCAGCCGATCGCCGGGGCGAAACCGGCGATGAGGAAACCGATCTGCGTGCCGACGGCGAACCCGGAATATCGCACGGGCGCAGCGAACATCTCGGTGAAGAAGCTCGGCCACAGGCCGTTCACCATCGAGTAGAACAACGTCATCGTGAGCAGAGCAGCGAGGAAGATCAGCGGAACGGAGCCGACCGAGATGGCCCAGAAGTACCCGAAGATCGTCACGCCGCACCCGAGAGCGCCGGTGATCCACACGGGGCGGCGCCCGACGCGGTCCGACAACTTGGCGAGCAGCGGTATCGCGACGATGGAACCCGCGATCGACGCCGACGACGCCCACAGCATCGTGGTCCGGTCGATGCCGACGTCGGGTCCGGTGGCGTAGGCGAGCCCGAAGACGGTGAACACCGTCTGCCCGACGGCGAACAGCGAGCACAGGGCGATCCGCAGAACGTCCCGCCACTGGGTGGTCACGACGGTGACGACGGGCAGCTTCTGCACTTCCGCGTGCTCACGCGACTCCTCGAACACCGGGGTCTCGTCGAGCTTGGTGCGCACGAAGTAGGCGACCACGAGCATCACGGCGCTGCACCAGAACGGGATTCGCCATCCCCAGCTGTCGAGCTGGTCCTTCGGCAGCGCGGCCACGGGGATGAAGACGAGGGTCGCGAGCACCATCCCGGCGGCGTAACCCGTCATGGTGAAGCTGGTGAAGAAGGCCCGCCGCCCCTCGGGTGAGTGCTCGAGCGTGAGCGTGCTGGCGCCCGCCGCCTCGCCGCCCGCCGAGAATCCCTGCGCGAGGCGGCACAGGACGAGCAGGATCGGGGCGGCGATGCCGATCTGCTCGTACGTGGGCAGGAAGCCGATCGCGAGACTCGACAGGCCCATGATGAGCAGCGTCAGCAACAGAATCTTCTTACGGCCCAGCTTGTCTCCGAAATGGCCCAGCACGATTCCGCCGACCGGCCGGGCCACGTAACCGACGCCGAACGTCGCGAGCGCGGCGACCGTGCCGATCGCGTCGTTGCCGGCCGGGAAGAACGTGTGCCCGAAGACCAGGGCCGCGGCGGATCCGTAGATGAAGAAGTCGTAATACTCGAGCGCGCTGCCGAGGAACGACGCGAGCGCCGCCTTCTTCGGCGTCTTCGCGACGGCGGTGGGGGGCGTCTCGGACGTCGGACTTTCGTGCGTCACGGCGGATACGTTCAT > 965 ROP_70690 NA hypothetical_protein YP_002784261.1 11 MASDLPRTIAPSLPADTPGPHSHRLGIIAVVATFGGLLFGYDTGVINGALEPLKEDLQLRPRRRNTDSDHCNIRCHPARQASRSGSCSEPHVEPRPRRIRTKLRSPRLCREA high_GC_Gram+ Rhodococcus_opacus_B4 Rhodococcus_opacus_B4 NC_012522 7720284..7720622 Takarada,H.,_Sekine,M.,_Hosoyama,A.,_Yamada,R.,_Fujisawa,T.,_Omata,S.,_Shimizu,A.,_Tsukatani,N.,_Tanikawa,S.,_Fujita,N._and_Harayama,S. NA 0:339 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AP011115.Kato,J.,_Na,K.,_Ohtake,H._and_Nagayasu,K._are_at_Department_ofMolecular_Biotechnology,_Hiroshima_University.Rhodococcus_opacus_B-4_strain_was_isolated_as_a_benzene-tolerantbacterium_(Kyung-su_Na_et_al_2005)._The_complete_genome_analysis_ofR._opacus_B-4_was_carried_out_by_NITE._The_genome_analysisindicated_that_this_strain_has_one_linear_chromosome,_two_linearplasmids_pROB01,_pROB02,_and_three_circular_plasmids_pKNR,_pKNR01,pKNR02.This_work_was_supported_by_New_Energy_and_Industrial_TechnologyDevelopment_Organization_(NEDO).Please_visit_our_web_site.URL:http://www.bio.nite.go.jp/DOGAN_;_Database_of_Genomes_Analyzed_at_NITEThe_database_contains_genome_sequence_data,_physical_maps_and_thegenomic_and_proteomic_data_of_the_microorganisms_analyzed.URL:http://www.bio.nite.go.jp/dogan/TopThe_microbial_genomic_DNA_clones_used_for_the_sequencing_projectare_available_through_the_NBRC.URL:http://www.nbrc.nite.go.jp/e/index.html.COMPLETENESS:_full_length. NA 30-SEP-2011 Rhodococcus_opacus_B4,_complete_genome. NA Nocardiaceae_Castellani_and_Chalmers_1919_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhodococcus_opacus_C1B4X7_RHOOB.gb Rhodococcus_Zopf_1891 226359415 Unpublished NA NC_012522 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 339 NA genomic_DNA NA B4 NA Rhodococcus_opacus_Klatte_et_al._1995 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 632772 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Nocardiaceae,_Rhodococcus Comparison_of_the_complete_genome_sequences_of_Rhodococcus_erythropolis_PR4_and_Rhodococcus_opacus_B4 NA NC_012522.1 TCAGGCCTCCCTGCAGAGGCGAGGGCTTCGTAGCTTTGTGCGTATCCTTCTTGGTCTTGGCTCAACATGAGGCTCCGAACAAGAGCCGCTGCGACTGGCTTGTCTCGCCGGGTGGCAGCGGATGTTGCAATGGTCAGAATCTGTGTTGCGGCGGCGCGGACGGAGCTGGAGGTCTTCCTTGAGCGGTTCGAGTGCGCCGTTGATGACTCCGGTGTCGTATCCGAAGAGCAGGCCGCCGAAGGTGGCGACGACGGCGATGATGCCGAGTCTGTGCGAGTGCGGCCCGGGGGTATCGGCAGGCAGGGACGGGGCGATAGTTCGAGGTAGATCGCTGGCCAT > 966 RHA1_ro03974 tc:_2.A.1 NAD-dependent_aldehyde_dehydrogenase YP_703929.1 11 MTVLDTAPHTLQFVPVADRILVAGQWRQANGPAFAVTDPSTGETLQVIHQATADDADEAVRKGRAAADDPAWRALLPHQRAKYLHRIADAIEANTSRLALLQSYNTGKTVAETTALVGSAAGTFRYFAAVLETADDDLTTPRGNFLTMSVLEPIGVVGAIAPWNSPVASDAQKIAPALAAGNAVVLKPAEWTPLVSLELARLIDQTQLPAGLLSVLPGKGSVVGDAIVTHPGVGKVTFTGGTNTGRSIAHAAADKLMPVSLELGGKSPTIVLDDADLDAAVNGVMYGIFSSTGQSCIAGSRLFVDRRIYDEFLEKLVAKTQQLRLGPGRDPGTQVGPMVHRKHRDSVAAYVDLAREEGGRVLCGGAIPDDERLRDGAYYLPTIIDGLANSSRTCQEEIFGPVLVVLPFDGDADLVAQANDSVFGLASGIWTGDYRRAWKLARRLQAGTVWINTYKQFSISTPFGGVKESGLGVEKGRSGIAAYSRQKSIYWGLDEEPNPWAE high_GC_Gram+ Rhodococcus_jostii_RHA1 Rhodococcus_jostii_RHA1 NC_008268 4177305..4178681 McLeod,M.P.,_Warren,R.L.,_Hsiao,W.W.,_Araki,N.,_Myhre,M.,_Fernandes,C.,_Miyazawa,D.,_Wong,W.,_Lillquist,A.L.,_Wang,D.,_Dosanjh,M.,_Hara,H.,_Petrescu,A.,_Morin,R.D.,_Yang,G.,_Stott,J.M.,_Schein,J.E.,_Shin,H.,_Smailus,D.,_Siddiqui,A.S.,_Marra,M.A.,_Jones,S.J.,_Holt,R.,_Brinkman,F.S.,_Miyauchi,K.,_Fukuda,M.,_Davies,J.E.,_Mohn,W.W._and_Eltis,L.D. NA 1373:>1377 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000431.Bacteria_available_by_contacting_Lindsay_Eltis_(leltis_atinterchange.ubc.ca).COMPLETENESS:_full_length. NA 19-JAN-2012 Rhodococcus_jostii_RHA1_chromosome,_complete_genome. NA Nocardiaceae_Castellani_and_Chalmers_1919_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhodococcus_sp_Q0S9L6_RHOSR.gb Rhodococcus_Zopf_1891 111017022 Proc._Natl._Acad._Sci._U.S.A._103_(42),_15582-15587_(2006) NA NC_008268 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 17030794 1377 NA genomic_DNA NA RHA1 NA Rhodococcus_sp._IFO16295 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 101510 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Nocardiaceae,_Rhodococcus The_complete_genome_of_Rhodococcus_sp._RHA1_provides_insights_into_a_catabolic_powerhouse NA NC_008268.1 ATGACGACGGTATCGCCCGCCATGGCTGCCACAGCTGAGATGATCAGCGCCCGACTCGAACGCCTGCCGATGAGCAGGTGGCATATCAAGGCCCGCGTCATCGTCGGCGCCGTCACGTTCTTCGACGGCTTCGACCAGTTGATGATCGCGTACTCTCTCCCCGTCCTCATCCCCAAGTGGGGTCTGACCCCCGGCGACATCGCCTGGGTGATCGCCATCGGCGGCATCGGCATGCTCGTCGGCGCCCTCGCCGGCGGCTGGTTCGCCGACCGCGTCGGCCGGCTCAACGTCATCATTTTCTCGCTCGCGCTCTACGCAGTGATGAGCCTCGGCATGGCGTTCACCGACAGCCTGATGCTCTTCCTCGTCTTCCGATTCGTGCAGGGTATCGGCCTCGGCGCCGAGGTCCCGGTGGCAGCGAGCTACATCGGCGAGATCACCAAGGCCCACAAGCGTGGACGATTCGTGCTGCTCTACGAGGTGATCTTCCCGATCGGGCTCGTGATGTCGGCAATCGTGTCGGCGTGGGTGGTCCCGAACTACGGCTACAAGATCCTGTTCGCGCTCGGTGCGCTGCCCGTCGTGCTCCTGCCGCTGCTGTGGAAGCTGCCCGAGTCGCCGCGCTGGCTCGCGTCCCGTGGCCGCTACGAAGACGCGCACGATGCCATGACCCGCATCGAGAACGAGATCACCGGAAAGTACGGCAAGACGCTTCCGGCTCCGCAGCCGCTGCCCGCCGTCACCGTCGATCCCCGCCGCGGAACCTTCGCGGAGGCCTTCCGGGGTATCTACCTGCGTCGCACTCTCATGCTCGCGGCCATCTGGGGCTGCGCCTACTTCGTCAACTACGGCATCGCGTCCTGGCTGCCGACGCTGTACCGATCCGCATTCGACGTCAGCGTCGACACCGCCCTGCACTACAGCATCGTCACCAGCGTCGCCGGCCTGATCGGCTGCATCCTCGTCGCGTTCCTCATCGACAACCTCGGTCGCCGCATCTGCATCACCGCGTCGATGGTCCTGTGCTCGTCGCTGCTCTTCCTGCTCGCCGCCTCCGGCGCCGACACCGCGACGAAGGTCCTGTTCTGGTCGGCCGGATCCGCGCTGTTCGTCTTCGCGGTCAACATGGCGCTCTACGTCTACACGGCGGAGCTGTACCCGACCCGGATGCGAGCCATCGGCTGCGCGATCGGCGGAGCGAGCGGACGCCTCGGCATCATCGTCGGTCCCCTCGCCGTCGGCGCCATCCTCGACGGGGGCGGCACACTCACCGTCGTCTTCGGAATGTTCGCCGCGGTCGCAATGATCGGTGCCCTCGTGGTCGGCTTCTTCGCCGTCGAAACCCGCGAAAAGACTCTCGAGGAGATCTCCCAGTGA > 967 RHA1_ro03106 tc:_2.A.1.6.6 shikimate_MFS_family_protein YP_703067.1 11 MTTRTSRGAAPGQSSALRRPMARIAAASLVGTTIEFYDFLIYGTAAALVFGPLFFPSLGPGAATVAAIATFGIAFVVRPLGAIVFGHYGDRLGRKRTLVTSLVVMGGSTFAIGLVPTADAIGVAAPLMLVFLRVLQGLALGGEWAGAALLTSEYADSGERGKYSMFPQLGPGIGVALSSATFLLTSLTMSGAAFAAWGWRIPFLISAVLVCVGLWVRLNIAETPSFTKVVEGRQQLKLPFLDAIRDQWRQILLGGGMLSMTFGCFYISIVFLTGYASAAPEVGVLGLPQRSILVVNILAALVMCVVVVASAILSDRFGRRAVLLTGTCFGIVAGPLAFAVMQPGNAVSFFIAMAVLMITLGIPYGPAAAYLPELFHARYRYSGAGMAYNLAGILGGAVPLLLADRLVDAFGKAGIAGFLSALAVLSTACLIALKEPLGETMDDE high_GC_Gram+ Rhodococcus_jostii_RHA1 Rhodococcus_jostii_RHA1 NC_008268 3287637..3288971 McLeod,M.P.,_Warren,R.L.,_Hsiao,W.W.,_Araki,N.,_Myhre,M.,_Fernandes,C.,_Miyazawa,D.,_Wong,W.,_Lillquist,A.L.,_Wang,D.,_Dosanjh,M.,_Hara,H.,_Petrescu,A.,_Morin,R.D.,_Yang,G.,_Stott,J.M.,_Schein,J.E.,_Shin,H.,_Smailus,D.,_Siddiqui,A.S.,_Marra,M.A.,_Jones,S.J.,_Holt,R.,_Brinkman,F.S.,_Miyauchi,K.,_Fukuda,M.,_Davies,J.E.,_Mohn,W.W._and_Eltis,L.D. NA 0:1335 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000431.Bacteria_available_by_contacting_Lindsay_Eltis_(leltis_atinterchange.ubc.ca).COMPLETENESS:_full_length. NA 19-JAN-2012 Rhodococcus_jostii_RHA1_chromosome,_complete_genome. NA Nocardiaceae_Castellani_and_Chalmers_1919_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhodococcus_sp_Q0SC27_RHOSR.gb Rhodococcus_Zopf_1891 111017022 Proc._Natl._Acad._Sci._U.S.A._103_(42),_15582-15587_(2006) NA NC_008268 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 17030794 1335 NA genomic_DNA NA RHA1 NA Rhodococcus_sp._IFO16295 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 101510 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Nocardiaceae,_Rhodococcus The_complete_genome_of_Rhodococcus_sp._RHA1_provides_insights_into_a_catabolic_powerhouse NA NC_008268.1 TCACTCGTCGTCCATGGTTTCGCCCAGCGGCTCCTTGAGCGCAATCAGGCAGGCCGTGCTGAGGACGGCGAGGGCAGAGAGGAACCCGGCGATGCCCGCCTTGCCGAAGGCGTCGACCAACCGGTCGGCGAGGAGCAGGGGCACGGCACCGCCGAGGATGCCGGCCAGGTTGTATGCCATGCCGGCACCGCTGTAGCGGTAGCGGGCATGGAACAGCTCGGGCAGGTAGGCGGCGGCCGGACCGTAGGGGATGCCGAGGGTGATCATCAGCACCGCCATCGCGATGAAGAACGAGACCGCGTTGCCGGGCTGCATGACCGCGAAGGCGAGCGGTCCGGCGACGATGCCGAAGCAGGTGCCGGTGAGCAGGACTGCACGGCGCCCGAACCGGTCGGACAGGATCGCCGACGCGACGACGACAACGCACATGACAAGGGCAGCAAGGATATTGACCACGAGAATCGACCGCTGAGGCAGACCGAGGACGCCGACCTCCGGCGCGGCGCTGGCATAGCCGGTGAGGAAGACGATCGAGATATAGAAACAGCCGAATGTCATCGACAGCATGCCACCGCCGAGCAGAATCTGCCGCCACTGATCGCGGATCGCGTCGAGGAACGGGAGCTTGAGCTGCTGCCGACCCTCCACGACCTTGGTGAACGACGGCGTCTCGGCAATATTGAGTCGGACCCACAGGCCCACGCAGACGAGCACGGCACTGATCAGGAACGGAATCCGCCAACCCCACGCCGCAAACGCGGCACCGCTCATGGTCAAGGAGGTCAGCAGGAAGGTCGCACTCGACAGCGCGACGCCGATCCCGGGGCCGAGCTGCGGGAACATGCTGTACTTCCCGCGCTCGCCGGAGTCGGCGTATTCCGACGTCAGCAGCGCCGCTCCCGCCCACTCGCCGCCGAGCGCAAGGCCCTGCAGAACGCGCAGAAACACGAGCATCAACGGCGCGGCAACTCCGATGGCGTCCGCAGTCGGGACCAGACCGATCGCGAAGGTCGAGCCGCCCATGACAACCAGGCTGGTGACCAGCGTGCGCTTGCGGCCCAGCCGATCTCCGTAGTGTCCGAACACGATCGCGCCCAGCGGGCGCACCACGAACGCAATTCCGAAGGTCGCGATCGCGGCCACGGTCGCCGCGCCCGGACCGAGCGAAGGAAAGAACAGCGGGCCGAACACGAGAGCCGCTGCGGTGCCATAGATCAGGAAGTCGTAGAACTCGATCGTCGTACCGACCAACGAGGCCGCAGCGATGCGAGCCATCGGACGTCGGAGGGCGGAAGACTGCCCCGGGGCCGCGCCCCTGCTGGTTCTAGTCGTCAT > 968 RPD_0835 NA general_substrate_transporter YP_567974.1 11 MSTYAATQVRSSGMTKDERFVIVASSLGTVFEWYDFYLYGSLAAIIGAQFFSAYPPATRDIFALLAFAAGFLVRPFGAIVFGRVGDIVGRKYTFLVTILIMGLSTFIVGLLPNAATIGIAAPIILIGLRLLQGLALGGEYGGAATYVAEHAPPGKRGYYTSFIQTTATLGLFLSLMVILFTRTILGEAAFADWGWRVPFLVSVVLLGVSVWIRLRLNESPVFQKMKDEGKSSKAPLTEAFANWGNAKIVLIALFGAVMGQGVVWYTGQFYALFFLQSILKVDGYTSNLLIAWSLLLGTFFFIVFGWLSDKIGRKPIILTGCAIAALSFFPIFKAITSNANPALERAIETVKVEVVSDPALCGDLFNPVGTRVFTAPCDTARAYLSQSSVKYSTTNGPAGSGVKVLVNGTEVPYTDAKTSNPQVLATIQAAGYPKAGNSEIIKMSNPFDIFRPQVMAVIGLLFVLVLFVTMVYGPIAAMLVELFPTRIRYTSMSLPYHIGNGWFGGLLPATAFAIVASTGDIYAGLWYPIIFASITVVIGLIFLPETKHVDISKT alpha_subgroup Rhodopseudomonas_palustris_BisB5 Rhodopseudomonas_palustris_BisB5 NC_007958 935891..937555 Oda,Y.,_Larimer,F.W.,_Chain,P.S.,_Malfatti,S.,_Shin,M.V.,_Vergez,L.M.,_Hauser,L.,_Land,M.L.,_Braatsch,S.,_Beatty,J.T.,_Pelletier,D.A.,_Schaefer,A.L._and_Harwood,C.S. NA 0:1665 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000283.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4000372Source_DNA_and_bacteria_available_from_Caroline_S._Harwood(csh5@u.washington.edu)Contacts:_Caroline_S._Harwood_(csh5@u.washington.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 23-JAN-2012 Rhodopseudomonas_palustris_BisB5_chromosome,_complete_genome. NA alpha-2_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhodopseudomonas_palustris_Q13CW6_RHOPS.gb Rhodopseudomonas_Kluyver_and_van_Niel_1937_(sic) 91974482 Proc._Natl._Acad._Sci._U.S.A._105_(47),_18543-18548_(2008) NA NC_007958 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives 19020098 1665 NA genomic_DNA NA BisB5 NA Rhodovibrio_parvus NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 316057 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Bradyrhizobiaceae,_Rhodopseudomonas Multiple_genome_sequences_reveal_adaptations_of_a_phototrophic_bacterium_to_sediment_microenvironments NA NC_007958.1 TCAGGTTTTGCTGATATCGACGTGTTTGGTCTCTGGCAGGAAGATCAGGCCGATCACGACGGTGATCGACGCGAAGATGATCGGGTACCAGAGGCCGGCGTAGATATCGCCGGTCGAGGCCACGATCGCGAAGGCGGTCGCGGGCAGCAGGCCACCGAACCAGCCGTTGCCGATGTGGTAGGGCAGCGACATCGAGGTGTAGCGGATGCGGGTCGGGAATAGTTCGACCAGCATCGCCGCGATCGGCCCGTAAACCATGGTGACGAACAGCACCAGGACGAACAGCAGCCCGATCACCGCCATCACTTGCGGGCGGAAGATGTCGAATGGGTTCGACATCTTGATGATTTCAGAATTTCCCGCCTTCGGATAGCCGGCCGCCTGGATCGTCGCCAGCACCTGCGGATTGGACGTTTTGGCGTCGGTGTAGGGCACTTCCGTGCCGTTCACGAGCACCTTGACGCCGGAGCCGGCCGGGCCGTTGGTGGTCGAGTACTTGACCGAGGATTGCGACAGGTAGGCGCGGGCGGTGTCGCACGGGGCGGTGAAGACGCGGGTGCCGACCGGGTTGAACAGGTCGCCGCACAGCGCCGGATCCGACACCACCTCGACCTTGACGGTCTCGATGGCCCTTTCCAGCGCCGGGTTGGCGTTGGAGGTGATCGCCTTGAAGATCGGGAAGAACGACAGCGCAGCGATCGCGCAGCCGGTGAGGATGATCGGCTTGCGACCGATCTTGTCGGACAGCCAACCGAACACGATGAAGAAGAAGGTGCCGAGCAGCAGCGACCAGGCGATCAGCAGGTTCGAGGTGTAGCCGTCGACCTTCAGGATCGATTGCAGGAAGAACAGCGCGTAGAACTGGCCGGTGTACCAGACCACGCCCTGACCCATCACGGCGCCGAACAGTGCGATCAGCACGATCTTGGCGTTGCCCCAGTTCGCAAAGGCTTCGGTCAACGGCGCCTTCGAGCTCTTGCCCTCGTCCTTCATCTTCTGGAACACGGGAGATTCGTTCAGCCGCAGCCGGATCCAGACCGAAACGCCGAGCAGCACGACCGACACCAGGAACGGAACACGCCAGCCCCAATCCGCGAACGCGGCTTCGCCGAGAATCGTGCGGGTGAACAGGATCACCATCAGCGACAGGAATAGTCCGAGTGTTGCCGTGGTCTGGATGAACGACGTGTAGTAGCCGCGTTTGCCGGGAGGTGCGTGCTCGGCCACATAGGTCGCCGCGCCGCCATATTCACCGCCGAGCGCGAGGCCCTGCAGCAGGCGCAGACCGATCAGGATAATCGGCGCCGCGATGCCGATCGTCGCCGCATTGGGCAGCAGGCCGACGATGAACGTCGACAGGCCCATGATCAGAATGGTGACGAGGAAGGTGTATTTACGGCCGACGATGTCGCCGACACGACCGAACACGATGGCGCCGAACGGGCGCACGAGAAAGCCGGCGGCGAAGGCCAGAAGCGCGAAGATGTCGCGCGTCGCAGGCGGATAGGCACTGAAGAATTGCGCGCCGATAATGGCTGCGAGCGATCCGTACAGATAGAAATCGTACCACTCAAAAACGGTACCGAGCGACGATGCGACAATGACGAAACGTTCGTCCTTCGTCATTCCGCTGGACCGCACCTGCGTCGCGGCATAGGTGGACAT > 969 Rru_A3159 NA general_substrate_transporter YP_428241.1 11 MASLVGTTIEFYDFYVYATAAVLVFPHLFFPAGNEKTALLASFAVFGAAMGARPLGAVFFGHLGDKRGRKITLVGALLTMGIATFLIGVLPTYASVGWIAPAMLVVLRLAQGFALGGEWSGAALVATENAPAGKRAIFGTFPQLGAPIGFIIANGLFLIIAVLLPSSDPSKPSEAFLDWGWRIPFLFSAVMVIFGLWVRLHLVESTAFEKTVKKGAVHSVPLVAVFRTHGKELVLGTFYMLATYVLFYLMTTFSLSYGRASATAALPGLGYDYRTFVLMMIAGVVFFGLFTLLSGPWAERWGRRKTLIGITLGIVVFGFLWVPMLGAGFVGVMAWLILGFTLMGMTFGPMGALLPELFPANIRYTGSGISYNVSSILGAALAPFVAVALWSAGDGSPFWVGIYLSGMASLTLLALVLGKETKDIDIEA alpha_subgroup Rhodospirillum_rubrum_ATCC_11170 Rhodospirillum_rubrum_ATCC_11170 NC_007643 3650114..3651400 Munk,A.C.,_Copeland,A.,_Lucas,S.,_Lapidus,A.,_Del_Rio,T.G.,_Barry,K.,_Detter,J.C.,_Hammon,N.,_Israni,S.,_Pitluck,S.,_Brettin,T.,_Bruce,D.,_Han,C.,_Tapia,R.,_Gilna,P.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Kyrpides,N.C.,_Mavromatis,K.,_Richardson,P.,_Rohde,M.,_Goker,M.,_Klenk,H.P.,_Zhang,Y.,_Roberts,G.P.,_Reslewic,S._and_Schwartz,D.C. NA 0:1287 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000230.URL_--_http://www.jgi.doe.govSource_DNA_available_from_Gary_Roberts_(groberts@bact.wisc.edu)Bacteria_available_from_ATCC:_ATCC_11170Contacts:_Gary_Roberts_(groberts@bact.wisc.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 21-JAN-2012 Rhodospirillum_rubrum_ATCC_11170_chromosome,_complete_genome. NA purple_nonsulfur_bacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rhodospirillum_rubrum_Q2RPJ1_RHORT.gb Rhodospirillum_Molisch_1907_(Approved_Lists_1980)_emend._Imhoff_et_al._1998 83591340 Stand_Genomic_Sci_4_(3),_293-302_(2011) NA NC_007643 NA NA Rhodospirillales_Pfennig_and_Truper_1971 purple_photosynthetic_bacteria_and_relatives 21886856 1287 NA genomic_DNA NA ATCC_11170 NA Spirillum_rubrum NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 269796 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodospirillales,_Rhodospirillaceae,_Rhodospirillum Complete_genome_sequence_of_Rhodospirillum_rubrum_type_strain_(S1) NA NC_007643.1 CTAAGCCTCGATATCGATATCCTTGGTTTCCTTGCCCAACACCAGGGCGAGCAAGGTCAGGCTGGCCATGCCCGACAGATAGATGCCCACCCAGAACGGGCTGCCATCGCCGGCGCTCCACAGGGCGACGGCGACGAAGGGGGCCAAGGCCGCGCCGAGGATCGACGAGACATTGTAAGAGATGCCCGATCCGGTATAGCGGATATTGGCCGGGAACAATTCGGGCAGCAAAGCGCCCATCGGGCCGAAGGTCATGCCCATCAGCGTGAAGCCAAGGATCAGCCAAGCCATCACCCCGACGAAGCCGGCGCCCAGCATCGGCACCCACAGGAAGCCGAACACGACGATGCCAAGGGTGATGCCGATCAGCGTCTTGCGCCGCCCCCAGCGCTCGGCCCAGGGGCCCGACAGCAGGGTGAAGAGGCCGAAGAACACCACGCCGGCGATCATCATCAGAACGAAGGTCCGGTAATCATAGCCCAGCCCGGGCAGGGCCGCCGTGGCCGAGGCGCGGCCATAGCTGAGAGAAAACGTCGTCATCAAATAGAACAGAACATAGGTCGCCAGCATGTAGAAGGTGCCGAGCACCAGTTCCTTGCCATGGGTTCGAAACACCGCCACCAGCGGCACGCTGTGAACCGCGCCCTTTTTCACGGTCTTCTCAAACGCGGTGCTTTCAACCAGATGCAGGCGCACCCACAAACCGAAGATAACCATCACCGCCGAGAACAGGAAGGGGATGCGCCAGCCCCAATCAAGGAAGGCCTCCGACGGCTTGGACGGATCGCTTGAGGGCAGCAGCACGGCGATGATCAGGAACAGGCCGTTGGCGATGATGAAGCCGATCGGCGCGCCAAGCTGGGGGAAGGTGCCAAAGATCGCCCGCTTGCCAGCCGGGGCGTTCTCCGTCGCCACCAGGGCGGCGCCGCTCCACTCGCCGCCCAAGGCGAAGCCCTGGGCCAGACGCAGCACCACCAGCATGGCCGGGGCGATCCAGCCAACCGAGGCATAGGTCGGCAGCACGCCGATCAGGAAAGTGGCGATGCCCATGGTCAACAAGGCGCCGACCAGGGTGATCTTGCGGCCGCGCTTGTCGCCAAGATGGCCAAAAAACACCGCGCCAAGCGGCCGAGCGCCCATCGCCGCGCCGAACACCGCGAAAGAGGCCAGCAGCGCCGTCTTTTCGTTGCCCGCCGGAAAGAAGAGATGGGGAAACACCAGCACCGCCGCCGTGGCGTAAACGTAGAAGTCATAGAACTCGATGGTGGTGCCGACCAGACTGGCCAT > 970 A1I_06570 COG0477_Permeases_of_the_major_facilitator_superfamily hypothetical_protein YP_001496667.1 11 MLKNDTYKENLNANIRDSLLQDIREVIEYKKNDITYGLLTGSFGIHNYRMQDINSFIFDEIAKKYRNNKDEFKKGISFIKENAHLYAPLIDHDKTKFSNLVHDDCYQELTEIIGMTPEEYLNSL alpha_subgroup Rickettsia_bellii_OSU_85-389 Rickettsia_bellii_OSU_85-389 NC_009883 1255302..1256576 Madan,A.,_Lee,H.,_Madan,A.,_Yoon,J.-G.,_Ryu,G.-Y.,_Dasch,G._and_Ereemeva,M. NA 1261:>1275 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000849.Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation.COMPLETENESS:_full_length. NA 25-JAN-2012 Rickettsia_bellii_OSU_85-389_chromosome,_complete_genome. NA Rickettsiaceae_Pinkerton_1936_(Approved_Lists_1980)_emend._Dumler_et_al._2001 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rickettsia_bellii_A8GXM9_RICB8.gb Rickettsia_da_Rocha-Lima_1916 157826385 Unpublished NA NC_009883 NA NA rickettsias purple_photosynthetic_bacteria_and_relatives NA 1275 NA genomic_DNA 391896 OSU_85-389 NA Rickettsia_bellii_Philip_et_al._1983 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 391896 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rickettsiales,_Rickettsiaceae,_Rickettsieae,_Rickettsia,_belli_group Complete_genome_sequencing_of_Rickettsia_bellii NA NC_009883.1 ATGAAAAACTCCTTAAATAAAAGAGACATCTCAATATTAATCGGTAATGCATTAGATCATTTTGATACCGTGCTTTATGGATTTCTCGCTCCACTTCTTGCCGGCATTTTCTTCCCGAATCACGATAAAATAGTAGCGTTAATTTTAACTTATAGCGTTCTTGCTACTTCCCTATTTACTCGCCCTATAGGTTCTTATTTTTTTGGAGTAATTGCTAAAAAATATGGTGGAGTTTTTGCATTATCTCACTCTTTAATCGGCGTTGCTTTAACCACTGCTTTAATAGGATTGATACCCTCACATGCTCAAATAGGCTGGCTTGCACCGCTATTATTAGTCGTAATTAGGACTATGCAGGGTATATATTCTGAAGGAGAATGTGCTATTGCTAAGTTATTTATTTTAGAGAATAAAGAAGGAAAAAAAGCCTTTAAAGCTTCTTACCTTTATAATACCTCTACCATGTTTGGGATTATCTTCGCATCTTATATCAGTACTATAGTTTTAAATACTGATTATAACGGTTACTGGCGGGTATGCTTTATATTTGGCGGACTTACTGCACTTGTCGGTTATTTTTTAAGGAAGAGCGAAATGTCATTGCGAGCGACTAAAAGGAGCGTGGCAATCTCATTTCATTATCCCGAGATTGCTTTGTCAAAACTTGCAGTTTTTCCTCGCAATGACATAATAAATAACCTACTCACAATATGGAATAATAAGCTAAATATCATACGAATCAGCTTTGCCGTAGGCTTTTCATATATGACCTACATAGTGCCATTCGTCTTTATGAATAGCTTTATTCCTCTCATTACTGATATTTCCTTAGAAACAATGATGAAGTTTAATACGGAATTTCTGATTTTTGATATGATTATGATTCCAGTAATCGGGAATCTAACCAAAAAATTTCATTATCTTAAAATATTAAGAGGCACTCTTATATTAATGATTTTAAGCTTAATTCCCCTATGGTGGTTTTTAAATAACTCATCAATATGGTATGTTAATTTTGTTCGCATATTTATTATATTAGCCGGAGTTAGCTTTCTTGCCCCATTAAATTGCTGGCTAAATGATCTGTTTAAAACTGCCGATAAATATATGCTAGTTGGTATCGGCAGTAGCATCGGCTCTTCACTAATCGGACGGCTTGCTCCCTCCACATGTTTAATGCTCTGGCATATCACAAATAGCAGTATATCGATTGCGGTTTATATAGTCGCAATATCGCTAATAGCTTTGTGGTGTGTTAAACCTAAAGTGAATTGA > 971 NA NA ProP2_protein CAC33636.1 11 MLGYEKEQRSLNTEQKQAVGLLSIGTFLEYFDLMLYVHMAVLLNNLFFPEYDPFTFSLLTAFSFCSTYLLRPIGALIFGYIGDHFGRKIVVVLTTLLMAITCVIIGSMPTYAQIGITASWVLTICRIIQGMSATAEARGAELYLTENSSPPIQYPLVTIITVFSAVGTTVALGIASIFTNQNIYHHESSWRIAFFVGATIAFVGTIARTSLKEADAFSNKRNKLKLRLQENNIMLEEIDKDILDQKVPNTTSIWYFFIQCARPPCFYFVYIYCGDILKRECGFTPSQIINQNFWVSIIDLLGIIGLAFISYKIHPLKILKVKLYLFFTSLIFFPIMLNYNPTPLYIFIFQCLAALFVFDHVPAAPIFYKYFPVFKRFTYTSMLSAIAKLFTYIITSFGLVYITNYLGYWGLFLIFIPVGITFFMGVTYFEKMETNRNL alpha_subgroup Rickettsia_montanensis Rickettsia_montanensis AJ293324 10145..11461 Andersson,J.O._and_Andersson,S.G. NA 0:1317 NA NA 15-APR-2005 Rickettsia_montanensis_hisS_gene_(partial),_tolQ_gene,_tolR_gene,_rp311_gene,_spoTa_gene,_proP2_gene,_aprE_gene_(partial),_abcT4_gene,_forfE1_gene,_forfE2_gene,_forfE3_gene,_ORFE4_and_forfE5_gene. NA Rickettsiaceae_Pinkerton_1936_(Approved_Lists_1980)_emend._Dumler_et_al._2001 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rickettsia_montana_Q9AKL8_RICMO.gb Rickettsia_da_Rocha-Lima_1916 13235470 Mol._Biol._Evol._18_(5),_829-839_(2001) NA AJ293324 NA NA rickettsias purple_photosynthetic_bacteria_and_relatives 11319266 1317 NA genomic_DNA NA NA NA Rickettsia_montanensis_corrig._(ex_Lackman_et_al._1965)_Weiss_and_Moulder_1984 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 33991 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rickettsiales,_Rickettsiaceae,_Rickettsieae,_Rickettsia,_spotted_fever_group Pseudogenes,_junk_DNA,_and_the_dynamics_of_Rickettsia_genomes NA AJ293324.1 TTATAAATTTCGATTCGTTTCCATTTTCTCAAAATAAGTTACTCCCATAAAGAAAGTTATACCTACCGGAATGAAAATTAAAAATAATCCCCAATATCCTAGATAATTGGTAATATAAACTAAACCAAATGACGTTATAATATAAGTAAATAATTTTGCTATTGCACTTAGCATACTAGTATATGTAAATCTCTTAAAAACCGGAAAATATTTATAAAATATAGGAGCTGCTGGTACGTGATCAAATACGAATAATGCAGCTAAACATTGAAAAATAAAAATATATAAAGGAGTAGGGTTATAATTTAACATTATAGGAAAAAAAATGAGAGAGGTAAAAAATAGATATAATTTTACCTTTAGGATTTTTAAAGGATGGATTTTATAGCTAATAAATGCAAGACCGATAATACCGAGTAAATCTATTATAGATACCCAAAAATTTTGATTTATAATTTGACTTGGAGTAAATCCGCATTCTCTTTTTAATATATCACCGCAATATATATATACGAAATAAAAACACGGTGGTCTAGCACACTGGATAAAGAAATACCAAATAGAAGTGGTGTTTGGAACTTTTTGATCTAGAATATCTTTGTCAATTTCTTCAAGCATAATATTATTTTCTTGAAGTCTTAGTTTTAATTTGTTTCTTTTATTTGAAAATGCATCTGCTTCTTTTAAACTAGTCCTTGCAATAGTACCTACAAAAGCGATAGTTGCACCAACGAAAAAGGCTATACGCCAACTTGATTCATGGTGATAAATATTTTGATTAGTAAAAATTGATGCAATACCTAGTGCTACCGTAGTGCCTACGGCAGAAAATACAGTTATAATTGTGACTAATGGATATTGTATAGGAGGAGATGAATTTTCGGTTAAGTACAGCTCTGCACCTCGTGCTTCTGCAGTTGCTGACATACCTTGAATTATACGACATATAGTAAGAACCCAAGAGGCTGTTATACCTATCTGTGCATATGTTGGCATGCTGCCTATAATCACACAAGTAATAGCCATTAATAGGGTAGTTAAAACAACTACAATCTTACGTCCAAAATGATCGCCTATATACCCAAATATTAATGCTCCTATAGGTCTTAGCAAATAGGTAGAACAGAAAGAAAAGGCAGTAAGCAACGAAAAAGTGAAAGGATCATATTCCGGAAAAAATAAATTATTTAAAAGCACCGCCATATGCACATAAAGCATAAGGTCAAAATACTCTAGAAATGTACCTATAGAAAGTAATCCGACTGCTTGTTTTTGTTCTGTATTTAAACTTCTTTGTTCCTTCTCGTAGCCTAACAT > 972 rpr22_CDS075 NA Proline/betaine_transporter ADE29589.1 11 MNRSKLVFSSSIANTFEWYDYVLFSYFAPIIGVKFFPNDDVNTSLLHVFSVFAIGYLARPLGGIFFGVIGDRFGRKVALTSALFCMSAPTVLIGILPTYNTIGITATIVMICVRILQGLSMGGALTGSISFVIEHTSHKYRGFICSIAMSSICSGLLFGSIVFYIVKNMLTASQFDNFGWRIPFLIGVFIIFAAFYIKKNTHETPSFTNLRDQQKILHSPLKKVIINHWLDILISIFINAPGSIIFYLATIYLVSFLKISRNFTENEINNLASICYVIMMVVTLLSGYLSDIIGRKKIFLINLIIIIVTMPFLLKNFENGDFTSVIISQFILTILAASYIGPEPALQAEFYPTNIRNTALSISYNTATSIFGGTTPLIFEYLVQQTGHVTFAVFYVILSCIFALFALSFYKDRSLDNI alpha_subgroup Rickettsia_prowazekii_Rp22 Rickettsia_prowazekii_Rp22 CP001584 86669..87925 Bechah,Y.,_El_Karkouri,K.,_Mediannikov,O.,_Leroy,Q.,_Pelletier,N.,_Robert,C.,_Medigue,C.,_Mege,J.L._and_Raoult,D. NA 0:1257 Source_DNA_available_from_the_Unite_des_Rickettsies_Collection(didier.raoult@gmail.com). NA 13-MAY-2010 Rickettsia_prowazekii_Rp22,_complete_genome. NA Rickettsiaceae_Pinkerton_1936_(Approved_Lists_1980)_emend._Dumler_et_al._2001 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rickettsia_prowazekii_D5AW00_RICPP.gb Rickettsia_da_Rocha-Lima_1916 292571598 Genome_Res._20_(5),_655-663_(2010) NA CP001584 NA NA rickettsias purple_photosynthetic_bacteria_and_relatives 20368341 1257 NA genomic_DNA NA Rp22 NA Rickettsia_prowazekii_da_Rocha-Lima_1916 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 449216 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rickettsiales,_Rickettsiaceae,_Rickettsieae,_Rickettsia,_typhus_group Genomic,_proteomic,_and_transcriptomic_analysis_of_virulent_and_avirulent_Rickettsia_prowazekii_reveals_its_adaptive_mutation_capabilities NA CP001584.1 ATGAATCGCAGTAAGCTAGTATTTTCAAGCAGTATAGCTAATACTTTTGAATGGTATGATTATGTATTATTTAGTTATTTTGCGCCAATAATAGGAGTAAAATTTTTCCCGAATGATGATGTGAATACTTCTTTATTACACGTTTTTTCTGTATTTGCTATAGGTTATTTAGCAAGACCGTTGGGCGGCATATTTTTTGGTGTTATCGGTGATAGATTCGGACGCAAAGTAGCCTTAACTAGTGCGTTATTTTGTATGTCTGCCCCAACCGTATTAATAGGAATTTTACCAACTTACAATACTATCGGTATAACTGCAACTATTGTAATGATTTGTGTACGAATTCTACAAGGATTATCAATGGGAGGTGCCTTGACCGGCTCTATTTCCTTTGTTATTGAGCATACTAGCCATAAATACCGAGGTTTCATTTGTAGTATTGCAATGTCTAGTATATGCTCTGGTTTGTTATTTGGCTCTATTGTTTTTTATATCGTAAAGAATATGTTAACAGCTTCACAATTTGATAATTTTGGTTGGAGGATACCTTTTTTGATTGGGGTTTTTATTATTTTTGCAGCATTTTATATTAAAAAAAATACACACGAAACTCCAAGTTTTACAAATCTAAGAGATCAGCAAAAGATTTTACACTCACCATTAAAGAAAGTTATTATAAATCATTGGCTTGATATATTAATCTCAATTTTTATCAATGCGCCTGGTTCGATAATATTTTACCTTGCGACTATTTACTTAGTATCATTTTTAAAAATTAGTCGTAATTTTACTGAAAATGAGATAAATAATCTTGCTAGCATATGTTACGTGATTATGATGGTTGTAACTTTATTAAGCGGTTATCTATCCGATATTATAGGTCGAAAGAAAATTTTTCTAATTAATCTGATAATAATTATTGTAACAATGCCGTTTTTACTTAAAAATTTTGAGAATGGTGATTTCACAAGTGTAATTATTTCACAATTTATACTTACTATACTTGCGGCTAGCTATATTGGTCCTGAACCAGCATTACAAGCAGAATTTTATCCTACAAATATACGTAACACTGCGCTTTCTATTTCATATAATACTGCTACAAGTATTTTTGGTGGCACTACTCCTCTTATTTTTGAGTATTTAGTACAACAAACAGGACATGTAACCTTTGCAGTTTTTTATGTTATATTAAGCTGTATTTTTGCATTATTTGCCTTATCTTTTTACAAAGATAGAAGTTTAGATAATATATGA > 973 TRICHSKD4_1493 NA major_facilitator_transporter EFO32875.1 11 MTVLVASAAAAAGGLLCLLVRLGPFHAKAGAFDPRTIRESWTNKKVRLAYAGYLGHMWELYAMWAWIGVALTASFSLSLSDGEAVSYARVIAFCAIAAGGVACIFGGLIADRVGKENIAIAAMVVSGIGALATALTFGGPVWLTAFCAIIWGAAILPDSAQFSALVADHARPEKAGSLMTFQTALGFALTFFTVQVTPLMANTFGWPLVFAIMAIGPAYGIVAMLQLKRLTEQAPSPS alpha_subgroup Roseibium_sp._TrichSKD4 Roseibium_sp._TrichSKD4 GL476310 157286..158002 Mann,E.,_Barbeau,K.,_Ferriera,S.,_Johnson,J.,_Kravitz,S.,_Beeson,K.,_Sutton,G.,_Rogers,Y.-H.,_Friedman,R.,_Frazier,M._and_Venter,J.C. NA 0:717 With_funding_from_the_Gordon_and_Betty_Moore_Foundation(www.moore.org),_the_J._Craig_Venter_Institute_(www.jcvi.org)_issequencing,_assembling,_and_auto-annotating_the_genomes_ofapproximately_165_marine_microbes._These_microbes_were_contributedby_collaborators_worldwide,_and_embody_an_array_of_physiologicaldiversity,_including_carbon_fixers,_photoautotrophs,photoheterotrophs,_nitrifiers,_and_methanotrophs._This_work_wasdesigned_to_complement_other_ongoing_research_at_JCVI_and_elsewhereto_characterize_the_microbial_biodiversity_of_marine_andterrestrial_environments_through_metagenomics_profiling_ofenvironmental_samples.Please_be_aware_that_the_annotation_is_done_automatically_withlittle_or_no_manual_curation.##Genome-Assembly-Data-START##Assembly_Method_::_CA_v._5.3Genome_Coverage_::_8xSequencing_Technology_::_Sanger##Genome-Assembly-Data-END## NA 28-SEP-2010 Roseibium_sp._TrichSKD4_genomic_scaffold_scf_1119120597011,_whole_genome_shotgun_sequence. NA alpha-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Roseibium_sp_E2CEM1_9RHOB.gb Roseigium 307773502 Submitted_(23-MAR-2010)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA GL476310 NA NA Rhodobacterales purple_photosynthetic_bacteria_and_relatives NA 717 NA genomic_DNA NA TrichSKD4 NA Roseibium_sp._TrichSKD4 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 744980 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodobacterales,_Rhodobacteraceae,_Roseibium Direct_Submission NA GL476310.1 TTAACTTGGAGATGGAGCCTGCTCCGTCAACCGCTTTAGCTGCAGCATAGCAACGATCCCGTAAGCCGGGCCGATTGCCATAATGGCAAAGACCAGTGGCCAGCCGAATGTGTTGGCCATAAGCGGCGTGACCTGCACCGTGAAAAAGGTCAGCGCAAACCCGAGGGCGGTCTGAAAGGTCATCAGGCTGCCTGCCTTCTCCGGTCGGGCATGATCTGCGACAAGGGCCGAAAACTGAGCGGAATCCGGCAAAATTGCCGCTCCCCAGATAATGGCGCAAAACGCTGTTAGCCATACCGGACCGCCGAATGTGAGCGCTGTTGCCAATGCGCCGATGCCGCTCACGACCATCGCTGCAATCGCAATGTTTTCTTTTCCCACCCGGTCGGCGATCAGACCGCCAAAAATGCAGGCGACGCCGCCCGCAGCAATTGCGCAAAAAGCGATGACGCGCGCATATGACACCGCCTCTCCGTCGCTCAAGGAAAGGGAAAAGGAGGCAGTGAGAGCAACGCCGATCCAGGCCCACATGGCATAAAGCTCCCACATGTGGCCTAGATATCCTGCATAGGCTAGACGCACCTTCTTGTTGGTCCAGCTTTCACGGATGGTTCTTGGATCAAAAGCCCCGGCTTTCGCGTGAAACGGGCCAAGACGAACCAGCAGGCAAAGAAGCCCGCCAGCAGCAGCTGCTGCAGAGGCGACGAGGACAGTCAA > 974 RD1_3179 NA MSF_transporter_protein,_permease_component YP_683371.1 11 MEATLESRAKRNVVVLVLAQAVLGAQMPMLFIIGGLAGQSLASNVCFATLPITLIVLGSMVAATPISGIMQRYGRRAGFMVGACAGAAGGAIGAYGLYTASFPIFLLGSFVTGFYMSAHGFYRFAAADTASDEYRPKAISYVMAGGLAAAVIGPQLVKLTADAYVIPFMGTYGAIIVLNVVGSLLFFALDIPTPPAPRADSPAGRTRWQLITTPRIAVAVICATVTYALMNLVMTSTPLAVVGCGYTTGNAADVVTAHVLAMYVPSFFTGHLIARFGTQRIMAIGLFILAVAGGVALAGVALENFFVALILLGLGWNFGFIGATTMLSEEHSVEERGRMQGLNDLILFGGVTLASLSSGGLMNCSGGSPQEGWMAVNIAMVPFIALAGASLIWLMLRPKAQTA alpha_subgroup Roseobacter_denitrificans_OCh_114 Roseobacter_denitrificans_OCh_114 NC_008209 3047233..3048444 Swingley,W.D.,_Sadekar,S.,_Mastrian,S.D.,_Matthies,H.J.,_Hao,J.,_Ramos,H.,_Acharya,C.R.,_Conrad,A.L.,_Taylor,H.L.,_Dejesa,L.C.,_Shah,M.K.,_Ohuallachain,M.E.,_Lince,M.T.,_Blankenship,R.E.,_Beatty,J.T._and_Touchman,J.W. NA 0:1212 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000362.COMPLETENESS:_full_length. NA 25-JAN-2012 Roseobacter_denitrificans_OCh_114_chromosome,_complete_genome. NA alpha-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Roseobacter_denitrificans_Q164A8_ROSDO.gb Roseobacter_Shiba_1991_emend._Martens_et_al._2006 110677421 J._Bacteriol._189_(3),_683-690_(2007) NA NC_008209 NA NA Rhodobacterales purple_photosynthetic_bacteria_and_relatives 17098896 1212 NA genomic_DNA NA OCh_114 NA Roseobacter_denitrificans_Shiba_1991 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 375451 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodobacterales,_Rhodobacteraceae,_Roseobacter The_complete_genome_sequence_of_Roseobacter_denitrificans_reveals_a_mixotrophic_rather_than_photosynthetic_metabolism NA NC_008209.1 ATGGAAGCCACATTGGAAAGCCGCGCAAAGCGCAATGTCGTTGTGCTGGTACTGGCGCAAGCCGTGCTTGGTGCGCAGATGCCCATGCTGTTCATCATCGGTGGGCTGGCCGGGCAATCGCTGGCGTCCAACGTCTGTTTTGCAACCTTGCCGATCACGCTGATCGTGCTCGGCTCGATGGTCGCTGCGACGCCGATTTCCGGCATCATGCAACGATACGGGCGGCGCGCCGGTTTCATGGTCGGGGCCTGTGCAGGGGCGGCGGGCGGTGCCATCGGGGCCTATGGCCTTTACACCGCGTCCTTTCCGATTTTCCTGCTGGGCAGTTTTGTCACCGGTTTTTATATGTCGGCACATGGGTTTTACCGCTTTGCGGCGGCGGATACGGCCTCGGATGAATACCGCCCCAAGGCGATTTCCTACGTGATGGCGGGCGGGTTGGCCGCAGCGGTCATCGGGCCGCAACTGGTCAAACTCACAGCGGACGCCTATGTCATTCCCTTCATGGGCACCTATGGCGCGATCATCGTGTTGAACGTGGTCGGATCGCTGCTGTTTTTCGCCCTTGATATCCCCACACCCCCTGCCCCGCGCGCAGACAGCCCCGCGGGCCGCACAAGATGGCAGTTGATCACAACACCGCGGATCGCGGTGGCGGTCATCTGTGCCACGGTGACCTATGCGCTGATGAACCTTGTGATGACATCCACGCCGCTTGCGGTGGTCGGCTGCGGGTATACGACGGGCAATGCGGCCGATGTGGTCACGGCGCATGTGCTGGCGATGTATGTGCCCTCGTTCTTTACCGGTCACCTGATCGCGCGTTTTGGCACGCAGCGGATCATGGCGATCGGGTTGTTCATTCTGGCGGTTGCCGGTGGCGTGGCCCTTGCGGGTGTGGCGCTTGAGAACTTCTTTGTCGCGCTCATCCTGTTGGGGCTGGGCTGGAATTTCGGCTTTATCGGCGCGACCACGATGCTCTCTGAAGAGCACAGCGTGGAGGAGCGCGGCCGAATGCAGGGATTGAATGACCTGATCCTCTTTGGCGGGGTCACCCTGGCGTCGCTGTCCTCGGGCGGGTTGATGAACTGCTCGGGCGGGTCGCCACAGGAAGGCTGGATGGCGGTCAATATCGCGATGGTCCCGTTCATTGCGCTGGCGGGCGCATCCCTGATCTGGCTGATGCTGCGCCCCAAGGCCCAAACCGCCTGA > 975 Rxyl_2715 PFAM:_General_substrate_transporter_major_facilitator_superfamily_MFS_1;_KEGG:_sco:SCO2889_sugar_transport_protein major_facilitator_transporter YP_645442.1 11 MSEGSAATKTVESAVPARMDRLPWSGWHWLVIAALGITWILDGLEVTIVGNIAAVLTQPESGLDLTEGQVGLAGGIYIAGACTGALFFSYLTDRYGRKRLFLITLAIYLLFTVATAFSWNFWSFAVFRFLAGTGIGGEYSAIYSAIDELIPARVRGQVALAISGSYWGGAAVGSLLSVALLSEVFVSQFYGWRLAFGLGAVLGLCVLLIRRYIPESPRWLATHGRNEEAERVAAGIEERVKREKGLRELPPIDEDEKITIEQRESIGFGPILRAMFLMYPRRTVLGLVLMGTQAFLYNAVLFTYGLILSGYYGVPGGNVGYYLAAFAVGNLCGPLLLGRLFDRVGRVPMISGCYIASGAVLALSAFLFHQRVLDATTLTALWTLMFFFASSAASAAYLTVSEVFPMEIRAMAIALFYAIATGLGGVTGPIIFGQLIGTGDRSNLLVGFIIAGALMLVAAVFEMFLGVRAERRSLESVAAPLTAIEEQTGSA high_GC_Gram+ Rubrobacter_xylanophilus_DSM_9941 Rubrobacter_xylanophilus_DSM_9941 NC_008148 2726847..2728322 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Munk,A.C.,_Brettin,T.,_Bruce,D.,_Han,C.,_Tapia,R.,_Gilna,P.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_da_Costa,M.S.,_Rainey,F.A.,_Empadinhas,N.,_Jolivet,E.,_Battista,J.R._and_Richardson,P. NA 0:1476 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000386.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3436081Source_DNA_available_from_John_R._Battista_(jbattis@lsu.edu)Bacteria_available_from_DSMZ:_DSM_9941Contacts:_John_R._Battista_(jbattis@lsu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 21-JAN-2012 Rubrobacter_xylanophilus_DSM_9941_chromosome,_complete_genome. NA Rubrobacteraceae_Rainey_et_al._1997_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rubrobacter_xylanophilus_Q1ASJ8_RUBXD.gb Rubrobacter_Suzuki_et_al._1989 108802856 Unpublished NA NC_008148 NA NA Rubrobacterales_Rainey_et_al._1997_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1476 NA genomic_DNA NA DSM_9941 NA Rubrobacter_xylanophilus_Carreto_et_al._1996 NA forward Rubrobacteridae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Rubrobacterineae NA NA NA NA NA prokaryotes NA 266117 Bacteria,_Actinobacteria,_Rubrobacteridae,_Rubrobacterales,_Rubrobacterineae,_Rubrobacteraceae,_Rubrobacter Complete_sequence_of_Rubrobacter_xylanophilus_DSM_9941 NA NC_008148.1 TTGAGCGAGGGCAGCGCGGCCACGAAGACCGTAGAGAGCGCCGTACCGGCCAGGATGGACCGGCTCCCGTGGAGCGGGTGGCACTGGCTCGTCATAGCGGCGCTCGGGATAACCTGGATCCTGGACGGCCTCGAGGTGACCATCGTCGGGAACATAGCGGCCGTCCTCACGCAGCCCGAGTCCGGCCTCGACCTCACCGAGGGGCAGGTCGGGCTCGCCGGCGGCATCTACATCGCCGGGGCCTGCACGGGGGCGCTCTTCTTCTCCTACCTCACCGACCGCTACGGGAGAAAGAGGCTCTTCCTGATCACGCTGGCCATCTACCTGCTCTTCACGGTGGCCACCGCCTTCTCGTGGAACTTCTGGAGCTTCGCCGTCTTCCGCTTTCTGGCGGGCACCGGCATCGGCGGGGAGTACTCCGCCATCTACTCGGCCATAGACGAGCTCATCCCGGCCCGGGTGCGGGGCCAGGTCGCGCTGGCCATCAGCGGCTCGTACTGGGGAGGGGCGGCGGTCGGCAGCCTGCTGAGCGTGGCGCTGCTCTCGGAGGTCTTCGTGTCGCAGTTCTACGGCTGGCGGCTCGCCTTCGGGCTCGGGGCCGTGCTGGGCCTGTGCGTGCTCCTGATCCGGCGCTACATCCCCGAGAGCCCGCGCTGGCTGGCCACCCACGGCCGCAACGAGGAGGCCGAGCGCGTGGCCGCGGGCATAGAGGAGCGGGTAAAGCGCGAGAAGGGGCTGCGGGAGCTTCCGCCCATCGACGAGGACGAGAAGATCACCATCGAGCAGCGCGAGAGCATCGGGTTCGGCCCCATACTGCGGGCGATGTTCCTGATGTACCCCAGGCGCACGGTGCTGGGGCTCGTGCTGATGGGCACCCAGGCCTTTCTGTACAACGCCGTGCTCTTCACCTACGGCCTGATCCTGAGCGGCTACTACGGGGTGCCGGGCGGGAACGTCGGCTACTACCTGGCGGCCTTCGCCGTCGGCAACCTGTGCGGCCCGCTGCTTCTGGGCCGGCTCTTCGACCGGGTGGGGCGGGTGCCCATGATCTCGGGCTGCTACATAGCCTCCGGGGCCGTGCTCGCCCTCTCGGCCTTTCTGTTCCACCAGCGGGTGCTCGACGCCACCACCCTCACGGCGCTGTGGACCCTCATGTTCTTCTTCGCCTCCTCGGCGGCCAGCGCCGCCTACCTCACGGTGAGCGAGGTCTTCCCGATGGAGATCCGGGCCATGGCCATCGCCCTCTTCTACGCGATAGCCACCGGGCTCGGCGGGGTCACCGGCCCGATCATCTTCGGCCAGCTCATCGGCACCGGCGACCGGTCGAACCTGCTCGTCGGGTTCATCATCGCCGGGGCGCTGATGCTCGTGGCGGCAGTCTTCGAGATGTTCCTCGGGGTGCGGGCGGAGCGGCGCTCCCTGGAGAGCGTGGCGGCCCCCCTCACCGCGATAGAAGAGCAGACGGGGTCGGCGTAG > 976 Rxyl_1875 PFAM:_General_substrate_transporter_major_facilitator_superfamily_MFS_1;_KEGG:_dra:DRA0271_sugar_transporter,_putative major_facilitator_transporter YP_644637.1 11 MSAGNGTMTVQEAIDRIGFGRFQKRLLAVCGVTWVADSAEILMLGFALPSIIAEFAISPAQAGLIATATFAGMLVGAWFWGTVSDYIGRRTGFQLTVLTFAVFGLLSAFAPSWEWLAVLRFITGFGLGGALPLDFSVYAEFLPSENRGRNLVILESFWAVGTILAAGLAWLLVPSFGWRPLLAASALAALLVLWIRKSIPESPRFLAISGRADEAKEILTGIAAENGRPAPEQTLVAGERQGGVTVTRLWVPGIRRSTLMLWIAWFCVALAYYGIFTWLPSTFAEQGFSPLRTYQSTFILALAQLPGYFSAAYLIERIGRRNTLGLYLLASGVFTFLFATASGFGWILTASILMSFFSLGAWGALYAWTPELYPTEIRATGMGWASGMSRIAGVFAPILGGILFGLATTAGGSLLYVLSLWSASFIVGGIVVFLLGVETKRRALSDTVSDSSEEVAKEV high_GC_Gram+ Rubrobacter_xylanophilus_DSM_9941 Rubrobacter_xylanophilus_DSM_9941 NC_008148 1901726..1903105 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Munk,A.C.,_Brettin,T.,_Bruce,D.,_Han,C.,_Tapia,R.,_Gilna,P.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_da_Costa,M.S.,_Rainey,F.A.,_Empadinhas,N.,_Jolivet,E.,_Battista,J.R._and_Richardson,P. NA 0:1380 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000386.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3436081Source_DNA_available_from_John_R._Battista_(jbattis@lsu.edu)Bacteria_available_from_DSMZ:_DSM_9941Contacts:_John_R._Battista_(jbattis@lsu.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 21-JAN-2012 Rubrobacter_xylanophilus_DSM_9941_chromosome,_complete_genome. NA Rubrobacteraceae_Rainey_et_al._1997_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Rubrobacter_xylanophilus_Q1AUV3_RUBXD.gb Rubrobacter_Suzuki_et_al._1989 108802856 Unpublished NA NC_008148 NA NA Rubrobacterales_Rainey_et_al._1997_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1380 NA genomic_DNA NA DSM_9941 NA Rubrobacter_xylanophilus_Carreto_et_al._1996 NA complement Rubrobacteridae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Rubrobacterineae NA NA NA NA NA prokaryotes NA 266117 Bacteria,_Actinobacteria,_Rubrobacteridae,_Rubrobacterales,_Rubrobacterineae,_Rubrobacteraceae,_Rubrobacter Complete_sequence_of_Rubrobacter_xylanophilus_DSM_9941 NA NC_008148.1 CTACACCTCTTTAGCGACCTCCTCCGAAGAGTCGGAGACGGTATCGGACAAGGCTCGCCTCTTCGTCTCGACGCCGAGCAGGAAGACCACGATCCCTCCCACTATGAAGGAGGCGGACCACAGGGAGAGGACGTATAGCAGGGAGCCGCCCGCCGTCGTCGCGAGACCGAACAATATACCCCCGAGGATCGGGGCGAAGACGCCAGCGATCCTAGACATGCCGCTCGCCCACCCCATGCCGGTAGCACGGATCTCGGTCGGGTAGAGCTCGGGCGTCCACGCGTAGAGCGCCCCCCAGGCCCCCAAAGAGAAGAAGCTCATCAGGATGGAGGCGGTGAGTATCCAACCGAAGCCTGATGCGGTAGCGAATAGAAAGGTGAACACGCCGCTCGCCAGGAGGTAGAGACCAAGGGTGTTCCGCCGGCCTATGCGTTCGATCAGGTACGCGGCAGAAAAGTACCCTGGCAACTGCGCCAGCGCAAGGATGAAGGTACTCTGGTACGTTCGGAGGGGCGAGAAGCCCTGCTCGGCGAAGGTTGAAGGTAGCCATGTGAAGATGCCGTAGTAGGCGAGGGCGACGCAGAACCAGGCGATCCATAACATCAGGGTCGAGCGCCGTATCCCGGGCACCCAGAGCCGCGTAACGGTGACCCCACCCTGCCTTTCACCAGCGACCAGGGTCTGCTCGGGGGCGGGCCGACCATTCTCCGCCGCTATGCCGGTGAGAATTTCTTTGGCCTCATCTGCCCTCCCAGAGATGGCTAGAAAGCGCGGCGACTCCGGTATGCTCTTGCGGATCCAGAGCACCAGTAGCGCCGCTAACGCCGACGCTGCGAGCAGCGGGCGCCAGCCGAAGCTCGGTACAAGGAGCCACGCAAGCCCGGCAGCCAGGATCGTACCGACGGCCCAGAAACTTTCGAGTATGACTAGGTTGCGCCCCCGGTTCTCGCTAGGCAAGAACTCGGCGTAGACCGAGAAATCGAGCGGGAGCGCGCCGCCGAGGCCGAAGCCCGTGATGAAGCGAAGCACCGCCAACCACTCCCAGCTCGGCGCGAAAGCGGACAGCAGTCCGAATACTGCGAAGGTCAGTACCGTCAGCTGAAAGCCCGTGCGCCGACCTATGTAATCTGAAACGGTTCCCCAAAACCAGGCGCCGACCAGCATCCCAGCGAATGTTGCGGTAGCGATCAGACCAGCCTGGGCTGGAGAGATCGCGAACTCGGCGATTATGGAAGGGAGCGCGAATCCTAGCATCAGGATCTCTGCGCTGTCCGCTACCCACGTCACCCCACAAACGGCCAGCAGACGCTTCTGAAACCGACCGAAGCCGATCCGATCGATGGCCTCCTGCACGGTCATCGTTCCGTTCCCAGCGCTCAT > 977 SCY_0507 Maltose_permease,_high-affinity_maltose_transporter_(alpha-glucoside_transporter);_encoded_in_the_MAL3_complex_locus;_member_of_the_12_transmembrane_domain_superfamily_of_sugar_transporters;_functional_in_genomic_reference_strain_S288C;_original_gene_id:YBR298C-dmap maltose_permease EDN64906.1 NA MKGLSSLINRKKDRNDSHLDEIENGVNATEFNSVEMEEQGKKSDFDLSHHEYGPGSLTPNDNNEEVPDLLDEAMQDAKEADESERGMPLMTALKTYPKAAAWSLLVSTTLIQEGYDTAILGSFYALPVFQKKYGSLNSNTGDYEISVSWQIGLCLCYMAGEIVGLQMTGPSVDYMGNRYTLIMALFFLAAFIFILYFCKSLGMIAVGQALCGMPWGCFQCLTVSYASEICPLALRYYLTTYSNLCWAFGQLFAAGIMKNSQNKYANSELGYKLPFALQWIWPLPLAVGIFFAPESPWWLVKKGRIDQARRSLERTLSGKGPEKELLVSMELDKIKTTIEKEQKMSDEGTYWDCVKDGINRRRTRIACLCWIGQCSCGASLIGYSTYFYEKAGVSTDTAFTFSIIQYCLGIAATFISWWASKYCGRFDLYAFGLAFQAIMFFIIGGLGCSDTHGAKMGSGALLMVVAFFYNLGIAPVVFCLVSEIPSSRLRTKTIILARNAYNVIQVVVTVLIMYQLNSEKWNWGAKSGFFWGGFCLATLAWAVVDLPETAGRTFIEINELFRLGVPARKFKSTKVDPFAAAKAAAAEINVKDPKEDLETSVVDEGRSTSSVVNK Saccharomycetes Saccharomyces_cerevisiae_YJM789 Saccharomyces_cerevisiae_YJM789 AAFW02000011 782281..784125 Wei,W.,_McCusker,J.H.,_Hyman,R.W.,_Jones,T.,_Ning,Y.,_Cao,Z.,_Gu,Z.,_Bruno,D.,_Miranda,M.,_Nguyen,M.,_Wilhelmy,J.,_Komp,C.,_Tamse,R.,_Wang,X.,_Jia,P.,_Luedi,P.,_Oefner,P.J.,_David,L.,_Dietrich,F.S.,_Li,Y.,_Davis,R.W._and_Steinmetz,L.M. NA 0:1845 This_version_of_the_project_represents_approximately_98%_coverageof_the_genome.The_mitochondrial_genome_is_GenBank_Accession_Number_EU004203. NA 13-JUL-2007 Saccharomyces_cerevisiae_YJM789_chromosome_2_chrII.Contig282,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_A6ZLN7_YEAS7.gb Saccharomyces 151946293 Proc._Natl._Acad._Sci._U.S.A._104_(31),_12825-12830_(2007) fungi AAFW02000011 maltose_permease NA budding_yeasts sac_fungi 17652520 1845 2 genomic_DNA NA YJM789 NA yeast NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 307796 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Genome_sequencing_and_comparative_analysis_of_Saccharomyces_cerevisiae_strain_YJM789 Saccharomyces_cerevisiae_YJM789 AAFW02000011.1 TCATTTGTTCACAACAGATGAGGTGCTTCGCCCTTCATCTACCACAGAAGTTTCCAAATCTTCCTTCGGATCTTTAACATTAATTTCTGCAGCTGCTGCTTTGGCAGCTGCAAAAGGGTCGACTTTAGTCGACTTGAACTTTCTTGCTGGAACACCAAGTCTAAACAATTCATTTATCTCAATAAAAGTCCTGCCAGCGGTTTCTGGTAAATCGACAACAGCCCAAGCTAAAGTGGCCAGACAAAATCCTCCCCAGAAAAAGCCTGATTTAGCACCCCAATTCCATTTCTCTGAGTTCAATTGGTACATGATCAAAACTGTAACTACAACTTGGATCACATTGTAAGCATTACGAGCCAAAATAATTGTTTTGGTTCTTAGCCTTGAAGACGGTATTTCAGACACTAAGCAAAAAACAACAGGTGCAATACCGAGGTTGTAAAAGAACGCGACAACCATTAGAAGAGCACCACTACCCATTTTAGCGCCATGAGTGTCTGAACATCCTAAACCACCGATAATGAAGAACATAATAGCCTGAAAAGCCAGCCCAAAAGCATAAAGGTCAAATCTGCCACAATATTTTGAAGCCCACCAGGATATAAACGTTGCAGCAATACCAAGACAATATTGGATAATACTGAAAGTAAAAGCCGTATCAGTGCTAACACCAGCTTTTTCATAAAAGTAAGTTGAATAACCAATTAATGATGCACCACAGGAGCATTGACCGATCCAACATAAACAAGCTATTCTCGTTCTTCTCCTGTTAATACCATCTTTCACACAATCCCAGTAAGTTCCTTCATCAGACATTTTCTGCTCCTTTTCTATAGTAGTTTTGATTTTATCGAGTTCCATACTCACTAGTAATTCTTTCTCGGGTCCTTTACCACTTAATGTTCTTTCAAGTGATCTCCTCGCTTGATCAATCCTTCCTTTTTTAACCAGCCACCATGGAGACTCTGGTGCAAAAAAAATACCTACCGCCAAAGGAAGGGGCCAGATCCACTGCAAAGCAAAAGGTAGCTTATATCCTAGTTCTGAGTTGGCATATTTGTTCTGGGAATTTTTCATAATACCAGCAGCGAAAAGTTGACCGAACGCCCAACATAAATTAGAATAAGTCGTCAAATAGTATCTTAGGGCCAAAGGACAAATTTCAGAAGCATAAGAAACGGTCAAACATTGGAAACAACCCCATGGCATACCACACAATGCCTGTCCCACGGCAATCATACCCAAACTCTTGCAAAAATACAGAATGAAAATGAAAGCCGCTAAAAAGAACAACGCCATGATCAGAGTGTAACGGTTGCCCATGTAATCTACAGAAGGCCCAGTCATTTGCAAACCGACAATCTCACCTGCCATGTAGCATAGACATAGACCGATTTGCCAGGAAACTGAAATTTCATAATCTCCTGTATTGCTATTCAAAGAACCATATTTTTTTTGAAAAACAGGCAGGGCATAGAAAGATCCTAGAATGGCTGTGTCATAACCCTCTTGAATCAATGTTGTGGAAACTAATAGTGACCAAGCAGCAGCTTTTGGATATGTCTTCAAAGCTGTCATGAGTGGCATTCCCCTCTCACTTTCATCTGCCTCTTTGGCGTCCTGCATAGCTTCATCGAGAAGGTCGGGGACTTCTTCATTATTATCGTTTGGTGTTAGTGAACCTGGACCGTACTCATGATGGGAAAGATCAAAATCACTTTTCTTACCTTGCTCCTCCATCTCTACCGAGTTGAATTCGGTAGCGTTCACGCCATTCTCGATCTCATCTAAGTGTGAGTCGTTCCTGTCTTTTTTTCTGTTTATTAATGAGGATAATCCCTTCAT > 978 SCY_4912 Hypothetical_protein;_original_gene_id:yorf4.15.007.003 hypothetical_protein EDN64047.1 NA MSGVNNTSANDLSTTDSNSNSAVGAPSVKTEHGDSKDSLNLDATEAPIDLPQKPLSAYTTVAILCLMIAFGGFIFGWDTGTISGFVNLSDFIRRFGQKNDKGTYYLSKVRMGLIVSIFNIGCAIGGIVLSKVGDIYGRRIGLITVTAIYVVGILIQITSINKWYQYFIGRIISGLGVGGIAVLSPMLISEVAPKHIRGTLVQLYQLMGTMGIFLGYCTNYGTKNYHNATQWRVGLGLCLSWATFMVSGMMFVPESPRYLIEVGTDEEAKRPLI Saccharomycetes Saccharomyces_cerevisiae_YJM789 Saccharomyces_cerevisiae_YJM789 AAFW02000026 1529..2350 Wei,W.,_McCusker,J.H.,_Hyman,R.W.,_Jones,T.,_Ning,Y.,_Cao,Z.,_Gu,Z.,_Bruno,D.,_Miranda,M.,_Nguyen,M.,_Wilhelmy,J.,_Komp,C.,_Tamse,R.,_Wang,X.,_Jia,P.,_Luedi,P.,_Oefner,P.J.,_David,L.,_Dietrich,F.S.,_Li,Y.,_Davis,R.W._and_Steinmetz,L.M. NA 0:822 This_version_of_the_project_represents_approximately_98%_coverageof_the_genome.The_mitochondrial_genome_is_GenBank_Accession_Number_EU004203. NA 13-JUL-2007 Saccharomyces_cerevisiae_YJM789_chromosome_15_chrXV.Contig7,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_A6ZN44_YEAS7.gb Saccharomyces 151945808 Proc._Natl._Acad._Sci._U.S.A._104_(31),_12825-12830_(2007) fungi AAFW02000026 hypothetical_protein NA budding_yeasts sac_fungi 17652520 822 15 genomic_DNA NA YJM789 NA yeast NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 307796 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Genome_sequencing_and_comparative_analysis_of_Saccharomyces_cerevisiae_strain_YJM789 Saccharomyces_cerevisiae_YJM789 AAFW02000026.1 ATGTCCGGTGTTAATAATACATCCGCAAATGATTTATCCACTACCGACTCTAACTCTAACTCAGCAGTAGGCGCTCCTTCTGTTAAGACTGAGCACGGTGACTCCAAAGACTCCCTCAACCTTGATGCTACTGAAGCACCTATTGACTTACCTCAAAAACCCCTCTCTGCATATACCACCGTCGCAATCCTGTGTTTGATGATTGCATTTGGCGGCTTCATCTTTGGTTGGGATACCGGTACCATTTCTGGTTTTGTTAACCTTTCTGATTTCATCAGAAGGTTCGGTCAAAAAAATGACAAGGGAACCTACTACTTATCGAAAGTAAGAATGGGTTTGATCGTCTCAATATTCAACATTGGCTGCGCCATAGGAGGAATTGTTTTGTCAAAAGTCGGTGATATATATGGTCGTCGTATTGGATTGATTACAGTTACTGCCATTTACGTCGTAGGCATCCTAATCCAAATAACCTCCATAAACAAGTGGTATCAATATTTCATTGGAAGAATTATTTCTGGCCTAGGAGTGGGAGGCATTGCTGTCCTTTCCCCAATGTTGATATCAGAAGTTGCTCCCAAACATATCAGGGGAACCCTGGTCCAATTGTACCAGCTGATGGGTACGATGGGTATTTTTCTAGGATACTGTACCAATTACGGTACCAAGAACTATCACAACGCCACTCAATGGAGAGTCGGTCTTGGTCTTTGCCTTTCCTGGGCTACATTCATGGTTAGTGGAATGATGTTTGTACCAGAATCACCACGTTACCTGATTGAGGTTGGTACAGATGAGGAAGCGAAACGTCCACTCATCTAA > 979 SCY_0663 Plasma_membrane_permease,_mediates_uptake_of_glycerophosphoinositol_and_glycerophosphocholine_as_sources_of_the_nutrients_inositol_and_phosphate;_expression_and_transport_rate_are_regulated_by_phosphate_and_inositol_availability;_original_gene_id:YCR098C-dmap glycerophosphoinositol_(GroPIns)_permease EDN62209.1 NA MEDKDITSVNEKEVNENTNPRIIKYDAERRATRTETSKKDKWKNIVTIIASGFALISDGYVNGSMSMLNKVFVMEYGKKNYSSKVSTRVSNAALVGIIFGQFFMGIAADYYSRKSCILVATAILVIGSALCAASHGTTVPGMFWMLTVMRGLVGIGVGAEYPTSTLSANESANEYTTTKRGGILVMVTNLPLAFGGPFATIIFLIVYKICSGTKHLEAIWRTVFAIGCFWPLSVFYFRWKTATTEVYEKGRIKRNIPYFLALKFYWKRLLGTCGTWFMYDFVTFPNGIFSSTIISSVIKDQNDLVKVAEWNLLLGVLAVLGVPIGAYLSDRIGRKYTLMFGFSGYIIFGLIIGCAYDQLKKITPLFIIFYAFMNMLGNAGPGDMLGVISSEASATAVRGVFYGLSAVTGKIGSVVGVECFQPIRDNLGARWTFIIAAICGLIGIIITYFFVPHSLESDLMKQDVEFHNYLVSNGWTGKMGFDETDEESMVRTIEVEENGTNCSKKNAEIISVRQVDQS Saccharomycetes Saccharomyces_cerevisiae_YJM789 Saccharomyces_cerevisiae_YJM789 AAFW02000089 277760..279316 Wei,W.,_McCusker,J.H.,_Hyman,R.W.,_Jones,T.,_Ning,Y.,_Cao,Z.,_Gu,Z.,_Bruno,D.,_Miranda,M.,_Nguyen,M.,_Wilhelmy,J.,_Komp,C.,_Tamse,R.,_Wang,X.,_Jia,P.,_Luedi,P.,_Oefner,P.J.,_David,L.,_Dietrich,F.S.,_Li,Y.,_Davis,R.W._and_Steinmetz,L.M. NA 0:1557 This_version_of_the_project_represents_approximately_98%_coverageof_the_genome.The_mitochondrial_genome_is_GenBank_Accession_Number_EU004203. NA 13-JUL-2007 Saccharomyces_cerevisiae_YJM789_chromosome_3_chrIII.Contig85,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_A6ZTS0_YEAS7.gb Saccharomyces 151943771 Proc._Natl._Acad._Sci._U.S.A._104_(31),_12825-12830_(2007) fungi AAFW02000089 glycerophosphoinositol_(GroPIns)_permease NA budding_yeasts sac_fungi 17652520 1557 3 genomic_DNA NA YJM789 NA yeast NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 307796 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Genome_sequencing_and_comparative_analysis_of_Saccharomyces_cerevisiae_strain_YJM789 Saccharomyces_cerevisiae_YJM789 AAFW02000089.1 TCAACTTTGATCGACCTGTCTAACTGAAATTATTTCTGCGTTTTTCTTACTACAATTAGTACCATTCTCTTCAACTTCAATAGTTCTAACCATTGATTCTTCATCTGTCTCATCAAATCCCATCTTACCAGTCCAGCCATTGGATACCAAGTAGTTGTGAAATTCAACGTCTTGCTTCATTAAATCGCTTTCAAGAGAATGTGGAACAAAGAAATATGTAATAATGATACCAATAAGACCACAAATTGCAGCAATAATGAAAGTCCATCTTGCACCTAAATTATCTCTAATGGGTTGGAAACATTCGACGCCTACTACAGAACCGATTTTACCAGTCACAGCAGATAAACCATAGAAAACACCTCTAACAGCGGTTGCTGACGCTTCACTACTAATAACACCAAGCATATCACCTGGTCCAGCATTACCTAACATATTCATGAATGCGTAGAAGATAATAAACAAGGGGGTGATTTTTTTCAATTGGTCGTACGCACATCCAATGATTAGACCAAAGATGATGTACCCAGAGAAACCAAACATCAACGTATATTTACGACCAATACGATCGGACAGATAAGCACCAATTGGTACACCCAGTACAGCTAAAACTCCCAACAGTAAGTTCCACTCTGCCACTTTTACTAAATCATTTTGGTCCTTGATAACGGAACTGATAATTGTTGAACTGAAAATACCATTTGGGAAGGTAACAAAATCATACATAAACCATGTACCACATGTACCGAGTAACCTTTTCCAATAAAATTTCAATGCTAGAAAATATGGTATATTCCTCTTGATTCTACCTTTTTCATAGACTTCTGTAGTAGCAGTCTTCCATCTAAAATAGAACACACTCAATGGCCAGAAGCACCCTATTGCAAAAACAGTCCTCCAGATCGCCTCTAAATGTTTTGTTCCTGAACAGATTTTGTAGACGATTAAAAAGATGATCGTAGCAAATGGACCACCGAAGGCTAGTGGCAAATTTGTCACCATAACCAAGATACCACCTCTTTTGGTAGTGGTATATTCATTAGCAGACTCATTAGCACTTAATGTACTAGTAGGATATTCTGCACCAACACCAATACCTACCAAACCTCTCATAACTGTTAACATCCAAAACATGCCAGGTACAGTAGTACCGTGAGAGGCAGCACACAGAGCACTACCAATAACCAAGATAGCAGTGGCCACAAGGATACAAGATTTTCTACTATAATAATCAGCAGCGATACCCATAAAGAATTGGCCAAAAATAATACCAACTAAGGCTGCGTTGGAAACTCTAGTCGACACTTTTGAGCTATAGTTTTTCTTACCGTACTCCATAACAAAAACCTTGTTTAGCATACTCATTGAACCATTTACGTAACCATCACTTATTAGAGCAAAACCGGACGCAATGATTGTAACTATGTTTTTCCATTTATCTTTCTTTGAGGTTTCAGTACGGGTTGCACGCCTCTCGGCATCATATTTTATTATTCTAGGATTAGTGTTCTCGTTCACTTCCTTCTCATTTACCGATGTGATATCTTTGTCTTCCAT > 980 SCY_0722 Hypothetical_protein;_original_gene_id:yorf4.04.338.062 conserved_protein EDN60164.1 NA MSRSNKPLTQEANSSAHIDRAHQLAQDFNSKQDDTALTSLPHKNPDIFRFENNIMAHSSRRGSLYRDSDATVVLPLSEHTPRLSMDDPYRQLLQQAEISQLRSKKKRHSSRVLRTSFISFVVLVSSLSGLDQGLISGNVMTLSFQKYFHYPLTSPLGNIVSIVNLGAFMASLFVYSGILEPCSRKKMLQISTMIYSLGAIVQVLALNQWCLLLGRFLLGVGMGFAFSMVIIYQFEFPLPCIRKRTLISIQCVSSVIAYSFGIWINCAFRYLGFAWRYPLSTHVALGIILNLMSFYLILESPSWLLKQKNDVEALVLISNVFDDGNFEENQTQLKFRVLKRDILLKSHLQKNSYPYAYILKDFSSIIKLLIGFQLLTRTNGVDAFLYYSPLILQQMGRGERKSIYLTGLNALIYSIVILAYVPLVLRKRKEKTNVLLGSIVMCVLLFTISFTDWFPKSTTRYISILFAVFLFTHFISWDSIGWVMTIELLPHLSQAPVILLVSNFYWIFKWFVSLITPILIDRLSWKFYLIPSLSSFIYIIFVLRIFPIETRDKGLDSDDDSTGNGSGNHDDVFDDTGSEFSSSPSFSAYQINTLGSSIKQNNQAYSSIQNEQILPKNGNLSNQTHGSAQNVYFITSDSGPSRTGEFFSFHNRTDPNISDNIAANKPSSGGGQNSPGDMAVA Saccharomycetes Saccharomyces_cerevisiae_YJM789 Saccharomyces_cerevisiae_YJM789 AAFW02000145 99695..101740 Wei,W.,_McCusker,J.H.,_Hyman,R.W.,_Jones,T.,_Ning,Y.,_Cao,Z.,_Gu,Z.,_Bruno,D.,_Miranda,M.,_Nguyen,M.,_Wilhelmy,J.,_Komp,C.,_Tamse,R.,_Wang,X.,_Jia,P.,_Luedi,P.,_Oefner,P.J.,_David,L.,_Dietrich,F.S.,_Li,Y.,_Davis,R.W._and_Steinmetz,L.M. NA 0:2046 This_version_of_the_project_represents_approximately_98%_coverageof_the_genome.The_mitochondrial_genome_is_GenBank_Accession_Number_EU004203. NA 13-JUL-2007 Saccharomyces_cerevisiae_YJM789_chromosome_4_chrIV.Contig338,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_A6ZXD4_YEAS7.gb Saccharomyces 151941761 Proc._Natl._Acad._Sci._U.S.A._104_(31),_12825-12830_(2007) fungi AAFW02000145 conserved_protein NA budding_yeasts sac_fungi 17652520 2046 4 genomic_DNA NA YJM789 NA yeast NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 307796 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Genome_sequencing_and_comparative_analysis_of_Saccharomyces_cerevisiae_strain_YJM789 Saccharomyces_cerevisiae_YJM789 AAFW02000145.1 CTAGGCAACTGCCATGTCTCCAGGCGAATTCTGGCCCCCACCTGAACTGGGTTTATTCGCAGCAATGTTGTCGCTGATATTTGGATCGGTTCTGTTATGAAAACTGAAAAATTCTCCAGTCCTTGATGGTCCTGAATCAGATGTAATGAAATAAACATTTTGTGCAGAACCGTGTGTCTGGTTCGATAAGTTTCCGTTTTTGGGTAGAATTTGCTCATTTTGAATAGATGAATAGGCTTGATTATTTTGTTTGATACTACTTCCTAGAGTGTTTATCTGATACGCGGAAAAAGATGGTGAGGAGGAGAATTCTGAACCAGTATCGTCAAAAACATCATCATGGTTACCGCTACCATTTCCGGTAGAATCATCATCAGAATCTAATCCTTTGTCACGGGTTTCTATAGGAAAAATCCTTAGCACAAATATAATGTAAATAAAGGAAGATAAAGATGGAATAAGATAAAACTTCCAAGACAGACGGTCAATAAGTATAGGGGTTATTAAGCTGACGAACCACTTAAAAATCCAATAAAAGTTTGAGACTAGTAGTATCACTGGGGCCTGTGACAAGTGAGGTAAAAGCTCAATGGTCATAACCCACCCTATAGAATCCCAACTGATGAAGTGCGTAAAAAGAAAAACAGCAAATAGTATTGATATATACCTCGTTGTGCTCTTGGGAAACCAGTCTGTAAAAGATATGGTAAATAGCAATACACACATCACAATCGAACCTAAGAGTACATTCGTTTTCTCTTTACGTTTCCGTAACACCAAGGGAACATATGCTAATATTACGATGCTGTAAATTAAAGCATTAAGTCCCGTTAAATAGATAGATTTTCTTTCTCCTCTCCCCATTTGTTGTAATATTAACGGTGAGTAATACAAGAAAGCATCCACTCCATTTGTTCGTGTGAGAAGTTGGAAACCTATCAACAATTTTATTATTGAAGAAAAATCCTTTAAGATATACGCATATGGATAGGAGTTTTTTTGAAGGTGTGACTTTAATAATATGTCTCGTTTCAGGACCCTAAATTTCAACTGAGTTTGGTTTTCTTCGAAATTTCCATCATCGAAAACATTCGATATTAAAACCAATGCCTCTACGTCGTTCTTTTGCTTCAACAGCCACGAAGGGGACTCTAAAATAAGATAGAACGACATTAGGTTTAGTATTATTCCAAGTGCCACATGTGTTGACAAAGGGTATCTCCATGCAAAGCCCAAATATCTGAAAGCACAATTAATCCATATTCCGAATGAATACGCAATGACACTAGAGACGCATTGAATGGAAATTAACGTCCGTTTTCTTATACAGGGAAGGGGAAACTCGAATTGATAAATTATTACCATAGAAAAGGCAAAGCCCATACCTACTCCGAGTAAGAATCTACCCAGTAGTAAACACCATTGGTTTAGAGCCAAGACCTGAACAATGGCACCCAAAGAGTATATCATTGTACTTATTTGGAGCATTTTTTTCCTGCTACAAGGCTCCAGGATGCCAGAATAGACAAATAACGACGCCATGAACGCACCTAGATTAACAATGCTCACTATATTGCCCAGCGGAGAAGTAAGTGGGTAATGAAAATACTTCTGGAACGACAAAGTCATAACGTTACCAGATATGAGGCCTTGGTCCAACCCCGACAGCGAGGAAACTAGCACCACAAAAGATATAAACGAAGTACGTAAAACTCGACTGGAATGCCTTTTTTTCTTACTTCGTAGTTGTGAGATTTCAGCCTGTTGTAGTAATTGGCGGTATGGATCATCCATTGATAATCTAGGGGTATGTTCAGAAAGCGGCAAAACCACAGTAGCATCGCTGTCTCTATATAGAGAACCACGACGCGAGCTATGAGCCATGATGTTGTTCTCAAATCTGAATATGTCGGGGTTCTTGTGGGGCAGTGAAGTTAGTGCGGTATCATCCTGTTTACTGTTAAAATCCTGTGCTAGCTGATGTGCCCTATCAATATGCGCCGAACTATTAGCTTCCTGAGTAAGTGGTTTATTTGAACGTGACAT > 981 SCY_1231 High-affinity_glucose_transporter_of_the_major_facilitator_superfamily,_nearly_identical_to_Hxt6p,_expressed_at_high_basal_levels_relative_to_other_HXTs,_expression_repressed_by_high_glucose_levels;_original_gene_id:YDR342C-dmap hexose_transporter EDN60673.1 NA MSQDAAIAEQTPVEHLSAVDSASHSVLSTPSNKAERDEIKAYGEGEEQEPVVEIPKRPASAYVTVSIMCIMIAFGGFVFGWDTGTISGFVNQTDFIRRFGMQHKDGTYYLSKVRTGLIVAIFNIGCAIGGIILAKLGDMYGRKMGLIVVVVIYIIGIIIQIASINKWYQYFIGRIISGLGVGGIAVLSPMLISEVSPKHLRGTLVACYQLMITAGIFLGYCTNYGTKTYSNSVQWRVPLGLGFAWALFMIGGMTFVPESPRYLAEVGKIEEAKRSIAVSNKVAVDDPSVLAEVEAVLAGIEAEKLAGNASWGELFATKNKIFQRLIMGAMIQSLQQLTGDNYFFYYGTTIFKAVGLSDSFETSIVLGIVNFASTFVGIYVVDRYGRRTCLLWGAASMTACMVVYASVGVTRLWPNGQDQPSSKGAGNCMIVFACFYIFCFATTWAPIPFVVNSETFPLRVKSKCMSIAQACNWIWGFLIGFFTPFITGAINFYYGYVFMGCLVFMYFYVLLVVPETKGLTLEEVNTMWEEGVLPWKSASWVPPSRRGANYDAEEMTHDDKPLYKRMFSTK Saccharomycetes Saccharomyces_cerevisiae_YJM789 Saccharomyces_cerevisiae_YJM789 AAFW02000145 1118456..1120168 Wei,W.,_McCusker,J.H.,_Hyman,R.W.,_Jones,T.,_Ning,Y.,_Cao,Z.,_Gu,Z.,_Bruno,D.,_Miranda,M.,_Nguyen,M.,_Wilhelmy,J.,_Komp,C.,_Tamse,R.,_Wang,X.,_Jia,P.,_Luedi,P.,_Oefner,P.J.,_David,L.,_Dietrich,F.S.,_Li,Y.,_Davis,R.W._and_Steinmetz,L.M. NA 0:1713 This_version_of_the_project_represents_approximately_98%_coverageof_the_genome.The_mitochondrial_genome_is_GenBank_Accession_Number_EU004203. NA 13-JUL-2007 Saccharomyces_cerevisiae_YJM789_chromosome_4_chrIV.Contig338,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_A6ZYU3_YEAS7.gb Saccharomyces 151941761 Proc._Natl._Acad._Sci._U.S.A._104_(31),_12825-12830_(2007) fungi AAFW02000145 hexose_transporter NA budding_yeasts sac_fungi 17652520 1713 4 genomic_DNA NA YJM789 NA yeast NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 307796 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Genome_sequencing_and_comparative_analysis_of_Saccharomyces_cerevisiae_strain_YJM789 Saccharomyces_cerevisiae_YJM789 AAFW02000145.1 TTATTTGGTGCTGAACATTCTCTTGTACAATGGCTTGTCATCGTGAGTCATTTCTTCAGCGTCGTAGTTGGCACCTCTTCTGGATGGTGGAACCCATGAGGCAGATTTCCATGGTAGAACACCTTCTTCCCACATGGTGTTGACTTCTTCCAAAGTCAAACCCTTAGTTTCTGGAACAACTAACAAAACGTAGAAATACATGAAGACCAAACAGCCCATGAAAACGTAACCGTAGTAGAAGTTAATAGCACCGGTAATAAATGGAGTGAAGAAACCAATCAAGAAACCCCAGATCCAGTTACAAGCTTGGGCGATAGACATACACTTAGACTTGACTCTCAATGGGAAAGTTTCAGAGTTGACGACAAAAGGAATTGGAGCCCATGTAGTAGCAAAACAGAAAATATAGAAACATGCAAAGACAATCATACAGTTACCAGCACCCTTGGAAGATGGTTGGTCTTGACCATTTGGCCATAATCTGGTGACACCCACGGAAGCATAGACAACCATACAAGCAGTCATGGATGCAGCACCCCATAGCAAACAAGTACGACGACCATATCTATCAACAACGTAAATACCAACAAAGGTGGAAGCAAAGTTAACAATACCCAAGACAATAGAGGTTTCGAAAGAGTCACTCAAACCAACAGCCTTGAAAATAGTAGTACCATAGTAGAAGAAATAGTTATCACCTGTCAATTGTTGTAGAGATTGAATCATAGCACCCATGATCAAACGTTGGAAAATTTTGTTCTTGGTAGCAAACAATTCACCCCAGGATGCATTACCAGCTAATTTTTCTGCTTCAATACCGGCCAAGACAGCTTCGACTTCAGCCAAAACAGATGGATCATCAACAGCAACCTTGTTAGAAACGGCAATAGAACGTTTGGCTTCTTCGATCTTACCGACTTCAGCCAAGTAACGTGGAGACTCTGGAACAAATGTCATACCACCAATCATAAACAAAGCCCAGGCAAAACCTAGACCCAATGGGACTCTCCATTGTACAGAGTTGGAGTATGTCTTGGTACCATAGTTAGTACAGTAACCCAAGAAAATACCGGCAGTAATCATCAATTGGTAGCAAGCAACCAAAGTACCTCTTAAATGCTTTGGAGATACTTCAGAAATCAACATAGGAGATAAAACGGCAATACCACCAACACCCAAACCGGAAATAATTCTACCGATGAAATATTGGTACCATTTGTTGATCGAGGCAATTTGAATAATAATACCGATGATGTAGATAACAACAACGACAATCAAACCCATTTTACGACCATACATATCACCCAATTTAGCCAAAATAATACCACCAATGGCACAACCAATGTTGAAAATAGCGACAATTAAACCAGTTCTAACCTTAGACAAATAATAAGTACCATCTTTGTGTTGCATACCAAATCTTCTGATGAAATCGGTTTGATTGACGAAACCAGAAATGGTACCAGTATCCCAACCGAAAACAAAACCACCAAAGGCGATCATGATACACATAATAGAGACAGTGACATAGGCAGAAGCAGGTCTCTTTGGAATTTCAACGACAGGTTCTTGCTCTTCACCTTCACCATAAGCTTTTATTTCATCTCTTTCAGCCTTGTTTGATGGTGTAGATAAAACCGAGTGGGAGGCTGAGTCAACAGCAGAGAGATGCTCCACAGGAGTTTGCTCTGCAATAGCAGCGTCTTGTGACAT > 982 SCRG_04403 NA high_affinity_hexose_transporter EDV08767.1 NA MSSAQSSIDSDGDIRDADIHVAPPVEKEWSDGFDDNEVINGDNVEPPKRGLIGYLVIYLLCYPISFGGFLPGWDSGITAGFINMDNFKMNFGSYKHSTGEYYLSNVRMGLLVAMFSVGCAIGGLIFARLADTLGRRLAIVIVVLVYMVGAIIQISSNHKWYQYFVGKIIYGLGAGGCSVLCPMLLSEIAPTDLRGGLVSLYQLNMTFGIFLGYCSVYGTRKYDNTAQWRVPLGLCFLWALIIIIGMLLVPESPRYLIECERHEEARASIAKINKVSPEDPWVLKQADEINAGVLAQRELGEASWKELFSVKTKVLQRLITGILVQTFLQLTGENYFFFYGTTIFKSVGLTDGFETSIVLGTVNFFSTIIAVMVVDKIGRRKCLLFGAAGMMACMVIFASIGVKCLYPHGRDGPSSKGAGNAMIVFTCFYIFCFATTWAPVAYIVVAESFPSKVKSRAMSISTACNWLWQFLIGFFTPFITGSIHFYYGYVFVGCLVAMFLYVFFFLPETIGLSLEEIQLLYEEGIKPWKSASWVPPSRRGISSEESKTEKKDWKKFLKFSKGSD Saccharomycetes Saccharomyces_cerevisiae_RM11-1a Saccharomyces_cerevisiae_RM11-1a CH408052 15006..16700 Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_MacCallum,I.A.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_OLeary,S.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Pratt,S._and_Kruglyak,L. NA 0:1695 This_version_of_the_assembly_represents_10x_coverage_of_the_genome.Annotation_was_added_to_the_scaffolds_in_June_2008. NA 16-JUN-2008 Saccharomyces_cerevisiae_RM11-1a_scaffold_11_genomic_scaffold,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_B3LRV1_YEAS1.gb Saccharomyces 61613720 Unpublished fungi CH408052 high_affinity_hexose_transporter NA budding_yeasts sac_fungi NA 1695 NA genomic_DNA NA RM11-1a NA yeast NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 285006 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Annotation_of_the_Saccharomyces_cerevisiae_RM11-1a_Genome NA CH408052.1 TCAATCAGAACCCTTTGAGAACTTCAAAAATTTCTTCCAATCCTTCTTCTCGGTCTTACTTTCTTCGGAAGAAATACCTCTCCTAGAAGGTGGGACCCAAGATGCAGATTTCCATGGTTTTATACCTTCTTCGTATAGTAATTGGATTTCCTCCAAAGATAGACCAATCGTTTCTGGTAAAAAGAAGAAAACGTACAAAAACATTGCAACCAAACAACCTACGAAAACATAGCCGTAATAGAAGTGGATAGACCCAGTAATGAATGGTGTGAAAAAACCGATCAAAAATTGCCATAACCAGTTGCATGCAGTTGAAATCGACATGGCTCTAGACTTGACCTTCGAAGGGAACGACTCGGCAACCACAATATAAGCAACAGGAGCCCATGTCGTTGCAAAGCAGAATATATAGAAGCATGTGAACACAATCATGGCATTACCTGCACCTTTCGAGGATGGACCATCCCGGCCATGAGGGTAAAGACATTTTACCCCGATACTTGCAAATATGACCATACAAGCCATCATCCCAGCTGCACCAAATAACAGACATTTACGACGGCCAATTTTGTCTACGACCATAACAGCAATAATAGTGGAGAAGAAGTTCACTGTACCTAGGACGATCGACGTCTCAAACCCATCAGTAAGCCCAACTGATTTGAAAATGGTAGTTCCGTAGAAGAAGAAGTAGTTTTCACCAGTAAGTTGCAAAAAGGTTTGCACAAGAATACCTGTGATCAAACGTTGAAGGACTTTAGTTTTGACGGAGAAAAGTTCTTTCCATGAAGCTTCTCCTAGTTCTCTTTGGGCAAGGACACCGGCGTTGATTTCATCAGCCTGTTTGAGTACCCATGGATCCTCTGGTGAAACCTTGTTGATTTTGGCAATGGAAGCACGGGCCTCTTCGTGTCTCTCACATTCAATAAGATATCTTGGGGACTCTGGAACCAATAACATACCAATGATAATAATCAAAGCCCATAAAAAGCAAAGCCCAAGGGGCACTCTCCATTGTGCAGTGTTATCGTATTTTCTCGTACCATAAACGCTACAATAACCCAAGAAAATACCGAAGGTCATGTTCAGTTGGTACAATGAGACAAGACCACCTCTCAAATCTGTGGGAGCTATTTCAGACAAAAGCATTGGACATAACACCGAACAGCCACCAGCACCAAGACCATAGATAATCTTACCAACGAAGTATTGGTACCATTTGTGATTCGAACTGATCTGAATAATTGCACCAACCATATATACCAACACCACGATTACAATTGCCAGCCTTCTACCTAAAGTATCAGCAAGACGGGCAAAAATAAGACCACCTATGGCACATCCTACACTGAACATAGCCACAAGAAGACCCATACGCACATTGCTCAAATAATATTCACCAGTGCTATGCTTGTAAGAACCGAAGTTCATTTTAAAGTTGTCCATGTTAATGAAACCTGCTGTGATACCACTATCCCAACCAGGCAGGAAACCCCCAAAGGATATTGGATAACACAGTAAGTAAATGACAAGATAACCTATGAGCCCTCTTTTTGGTGGCTCAACGTTATCCCCGTTTATGACTTCGTTGTCATCAAATCCATCTGACCACTCTTTTTCCACGGGTGGTGCGACATGAATATCAGCATCTCGAATATCTCCATCGCTATCAATAGAGGATTGCGCACTAGACAT > 983 SCRG_04809 NA low-affinity_glucose_transporter EDV09142.1 NA MSELENAHQGPLEGSATVSTNSNSYNEKSGNSTAPGTAGYNDNLAQAKPVSSYISHEGPPKDELEELQKEVDKQLEKKSKSDLLFVSVCCLMVAFGGFVFGWDTGTISGFVRQTDFIRRFGSTRANGTTYLSDVRTGLMVSIFNIGCAIGGIVLSKLGDMYGRKIGLMTVVVIYSIGIIIQIASIDKWYQYFIGRIISGLGVGGITVLAPMLISEVSPKQLRGTLVSCYQLMITFGIFLGYCTNFGTKNYSNSVQWRVPLGLCFAWSIFMIVGMTFVPESPRYLVEVGKIEEAKRSLARANKTTEDSPLVTLEMENYQSSIEAERLAGSASWGELVTGKPQMFRRTLMGMMIQSLQQLTGDNYFFYYGTTIFQAVGLEDSFETAIVLGVVNFVSTFFSLYTVDRFGRRNCLLWGCVGMICCYVVYASVGVTRLWPNGQDQPSSKGAGNCMIVFACFYIFCFATTWAPVAYVLISESYPLRVRGKAMSIASACNWIWGFLISFFTPFITSAINFYYGYVFMGCMVFAYFYVFFFVPETKGLTLEEVNEMYEENVLPWKSTKWIPPSRRTTDYDLDATRNDPRPFYKRMFTKEK Saccharomycetes Saccharomyces_cerevisiae_RM11-1a Saccharomyces_cerevisiae_RM11-1a CH408053 294287..296065 Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_MacCallum,I.A.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_OLeary,S.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Pratt,S._and_Kruglyak,L. NA 0:1779 This_version_of_the_assembly_represents_10x_coverage_of_the_genome.Annotation_was_added_to_the_scaffolds_in_June_2008. NA 16-JUN-2008 Saccharomyces_cerevisiae_RM11-1a_scaffold_12_genomic_scaffold,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_B3LSL1_YEAS1.gb Saccharomyces 61613718 Unpublished fungi CH408053 low-affinity_glucose_transporter NA budding_yeasts sac_fungi NA 1779 NA genomic_DNA NA RM11-1a NA yeast NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 285006 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Annotation_of_the_Saccharomyces_cerevisiae_RM11-1a_Genome NA CH408053.1 TTATTTTTCTTTAGTGAACATCCTTTTATAAAATGGTCTCGGATCATTTCTAGTAGCGTCTAGGTCATAATCTGTTGTTCTCCTAGATGGTGGGATCCATTTGGTAGACTTCCAAGGTAGCACATTTTCTTCATACATTTCGTTGACTTCTTCTAATGTTAAGCCCTTTGTCTCTGGAACAAAGAAGAACACATAAAAGTATGCGAACACCATACAACCCATAAAGACATAGCCATAATAGAAATTGATTGCTGAAGTAATAAATGGAGTGAAAAAACTGATCAAGAACCCCCAAATCCAGTTACAGGCACTTGCAATCGACATTGCTTTACCACGTACTCTTAAGGGATACGACTCAGAGATAAGGACATAGGCAACGGGGGCCCAAGTGGTAGCGAAACAGAAAATGTAGAAACATGCGAAAACAATCATACAGTTACCAGCACCCTTTGAAGATGGTTGATCTTGACCGTTTGGCCATAATCTGGTAACACCAACAGAGGCATAGACGACATAGCAACAAATCATACCTACACAGCCCCATAACAAACAATTACGACGACCAAAACGATCGACGGTATATAGCGAGAAAAAAGTCGAAACAAAATTAACAACACCCAAAACAATAGCAGTTTCAAATGAATCTTCCAAACCAACAGCCTGGAAAATTGTAGTACCATAGTAAAAGAAGTAATTGTCACCTGTCAGCTGTTGTAAAGATTGAATCATCATACCCATTAGTGTACGTCTGAACATCTGGGGCTTACCAGTAACCAATTCCCCCCAAGAAGCAGAGCCCGCCAATCTCTCAGCTTCAATAGAAGACTGATAGTTCTCCATTTCTAAAGTTACTAAAGGAGAGTCTTCAGTGGTTTTGTTAGCTCTTGCTAAGGACCGCTTGGCCTCTTCAATTTTTCCCACTTCTACCAGATAACGTGGGGATTCAGGAACGAACGTCATACCAACAATCATAAAAATAGACCATGCAAAGCATAAGCCTAATGGTACCCTCCATTGGACAGAGTTTGAGTAATTCTTGGTACCAAAATTAGTACAATATCCCAAAAAGATACCGAAAGTGATCATTAATTGGTAACATGAAACCAGAGTACCACGCAACTGCTTAGGCGACACTTCAGAAATTAGCATAGGCGCCAAAACTGTAATACCACCAACGCCCAGTCCTGAGATGATTCTTCCAATGAAATATTGATACCATTTGTCAATGGAGGCGATTTGGATGATGATCCCAATTGAGTAAATGACGACAACAGTCATCAGACCAATCTTACGTCCATACATATCACCGAGCTTTGACAAAACTATACCTCCGATAGCGCAGCCGATGTTGAAAATAGAAACCATCAAACCGGTTCTGACATCGGAAAGATAGGTAGTCCCGTTTGCACGGGTGCTGCCAAATCGCCTAATGAAGTCTGTTTGCCTGACAAAACCAGATATAGTACCAGTATCCCACCCAAACACGAACCCACCAAAAGCAACCATCAAACAGCAGACGGATACAAATAGTAAATCCGACTTCGATTTCTTCTCTAGTTGTTTGTCAACCTCCTTCTGAAGCTCTTCCAGTTCGTCTTTGGGAGGGCCTTCATGGGAAATGTAACTTGAGACGGGTTTAGCTTGTGCCAAATTATCGTTGTAACCGGCGGTACCAGGAGCAGTCGAGTTTCCTGACTTCTCGTTGTATGAGTTAGAATTTGTGCTCACAGTAGCAGACCCTTCCAAGGGGCCTTGATGAGCGTTTTCAAGTTCCGACAT > 984 SCRG_05536 NA high_affinity_hexose_transporter EDV09829.1 NA MVSSSVSILGTSAKASTSLSRKDEIKLTPETREASLDIPYKPIIAYWTVMGLCLMIAFGGFIFGWDTGTISGFINQTDFKRRFGELQRDGSFQLSDVRTGLIVGIFNIGCALGGLTLGRLGDIYGRKIGLMCVILVYVVGIVIQIASSDKWYQYFIGRIVSGMGVGGVAVLSPTLISEISPKHLRGTCVSFYQLMITLGIFLGYCTNYGTKKYSNSIQWRVPLGLCFAWAIFMVIGMVMVPESPRYLVEKGKYEEARRSLAKSNKVTVTDPGVVFEFDTIVANMELERAVGNASWHELFSNKGAILPRVIMGIVIQSLQQLTGCNYFFYYGTTIFNAVGMQDSFETSIVLGAVNFASTFVALYIVDKFGRRKCLLWGSASMAICFVIFATVGVTRLWPQGKDQPSSQSAGNVMIVFTCFFIFSFAITWAPIAYVIVAETYPLRVKNRAMAIAVGANWMWGFLIGFFTPFITRSIGFSYGYVFMGCLIFSYFYVFFFVCETKGLTLEEVNEMYEERIKPWKSGGWIPSSRRTPQPTSSTPLVIVDSK Saccharomycetes Saccharomyces_cerevisiae_RM11-1a Saccharomyces_cerevisiae_RM11-1a CH408057 94316..95956 Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_MacCallum,I.A.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_OLeary,S.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Pratt,S._and_Kruglyak,L. NA 0:1641 This_version_of_the_assembly_represents_10x_coverage_of_the_genome.Annotation_was_added_to_the_scaffolds_in_June_2008. NA 16-JUN-2008 Saccharomyces_cerevisiae_RM11-1a_scaffold_16_genomic_scaffold,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_B3LUJ8_YEAS1.gb Saccharomyces 61613706 Unpublished fungi CH408057 high_affinity_hexose_transporter NA budding_yeasts sac_fungi NA 1641 NA genomic_DNA NA RM11-1a NA yeast NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 285006 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Annotation_of_the_Saccharomyces_cerevisiae_RM11-1a_Genome NA CH408057.1 ATGGTTAGTTCAAGTGTTTCCATTTTGGGGACTAGCGCCAAGGCATCCACTTCTCTAAGTAGAAAGGATGAAATTAAACTAACCCCTGAAACAAGGGAAGCTAGCTTGGACATTCCATACAAACCCATTATTGCATACTGGACGGTGATGGGTCTCTGTCTGATGATTGCCTTTGGTGGATTCATTTTTGGTTGGGATACAGGAACCATTTCAGGGTTTATTAACCAAACAGATTTCAAGAGAAGGTTTGGTGAGTTACAAAGGGACGGCAGTTTTCAACTATCAGATGTCAGGACAGGGCTAATTGTCGGTATCTTCAACATAGGTTGTGCTTTAGGTGGCCTAACGCTGGGACGCCTGGGCGATATTTATGGGCGTAAAATCGGCTTAATGTGTGTTATACTGGTGTATGTTGTTGGTATCGTGATCCAGATTGCTTCCTCTGACAAATGGTATCAATATTTTATTGGTAGAATTGTTTCTGGAATGGGTGTTGGAGGTGTTGCTGTGCTGTCGCCAACTTTGATCTCAGAAATTTCCCCAAAGCACCTAAGAGGCACTTGTGTCTCTTTTTACCAGCTAATGATTACCCTTGGAATTTTCTTGGGCTACTGTACCAATTATGGTACAAAGAAATATTCAAATTCAATACAGTGGCGGGTTCCCTTGGGTTTGTGTTTTGCGTGGGCAATCTTTATGGTGATTGGAATGGTTATGGTTCCGGAATCGCCCAGATATTTAGTAGAAAAAGGTAAGTATGAAGAAGCTAGAAGGTCTTTGGCCAAATCAAACAAGGTCACAGTTACTGATCCAGGCGTTGTTTTTGAGTTTGATACTATAGTTGCAAATATGGAATTAGAAAGGGCTGTTGGAAATGCCAGTTGGCACGAACTCTTCTCAAATAAAGGAGCAATTCTACCAAGGGTAATAATGGGAATCGTTATCCAGTCACTGCAACAGCTTACTGGCTGTAATTATTTTTTCTACTACGGCACGACCATTTTCAATGCTGTTGGAATGCAAGACTCTTTCGAGACTTCCATTGTCCTTGGGGCTGTTAATTTTGCTTCTACATTTGTTGCACTATACATTGTGGATAAATTTGGGCGTCGAAAATGTTTATTGTGGGGGTCTGCCTCGATGGCAATTTGTTTCGTCATATTCGCCACCGTTGGCGTCACTAGATTATGGCCACAAGGGAAAGACCAACCTTCTTCGCAAAGTGCTGGTAATGTTATGATCGTTTTTACTTGTTTCTTCATTTTCTCTTTTGCCATTACTTGGGCTCCTATCGCCTATGTCATTGTGGCAGAAACTTATCCATTAAGAGTTAAAAATCGTGCCATGGCCATTGCGGTTGGTGCGAACTGGATGTGGGGTTTCTTGATTGGATTTTTCACACCCTTTATCACTAGATCCATAGGATTTTCTTATGGCTATGTTTTCATGGGTTGCTTAATCTTTTCGTACTTCTACGTTTTCTTCTTTGTTTGCGAAACAAAGGGATTAACTCTGGAGGAAGTTAATGAAATGTACGAAGAAAGAATAAAGCCATGGAAGTCCGGAGGTTGGATTCCCAGTTCTAGAAGAACACCACAACCAACAAGCAGTACACCATTAGTTATTGTTGATAGTAAATAA > 985 AWRI1631_50040 NA YEL069Cp-like_protein EDZ72728.1 NA DLRGGLVSLYQLNMTFGIFLGYCSVYGTRKYDNTAQWRVPLGLCFLWALIIIIGMLLVPESPRYLIECERHEEARASIAKINKVSPEDPWVLKQADEINAGVLAQRELGEASWKELFSVKTKVLQRLITGILVQTFLQLTGENYFFFYGTTIFKSVGLTDGFETSIVLGTVNFFSTIIAVMVVDKIGRRKCLLFGAAGMMACMVIFASIGVKCLYPHGRDGPSSKGAGNAMIVFTCFYIFCFATTWAPVAYIVVAESFPSKVKSRAMSISTACNWLWQFLIGFFTPFITGSIHFYYGYVFVGCLVAMFLYVFFFLPETIGLSLEEIQLLYEEGIKPWKSASWVPPSRRGISSEESKTEKKDWKKFLKFSKGSD Saccharomycetes Saccharomyces_cerevisiae_AWRI1631 Saccharomyces_cerevisiae_AWRI1631 ABSV01000617 13667..14788 Borneman,A.R.,_Forgan,A.H.,_Pretorius,I.S._and_Chambers,P.J. NA 0:>1122 This_version_of_the_project_represents_7x_coverage_of_the_genome. NA 30-SEP-2008 Saccharomyces_cerevisiae_AWRI1631_chromosome_5_chr05_7536_22323,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_B5VH69_YEAS6.gb Saccharomyces 207346136 FEMS_Yeast_Res._8_(7),_1185-1195_(2008) fungi ABSV01000617 YEL069Cp-like_protein NA budding_yeasts sac_fungi 18778279 1122 5 genomic_DNA NA AWRI1631 NA yeast NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 545124 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Comparative_genome_analysis_of_a_Saccharomyces_cerevisiae_wine_strain NA ABSV01000617.1 TCAATCAGAACCCTTTGAGAACTTCAAAAATTTCTTCCAATCCTTCTTCTCGGTCTTACTTTCTTCGGAAGAAATACCTCTCCTAGAAGGTGGGACCCAAGATGCAGATTTCCATGGTTTTATACCTTCTTCGTATAGTAATTGGATTTCCTCCAAAGATAGACCAATCGTTTCTGGTAAAAAGAAGAAAACGTACAAAAACATTGCAACCAAACAACCTACGAAAACATAGCCGTAATAGAAGTGGATAGACCCAGTAATGAATGGTGTGAAAAAACCGATCAAAAATTGCCATAACCAGTTGCATGCAGTTGAAATCGACATGGCTCTAGACTTGACCTTCGAAGGGAACGACTCGGCAACCACAATATAAGCAACAGGAGCCCATGTCGTTGCAAAGCAGAATATATAGAAGCATGTGAACACAATCATGGCATTACCTGCACCTTTCGAGGATGGACCATCCCGGCCATGAGGGTAAAGACATTTTACCCCGATACTTGCAAATATGACCATACAAGCCATCATCCCAGCTGCACCAAATAACAGACATTTACGACGGCCAATTTTGTCTACGACCATAACAGCAATAATAGTGGAGAAGAAGTTCACTGTACCTAGGACGATCGACGTCTCAAACCCATCAGTAAGCCCAACTGATTTGAAAATGGTAGTTCCGTAGAAGAAAAAGTAGTTTTCACCAGTAAGTTGCAAAAAGGTTTGCACAAGAATACCTGTGATCAAACGTTGAAGGACTTTAGTTTTGACGGAGAAAAGTTCTTTCCATGAAGCTTCTCCTAGTTCTCTTTGGGCAAGGACACCGGCGTTGATTTCATCAGCCTGTTTGAGTACCCATGGATCCTCTGGTGAAACCTTGTTGATTTTGGCAATGGAAGCACGGGCCTCTTCGTGTCTCTCACATTCAATAAGATATCTTGGGGACTCTGGAACCAATAACATACCAATGATAATAATCAAAGCCCATAAAAAGCAAAGCCCAAGGGGCACTCTCCATTGTGCAGTGTTATCGTATTTTCTCGTACCATAAACGCTACAATAACCCAAGAAAATACCGAAGGTCATGTTCAGTTGGTACAATGAGACAAGACCACCTCTCAAATC > 986 AWRI1631_71490 NA hypothetical_protein EDZ72222.1 NA MEFIPQNCWPNNNTVITWRDLTFVLSLKYFHNELEPLIEFVVVGSINGSPDSICSCQSCISCAASSKVTPRSLHRDNLASVTLPCANNHFGDSSTINHMKKFNTAIRKLPNKIHLQRYESVSGRAIPCVNKTPNLIQICVIEPSKPSQPLGATSLMKRGIITIKEPHEIPTRILPMIKPL Saccharomycetes Saccharomyces_cerevisiae_AWRI1631 Saccharomyces_cerevisiae_AWRI1631 ABSV01000867 1495..2412 Borneman,A.R.,_Forgan,A.H.,_Pretorius,I.S._and_Chambers,P.J. NA 496:>918 This_version_of_the_project_represents_7x_coverage_of_the_genome. NA 30-SEP-2008 Saccharomyces_cerevisiae_AWRI1631_chromosome_7_chr07_306910_311110,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_B5VIM2_YEAS6.gb Saccharomyces 207345382 FEMS_Yeast_Res._8_(7),_1185-1195_(2008) fungi ABSV01000867 hypothetical_protein NA budding_yeasts sac_fungi 18778279 918 7 genomic_DNA NA AWRI1631 NA yeast NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 545124 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Comparative_genome_analysis_of_a_Saccharomyces_cerevisiae_wine_strain NA ABSV01000867.1 TTAGCCGCTCCTCTTGGTCTCCGGAACCTTCTTCCAGATAAAGGCGCTTATTGAGCATGCTATGATAGCAAAAATGATGAAAACATAGCCTGACAAAACATCATGAATAATAGGGAAAGTATATGCAATGATAAAAGTTCCTACCCAATTGCAAATGGTACCATATCTTTGCGCAAGGACCATATCCTGTGGTTTTGATACTTCTCTCATTATTATAAATGGCAACGGATTTAACCCCATCGTGAAAACGCCCATATATATAAATGAAAACACAATCAAAAGGTTCATTTTATTATGGTTCATTGCTATTCCCATAATGAAGGCGGTAACAGAAACTAAGACGGTGGACGTCATCAGAAGCGGTTTACGTGGCAAACTATGAATTAGCAGAGAAACTAGTATGGTGACTAATACATTCACCATACTAATGAAAAAGTTTATCCTAATTGCGTGCTGAGGATACAGTTGACTAATTATCTTGGTACCATATAGTACAATGGAGTTTATACCGCAGAATTGTTGGCCAAATAACAATACAGTGATAACATGGCGAGACTTGACATTTGTTCTGTCCCTCAAGTATTTCCATAATGAATTAGAACCGCTAATAGAGTTCGTGGTGGTTGGTTCAATCAACGGATCCCCAGATTCTATTTGCAGTTGCCAATCCTGTATCTCTTGTGCGGCTTCATCAAAAGTCACGCCACGTAGCTTACATAGAGATAACTTAGCATCGGTGACTCTTCCATGTGCTAACAACCATTTTGGAGATTCATCGACTATAAACCACATGAAAAAATTCAATACCGCGATAAGGAAGCTACCAAACAAAATCCACCTCCAACGGTATGAATCAGTCAGCGGGAGGGCTATTCCTTGTGTCAACAAGACCCCTAACCTGATACAGATTTGTGTCAT > 987 AWRI1631_110070 NA YKL217Wp-like_protein EDZ71095.1 NA MSSSITDEKISGEQQQPAGRKLYYNTSTFAEPPLVDEEGNPINYEPEVYNPDHEKLYHNPSLPAQSIQDTRDDELLERVYSQDQGVEYEEDEEDKPNLSAASIKSYALTRFTSLLHIHEFSWENVNPIPELRKMTWQNWNYFFMGYFAWLSAAWAFFCVSVSVAPLAELYDRPTKDITWGLGLVLFVRSAGAVIFGLWTDKSSRKWPYITCLFLFVIAQLCTPWCDTYEKFLGVRWITGIAMGGIYGCASATAIEDAPVKARSFLSGLFFSAYAMGFIFAIIFYRAFGYFRDDGWKILFWFSIFLPILLIFWRLLWPETKYFTKVLKARKLILSDAVKANGGEPLPKANFKQKMVSMKRTVQKYWLLFAYLVVLLVGPNYLTHASQDLLPTMLRAQLGLSKDAVTVIVVVTNIGAICGGMIFGQFMEVTGRRLGLLIACTMGGCFTYPAFMLRSEKAILGAGFMLYFCVFGVWGILPIHLAELAPADARALVAGLSYQLGNLASAAASTIETQLADRYPLERDASGAVIKEDYAKVMAILTGSVFIFTFACVFVGHEKFHRDLSSPVMKKYINQVEEYEADGLSISDIVEQKTECASVKMIDSNVSKTYEEHIETV Saccharomycetes Saccharomyces_cerevisiae_AWRI1631 Saccharomyces_cerevisiae_AWRI1631 ABSV01001407 1902..3752 Borneman,A.R.,_Forgan,A.H.,_Pretorius,I.S._and_Chambers,P.J. NA 0:1851 This_version_of_the_project_represents_7x_coverage_of_the_genome. NA 30-SEP-2008 Saccharomyces_cerevisiae_AWRI1631_chromosome_11_chr11_20312_26574,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_B5VLU8_YEAS6.gb Saccharomyces 207343716 FEMS_Yeast_Res._8_(7),_1185-1195_(2008) fungi ABSV01001407 YKL217Wp-like_protein NA budding_yeasts sac_fungi 18778279 1851 11 genomic_DNA NA AWRI1631 NA yeast NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 545124 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Comparative_genome_analysis_of_a_Saccharomyces_cerevisiae_wine_strain NA ABSV01001407.1 ATGTCGTCGTCAATTACAGATGAGAAAATATCTGGTGAACAGCAACAACCTGCTGGCAGAAAACTATACTATAACACAAGTACATTTGCAGAGCCTCCTCTAGTGGACGAAGAAGGTAACCCTATAAATTATGAGCCGGAAGTTTACAACCCGGATCACGAAAAGCTATACCATAACCCATCACTGCCTGCACAATCAATTCAGGATACAAGAGATGATGAATTGCTGGAAAGAGTTTATAGCCAGGATCAAGGTGTAGAGTATGAGGAAGATGAAGAGGATAAGCCAAACCTAAGCGCTGCGTCCATTAAAAGTTATGCTTTAACGAGATTTACGTCCTTACTGCACATCCACGAGTTTTCTTGGGAGAATGTCAATCCCATACCCGAACTGCGCAAAATGACATGGCAGAATTGGAACTATTTTTTTATGGGTTATTTTGCGTGGTTGTCTGCGGCTTGGGCCTTCTTTTGCGTTTCAGTATCAGTCGCTCCATTGGCTGAACTATATGACAGACCAACCAAGGACATCACCTGGGGGTTGGGATTGGTGTTATTTGTTCGTTCAGCAGGTGCTGTCATATTTGGTTTATGGACAGATAAGTCTTCCAGAAAGTGGCCGTACATTACATGTTTGTTCTTATTTGTCATTGCACAACTCTGTACTCCATGGTGTGACACATATGAGAAATTTCTGGGCGTAAGGTGGATAACCGGTATTGCTATGGGAGGAATTTACGGATGTGCTTCTGCAACAGCGATTGAAGATGCACCTGTGAAAGCACGTTCGTTCCTATCAGGTCTATTTTTTTCTGCTTACGCTATGGGGTTTATATTTGCTATCATTTTTTACAGAGCCTTTGGCTACTTTAGGGATGATGGCTGGAAAATATTGTTTTGGTTTAGTATTTTTCTACCAATTCTACTAATTTTCTGGAGATTGTTATGGCCTGAAACGAAATACTTCACCAAGGTTTTGAAAGCCCGTAAATTAATATTGAGTGACGCAGTGAAAGCTAATGGTGGCGAGCCTCTACCAAAAGCCAACTTTAAACAAAAGATGGTATCCATGAAGAGAACAGTTCAAAAGTACTGGTTGTTGTTCGCATATTTGGTTGTTTTATTGGTGGGTCCAAATTACTTGACTCATGCTTCTCAAGACTTGTTGCCAACCATGCTGCGTGCCCAATTAGGCCTATCCAAGGATGCTGTCACTGTCATTGTAGTGGTCACCAACATCGGTGCTATTTGTGGGGGTATGATATTTGGACAGTTCATGGAAGTTACTGGAAGAAGATTAGGCCTATTGATTGCATGCACAATGGGTGGTTGCTTCACCTACCCTGCATTTATGTTGAGAAGCGAAAAGGCTATATTAGGTGCCGGTTTCATGTTATATTTTTGTGTCTTTGGTGTCTGGGGTATCCTGCCCATTCACCTTGCAGAGTTGGCCCCTGCTGATGCAAGGGCTTTGGTTGCCGGTTTATCTTACCAGCTAGGTAATCTAGCTTCTGCAGCGGCTTCCACGATTGAGACACAGTTAGCTGATAGATACCCATTAGAAAGAGATGCCTCTGGTGCTGTGATTAAAGAAGATTATGCCAAAGTTATGGCTATCTTGACTGGTTCTGTTTTCATCTTCACATTTGCTTGTGTTTTTGTTGGCCATGAGAAATTCCATCGTGATTTGTCCTCTCCTGTTATGAAGAAATATATAAACCAAGTGGAAGAATACGAAGCCGATGGTCTTTCGATTAGTGACATTGTTGAACAAAAGACGGAATGTGCTTCAGTGAAGATGATTGATTCGAACGTCTCAAAGACATATGAGGAGCATATTGAGACCGTTTAA > 988 AWRI1631_130120 NA YML123Cp-like_protein EDZ70338.1 NA MSSVNKDTIHVAERSLHKEHLTEGGNMAFHNHLNDFAHIEDPLERRRLALESIDNEGFGWQQVKTISIAGVGFLTDSYDIFAINLGITMMSYVYWHGSMPGPSQTLLKVSTSVGTVIGQFGFGTLADIVGRKRIYGMELIIMIVCTILQTTVAHSPAINFVAVLTFYRIVMGIGIGGDYPLSSIITSEFATTKWRGAIMGAVFANQAWGQISGGIIALILVAAYKGELEYANSGAECDARCQKACDQMWRILIGLGTVPGLACLYFRLTIPESPRYQLDVNAKLELAAAAQEQDGEKKIHDTSDEDMAINGLERASTAVESLDNHPPKASFKDFCRHFGQWKYGKILLGTAGSWFTLDVAFYGLSLNSAVILQTIGYAGSKNVYKKLYDTAVGNLILICAGSLPGYWVSVFTVDIIGRKPIQLAGFIILTALFCVIGFAYHKLGDHGLLALYVICQFFQNFGPNTTTFIVPGECFPTRYRSTAHGISAASGKVGAIIAQTALGTLIDHNCARDGKPTNCWLPHVMEIFALFMLLGIFTTLLIPETKRKTLEEINELYHDEIDPATLNFRNKNNDIESSSPSQLQHEA Saccharomycetes Saccharomyces_cerevisiae_AWRI1631 Saccharomyces_cerevisiae_AWRI1631 ABSV01001743 1149..2912 Borneman,A.R.,_Forgan,A.H.,_Pretorius,I.S._and_Chambers,P.J. NA 0:1764 This_version_of_the_project_represents_7x_coverage_of_the_genome. NA 30-SEP-2008 Saccharomyces_cerevisiae_AWRI1631_chromosome_13_chr13_22868_26399,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_B5VP08_YEAS6.gb Saccharomyces 207342621 FEMS_Yeast_Res._8_(7),_1185-1195_(2008) fungi ABSV01001743 YML123Cp-like_protein NA budding_yeasts sac_fungi 18778279 1764 13 genomic_DNA NA AWRI1631 NA yeast NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 545124 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Comparative_genome_analysis_of_a_Saccharomyces_cerevisiae_wine_strain NA ABSV01001743.1 TTATGCTTCATGTTGAAGTTGAGATGGGCTGGAAGATTCAATGTCATTATTCTTGTTTCTGAAGTTTAGCGTAGCAGGATCGATTTCATCGTGGTATAGCTCGTTAATTTCTTCTAGAGTCTTTCTCTTAGTTTCTGGGATCAACAAGGTTGTGAAGATACCCAACAACATGAATAACGCGAAAATTTCCATGACGTGAGGTAACCAACAGTTGGTTGGCTTACCGTCTCTAGCACAGTTATGGTCGATTAGAGTACCCAAAGCGGTTTGTGCAATAATGGCACCGACCTTACCAGATGCAGCAGAAATACCATGAGCAGTAGATCTGTAACGAGTTGGGAAACACTCACCAGGAACAATAAAGGTGGTTGTGTTTGGACCGAAGTTTTGGAAGAATTGACAAATGACGTAAAGAGCCAACAGACCATGGTCACCAAGTTTATGGTATGCGAAACCGATGACACAGAACAAAGCGGTCAAGATGATGAAACCGGCTAATTGAATTGGTTTTCTACCGATTATATCGACGGTGAAGACGGATACCCAGTAACCAGGTAATGAACCAGCACAAATCAAAATCAGATTACCGACAGCAGTATCATACAGTTTCTTGTAAACGTTTTTGGAACCGGCATAACCGATGGTTTGCAGAATAACAGCACTGTTTAAACTCAACCCGTAGAAAGCAACATCTAAGGTAAACCATGAACCAGCAGTACCTAGCAAAATCTTACCGTACTTCCATTGACCAAAATGTCTGCAGAAATCTTTGAACGAAGCCTTTGGAGGATGATTGTCAAGAGATTCGACGGCAGTAGAAGCTCTTTCCAAACCGTTAATTGCCATGTCTTCATCACTGGTGTCGTGAATTTTCTTTTCGCCATCTTGTTCTTGTGCGGCAGCAGCAAGTTCCAACTTAGCGTTAACATCCAATTGATATCTAGGAGATTCTGGAATAGTTAATCTGAAATACAAACATGCCAACCCTGGAACGGTACCCAACCCAATAAGGATTCTCCACATTTGGTCACAAGCCTTTTGACATCTAGCATCACATTCAGCACCAGAGTTTGCGTATTCTAGTTCGCCCTTGTAAGCAGCAACCAAGATAAGAGCGATGATACCACCGGAGATTTGACCCCAAGCTTGGTTAGCAAAGACAGCACCCATGATGGCACCTCTCCATTTGGTAGTGGCAAATTCAGAAGTAATAATAGAAGATAGTGGGTAGTCACCACCGATACCAATACCCATGACGATACGGTAGAATGTTAAAACAGCAACGAAGTTAATAGCAGGAGAATGAGCAACAGTGGTTTGCAGAATGGTACAGACAATCATGATAATAAGTTCCATACCATAAATTCTCTTACGACCAACAATATCAGCTAAAGTACCAAAACCAAATTGACCAATAACAGTACCAACAGAAGTGGAAACCTTCAACAAGGTTTGACTTGGACCTGGCATACTACCGTGCCAGTAAACGTAGGACATCATAGTGATACCCAAATTAATGGCAAAAATATCATAAGAATCTGTCAAGAAACCAACACCAGCAATGGAGATGGTCTTAACTTGTTGCCAACCGAAACCTTCGTTATCGATGGACTCCAAAGCCAATCTTCTTCTTTCCAGAGGATCTTCAATATGAGCAAAATCATTCAAATGGTTGTGGAAGGCCATGTTACCACCTTCGGTAAGGTGTTCTTTATGAAGACTTCTTTCAGCAACATGAATAGTATCTTTATTGACGGAACTCAT > 989 C1Q_03270 corresponds_to_Saccharomyces_cerevisiae_gene_YDR387C;_Putative_transporter YDR387C-like_protein EEU06291.1 NA MSTDESEDVYSDLYSIISQVTSNTANDIEQLPYALTFKTSLIFVGATIGGLLFGYDTGVISGVLLSLKPEDLSLVVLTDVQKELITSSTSVGSFFGSILAFPLADRYGRRITLAICCSIFILAAIGMAIARTLTFLICGRLLVGIAVGVSAQCVPLFLSEISPSRIRGFMLTLNIIAITGGQLVSYVIASLMKEIDNSWRYLFALSAIPAILFLSILDFIPESPRWSISKGDILYTRDSLRMLYPTASTYHVNSKIKQLIIELDKLRLYEDASEPLLVQSQSVIRYMDSSTSGTLSPPNIKRLSSNTERTSNTMSSSSAYLSALRGPAPNGALASNKKKRHRMEPRTIRALIVGCMLMFFQQITGFNAFMYYAAIIFSKFNIKNPLLPPILIASTNFIFTFFAMYTMDSLGRRAILLRTILIMTVGLLLCSVGFGHDQVNLLLISVVIYVAAYASAMGSVPWTCVEFLPLNRRSFGASCIACTNWLTNAFVSMTYLSTINTIGDENTMLIFAFFTVCAWFFVYFWYPEVKGLSLEEVGRVFDNGIDVHYVFRTYH Saccharomycetes Saccharomyces_cerevisiae_JAY291 Saccharomyces_cerevisiae_JAY291 ACFL01000181 57858..59525 Argueso,J.L.,_Carazzolle,M.F.,_Mieczkowski,P.A.,_Duarte,F.M.,_Netto,O.V.,_Missawa,S.K.,_Galzerani,F.,_Costa,G.G.,_Vidal,R.O.,_Noronha,M.F.,_Dominska,M.,_Andrietta,M.G.,_Andrietta,S.R.,_Cunha,A.F.,_Gomes,L.H.,_Tavares,F.C.,_Alcarde,A.R.,_Dietrich,F.S.,_McCusker,J.H.,_Petes,T.D._and_Pereira,G.A. NA 0:1668 Genome_coverage:_12x_454;_58x_Solexa_single-end_reads;_95x_Solexapaired-end_readsSequencing_technology:_454;_Solexa. NA 20-AUG-2009 Saccharomyces_cerevisiae_JAY291_contig74,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_C7GSD5_YEAS2.gb Saccharomyces 256271202 Genome_Res._19_(12),_2258-2270_(2009) fungi ACFL01000181 YDR387C-like_protein NA budding_yeasts sac_fungi 19812109 1668 NA genomic_DNA NA JAY291 NA yeast NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 574961 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Genome_structure_of_a_Saccharomyces_cerevisiae_strain_widely_used_in_bioethanol_production NA ACFL01000181.1 ATGTCTACAGATGAAAGTGAAGACGTTTATTCTGATCTGTATTCCATTATCTCCCAGGTAACATCCAATACTGCCAATGACATCGAGCAACTCCCATATGCTTTAACGTTCAAAACGTCGTTAATCTTCGTTGGTGCTACCATTGGTGGGCTTTTATTCGGCTATGATACTGGTGTTATATCAGGTGTTCTGCTTTCTTTAAAGCCCGAAGATCTATCTTTGGTAGTTTTAACGGATGTTCAGAAGGAGCTGATAACTTCCAGTACAAGCGTCGGATCATTTTTTGGCTCTATTCTGGCATTTCCTTTAGCAGATAGGTATGGAAGAAGAATTACTCTCGCAATCTGCTGTTCAATTTTTATCCTAGCTGCAATTGGAATGGCTATAGCAAGAACATTGACGTTTTTGATTTGTGGGAGATTGCTGGTTGGGATCGCTGTTGGAGTGTCTGCCCAGTGCGTCCCTCTATTTCTGAGTGAAATTTCACCTTCCAGAATCAGGGGTTTTATGTTGACATTGAACATTATTGCCATCACTGGAGGTCAATTGGTTTCCTATGTGATTGCGTCCCTTATGAAAGAGATTGATAATTCATGGAGATATTTGTTCGCACTTTCTGCTATTCCAGCTATTCTGTTCCTTTCAATACTGGATTTTATCCCTGAATCGCCACGATGGTCCATTTCCAAGGGAGACATTCTATATACCAGGGATTCTCTAAGAATGCTATATCCTACTGCATCTACATATCATGTGAATAGTAAAATTAAGCAGCTGATAATTGAACTCGATAAGTTACGACTATACGAAGATGCAAGTGAACCTTTACTAGTACAGTCCCAATCGGTTATTCGATACATGGATAGTTCAACCTCAGGAACTCTTAGCCCACCTAACATTAAAAGACTTTCCTCGAACACAGAAAGAACTAGCAACACAATGTCCTCCTCATCAGCATATCTATCGGCGTTGCGAGGCCCAGCTCCAAACGGTGCCCTGGCATCTAACAAAAAGAAAAGACACAGAATGGAGCCACGCACAATAAGAGCGTTAATAGTAGGTTGCATGTTAATGTTTTTCCAGCAAATCACTGGCTTTAATGCTTTTATGTACTATGCGGCAATAATATTTTCCAAATTTAATATAAAAAACCCTCTACTGCCTCCAATTTTGATTGCCTCAACGAACTTCATATTCACTTTTTTCGCCATGTACACCATGGACTCTTTGGGAAGAAGAGCCATTCTTTTGAGAACAATTTTGATTATGACTGTTGGGTTACTTCTTTGCAGTGTAGGTTTCGGTCATGACCAAGTCAATTTACTTTTAATTTCTGTTGTAATTTATGTTGCAGCATATGCTTCTGCGATGGGCAGCGTTCCATGGACCTGTGTGGAATTTCTCCCCTTGAACAGGAGATCATTTGGGGCATCATGTATAGCCTGCACAAATTGGTTGACCAATGCATTTGTTTCAATGACATATCTGAGCACTATTAACACCATTGGTGATGAAAATACAATGCTCATTTTTGCTTTTTTCACAGTTTGTGCCTGGTTTTTCGTATATTTTTGGTATCCAGAAGTCAAAGGTTTGTCACTGGAAGAGGTTGGAAGGGTTTTTGATAATGGAATTGATGTTCATTATGTCTTTCGTACCTACCATTGA > 990 EC1118_1M3_0100g Similar_to_YML123C_PHO84_High-affinity_inorganic_phosphate_(Pi)_transporter_and_low-affinity_manganese_transporter Pho84p CAY81695.1 NA MSSVNKDTIHVAERSLHKEHLTEGGNMAFHNHLNDFAHIEDPLERRRLALESIDNEGFGWQQVKTISIAGVGFLTDSYDIFAINLGITMMSYVYWHGSMPGPSQTLLKVSTSVGTVIGQFGFGTLADIVGRKRIYGMELIIMIVCTILQTTVAHSPAINFVAVLTFYRIVMGIGIGGDYPLSSIITSEFATTKWRGAIMGAVFANQAWGQISGGIIALILVAAYKGELEYANSGAECDARCQKACDQMWRILIGLGTVPGLACLYFRLTIPESPRYQLDVNAKLELAAAAQEQDGEKKIHDTSDEDMAINGLERASTAVESLDNHPPKASFKDFCRHFGQWKYGKILLGTAGSWFTLDVAFYGLSLNSAVILQTIGYAGSKNVYKKLYDTAVGNLILICAGSLPGYWVSVFTVDIIGRKPIQLAGFIILTALFCVIGFAYHKLGDHGLLALYVICQFFQNFGPNTTTFIVPGECFPTRYRSTAHGISAASGKVGAIIAQTALGTLIDHNCARDGKPTNCWLPHVMEIFALFMLLGIFTTLLIPETKRKTLEEINELYHDEIDPATLNFRNKNNDIESSSPSQLQHEA Saccharomycetes Saccharomyces_cerevisiae_EC1118 Saccharomyces_cerevisiae_EC1118 FN393082 16557..18320 Novo,M.,_Bigey,F.,_Beyne,E.,_Galeote,V.,_Gavory,F.,_Mallet,S.,_Cambot,B.,_Legras,J.L.,_Wincker,P.,_Casaregola,S._and_Dequin,S. NA 0:1764 NA NA 08-MAR-2010 Saccharomyces_cerevisiae_EC1118_chromosome_XIII,_EC1118_1M3_genomic_scaffold,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_C8ZE79_YEAS8.gb Saccharomyces 259148440 Proc._Natl._Acad._Sci._U.S.A._106_(38),_16333-16338_(2009) fungi FN393082 NA NA budding_yeasts sac_fungi 19805302 1764 13 genomic_DNA NA Lalvin_EC1118 NA yeast NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 643680 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Eukaryote-to-eukaryote_gene_transfer_events_revealed_by_the_genome_sequence_of_the_wine_yeast_Saccharomyces_cerevisiae_EC1118 NA FN393082.1 TTATGCTTCATGTTGAAGTTGAGATGGGCTGGAAGATTCAATGTCATTATTCTTGTTTCTGAAGTTTAGCGTAGCAGGATCGATTTCATCGTGGTATAGCTCGTTAATTTCTTCTAGAGTCTTTCTCTTAGTTTCTGGGATCAACAAGGTTGTGAAGATACCCAACAACATGAATAAGGCGAAAATTTCCATGACGTGAGGTAACCAACAGTTGGTTGGCTTACCGTCTCTAGCACAGTTATGGTCGATTAGAGTACCCAAAGCGGTTTGTGCAATAATGGCACCGACCTTACCAGATGCAGCAGAAATACCATGAGCAGTAGATCTGTAACGAGTTGGGAAACACTCACCAGGAACAATAAAGGTGGTTGTGTTTGGACCGAAGTTTTGGAAGAATTGACAAATGACGTAAAGAGCCAACAGACCATGGTCACCAAGTTTATGGTATGCGAAACCGATGACACAGAACAAAGCGGTCAAGATGATGAAACCGGCTAATTGAATTGGTTTTCTACCGATTATATCGACGGTGAAGACGGATACCCAGTAACCAGGTAATGAACCAGCACAAATCAAAATCAGATTACCGACAGCAGTATCATACAGTTTCTTGTAAACGTTTTTGGAACCGGCATAACCGATGGTTTGCAGAATAACAGCACTGTTTAAACTCAACCCGTAGAAAGCAACATCTAAGGTAAACCATGAACCAGCAGTACCTAGCAAAATCTTACCGTACTTCCATTGACCAAAATGTCTGCAGAAATCTTTGAACGAAGCCTTTGGAGGATGATTGTCAAGAGATTCGACGGCAGTAGAAGCTCTTTCCAAACCGTTAATTGCCATGTCTTCATCACTGGTGTCGTGAATTTTCTTTTCGCCATCTTGTTCTTGTGCGGCAGCAGCAAGTTCCAACTTAGCGTTAACATCCAATTGATATCTAGGAGATTCTGGAATAGTTAATCTGAAATACAAACATGCCAACCCTGGAACGGTACCCAACCCAATAAGGATTCTCCACATTTGGTCACAAGCCTTTTGACATCTAGCATCACATTCAGCACCAGAGTTTGCGTATTCTAGTTCGCCCTTGTAAGCAGCAACCAAGATAAGAGCGATGATACCACCGGAGATTTGACCCCAAGCTTGGTTAGCAAAGACAGCACCCATGATGGCACCTCTCCATTTGGTAGTGGCAAATTCAGAAGTAATAATAGAAGATAGTGGGTAGTCACCACCGATACCAATACCCATGACGATACGGTAGAATGTTAAAACAGCAACGAAGTTAATAGCAGGAGAATGAGCAACAGTGGTTTGCAGAATGGTACAGACAATCATGATAATAAGTTCCATACCATAAATTCTCTTACGACCAACAATATCAGCTAAAGTACCAAAACCAAATTGACCAATAACAGTACCAACAGAAGTGGAAACCTTCAACAAGGTTTGACTTGGACCTGGCATACTACCGTGCCAGTAAACGTAGGACATCATAGTGATACCCAAATTAATGGCAAAAATATCATAAGAATCTGTCAAGAAACCAACACCAGCAATGGAGATGGTCTTAACTTGTTGCCAACCGAAACCTTCGTTATCGATGGACTCCAAAGCCAATCTTCTTCTTTCCAGAGGATCTTCAATATGAGCAAAATCATTCAAATGGTTGTGGAAGGCCATGTTACCACCTTCGGTAAGGTGTTCTTTATGAAGACTTCTTTCAGCAACATGAATAGTATCTTTATTGACGGAACTCAT > 991 EC1118_1B15_4203g Similar_to_YBR241C_Putative_transporter,_member_of_the_sugar_porter_family EC1118_1B15_4203p CBK39319.1 NA MAETERLMPNGGSRETKPLITGHLILGTIVACLGSIQYGYHIAELNAPQEFLSCSRFEAPDENISYDDTWVGQHGLKQCIALTDSQYGAITSIFSIGGLFGSYYAGNWANRYGRKYVSMGASAMCMVSSLLLFFSNSYLQLLFGRFLVGMSCGTAIVITPLFINEIAPVEWRGAMGSMNQVSINLGILLTQTLALKYADSYNWRWLLFSGSVIAVANILAWLKVDESPRWLVSHGFVSEAETALFKLRPGTYQQAKQEIQDWQRSHGHNRDPESSEETHSGPTLWQYVTDPSYKKPRTVILAILSCQQFCGINSIIFYGVKVIGKILPDYSIQVNFAISILNVVVTLAASAIIDHVGRRPLLLASTTVMTAMSLLISVGLTLSVSFLLVTATFVYIAAFAIGLGPIPFLIIGELSYPQDAATAQSFGTVCNWLATFIVGYLFPIGHGLMGGYVFAIFAAIAAMFATYVYKRVPETKGKTTYSEVWPGY Saccharomycetes Saccharomyces_cerevisiae_EC1118 Saccharomyces_cerevisiae_EC1118 FN393060 674968..676434 Novo,M.,_Bigey,F.,_Beyne,E.,_Galeote,V.,_Gavory,F.,_Mallet,S.,_Cambot,B.,_Legras,J.L.,_Wincker,P.,_Casaregola,S._and_Dequin,S. NA 0:1467 On_Mar_10,_2010_this_sequence_version_replaced_gi:259144736. NA 10-MAR-2010 Saccharomyces_cerevisiae_EC1118_chromosome_II,_EC1118_1B15_genomic_scaffold,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_D3UEY9_YEAS8.gb Saccharomyces 290878045 Proc._Natl._Acad._Sci._U.S.A._106_(38),_16333-16338_(2009) fungi FN393060 NA NA budding_yeasts sac_fungi 19805302 1467 2 genomic_DNA NA Lalvin_EC1118 NA yeast NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 643680 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Eukaryote-to-eukaryote_gene_transfer_events_revealed_by_the_genome_sequence_of_the_wine_yeast_Saccharomyces_cerevisiae_EC1118 NA FN393060.2 TCAGTAGCCAGGCCAAACCTCGCTGTATGTAGTCTTGCCCTTTGTCTCGGGTACACGCTTGTACACATATGTAGCAAACATGGCAGCGATGGCGGCGAAGATCGCAAATACGTAGCCGCCCATGAGGCCGTGGCCTATCGGGAAGAGGTATCCGACGATGAAGGTGGCAAGCCAGTTGCACACAGTACCAAAACTTTGAGCTGTAGCGGCATCCTGCGGGTAGGATAGCTCACCAATGATCAAGAAGGGGATGGGTCCCAGACCGATGGCGAATGCGGCAATATAGACAAAAGTGGCCGTGACCAGTAAAAAGGATACGCTCAAGGTGAGACCTACACTGATCAGCAGCGACATGGCGGTCATCACCGTAGTCGAGGCAAGCAATAATGGACGGCGCCCGACGTGGTCGATGATCGCAGATGCTGCTAGAGTGACAACGACATTGAGGATGGAGATGGCAAAATTTACCTGAATCGAGTAGTCCGGTAGAATCTTGCCGATCACTTTTACACCGTAGAAGATAATAGAGTTGATGCCGCAAAATTGCTGGCACGACAAGATGGCGAGTATAACTGTGCGCGGTTTCTTGTATGAGGGATCGGTAACATATTGCCATAGTGTGGGTCCTGAATGAGTCTCTTCGCTTGACTCCGGGTCGCGGTTGTGCCCATGGCTACGCTGCCAATCCTGAATTTCTTGCTTCGCTTGTTGGTACGTTCCTGGACGCAACTTGAACAGAGCAGTTTCAGCTTCCGAGACGAATCCGTGGCTCACCAGCCACCTTGGAGATTCGTCCACTTTGAGCCAAGCTAAAATATTCGCTACCGCAATCACGGATCCGGAAAAGAGAAGCCACCTCCAGTTATAGGAGTCTGCGTACTTGAGTGCCAAGGTTTGGGTCAGCAGGATACCTAGATTGATAGAAACCTGATTCATAGATCCCATAGCGCCTCTCCACTCCACGGGGGCAATCTCGTTGATAAATAAGGGTGTGATCACAATGGCGGTGCCGCAGGACATGCCTACCAGGAACCTGCCAAATAGCAACTGCAAGTAGGAGTTGGAAAAGAAAAGCAGCAGAGAAGAAACCATGCACATGGCCGAGGCGCCCATGCTCACGTACTTTCTTCCGTATCGGTTGGCCCAGTTACCGGCGTAGTACGACCCAAACAGTCCGCCTATGCTGAATATAGACGTAATTGCGCCGTATTGAGAATCGGTTAACGCAATGCATTGCTTGAGTCCGTGTTGCCCAACCCAAGTGTCATCGTATGAGATGTTTTCGTCTGGTGCCTCAAATCTGGAGCACGATAAGAATTCTTGAGGCGCATTCAACTCTGCGATGTGGTATCCGTACTGGATCGACCCCAAACAAGCAACTATCGTGCCCAAGATTAAATGGCCCGTAATTAACGGTTTTGTTTCGCGGGAACCACCGTTAGGCATTAGTCTTTCAGTTTCAGCCAT > 992 YOL156W Putative_hexose_transporter_that_is_nearly_identical_to_Hxt9p,_has_similarity_to_major_facilitator_superfamily_(MFS)_transporters_and_is_involved_in_pleiotropic_drug_resistance Hxt11p NP_014486.1 NA MSGVNNTSANELSTTMSNSNSAVGAPSVKTEHGDSKNSLNLDANEPPIDLPQKPLSAYTTVAILCLMIAFGGFIFGWDTGTISGFVNLSDFIRRFGQKNDKGTYYLSKVRMGLIVSIFNIGCAIGGIVLSKVGDIYGRRIGLITVTAIYVVGILIQITSINKWYQYFIGRIISGLGVGGIAVLSPMLISEVAPKHIRGTLVQLYQLMGTMGIFLGYCTNYGTKNYHNATQWRVGLGLCFAWATFMVSGMMFVPESPRYLIEVGKDEEAKRSLSKSNKVSVDDPALLVEYDTIKAGIELEKLAGNASWSELLSTKTKVFQRVLMGVMIQSLQQLTGDNYFFYYGTTIFKSVGLKDSFQTSIIIGVVNFFSSFIAVYTIERFGRRTCLLWGAASMLCCFAVFASVGVTKLWPQGSSHQDITSQGAGNCMIVFTMFFIFSFATTWAGGCYVIVSETFPLRVKSRGMAIATAANWMWGFLISFFTPFITGAINFYYGYVFLGCLVFAYFYVFFFVPETKGLTLEEVNTMWLEGVPAWKSASWVPPERRTADYDADAIDHDNRPIYKRFFSS Saccharomycetes Saccharomyces_cerevisiae_S288c Saccharomyces_cerevisiae_S288c NM_001183409 NA Dujon,B.,_Albermann,K.,_Aldea,M.,_Alexandraki,D.,_Ansorge,W.,_Arino,J.,_Benes,V.,_Bohn,C.,_Bolotin-Fukuhara,M.,_Bordonne,R.,_Boyer,J.,_Camasses,A.,_Casamayor,A.,_Casas,C.,_Cheret,G.,_Cziepluch,C.,_Daignan-Fornier,B.,_Dang,D.V.,_de_Haan,M.,_Delius,H.,_Durand,P.,_Fairhead,C.,_Feldmann,H.,_Gaillon,L.,_Kleine,K._et_al. NA 0:1704 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_001147).COMPLETENESS:_incomplete_on_both_ends. NA 26-APR-2011 Saccharomyces_cerevisiae_S288c_Hxt11p_(HXT11)_mRNA,_complete_cds. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_HXT11_YEAST.gb Saccharomyces 296147852 Nature_387_(6632_SUPPL),_98-102_(1997) fungi NM_001183409 NA NA budding_yeasts sac_fungi 9169874 1704 XV mRNA NA S288c NA yeast NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 559292 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces The_nucleotide_sequence_of_Saccharomyces_cerevisiae_chromosome_XV NA NM_001183409.1 ATGTCAGGTGTTAATAATACATCCGCAAATGAGTTATCTACTACCATGTCTAACTCTAACTCAGCAGTAGGCGCTCCCTCTGTTAAGACTGAACACGGTGACTCTAAAAATTCCCTTAACCTAGATGCCAATGAGCCACCTATTGACTTACCTCAAAAACCCCTCTCTGCGTATACCACCGTCGCAATCCTGTGTTTGATGATTGCATTTGGCGGCTTCATCTTTGGTTGGGATACCGGTACCATTTCTGGTTTTGTTAACCTTTCTGATTTCATCAGAAGGTTCGGTCAAAAAAATGACAAGGGAACCTACTACTTATCGAAAGTAAGAATGGGTTTGATCGTCTCAATATTCAACATTGGCTGCGCCATAGGCGGAATTGTCTTGTCAAAAGTCGGTGATATATATGGTCGTCGTATTGGATTGATTACAGTTACTGCCATTTACGTTGTAGGCATCCTAATCCAAATAACTTCCATAAACAAGTGGTACCAATACTTCATTGGAAGAATTATTTCTGGCCTAGGAGTGGGAGGCATTGCTGTCCTTTCCCCAATGTTGATATCTGAAGTTGCTCCCAAACATATCAGAGGAACTCTGGTCCAATTGTACCAGCTGATGGGTACGATGGGTATTTTTCTAGGATACTGTACCAATTACGGTACCAAGAACTATCACAACGCCACTCAATGGAGAGTCGGCCTTGGTCTTTGCTTTGCCTGGGCTACATTCATGGTTAGTGGAATGATGTTTGTACCAGAATCACCACGTTACCTGATTGAGGTTGGTAAAGATGAGGAAGCGAAACGTTCACTATCGAAATCCAACAAAGTCTCAGTTGACGATCCAGCCTTGCTAGTTGAATATGACACTATAAAGGCAGGAATTGAACTTGAAAAGCTGGCAGGTAACGCATCATGGTCTGAACTACTCTCCACTAAAACAAAGGTCTTTCAGCGTGTTCTCATGGGAGTGATGATCCAATCGCTGCAGCAATTAACCGGTGACAACTACTTCTTTTACTACGGTACCACCATCTTCAAATCTGTCGGTCTAAAGGACTCCTTTCAGACTTCGATCATTATCGGTGTGGTTAATTTTTTCTCTTCATTCATAGCGGTATACACCATTGAGAGGTTTGGACGCCGTACGTGTCTATTGTGGGGTGCTGCTTCTATGCTATGCTGCTTTGCTGTGTTTGCCTCCGTCGGTGTGACAAAGTTGTGGCCTCAAGGAAGCAGTCACCAAGACATTACTTCTCAGGGCGCCGGTAACTGTATGATTGTGTTTACTATGTTCTTCATTTTTTCGTTCGCCACCACTTGGGCAGGCGGCTGTTACGTTATTGTCTCAGAGACGTTTCCTCTTAGGGTCAAATCAAGAGGAATGGCAATCGCAACAGCTGCAAACTGGATGTGGGGTTTCCTGATTAGTTTCTTTACCCCATTCATTACCGGGGCAATCAACTTTTACTACGGTTACGTATTCTTAGGCTGTCTGGTTTTTGCATACTTTTATGTCTTTTTCTTTGTCCCAGAAACAAAAGGCCTGACACTGGAGGAGGTGAATACTATGTGGCTGGAAGGTGTGCCAGCATGGAAATCGGCCTCATGGGTGCCACCGGAGAGAAGAACCGCAGATTACGATGCTGATGCAATAGATCATGACAATAGACCAATTTACAAGAGGTTCTTTTCCAGCTGA > 993 SCY_2486 High-affinity_glucose_transporter_of_the_major_facilitator_superfamily,_expression_is_induced_by_low_levels_of_glucose_and_repressed_by_high_levels_of_glucose;_original_gene_id:yorf4.08.100.126 hexose_transporter EDN62333.1 NA MSEEAAYQEDTAVQNTPADALSPVESDSNSALSTPSNKAERDDMKDFDENHEESNNYVEIPKKPASAYVTVSICCLMVAFGGFVFGWDTGTISGFVAQTDFIRRFGMKHHDGTYYLSKVRTGLIVSIFNIGCAIGGIILARLGDMYGRKMGLIVVVVIYIIGIIIQIASINKWYQYFIGRIISGLGVGGIAVLSPMLISEVSPKHIRGTLVSCYQLMITLGIFLGYCTNYGTKTYTNSVQWRVPLGLGFAWALFMIGGMTFVPESPRYLVEVGKIEEAKRSIALSNKVSADDPAVMAEVEVVQATVEAEKLAGNASWGEIFSTKTKVFQRLIMGAMIQSLQQLTGDNYFFYYGTTVFTAVGLEDSFETSIVLGIVNFASTFVGIFLVERYGRRRCLLWGAASMTACMVVFASVGVTRLWPNGKKNGSSKGAGNCMIVFTCFYLFCFATTWAPIPFVVNSETFPLRVKSKCMAIAQACNWIWGFLIGFFTPFISGAIDFYYGYVFMGCLVFSYFYVFFFVPETKGLTLEEVNTLWEEGVLPWKSPSWVPPNKRGTDYNADDLMHDDQPFYKKMFGKK Saccharomycetes Saccharomyces_cerevisiae_YJM789 Saccharomyces_cerevisiae_YJM789 AAFW02000082 194873..196603 Wei,W.,_McCusker,J.H.,_Hyman,R.W.,_Jones,T.,_Ning,Y.,_Cao,Z.,_Gu,Z.,_Bruno,D.,_Miranda,M.,_Nguyen,M.,_Wilhelmy,J.,_Komp,C.,_Tamse,R.,_Wang,X.,_Jia,P.,_Luedi,P.,_Oefner,P.J.,_David,L.,_Dietrich,F.S.,_Li,Y.,_Davis,R.W._and_Steinmetz,L.M. NA 0:1731 This_version_of_the_project_represents_approximately_98%_coverageof_the_genome.The_mitochondrial_genome_is_GenBank_Accession_Number_EU004203. NA 13-JUL-2007 Saccharomyces_cerevisiae_YJM789_chromosome_8_chrVIII.Contig100,_whole_genome_shotgun_sequence. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_HXT4_YEAS7.gb Saccharomyces 151943931 Proc._Natl._Acad._Sci._U.S.A._104_(31),_12825-12830_(2007) fungi AAFW02000082 hexose_transporter NA budding_yeasts sac_fungi 17652520 1731 8 genomic_DNA NA YJM789 NA yeast NA complement NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 307796 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces Genome_sequencing_and_comparative_analysis_of_Saccharomyces_cerevisiae_strain_YJM789 Saccharomyces_cerevisiae_YJM789 AAFW02000082.1 CTACTTTTTTCCGAACATCTTCTTGTAAAATGGTTGATCATCATGCATTAGATCATCAGCGTTGTAGTCAGTACCTCTCTTGTTTGGTGGAACCCAAGAAGGTGATTTCCATGGCAAAACACCTTCTTCCCATAAGGTGTTAACTTCTTCTAAAGTCAAACCTTTAGTTTCTGGAACGAAGAAGAAGACGTAGAAGTAAGAAAAGACCAAACAGCCCATGAAAACATAACCGTAGTAGAAATCAATAGCACCTGAAATAAATGGAGTAAAGAAACCAATCAAGAAACCCCAGATCCAGTTACAAGCTTGAGCAATAGCCATACACTTGGACTTAACTCTCAATGGGAAAGTTTCAGAGTTAACAACAAATGGAATTGGAGCCCAGGTGGTGGCAAAACAGAATAAGTAGAAACATGTGAAGACAATCATACAGTTACCAGCACCCTTAGAAGACCCGTTCTTCTTACCATTTGGCCACAATCTTGTAACACCAACAGAAGCGAAAACAACCATACAAGCTGTCATGGAAGCAGCACCCCATAATAAACATCTACGACGACCATATCTTTCGACTAAGAAAATACCAACAAAGGTGGAAGCAAAGTTAACAATACCCAAGACAATAGAGGTTTCAAAAGAATCTTCCAAACCGACAGCAGTGAAAACGGTAGTACCGTAATAGAAGAAATAGTTATCACCTGTCAATTGTTGCAATGATTGAATCATAGCACCCATGATCAAACGTTGGAAAACCTTAGTCTTAGTGCTAAATATTTCACCCCAGGAGGCATTACCAGCTAATTTTTCAGCTTCAACTGTAGCTTGAACAACTTCGACTTCAGCCATAACAGCTGGATCGTCTGCGCTGACCTTATTTGAAAGAGCAATAGAACGCTTAGCTTCTTCAATTTTACCGACTTCAACTAAATAACGTGGAGATTCTGGAACGAATGTCATACCACCAATCATAAACAAAGCCCAAGCGAAACCTAGACCTAATGGAACTCTCCATTGAACAGAATTGGTGTAGGTCTTGGTACCGTAGTTTGTACAGTAACCCAAGAAAATACCCAAAGTAATCATAAGTTGGTAACATGAAACCAAAGTACCTCTAATATGCTTTGGAGAGACTTCAGAAATCAACATAGGAGATAAAACGGCAATACCACCGACACCTAAACCAGAGATAATTCTACCAATGAAATATTGGTACCACTTGTTGATCGAGGCAATTTGGATAATGATACCGATAATGTAGATGACAACAACGACAATCAAACCCATTTTACGACCATACATATCACCTAATCTTGCTAAAATAATACCACCAATGGCACAACCAATGTTGAAAATGGAGACAATTAAACCAGTTCTAACCTTAGACAAATAATAAGTACCATCGTGGTGCTTCATACCAAATCTTCTGATAAAATCAGTTTGAGCAACAAAACCAGAAATGGTACCAGTATCCCAACCGAAAACAAAACCACCGAAAGCAACCATTAAACAACAGATGGAAACTGTAACGTAGGCGGAGGCGGGCTTCTTTGGAATTTCAACGTAGTTATTAGATTCTTCGTGATTCTCGTCGAAATCTTTCATGTCATCTCTTTCAGCTTTGTTGGATGGAGTAGACAAAGCGGAATTAGAATCGGATTCAACTGGCGACAAAGCATCAGCTGGAGTATTTTGGACTGCTGTATCCTCTTGATAGGCAGCTTCTTCAGACAT > 994 YDL194W Plasma_membrane_low_glucose_sensor_that_regulates_glucose_transport;_contains_12_predicted_transmembrane_segments_and_a_long_C-terminal_tail_required_for_induction_of_hexose_transporters;_also_senses_fructose_and_mannose;_similar_to_Rgt2p Snf3p NP_010087.1 NA MDPNSNSSSETLRQEKQGFLDKALQRVKGIALRRNNSNKDHTTDDTTGSIRTPTSLQRQNSDRQSNMTSVFTDDISTIDDNSILFSEPPQKQSMMMSICVGVFVAVGGFLFGYDTGLINSITSMNYVKSHVAPNHDSFTAQQMSILVSFLSLGTFFGALTAPFISDSYGRKPTIIFSTIFIFSIGNSLQVGAGGITLLIVGRVISGIGIGAISAVVPLYQAEATHKSLRGAIISTYQWAITWGLLVSSAVSQGTHARNDASSYRIPIGLQYVWSSFLAIGMFFLPESPRYYVLKDKLDEAAKSLSFLRGVPVHDSGLLEELVEIKATYDYEASFGSSNFIDCFISSKSRPKQTLRMFTGIALQAFQQFSGINFIFYYGVNFFNKTGVSNSYLVSFITYAVNVVFNVPGLFFVEFFGRRKVLVVGGVIMTIANFIVAIVGCSLKTVAAAKVMIAFICLFIAAFSATWGGVVWVISAELYPLGVRSKCTAICAAANWLVNFICALITPYIVDTGSHTSSLGAKIFFIWGSLNAMGVIVVYLTVYETKGLTLEEIDELYIKSSTGVVSPKFNKDIRERALKFQYDPLQRLEDGKNTFVAKRNNFDDETPRNDFRNTISGEIDHSPNQKEVHSIPERVDIPTSTEILESPNKSSGMTVPVSPSLQDVPIPQTTEPAEIRTKYVDLGNGLGLNTYNRGPPSLSSDSSEDYTEDEIGGPSSQGDQSNRSTMNDINDYMARLIHSTSTASNTTDKFSGNQSTLRYHTASSHSDTTEEDSNLMDLGNGLALNAYNRGPPSILMNSSDEEANGGETSDNLNTAQDLAGMKERMAQFAQSYIDKRGGLEPETQSNILSTSLSVMADTNEHNNEILHSSEENATNQPVNENNDLK Saccharomycetes Saccharomyces_cerevisiae_S288c Saccharomyces_cerevisiae_S288c NM_001180254 NA Jacq,C.,_Alt-Morbe,J.,_Andre,B.,_Arnold,W.,_Bahr,A.,_Ballesta,J.P.,_Bargues,M.,_Baron,L.,_Becker,A.,_Biteau,N.,_Blocker,H.,_Blugeon,C.,_Boskovic,J.,_Brandt,P.,_Bruckner,M.,_Buitrago,M.J.,_Coster,F.,_Delaveau,T.,_del_Rey,F.,_Dujon,B.,_Eide,L.G.,_Garcia-Cantalejo,J.M.,_Goffeau,A.,_Gomez-Peris,A.,_Zaccaria,P._et_al. NA 0:2655 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_001136).COMPLETENESS:_incomplete_on_both_ends. NA 26-APR-2011 Saccharomyces_cerevisiae_S288c_Snf3p_(SNF3)_mRNA,_complete_cds. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_SNF3_YEAST.gb Saccharomyces 296143177 Nature_387_(6632_SUPPL),_75-78_(1997) fungi NM_001180254 NA NA budding_yeasts sac_fungi 9169867 2655 IV mRNA NA S288c NA yeast NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 559292 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces The_nucleotide_sequence_of_Saccharomyces_cerevisiae_chromosome_IV NA NM_001180254.1 ATGGATCCTAATAGTAACAGTTCTAGCGAAACATTACGCCAAGAGAAACAGGGTTTCCTAGACAAAGCTCTTCAGAGGGTGAAGGGCATAGCACTGCGACGAAACAATAGTAACAAAGATCATACAACAGATGATACGACAGGTAGCATACGAACCCCTACGAGCTTGCAGCGGCAAAATTCTGACAGGCAATCTAATATGACATCCGTGTTTACGGATGACATTTCTACCATAGACGACAACTCAATTTTATTTTCAGAGCCTCCTCAGAAACAATCTATGATGATGTCTATATGCGTAGGTGTTTTTGTTGCAGTTGGCGGATTTTTATTTGGTTATGATACAGGTCTGATCAACAGTATTACATCTATGAACTATGTGAAGTCACACGTAGCACCTAATCACGATTCATTTACCGCCCAACAAATGTCCATTTTGGTGTCATTTTTGTCATTGGGAACTTTTTTTGGGGCTTTAACTGCACCATTTATATCTGATTCGTATGGCAGGAAGCCTACTATCATTTTCAGTACAATTTTCATCTTCTCTATCGGAAATTCTTTACAGGTAGGTGCTGGAGGAATCACATTATTGATTGTGGGAAGGGTCATTTCAGGTATCGGTATAGGCGCAATTTCAGCGGTTGTTCCATTATACCAAGCAGAAGCTACACATAAATCATTAAGAGGTGCTATTATTTCTACTTACCAATGGGCCATTACCTGGGGCTTGCTCGTGTCAAGTGCAGTGTCGCAAGGGACACACGCAAGAAACGACGCATCTTCGTATCGGATTCCCATAGGGTTGCAATATGTCTGGTCGTCATTTCTCGCTATCGGGATGTTCTTTCTCCCTGAGAGTCCACGCTATTACGTTTTGAAAGACAAGCTAGATGAAGCAGCTAAATCTTTATCGTTTTTAAGAGGTGTACCAGTCCATGATTCTGGGTTACTGGAAGAACTAGTTGAAATAAAGGCAACATATGATTACGAGGCATCTTTTGGTTCTTCGAACTTCATTGATTGTTTTATTTCAAGTAAAAGTAGACCAAAGCAAACTCTAAGGATGTTTACGGGAATTGCCCTTCAAGCATTTCAACAATTTTCAGGTATCAACTTTATATTTTACTACGGTGTCAATTTCTTCAATAAGACAGGAGTCAGTAATAGTTATCTGGTTTCATTTATAACCTATGCTGTTAATGTTGTCTTTAATGTTCCTGGTTTGTTTTTTGTGGAATTTTTTGGTAGACGTAAGGTGCTGGTTGTTGGGGGTGTTATCATGACTATAGCCAACTTTATTGTGGCCATTGTTGGGTGTTCCTTAAAGACTGTAGCGGCCGCAAAAGTTATGATAGCATTTATATGTCTATTCATAGCTGCCTTTTCTGCTACATGGGGTGGTGTTGTTTGGGTTATTTCAGCAGAACTGTACCCATTGGGTGTGAGATCTAAATGTACGGCTATATGCGCTGCTGCTAACTGGCTTGTAAACTTTATTTGTGCTTTAATTACCCCTTATATTGTAGATACTGGGTCGCATACATCATCATTAGGTGCAAAAATATTCTTCATTTGGGGCTCCTTAAATGCGATGGGGGTGATAGTTGTTTACTTGACCGTTTATGAAACGAAGGGTTTGACATTAGAAGAGATTGATGAATTATATATTAAGTCATCCACTGGTGTCGTGTCACCAAAATTTAATAAAGATATTAGGGAACGCGCACTTAAATTCCAATACGATCCTTTGCAAAGATTAGAAGACGGAAAGAACACTTTTGTTGCTAAAAGAAATAATTTTGACGATGAAACACCAAGAAATGATTTTCGAAATACGATATCGGGCGAAATAGATCATAGTCCCAATCAAAAAGAAGTTCATTCTATCCCAGAACGTGTTGATATTCCTACTAGTACAGAAATTCTTGAAAGCCCGAACAAAAGTAGTGGTATGACAGTCCCTGTGTCACCTTCTCTGCAAGACGTTCCAATCCCGCAAACAACAGAGCCTGCTGAAATTCGAACCAAATATGTGGACCTAGGAAATGGGCTTGGTCTTAATACGTATAATAGAGGGCCTCCCTCACTCTCAAGCGACTCAAGCGAAGATTACACAGAAGATGAAATAGGCGGGCCCTCATCTCAAGGCGACCAAAGTAATAGAAGTACTATGAATGATATTAATGATTATATGGCACGTCTCATTCACAGTACTTCTACTGCAAGTAACACGACAGATAAGTTCTCCGGTAACCAAAGTACCCTTCGTTACCACACGGCTTCCTCACATTCGGATACAACTGAAGAGGACAGCAATTTGATGGACCTGGGAAACGGGCTTGCCTTGAATGCTTATAACAGAGGTCCACCTTCAATTTTAATGAATTCCAGTGATGAAGAGGCAAATGGTGGTGAGACGTCTGATAATTTGAACACAGCTCAAGACTTGGCTGGTATGAAGGAACGAATGGCGCAGTTTGCGCAGAGCTATATTGACAAGAGAGGCGGTCTGGAACCTGAAACTCAATCTAATATTTTGAGCACTTCTCTCTCCGTGATGGCTGACACTAATGAACATAATAATGAAATCCTCCACTCAAGCGAAGAAAACGCCACTAATCAACCTGTAAATGAAAATAATGATTTGAAATAA > 995 YDL199C Putative_transporter,_member_of_the_sugar_porter_family hypothetical_protein NP_010082.1 NA MKPPLNMSRSNKPLTQEANSSAHIDRAHQLAQDFNSKQDDTALTSLPHKNPDIFRFENNITAHSSRRGSLYRDSDATVVLPLSEHTPRLSMDDPYRQLLQQAEISQLRSKKKRHSSRVLRTSFISFVVLVSSLSGLDQGLISGNVMTLSFQKYFHYPLTSPLGNIVSIVNLGAFMASLFVYSGILEPCSRKKMLQISTMIYSLGAIVQVLALNQWCLLLGRFLLGVGMGFAFSMVIIYQFEFPLPCIRKRTLISIQCVSSVIAYSFGIWINCAFRYLGFAWRYPLSTHVALGIILNLMSFYLILESPSWLLKQKNDVEALVLISNVFDDGNFEENQTQLKFRVLKRDILLKSHLQKNSYPYAYILKDFSSIIKLLIGFQLLTRTNGVDAFLYYSPLILQQMGRGERKSIYLTGLNALIYSIVILAYVPLVLRKRKEKTNVLLGSIVMCALLFTISFTDWFPKSTTRYISILFAVFLFTHFISWDSIGWVMTIELLPHLSQAPVILLVSNFYWIFKWFVSLITPILIDRLSWKFYLIPSLSSFISIIFVLKIFPIETRDERLDSDDDSTGNGSGNHDDVFDDTGSEFSSSPSFSAYQINTLGSSIKQNNQAYSSIQNEQILPKNGNLSNQTHGSAQNVYFITSDSGPSRTGEFFSFHNRTDPNISDNIAANKPSSGGGQNSPGDMAVA Saccharomycetes Saccharomyces_cerevisiae_S288c Saccharomyces_cerevisiae_S288c NM_001180259 NA Jacq,C.,_Alt-Morbe,J.,_Andre,B.,_Arnold,W.,_Bahr,A.,_Ballesta,J.P.,_Bargues,M.,_Baron,L.,_Becker,A.,_Biteau,N.,_Blocker,H.,_Blugeon,C.,_Boskovic,J.,_Brandt,P.,_Bruckner,M.,_Buitrago,M.J.,_Coster,F.,_Delaveau,T.,_del_Rey,F.,_Dujon,B.,_Eide,L.G.,_Garcia-Cantalejo,J.M.,_Goffeau,A.,_Gomez-Peris,A.,_Zaccaria,P._et_al. NA 0:2064 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_001136).COMPLETENESS:_incomplete_on_both_ends. NA 26-APR-2011 Saccharomyces_cerevisiae_S288c_hypothetical_protein_(YDL199C)_mRNA,_complete_cds. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharomyces_cerevisiae_YD199_YEAST.gb Saccharomyces 296143173 Nature_387_(6632_SUPPL),_75-78_(1997) fungi NM_001180259 NA NA budding_yeasts sac_fungi 9169867 2064 IV mRNA NA S288c NA yeast NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 559292 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Saccharomyces The_nucleotide_sequence_of_Saccharomyces_cerevisiae_chromosome_IV NA NM_001180259.1 ATGAAACCTCCGTTAAACATGTCACGTTCAAATAAACCACTTACTCAGGAAGCTAATAGTTCGGCGCATATTGATAGGGCACATCAGCTAGCACAGGATTTTAACAGTAAACAGGATGATACCGCACTAACTTCACTGCCCCACAAGAACCCCGACATATTCAGATTTGAGAACAACATCACAGCTCATAGCTCGCGTCGTGGTTCTCTATATAGAGACAGCGATGCTACTGTGGTTTTGCCGCTTTCTGAACATACCCCTAGATTATCAATGGATGATCCATACCGCCAATTACTACAACAGGCTGAAATCTCACAACTACGAAGTAAGAAAAAAAGGCATTCCAGTCGAGTTTTGCGTACTTCGTTTATATCTTTTGTGGTGCTAGTTTCCTCGCTGTCAGGGTTGGACCAAGGCCTCATATCTGGTAACGTTATGACTTTGTCGTTCCAGAAGTATTTTCATTACCCACTTACTTCTCCGCTGGGCAATATAGTGAGCATTGTTAATCTGGGTGCGTTCATGGCGTCGTTATTTGTCTATTCTGGCATCCTGGAGCCTTGTAGCAGGAAAAAAATGCTCCAAATAAGCACAATGATATACTCTTTGGGTGCCATTGTTCAGGTCTTGGCTCTAAACCAATGGTGTTTACTACTGGGTAGATTCTTACTCGGAGTAGGTATGGGCTTTGCCTTTTCTATGGTAATAATTTATCAATTCGAGTTTCCCCTTCCCTGTATAAGAAAACGGACATTAATTTCCATTCAATGCGTCTCTAGTGTCATTGCGTATTCATTCGGAATATGGATTAATTGTGCTTTCAGATATTTGGGCTTTGCATGGAGATACCCTTTGTCAACACATGTGGCACTTGGAATAATACTAAACCTAATGTCGTTCTATCTTATTTTAGAGTCCCCTTCGTGGCTGTTGAAGCAAAAGAACGACGTAGAGGCATTGGTTTTAATATCGAATGTTTTCGATGATGGAAATTTCGAAGAAAACCAAACTCAGTTGAAATTTAGGGTCCTGAAACGAGACATATTATTAAAGTCACACCTTCAAAAAAACTCCTATCCATATGCGTATATCTTAAAGGATTTTTCTTCAATAATAAAATTGTTGATAGGTTTCCAACTTCTCACACGAACAAATGGAGTGGATGCTTTCTTGTATTACTCACCGTTAATATTACAACAAATGGGGAGAGGAGAAAGAAAATCTATCTATTTAACGGGGCTTAATGCTTTAATTTACAGCATCGTAATATTAGCATATGTTCCCTTGGTGTTACGGAAACGTAAAGAGAAAACGAATGTACTCTTAGGTTCGATTGTGATGTGTGCATTGCTATTTACCATATCTTTTACAGACTGGTTTCCCAAGAGCACAACGAGGTATATATCAATACTATTTGCTGTTTTTCTTTTTACGCACTTCATCAGTTGGGATTCTATAGGATGGGTTATGACCATTGAGCTTCTACCTCACTTGTCACAGGCCCCAGTGATACTACTAGTCTCAAACTTTTATTGGATTTTTAAGTGGTTCGTCAGCTTAATAACCCCTATACTTATTGACCGTCTGTCTTGGAAGTTTTATCTTATTCCATCTTTATCTTCCTTTATTTCCATTATATTTGTGCTGAAGATTTTTCCTATAGAAACCCGTGACGAAAGGTTAGATTCTGATGATGATTCTACCGGAAACGGTAGCGGTAACCATGATGATGTTTTTGACGATACCGGTTCTGAATTCTCCTCCTCACCATCTTTTTCCGCGTATCAGATAAACACTCTAGGAAGTAGTATCAAACAAAATAATCAAGCCTATTCATCTATTCAAAATGAGCAGATTCTACCCAAAAACGGAAACTTATCGAACCAGACACACGGTTCTGCACAAAATGTTTATTTCATTACATCTGATTCAGGACCATCAAGGACTGGAGAATTTTTCAGTTTTCATAACAGAACCGATCCAAATATCAGCGACAACATTGCTGCGAATAAACCCAGTTCAGGTGGAGGCCAGAATTCGCCTGGAGACATGGCAGTTGCCTAG > 996 Sde_1031 NA putative_metabolite_transport_protein_CsbC YP_526505.1 11 MLLACAQQITGINAIYFYAPTIFEQSGVGTNAAFAQAALIGLINVLFTIVAMGLIDKVGRKPLLLIGLTGVAISMSLCAWEFKQAHYKIENAAIFEELNIPAPMNLVGVTFNSDTEFKQALRIELGDLAAKDYEAKLISNAIQFNAKLFLFGILLFVASFAVSLGPVMWVLLPEIFPNHLRGVGMALTGLVNSAVSFSVQLVFPWELSQLGAALTFFIYGAFALLGCILVARYLPETKGKSLEELEATFIK gamma_subgroup Saccharophagus_degradans_2-40 Saccharophagus_degradans_2-40 NC_007912 1319480..1320235 Fraiberg,M.,_Borovok,I.,_Weiner,R.M._and_Lamed,R. NA 0:756 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000282.URL_--_http://www.jgi.doe.govJGI_Project_ID:_2662192Source_DNA_and_bacteria_available_from_Ronald_Weiner(rw19@umail.umd.edu)Contacts:_Ronald_Wiener_(rw19@umail.umd.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 20-JAN-2012 Saccharophagus_degradans_2-40_chromosome,_complete_genome. NA Marinobacter_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharophagus_degradans_Q21LY6_SACD2.gb Saccharophagus_Ekborg_et_al._2005 90019649 J._Bacteriol._192_(4),_1066-1074_(2010) NA NC_007912 NA NA Alteromonadales_Bowman_and_McMeekin_2005 purple_photosynthetic_bacteria_and_relatives 20023015 756 NA genomic_DNA NA 2-40 NA Saccharophagus_degradans_Ekborg_et_al._2005 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 203122 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Alteromonadales,_Alteromonadaceae,_Saccharophagus Discovery_and_characterization_of_cadherin_domains_in_Saccharophagus_degradans_2-40 NA NC_007912.1 CTATTTAATAAATGTTGCCTCTAGCTCCTCTAACGATTTACCTTTTGTTTCTGGCAAGTAGCGAGCAACTAAAATACAGCCCAGTAGTGCGAAGGCGCCGTAGATAAAAAATGTAAGTGCGGCGCCCAGCTGACTTAGCTCCCACGGGAATACAAGCTGTACGCTAAAGCTTACTGCGCTATTGACTAAGCCGGTAAGTGCCATGCCTACACCGCGCAGGTGGTTGGGGAATATTTCTGGAAGTAATACCCACATTACTGGGCCAAGGGATACGGCAAACGATGCTACAAATAATAAAATACCAAACAAAAATAATTTGGCATTAAACTGAATCGCATTGCTAATAAGTTTTGCTTCGTAATCTTTTGCTGCTAGGTCTCCTAGCTCTATGCGGAGCGCTTGTTTAAATTCGGTATCGCTGTTAAATGTTACGCCAACTAAGTTCATTGGGGCTGGTATGTTGAGCTCTTCAAAAATGGCGGCGTTTTCTATTTTATAGTGAGCTTGTTTAAATTCCCATGCGCATAAGCTCATACTTATGGCTACACCAGTAAGGCCTATTAATAGCAATGGCTTGCGGCCAACTTTATCAATTAAACCCATGGCTACAATGGTAAATAATACGTTTATTAAGCCAATGAGTGCCGCTTGGGCAAAGGCGGCGTTGGTGCCTACACCGCTTTGTTCGAATATTGTGGGTGCATAAAAATAAATGGCGTTAATGCCGGTAATTTGTTGTGCGCAGGCAAGTAGCAA > 997 SACE_2512 NA MFS_sugar_transporter YP_001104730.1 11 MDSSSLQTPPSGRISTGEVAARLERLPWTSYQRSLFLIIATAWLFDSIDLGALTHLLAPISAEFGLTKLQAGLVGSATFAGMFIGAVGAGVLADRFGRLKVFKYSIIIWGSASVLLALSWDFASLASFRLLLGIGMGAEFPVAAALLSEFMPSSRRGRYVALMEGTWPTGFILAGIGSFVLLSTTLGWRGFFLAQALLAVVALIVRRNLPESPRWQVSRGRHADAIATLEHVERKTEAAFGRPLLAPGPIDDRDTTGQQAGLRALFTDGYRKRTLASWTMWFCLLGGYYGLTTWIGKLLSDAGYDMVESVGYIVLMALWGIPGFLAAAWLIERIGRKFCLVGFSLSSAAAAFVYGNASGVTELIISGSVLQFIFFGMFSSIFAYTPELFPTRARAIGMGSSTAAGRLGSIFGPVVVPLVIAAQGPSVVFAASAVLFVTGSVVAILFLPETRQTVLEDISS high_GC_Gram+ Saccharopolyspora_erythraea_NRRL_2338 Saccharopolyspora_erythraea_NRRL_2338 NC_009142 2723508..2724890 Oliynyk,M.,_Samborskyy,M.,_Lester,J.B.,_Mironenko,T.,_Scott,N.,_Dickens,S.,_Haydock,S.F._and_Leadlay,P.F. NA 0:1383 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM420293.Project:_18489.COMPLETENESS:_full_length. NA 26-JAN-2012 Saccharopolyspora_erythraea_NRRL_2338_chromosome,_complete_genome. NA Pseudonocardiaceae_Embley_et_al._1989_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharopolyspora_erythraea_A4FCN0_SACEN.gb Saccharopolyspora_Lacey_and_Goodfellow_1975_(Approved_Lists_1980)_emend._Korn-Wendisch_et_al._1989 134096620 Nat._Biotechnol._25_(4),_447-453_(2007) NA NC_009142 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 17369815 1383 NA genomic_DNA NA NRRL_2338 NA Streptomyces_erythraeus_(Waksman_1923)_Waksman_and_Henrici_1948_(Approved_Lists_1980) NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Pseudonocardineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 405948 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Pseudonocardineae,_Pseudonocardiaceae,_Saccharopolyspora Complete_genome_sequence_of_the_erythromycin-producing_bacterium_Saccharopolyspora_erythraea_NRRL23338 NA NC_009142.1 TTGGACTCCTCATCCCTGCAGACCCCACCCAGCGGCCGCATCAGCACCGGTGAAGTCGCCGCCCGGCTCGAACGACTGCCCTGGACCAGCTACCAGCGCAGCCTGTTCCTGATCATCGCCACCGCGTGGCTGTTCGACTCGATCGACCTCGGCGCCCTGACGCACCTGCTCGCCCCGATCAGCGCCGAGTTCGGGCTGACCAAGCTGCAGGCCGGCCTCGTGGGCAGCGCCACCTTCGCCGGCATGTTCATCGGCGCCGTCGGCGCCGGCGTCCTGGCCGACCGGTTCGGCCGACTCAAGGTATTCAAGTACAGCATCATCATCTGGGGCTCGGCCAGCGTGTTGCTCGCGCTGTCCTGGGACTTCGCCAGCCTCGCCTCGTTCCGACTGCTGCTGGGCATCGGCATGGGCGCGGAATTCCCCGTCGCCGCCGCCCTGCTGTCCGAGTTCATGCCGTCGTCCAGGCGCGGCCGCTACGTCGCGCTGATGGAGGGCACCTGGCCCACCGGATTCATCCTCGCCGGCATCGGATCGTTCGTGCTGCTGTCAACGACCCTGGGTTGGCGCGGCTTCTTCCTCGCCCAGGCCCTGCTCGCCGTCGTCGCGCTCATCGTGCGCCGCAACCTGCCCGAATCTCCCCGCTGGCAGGTCTCCCGTGGCCGCCACGCAGACGCTATCGCCACCCTCGAGCACGTCGAACGCAAGACCGAAGCCGCTTTCGGTCGTCCCCTGCTCGCCCCCGGACCGATCGACGACCGCGACACGACAGGGCAGCAGGCAGGGCTGCGGGCGCTGTTCACCGACGGCTACCGCAAGCGGACCCTGGCCAGCTGGACGATGTGGTTCTGCCTGCTCGGCGGCTACTACGGCCTCACCACCTGGATCGGCAAGCTCCTCAGCGACGCCGGCTACGACATGGTCGAGTCCGTCGGCTACATCGTCCTCATGGCCCTGTGGGGCATCCCCGGGTTCCTTGCCGCCGCCTGGCTCATCGAACGGATCGGGCGCAAGTTCTGCCTGGTCGGCTTCTCCCTGTCCTCGGCAGCAGCAGCGTTCGTCTACGGCAACGCCTCCGGCGTCACCGAGCTGATCATCTCCGGGTCGGTCCTGCAGTTCATCTTCTTCGGGATGTTCTCCTCGATCTTCGCCTACACCCCGGAGCTGTTCCCCACCCGTGCCCGCGCCATCGGAATGGGCAGCTCCACCGCCGCCGGGCGCCTCGGATCCATCTTCGGACCCGTCGTCGTGCCTCTGGTCATCGCCGCCCAGGGCCCCAGCGTTGTGTTCGCCGCCAGCGCCGTGCTCTTCGTGACCGGATCGGTCGTGGCCATCCTGTTCCTCCCCGAAACCCGCCAAACCGTCCTGGAAGACATCTCCAGCTGA > 998 SACE_4063 NA major_facilitator_transporter YP_001106259.1 11 MSSDQTPESGRTADVRTVLVSSVIGTTVEWYDFFLYSTAAGLVFDELFFPSDDPYIGTMLAFVTFFVGFVARPLGGVLFGHIGDRIGRKRTLVSTMVLMGLATAAMGLLPTYQQVGMLAPALLVLLRLLQGLAIGGEWAGAVLMAVEYAPPGRRARYGAWPQVGLALGLGLGTGLFALLGNSLDEQQFLDYGWRIAFGLSIVLVFVGLAIRLRVSETPAFRRMRALEGAARVPILELFREPVRRRNTLLGLLSRWAEGAAFNTWAVFFISYSTSTLGMARNDVLVAIMAASITLAVLIPVFGAVADRWTPRRTYALGAAVYGVLVYPAFLAFQSRDPLLAGLVVVLLLGVVHAVIYAPQGTFYAQLTPVRLRYTGMSFVYQFSGIYASGLTPLIVTALLAAGGGSPWLACGYLLLTGVIGAVAALAIRERDLFATAETAPDATSRESVHA high_GC_Gram+ Saccharopolyspora_erythraea_NRRL_2338 Saccharopolyspora_erythraea_NRRL_2338 NC_009142 4467766..4469118 Oliynyk,M.,_Samborskyy,M.,_Lester,J.B.,_Mironenko,T.,_Scott,N.,_Dickens,S.,_Haydock,S.F._and_Leadlay,P.F. NA 0:1353 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM420293.Project:_18489.COMPLETENESS:_full_length. NA 26-JAN-2012 Saccharopolyspora_erythraea_NRRL_2338_chromosome,_complete_genome. NA Pseudonocardiaceae_Embley_et_al._1989_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharopolyspora_erythraea_A4FH09_SACEN.gb Saccharopolyspora_Lacey_and_Goodfellow_1975_(Approved_Lists_1980)_emend._Korn-Wendisch_et_al._1989 134096620 Nat._Biotechnol._25_(4),_447-453_(2007) NA NC_009142 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 17369815 1353 NA genomic_DNA NA NRRL_2338 NA Streptomyces_erythraeus_(Waksman_1923)_Waksman_and_Henrici_1948_(Approved_Lists_1980) NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Pseudonocardineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 405948 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Pseudonocardineae,_Pseudonocardiaceae,_Saccharopolyspora Complete_genome_sequence_of_the_erythromycin-producing_bacterium_Saccharopolyspora_erythraea_NRRL23338 NA NC_009142.1 GTGTCCTCCGATCAGACCCCCGAATCCGGGCGGACGGCCGATGTCCGCACCGTCCTGGTCTCCAGCGTCATCGGCACCACCGTCGAGTGGTACGACTTCTTCCTCTACAGCACGGCCGCCGGACTGGTTTTCGACGAGTTGTTCTTCCCCAGCGACGACCCCTACATCGGGACGATGCTGGCGTTCGTCACCTTCTTCGTCGGCTTCGTCGCCCGCCCGCTGGGCGGGGTCCTCTTCGGACACATCGGCGACCGCATCGGGCGCAAGCGGACCCTGGTGTCCACAATGGTCCTGATGGGTCTGGCCACCGCGGCGATGGGCCTGCTGCCCACCTACCAGCAGGTGGGCATGCTCGCGCCGGCCCTGCTGGTGCTCCTGCGGCTGCTGCAGGGGCTGGCCATCGGCGGTGAGTGGGCCGGCGCGGTGCTGATGGCCGTCGAGTACGCACCGCCCGGACGGCGCGCCCGCTACGGCGCCTGGCCGCAGGTCGGGCTGGCGCTGGGGCTGGGCCTGGGCACCGGGCTGTTCGCGCTGCTGGGCAACTCGCTCGACGAGCAGCAGTTCCTGGACTACGGCTGGCGGATCGCCTTCGGGCTCAGCATCGTGCTGGTCTTCGTCGGCCTGGCCATCAGGCTGCGGGTGTCGGAAACCCCGGCGTTCCGGCGGATGCGCGCGCTGGAGGGCGCCGCCCGCGTGCCCATCCTCGAGCTCTTCCGGGAACCGGTGCGCCGGCGCAACACGCTGCTGGGCCTGCTGTCGCGGTGGGCCGAAGGCGCGGCGTTCAACACCTGGGCGGTCTTCTTCATCTCCTACTCGACCTCGACGCTGGGCATGGCGCGCAACGACGTCCTGGTCGCCATCATGGCGGCCTCGATCACGCTGGCCGTGCTGATCCCCGTTTTCGGCGCCGTGGCCGACAGGTGGACACCGCGACGCACGTACGCGCTCGGCGCCGCGGTCTACGGCGTGTTGGTGTACCCGGCGTTCCTCGCCTTCCAAAGCCGCGACCCGCTGCTGGCGGGCTTGGTCGTGGTGCTCCTGCTCGGCGTGGTGCACGCCGTCATCTACGCGCCGCAGGGCACCTTCTACGCGCAGCTCACGCCCGTCCGCCTCCGCTACACGGGGATGTCCTTCGTGTACCAGTTCTCCGGCATCTACGCGTCGGGGCTCACGCCGCTGATCGTCACCGCACTGCTGGCGGCCGGCGGCGGCTCGCCCTGGCTTGCGTGCGGCTACCTGCTGCTCACCGGCGTGATCGGTGCCGTGGCGGCGCTGGCGATCCGCGAACGCGACCTCTTCGCCACCGCCGAGACGGCACCGGACGCCACGTCCCGCGAGTCCGTGCACGCCTGA > 999 SACE_6684 NA major_facilitator_transporter YP_001108775.1 11 MSTGSANVPTRSATSRVVGASLVGTTVEWYDFFLYGSAAALVFNKLFFPAGDPLIGTMLAFITYAVGFVARPLGGLVFGHYGDRLGRKKLLVLSLVLMGGATFLIGLLPTFQTIGLAAPLLLTLLRLIQGFAIGGEWGGAVLIVSEHGSAKHRGFWASWPQAGVPLGNLLGTAVLAVLAAVQSDEAFLAWGWRIAFLLSGVLVLIGLWVRLAVAESPLFVEAARKAAEEGTEQHAPIMEVLSRYKREVLIAMGARFAENVVYYVLTSFVLTYVATFLELPRSVALNASLIAAIVHFLSIPLWGALSDRVGRRPVYLVGAVGTGLWAFVFFTMLDTKSFFVITFATTVGLVFHGAMYGPQAAYFAELFGTRVRYSGASIGYQLASIVAGSLAPIIATALLAAFGSSLPISIYVALCSVITIIAVVVSPETRTRDLAADHAV high_GC_Gram+ Saccharopolyspora_erythraea_NRRL_2338 Saccharopolyspora_erythraea_NRRL_2338 NC_009142 7484321..7485643 Oliynyk,M.,_Samborskyy,M.,_Lester,J.B.,_Mironenko,T.,_Scott,N.,_Dickens,S.,_Haydock,S.F._and_Leadlay,P.F. NA 0:1323 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM420293.Project:_18489.COMPLETENESS:_full_length. NA 26-JAN-2012 Saccharopolyspora_erythraea_NRRL_2338_chromosome,_complete_genome. NA Pseudonocardiaceae_Embley_et_al._1989_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharopolyspora_erythraea_A4FP75_SACEN.gb Saccharopolyspora_Lacey_and_Goodfellow_1975_(Approved_Lists_1980)_emend._Korn-Wendisch_et_al._1989 134096620 Nat._Biotechnol._25_(4),_447-453_(2007) NA NC_009142 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 17369815 1323 NA genomic_DNA NA NRRL_2338 NA Streptomyces_erythraeus_(Waksman_1923)_Waksman_and_Henrici_1948_(Approved_Lists_1980) NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Pseudonocardineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 405948 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Pseudonocardineae,_Pseudonocardiaceae,_Saccharopolyspora Complete_genome_sequence_of_the_erythromycin-producing_bacterium_Saccharopolyspora_erythraea_NRRL23338 NA NC_009142.1 CTACACGGCGTGGTCCGCCGCGAGATCGCGCGTCCGCGTCTCCGGCGACACGACCACCGCGATGATGGTGATCACCGAGCACAGGGCCACGTAGATCGAGATCGGCAGCGACGAGCCGAAGGCCGCGAGCAGCGCGGTTGCGATGATCGGCGCCAGCGAGCCGGCCACGATGGAGGCGAGCTGGTAGCCGATGGAGGCGCCCGAGTAGCGCACCCGGGTGCCGAACAGCTCGGCGAAGTAGGCCGCCTGCGGCCCGTACATCGCGCCGTGGAACACCAGCCCCACCGTGGTGGCGAAGGTGATCACGAAGAACGACTTGGTGTCGAGCATCGTGAAGAACACGAACGCCCACAGGCCGGTGCCGACCGCGCCGACCAGGTACACCGGTCGACGGCCGACCCGGTCCGAAAGCGCTCCCCACAGCGGGATGCTGAGGAAGTGCACGATCGCCGCTATCAGCGACGCGTTGAGCGCGACAGAGCGCGGTAGCTCGAGGAACGTCGCCACGTAGGTCAGCACGAAGGACGTCAGCACGTAGTAGACGACGTTCTCGGCGAACCGGGCACCCATGGCGATGAGCACCTCGCGCTTGTACCTGCTCAGGACCTCCATGATCGGCGCGTGCTGCTCGGTGCCCTCCTCCGCGGCCTTGCGGGCGGCCTCCACGAACAGCGGCGACTCGGCCACCGCCAGCCGCACCCACAGCCCGATCAGCACCAGCACACCGGAGAGCAGGAACGCGATCCGCCAGCCCCAAGCCAGGAAGGCCTCGTCGGACTGCACCGCGGCCAGCACGGCCAGCACCGCCGTGCCGAGCAGGTTGCCCAGCGGCACCCCGGCCTGCGGCCACGAAGCCCAGAAGCCCCGGTGCTTCGCCGACCCGTGCTCGGAGACGATGAGCACCGCACCGCCCCACTCGCCGCCGATGGCGAAGCCCTGGATGAGCCGCAGGAGCGTCAGCAGCAGCGGAGCGGCCAGCCCGATGGTCTGGAACGTCGGCAGCAGACCGATCAGGAACGTGGCCCCACCCATCAGGACCAGGCTCAGGACCAGCAGCTTCTTGCGTCCGAGCCGGTCGCCGTAGTGGCCGAACACCAGCCCGCCCAGCGGGCGGGCGACGAACCCGACGGCGTAGGTGATGAAGGCCAGCATCGTGCCGATCAGCGGATCGCCAGCCGGGAAGAACAGCTTGTTGAACACCAACGCGGCGGCGGAGCCGTAGAGGAAGAAGTCGTACCACTCCACCGTCGTGCCGACGAGGCTCGCGCCGACGACCCGCGACGTGGCGGAACGGGTGGGGACGTTCGCGGAACCGGTGCTCAT > 1000 SACE_7223 NA major_facilitator_superfamily_sugar_transporter YP_001109306.1 11 MSVSQSRAPGASTEHLGHVVMIAGAAALGGFLFGYDTSVINGGVDAIQAHFNVGSAMTGLTVSSALLGSAVGAGIAGGLADRIGRIRVMQLAAILFIVSAVGSAVPFAIWDLAVWRVIGGVAIGIASVIAPAYIAEVAPAAYRGRLASLQQLAIVLGIALSQLVNYGLAAAAGGSASGMLGPLQAWQWMLGVAAIPAVIYLVVASAIPESPRYLVAAGKLDRARAVLAKIESGDPDAKIAEISDALGGEQKPKLSDLRGKFGVLPIVWVGMAIAALQQFVGINVIFYYSSSLWQSVGIDESSSLLLSLFTSIVNIIGTLIAIALVDRIGRKPLLVIGSLGMAVSLAVTGWAFSFAEVVGEDAHLPAQWGVVALVSASAFVLFFAGSWGVVMWVLLGEMFPARVRAAALAVGTATNWVANWLVTVSFPSLRDWNLPATYFMYALFALISLVFVLRYLKETNGRSLEEMGR high_GC_Gram+ Saccharopolyspora_erythraea_NRRL_2338 Saccharopolyspora_erythraea_NRRL_2338 NC_009142 8029034..8030443 Oliynyk,M.,_Samborskyy,M.,_Lester,J.B.,_Mironenko,T.,_Scott,N.,_Dickens,S.,_Haydock,S.F._and_Leadlay,P.F. NA 0:1410 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM420293.Project:_18489.COMPLETENESS:_full_length. NA 26-JAN-2012 Saccharopolyspora_erythraea_NRRL_2338_chromosome,_complete_genome. NA Pseudonocardiaceae_Embley_et_al._1989_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Saccharopolyspora_erythraea_A4FQQ6_SACEN.gb Saccharopolyspora_Lacey_and_Goodfellow_1975_(Approved_Lists_1980)_emend._Korn-Wendisch_et_al._1989 134096620 Nat._Biotechnol._25_(4),_447-453_(2007) NA NC_009142 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 17369815 1410 NA genomic_DNA NA NRRL_2338 NA Streptomyces_erythraeus_(Waksman_1923)_Waksman_and_Henrici_1948_(Approved_Lists_1980) NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Pseudonocardineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 405948 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Pseudonocardineae,_Pseudonocardiaceae,_Saccharopolyspora Complete_genome_sequence_of_the_erythromycin-producing_bacterium_Saccharopolyspora_erythraea_NRRL23338 NA NC_009142.1 TCAGCGGCCCATCTCCTCGAGGGACCGGCCGTTGGTCTCCTTGAGGTAGCGGAGCACGAACACCAGCGAGATCAGCGCGAACAGCGCGTACATGAAGTACGTCGCGGGCAGGTTCCAGTCGCGCAGGCTCGGGAAGCTGACGGTGACCAGCCAGTTCGCCACCCAGTTCGTGGCGGTGCCGACCGCCAGCGCGGCGGCGCGGACGCGGGCCGGGAACATCTCGCCCAGCAGCACCCACATCACCACGCCCCACGAGCCGGCGAAGAACAGGACGAACGCCGAAGCGGAGACCAGGGCGACAACGCCCCACTGGGCGGGCAGGTGCGCGTCCTCGCCGACGACCTCGGCGAAGCTGAAGGCCCAGCCGGTCACGGCCAGCGAGACCGCCATGCCCAGCGAGCCGATGACCAGCAGCGGCTTGCGGCCGATGCGGTCGACCAGGGCGATGGCGATGAGCGTGCCGATGATGTTCACGATCGAGGTGAACAGGCTCAGCAGCAGCGAGCTGCTCTCGTCGATGCCGACCGACTGCCACAGCGACGACGAGTAGTAGAAGATCACGTTGATGCCGACGAACTGCTGCAACGCGGCGATCGCCATCCCGACCCAGACGATCGGCAGCACGCCGAACTTGCCGCGCAGGTCGCTCAGCTTCGGCTTCTGCTCACCGCCGAGCGCGTCGCTGATCTCGGCGATCTTGGCGTCGGGGTCGCCGCTCTCGATCTTGGCGAGGACCGCACGTGCGCGGTCCAGCTTGCCCGCGGCGACCAGGTAGCGCGGCGACTCGGGGATCGCCGAGGCGACGACCAGGTAGATCACCGCCGGGATCGCGGCGACGCCGAGCATCCACTGCCAGGCCTGCAACGGTCCGAGCATGCCGGAGGCGCTACCGCCCGCGGCAGCGGCGAGCCCGTAGTTGACCAGCTGCGACAGGGCGATGCCCAGGACGATCGCGAGCTGCTGGAGCGAGGCCAGCCGTCCCCGGTACGCGGCGGGTGCGACCTCGGCGATGTAGGCGGGGGCGATCACGGAGGCGATGCCGATCGCCACGCCGCCGATGACGCGCCACACGGCGAGGTCCCAGATCGCGAAGGGGACCGCCGAACCGACGGCGCTGACGATGAACAGGATCGCGGCGAGCTGCATGACCCGGATCCGGCCGATCCGGTCGGCCAGGCCGCCGGCGATCCCCGCCCCGACGGCGGAGCCCAGCAGCGCCGACGAGACGGTGAGTCCGGTCATCGCGGACCCGACGTTGAAGTGCGCCTGAATGGCGTCGACGCCTCCGTTGATGACGGAGGTGTCGTAGCCGAAGAGGAAGCCGCCCAGGGCGGCCGCTCCGGCGATCATCACCACGTGGCCCAGGTGTTCGGTCGAAGCGCCAGGGGCTCGCGACTGCGATACCGACAT > 1001 SRU_2846 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 sugar_transporter_subfamily_protein YP_446936.1 11 MPFQRRLSPNTRPPLALFVAVDSVMPDPTADSSSEANEEVLTGNVLKIVLLSLSAALGGFLFGFDSGVINGTVEAIQSDFGAGEVVTGFNVASMLLGSAVGAFFAGNLADKVGRRPTLILTALAFMVSAWGSGAAGGSVPFVAARLIGGLAVGAASILAPAYISEIAPSSIRGSLATLQQLMIVVGLFVAFLNNYLIAQAAGSAANAFWMGFDAWQWMYWMELIPASVFFLSLLAIPESPRYLVAANREEEAASVLDSLGTATNVKEKLADIRSTLNDERRPRLTDVIQEHTGRIHPLLWAGIGLAALQQLTGINVVFYYGGTLWQAAGFTEASALLTNVVNGSVNVVFTFVAIALIDRVGRRPLLLVGSIGQALMLGVMAYVFATAAQGGAGGIEMQGNQGVVALVAANAYIAFFAFSWGPVMWVMLGEMFPNRFRGAALSICGLVQWLSNFLVTWTFPILLGSIGLGISYGIYAAFGVVAFVFVKLFIDETKGRSLEDMSREADAAA NA Salinibacter_ruber_DSM_13855 Salinibacter_ruber_DSM_13855 NC_007677 3521487..3523016 Mongodin,E.F.,_Nelson,K.E.,_Daugherty,S.,_Deboy,R.T.,_Wister,J.,_Khouri,H.,_Weidman,J.,_Walsh,D.A.,_Papke,R.T.,_Sanchez_Perez,G.,_Sharma,A.K.,_Nesbo,C.L.,_MacLeod,D.,_Bapteste,E.,_Doolittle,W.F.,_Charlebois,R.L.,_Legault,B._and_Rodriguez-Valera,F. NA 0:1530 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000159.COMPLETENESS:_full_length. NA 23-JAN-2012 Salinibacter_ruber_DSM_13855_chromosome,_complete_genome. NA Rhodothermaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salinibacter_ruber_Q2RYP5_SALRD.gb Salinibacter_Anton_et_al._2002 83814055 Proc._Natl._Acad._Sci._U.S.A._102_(50),_18147-18152_(2005) NA NC_007677 NA NA Bacteroidetes_Order_II._Incertae_sedis Cytophaga-Flexibacter-Bacteroides_phylum 16330755 1530 NA genomic_DNA NA DSM_13855;_M31 NA Salinibacter_ruber_Anton_et_al._2002 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 309807 Bacteria,_Bacteroidetes,_Bacteroidetes_Order_II._Incertae_sedis,_Rhodothermaceae,_Salinibacter The_genome_of_Salinibacter_ruber:_convergence_and_gene_exchange_among_hyperhalophilic_bacteria_and_archaea NA NC_007677.1 GTGCCGTTCCAGCGTCGGCTCTCCCCAAATACCCGTCCGCCCCTCGCTCTTTTCGTTGCAGTCGATTCCGTCATGCCCGACCCCACTGCCGACTCCTCTTCTGAGGCCAATGAGGAAGTACTCACCGGAAACGTCCTCAAAATCGTCCTCTTGTCCCTGTCCGCTGCGCTCGGCGGGTTCCTGTTCGGGTTCGACAGCGGAGTCATCAACGGGACGGTGGAGGCGATCCAGAGTGATTTTGGAGCTGGGGAGGTCGTCACGGGCTTTAACGTGGCGTCGATGCTATTGGGGAGCGCGGTGGGCGCCTTCTTCGCGGGCAACTTGGCTGACAAGGTCGGCCGGCGGCCCACGCTCATCCTCACGGCCCTCGCCTTTATGGTGAGCGCCTGGGGCTCCGGGGCCGCAGGGGGATCGGTGCCCTTCGTGGCCGCCCGCCTGATCGGCGGGCTAGCAGTGGGAGCAGCGAGCATTCTCGCCCCCGCCTACATCAGCGAAATTGCTCCGTCCAGCATTCGGGGCAGCCTAGCCACGCTCCAACAGCTCATGATCGTGGTGGGGCTTTTCGTGGCCTTTCTCAACAACTACCTGATCGCGCAGGCTGCCGGAAGCGCCGCCAACGCGTTCTGGATGGGCTTCGACGCGTGGCAATGGATGTACTGGATGGAGCTAATTCCCGCCAGCGTATTTTTTCTTTCCCTCCTCGCGATTCCGGAGTCTCCCCGCTACCTGGTGGCCGCGAACCGGGAGGAAGAGGCCGCCTCCGTGCTCGACAGCCTGGGCACGGCCACCAACGTGAAGGAGAAGCTCGCCGACATTCGGTCGACCTTGAACGACGAGCGGCGCCCGCGCCTCACGGACGTGATTCAGGAGCACACCGGTCGGATTCACCCCCTGCTGTGGGCCGGCATTGGGCTGGCGGCCCTGCAGCAGTTGACCGGAATCAACGTAGTGTTTTACTACGGGGGGACGCTCTGGCAGGCCGCCGGCTTTACCGAGGCAAGCGCTCTGCTGACGAACGTCGTCAACGGCTCGGTAAACGTCGTCTTTACCTTCGTGGCGATTGCCCTGATCGACCGGGTGGGGCGTCGGCCCCTTCTGCTCGTGGGCTCGATCGGGCAGGCCCTCATGCTCGGCGTCATGGCGTACGTCTTCGCCACGGCGGCGCAGGGCGGGGCTGGCGGCATCGAAATGCAGGGGAATCAAGGGGTCGTAGCACTGGTGGCCGCGAACGCATACATTGCGTTTTTCGCCTTCTCCTGGGGCCCGGTCATGTGGGTTATGCTCGGCGAGATGTTTCCGAACCGGTTCCGCGGCGCCGCCCTCTCGATCTGCGGCCTGGTGCAGTGGCTCTCCAACTTTCTGGTCACGTGGACCTTTCCCATTCTTTTGGGGTCCATCGGGCTTGGCATCTCGTACGGCATCTACGCGGCGTTCGGAGTCGTGGCCTTCGTCTTCGTGAAGCTGTTCATCGACGAGACAAAGGGCCGCTCGCTGGAGGACATGTCTCGGGAGGCCGATGCGGCCGCGTAG > 1002 SeAg_B4699 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 sugar_transporter YP_002149334.1 11 MSTSDSCYNTGYILRICAIAALGGILFGYDTAVISGAIGSLTSYFHLSPAETGWAVSCVVVGCVIGSFSAGYLSKRFGRKKSLMVSALLFTISAVGTSLSYTFTHFVIYRIIGGLAVGLAATVSPMYMSEVSPKNMRGRALSMQQFAIVFGQILIFYVNYKIASIAADTWLIELGWRYMFAAGIIPCILFCILVFLIPESPRWMMMIGREEETLKILTKISNEEHARHLLADIKTSLQNDQLNAHQKLNYRDGNVRFILILGCMIAMLQQVTGVNVMMYYAPIVLKDVTGSAQEALFQTIWIGVIQLIGSIIGAMIMDKMGRLSLMRKGTIGSIIGLLLTSWALYSQATGYFALFGMLFFMIFYALSWGVGAWVLISEIFPNRMRSQGMSISVGFMWMANFLVSQFFPMINENPYLLSHFHGAFPMWIFAICCIFSYFFICRYLPETKGISLEKMESVVLAKRRKKLQPIQTERYSD gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 NC_011149 4591757..4593190 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1434 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001138.The_sequenced_strain_has_been_deposited_at_the_Salmonella_GeneticStock_Center_at_the_University_of_Calgary_under_the_care_of_Dr.K.E._Sanderson.COMPLETENESS:_full_length. NA 27-JAN-2012 Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_agona_B5F3E6_SALA4.gb Samonella 197247352 J._Bacteriol._193_(14),_3556-3568_(2011) NA NC_011149 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1434 NA genomic_DNA NA SL483 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 454166 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Agona Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA NC_011149.1 TTAATCAGAATAACGTTCGGTTTGAATTGGCTGCAGTTTTTTTCTGCGTTTTGCTAACACTACGCTCTCCATTTTCTCCAGCGAAATGCCTTTTGTTTCCGGCAGGTAACGGCAGATAAAGAAGTAACTGAAGATGCAGCAGATGGCGAATATCCACATTGGAAATGCGCCGTGGAAATGCGAAAGTAAATACGGGTTTTCATTAATCATCGGGAAGAATTGCGAAACTAAAAAGTTTGCCATCCACATAAATCCAACCGAAATACTCATTCCCTGCGACCTCATCCGGTTAGGGAATATTTCAGAAATAAGCACCCATGCGCCCACGCCCCAGGAAAGCGCGTAGAAAATCATAAAGAACAGCATACCGAATAGCGCGAAATAACCGGTTGCCTGGCTGTACAGCGCCCATGAGGTGAGCAACAAGCCGATGATGCTGCCAATAGTGCCTTTACGCATCAGCGACAAACGCCCCATCTTATCCATAATCATTGCGCCAATAATGGAACCGATAAGCTGAATCACGCCGATCCAGATTGTCTGGAACAGGGCCTCCTGGGCGCTACCGGTCACATCCTTAAGGACGATTGGCGCGTAATACATCATGACGTTAACCCCTGTTACCTGTTGCAGCATAGCGATCATGCAGCCCAGAATCAGGATGAAACGCACGTTCCCGTCGCGGTAATTGAGTTTTTGATGGGCGTTTAGTTGGTCATTTTGCAGTGAGGTTTTTATATCGGCAAGAAGATGTCTGGCATGTTCTTCGTTGGATATTTTGGTCAGTATTTTTAGCGTCTCCTCCTCGCGACCAATCATCATCATCCAGCGGGGAGATTCCGGGATTAAAAAGACTAAAATACAGAACAAAATGCAGGGAATAATACCCGCAGCAAACATATAGCGCCAGCCAAGTTCAATGAGCCAGGTATCCGCTGCAATCGATGCTATTTTGTAGTTAACGTAGAAGATCAGAATCTGACCGAAAACGATAGCGAACTGCTGCATACTTAATGCTCTGCCGCGCATGTTTTTCGGTGAGACTTCAGACATATACATCGGTGATACTGTTGCCGCCAGGCCGACTGCCAGTCCACCGATAATGCGATAAATCACAAAATGGGTGAACGTGTAGGAGAGGGAGGTGCCCACTGCGGAAATAGTGAATAACAGCGCTGAAACCATCAATGATTTCTTGCGTCCAAAACGTTTAGATAAATATCCGGCGCTAAACGAACCAATAACGCACCCCACCACAACGCAGGAAACCGCCCAGCCGGTCTCAGCAGGAGATAGATGAAAGTAGCTGGTCAGTGAACCAATTGCACCTGAAATAACAGCAGTATCGTAGCCAAATAATATTCCGCCCAGTGCGGCAATCGCGCAGATGCGTAATATGTAACCCGTATTATAACAACTATCTGATGTGGACAT > 1003 SARI_03455 xylose/proton_symporter;_member_of_the_major_facilitator_superfamily_(MFS)_of_transporter D-xylose_transporter_XylE YP_001572426.1 11 MNTQYNSRYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQQLSESAANSLLGFCVASALIGCIIGGAIGGYCSNRFGRRDSLKIAALLFFISGVGSAWPELGFTTINPDNAVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAKSGDATWLNSNGWRYMFASECIPALLFLLLLYTVPESPRWLMARGRNDQAENILRKIMGTSLAALAVQEINLSLQHGRKTGGRLLMFGAGVIAIGVMLSVFQQFVGINVVLYYAPEVFKTLGASTDVALLQTIIVGVINLSFTVLAIMTVDKFGRKPLQIIGALGMALGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLAEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGVMGVLAAVFMWKFVPETKGKTLEELEELWTPAEEKAPKAAIQ gamma_subgroup Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 NC_010067 3384351..3385826 NA NA 0:1476 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000880.Salmonella_enterica_subspecies_IIIa_(Arizonae)_serovar62:z4,z23:--Most_bacteria_in_the_species_S._enterica_belong_to_oneof_seven_subspecies;_all_but_subspecies_I_normally_grow_only_incold-blooded_animals._Subspecies_IIIa_(S._Arizonae)_is_naturallyfound_in_reptiles,_but_also_causes_outbreaks_of_salmonellosis_inturkeys_and_sheep_and_can_occasionally_produce_both_gastroenteritisand_serious_disseminated_disease_in_humans._Many_human_infectionscan_be_traced_to_contact_with_reptiles_or_ingestion_of_variousreptile_products,_particularly_from_rattlesnakes._Fewer_than_tencases_in_humans_are_typically_reported_in_the_US_each_year.The_strain_of_S._Arizonae_(62:z4,z23:-)_being_sequenced_isCDC346-86;_it_was_named_RSK2980_by_R.K._Selander_and_is_strainSARC5_of_the_Salmonella_Reference_C_set._This_serovar_is_ofinterest_because_of_its_taxonomic_position._It_appears_to_be_themost_divergent_subspecies_among_the_S._enterica._It_can_be_obtainedfrom_the_American_Type_Culture_Collection_as_ATCC_BAA-731,_or_theSalmonella_Genetic_Stock_Centre_as_SGSC4693._The_genome_wassequenced_to_8X_coverage,_using_plasmid_and_fosmid_libraries_andwas_finished_to_an_error_rate_of_less_than_1_per_10,000_bases.Automated_annotation_was_performed_and_manual_annotation_willcontinue_in_the_labs_of_Michael_McClelland_and_Kenneth_Sanderson.The_National_Institute_of_Allergy_and_Infectious_Diseases_(NIAID),National_Institutes_of_Health_(NIH)_has_funded_this_project.Coding_sequences_below_are_predicted_using_GeneMark_v3.3_andGlimmer2_v2.13.Intergenic_regions_not_spanned_by_GeneMark_andGlimmer2_were_blasted_against_NCBIs_non-redundant_(NR)_databaseand_predictions_generated_based_on_protein_alignments._RNA_geneswere_determined_using_tRNAscan-SE_1.23_or_Rfam_v8.0._This_sequencewas_finished_as_follows_unless_otherwise_noted:_all_regions_weredouble_stranded,_sequenced_with_an_alternate_chemistries_or_coveredby_high_quality_data(i.e.,_phred_quality_>=30);an_attempt_was_madeto_resolve_all_sequencing_problems,_such_as_compressions_andrepeats;_all_regions_were_covered_by_sequence_from_more_than_onem13_subclone.COMPLETENESS:_full_length. NA 29-JUL-2011 Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_arizonae_A9MHA1_SALAR.gb Samonella 161501984 Submitted_(03-DEC-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_010067 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1476 NA genomic_DNA NA RSK2980 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._arizonae_(Borman_1957)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 882884 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:-- Direct_Submission NA NC_010067.1 ATGAATACCCAATATAATTCCCGCTATATTTTTTCGATTACCTTAGTCGCAACATTAGGAGGGTTATTATTCGGCTATGATACCGCTGTTATTTCCGGTACCGTCGAGTCATTAAACACTGTTTTTGTCGCTCCGCAGCAGTTAAGTGAATCCGCCGCCAACTCGCTGTTAGGCTTTTGTGTTGCCAGCGCACTGATTGGCTGTATCATCGGCGGCGCGATTGGCGGCTACTGTAGTAACCGTTTTGGTCGTCGAGATTCTTTAAAAATCGCTGCCCTGTTGTTTTTTATTTCCGGCGTAGGTTCTGCCTGGCCGGAATTAGGGTTTACCACCATTAATCCCGACAACGCCGTACCGGTTTATTTAGCTGGATACGTCCCGGAATTTGTCATTTATCGCATTATTGGTGGGATTGGCGTCGGCTTAGCCTCAATGCTGTCACCGATGTATATTGCCGAACTGGCCCCTGCCCATATTCGTGGCAAACTGGTCTCATTTAACCAGTTCGCCATTATTTTTGGACAACTACTGGTTTACTGCGTGAACTATTTTATTGCCAAATCCGGCGACGCCACTTGGCTGAATTCAAATGGCTGGCGATATATGTTTGCCTCTGAATGTATTCCGGCGCTGCTCTTTTTACTGCTGCTGTATACCGTACCGGAAAGCCCGCGCTGGCTGATGGCGCGCGGCAGAAATGACCAGGCGGAAAATATTCTGCGCAAAATTATGGGGACATCGCTGGCCGCGCTGGCGGTGCAGGAGATTAACCTGTCGCTGCAACATGGTCGCAAAACGGGCGGACGCCTGCTGATGTTTGGCGCAGGTGTGATTGCGATTGGCGTCATGCTGTCCGTCTTTCAGCAATTTGTTGGGATTAACGTGGTACTGTATTACGCGCCGGAGGTCTTTAAAACTCTGGGTGCCAGTACCGATGTCGCGCTGCTACAAACAATCATTGTCGGCGTTATTAACCTGAGCTTTACCGTTCTGGCCATCATGACGGTAGATAAATTTGGCCGCAAGCCGCTGCAAATTATCGGCGCGTTGGGGATGGCTTTAGGGATGTTTAGCCTCGGCACCGCCTTTTACACTCAGGCGCCGGGCATCGTGGCGCTGCTATCGATGCTGTTCTACGTCGCCGCATTCGCTATGTCCTGGGGACCGGTCTGCTGGGTATTGCTGGCAGAAATCTTCCCCAATGCCATTCGCGGCAAAGCGCTCGCCATTGCTGTCGCCGCGCAGTGGTTGGCGAACTACTTCGTCTCCTGGACCTTCCCAATGATGGATAAAAACTCGTGGCTGGTCGCTCATTTCCACAACGGTTTTTCCTACTGGATCTACGGTGTGATGGGCGTTCTGGCGGCGGTATTCATGTGGAAGTTTGTACCGGAGACCAAAGGCAAAACGCTGGAAGAACTTGAGGAATTATGGACGCCAGCAGAAGAGAAAGCGCCGAAAGCCGCCATACAATAA > 1004 SARI_02921 KEGG:_cal:orf19.4384_4.7e-15_HXT10;_fructose_symporter_K01804;_COG:_COG0477_Permeases_of_the_major_facilitator_superfamily;_Psort_location:_plasma_membrane,_score:_23 hypothetical_protein YP_001571909.1 11 MPQPRNFDDLKFSSIHRRIMLWGSGGPFLDGYVLVIIGVALEQLTPLLHLDAEWIGALGAATLAGLFIGTSLFGYICDKVGRRKMFLLDIIAIGALSVATMFVSTPLELLVMRVLIGIVIGADYPIATSMITEFSNTRQRAFSIGFIAAMWYVGATCANLVGYWLYDIESGWRWMLGSAFIPCLIILIGRFDLPESPRWLLRKGRVKECEQMMIKLFGEPVCFDDEPPQETRFLQLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGWEQGRSAALGNVVISLFFMLGCIPAMFWLNSIGRRPLLIGSFAMMTIALALLGLVSNLGIILVVVAFAVYAFFSGGPGILQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFITRYGINNVMLIGALISLVGLGVSVMFAPETRGLTLTQTGNMTLRGTPSDNPH gamma_subgroup Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 NC_010067 2847745..2849085 NA NA 0:1341 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000880.Salmonella_enterica_subspecies_IIIa_(Arizonae)_serovar62:z4,z23:--Most_bacteria_in_the_species_S._enterica_belong_to_oneof_seven_subspecies;_all_but_subspecies_I_normally_grow_only_incold-blooded_animals._Subspecies_IIIa_(S._Arizonae)_is_naturallyfound_in_reptiles,_but_also_causes_outbreaks_of_salmonellosis_inturkeys_and_sheep_and_can_occasionally_produce_both_gastroenteritisand_serious_disseminated_disease_in_humans._Many_human_infectionscan_be_traced_to_contact_with_reptiles_or_ingestion_of_variousreptile_products,_particularly_from_rattlesnakes._Fewer_than_tencases_in_humans_are_typically_reported_in_the_US_each_year.The_strain_of_S._Arizonae_(62:z4,z23:-)_being_sequenced_isCDC346-86;_it_was_named_RSK2980_by_R.K._Selander_and_is_strainSARC5_of_the_Salmonella_Reference_C_set._This_serovar_is_ofinterest_because_of_its_taxonomic_position._It_appears_to_be_themost_divergent_subspecies_among_the_S._enterica._It_can_be_obtainedfrom_the_American_Type_Culture_Collection_as_ATCC_BAA-731,_or_theSalmonella_Genetic_Stock_Centre_as_SGSC4693._The_genome_wassequenced_to_8X_coverage,_using_plasmid_and_fosmid_libraries_andwas_finished_to_an_error_rate_of_less_than_1_per_10,000_bases.Automated_annotation_was_performed_and_manual_annotation_willcontinue_in_the_labs_of_Michael_McClelland_and_Kenneth_Sanderson.The_National_Institute_of_Allergy_and_Infectious_Diseases_(NIAID),National_Institutes_of_Health_(NIH)_has_funded_this_project.Coding_sequences_below_are_predicted_using_GeneMark_v3.3_andGlimmer2_v2.13.Intergenic_regions_not_spanned_by_GeneMark_andGlimmer2_were_blasted_against_NCBIs_non-redundant_(NR)_databaseand_predictions_generated_based_on_protein_alignments._RNA_geneswere_determined_using_tRNAscan-SE_1.23_or_Rfam_v8.0._This_sequencewas_finished_as_follows_unless_otherwise_noted:_all_regions_weredouble_stranded,_sequenced_with_an_alternate_chemistries_or_coveredby_high_quality_data(i.e.,_phred_quality_>=30);an_attempt_was_madeto_resolve_all_sequencing_problems,_such_as_compressions_andrepeats;_all_regions_were_covered_by_sequence_from_more_than_onem13_subclone.COMPLETENESS:_full_length. NA 29-JUL-2011 Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_arizonae_A9MQG9_SALAR.gb Samonella 161501984 Submitted_(03-DEC-2007)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_010067 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1341 NA genomic_DNA NA RSK2980 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._arizonae_(Borman_1957)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 882884 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:-- Direct_Submission NA NC_010067.1 TTAATGAGGGTTATCCGATGGCGTTCCGCGCAATGTCATGTTTCCGGTCTGTGTTAGCGTCAAGCCGCGGGTTTCCGGAGCAAACATCACCGATACGCCAAGCCCGACTAACGAAATCAACGCGCCAATCAGCATGACATTATTAATACCGTAACGAGTAATAAAAATCGGTAATGCCCAGGTGGAGACAATGGTTCCGATGCGGCTTAATGACATGATGACCCCCACGGCCGAAGCGCGAATGTCCGTAGGGAAGAGTTCATTAGGATAAAGCCATTGCAGTATGCCCGGTCCGCCGGAAAAGAAGGCGTACACCGCAAACGCCACCACTACCAGTATGATGCCCAGATTTGATACCAGCCCCAGCAGCGCCAGCGCGATAGTCATCATTGCGAAGCTGCCAATAAGCAGAGGGCGACGGCCAATACTGTTTAGCCAGAACATCGCCGGTATACAGCCAAGCATAAAAAAGAGGCTAATCACCACATTACCGAGCGCCGCGCTGCGCCCCTGTTCCCAGCCGAGTAACCCGACGATCTGCGGCCCAAAGGTATAGATAGCGAACATCGGGATCACCTGACAGGTCCAGATAGCCGCGACGAACAGTACAAACGGGAAATGACGGCGGTTAAACAGTTGCAGGAAGCGGGTCTCCTGCGGCGGCTCATCGTCAAAGCAGACCGGTTCGCCGAACAGTTTGATCATCATTTGTTCGCACTCTTTTACCCGTCCTTTTCGCAATAGCCAGCGTGGCGATTCCGGCAGGTCAAAGCGGCCAATCAAAATGATTAAGCACGGGATAAAGGCGCTGCCAAGCATCCAGCGCCAGCCGCTTTCTATGTCATACAGCCAGTACCCCACCAGATTGGCGCAGGTCGCGCCGACGTACCACATCGCGGCGATAAAACCGATGGAGAACGCGCGCTGGCGGGTATTGGAAAACTCCGTAATCATGGAGGTGGCGATAGGGTAATCCGCGCCGATAACAATGCCAATTAAAACGCGCATCACCAGCAATTCAAGCGGCGTGGAAACAAACATGGTCGCCACGGAGAGAGCGCCGATAGCGATAATATCAAGCAGGAACATTTTACGCCGCCCGACTTTATCGCAAATATAGCCAAACAGCGAGGTGCCGATAAACAGTCCGGCAAGCGTAGCCGCGCCGAGCGCGCCAATCCATTCAGCATCGAGATGTAATAGCGGCGTCAGTTGTTCCAGCGCCACGCCAATGATCACCAGTACGTAGCCATCAAGGAACGGACCGCCGCTTCCCCACAGCATAATTCTGCGGTGAATAGAGGAGAATTTAAGGTCGTCAAAGTTTCTGGGCTGCGGCAT > 1005 SC3031 IPR003663:_Sugar_transporter;_IPR005828:_General_substrate_transporter;_IPR005829:_Sugar_transporter_superfamily;IPR007114:_Major_facilitator_superfamily major_facilitator_superfamily_galactose:proton_symporter YP_218018.1 11 MPDNKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFITDEFQITAHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLIISRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYSGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFHDAERVLLRLRDTSAEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGILLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAIGMGILGTMMHIGIHSPSAQYFAIAMLLMFIIGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNNLGNANTFWVYAGLNVLFILLTLWLVPETKHVSLEHIERNLMKGRKLREIGAHD gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 NC_006905 3212829..3214223 Chiu,C.H.,_Tang,P.,_Chu,C.,_Hu,S.,_Bao,Q.,_Yu,J.,_Chou,Y.Y.,_Wang,H.S._and_Lee,Y.S. NA 0:1395 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE017220.COMPLETENESS:_full_length. NA 24-JAN-2012 Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_choleraesuis_Q57K25_SALCH.gb Samonella 62178570 Nucleic_Acids_Res._33_(5),_1690-1698_(2005) NA NC_006905 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 15781495 1395 NA genomic_DNA NA SC-B67 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 321314 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Choleraesuis The_genome_sequence_of_Salmonella_enterica_serovar_Choleraesuis,_a_highly_invasive_and_resistant_zoonotic_pathogen NA NC_006905.1 ATGCCTGACAATAAAAAACAAGGGCGTTCCAACAAGGCCATGACATTTTTTGTCTGCTTTCTTGCAGCCCTGGCAGGATTACTTTTTGGCCTGGATATCGGCGTTATCGCCGGTGCTTTACCCTTCATTACCGACGAGTTTCAGATTACCGCACACACTCAGGAATGGGTGGTCAGCTCCATGATGTTTGGCGCGGCCGTCGGCGCTGTCGGCAGCGGCTGGCTCTCCTTTAAGCTGGGTCGTAAAAAAAGCCTGATGATCGGCGCTATCCTGTTCGTCGCCGGTTCGCTGTTCTCCGCTGCGGCGCCTAACGTTGAAGTCCTGATTATTTCTCGCGTGCTGCTGGGTCTGGCCGTCGGCGTCGCTTCCTACACTGCACCGTTGTACCTGTCAGAGATCGCGCCGGAAAAAATTCGCGGCAGTATGATCTCAATGTACCAGCTCATGATCACCATCGGGATTCTGGGCGCTTATCTGTCCGACACCGCGTTCAGCTACAGCGGCGCATGGCGCTGGATGCTCGGCGTGATCATCATCCCAGCCATTTTGCTGCTGATCGGCGTCTTCTTCCTGCCGGACAGCCCGCGCTGGTTTGCGGCGAAACGCCGTTTCCATGATGCTGAACGCGTCCTGTTGCGCCTGCGTGACACCAGTGCGGAAGCAAAACGTGAGCTCGATGAAATTCGCGAAAGTTTGCAGGTTAAACAGAGCGGTTGGGCGCTGTTCAAAGAGAACAGCAACTTCCGCCGCGCCGTGTTTCTTGGCATTTTGTTGCAGGTCATGCAGCAATTTACCGGGATGAACGTCATCATGTATTACGCGCCGAAAATCTTCGAACTGGCGGGGTACACGAATACCACGGAGCAGATGTGGGGCACCGTTATTGTTGGTCTGACTAACGTGCTGGCAACCTTCATCGCTATCGGCCTGGTTGACCGCTGGGGCCGCAAGCCGACCCTGACGCTGGGCTTCCTGGTCATGGCGATTGGTATGGGGATTCTGGGTACGATGATGCACATAGGCATCCATTCGCCGTCTGCGCAATACTTCGCTATCGCTATGCTGCTGATGTTCATCATTGGATTTGCGATGAGCGCTGGTCCGCTGATTTGGGTACTGTGCTCCGAAATCCAGCCGCTGAAAGGCCGCGATTTCGGCATCACCTGCTCCACCGCGACCAACTGGATCGCCAATATGATCGTCGGCGCAACGTTCCTGACCATGCTGAACAATCTGGGTAACGCCAACACCTTCTGGGTCTACGCTGGCCTGAACGTGCTGTTTATCCTGCTGACCCTGTGGCTGGTGCCGGAAACCAAACACGTTTCGCTGGAACACATTGAACGTAACCTGATGAAAGGTCGTAAACTGCGCGAAATCGGCGCCCACGACTAA > 1006 SNSL317_A2292 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 alpha-ketoglutarate_permease EDX48272.1 11 MAEIIQRIDKNNAEAPEMRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADRRGRKASMLISVCMMCMGSLVIACLPGYDTIGTWAPALLLIARLFQGLSVGGEYGTSATYMSEVALEGRKGFFASFQYVTLIGGQLLALLVVVILQQVLDDAELRAWGWRIPFALGAVLAVVALWLRRQLDETSKHETRALKEAGSLKGLWRNRKAFLMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALCVFMLVQPLFGALSDKIGRRTSMLCFGALATLFTVPILSALQNVTSPYAAFALVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSVGMESSFFWYVTAMAVLAFLVSLMLHRKGKGLRL gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL317 Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL317 ABEW01000021 19864..21165 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1302 S._Newport_is_prevalent_in_many_geographic_regions._Outbreakinvestigations_and_targeted_studies_have_identified_dairy_cattle_asthe_main_reservoir_of_S._Newport._Antimicrobial_resistance_(NewportMDR-AmpC)_is_particularly_problematic_in_this_serotype,_where_theprevalence_of_Newport_MDR-AmpC_among_S._Newport_isolates_fromhumans_in_the_United_States_increased_from_0%_during_1996-1997_to26%_in_2001._MDR_strains_of_S._Newport_have_been_recorded_asresistant_to_ampicillin,_chloramphenicol,_streptomycin,sulphonamides_and_tetracycline_(ACSSuT)_and_many_of_these_strainsshow_intermediate_or_full_resistance_to_third-generationcephalosporins,_kanamycin,_potentiated_sulphonamides,_andgentamicin._Two_distinct_evolutionary_lineages_exist_in_thisserotype,_and_strain_SL317_is_a_S._Newport_isolate_in_theantibiotic_susceptible_lineage.Annotation_was_added_to_the_contigs_in_August_2008. NA 05-AUG-2008 Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL317_gcontig_1106632921398,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B4ACI0_SALNE.gb Samonella 156070854 J._Bacteriol._193_(14),_3556-3568_(2011) NA ABEW01000021 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1302 NA genomic_DNA NA SL317 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 454168 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Newport Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA ABEW01000021.1 CTAAAGGCGTAAGCCCTTTCCTTTACGGTGCAACATCAACGAAACCAGGAAAGCCAGAACGGCCATCGCGGTAACATACCAGAAGAACGAGCTCTCCATACCGACAGATTTTAGCGACAGCGCGACATATTCCGCAGAGCCGCCAAATAACGCGTTTGCTACCGCGTAAGATAAACCGACGCCCAGGGCGCGAACCTGCGCCGGAAACATCTCCGCTTTCAGGATCCCGCTAATCGAGGTATAGAAACTCACAATCAATAGCGCGCACATCACTAAAGCAAATGCGGCATAAGGCGACGTCACATTCTGCAACGCGGAGAGAATTGGAACGGTGAAAAGCGTCGCGAGTGCGCCAAAACATAGCATAGAGGTGCGCCTGCCAATCTTATCGGATAACGCGCCGAATAACGGCTGCACCAACATGAAAACACACAGCGCAGCCGTCATAATGCCGCTGGCGACATTGGCATGCATACCTGCTGTATTTACCAGATATTTCTGCATATAGGTGGTGAAGGTATAAAAGCACAGCGAGCCTGCCGCGGTGAAACCAAGCACCATCAAAAAGGCTTTGCGATTACGCCACAAACCTTTCAACGAACCGGCTTCTTTTAATGCGCGAGTCTCATGCTTCGAGGTTTCATCCAGCTGGCGACGTAGCCATAACGCCACAACCGCCAGCACGGCGCCCAGCGCAAAGGGAATACGCCATCCCCAGGCACGAAGCTCAGCATCGTCCAGAACCTGCTGCAAAATCACAACGACCAGCAATGCCAGTAGTTGGCCACCGATAAGCGTAACGTACTGAAACGACGCGAAAAATCCCTTACGACCTTCAAGCGCAACTTCACTCATATATGTCGCGCTGGTCCCATACTCTCCCCCTACCGAGAGCCCCTGAAATAACCTTGCAATAAGTAGCAGCGCCGGTGCCCAGGTGCCGATGGTATCGTAACCAGGTAAGCAGGCAATCACCAGCGACCCCATGCACATCATGCACACCGAAATCAACATTGAGGCTTTGCGCCCGCGTCGATCTGCAATGCGTCCAAACAGCCAACCACCGATAGGCCGCATTAAAAAACCGGCGGCAAAGACGCCTGCCGTTTGCAAAAGCTGAGTAGTGGTATTACCAGAAGGAAAGAAGATATGTGCAAAATAGAGCGAGCAGAAAGAGTAGACGTAGAAATCAAACCATTCCACTAAGTTTCCGGAAGAGGCCCCCACGATAGCCCATATGCGTCGCCGCATCTCCGGAGCCTCAGCGTTATTTTTATCTATACGCTGAATAATTTCTGCCAT > 1007 SeSPA_A0157 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_PF08946;_match_to_protein_family_HMM_TIGR00883 proline/betaine_transporter EDY24877.1 11 MLKRKKIKPITLGDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEENFLEWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLSCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVIMGSIALFALAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLIAGLTPTLAAWLVESSQDLMMPAYYLMVIAVIGLITGISMKETANRPLKGATPAASDIQEAKEILGEHYDNIEQKIDDIDQEIAELQVKRSRLVQQHPRIDE gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA23 Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA23 ABAM02000001 167089..168591 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1503 S._St._Paul_is_the_6th_most_common_serovar_infecting_humans_in_theUnited_States_and_has_emerged_in_other_countries_such_as_Japan.Yet,_there_is_little_genetic_data_on_this_serovar,_and_none_toexplain_its_prevalence_as_a_major_cause_of_human_illness._StrainSARA23_falls_within_the_main_clade_of_this_serovar. NA 22-AUG-2008 Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA23_gcontig_1112725669562,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5BW05_SALET.gb Samonella 197239853 J._Bacteriol._193_(14),_3556-3568_(2011) NA ABAM02000001 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1503 NA genomic_DNA NA SARA23 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 439846 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Saintpaul Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA ABAM02000001.1 ATGCTGAAAAGGAAAAAAATAAAACCGATTACACTGGGCGATGTGACCATCATTGATGATGGTAAACTTCGCAAAGCGATTACCGCCGCCTCGCTGGGCAACGCGATGGAGTGGTTTGATTTTGGTGTTTATGGATTTGTTGCCTACGCGTTGGGTAAAGTCTTTTTCCCCGGCGCCGATCCCAGCGTCCAGATGATTGCCGCGCTGGCCACGTTTTCCGTTCCCTTCCTGATTCGTCCGCTCGGCGGGTTATTCTTTGGTATGCTCGGCGATAAATACGGGCGCCAGAAGATCCTGGCGATCACGATTGTGATTATGTCGATCAGTACCTTCTGTATCGGGTTAATCCCCTCTTACGCGACGATCGGTATCTGGGCGCCAATACTGTTGTTGCTGTGTAAAATGGCGCAGGGCTTCTCGGTTGGCGGGGAATATACCGGCGCGTCGATCTTTGTCGCGGAATATTCGCCGGATCGTAAACGCGGATTTATGGGAAGCTGGCTGGATTTTGGTTCTATCGCCGGATTCGTGCTGGGCGCGGGCGTGGTGGTCTTGATCTCGACGATTGTCGGCGAGGAGAATTTCCTTGAGTGGGGCTGGCGTATTCCGTTCTTTATCGCCCTGCCATTGGGGATTATTGGTCTCTACTTACGCCATGCGCTGGAGGAGACGCCAGCGTTTCAGCAGCACGTGGATAAACTGGAGCAGGGCGACCGCGAAGGGTTGCAGGATGGGCCGAAAGTCTCCTTTAAAGAGATTGCCACCAAACACTGGCGTAGCCTGTTGTCATGTATCGGTCTGGTGATTGCCACCAACGTGACCTACTACATGCTGCTCACCTACATGCCGAGCTACCTGTCGCATAACCTGCACTATTCTGAAGATCACGGCGTGTTGATTATCATCGCCATTATGATCGGGATGCTGTTTGTGCAGCCGGTGATGGGGCTGCTGAGCGACCGTTTCGGTCGACGTCCATTTGTGATTATGGGCAGCATTGCGCTGTTCGCGCTGGCGATCCCGGCCTTCATCCTGATTAACAGTAACGTTATTGGCCTGATTTTTGCAGGTTTGTTGATGCTGGCGGTGATTCTGAACTGCTTTACCGGGGTGATGGCCTCGACATTGCCGGCGATGTTTCCGACGCATATTCGTTATAGCGCGCTGGCGGCGGCTTTTAATATCTCTGTATTGATTGCCGGTCTGACGCCAACGCTGGCGGCCTGGCTGGTGGAAAGCTCGCAGGATCTGATGATGCCGGCGTATTATTTGATGGTCATCGCGGTGATAGGCTTGATTACCGGTATTTCCATGAAAGAGACGGCCAATCGTCCGTTAAAAGGCGCAACGCCAGCGGCGTCGGACATCCAGGAAGCGAAGGAAATTCTGGGCGAGCATTACGATAATATTGAGCAGAAAATCGACGACATCGATCAGGAAATTGCGGAGCTGCAGGTCAAACGTTCGCGTCTGGTACAGCAACATCCGCGTATCGATGAATAA > 1008 SeSPA_A1603 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 putative_metabolite_transport_protein_YjhB EDY23399.1 11 MIAKFFPWYSEITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGPGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLTGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRLKARRESFQSTKEF gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA23 Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA23 ABAM02000001 1631056..1632336 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1281 S._St._Paul_is_the_6th_most_common_serovar_infecting_humans_in_theUnited_States_and_has_emerged_in_other_countries_such_as_Japan.Yet,_there_is_little_genetic_data_on_this_serovar,_and_none_toexplain_its_prevalence_as_a_major_cause_of_human_illness._StrainSARA23_falls_within_the_main_clade_of_this_serovar. NA 22-AUG-2008 Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA23_gcontig_1112725669562,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5BY30_SALET.gb Samonella 197239853 J._Bacteriol._193_(14),_3556-3568_(2011) NA ABAM02000001 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1281 NA genomic_DNA NA SARA23 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 439846 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Saintpaul Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA ABAM02000001.1 GTGATAGCAAAATTCTTCCCGTGGTATAGCGAGATAACTCGTCCACAAAAAAATGCTTTATTTTCAGCATGGCTGGGTTACGTTTTTGACGGCTTCGACTTTATGCTGATTTTCTACATTATGTATCTGATCAAGGCTGACTTAGGATTGACAGATATGGAGGGCGCATTCCTTGCCACAGCGGCCTTTATTGGGCGACCATTTGGCGGGGCGCTATTTGGTCTGCTGGCAGACAAATTTGGCCGTAAGCCGTTGATGATGTGGTCGATAGTTGCCTATTCTGTAGGTACAGGGTTAAGTGGCCTGGCTTCCGGTGTAATTATGCTGACGCTTAGTCGCTTCATTGTCGGTATGGGGATGGCGGGGGAGTATGCTTGCGCTTCTACTTATGCCGTGGAAAGTTGGCCAAAGCATTTAAAATCTAAAGCGAGCGCATTTCTGGTTTCAGGTTTCGGTATTGGTAACATCATAGCAGCCTATTTTATGCCGTCATTTGCCGAAGCGTATGGTTGGCGTGCTGCTTTTTTTGTCGGTTTGCTACCCGTTCTTTTAGTAATCTACATCCGGGCCAGGGCTCCTGAATCTAAAGAGTGGGAAGAAGCTAAACTCAGTGGTCCCGGAAAGCATTCACAAAGTGCCTGGTCAGTTTTCTCTTTGTCAATGAAAGGGCTATTTAATCGAGCTCAATTTCCACTGACATTATGTGTATTTATTGTTCTGTTCTCTATTTTCGGCGCAAACTGGCCGATCTTTGGTCTACTGCCTACATATTTGACGGGAGAGGGCTTTGATACGGGCGTGGTCTCTAATTTAATGACGGCGGCGGCATTCGGCACTGTATTGGGAAATATCGTTTGGGGTCTGTGCGCAGATAGAATTGGTTTGAAGAAAACGTTCAGCATTGGTCTTCTCATGTCCTTTTTATTCATTTTCCCGTTATTCAGAATTCCGCAAGATAATTATTTACTGCTGGGCGCATGTTTATTCGGTTTAATGGCGACTAACGTAGGTGTTGGCGGGTTGGTTCCCAAATTTCTCTACGACTACTTTCCTCTTGAGGTTCGTGGTTTGGGTACCGGGCTGATTTATAATCTTGCTGCGACATCAGGCACATTCAATTCAATGGCGGCGACCTGGCTTGGAATAACAATGGGGCTAGGCGCTGCGCTAACGTTCATTGTTGCTTTCTGGACCGCAACAATTCTACTCATTATTGGCCTATCCATTCCGGATAGACTAAAAGCACGTCGTGAAAGTTTTCAATCAACAAAAGAATTTTAA > 1009 SeSPA_A1626 identified_by_match_to_protein_family_HMM_PF07690 multidrug_resistance_protein_MdtG EDY23592.1 11 MSPSDVPINWKRNLTVTWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMAIVMLLMGMAQNIWQFLILRALLGLLGGFIPNANALIATQVPRHKSGWALGTLSTGGVSGALLGPLAGGLLADHYGLRPVFFITASVLFICFLLTFFFIRENFLPVSKKEMLHVREVVASLKNPRLVLSLFVTTLIIQVATGSIAPILTLYVRELAGDVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILIVALIISVLLLIPMSFVQTPWQLALLRFLLGAADGALLPAVQTLLVYNSTNQIAGRIFSYNQSFRDIGNVTGPLMGAAISASYGFRAVFCVTAGVVLFNAIYSWNSLRRRRLAIE gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA23 Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA23 ABAM02000001 1650476..1651690 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1215 S._St._Paul_is_the_6th_most_common_serovar_infecting_humans_in_theUnited_States_and_has_emerged_in_other_countries_such_as_Japan.Yet,_there_is_little_genetic_data_on_this_serovar,_and_none_toexplain_its_prevalence_as_a_major_cause_of_human_illness._StrainSARA23_falls_within_the_main_clade_of_this_serovar. NA 22-AUG-2008 Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA23_gcontig_1112725669562,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5BY52_SALET.gb Samonella 197239853 J._Bacteriol._193_(14),_3556-3568_(2011) NA ABAM02000001 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1215 NA genomic_DNA NA SARA23 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 439846 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Saintpaul Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA ABAM02000001.1 TTATTCTATTGCCAGTCTGCGCCGTCGTAAGCTGTTCCATGAATAGATAGCATTGAACAACACCACGCCTGCCGTGACGCAGAATACGGCGCGGAAGCCATAGCTCGCGGAAATTGCGGCGCCCATGAGAGGGCCGGTGACGTTGCCGATATCGCGGAAAGATTGGTTGTAACTGAATATGCGCCCGGCTATCTGGTTGGTAGAGTTGTAAACCAGCAGAGTTTGAACGGCTGGCAGCAGCGCGCCATCCGCCGCGCCAAGCAGAAACCGCAATAGCGCGAGCTGCCACGGCGTTTGCACAAAAGACATTGGAATCAGCAGCAGTACGGAAATAATCAGCGCGACGATAAGAATCTTTTCCGGGCCAATTCTGTCGCCAAGCTTGCCGAGCCGGGGGGCGCTAAGTAATGCCGCCACGCCGGGAACGGACGCTATCATCCCGCTAATGAACGCAATATTACTGACATCTCCCGCCAGTTCGCGCACATAGAGCGTCAGGATGGGCGCAATAGACCCCGTCGCCACCTGAATAATCAGCGTGGTGACAAACAGGCTTAATACCAGGCGGGGATTTTTTAACGAGGCGACCACTTCCCGAACGTGAAGCATCTCTTTTTTGCTCACCGGCAGGAAATTCTCGCGAATGAAAAAGAAGGTGAGCAGAAAACAGATAAACAAAACGCTGGCGGTAATAAAAAAGACCGGACGAAGGCCGTAATGGTCGGCGAGCAGACCGCCCGCAAGTGGGCCAAGCAGAGCGCCGCTGACGCCGCCAGTAGAGAGCGTCCCTAACGCCCAGCCGCTTTTGTGGCGCGGCACCTGAGTGGCGATGAGCGCATTGGCGTTGGGAATAAATCCGCCCAGCAGGCCTAATAACGCGCGGAGGATCAGAAATTGCCAGATATTTTGCGCCATGCCCATTAACAGCATCACAATGGCCATGCCGAGAGCGGAACGCAACAGCATGATCTTACGCCCTTTACGATCCGCCAGACCGCCCCAAAAAGGGGACGCGATAGCTGAAAAGAGGAACGTAATACTAAAGACCAGCCCGGACCACATGTTGAGCGCGCTATGGCCTGTTACGCCGAGTTGCTCAACGTAGAGAGGGAGAAAAGGCATGACCAGGCTGAATGCCGCGCCGGTTAAAAAACAGCCCAGCCAGGTAACGGTTAGATTGCGTTTCCAGTTTATGGGGACATCAGAGGGTGACAT > 1010 SeSB_A3350 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 L-arabinose/proton_symport_protein EDY30273.1 11 MVSINHDSALTPRSLRDTRRMNMFVSVSAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSLGSAFASSVEVLIGARVILGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAQKGRHIEAEEVLRMLRDTSEKARDELNEIRESLKLKQGGWALFKANRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFIGITFWLIPETKNVTLEHIERKLMAGEKLRNIGV gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._SL480 Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._SL480 ABEJ01000004 202058..203476 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1419 Salmonella_Schwarzengrund_is_the_predominant_cause_of_salmonellosisin_Southeast_Asia,_a_major_source_of_imported_food_products_to_theUnited_States._It_was_also_the_cause_of_the_first_recognizedoutbreak_of_fluoroquinolone-resistant_salmonellosis_in_the_U.S.Recent_reports_suggest_that_high-level_fluoroquinolone_resistanceis_emerging_in_Salmonella_Schwarzengrund_in_different_parts_of_theworld._This_serovar_is_remarkably_disposed_to_nosocomial_spread,and_presents_a_unique_opportunity_to_identify_factors_thatfacilitate_this_important_type_of_transmission._Strain_SL480(DBS_GA_F25499)_is_antibiotic_susceptible_and_will_provide_acomparison_for_the_MDR_isolate_being_sequenced.Annotation_was_added_to_the_contigs_in_August_2008. NA 26-AUG-2008 Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._SL480_gcontig_1106389297830,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5CB74_SALET.gb Samonella 152940308 J._Bacteriol._193_(14),_3556-3568_(2011) NA ABEJ01000004 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1419 NA genomic_DNA NA SL480 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 454165 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA ABEJ01000004.1 TTACACGCCAATATTTCTTAGCTTCTCGCCCGCCATCAGCTTGCGTTCGATGTGCTCCAGGGTGACATTTTTGGTTTCCGGAATCAGCCAGAAAGTGATGCCGATAAAAGCGATATTCAGCGCGGTGTAAAGCCAGAATGTACCTGCCGCGCCAATGCTGTCCAACAGTGTCAGGAATGTCGCGCCGATGATCATGTTCGATACCCAGTTTGTCGTGGTTGAACAGGTAATGCCAAAATCACGGCATTTCAGCGGCTGGATTTCCGAACACAGTATCCACACCACCGGAGCGGCGCTCATCGCGTAACCGGCGATACACATCATCGTCATCCCAACGGAAAGCCAGGAGAGGCCGCTTGATGCCGTACCGTTATCAAACTGCATCAGGCAGTAGCCCAACACCAATGTCCCTAACGCCATTACGCTGAAACCGATTTTTAACGCCGGTTTACGCCCGGCCTTATCTACCGTAAAGACGGCGATAAACGTCGCGAACATAAAGGTCAGTCCGACCACCAGCGTAGCGATCATTTGCTGTTCCGTGGTGGTAAAGCCGGCCATTTTAAAAATGCGCGGCGCATAGTACATAATGATGTTCATGCCGGTGAACTGCTGCATTGCCTGTAGCAGCATACCGAGGAACACGGCGCGGCGAACATTGCGGTTAGCTTTAAATAATGCCCACCCGCCCTGCTTGAGTTTGAGGCTTTCCCGAATCTCATTCAGTTCATCACGGGCTTTTTCCGAGGTATCGCGCAGCATACGCAGCACCTCTTCCGCTTCAATATGGCGACCTTTTTGCGCCAGCCAGCGCGGACTATTCGGCAGGAATACCACCAGAATAATGAGCAACACCGCAGGCAGCGCCAGTACGCCCAACATCGCGCGCCAGTTGCCGCTGTAGCTGAATGCCGTATCGGATAAAAAAGCCAGCACAATGCCTAACGTCACCATCAGTTGATACATACTGATCATTTTGCCGCGAACATTTTCACTTGCCATTTCAGAGAGATAAAGCGGCGCGGTATAGGAGGCAATCCCTACTGCTACGCCCAGTATCACGCGGGCGCCAATCAATACTTCCACGCTGGAAGCAAACGCCGACCCCAGCGAGCCGAGCACAAACAAAATCGCGCCGGCCATCAGGCTATACTTACGCCCCAGCCGGAATGAAAGCCAACCGTTAAATAATGCGCCAATTGCCGCGCCAAGCATCATACTGCTGACGACCCATTCCTGCAGCCGGCTGGTCAGTACGAAATGGTCGGTAATAAAAGGCAGCGCCCCGGCGATAACGCCGATATCCAGACCAAATAACAGTCCCGCTACCGCTGCAGAAACCGAAACAAACATATTCATACGTCGTGTGTCGCGAAGCGAACGCGGCGTTAAAGCAGAGTCATGATTAATAGAGACCAT > 1011 SeSPB_A4620 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00879 sugar_transporter EDZ11723.1 11 MYVLCCIAALAGLMFGYSTAVITGVVLPLQQYYQLTPTETGWAVSSIVIGCIIGALVGGKIADKLGRKPALLIIAIIFIASSLGAAMSESFMIFSLSRIVCGFAVGMAGTASTMYMSELAPAEIRGKALGIYNISVVSGQVIVFIVNYLIAKGMPADVLVSQGWKTMLFAQVVPSIAMLAITLFLPESPAWCARNNRSEARSIKVLTRIYSGLTATDVAAIFDSMKETVRPQDNVAGGERTNLKSSPVLRYILLVGCCIAVLQQFTGVNVMNYYAPLVLQNSSTEVVMFQTIFIAVCNVVGSFIGMILFDRYGRIPIMKIGTIGSIVGLLIASYGLYTHDTGYITIFGILFFMLLFAVSWSVGAWVLISEVFPEKIKGFGMGLAVSLMWIANFLISLLFPVINDNAWLQETFGGAFSMWIFVVFNLVCYVFISRYVPETKGVPLTEIERLAENKLREIQGKRRDVIA gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA29 Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA29 ABAN01000009 128160..129563 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1404 Salmonella_enterica_subsp._enterica_serovar_Saintpaul_is_the_6thmost_common_serovar_infecting_humans_in_the_United_States_and_hasemerged_in_other_countries_such_as_Japan._Yet,_there_is_littlegenetic_data_on_this_serovar,_and_none_to_explain_its_prevalence_asa_major_cause_of_human_illness._Strain_SARA29_is_an_outlier_fromthe_main_clade_of_this_serovar.Annotation_was_added_to_the_contigs_in_September_2008. NA 19-SEP-2008 Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA29_gcontig_1104776683873,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5MMN6_SALET.gb Samonella 146394645 J._Bacteriol._193_(14),_3556-3568_(2011) NA ABAN01000009 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1404 NA genomic_DNA NA SARA29 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 439847 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Saintpaul Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA ABAN01000009.1 TCAGGCTATTACATCGCGACGTTTCCCCTGAATTTCACGCAGCTTGTTCTCGGCCAGCCGTTCAATTTCTGTTAGCGGCACCCCTTTTGTTTCCGGCACATAACGAGAAATAAAGACATAGCAGACCAAATTAAAGACGACAAAAATCCACATCGAGAAAGCGCCGCCGAAGGTCTCCTGCAGCCAGGCGTTATCATTTATGACCGGGAACAACAGTGAGATGAGGAAGTTGGCTATCCACATCAGGCTCACCGCCAGCCCCATCCCAAAACCTTTTATCTTTTCAGGGAAAACCTCAGAAATCAGTACCCATGCGCCAACGCTCCAGCTGACGGCAAACAGCAGCATAAAAAACAGGATGCCAAAGATGGTAATGTAGCCTGTATCGTGGGTGTACAAACCGTATGACGCGATCAACAGGCCGACAATTGAGCCGATGGTACCAATTTTCATAATCGGTATACGGCCATAGCGGTCGAACAGGATCATGCCGATAAAACTGCCCACCACATTACATACCGCGATAAAAATGGTCTGGAACATAACCACTTCGGTACTGCTGTTCTGCAACACCAGCGGCGCATAATAGTTCATTACGTTAACGCCTGTGAACTGTTGCAAAACGGCGATACAGCATCCAACCAACAGAATATAGCGGAGCACCGGCGAGCTTTTCAGGTTGGTGCGTTCTCCCCCGGCGACGTTGTCCTGTGGACGTACGGTTTCTTTCATGCTGTCAAAAATAGCGGCCACATCTGTGGCCGTTAATCCACTGTAGATCCGGGTAAGCACCTTTATCGAACGAGCTTCGCTGCGGTTGTTACGGGCGCACCATGCCGGTGATTCGGGTAGGAAAAGCGTAATCGCTAACATCGCAATGGAGGGTACCACTTGGGCAAAAAGCATAGTCTTCCAGCCCTGGGAAACCAGCACATCAGCAGGCATTCCTTTTGCTATCAGATAGTTGACTATAAACACGATAACCTGGCCAGATACCACGGAGATATTGTAAATGCCCAGCGCTTTGCCGCGAATTTCAGCAGGCGCCAGTTCAGACATATACATGGTGGATGCCGTTCCGGCCATCCCAACCGCAAAACCACACACAATGCGGGAAAGGGAGAAGATCATGAACGATTCACTCATCGCCGCCCCTAAGGAAGAAGCGATAAAAATGATCGCAATGATCAGAAGCGCAGGTTTACGCCCCAGTTTATCGGCAATTTTTCCACCGACCAGCGCGCCGATGATACAACCAATCACGATACTGGAAACGGCCCATCCGGTCTCGGTTGGCGTCAGTTGGTAATACTGCTGTAAAGGCAATACCACCCCGGTAATCACCGCCGTTGAATAACCAAACATCAATCCAGCCAGCGCCGCAATACAACACAGGACGTACAC > 1012 SeSPB_A0741 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 citrate-proton_symporter EDZ09573.1 11 MAQHTPATSRAGTFGAILRVTSGNFLEQFDFFLFGFYATYIARTFFPAESEFASLMLTFAVFGSGFLMRPVGAIVLGAYIDRIGRRKGLMVTLAIMGCGTLLIALVPGYQTIGLAAPALVLLGRLLQGFSAGVELGGVSVYLSEIATPGNKGFYTSWQSASQQVAIVVAALIGYSLNITLGHDAISEWGWRIPFFIGCMIIPLIFVLRRSLQETEAFLQRKHRPDTREIFATIAKNWRIITAGTLLVAMTTTTFYFITVYTPTYGRTVLNLSARDSLIVTMLVGVSNFIWLPIGGAISDRIGRRAVLMGITLLALITTWPVMQWLTAAPDFTRMTLVLLWFSFFFGMYNGAMVAALTEVMPVYVRTVGFSLAFSLATAIFGGLTPAISTALVKLTGDKSSPGWWLMCAALCGLAATAMLFVRLSRGYIAAENKA gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA29 Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA29 ABAN01000051 5883..7187 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1305 Salmonella_enterica_subsp._enterica_serovar_Saintpaul_is_the_6thmost_common_serovar_infecting_humans_in_the_United_States_and_hasemerged_in_other_countries_such_as_Japan._Yet,_there_is_littlegenetic_data_on_this_serovar,_and_none_to_explain_its_prevalence_asa_major_cause_of_human_illness._Strain_SARA29_is_an_outlier_fromthe_main_clade_of_this_serovar.Annotation_was_added_to_the_contigs_in_September_2008. NA 19-SEP-2008 Salmonella_enterica_subsp._enterica_serovar_Saintpaul_str._SARA29_gcontig_1104776683825,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5MTN1_SALET.gb Samonella 146394603 J._Bacteriol._193_(14),_3556-3568_(2011) NA ABAN01000051 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1305 NA genomic_DNA NA SARA29 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 439847 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Saintpaul Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA ABAN01000051.1 ATGGCACAACACACACCTGCAACATCGCGCGCCGGCACGTTCGGCGCAATACTGCGCGTGACAAGCGGCAATTTTCTTGAACAGTTTGATTTTTTCTTGTTCGGATTTTACGCCACCTATATCGCCAGAACGTTTTTTCCGGCGGAAAGCGAATTTGCCTCATTAATGTTGACCTTTGCCGTCTTTGGCTCCGGTTTTTTAATGCGCCCCGTCGGCGCGATTGTGCTTGGCGCCTATATTGACAGAATCGGACGTCGTAAAGGGCTGATGGTGACGCTGGCGATTATGGGCTGCGGTACGTTGCTCATCGCCCTCGTCCCCGGCTACCAAACGATCGGCCTGGCAGCGCCTGCGTTGGTGCTGCTGGGCCGGTTATTACAAGGATTTTCTGCGGGCGTTGAGTTAGGCGGCGTCTCGGTCTATCTGTCCGAAATCGCAACGCCAGGCAATAAAGGGTTTTATACCAGCTGGCAATCCGCCAGTCAGCAGGTCGCGATCGTTGTCGCCGCGTTGATTGGTTATAGCCTGAATATCACGCTGGGACACGACGCGATATCGGAGTGGGGCTGGCGAATTCCGTTCTTTATCGGCTGTATGATCATTCCGCTGATTTTTGTTTTACGTCGTTCATTACAAGAAACAGAAGCGTTTTTACAACGCAAGCATCGCCCCGACACCAGGGAAATTTTTGCAACTATCGCCAAAAACTGGCGCATTATTACAGCCGGAACGCTGCTGGTGGCGATGACCACCACAACGTTTTATTTTATCACCGTTTATACGCCGACCTATGGCAGAACCGTGCTTAATCTCAGCGCGCGGGACAGTTTGATCGTCACCATGTTAGTGGGGGTGTCCAATTTTATCTGGTTACCCATTGGCGGCGCGATTTCCGACCGGATTGGCCGTCGCGCTGTGTTAATGGGCATTACGTTGCTGGCGCTGATCACCACCTGGCCCGTCATGCAGTGGCTGACCGCCGCGCCCGACTTTACCCGCATGACGCTGGTACTGCTGTGGTTCTCTTTCTTTTTTGGCATGTATAACGGCGCAATGGTCGCGGCGTTAACCGAAGTGATGCCAGTCTATGTGCGTACCGTTGGTTTCTCGCTGGCCTTTAGCCTGGCGACGGCGATTTTTGGCGGCCTGACGCCGGCCATCTCTACCGCGCTGGTAAAGTTAACCGGCGATAAAAGCTCGCCCGGCTGGTGGCTGATGTGCGCAGCGTTATGTGGACTTGCCGCGACGGCGATGCTGTTTGTACGTCTGAGTCGCGGCTATATCGCGGCAGAAAATAAAGCCTGA > 1013 SeJ_A0100 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_PF08946;_match_to_protein_family_HMM_TIGR00883 proline/betaine_transporter EDZ09193.1 11 MLKRKKIKPITLGDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEENFLEWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLSCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVIMGSIALFALAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLIAGLTPTLAAWLVESSQDLMMPAYYLMVIAVIGLITGISMKETANRPLKGATPAASDIQEAKEILGEHYDNIEQKIDDIDQEIAELQVKRSRLVQQHPRIDE gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Javiana_str._GA_MM04042433 Salmonella_enterica_subsp._enterica_serovar_Javiana_str._GA_MM04042433 ABEH02000001 119666..121168 Rosovitz,M.J.,_McDermott,P.,_White,D.,_LeClerc,J.E.,_Mammel,M.K.,_Cebula,T.A._and_Ravel,J. NA 0:1503 Currently,_Salmonella_enterica_subsp._enterica_serovar_Javiana_isthe_5th_most_commonly_recovered_serotype_from_human_illness_in_boththe_NARMS_and_PHLIS_programs._Produce_outbreaks_due_to_Salmonellaenterica_subsp._enterica_serovar_Javiana_emphasize_both_thepotential_of_new_or_non-traditional_Salmonella_serotypes_to_causewidespread_foodborne_illness,_and_the_unique_challenges_inpreventing_foodborne_epidemics_where_ready-to-eat_fruits_andvegetables_are_the_vehicle. NA 18-SEP-2008 Salmonella_enterica_subsp._enterica_serovar_Javiana_str._GA_MM04042433_gcontig_1113115915063,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5N8W7_SALET.gb Samonella 204323313 Submitted_(18-JUL-2007)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ABEH02000001 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1503 NA genomic_DNA NA GA_MM04042433 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 454167 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella Direct_Submission NA ABEH02000001.1 ATGCTGAAAAGGAAAAAAATAAAACCGATTACACTGGGCGATGTGACCATCATTGATGATGGTAAACTTCGCAAAGCGATTACCGCCGCCTCGCTGGGCAACGCGATGGAGTGGTTTGATTTTGGTGTTTATGGATTTGTTGCCTACGCGTTGGGTAAAGTCTTTTTCCCCGGTGCCGATCCCAGCGTCCAGATGATTGCCGCGCTGGCCACGTTTTCCGTTCCCTTCCTGATTCGTCCGCTCGGCGGGTTATTCTTTGGTATGCTCGGCGATAAATACGGGCGCCAGAAGATCCTGGCGATCACGATTGTGATTATGTCGATCAGTACTTTCTGTATCGGGTTAATTCCCTCTTACGCGACGATCGGTATCTGGGCGCCAATACTGTTGTTGCTATGTAAAATGGCGCAGGGCTTCTCGGTTGGCGGGGAATATACCGGCGCGTCGATCTTTGTCGCGGAATATTCGCCGGATCGTAAACGCGGATTTATGGGAAGCTGGCTGGATTTTGGTTCCATCGCCGGGTTCGTGCTGGGCGCGGGCGTGGTGGTCTTAATCTCAACGATTGTCGGCGAGGAGAATTTCCTGGAGTGGGGCTGGCGTATTCCGTTCTTTATCGCCCTGCCATTGGGAATTATTGGTCTCTACTTACGCCATGCGCTGGAAGAGACGCCAGCGTTTCAGCAGCACGTGGATAAACTGGAGCAGGGCGACCGCGAAGGGCTGCAGGATGGGCCGAAAGTCTCCTTTAAAGAGATTGCCACCAAACACTGGCGTAGCCTGTTGTCATGTATCGGTCTGGTGATTGCCACCAACGTGACCTACTACATGCTGCTCACCTACATGCCGAGCTACCTGTCGCATAACCTGCACTATTCTGAAGATCACGGCGTGTTGATTATCATCGCCATTATGATCGGGATGCTGTTTGTGCAGCCGGTGATGGGGCTGCTGAGCGACCGTTTCGGTCGACGTCCATTTGTGATTATGGGCAGCATTGCGCTGTTTGCGCTGGCGATCCCGGCCTTCATCCTGATTAACAGTAACGTTATTGGCCTGATTTTTGCCGGTTTGTTGATGCTGGCGGTGATTCTGAACTGCTTTACCGGGGTGATGGCCTCGACATTGCCGGCGATGTTTCCGACGCATATTCGTTACAGCGCGCTGGCGGCGGCTTTTAATATCTCTGTATTGATTGCCGGTCTGACGCCAACGCTGGCGGCCTGGCTGGTGGAAAGCTCGCAGGATCTGATGATGCCGGCGTATTATTTGATGGTCATCGCGGTGATAGGCTTGATTACCGGTATTTCCATGAAAGAGACGGCCAATCGTCCGTTAAAAGGCGCAACGCCAGCGGCGTCGGACATCCAGGAAGCGAAGGAAATTCTGGGCGAGCATTACGATAATATTGAGCAGAAAATCGACGACATCGATCAGGAAATCGCGGAGCTGCAGGTCAAACGTTCGCGTCTGGTACAGCAACATCCGCGTATCGATGAATAA > 1014 SeJ_A1063 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 citrate-proton_symporter EDZ05682.1 11 MAQHTPATSRAGTFGAILRVTSGNFLEQFDFFLFGFYATYIARTFFPAESEFASLMLTFAVFGSGFLMRPVGAIVLGAYIDRIGRRKGLMVTLAIMGCGTLLIALVPGYQTIGLAAPALVLLGRLLQGFSAGVELGGVSVYLSEIATPGNKGFYTSWQSASQQVAIVVAALIGYSLNITLGHDAISEWGWRIPFFIGCMIIPLIFVLRRSLQETEAFLQRKHRPDTREIFATIAKNWRIITAGTLLVAMTTTTFYFITVYTPTYGRTVLNLSARDSLIVTMLVGVSNFIWLPIGGAISDRIGRRAVLMGITLLALITTWPVMQWLTAAPDFTRMTLVLLWFSFFFGMYNGAMVAALTEVMPVYVRTVGFSLAFSLATAIFGGLTPAISTALVKLTGDKSSPGWWLMCAALCGLAATAMLFVRLSRGYIAAENKA gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Javiana_str._GA_MM04042433 Salmonella_enterica_subsp._enterica_serovar_Javiana_str._GA_MM04042433 ABEH02000009 212001..213305 Rosovitz,M.J.,_McDermott,P.,_White,D.,_LeClerc,J.E.,_Mammel,M.K.,_Cebula,T.A._and_Ravel,J. NA 0:1305 Currently,_Salmonella_enterica_subsp._enterica_serovar_Javiana_isthe_5th_most_commonly_recovered_serotype_from_human_illness_in_boththe_NARMS_and_PHLIS_programs._Produce_outbreaks_due_to_Salmonellaenterica_subsp._enterica_serovar_Javiana_emphasize_both_thepotential_of_new_or_non-traditional_Salmonella_serotypes_to_causewidespread_foodborne_illness,_and_the_unique_challenges_inpreventing_foodborne_epidemics_where_ready-to-eat_fruits_andvegetables_are_the_vehicle. NA 18-SEP-2008 Salmonella_enterica_subsp._enterica_serovar_Javiana_str._GA_MM04042433_gcontig_1113115915081,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5NI87_SALET.gb Samonella 204320362 Submitted_(18-JUL-2007)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ABEH02000009 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1305 NA genomic_DNA NA GA_MM04042433 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 454167 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella Direct_Submission NA ABEH02000009.1 TCAGGCTTTATTTTCTGCCGCGATATAGCCGCGACTCAGACGTACAAACAGCATCGCCGTCGCGGCAAGTCCACATAACGCTGCGCACATCAGCCACCAGCCGGGCGAGCTTTTATCGCCGGTTAACTTTACCAGCGCGGTAGAGATGGCCGGCGTCAGGCCGCCAAAAATCGCCGTCGCCAGGCTAAAGGCCAGCGAGAAACCAACGGTACGCACATAGACTGGCATCACTTCGGTTAACGCCGCGACCATTGCGCCGTTATACATGCCAAAAAAGAAAGAGAACCACAGCAGTACCAGCGTCATGCGGGTAAAGTCGGGCGCGGCGGTCAGCCACTGCATGACGGGCCAGGTGGTGATCAGCGCCAGCAACGTAATGCCCATTAACACGGCGCGACGGCCAATCCGGTCGGAAATCGCGCCGCCAATGGGTAACCAGATAAAATTGGACACCCCCACTAACATGGTGACGATCAAACTGTCCCGCGCGCTGAGATTAAGCACGGTTCTGCCATAGGTCGGCGTATAAACGGTGATAAAATAAAACGTTGTGGTGGTCATCGCCACCAGCAGCGTTCCGGCTGTAATAATGCGCCAGTTTTTGGCGATAGTTGCAAAAATTTCCCTGGTGTCGGGGCGATGCTTGCGTTGTAAAAACGCTTCTGTTTCTTGTAATGAACGACGTAAAACAAAAATCAGCGGAATGATCATACAGCCGATAAAGAACGGAATTCGCCAGCCCCACTCCGATATCGCGTCGTGTCCCAGCGTGATATTCAGGCTATAACCAATCAACGCGGCGACAACGATCGCGACCTGCTGACTGGCAGATTGCCAGCTGGTATAAAACCCTTTATTGCCTGGCGTTGCGATTTCGGACAGATAGACCGAGACGCCGCCTAACTCAACGCCCGCAGAAAATCCTTGTAATAACCGGCCCAACAGCACCAACGCAGGCGCTGCCAGGCCGATCGTTTGGTAGCCGGGGACGAGGGCGATGAGCAACGTACCGCAGCCCATAATCGCCAGTGTCACCATCAGCCCTTTACGGCGTCCGATTCTGTCAATATAGGCGCCAAGCACAATCGCGCCGACGGGGCGCATTAAAAAACCGGAGCCAAAGACGGCAAAGGTCAACATTAATGAGGCAAATTCGCTTTCCGCCGGAAAAAACGTTCTGGCGATATAGGTGGCGTAAAATCCGAACAAGAAAAAATCAAACTGTTCAAGAAAATTGCCGCTTGTCACGCGCAGTATTGCGCCGAACGTGCCGGCGCGCGATGTTGCAGGTGTGTGTTGTGCCAT > 1015 SeJ_A2357 identified_by_match_to_protein_family_HMM_PF07690 multidrug_resistance_protein_MdtG EDZ05383.1 11 MSPSDVPINWKRNLTVTWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMAIVMLLMGMAQNIWQFLILRALLGLLGGFIPNANALIATQVPRHKSGWALGTLSTGCVSGALLGPLAGGLLADHYGLRPVFFITASVLFICFLLTFFFIRENFLPVSKKEMLHVREVVASLKNPRLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILIVALIISVLLLIPMSFVQTPWQLALLRFLLGAADGALLPAVQTLLVYNSTNQIAGRIFSYNQSFRDIGNVTGPLMGAAISASYGFRAVFCVTAGVVLFNAIYSWNSLRRRRLAIE gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Javiana_str._GA_MM04042433 Salmonella_enterica_subsp._enterica_serovar_Javiana_str._GA_MM04042433 ABEH02000010 79460..80674 Rosovitz,M.J.,_McDermott,P.,_White,D.,_LeClerc,J.E.,_Mammel,M.K.,_Cebula,T.A._and_Ravel,J. NA 0:1215 Currently,_Salmonella_enterica_subsp._enterica_serovar_Javiana_isthe_5th_most_commonly_recovered_serotype_from_human_illness_in_boththe_NARMS_and_PHLIS_programs._Produce_outbreaks_due_to_Salmonellaenterica_subsp._enterica_serovar_Javiana_emphasize_both_thepotential_of_new_or_non-traditional_Salmonella_serotypes_to_causewidespread_foodborne_illness,_and_the_unique_challenges_inpreventing_foodborne_epidemics_where_ready-to-eat_fruits_andvegetables_are_the_vehicle. NA 18-SEP-2008 Salmonella_enterica_subsp._enterica_serovar_Javiana_str._GA_MM04042433_gcontig_1113115915071,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5NIH4_SALET.gb Samonella 204320144 Submitted_(18-JUL-2007)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ABEH02000010 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1215 NA genomic_DNA NA GA_MM04042433 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 454167 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella Direct_Submission NA ABEH02000010.1 TCATTCTATTGCCAGTCTGCGCCGTCGTAAGCTGTTCCATGAATAGATAGCATTGAACAATACCACGCCTGCCGTGACGCAGAAGACGGCGCGGAAGCCATAGCTCGCGGAAATTGCGGCGCCCATGAGAGGGCCGGTGACGTTGCCGATATCGCGGAAAGATTGGTTGTAACTGAATATGCGCCCGGCTATCTGGTTGGTAGAGTTGTAAACCAGCAGAGTTTGAACGGCTGGCAGCAGCGCGCCATCCGCCGCGCCAAGCAGAAACCGCAATAGCGCGAGCTGCCACGGCGTTTGCACAAAAGACATTGGAATCAGCAGCAGTACGGAAATAATCAGCGCGACGATAAGGATCTTTTCCGGGCCAATTCTGTCGCCGAGCTTGCCGAGCCGGGGGGCGCTAAGTAATGCCGCCACGCCGGGAACGGACGCTATCATCCCGCTAATGAACGCAATATTACTGACATTTCCCGCGAGTTCGCGCACATAGAGTGTCAGGATGGGCGCAATAGACCCCGTCGCCACCTGAATAATCAGCGTGGTGACAAACAGGCTTAACACCAGGCGGGGATTTTTTAACGAGGCGACCACTTCCCGAACGTGAAGCATCTCTTTTTTGCTCACCGGCAGGAAATTCTCGCGAATAAAAAAGAAGGTGAGCAGAAAACAGATAAACAAAACGCTGGCGGTAATAAAAAAGACCGGGCGAAGACCGTAATGGTCGGCGAGCAGACCACCCGCAAGTGGGCCAAGCAGAGCGCCGCTGACGCAGCCAGTAGAGAGCGTCCCTAGCGCCCAGCCGCTTTTGTGGCGCGGCACCTGAGTGGCGATGAGCGCATTGGCGTTGGGAATAAATCCGCCCAACAGGCCTAATAACGCGCGGAGGATCAGAAATTGCCAGATATTTTGCGCCATGCCCATTAACAGCATGACAATGGCCATGCCGAGAGCAGAACGCAACAGCATGATCTTACGCCCTTTACGATCCGCCAGACCGCCCCAAAAAGGGGAAGCGATAGCTGAAAAGAGGAACGTAATACTAAAGACCAGCCCGGACCACATGTTGAGCGCGCTATGGCCTGTTACGCCGAGTTGCTCAACGTAGAGAGGGAGAAAAGGCATGACCAGACTGAATGCCGCGCCGGTTAAAAAACAGCCCAGCCAGGTAACGGTTAGATTGCGTTTCCAGTTTATGGGGACATCAGAGGGTGACAT > 1016 SeKB_A1770 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 inner_membrane_metabolite_transport_protein_YdfJ EDZ22205.1 11 MRAAVSGWLGTALEFMDFQLYSLGAALVFHEIFFPEQSAAMALILAMGTYGAGYIARIIGAFVFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGIFAPVLLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSLVAMGTNCGTLSATAIWAVMFFALEREQLIAWGWRIPFLASVVVMIFAIWLRMNLKESPVFEKVSEGEKSPALTPASENTLGAMFTSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKSIPTDALMISSVIGFITIPLLGWLSDKYGRRLPYIILNISAIILAWPMLSIVVDKTYSPGVIMAALIVIHNFAVLGLFALENITMAEIFGSRNRFTRMAISKEAGGLVAVGFGPVLAGIFCNMTDSWLPILIMLVLYSCIGLISALLMPEVRDRDLSLPEDAAEATAAEKLRHSATQTS gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Kentucky_str._CDC_191 Salmonella_enterica_subsp._enterica_serovar_Kentucky_str._CDC_191 ABEI01000002 83248..84588 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1341 Salmonella_enterica_subsp._enterica_serovar_Kentucky_is_widespreadin_the_food_supply_but_very_rarely_associated_with_human_illness.The_USDA_reported_that_in_2002,_Salmonella_enterica_subsp._entericaserovar_Kentucky_represented_17%_of_Salmonella_isolatescontaminating_broilers,_but_only_0.1%_of_human_isolates._Thus,Salmonella_enterica_subsp._enterica_serovar_Kentucky_can_beconsidered_unsuccessful_as_a_human_pathogen._Information_from_thisserotype_will_help_identify_and_categorize_metabolic_pathways_andstructural_elements_common_to_the_genus;_and_by_contrast,_revealgenes_involved_in_the_pathogenesis_of_virulent_serovars._Strain_CDC191_is_antibiotic_susceptible_and_will_provide_a_comparison_for_theMDR_isolate_being_sequenced.Annotation_was_added_to_the_contigs_in_September_2008. NA 19-SEP-2008 Salmonella_enterica_subsp._enterica_serovar_Kentucky_str._CDC_191_gcontig_1106389417306,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5NL56_SALET.gb Samonella 152940242 J._Bacteriol._193_(14),_3556-3568_(2011) NA ABEI01000002 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1341 NA genomic_DNA NA CDC_191 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 454231 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Kentucky Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA ABEI01000002.1 GTGCGCGCTGCCGTATCTGGCTGGTTAGGCACCGCGCTTGAATTTATGGATTTTCAGTTATATTCACTAGGCGCGGCTCTGGTCTTCCATGAGATATTTTTCCCGGAACAGTCTGCCGCGATGGCGCTTATCCTGGCAATGGGCACCTATGGTGCAGGTTATATAGCCAGAATCATCGGCGCCTTTGTTTTTGGTAAAATGGGCGACCGCATCGGACGAAAAAAAGTGTTGTTTATTACCATCACCATGATGGGGATCTGCACCACGCTGATTGGCGTACTGCCGACGTATGCGCAAATCGGCATTTTTGCGCCAGTATTACTGGTGACATTGCGAATTATACAGGGGCTGGGCGCCGGGGCGGAAATTTCCGGCGCGGGTACCATGCTGGCCGAGTATGCGCCGAAAGGAAAGCGTGGCATTATTTCCTCGCTGGTCGCGATGGGCACCAACTGCGGTACGTTGAGCGCGACGGCGATCTGGGCGGTGATGTTCTTTGCGCTTGAACGCGAACAACTGATCGCCTGGGGATGGCGTATTCCTTTCCTGGCGAGCGTCGTTGTCATGATATTCGCGATCTGGCTGCGAATGAATCTGAAAGAAAGTCCGGTATTCGAAAAAGTAAGCGAAGGCGAAAAATCGCCAGCGTTAACGCCTGCGTCAGAAAATACATTGGGCGCGATGTTTACCAGCAAATCTTTCTGGCTGGCCACCGGTTTACGTTTTGGACAAGCTGGGAATTCGGGGCTTATTCAAACCTTCCTTGCCGGATATTTAGTTCAGACGTTATTATTTAACAAATCTATCCCAACCGATGCGTTAATGATAAGTTCCGTAATTGGTTTTATCACTATCCCACTCTTGGGGTGGTTGTCCGATAAATACGGTCGTCGGCTGCCGTATATAATATTGAATATCTCCGCGATTATTCTCGCCTGGCCGATGCTGTCTATTGTGGTAGATAAAACGTATAGCCCTGGCGTAATTATGGCGGCGCTCATTGTTATTCATAACTTTGCCGTGCTGGGATTATTTGCGCTGGAAAACATCACCATGGCGGAAATTTTCGGATCGCGTAATCGCTTCACCCGGATGGCGATTTCAAAAGAGGCAGGGGGGCTGGTGGCGGTCGGTTTTGGCCCTGTTCTTGCGGGGATCTTTTGTAACATGACCGATTCCTGGCTGCCCATCTTAATTATGCTGGTGCTCTACTCGTGTATTGGTCTGATTTCTGCGCTGTTGATGCCGGAGGTCAGAGATCGCGACCTGAGTTTGCCTGAGGATGCGGCGGAAGCGACAGCGGCAGAGAAGTTACGCCACTCCGCAACCCAGACGAGTTAA > 1017 SeW_A1850 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 inner_membrane_metabolite_transport_protein_YdfJ EDZ30604.1 11 MRAAVSGWLGTALEFMDFQLYSLGAALVFHEIFFPEQSAAMALILAMGTYGAGYIARIIGAFVFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGIFAPVLLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSLVAMGTNCGTLSATAIWAVMFFALEREQLIAWGWRIPFLASVVVMIFAIWLRMNLKESPVFEKVSEGEKSPALTPASENTLGAMFTSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKSIPTDALMISSVIGFITIPLLGWLSDKYGRRLPYIILNISAIILAWPMLSIVVDKTYSPGVIMAALIVIHNFAVLGLFALENITMAEIFGSRNRFTRMAISKEAGGLVAVGFGPVLAGIFCNMTDSWLPILIMLVLYSCIGLISALLMPEVRDRDLSLPEDAAEATAAEKLRHSATQTS gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._HI_N05-537 Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._HI_N05-537 ABFF01000004 79673..81013 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1341 In_the_1980s,_Salmonella_enterica_subsp._enterica_serovarWeltevreden_emerged_to_supplant_Enteritidis_and_Typhimurium_as_thedominant_serovar_associated_with_foodborne_nontyphoidalsalmonellosis_in_Malaysia_and_Thailand,_and_is_common_in_othercountries_of_southeast_Asia._In_the_U.S.,_Salmonella_entericasubsp._enterica_serovar_Weltevreden_was_the_most_common_serovarfound_in_seafood_mainly_imported_from_Thailand_and_Malaysia._In_theU.S.,_however,_Salmonella_enterica_subsp._enterica_serovarWeltevreden_has_not_been_isolated_from_human_clinical_cases._Whilethe_low_prevalence_of_resistance_in_Salmonella_enterica_subsp.enterica_serovar_Weltevreden_may_reflect_a_low_past_exposure_toantimicrobials,_it_also_raises_the_possibility_that_some_serovarsmay_be_less_disposed_to_acquire_resistance.Annotation_was_added_to_the_contigs_in_September_2008. NA 19-SEP-2008 Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._HI_N05-537_gcontig_1106390373056,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5PDW7_SALET.gb Samonella 156711407 J._Bacteriol._193_(14),_3556-3568_(2011) NA ABFF01000004 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1341 NA genomic_DNA NA HI_N05-537 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 465518 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Weltevreden Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA ABFF01000004.1 GTGCGCGCTGCCGTATCTGGCTGGTTAGGCACCGCGCTTGAATTTATGGATTTTCAGTTATATTCACTAGGCGCGGCTCTGGTCTTCCATGAGATATTTTTTCCGGAACAGTCTGCCGCGATGGCGCTTATTCTGGCAATGGGCACCTATGGTGCAGGTTATATAGCCAGAATTATCGGCGCCTTTGTTTTTGGTAAAATGGGCGACCGCATCGGACGAAAAAAAGTATTGTTTATTACCATCACCATGATGGGGATCTGCACCACGCTGATTGGCGTACTGCCGACGTATGCGCAAATCGGCATTTTTGCGCCAGTATTACTGGTGACATTGCGAATTATACAGGGGTTGGGCGCCGGGGCGGAAATTTCCGGCGCGGGTACCATGCTGGCCGAGTATGCGCCGAAAGGAAAGCGTGGCATCATTTCCTCGCTGGTCGCGATGGGCACCAACTGCGGTACGTTGAGCGCGACGGCGATCTGGGCGGTGATGTTCTTTGCGCTTGAACGCGAACAACTGATCGCCTGGGGATGGCGTATTCCTTTCCTGGCGAGCGTCGTTGTCATGATATTCGCGATCTGGCTGCGAATGAATCTGAAAGAAAGTCCGGTATTCGAAAAAGTAAGCGAAGGCGAAAAATCGCCAGCGTTAACGCCTGCGTCAGAAAATACATTGGGCGCGATGTTTACCAGCAAATCTTTCTGGCTGGCCACCGGTTTACGTTTTGGGCAGGCGGGGAATTCCGGGCTTATTCAAACCTTCCTTGCCGGATATTTAGTTCAGACGTTATTATTTAACAAATCTATCCCAACCGATGCGTTAATGATAAGTTCCGTAATTGGTTTTATCACTATCCCACTCTTGGGGTGGTTGTCCGATAAATACGGTCGTCGGCTGCCGTATATAATATTGAATATCTCCGCGATTATTCTCGCCTGGCCGATGCTGTCTATTGTGGTAGATAAAACGTATAGCCCTGGCGTAATTATGGCGGCGCTCATTGTTATTCATAACTTTGCCGTGCTGGGATTATTTGCGCTGGAAAACATCACCATGGCGGAAATTTTCGGATCGCGTAATCGCTTCACCCGGATGGCGATTTCAAAAGAGGCAGGAGGCCTGGTGGCGGTTGGCTTTGGCCCTGTTCTTGCGGGGATCTTTTGTAACATGACCGATTCCTGGCTGCCCATCTTAATTATGCTGGTGCTCTACTCGTGTATTGGTCTGATTTCTGCGCTGTTGATGCCGGAGGTCAGAGATCGCGACCTGAGTTTGCCTGAGGATGCGGCGGAAGCGACAGCGGCAGAGAAGTTACGCCACTCCGCAACCCAGACGAGTTAA > 1018 SeW_A0785 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 citrate-proton_symporter EDZ29949.1 11 MAQHTPATSRAGTFGAILRVTSGNFLEQFDFFLFGFYATYIARTFFPAESEFASLMLTFAVFGSGFLMRPVGAIVLGAYIDRIGRRKGLMVTLAIMGCGTLLIALVPGYQTIGLAAPALVLLGRLLQGFSAGVELGGVSVYLSEIATPGNKGFYTSWQSASQQVAIVVAALIGYSLNITLGHDAISEWGWRIPFFIGCMIIPLIFVLRRSLQETEAFLQRKHRPDTREIFATIAKNWRIITAGTLLVAMTTTTFYFITVYTPTYGRTVLNLSARDSLIVTMLVGVSNFIWLPIGGAISDRIGRRAVLMGITLLALITTWPVMQWLTAAPDFTRMTLVLLWFSFFFGMYNGAMVAALTEVMPVYVRTVGFSLAFSLATAIFGGLTPAISTALVKLTGDKSSPGWWLMCAALCGLAATAMLFVRLSRGYIAAENKA gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._HI_N05-537 Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._HI_N05-537 ABFF01000006 238239..239543 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1305 In_the_1980s,_Salmonella_enterica_subsp._enterica_serovarWeltevreden_emerged_to_supplant_Enteritidis_and_Typhimurium_as_thedominant_serovar_associated_with_foodborne_nontyphoidalsalmonellosis_in_Malaysia_and_Thailand,_and_is_common_in_othercountries_of_southeast_Asia._In_the_U.S.,_Salmonella_entericasubsp._enterica_serovar_Weltevreden_was_the_most_common_serovarfound_in_seafood_mainly_imported_from_Thailand_and_Malaysia._In_theU.S.,_however,_Salmonella_enterica_subsp._enterica_serovarWeltevreden_has_not_been_isolated_from_human_clinical_cases._Whilethe_low_prevalence_of_resistance_in_Salmonella_enterica_subsp.enterica_serovar_Weltevreden_may_reflect_a_low_past_exposure_toantimicrobials,_it_also_raises_the_possibility_that_some_serovarsmay_be_less_disposed_to_acquire_resistance.Annotation_was_added_to_the_contigs_in_September_2008. NA 19-SEP-2008 Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._HI_N05-537_gcontig_1106390375194,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5PG53_SALET.gb Samonella 156711405 J._Bacteriol._193_(14),_3556-3568_(2011) NA ABFF01000006 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1305 NA genomic_DNA NA HI_N05-537 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 465518 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Weltevreden Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA ABFF01000006.1 ATGGCACAACACACACCTGCAACATCGCGCGCCGGCACGTTCGGCGCAATACTGCGCGTGACAAGCGGCAATTTTCTTGAACAGTTTGATTTTTTCTTGTTCGGATTTTACGCCACCTATATCGCCAGAACGTTTTTTCCGGCGGAAAGCGAATTTGCCTCATTAATGTTGACCTTTGCCGTCTTTGGCTCCGGTTTTTTAATGCGCCCCGTCGGCGCGATTGTGCTTGGCGCCTATATTGACAGAATCGGACGTCGTAAAGGGCTGATGGTGACGCTGGCGATTATGGGCTGCGGTACGTTGCTCATCGCCCTCGTCCCCGGCTACCAAACGATCGGCCTGGCAGCGCCTGCATTGGTGCTGCTGGGCCGGTTATTACAAGGATTTTCTGCGGGCGTTGAGTTAGGCGGCGTCTCGGTCTATCTGTCCGAAATCGCAACGCCAGGCAATAAAGGGTTTTATACCAGCTGGCAATCCGCCAGTCAGCAGGTCGCGATCGTTGTCGCCGCGTTGATTGGTTATAGCCTGAATATCACGCTGGGACACGACGCGATATCGGAGTGGGGCTGGCGAATTCCGTTCTTTATCGGCTGTATGATCATTCCGCTGATTTTTGTTTTACGTCGTTCATTACAAGAAACAGAAGCGTTTTTACAACGCAAGCATCGCCCCGACACCAGGGAAATTTTTGCAACTATCGCCAAAAACTGGCGCATTATTACAGCCGGAACGCTGCTGGTGGCGATGACCACCACAACATTTTATTTTATCACCGTTTATACGCCGACCTATGGCAGAACCGTGCTTAATCTCAGCGCGCGGGACAGTTTGATCGTCACCATGTTGGTGGGGGTATCCAATTTTATCTGGTTACCCATTGGCGGCGCGATTTCCGACCGGATTGGCCGTCGCGCCGTGTTAATGGGCATTACGTTGCTGGCGCTGATCACCACCTGGCCCGTCATGCAGTGGCTGACCGCCGCGCCCGACTTTACCCGCATGACGCTGGTACTGCTGTGGTTCTCTTTCTTTTTTGGCATGTATAACGGCGCAATGGTCGCGGCGTTAACCGAAGTGATGCCAGTCTATGTGCGTACCGTTGGTTTCTCGCTGGCCTTTAGCCTGGCGACGGCAATTTTTGGCGGCCTGACGCCGGCCATCTCTACCGCGCTGGTGAAGTTAACCGGCGATAAAAGCTCGCCCGGCTGGTGGCTGATGTGCGCAGCGTTATGTGGACTTGCCGCGACGGCGATGCTGTTTGTACGTCTGAGTCGCGGCTATATCGCGGCAGAAAATAAAGCCTGA > 1019 SeW_A1224 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 putative_metabolite_transport_protein_YjhB EDZ28436.1 11 MIAKFFPWYSEITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGPGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRLKARRESFQSTKEF gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._HI_N05-537 Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._HI_N05-537 ABFF01000014 55566..56846 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1281 In_the_1980s,_Salmonella_enterica_subsp._enterica_serovarWeltevreden_emerged_to_supplant_Enteritidis_and_Typhimurium_as_thedominant_serovar_associated_with_foodborne_nontyphoidalsalmonellosis_in_Malaysia_and_Thailand,_and_is_common_in_othercountries_of_southeast_Asia._In_the_U.S.,_Salmonella_entericasubsp._enterica_serovar_Weltevreden_was_the_most_common_serovarfound_in_seafood_mainly_imported_from_Thailand_and_Malaysia._In_theU.S.,_however,_Salmonella_enterica_subsp._enterica_serovarWeltevreden_has_not_been_isolated_from_human_clinical_cases._Whilethe_low_prevalence_of_resistance_in_Salmonella_enterica_subsp.enterica_serovar_Weltevreden_may_reflect_a_low_past_exposure_toantimicrobials,_it_also_raises_the_possibility_that_some_serovarsmay_be_less_disposed_to_acquire_resistance.Annotation_was_added_to_the_contigs_in_September_2008. NA 19-SEP-2008 Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._HI_N05-537_gcontig_1106390373128,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5PJW9_SALET.gb Samonella 156711397 J._Bacteriol._193_(14),_3556-3568_(2011) NA ABFF01000014 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1281 NA genomic_DNA NA HI_N05-537 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 465518 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Weltevreden Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA ABFF01000014.1 TTAAAATTCTTTTGTTGATTGAAAACTTTCACGACGTGCTTTTAGTCTATCCGGAATGGATAGGCCAATAATGAGTAGAATTGTTGCGGTCCAGAAAGCAACAATGAACGTTAGCGCAGCGCCTAGCCCCATTGTTATTCCAAGCCAGGTCGCCGCCATTGAATTGAATGTGCCTGATGTCGCAGCAAGATTATAAATCAGCCCGGTACCCAAACCACGAACCTCAAGAGGAAAGTAGTCGTAGAGAAATTTGGGAACCAACCCGCCAACACCTACGTTAGTCGCCATTAAACCGAATAAACATGCGCCCAGCAGTAAATAATTATCTTGCGGAATTCTGAATAACGGGAAAATGAATAAAAAGGACATGAGAAGACCAATACTGAACGTTTTCTTCAAACCAATTCTATCTGCGCACAGACCCCAAACGATATTTCCCAATACAGTGCCGAATGCCGCCGCCGTCATTAAATTAGAGACCACGCCCGTATCAAAGCCCTCTCCCGCCAAATATGTAGGCAGTAGACCAAAGATCGGCCAGTTTGCGCCGAAAATAGAGAACAGAACAATAAATACACATAATGTCAGTGGAAATTGAGCTCGATTAAATAGCCCTTTCATTGACAAAGAGAAAACTGACCAGGCACTTTGTGAATGCTTTCCGGGACCACTGAGTTTGGCTTCTTCCCACTCTTTAGATTCAGGAGCCCTGGCCCGGATGTAGATTACTAAAAGAACGGGTAGCAAACCGACAAAAAAAGCAGCACGCCAACCATACGCTTCGGCAAATGATGGCATAAAATAGGCTGCTATGATGTTACCAATACCGAAACCTGAAACCAGAAATGCGCTCGCTTTAGATTTTAAATGCTTTGGCCAACTTTCCACGGCATAAGTAGAAGCGCAAGCATACTCCCCCGCCATCCCCATACCGACAATGAAGCGACTAAGCGTCAGCATAATTACACCGGAAGCCAGGCCACTTAACCCTGTACCTACAGAATAGGCAACTATCGACCACATCATCAACGGCTTACGGCCAAATTTGTCTGCCAGCAGACCAAATAGCGCCCCGCCAAATGGTCGCCCAATAAAGGCCGCTGTGGCAAGGAATGCGCCCTCCATATCTGTCAATCCTAAGTCAGCCTTGATCAGATACATAATGTAGAAAATCAGCATAAAGTCGAAGCCGTCAAAAACGTAACCCAGCCATGCTGAAAATAAAGCATTTTTTTGTGGACGAGTTATCTCGCTATACCACGGGAAGAATTTTGCTATCAC > 1020 SeH_A0458 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 shikimate_transporter EDZ34108.1 11 MSGTYNATIRRVVVSAWIGNSIEYYDFLLYGLASALVFGPLFFPGASPLTATLSSFASFGVGFISRPLGALFFGNRGDTLGRKNTLLITLGGMGAVTFLIGCLPSYASIGALAPALLVILRFLQGFMVGGEWGGAMLMVVEYAAGKHRGRLSALSQTGGLTGQLLATGVFIVVTQLPKEALLSWGWRIPFLLSALLVLPGLYMRHRLDETPVFRAFKKQQAINHRQQREERPVVKVVREQWRSILLIIILRFAESVPFFLATVFAVSWATTQLGIASLTILYIVMFTCLLAYPMHVLFGIMSDRRGCRQVYIFGALFVAAMAFPFFWLLESRSLILMTMGYVLLINIGHNSLNAVQPSFFAGLFHPPVRYSGSSIGAQLGAVVAGGFTPFIAKALSAVYDNSWALVAGYVVLTALASAFAAKIAPETVLPHSP gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Hadar_str._RI_05P066 Salmonella_enterica_subsp._enterica_serovar_Hadar_str._RI_05P066 ABFG01000012 16486..17787 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1302 Salmonella_enterica_subsp._enterica_serovar_Hadar_is_commonly_foundas_a_cause_of_infections_in_humans_in_the_United_States_and_manyEuropean_and_African_countries._Isolates_belonging_to_this_serovarare_often_resistant_to_multiple_antimicrobials,_includingquinolones._It_has_been_associated_with_large_outbreaks_and_highrates_of_hospitalization.Annotation_was_added_to_the_contigs_in_September_2008. NA 19-SEP-2008 Salmonella_enterica_subsp._enterica_serovar_Hadar_str._RI_05P066_gcontig_1106390392532,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5PZC8_SALHA.gb Samonella 156711450 J._Bacteriol._193_(14),_3556-3568_(2011) NA ABFG01000012 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1302 NA genomic_DNA NA RI_05P066 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 465516 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Hadar Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA ABFG01000012.1 TTACGGCGAATGCGGTAACACGGTTTCCGGCGCAATCTTTGCCGCAAACGCCGAAGCCAACGCAGTCAAAACGACATAACCGGCAACCAACGCCCAACTGTTATCATAGACTGCGCTTAACGCCTTAGCGATAAACGGCGTGAATCCCCCTGCCACAACCGCCCCCAACTGAGCGCCAATTGATGAACCGCTGTAGCGTACAGGCGGATGAAACAGTCCGGCGAAAAAAGAAGGTTGCACGGCATTCAGTGAATTATGACCAATGTTAATAAGCAAAACGTAGCCCATTGTCATCAGTATGAGCGAACGGCTTTCCAGCAGCCAGAAAAAGGGAAAAGCCATTGCCGCGACAAAAAGCGCGCCGAAAATATACACCTGACGGCAGCCACGCCGATCCGACATGATGCCAAATAGCACGTGCATGGGATACGCCAGCAGACAGGTGAACATTACAATGTACAGAATAGTCAGGCTGGCAATCCCAAGCTGCGTCGTCGCCCAGGAAACCGCGAAGACGGTAGCAAGAAAAAAGGGAACGCTTTCCGCAAAACGCAGAATTATAATCAGCAAAATGCTACGCCATTGTTCTCGTACCACTTTGACCACCGGCCTTTCTTCTCTTTGCTGCCTATGATTAATGGCCTGCTGCTTTTTAAACGCACGGAAGACAGGCGTCTCATCCAGACGATGACGCATATATAATCCAGGCAACACCAAAAGCGCACTGAGCAGAAAAGGAATACGCCATCCCCACGATAACAACGCCTCCTTCGGTAATTGGGTCACGACTATAAATACGCCTGTCGCCAATAATTGTCCCGTGAGTCCTCCTGTTTGCGATAGCGCGCTTAACCGCCCCCGGTGCTTTCCAGCAGCATATTCCACGACCATCAACATGGCGCCTCCCCATTCGCCTCCAACCATAAATCCCTGTAGAAAACGCAGAATAACCAGTAAAGCAGGCGCCAGCGCGCCGATACTGGCGTAAGAAGGCAGGCAACCGATGAGAAACGTGACCGCGCCCATCCCCCCTAACGTAATTAATAACGTGTTTTTACGCCCAAGCGTATCTCCCCTGTTGCCAAAAAATAGCGCGCCCAGCGGCCGGGAGATAAATCCCACGCCGAAACTGGCAAAAGAAGATAACGTTGCAGTCAATGGGCTGGCGCCAGGAAAAAAAAGCGGGCCAAATACCAGCGCGCTTGCCAGGCCGTATAATAGAAAATCATAATATTCAATGGAGTTTCCTATCCAGGCGGAAACCACCACCCGGCGAATAGTAGCATTATACGTTCCGGACAT > 1021 SeV_A0576 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 inner_membrane_metabolite_transport_protein_YdfJ EDZ01608.1 11 MRAAVSGWLGTALEFMDFQLYSLGAALVFHEIFFPEQSAAMALILAMGTYGAGYIARIIGAFVFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGIFAPVLLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSLVAMGTNCGTLSATAIWAVMFFALEREQLIAWGWRIPFLASVVVMIFAIWLRMNLKESPVFEKVSEGEKSPALTPASENTLGAMFTSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKSIPTDALMISSVIGFITIPLLGWLSDKYGRRLPYIILNISAIILAWPMLSIVVDKTYSPGVIMAALIVIHNFAVLGLFALENITMAEIFGSRNRFTRMAISKEAGGLVAVGFGPVLAGIFCNMTDSWLPILIMLVLYSCIGLISALLMPEVRDRDLSLPEDAAEATAAEKLRHSATQTS gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Virchow_str._SL491 Salmonella_enterica_subsp._enterica_serovar_Virchow_str._SL491 ABFH02000002 514513..515853 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1341 Salmonella_enterica_subsp._enterica_serovar_Virchow_infections_havebeen_reported,_in_otherwise_healthy_children,_to_producebacteremia,_monoarthritis,_cholecystitis,_and_prevertebralabscesses._It_is_considered_to_be_an_invasive_serotype_inimmunocompetent_children_and_to_be_associated_with_a_wide_spectrumof_clinical_manifestations._Isolates_belonging_to_this_serovararedistinguished_by_resistance_to_quinolone_antimicrobials,_and_arevery_often_multiply_resistant.The_sequenced_strain_has_been_deposited_at_the_Salmonella_GeneticStock_Center_at_the_University_of_Calgary_under_the_care_of_Dr.K.E._Sanderson.The_complete_plasmids_pSL491_5_and_pSL491_3_were_deposited_inGenBank_Accession_Numbers_CP001148_and_CP001149,_respectively. NA 12-SEP-2008 Salmonella_enterica_subsp._enterica_serovar_Virchow_str._SL491_gcontig_1112707573878,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enterica_B5QBX9_SALVI.gb Samonella 199601736 J._Bacteriol._193_(14),_3556-3568_(2011) NA ABFH02000002 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1341 NA genomic_DNA NA SL491 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 465517 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Virchow Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA ABFH02000002.1 TTAACTCGTCTGGGTTGCGGAGTGGCGTAACTTCTCTGCCGCTGTCGCTTCCGCCGCATCCTCAGGCAAACTCAGGTCGCGATCTCTGACCTCCGGCATCAACAGCGCAGAAATCAGACCAATACACGAGTAGAGCACCAGCATAATTAAGATGGGCAGCCAGGAATCGGTCATGTTACAAAAGATCCCTGCGAGGACGGGGCCAAAACCGACCGCCACCAGGCCCCCTGCCTCTTTTGAAATCGCCATCCGGGTGAAGCGATTACGCGATCCGAAAATTTCCGCCATGGTGATGTTTTCCAGCGCAAATAATCCCAGCACGGCAAAGTTATGAATAACAATGAGCGCCGCCATAATTACGCCAGGGCTATACGTTTTATCTACCACAATAGACAGCATCGGCCAGGCGAGAATAATCGCGGAGATATTCAATATTATATACGGCAGCCGACGACCGTATTTATCGGACAACCACCCCAAGAGTGGGATAGTGATAAAACCAATTACGGAACTTATCATTAACGCATCGGTTGGGATAGATTTGTTAAATAATAACGTCTGAACTAAATATCCGGCAAGGAAGGTTTGAATAAGCCCAGAATTCCCCGCCTGCCCAAAACGTAAACCGGTGGCCAGCCAGAAAGATTTGCTGGTAAACATCGCGCCCAATGTATTTTCTGACGCAGGCGTTAACGCTGGCGATTTTTCGCCTTCGCTTACTTTTTCGAATACCGGACTTTCTTTCAAATTCATTCGCAGCCAGATCGCGAATATCATGACAACGACGCTCGCCAGGAAAGGAATACGCCATCCCCAGGCGATCAGTTGTTCGCGTTCAAGCGCAAAGAACATCACCGCCCAGATCGCCGTCGCGCTCAACGTACCGCAGTTGGTGCCCATCGCGACCAGCGAGGAAATGATGCCACGCTTTCCTTTCGGCGCATACTCGGCCAGCATAGTACCCGCGCCGGAAATTTCCGCCCCGGCGCCCAGCCCCTGTATAATTCGCAATGTTACCAGTAATACTGGCGCAAAAATGCCGATTTGCGCATACGTCGGCAGTACGCCAATCAGCGTGGTGCAGATCCCCATCATGGTGATGGTAATAAACAATACTTTTTTTCGTCCGATGCGGTCGCCCATTTTACCAAAAACAAAGGCGCCGATGATTCTGGCTATATAACCTGCACCATAGGTGCCCATTGCCAGAATAAGCGCCATCGCGGCAGACTGTTCCGGGAAAAATATCTCATGGAAGACCAGAGCCGCGCCTAGTGAATATAACTGAAAATCCATAAATTCAAGCGCGGTGCCTAACCAGCCAGATACGGCAGCGCGCAC > 1022 SEN3171 NA sialic_acid_transporter YP_002245237.1 11 MSTSTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQSEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVSSIILFSVGTLACGFAPGYTTMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILMTFAAAAALWFCFAGNLQNAAIVAGLGLLCAVIFISFMVQSSGKRWPTGVMLMLVVLFAFLYSWPIQALLPTYLKTELAYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQILIIPVFAIGGTNVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDDKPFSGAVPLGSGKGAFVKTKS gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 NC_011294 3388263..3389753 Thomson,N.R.,_Clayton,D.J.,_Windhorst,D.,_Vernikos,G.,_Davidson,S.,_Churcher,C.,_Quail,M.A.,_Stevens,M.,_Jones,M.A.,_Watson,M.,_Barron,A.,_Layton,A.,_Pickard,D.,_Kingsley,R.A.,_Bignell,A.,_Clark,L.,_Harris,B.,_Ormond,D.,_Abdellah,Z.,_Brooks,K.,_Cherevach,I.,_Chillingworth,T.,_Woodward,J.,_Norberczak,H.,_Lord,A.,_Arrowsmith,C.,_Jagels,K.,_Moule,S.,_Mungall,K.,_Sanders,M.,_Whitehead,S.,_Chabalgoity,J.A.,_Maskell,D.,_Humphrey,T.,_Roberts,M.,_Barrow,P.A.,_Dougan,G._and_Parkhill,J. NA 0:1491 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM933172.COMPLETENESS:_full_length. NA 25-JAN-2012 Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_enteritidis_NANT_SALEP.gb Samonella 207855516 Genome_Res._18_(10),_1624-1637_(2008) NA NC_011294 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18583645 1491 NA genomic_DNA 550537 P125109 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 550537 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Enteritidis Comparative_genome_analysis_of_Salmonella_Enteritidis_PT4_and_Salmonella_Gallinarum_287/91_provides_insights_into_evolutionary_and_host_adaptation_pathways NA NC_011294.1 TTAACTTTTCGTTTTTACAAAGGCACCTTTACCACTGCCAAGCGGTACGGCTCCGCTGAACGGTTTGTCGTCAATAGCATCGTGGGTGCGTAACGCTTCCGGACGTAGCCAACGCTGTACGCGAGACGGCATATCAAGCCCAATAAGCAGGATCACGACAAACGTCAGGCTGAAAGAGAGCGATGCCAGCGCAGTGCCCAAATCCAGACGTTGAGCGATCAGCGCTCCCAGGATCGGCGCCAGCGCGCCGCCGAGCGCGCCGACGTTATAAGTAAAGCCCAGCCCCGCCGCGCGCTGATCGGTATCGAAGTAACCGCCGATCAGTTTCGGTAGAATCCCGGCAATCCCCTGCCCCAACATCTGTTGGAAAAACAGTAGCAGACCCAGAACCCAGACGTTTGTGCCGCCAATCGCAAAGACCGGAATAATGAGGATTTGCGAGGCCAGCAGGCTACAGACATATGCTTTACGCGTTCCCAGCCAGTCGCCAAGAAAACCGCCTACGCAGCAACCAACCGCCGCGCCAAATCCGCTAAAGAACAGGACATTCGCCACCGTATGCGGATCGTAGGCCAGCTCGGTTTTCAGATAAGTGGGTAATAGCGCCTGAATCGGCCAGGAATAGAGGAAAGCAAACAGTACCACCAGCATCAGCATGACGCCAGTGGGCCAGCGTTTACCGCTGCTCTGCACCATAAAGCTGATAAAGATAACCGCGCACAGTAGTCCCAGCCCCGCCACAATCGCAGCATTTTGTAGGTTACCGGCAAAACAGAACCACAGCGCAGCGGCGGCGGCGAAAGTCATTAAAATGTTGATGATGCGATGCTCGCCCCGATAAAGAATGTCGACCATCGTGCGTACCGGCGCTTTACCCGCGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGAATGTTTTTCCGCAGCCAGAGAGCGAAGATAATTGGCAAAATGCCAATGAAAAACAGCGCGCGCCAGCCCCAGACAGGCACCACCAGGCTGTACACCTGCGCGGCAACGACCGCGCCGACGGAGAAGCCGGAAATCAGAAAACCGCTGGCTTTATTGCGTAAATGTTTTGGCCAGCTTTCAATCACATAGGTCGCGCTGGAACCATATTCGCCCGCCATGCCCATACCAATCACCAGTCGGGCGATGAACATGGTGGTGTAACCGGGCGCAAACCCGCATGCCAGGGTTCCCACCGAAAACAGAATGATGCTGCTGACCATCGCCAGACGACGCCCATAGCGATCGCCCATCGCGCCCAGTAATAACCCGCCGAACCAGCGAGAGATAAAAGCCGCAGAAATCAGGCTTGCCGCCTGTACCGTCGTCAGCCCAAATTCGCTTTGTACCTCAGTCAGTACAAGAGCAATCAACACAAAATCAAAACCATCAAGCAGATATCCCAGCCAGGCAGCGGAAAATGCCCGCCACTGCGCCCGGTTGAGATGGCGATACCACGGGATGTTCTGGGTAGAAGTACTCAT > 1023 SG0216 NA hypothetical_protein YP_002225350.1 11 MSGTYNATIRRVVVSAWIGNSIEYYDFLLYGLASALVFGPLFFPGASPLTATLSSFASFGVGFISRPLGALFFGNRGDTLGRKNTLLITLGGMGAVTFLIGCLPSYASIGALAPALLVILRFLQGFMVGGEWGGAMLMVVEYAAGKHRGRLSALSQTGGLTGQLLATGVFIVVTQLPQEALLSWGWRIPFLLSALLVLPGLYMRHRLDETPVFRAFKKQQAINHRQQREERPVVKVVREQWRSILLIIILRFAESVPFFLATVFAVSWATTQLGIASLTILYIVMFTCLLAYPMHVLFGIMSDRRGCRQVYIFGALFVAAMAFPFFWLLESRSLILMTMGYVLLINIGHNSLNAVQPSFFAGLFHPPVRYSGSSIGAQLGAVVAGGFTPFIAKALSAVYDNSWTLVAGYVVLTALASAFAAKIAPETVLPHSP gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 NC_011274 249871..251172 Thomson,N.R.,_Clayton,D.J.,_Windhorst,D.,_Vernikos,G.,_Davidson,S.,_Churcher,C.,_Quail,M.A.,_Stevens,M.,_Jones,M.A.,_Watson,M.,_Barron,A.,_Layton,A.,_Pickard,D.,_Kingsley,R.A.,_Bignell,A.,_Clark,L.,_Harris,B.,_Ormond,D.,_Abdellah,Z.,_Brooks,K.,_Cherevach,I.,_Chillingworth,T.,_Woodward,J.,_Norberczak,H.,_Lord,A.,_Arrowsmith,C.,_Jagels,K.,_Moule,S.,_Mungall,K.,_Sanders,M.,_Whitehead,S.,_Chabalgoity,J.A.,_Maskell,D.,_Humphrey,T.,_Roberts,M.,_Barrow,P.A.,_Dougan,G._and_Parkhill,J. NA 0:1302 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM933173.COMPLETENESS:_full_length. NA 25-JAN-2012 Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_gallinarum_B5RHF0_SALG2.gb Samonella 205351346 Genome_Res._18_(10),_1624-1637_(2008) NA NC_011274 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 18583645 1302 NA genomic_DNA NA 287/91 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 550538 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Gallinarum Comparative_genome_analysis_of_Salmonella_Enteritidis_PT4_and_Salmonella_Gallinarum_287/91_provides_insights_into_evolutionary_and_host_adaptation_pathways NA NC_011274.1 ATGTCCGGAACGTATAATGCTACTATTCGCCGGGTGGTGGTTTCCGCCTGGATAGGAAACTCCATTGAATATTATGATTTTCTATTATACGGCCTGGCAAGCGCGCTGGTATTTGGCCCGCTTTTTTTTCCTGGCGCCAGCCCATTGACTGCAACGTTATCTTCTTTTGCCAGTTTCGGCGTGGGATTTATCTCCCGGCCGCTGGGCGCGCTATTTTTTGGCAACAGGGGAGATACGCTTGGGCGTAAAAACACGTTATTAATCACGTTAGGGGGGATGGGCGCGGTCACGTTTCTCATCGGTTGCCTGCCTTCTTACGCCAGTATTGGCGCGCTGGCGCCTGCTTTACTGGTTATTCTGCGTTTTCTGCAGGGATTTATGGTTGGAGGCGAATGGGGAGGCGCCATGTTGATGGTCGTGGAATATGCTGCTGGAAAGCACCGGGGGCGGTTAAGCGCGCTATCGCAAACAGGAGGACTCACGGGACAATTATTGGCGACAGGCGTATTTATAGTCGTGACCCAATTACCGCAGGAGGCGTTGTTATCGTGGGGATGGCGTATTCCTTTTCTGCTCAGTGCGCTTTTGGTGTTGCCGGGATTATATATGCGTCATCGTCTGGATGAGACACCTGTCTTCCGTGCGTTTAAAAAGCAGCAGGCCATTAATCATAGGCAGCAAAGAGAAGAAAGGCCGGTGGTCAAAGTAGTACGAGAACAATGGCGCAGCATTTTGCTGATTATAATTCTGCGTTTTGCGGAAAGCGTTCCCTTTTTTCTTGCTACCGTCTTCGCGGTTTCCTGGGCGACGACGCAGCTTGGGATTGCCAGCCTGACTATTCTGTACATTGTAATGTTCACCTGTCTGCTGGCGTATCCCATGCACGTGCTATTTGGCATCATGTCGGATCGGCGTGGCTGCCGTCAGGTGTATATTTTCGGCGCGCTTTTTGTCGCGGCAATGGCTTTTCCCTTTTTCTGGCTGCTGGAAAGCCGTTCGCTCATACTGATGACAATGGGCTACGTTTTGCTTATTAACATTGGTCATAATTCACTGAATGCCGTGCAACCTTCTTTTTTCGCCGGACTGTTTCATCCGCCTGTACGCTACAGCGGTTCATCAATTGGCGCTCAGTTGGGGGCGGTTGTGGCAGGGGGATTCACGCCGTTTATCGCTAAAGCGTTAAGCGCAGTCTATGATAACAGTTGGACTTTGGTTGCCGGTTATGTCGTTTTGACTGCGCTGGCTTCGGCGTTTGCGGCAAAGATTGCGCCGGAAACCGTGTTACCGCATTCGCCGTAA > 1024 SPAB_03855 KEGG:_cal:orf19.3526_1.8e-54_ITR2;_myo-inositol_transporter_K08140;_COG:_COG0477_Permeases_of_the_major_facilitator_superfamily;_Psort_location:_endoplasmic_reticulum,_score:_9 hypothetical_protein YP_001590019.1 11 MPDNKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFITDEFQITAHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLIISRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYSGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFHDAERVLLRLRDTSAEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGILLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAIGMGILGTMMHIGIHSPSAQYFAIAMLLMFIIGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNNLGNANTFWVYAGLNVLFILLTLWLVPETKHVSLEHIERNLMKGRKLREIGAHD gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 NC_010102 3213698..3215092 McClelland,M.,_Sanderson,E.K.,_Porwollik,S.,_Spieth,J.,_Clifton,W.S.,_Fulton,R.,_Cordes,M.,_Wollam,A.,_Shah,N.,_Pepin,K.,_Bhonagiri,V.,_Nash,W.,_Johnson,M.,_Thiruvilangam,P._and_Wilson,R. NA 0:1395 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000886.The_bacterium_Salmonella_Paratyphi_B_is_host-specialized,_for_itgrows_well_and_causes_disease_only_in_humans,_whereas_most_strainsof_Salmonella_can_grow_in_the_gut_of_almost_all_animals,_bothdomesticated_and_wild._Humans_usually_acquire_Salmonella_ParatyphiB_by_the_ingestion_of_water_or_of_food_that_has_been_contaminatedthrough_fecal_contact_with_humans._Paratyphi_B_is_quite_diverseand_human_infection_is_sometimes_not_associated_with_human-to-human_system_infection_but_rather_associated_with_food_borneinfection.The_specific_strain_of_S._Paratyphi_that_was_sequenced_was_isolatedfrom_the_stool_of_a_female_in_Penang_Malaysia,_and_was_obtainedfrom_Kwai-Lin_Thong._It_can_be_obtained_from_the_Salmonella_GeneticStock_Center_as_SGSC4150_(www.ucalgary.ca/kesander)._The_genome_was_sequenced_to_8X_coverage,_using_plasmidand_fosmid_libraries,_and_was_manually_finished._Automatedannotation_has_been_performed_and_manual_annotation_will_continuein_the_labs_of_Michael_McClelland_and_Kenneth_Sanderson._TheNational_Institute_of_Allergy_and_Infectious_Diseases_(NIAID),National_Institutes_of_Health_(NIH)_has_funded_this_project.Coding_sequences_below_are_predicted_using_GeneMark_v3.3_andGlimmer2_v2.13.Intergenic_regions_not_spanned_by_GeneMark_andGlimmer2_were_blasted_against_NCBIs_non-redundant_(NR)_databaseand_predictions_generated_based_on_protein_alignments._RNA_geneswere_determined_using_tRNAscan-SE_1.23_or_Rfam_v8.0._This_sequencewas_finished_as_follows_unless_otherwise_noted:_all_regions_weredouble_stranded,_sequenced_with_an_alternate_chemistries_or_coveredby_high_quality_data(i.e.,_phred_quality_>=30);an_attempt_was_madeto_resolve_all_sequencing_problems,_such_as_compressions_andrepeats;_all_regions_were_covered_by_sequence_from_more_than_onem13_subclone.COMPLETENESS:_full_length. NA 06-OCT-2011 Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_paratyphi_A9N4N6_SALPB.gb Samonella 161612313 Submitted_(13-NOV-2007)_Genetics,_Genome_Sequencing_Center,_4444_Forest_Park_Parkway,_St._Louis,_MO_63108,_USA NA NC_010102 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1395 NA genomic_DNA NA SGSC4150;_SPB7 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 1016998 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B Direct_Submission NA NC_010102.1 ATGCCTGACAATAAAAAACAAGGGCGTTCCAACAAGGCCATGACATTTTTTGTCTGCTTTCTTGCAGCCCTGGCAGGATTACTTTTTGGCCTGGATATCGGCGTTATCGCCGGTGCTTTACCCTTCATTACCGACGAGTTTCAGATTACCGCACACACTCAGGAATGGGTGGTCAGCTCCATGATGTTTGGCGCGGCCGTCGGCGCTGTCGGCAGCGGCTGGCTCTCCTTTAAGCTGGGTCGTAAAAAAAGCCTGATGATCGGCGCTATCCTGTTCGTCGCCGGTTCGCTGTTCTCCGCTGCGGCGCCTAACGTTGAAGTCCTGATTATTTCTCGCGTGCTGCTGGGTCTGGCCGTCGGCGTCGCTTCCTACACTGCACCGTTGTACCTGTCAGAGATCGCGCCGGAAAAAATTCGCGGCAGTATGATCTCAATGTACCAGCTCATGATCACCATCGGGATTCTGGGCGCTTATCTGTCCGACACCGCGTTCAGCTACAGCGGCGCATGGCGCTGGATGCTCGGCGTGATCATCATCCCGGCCATTCTGCTGCTGATCGGCGTCTTCTTCCTGCCGGACAGCCCGCGCTGGTTTGCGGCGAAACGCCGTTTCCATGATGCTGAACGCGTCCTGTTGCGCCTGCGTGACACCAGTGCGGAAGCAAAACGTGAGCTCGATGAAATTCGCGAAAGTTTGCAGGTTAAACAGAGCGGTTGGGCGCTGTTCAAAGAGAACAGCAACTTCCGCCGCGCCGTGTTTCTTGGCATTTTGTTGCAGGTCATGCAGCAATTTACCGGGATGAACGTCATCATGTATTACGCGCCGAAAATCTTCGAACTGGCGGGGTACACGAATACCACGGAGCAGATGTGGGGCACCGTTATTGTTGGTCTGACTAACGTGCTGGCAACCTTCATCGCTATCGGCCTGGTTGACCGCTGGGGCCGCAAGCCGACCCTGACGCTGGGCTTCCTGGTCATGGCGATTGGTATGGGGATTCTGGGTACGATGATGCACATCGGCATCCATTCGCCGTCTGCGCAATACTTCGCTATCGCTATGCTGCTGATGTTCATCATTGGATTTGCGATGAGCGCTGGTCCGCTGATTTGGGTACTGTGCTCCGAAATCCAGCCGCTGAAAGGCCGCGATTTCGGCATCACCTGCTCCACCGCGACCAACTGGATCGCCAATATGATCGTCGGCGCAACGTTCCTGACCATGCTGAACAATCTGGGTAACGCCAACACTTTCTGGGTCTACGCTGGCCTGAACGTACTGTTTATCCTGCTGACCCTGTGGCTGGTGCCGGAAACCAAACACGTTTCGCTGGAACACATTGAACGTAACCTGATGAAAGGTCGTAAACTGCGCGAAATCGGCGCCCACGACTAA > 1025 SPC_2617 NA sialic_acid_transporter YP_002638160.1 11 MIAKFFPWYSEITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGPGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRLKARRESFQSTKEF gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 NC_012125 2652361..2653641 Liu,W.Q.,_Feng,Y.,_Wang,Y.,_Zou,Q.H.,_Chen,F.,_Guo,J.T.,_Peng,Y.H.,_Jin,Y.,_Li,Y.G.,_Hu,S.N.,_Johnston,R.N.,_Liu,G.R._and_Liu,S.L. NA 0:1281 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000857.COMPLETENESS:_full_length. NA 20-NOV-2011 Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_paratyphi_C0Q874_SALPC.gb Samonella 224581838 PLoS_ONE_4_(2),_E4510_(2009) NA NC_012125 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19229335 1281 NA genomic_DNA NA RKS4594 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 476213 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C Salmonella_paratyphi_C:_genetic_divergence_from_Salmonella_choleraesuis_and_pathogenic_convergence_with_Salmonella_typhi NA NC_012125.1 TTAAAATTCTTTTGTTGATTGAAAACTTTCACGACGTGCTTTTAGTCTATCCGGAATGGATAGGCCAATAATGAGTAGAATTGTTGCGGTCCAGAAAGCAACAATGAACGTTAGCGCAGCGCCTAGCCCCATTGTTATTCCAAGCCAGGTCGCCGCCATTGAATTGAATGTGCCTGATGTCGCAGCAAGATTATAAATCAGCCCGGTACCCAAACCACGAACCTCAAGAGGAAAGTAGTCGTAGAGAAATTTGGGAACCAACCCGCCAACACCTACGTTAGTCGCCATTAAACCGAATAAACATGCGCCCAGCAGTAAATAATTATCTTGCGGAATTCTGAATAACGGGAAAATGAATAAAAAGGACATGAGAAGACCAATGCTGAACGTTTTCTTCAAACCAATTCTATCTGCGCACAGACCCCAAACGATATTTCCCAATACAGTGCCGAATGCCGCCGCCGTCATTAAATTAGAGACCACACCCGTATCAAAGCCCTCTCCCGCCAAATATGTAGGCAGTAGACCAAAGATCGGCCAGTTTGCGCCGAAAATAGAGAACAGAACAATAAATACACATAATGTCAGTGGAAATTGAGCTCGATTAAATAGCCCTTTCATTGACAAAGAGAAAACTGACCAGGCACTTTGTGAATGCTTTCCGGGACCACTGAGTTTAGCTTCTTCCCACTCTTTAGATTCAGGAGCCCTGGCCCGGATGTAGATTACTAAAAGAACGGGTAGCAAACCGACAAAAAAAGCAGCACGCCAACCATACGCTTCGGCAAATGACGGCATAAAATAGGCTGCTATGATGTTACCAATACCGAAACCTGAAACCAGAAATGCGCTCGCTTTAGATTTTAAATGCTTTGGCCAACTTTCCACGGCATAAGTAGAAGCGCAAGCATACTCCCCCGCCATCCCCATACCGACAATGAAGCGACTAAGCGTCAGCATAATTACACCGGAAGCCAGGCCACTTAACCCTGTACCTACAGAATAGGCAACTATCGACCACATCATCAACGGCTTACGGCCAAATTTGTCTGCCAGCAGACCAAATAGCGCCCCGCCAAATGGTCGCCCAATAAAGGCCGCTGTGGCAAGGAATGCGCCCTCCATATCTGTCAATCCTAAGTCAGCCTTGATCAGATACATAATGTAGAAAATCAGCATAAAGTCGAAGCCGTCAAAAACGTAACCCAGCCATGCTGAAAATAAAGCATTTTTTTGTGGACGAGTTATCTCGCTATACCACGGGAAGAATTTTGCTATCAC > 1026 SPA2883 similar_to_Salmonella_typhi_CT18_L-arabinose_isomerase L-arabinose_isomerase YP_152038.1 11 MVSINDSALTPRSLRDTRRMNMFVSVSAAVAGLLFGLDIGVIAGALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSLGSAFASSVEVLIGARVILGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAQKGRHIEAEEVLRMLRDTSEKARDELNEIRESLKLKQGGWALFKANRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFIGITFWLIPETKNVTLEHIERKLMAGEKLRNIGV gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 NC_006511 2993435..2994850 McClelland,M.,_Sanderson,K.E.,_Clifton,S.W.,_Latreille,P.,_Porwollik,S.,_Sabo,A.,_Meyer,R.,_Bieri,T.,_Ozersky,P.,_McLellan,M.,_Harkins,C.R.,_Wang,C.,_Nguyen,C.,_Berghoff,A.,_Elliott,G.,_Kohlberg,S.,_Strong,C.,_Du,F.,_Carter,J.,_Kremizki,C.,_Layman,D.,_Leonard,S.,_Sun,H.,_Fulton,L.,_Nash,W.,_Miner,T.,_Minx,P.,_Delehaunty,K.,_Fronick,C.,_Magrini,V.,_Nhan,M.,_Warren,W.,_Florea,L.,_Spieth,J._and_Wilson,R.K. NA 0:1416 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000026.COMPLETENESS:_full_length. NA 23-JAN-2012 Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_paratyphi_Q5PEP5_SALPA.gb Samonella 56412276 Nat._Genet._36_(12),_1268-1274_(2004) NA NC_006511 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 15531882 1416 NA genomic_DNA NA ATCC_9150 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 295319 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella Comparison_of_genome_degradation_in_Paratyphi_A_and_Typhi,_human-restricted_serovars_of_Salmonella_enterica_that_cause_typhoid NA NC_006511.1 TTACACGCCAATATTTCTTAGCTTCTCGCCCGCCATTAGCTTGCGTTCGATATGCTCCAGGGTGACATTTTTGGTTTCCGGAATCAGCCAGAAAGTGATGCCGATAAAAGCGATATTCAGCGCGGTGTAGAGCCAGAATGTACCTGCCGCGCCAATGCTGTCCAACAGTGTCAGGAATGTCGCGCCGATGATCATGTTCGATACCCAGTTTGTCGTGGTTGAACAGGTAATGCCAAAATCACGGCATTTCAGCGGCTGGATTTCCGAACACAGTATCCACACCACCGGAGCGGCGCTCATCGCGTAACCGGCGATACACATCATCGTCATCCCAACGGAAAGCCAGGAGAGACCGCTTGATGCCGTACCGTTATCAAACTGCATCAGGCAGTAGCCCAACACCAATGTCCCTAACGCCATTACGCTGAAACCGATTTTTAACGCCGGTTTACGCCCGGCCTTATCGACCGTAAAGACGGCTATAAAAGTCGCGAACATAAAGGTCAGTCCGACCACCAGCGTAGCGATCATTTGCTGTTCCGTGGTGGTAAAGCCGGCCATTTTAAAAATGCGCGGCGCATAATACATAATGATGTTCATGCCGGTGAACTGCTGCATTGCCTGTAGCAACATACCGAGGAACACGGCGCGGCGAACATTGCGGTTAGCTTTAAATAATGCCCACCCGCCCTGCTTGAGTTTGAGGCTTTCCCGAATCTCATTCAGTTCATCACGGGCTTTTTCCGAGGTATCGCGCAGCATACGCAGCACCTCTTCCGCTTCAATATGGCGACCTTTTTGCGCCAGCCAACGCGGACTATTCGGCAGGAATACCACCAGAATAATGAGCAACACCGCAGGCAGCGCCAGCACGCCCAACATCGCGCGCCAGTTGCCGCTGTAGCTGAATGCCGTATCGGATAAAAAAGCCAGCACAATGCCTAACGTCACCATCAGTTGATACATACTGATCATTTTGCCGCGAACATTTTCACTTGCCATTTCAGAGAGATAAAGCGGCGCGGTATAGGAGGCAATCCCTACTGCTACGCCCAGTATCACGCGGGCGCCAATCAATACTTCCACGCTGGAAGCAAACGCCGACCCCAGCGAGCCGAGTACAAACAAAATCGCGCCAGCCATCAGGCTATACTTACGCCCCAGCCGGAATGAAAGCCAGCCGTTAAATAATGCGCCAATTGCCGCGCCAAGCATCATACTGCTGACGACCCACTCCTGCAGCCGGCTGGTCAGTACGAAATGGTCGGTAATAAAAGGCAGCGCCCCGGCGATAACGCCGATATCCAGACCAAATAACAGTCCCGCAACCGCTGCAGAAACCGAAACAAACATATTCATACGTCGTGTGTCGCGAAGCGAACGCGGCGTTAAAGCAGAGTCATTAATAGAGACCAT > 1027 SeSA_A1609 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 inner_membrane_metabolite_transport_protein_YdfJ YP_002114523.1 11 MRAAVSGWLGTALEFMDFQLYSLGAALVFHEIFFPEQSAAMALILAMGTYGAGYIARIIGAFVFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGIFAPVLLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSLVAMGTNCGTLSATAIWAVMFFALEREQLIAWGWRIPFLASVVVMIFAIWLRMNLKESPVFEKVSEGEKSPALTPASENTLGAMFTSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKSIPTDALMISSVIGFITIPLLGWLSDKYGRRLPYIILNISAIILAWPMLSIVVDKTYSPGVIMAALIVIHNFAVLGLFALENITMAEIFGSRNRFTRMAISKEAGGLVAVGFGPVLAGIFCNMTDSWLPILIMLVLYSCIGLISALLMPEVRDRDLSLPEDAAEATAAEKLRHSATQTS gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 NC_011094 1552047..1553387 Fricke,W.F.,_Mammel,M.K.,_McDermott,P.F.,_Tartera,C.,_White,D.G.,_Leclerc,J.E.,_Ravel,J._and_Cebula,T.A. NA 0:1341 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001127.The_sequenced_strain_has_been_deposited_at_the_Salmonella_GeneticStock_Center_at_the_University_of_Calgary_under_the_care_of_Dr.K.E._Sanderson.COMPLETENESS:_full_length. NA 26-JAN-2012 Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_schwarzengrund_B4TVH4_SALSV.gb Samonella 194733902 J._Bacteriol._193_(14),_3556-3568_(2011) NA NC_011094 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 21602358 1341 NA genomic_DNA NA CVM19633 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 439843 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella Comparative_genomics_of_28_Salmonella_enterica_isolates:_evidence_for_CRISPR-mediated_adaptive_sublineage_evolution NA NC_011094.1 GTGCGCGCTGCCGTATCTGGCTGGTTAGGCACTGCGCTTGAATTTATGGATTTTCAGTTATATTCACTAGGCGCGGCTCTGGTCTTCCATGAGATATTTTTCCCGGAACAGTCTGCCGCGATGGCGCTTATTCTGGCAATGGGCACCTATGGTGCAGGTTATATAGCCAGAATTATCGGCGCCTTTGTTTTTGGTAAAATGGGCGACCGCATCGGACGAAAAAAAGTATTGTTTATTACCATCACCATGATGGGGATCTGCACCACGCTGATTGGCGTACTGCCGACGTATGCGCAAATCGGCATTTTTGCGCCAGTATTACTGGTGACATTGCGAATTATACAGGGGCTGGGCGCCGGGGCGGAAATTTCCGGCGCGGGTACCATGCTGGCCGAGTATGCGCCGAAAGGAAAGCGTGGCATCATTTCCTCGCTGGTCGCGATGGGCACCAACTGCGGTACGTTGAGCGCGACGGCGATCTGGGCGGTGATGTTCTTTGCGCTTGAACGCGAACAACTGATCGCCTGGGGATGGCGTATTCCTTTCCTGGCGAGCGTCGTTGTCATGATATTCGCGATCTGGCTGCGAATGAATCTGAAAGAAAGCCCGGTATTCGAAAAAGTAAGCGAAGGCGAAAAATCGCCAGCGTTAACGCCTGCGTCAGAAAATACATTGGGCGCGATGTTTACCAGCAAATCTTTCTGGCTGGCCACCGGTTTACGTTTTGGACAAGCTGGGAATTCGGGGCTTATTCAAACCTTCCTTGCCGGATATTTAGTTCAGACGTTATTATTTAACAAATCTATCCCAACCGATGCGTTAATGATAAGTTCCGTAATTGGTTTTATCACTATCCCACTATTAGGGTGGTTGTCCGATAAATACGGTCGTCGGCTGCCGTATATAATATTGAATATCTCCGCGATTATTCTCGCCTGGCCGATGCTGTCTATTGTGGTAGATAAAACGTATAGCCCTGGCGTAATTATGGCGGCGCTCATTGTTATTCATAACTTTGCCGTGCTGGGATTATTTGCGCTGGAAAACATCACCATGGCGGAAATTTTCGGATCGCGTAATCGCTTCACCCGGATGGCGATTTCAAAAGAGGCAGGAGGCCTGGTGGCGGTTGGCTTTGGCCCCGTCCTCGCAGGAATCTTTTGTAACATGACCGATTCCTGGCTGCCCATCTTAATTATGCTGGTGCTCTACTCGTGTATTGGTCTGATTTCTGCGCTGTTGATGCCGGAGGTCAGAGATCGCGACCTGAGTTTGCCTGAGGATGCGGCGGAAGCGACAGCGGCAGAGAAGTTACGCCACTCCGCAACCCAGACGAGTTAA > 1028 STMMW_07471 pfam_scan;Pfam:PF00083;_E()=3.1E-60;score=203.6;query_23-398;description=Sugar_tr;_tmhmm;_query_1-435 citrate-proton_symporter CBG23756.1 11 MAQHTPATSRAGTFGAILRVTSGNFLEQFDFFLFGFYATYIARTFFPAESEFASLMLTFAVFGSGFLMRPVGAIVLGAYIDRIGRRKGLMVTLAIMGCGTLLIALVPGYQTIGLAAPALVLLGRLLQGFSAGVELGGVSVYLSEIATPGNKGFYTSWQSASQQVAIVVAALIGYSLNITLGHDAISEWGWRIPFFIGCMIIPLIFVLRRSLQETEAFLQRKHRPDTREIFATIAKNWRIITAGTLLVAMTTTTFYFITVYTPTYGRTVLNLSARDSLIVTMLVGVSNFIWLPIGGAISDRIGRRAVLMGITLLALITTWPVMQWLTAAPDFTRMTLVLLWFSFFFGMYNGAMVAALTEVMPVYVRTVGFSLAFSLATAIFGGLTPAISTALVKLTGDKSSPGWWLMCAALCGLAATAMLFVRLSRGYIAAENKA gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 FN424405 790182..791486 Kingsley,R.A.,_Msefula,C.L.,_Thomson,N.R.,_Kariuki,S.,_Holt,K.E.,_Gordon,M.A.,_Harris,D.,_Clarke,L.,_Whitehead,S.,_Sangal,V.,_Marsh,K.,_Achtman,M.,_Molyneux,M.E.,_Cormican,M.,_Parkhill,J.,_MacLennan,C.A.,_Heyderman,R.S._and_Dougan,G. NA 0:1305 NA NA 09-DEC-2009 Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_typhimurium_C9XBK3_SALTD.gb Samonella 261245233 Genome_Res._19_(12),_2279-2287_(2009) NA FN424405 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19901036 1305 NA genomic_DNA NA D23580 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 568708 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Typhimurium Epidemic_multiple_drug_resistant_Salmonella_Typhimurium_causing_invasive_disease_in_sub-Saharan_Africa_have_a_distinct_genotype NA FN424405.1 TCAGGCTTTATTTTCTGCCGCGATATAGCCGCGACTCAGACGTACAAACAGCATCGCCGTCGCGGCAAGTCCACATAACGCTGCGCACATCAGCCACCAGCCGGGCGAGCTTTTATCGCCGGTTAACTTTACCAGCGCGGTAGAGATGGCCGGCGTCAGGCCGCCAAAAATCGCCGTCGCCAGGCTAAAGGCCAGCGAGAAACCAACGGTACGCACATAGACTGGCATCACTTCGGTTAACGCCGCGACCATTGCGCCGTTATACATGCCAAAAAAGAAAGAGAACCACAGCAGTACCAGCGTCATGCGGGTAAAGTCGGGCGCGGCGGTCAGCCACTGCATGACGGGCCAGGTGGTGATCAGCGCCAGCAACGTAATGCCCATTAACACAGCGCGACGGCCAATCCGGTCGGAAATCGCGCCGCCAATGGGTAACCAGATAAAATTGGACACCCCCACTAACATGGTGACGATCAAACTGTCCCGCGCGCTGAGATTAAGCACGGTTCTGCCATAGGTCGGCGTATAAACGGTGATAAAATAAAACGTTGTGGTGGTCATCGCCACCAGCAGCGTTCCGGCTGTAATAATGCGCCAGTTTTTGGCGATAGTTGCAAAAATTTCCCTGGTGTCGGGGCGATGCTTGCGTTGTAAAAACGCTTCTGTTTCTTGTAATGAACGACGTAAAACAAAAATCAGCGGAATGATCATACAGCCGATAAAGAACGGAATTCGCCAGCCCCACTCCGATATCGCGTCGTGTCCCAGCGTGATATTCAGGCTATAACCAATCAACGCGGCAACAACGATCGCGACCTGCTGACTGGCGGATTGCCAGCTGGTATAAAACCCTTTATTGCCTGGCGTTGCGATTTCGGACAGATAGACCGAGACGCCGCCTAACTCAACGCCCGCAGAAAATCCTTGTAATAACCGGCCCAACAGCACCAACGCAGGCGCTGCCAGGCCGATCGTTTGGTAGCCGGGGACGAGGGCGATGAGCAACGTACCGCAGCCCATAATCGCCAGTGTCACCATCAGCCCTTTACGGCGTCCGATTCTGTCAATATAGGCGCCAAGCACAATCGCGCCGACGGGGCGCATTAAAAAACCGGAGCCAAAGACGGCAAAGGTCAACATTAATGAGGCAAATTCGCTTTCCGCCGGAAAAAACGTTCTGGCGATATAGGTGGCGTAAAATCCGAACAAGAAAAAATCAAACTGTTCAAGGAAATTGCCGCTTGTCACGCGCAGTATTGCGCCGAACGTGCCGGCGCGCGATGTTGCAGGTGTGTGTTGTGCCAT > 1029 STMMW_11411 pfam_scan;Pfam:PF00083;_E()=6.6E-40;score=136.6;query_20-410;description=Sugar_tr;_tmhmm;_query_1-427 putative_transporter CBG24154.1 11 MIAKFFPWYSEITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGPGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLTGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRLKARRESFQSTKEF gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 FN424405 1217609..1218889 Kingsley,R.A.,_Msefula,C.L.,_Thomson,N.R.,_Kariuki,S.,_Holt,K.E.,_Gordon,M.A.,_Harris,D.,_Clarke,L.,_Whitehead,S.,_Sangal,V.,_Marsh,K.,_Achtman,M.,_Molyneux,M.E.,_Cormican,M.,_Parkhill,J.,_MacLennan,C.A.,_Heyderman,R.S._and_Dougan,G. NA 0:1281 NA NA 09-DEC-2009 Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_typhimurium_C9XEH1_SALTD.gb Samonella 261245233 Genome_Res._19_(12),_2279-2287_(2009) NA FN424405 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19901036 1281 NA genomic_DNA NA D23580 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 568708 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Typhimurium Epidemic_multiple_drug_resistant_Salmonella_Typhimurium_causing_invasive_disease_in_sub-Saharan_Africa_have_a_distinct_genotype NA FN424405.1 GTGATAGCAAAATTCTTCCCGTGGTATAGCGAGATAACTCGTCCACAAAAAAATGCTTTATTTTCAGCATGGCTGGGTTACGTTTTTGACGGCTTCGACTTTATGCTGATTTTCTACATTATGTATCTGATCAAGGCTGACTTAGGATTGACAGATATGGAGGGCGCATTCCTTGCCACAGCGGCCTTTATTGGGCGACCATTTGGCGGGGCGCTATTTGGTCTGCTGGCAGACAAATTTGGCCGTAAGCCGTTGATGATGTGGTCGATAGTTGCCTATTCTGTAGGTACAGGGTTAAGTGGCCTGGCTTCCGGTGTAATTATGCTGACGCTTAGTCGCTTCATTGTCGGTATGGGGATGGCGGGGGAGTATGCTTGCGCTTCTACTTATGCCGTGGAAAGTTGGCCAAAGCATTTAAAATCTAAAGCGAGCGCATTTCTGGTTTCAGGTTTCGGTATTGGTAACATCATAGCAGCCTATTTTATGCCGTCATTTGCCGAAGCGTATGGTTGGCGTGCTGCTTTTTTTGTCGGTTTGCTACCCGTTCTTTTAGTAATCTACATCCGGGCCAGGGCTCCTGAATCTAAAGAGTGGGAAGAAGCTAAACTCAGTGGTCCCGGAAAGCATTCACAAAGTGCCTGGTCAGTTTTCTCTTTGTCAATGAAAGGGCTATTTAATCGAGCTCAATTTCCACTGACATTATGTGTATTTATTGTTCTGTTCTCTATTTTCGGCGCAAACTGGCCGATCTTTGGTCTACTGCCTACATATTTGACGGGAGAGGGCTTTGATACGGGCGTGGTCTCTAATTTAATGACGGCGGCGGCATTCGGCACTGTATTGGGAAATATCGTTTGGGGTCTGTGCGCAGATAGAATTGGTTTGAAGAAAACGTTCAGCATTGGTCTTCTCATGTCCTTTTTATTCATTTTCCCGTTATTCAGAATTCCGCAAGATAATTATTTACTGCTGGGCGCATGTTTATTCGGTTTAATGGCGACTAACGTAGGTGTTGGCGGGTTGGTTCCCAAATTTCTCTACGACTACTTTCCTCTTGAGGTTCGTGGTTTGGGTACCGGGCTGATTTATAATCTTGCTGCGACATCAGGCACATTCAATTCAATGGCGGCGACCTGGCTTGGAATAACAATGGGGCTAGGCGCTGCGCTAACGTTCATTGTTGCTTTCTGGACCGCAACAATTCTACTCATTATTGGCCTATCCATTCCGGATAGACTAAAAGCACGTCGTGAAAGTTTTCAATCAACAAAAGAATTTTAA > 1030 STM14_0804 citrate-proton_symporter_(citrate_transporter)._(SW:CIT1_SALTY) citrate-proton_symporter ACY87308.1 11 MAQHTPATSRAGTFGAILRVTSGNFLEQFDFFLFGFYATYIARTFFPAESEFASLMLTFAVFGSGFLMRPVGAIVLGAYIDRIGRRKGLMVTLAIMGCGTLLIALVPGYQTIGLAAPALVLLGRLLQGFSAGVELGGVSVYLSEIATPGNKGFYTSWQSASQQVAIVVAALIGYSLNITLGHDAISEWGWRIPFFIGCMIIPLIFVLRRSLQETEAFLQRKHRPDTREIFATIAKNWRIITAGTLLVAMTTTTFYFITVYTPTYGRTVLNLSARDSLIVTMLVGVSNFIWLPIGGAISDRIGRRAVLMGITLLALITTWPVMQWLTAAPDFTRMTLVLLWFSFFFGMYNGAMVAALTEVMPVYVRTVGFSLAFSLATAIFGGLTPAISTALVKLTGDKSSPGWWLMCAALCGLAATAMLFVRLSRGYIAAENKA gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S CP001363 751868..753172 Jarvik,T.,_Smillie,C.,_Groisman,E.A._and_Ochman,H. NA 0:1305 The_bacteria_and_DNA_are_available_from:_Eduardo_Groisman_(8210McDonnell_Pediatric_Research_Building,_Department_of_MolecularMicrobiology,_Washington_University_School_of_Medicine,_660_SouthEuclid_Avenue_Box_8230,_St._Louis,_MO_63110-1093). NA 13-NOV-2009 Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_typhimurium_D0ZQA0_SALT1.gb Samonella 267991652 J._Bacteriol._192_(2),_560-567_(2010) NA CP001363 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19897643 1305 NA genomic_DNA NA 14028S NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 588858 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Typhimurium Short-Term_Signatures_of_Evolutionary_Change_in_the_Salmonella_enterica_Serovar_Typhimurium_14028_Genome NA CP001363.1 TCAGGCTTTATTTTCTGCCGCGATATAGCCGCGACTCAGACGTACAAACAGCATCGCCGTCGCGGCAAGTCCACATAACGCTGCGCACATCAGCCACCAGCCGGGCGAGCTTTTATCGCCGGTTAACTTTACCAGCGCGGTAGAGATGGCCGGCGTCAGGCCGCCAAAAATCGCCGTCGCCAGGCTAAAGGCCAGCGAGAAACCAACGGTACGCACATAGACTGGCATCACTTCGGTTAACGCCGCGACCATTGCGCCGTTATACATGCCAAAAAAGAAAGAGAACCACAGCAGTACCAGCGTCATGCGGGTAAAGTCGGGCGCGGCGGTCAGCCACTGCATGACGGGCCAGGTGGTGATCAGCGCCAGCAACGTAATGCCCATTAACACAGCGCGACGGCCAATCCGGTCGGAAATCGCGCCGCCAATGGGTAACCAGATAAAATTGGACACCCCCACTAACATGGTGACGATCAAACTGTCCCGCGCGCTGAGATTAAGCACGGTTCTGCCATAGGTCGGCGTATAAACGGTGATAAAATAAAACGTTGTGGTGGTCATCGCCACCAGCAGCGTTCCGGCTGTAATAATGCGCCAGTTTTTGGCGATAGTTGCAAAAATTTCCCTGGTGTCGGGGCGATGCTTGCGTTGTAAAAACGCTTCTGTTTCTTGTAATGAACGACGTAAAACAAAAATCAGCGGAATGATCATACAGCCGATAAAGAACGGAATTCGCCAGCCCCACTCCGATATCGCGTCGTGTCCCAGCGTGATATTCAGGCTATAACCAATCAACGCGGCAACAACGATCGCGACCTGCTGACTGGCGGATTGCCAGCTGGTATAAAACCCTTTATTGCCTGGCGTTGCGATTTCGGACAGATAGACCGAGACGCCGCCTAACTCAACGCCCGCAGAAAATCCTTGTAATAACCGGCCCAACAGCACCAACGCAGGCGCTGCCAGGCCGATCGTTTGGTAGCCGGGGACGAGGGCGATGAGCAACGTACCGCAGCCCATAATCGCCAGTGTCACCATCAGCCCTTTACGGCGTCCGATTCTGTCAATATAGGCGCCAAGCACAATCGCGCCGACGGGGCGCATTAAAAAACCGGAGCCAAAGACGGCAAAGGTCAACATTAATGAGGCAAATTCGCTTTCCGCCGGAAAAAACGTTCTGGCGATATAGGTGGCGTAAAATCCGAACAAGAAAAAATCAAACTGTTCAAGGAAATTGCCGCTTGTCACGCGCAGTATTGCGCCGAACGTGCCGGCGCGCGATGTTGCAGGTGTGTGTTGTGCCAT > 1031 STM14_5310 similar_to_Escherichia_coli_xylose-proton_symport_(AAC77001.1) sugar_transporter ACY91645.1 11 MSQRSKYNSAYVYVLCCIAALAGLMFGYSTAVITGVVLPLQQYYQLTPTETGWAVSSIVIGCIIGALVGGKIADKLGRKPALLIIAIIFIASSLGAAMSESFMIFSLSRIVCGFAVGMAGTASTMYMSELAPAEIRGKALGIYNISVVSGQVIVFIVNYLIAKGMPADVLVSQGWKTMLFAQVVPSIAMLAITLFLPESPAWCARNNRSEARSIKVLTRIYSGLTATDVAAIFDSMKETVRSQDNVAGGERTNLKSSPVLRYILLVGCCIAVLQQFTGVNVMNYYAPLVLQNSSTEVVMFQTIFIAVCNVVGSFIGMILFDRYGRIPIMKIGTIGSIVGLLIASYGLYTHDTGYITIFGILFFMLLFAVSWSVGAWVLISEVFPEKIKGFGMGLAVSLMWIANFLISLLFPVINDNAWLQETFGGAFSMWIFVVFNLVCYVFISRYVPETKGVPLTEIERLAENKLREIQGKRRDVIA gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S CP001363 4674147..4675583 Jarvik,T.,_Smillie,C.,_Groisman,E.A._and_Ochman,H. NA 0:1437 The_bacteria_and_DNA_are_available_from:_Eduardo_Groisman_(8210McDonnell_Pediatric_Research_Building,_Department_of_MolecularMicrobiology,_Washington_University_School_of_Medicine,_660_SouthEuclid_Avenue_Box_8230,_St._Louis,_MO_63110-1093). NA 13-NOV-2009 Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_typhimurium_D0ZT75_SALT1.gb Samonella 267991652 J._Bacteriol._192_(2),_560-567_(2010) NA CP001363 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19897643 1437 NA genomic_DNA NA 14028S NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 588858 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Typhimurium Short-Term_Signatures_of_Evolutionary_Change_in_the_Salmonella_enterica_Serovar_Typhimurium_14028_Genome NA CP001363.1 ATGTCTCAGAGAAGTAAGTACAATTCGGCCTATGTGTACGTCCTGTGTTGTATTGCGGCGCTGGCTGGATTGATGTTTGGTTATTCAACGGCGGTGATTACCGGAGTGGTATTGCCTTTACAGCAGTATTACCAACTGACGCCAACCGAGACCGGATGGGCCGTTTCCAGTATCGTGATTGGTTGTATCATCGGCGCGCTGGTCGGTGGAAAAATTGCCGATAAACTGGGGCGTAAACCTGCGCTTCTGATCATTGCGATCATTTTTATCGCTTCTTCCTTAGGGGCGGCGATGAGTGAATCGTTCATGATCTTCTCCCTTTCCCGCATTGTGTGTGGTTTTGCGGTTGGGATGGCCGGAACGGCATCCACCATGTATATGTCTGAACTGGCGCCTGCTGAAATTCGCGGCAAAGCGCTGGGCATTTACAATATCTCCGTGGTATCTGGCCAGGTTATCGTGTTTATAGTCAACTATCTGATAGCAAAAGGAATGCCTGCTGATGTGCTGGTTTCCCAGGGCTGGAAGACTATGCTTTTTGCCCAAGTGGTACCCTCCATTGCGATGTTAGCGATTACGCTTTTCCTACCCGAATCACCGGCATGGTGCGCCCGTAACAACCGCAGCGAAGCTCGTTCGATAAAGGTGCTTACCCGGATCTACAGTGGATTAACGGCCACAGATGTGGCCGCTATTTTTGACAGCATGAAAGAAACCGTACGTTCACAGGACAACGTCGCCGGGGGAGAACGCACCAACCTGAAAAGCTCGCCGGTGCTCCGCTATATTCTGTTGGTTGGATGCTGTATCGCCGTTTTGCAACAGTTCACAGGCGTTAACGTAATGAACTATTATGCGCCGCTGGTGTTGCAGAACAGCAGTACCGAAGTGGTTATGTTCCAGACCATTTTTATCGCGGTATGTAATGTGGTGGGCAGTTTTATCGGCATGATCCTGTTCGACCGCTATGGCCGTATACCGATTATGAAAATTGGTACCATCGGCTCAATTGTCGGCCTGTTGATCGCGTCATACGGTTTGTACACCCACGATACAGGCTACATTACCATCTTTGGCATCCTGTTTTTTATGCTGCTGTTTGCCGTCAGCTGGAGCGTTGGCGCATGGGTACTGATTTCTGAGGTTTTCCCTGAAAAGATAAAAGGTTTTGGGATGGGGCTGGCGGTGAGTCTGATGTGGATAGCCAACTTCCTCATCTCACTGTTGTTCCCGGTCATAAATGATAACGCCTGGCTGCAGGAGACCTTCGGCGGCGCTTTCTCGATGTGGATTTTTGTCGTCTTTAATTTGGTCTGCTATGTCTTTATTTCTCGTTATGTGCCGGAAACAAAAGGGGTGCCGCTAACAGAAATTGAACGGCTGGCCGAGAACAAGCTGCGTGAAATTCAGGGGAAACGTCGCGATGTAATAGCCTGA > 1032 SL1344_4351 NA putative_sugar_transport_protein CBW20437.1 11 MSTSDSCYNTGYILRICAIAALGGILFGYDTAVISGAIGSLTSYFHLSPAETGWAVSCVVVGCVIGSFSAGYLSKRFGRKKSLMVSALLFTISAVGTSLSYTFTHFVIYRIIGGLAVGLAATVSPMYMSEVSPKNMRGRALSMQQFAIVFGQILIFYVNYKIASIAADTWLIELGWRYMFAAGIIPCILFCILVFLIPESPRWMMMIGREEETLKILTKISNEEHARHLLADIKTSLQNDQLNAHQKLNYRDGNVRFILILGCMIAMLQQVTGVNVMMYYAPIVLKDVTGSAQEALFQTIWIGVIQLIGSIIGAMIMDKMGRLSLMRKGTIGSIIGLLLTSWALYSQATGYFALFGMLFFMIFYALSWGVGAWVLISEIFPNRMRSQGMSISVGFMWMANFLVSQFFPMINENPYLLSHFHGAFPMWIFAICCIFSYFFICRYLPETKGISLEKMESVVLAKRRKKLQPIQTERYSD gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 FQ312003 4680006..4681439 Dougan,G.,_Barrow,P.,_Achtman,M.,_Parkhill,J._and_Thomson,N.R. NA 0:1434 Data_release_policy_http://www.sanger.ac.uk/legal/#t_2_DNA_source:unknown. NA 23-JUL-2010 Salmonella_enterica_subsp._enterica_serovar_Typhimurium_SL1344_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_typhimurium_E1WAV3_SALTS.gb Samonella 301156631 Unpublished NA FQ312003 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1434 NA genomic_DNA NA SL1344 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 216597 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Typhimurium The_genome_sequence_of_Salmonella_enterica_subsp._enterica_serovar_Typhimurium_SL1344 NA FQ312003.1 TTAATCAGAATAACGTTCGGTTTGAATTGGCTGCAGTTTTTTTCTGCGTTTTGCTAACACTACGCTCTCCATTTTCTCCAGCGAAATGCCTTTTGTTTCCGGCAGGTAACGGCAGATAAAGAAGTAACTGAAGATGCAGCAGATGGCAAATATCCACATTGGAAATGCGCCGTGGAAATGCGAAAGTAAATACGGGTTTTCATTAATCATCGGGAAGAATTGCGAAACTAAAAAGTTTGCCATCCACATAAATCCGACCGAAATACTCATTCCCTGCGACCTCATCCGGTTAGGGAATATTTCAGAAATAAGCACCCATGCGCCCACGCCCCAGGAAAGCGCGTAGAAAATCATAAAGAACAGCATACCGAATAGCGCGAAATAACCGGTTGCCTGGCTGTACAGCGCCCATGAGGTGAGCAACAAGCCGATGATGCTGCCGATAGTGCCTTTACGCATCAGCGACAAACGCCCCATCTTATCCATAATCATTGCGCCAATAATGGAACCGATAAGCTGAATCACGCCGATCCAGATTGTCTGGAACAGGGCCTCCTGGGCGCTACCGGTCACATCCTTAAGGACGATTGGCGCGTAATACATCATGACGTTAACCCCTGTTACCTGTTGCAGCATAGCGATCATGCAGCCCAGGATCAGGATGAAACGCACGTTCCCGTCGCGGTAATTGAGTTTTTGATGGGCGTTTAGTTGGTCATTTTGCAGTGAGGTTTTTATATCGGCAAGAAGATGTCTGGCATGTTCTTCGTTGGATATTTTGGTCAGTATTTTTAGCGTCTCCTCCTCGCGACCAATCATCATCATCCAGCGGGGAGATTCCGGGATTAAAAAGACTAAAATACAGAACAAAATGCAGGGAATAATACCCGCAGCAAACATATAGCGCCAGCCAAGTTCAATGAGCCAGGTATCCGCTGCAATCGATGCTATTTTGTAGTTAACGTAGAAGATCAGAATCTGACCGAAAACGATAGCGAACTGCTGCATACTTAATGCTCTGCCGCGCATGTTTTTCGGTGAGACTTCAGACATATACATCGGTGATACTGTTGCCGCCAGGCCGACTGCCAGTCCACCGATAATGCGATAAATCACAAAATGGGTGAACGTGTAGGAGAGGGAGGTGCCCACTGCGGAAATAGTGAATAACAGCGCTGAAACCATCAATGATTTCTTGCGTCCAAAACGTTTGGATAAATATCCGGCGCTAAACGAACCAATAACGCACCCCACCACAACGCAGGAAACCGCCCAGCCGGTCTCAGCAGGAGATAGATGAAAGTAGCTGGTCAGTGAACCAATCGCACCTGAAATAACAGCAGTATCGTAGCCAAATAATATTCCGCCCAGTGCGGCAATCGCGCAGATGCGTAATATGTAACCCGTATTATAACAACTATCTGATGTGGACAT > 1033 SL1344_4227 NA putative_amino_acid_permease CBW20313.1 11 MLKRKKIKPITLGDVTIIDDGKLRKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEENFLEWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLSCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVIMGSIALFALAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLIAGLTPTLAAWLVESSQDLMMPAYYLMVIAVIGLITGISMKETANRPLKGATPAASDIQEAKEILGEHYDNIEQKIDDIDQEIAELQVKRSRLVQQHPRIDE gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 FQ312003 4552262..4553764 Dougan,G.,_Barrow,P.,_Achtman,M.,_Parkhill,J._and_Thomson,N.R. NA 0:1503 Data_release_policy_http://www.sanger.ac.uk/legal/#t_2_DNA_source:unknown. NA 23-JUL-2010 Salmonella_enterica_subsp._enterica_serovar_Typhimurium_SL1344_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_typhimurium_E1WEY0_SALTS.gb Samonella 301156631 Unpublished NA FQ312003 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1503 NA genomic_DNA NA SL1344 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 216597 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Typhimurium The_genome_sequence_of_Salmonella_enterica_subsp._enterica_serovar_Typhimurium_SL1344 NA FQ312003.1 ATGCTGAAAAGGAAAAAAATAAAACCGATTACACTGGGCGATGTGACCATCATTGATGATGGTAAACTTCGCAAAGCGATTACCGCCGCCTCGCTGGGCAACGCGATGGAGTGGTTTGATTTTGGTGTTTATGGATTTGTTGCCTACGCGTTGGGTAAAGTCTTTTTCCCCGGCGCCGATCCCAGCGTCCAGATGATTGCCGCGCTGGCCACGTTTTCCGTTCCCTTCCTGATTCGTCCGCTCGGCGGGTTATTCTTTGGTATGCTCGGCGATAAATACGGGCGCCAGAAGATCCTGGCGATCACGATTGTGATTATGTCGATCAGTACCTTCTGTATCGGGTTAATCCCCTCTTACGCGACGATCGGTATCTGGGCGCCAATACTGTTGTTGCTGTGTAAAATGGCGCAGGGCTTCTCGGTTGGCGGGGAATATACCGGCGCGTCGATCTTTGTCGCGGAATATTCGCCGGATCGTAAACGCGGATTTATGGGAAGCTGGCTGGATTTTGGTTCTATCGCCGGATTCGTGCTGGGCGCGGGCGTGGTGGTCTTGATCTCGACGATTGTCGGCGAGGAGAATTTCCTTGAGTGGGGCTGGCGTATTCCGTTCTTTATCGCCCTGCCATTGGGGATTATTGGTCTCTACTTACGCCATGCGCTGGAGGAGACGCCAGCGTTTCAGCAGCACGTGGATAAACTGGAGCAGGGCGACCGCGAAGGGTTGCAGGATGGGCCGAAAGTCTCCTTTAAAGAGATTGCCACCAAACACTGGCGTAGCCTGTTGTCATGTATCGGTCTGGTGATTGCCACCAACGTGACCTACTACATGCTGCTCACCTACATGCCGAGCTACCTGTCGCATAACCTGCACTATTCTGAAGATCACGGCGTGTTGATTATCATCGCCATTATGATCGGGATGCTGTTTGTGCAGCCGGTGATGGGGCTGCTGAGCGACCGTTTCGGTCGACGTCCATTTGTGATTATGGGCAGCATTGCGCTGTTCGCGCTGGCGATCCCGGCCTTCATCCTGATTAACAGTAACGTTATTGGCCTGATTTTTGCAGGTTTGTTGATGCTGGCGGTGATTCTGAACTGCTTTACCGGGGTGATGGCCTCGACATTGCCGGCGATGTTTCCGACGCATATTCGTTATAGCGCGCTGGCGGCGGCTTTTAATATCTCTGTATTGATTGCCGGTCTGACGCCAACGCTGGCGGCCTGGCTGGTGGAAAGCTCGCAGGATCTGATGATGCCGGCGTATTATTTGATGGTCATCGCGGTGATAGGCTTGATTACCGGTATTTCCATGAAAGAGACGGCCAATCGTCCGTTAAAAGGCGCAACGCCAGCGGCGTCGGACATCCAGGAAGCGAAGGAAATTCTGGGCGAGCATTACGATAATATTGAGCAGAAAATCGACGACATCGATCAGGAAATTGCGGAGCTGCAGGTCAAACGTTCGCGTCTGGTACAGCAACATCCGCGTATCGATGAATAA > 1034 t3003 galactose_transporter;_corresponds_to_STY3244_from_Accession_AL513382:_Salmonella_typhi_CT18 galactose-proton_symport NP_806695.1 11 MPDNKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFITDEFQITAHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLIISRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYSGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFHDAERVLLRLRDTSAEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGILLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAIGMGILGTMMHIGIHSPSAQYFAIAMLLMFIIGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNNLGNANTFWVYAGLNVLFILLTLWLVPETKHVSLEHIERNLMKGRKLREIGAHD gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 NC_004631 3094519..3095913 Deng,W.,_Liou,S.R.,_Plunkett,G._III,_Mayhew,G.F.,_Rose,D.J.,_Burland,V.,_Kodoyianni,V.,_Schwartz,D.C._and_Blattner,F.R. NA 0:1395 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE014613.COMPLETENESS:_full_length. NA 20-JAN-2012 Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_typhi_Q8XEV6_SALTI.gb Samonella 29140543 J._Bacteriol._185_(7),_2330-2337_(2003) NA NC_004631 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 12644504 1395 NA genomic_DNA NA Ty2 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 209261 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Typhi Comparative_genomics_of_Salmonella_enterica_serovar_Typhi_strains_Ty2_and_CT18 NA NC_004631.1 ATGCCTGACAATAAAAAACAAGGGCGTTCCAACAAGGCCATGACATTTTTTGTCTGCTTTCTTGCAGCCCTGGCAGGATTACTTTTTGGCCTGGATATCGGCGTTATCGCCGGTGCTTTACCCTTCATTACCGACGAGTTTCAGATTACCGCACACACTCAGGAATGGGTGGTCAGCTCCATGATGTTTGGCGCGGCCGTCGGCGCTGTCGGCAGCGGCTGGCTCTCCTTTAAGCTGGGTCGTAAAAAAAGCCTGATGATCGGCGCTATCCTGTTCGTCGCCGGTTCGCTGTTCTCCGCTGCGGCGCCTAACGTTGAAGTCCTGATTATTTCTCGCGTGCTGCTGGGTCTGGCCGTCGGCGTCGCTTCCTACACTGCACCGTTGTACCTGTCCGAGATCGCGCCGGAAAAAATTCGCGGCAGTATGATCTCAATGTACCAACTCATGATCACCATCGGGATTCTGGGCGCTTATCTGTCCGATACCGCGTTCAGCTACAGCGGCGCATGGCGCTGGATGCTCGGCGTGATCATCATCCCGGCCATTCTGCTGCTGATCGGCGTCTTCTTCCTGCCGGACAGCCCGCGCTGGTTTGCGGCGAAACGCCGTTTCCATGATGCTGAACGCGTCCTGTTGCGCCTGCGTGACACCAGTGCGGAAGCAAAACGTGAGCTCGATGAAATTCGCGAAAGTTTGCAGGTTAAACAGAGCGGTTGGGCGCTGTTCAAAGAGAACAGCAACTTCCGCCGCGCCGTGTTTCTTGGCATTTTGTTGCAGGTAATGCAGCAATTTACCGGGATGAACGTCATCATGTATTACGCGCCGAAAATCTTCGAACTGGCGGGGTACACGAATACCACGGAGCAGATGTGGGGCACCGTTATTGTTGGTCTGACTAACGTGCTGGCAACCTTCATCGCTATCGGCCTGGTTGACCGCTGGGGCCGCAAGCCGACCCTGACGCTGGGCTTCCTGGTCATGGCGATTGGTATGGGGATTCTGGGTACGATGATGCACATCGGCATCCATTCACCGTCTGCGCAATACTTCGCTATCGCTATGCTGCTGATGTTCATCATTGGATTTGCGATGAGCGCTGGTCCGCTGATTTGGGTACTGTGCTCCGAAATCCAGCCGCTCAAAGGCCGCGATTTCGGCATCACCTGCTCCACCGCGACCAACTGGATCGCCAATATGATCGTCGGCGCAACGTTCCTGACCATGCTGAACAATCTGGGTAACGCCAACACCTTCTGGGTCTACGCTGGCCTGAACGTGCTGTTTATCCTGCTGACCCTGTGGCTGGTGCCGGAAACCAAACACGTTTCGCTGGAACACATTGAACGTAACCTGATGAAAGGTCGTAAACTGCGCGAAATCGGCGCCCACGACTAA > 1035 t0257 corresponds_to_STY2846_from_Accession_AL513382:_Salmonella_typhi_CT18 hypothetical_protein NP_804134.1 11 MRVLIPFTVLFLSGCSHLANDHWSGQDKAQHFMASAMLSAAGNEYARHQGVSPDRSAAIGLMFSLSLGASKELWDSRPEGSGWSWKDFVWDVAGATTGYAIWQMARY gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 NC_004631 293573..294874 Deng,W.,_Liou,S.R.,_Plunkett,G._III,_Mayhew,G.F.,_Rose,D.J.,_Burland,V.,_Kodoyianni,V.,_Schwartz,D.C._and_Blattner,F.R. NA 1298:>1302 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE014613.COMPLETENESS:_full_length. NA 20-JAN-2012 Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_typhi_Q8Z4J3_SALTI.gb Samonella 29140543 J._Bacteriol._185_(7),_2330-2337_(2003) NA NC_004631 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 12644504 1302 NA genomic_DNA NA Ty2 NA Salmonella_enterica_ser._choleraesuis NA complement NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 209261 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Typhi Comparative_genomics_of_Salmonella_enterica_serovar_Typhi_strains_Ty2_and_CT18 NA NC_004631.1 ATGGCAGAAATTATTCAGCGTATAGATAAAAACAACGCTGAGGCTCCGGAGATGCGGCGACACATATGGGCTATCGTGGGGGCCTCTTCCGGAAACTTAGTGGAATGGTTTGATTTCTACGTCTACTCTTTCTGCTCGCTCTATTTTGCACATATCTTCTTTCCTTCTAGTAATACCACTACTCAGCTTTTGCAAACGGCAGGCGTCTTTGCCGCCGGTTTTTTAATGCGGTCTATCGGTGGTTGGCTGTTTGGACGCATTGCCGATCGACGCGGGCGCAAAGCCTCAATGTTGATTTCGGTGTGCATGATGTGCATGGGGTCGCTGGTGATTGCCTGCTTACCTGGTTACGATACCATCGGCACCTGGGCACCGGCGCTGCTACTTATTGCAAGGTTATTTCAGGGGCTCTCGGTAGGGGGAGAGTATGGGACCAGCGCGACATATATGAGTGAAGTTGCGCTTGAAGGTCGTAAGGGATTTTTCGCGTCGTTTCAGTACGTTACGCTTATCGGTGGCCAACTACTGGCATTGCTGGTCGTTGTGATTTTGCAGCAGGTTCTGGAGGATGCTGAGCTTCGTGCCTGGGGATGGCGTATTCCCTTTGCGCTGGGCGCCGTGCTGGCGGTTGTGGCGTTATGGCTACGTCGCCAGCTGGATGAAACCTCGAAGCATGAGACTCGCGCATTAAAAGAAGCCGGTTCGTTGAAAGGTTTGTGGCGTAATCGCAAAGCCTTTTTGATGGTGCTTGGTTTCACCGCGGCAGGCTCGCTGTGCTTTTATACCTTCACCACCTATATGCAGAAATATCTGGTAAATACAGCAGGTATGCATGCCAATGTCGCCAGCGGCATTATGACGGCTGCGCTGTGTGTTTTCATGTTGGTGCAGCCGTTATTCGGCGCGTTATCCGATAAGATTGGCAGGCGCACCTCTATGCTATGTTTTGGCGCACTCGCGACGCTTTTCACCGTTCCAATTCTCTCCGCGTTGCAGAATGTGACGTCGCCTTATGCCGCATTTGCTTTAGTGATGTGCGCGCTATTGATTGTGAGTTTCTATACCTCGATTAGCGGGATCCTGAAAGCGGAGATGTTTCCGGCGCAGGTTCGCGCCCTGGGCGTCGGTTTATCTTACGCGGTAGCAAACGCGTTATTTGGCGGCTCTGCGGAATATGTCGCGCTGTCGCTAAAATCTGTCGGTATGGAGAGTTCGTTCTTCTGGTATGTTACCGCGATGGCCGTTCTGGCTTTCCTGGTTTCGTTGATGTTGCACCGTAAAGGAAAGGGCTTACGCCTTTAG > 1036 t1428 corresponds_to_STY1554_from_Accession_AL513382:_Salmonella_typhi_CT18 membrane_transport_protein NP_805222.1 11 MTQIKHERSTQDLVRAAVSGWLGTALEFMDFQLYSLGAALVFHEIFFPEQSAAMALILAMGTYGAGYIARIIGAFVFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGIFAPVLLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSLVAMGTNCGTLSATAIWAVMFFALEREQLIAWGWRIPFLASVVVMIFAIWLRMNLKESPVFEKVSEGEKSPALTPASENTLGAMFTSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKSIPTDALMISSVIGFITIPLLGWLSDKYGRRLPYIILNISAIILAWPMLSIVVDKTYSPGVIMAALIVIHNFAVLGLFALENITMAEIFGSRNRFTRMAISKEAGGLVAVGFGPVLAGIFCNMTDSWLPILIMLVLYSCIGLISALLMPEVRDRDLSLPEDAAEATAAEKLRHSATQTS gamma_subgroup Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 NC_004631 1472823..1474202 Deng,W.,_Liou,S.R.,_Plunkett,G._III,_Mayhew,G.F.,_Rose,D.J.,_Burland,V.,_Kodoyianni,V.,_Schwartz,D.C._and_Blattner,F.R. NA 0:1380 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE014613.COMPLETENESS:_full_length. NA 20-JAN-2012 Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Salmonella_typhi_Q8Z6Z5_SALTI.gb Samonella 29140543 J._Bacteriol._185_(7),_2330-2337_(2003) NA NC_004631 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 12644504 1380 NA genomic_DNA NA Ty2 NA Salmonella_enterica_ser._choleraesuis NA forward NA NA NA NA NA NA Salmonella_enterica_subsp._enterica_(ex_Kauffmann_and_Edwards_1952)_Le_Minor_and_Popoff_1987 NA NA NA prokaryotes NA 209261 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Salmonella,_Salmonella_enterica_subsp._enterica_serovar_Typhi Comparative_genomics_of_Salmonella_enterica_serovar_Typhi_strains_Ty2_and_CT18 NA NC_004631.1 ATGACACAAATAAAGCATGAACGATCGACTCAGGATTTAGTGCGCGCTGCCGTATCTGGCTGGTTAGGCACCGCGCTTGAATTTATGGATTTTCAGTTATATTCACTAGGCGCGGCTCTGGTCTTCCATGAGATATTTTTCCCGGAACAGTCTGCCGCGATGGCGCTTATTCTGGCAATGGGCACCTATGGTGCAGGTTATATAGCCAGAATTATCGGCGCCTTTGTTTTTGGTAAAATGGGCGACCGCATCGGACGAAAAAAAGTATTGTTTATTACTATCACCATGATGGGGATCTGCACCACGCTGATTGGCGTACTGCCGACGTATGCGCAAATCGGCATTTTTGCGCCAGTATTACTGGTAACATTGCGAATTATACAGGGGCTGGGCGCCGGGGCGGAAATTTCCGGCGCGGGTACCATGCTGGCCGAGTATGCGCCGAAAGGAAAGCGTGGCATCATTTCCTCGCTGGTCGCGATGGGCACCAATTGCGGTACGTTGAGCGCGACGGCGATCTGGGCGGTGATGTTCTTTGCGCTTGAACGCGAACAACTGATCGCCTGGGGATGGCGTATTCCTTTCCTGGCGAGCGTCGTTGTTATGATATTCGCGATCTGGCTGCGAATGAATCTGAAAGAAAGTCCGGTATTCGAAAAAGTAAGCGAAGGCGAAAAATCGCCAGCGTTAACGCCTGCGTCAGAAAATACATTGGGCGCGATGTTTACCAGCAAATCTTTCTGGCTGGCCACCGGTTTACGTTTTGGGCAGGCGGGGAATTCCGGGCTTATTCAAACTTTCCTTGCCGGATATTTAGTTCAGACGTTATTATTTAACAAATCTATCCCAACCGATGCGTTAATGATAAGTTCCGTAATTGGTTTTATCACTATCCCACTCTTGGGGTGGTTGTCCGATAAATACGGTCGTCGGCTACCGTATATAATATTGAATATCTCCGCGATTATTCTCGCCTGGCCGATGTTGTCTATTGTGGTAGATAAAACGTATAGCCCTGGCGTAATTATGGCGGCGCTCATTGTTATTCATAACTTTGCCGTGCTGGGATTATTTGCGCTGGAAAACATCACCATGGCGGAAATTTTCGGATCGCGTAATCGCTTCACCCGGATGGCGATTTCAAAAGAGGCAGGAGGCCTGGTGGCGGTTGGCTTTGGCCCCGTCCTCGCAGGGATCTTTTGTAACATGACCGATTCCTGGCTGCCCATCTTAATTATGCTGGTGCTCTACTCGTGTATTGGTCTGATTTCTGCGCTGTTGATGCCGGAGGTCAGAGATCGCGACCTGAGTTTGCCTGAGGATGCGGCGGAAGCGACAGCGGCAGAGAAGTTACGCCACTCCGCAACCCAGACGAGTTAA > 1037 Sked_13740 PFAM:_Major_Facilitator_Superfamily;_TIGRFAM:_drug_resistance_transporter,_EmrB/QacA_subfamily arabinose_efflux_permease_family_protein YP_003314148.1 11 MVSPTSPRQRWLLLVTVSAGLLLITLDNSILYTALPTLTEEIGASPSQGLWIINAYPLVMAGLLLGAGTLGDRVGHQRMFLVGLVIFAAASLVAAFAPAPEVLIAARAVLAVGAASMMPATLALIRIAFTIERERNVAIAVWGSVALIGSALGPIVGGALLEHFWWGSVFLVNVPVAVIALLVVLKVAPHNDPDPSKTWDLLSSVQVMVAMVGLVFALKEVTKPGPSWPVVAAALVAAALGAITFTRRQSRLDHPLLDFSIFRNRAFAAGVLAAAFAMFAVGGIQLVTSQRYQLVEGLSPLEAGALVAAVAVGALPTGLLGGAFLHVVGLRTLIGGGLTVSTVGVVVTVTSFQSGLGWMIAGLALTGMGLGAAMSVASTAIVGNVPPRRAGMASSLEEVSYEFGSLTAVAILGSLLTAIYTSTITLPPGALAEAGDSLSGALSTSASDPGILEAAFTAFDHGYSVVMVVVAAVLATGAALTTALLWRYGPGSASSSYDSDH high_GC_Gram+ Sanguibacter_keddieii_DSM_10542 Sanguibacter_keddieii_DSM_10542 NC_013521 1547356..1548861 Ivanova,N.,_Sikorski,J.,_Sims,D.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Lapidus,A.,_Copeland,A.,_Glavina_Del_Rio,T.,_Nolan,M.,_Chen,F.,_Lucas,S.,_Tice,H.,_Cheng,J.F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Pati,A.,_Mavromatis,K.,_Chen,A.,_Palaniappan,K.,_Dhaeseleer,P.,_Chain,P.,_Bristow,J.,_Eisen,J.A.,_Markowitz,V.,_Hugenholtz,P.,_Goker,M.,_Pukall,R.,_Klenk,H.P._and_Kyrpides,N.C. NA 0:1506 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001819.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4082383Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_Cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Sanguibacter_keddieii_ST-74,_DSM_10542Culture_Collection_ID_::_DSM_10542,_ATCC_51767,_CECT_4540,_NCFB_3025GOLD_Stamp_ID_::_Gc01087Funding_Program_::_DOE-GEBA_2007Assembly_Method_::_Newbler_version_1.1.02.15,_PhrapSequencing_Depth_::_10.4x_Sanger;_20x_454Gene_Calling_Method_::_GeneMark_4.6b,_GenePRIMPIsolation_Site_::_Blood_of_dairy_cowsCollection_Date_::_before_1995Isolation_Country_::_SpainHost_Name_::_CowHost_Health_::_HealthyBody_Sample_Site_::_BloodOxygen_Requirement_::_FacultativeCell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileTemperature_Optimum_::_25-30CGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Host##Metadata-END##COMPLETENESS:_full_length. NA 11-OCT-2011 Sanguibacter_keddieii_DSM_10542_chromosome,_complete_genome. NA Sanguinibacteraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sanguibacter_keddieii_D1BF18_SANKS.gb Sanguinibacter 269793358 Stand_Genomic_Sci_1_(2),_110-118_(2009) NA NC_013521 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 21304646 1506 NA genomic_DNA NA DSM_10542 NA Sanguinibacter_keddieii NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Micrococcineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 446469 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Micrococcineae,_Sanguibacteraceae,_Sanguibacter Complete_genome_sequence_of_Sanguibacter_keddieii_type_strain_(ST-74) NA NC_013521.1 TCAGTGGTCGGAGTCGTAGGACGAGGAGGCGCTCCCCGGACCGTAGCGCCAGAGCAGCGCGGTGGTCAGGGCCGCCCCGGTCGCCAGGACTGCCGCCACGACGACCATGACGACGGAGTACCCGTGGTCGAACGCCGTGAAGGCCGCCTCTAGGATGCCAGGGTCCGAGGCGCTCGTGGACAGCGCCCCGGAGAGGGAGTCTCCGGCCTCGGCCAGCGCTCCGGGCGGCAGGGTGATGGTGCTGGTGTAGATCGCGGTGAGCAGCGAACCGAGGATCGCGACCGCGGTGAGGCTGCCGAACTCGTAGGAGACCTCTTCGAGCGACGAGGCCATGCCGGCGCGGCGCGGCGGCACGTTGCCGACGATCGCGGTCGAGGCGACGGACATCGCCGCGCCGAGCCCCATGCCGGTCAGCGCGAGACCGGCGATCATCCAGCCCAGGCCCGACTGGAAGCTGGTGACGGTCACGACCACCCCGACGGTGCTGACGGTCAGCCCGCCGCCGATGAGGGTCCTGAGCCCGACCACGTGCAAGAACGCACCGCCGAGCAGCCCGGTGGGCAGGGCGCCGACCGCCACGGCCGCGACCAGCGCGCCGGCCTCGAGCGGGCTGAGGCCTTCGACCAGCTGGTAGCGCTGGCTGGTGACGAGCTGGATGCCGCCCACGGCGAACATCGCAAACGCTGCCGCGAGGACACCGGCGGCGAAGGCGCGGTTCCGGAAGATCGAGAAGTCGAGCAGGGGGTGGTCCAGGCGTGACTGGCGACGGGTGAAGGTGATCGCTCCGAGTGCTGCGGCCACGAGGGCTGCCGCGACCACGGGCCACGACGGACCGGGCTTGGTGACCTCCTTGAGGGCGAAGACGAGCCCGACCATCGCGACCATCACCTGGACGGAAGACAGCAGGTCCCACGTCTTCGAGGGGTCGGGGTCGTTGTGCGGGGCGACCTTGAGCACGACGAGCAACGCGATGACCGCGACGGGGACGTTGACGAGGAACACCGAGCCCCACCAGAAGTGCTCGAGGAGGGCTCCTCCGACGATCGGTCCCAGGGCGCTGCCGATCAGCGCGACGGATCCCCATACGGCGATGGCGACGTTGCGCTCGCGCTCGATCGTGAACGCGATGCGGATCAGCGCGAGCGTGGCCGGCATCATCGACGCCGCACCGACCGCCAGCACGGCGCGTGCGGCGATGAGGACCTCGGGGGCGGGTGCGAATGCCGCGACCAGGGAGGCCGCCGCGAAGATGACCAGCCCGACGAGGAACATGCGCTGGTGCCCGACACGGTCGCCGAGGGTCCCTGCTCCGAGCAGCAGGCCTGCCATGACGAGGGGGTAGGCGTTGATGATCCACAGGCCCTGCGACGGCGACGCGCCGATCTCCTCGGTGAGGGTGGGCAGCGCGGTGTAGAGGATCGAGTTGTCGAGGGTGATGAGCAGCAGTCCTGCGCTCACGGTCACGAGGAGCAGCCATCGCTGCCGAGGGCTCGTGGGCGATACCAC > 1038 Sked_02410 PFAM:_Major_Facilitator_Superfamily;_TIGRFAM:_metabolite-proton_symporter major_facilitator_superfamily_transporter YP_003313044.1 11 MTHHKPTATDGRDKATRTTSDLKRAAVSGWLGTAMEFMDFQLYSLAAAIVFNEIFFPEVSPAIGLIAAMGTYGVGYVARLVGAVYFGRMGDRIGRKKVLFITIALMGASTTLIGVLPTYAQIGIAAPALLVLLRLVQGFGAGAEIAGATTMLAEYAPVKRRGVIASLVSLGTNTGTLAATGLWAFLLLVLSEDQLLSWGWRLPFLLSFFLMILAVWIRRNLKESPVFENRADVDDDGVALSRDELVAAAKDDSDPQDKGVLSAALHQRKGKAFFIALGLRFGQAGNSGLIQTFLVGFLATTLLLDRSIATNALLISSAVGFATVPLVGLISDRVGRRPVYMVLTVVSGILAFPLMHLIAQGSTLGVTISMILLHNLAVLGLFSLESVTMAELFGARTRFTQLALAKEIGGILATAIGPLLAATLTAATGSWWPIAAMLVAYSSITLISAIVSPEVQGRDLVRLEDAA high_GC_Gram+ Sanguibacter_keddieii_DSM_10542 Sanguibacter_keddieii_DSM_10542 NC_013521 262972..264375 Ivanova,N.,_Sikorski,J.,_Sims,D.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Lapidus,A.,_Copeland,A.,_Glavina_Del_Rio,T.,_Nolan,M.,_Chen,F.,_Lucas,S.,_Tice,H.,_Cheng,J.F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Pati,A.,_Mavromatis,K.,_Chen,A.,_Palaniappan,K.,_Dhaeseleer,P.,_Chain,P.,_Bristow,J.,_Eisen,J.A.,_Markowitz,V.,_Hugenholtz,P.,_Goker,M.,_Pukall,R.,_Klenk,H.P._and_Kyrpides,N.C. NA 0:1404 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001819.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4082383Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_Cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Sanguibacter_keddieii_ST-74,_DSM_10542Culture_Collection_ID_::_DSM_10542,_ATCC_51767,_CECT_4540,_NCFB_3025GOLD_Stamp_ID_::_Gc01087Funding_Program_::_DOE-GEBA_2007Assembly_Method_::_Newbler_version_1.1.02.15,_PhrapSequencing_Depth_::_10.4x_Sanger;_20x_454Gene_Calling_Method_::_GeneMark_4.6b,_GenePRIMPIsolation_Site_::_Blood_of_dairy_cowsCollection_Date_::_before_1995Isolation_Country_::_SpainHost_Name_::_CowHost_Health_::_HealthyBody_Sample_Site_::_BloodOxygen_Requirement_::_FacultativeCell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileTemperature_Optimum_::_25-30CGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Host##Metadata-END##COMPLETENESS:_full_length. NA 11-OCT-2011 Sanguibacter_keddieii_DSM_10542_chromosome,_complete_genome. NA Sanguinibacteraceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sanguibacter_keddieii_D1BJF4_SANKS.gb Sanguinibacter 269793358 Stand_Genomic_Sci_1_(2),_110-118_(2009) NA NC_013521 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 21304646 1404 NA genomic_DNA NA DSM_10542 NA Sanguinibacter_keddieii NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Micrococcineae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 446469 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Micrococcineae,_Sanguibacteraceae,_Sanguibacter Complete_genome_sequence_of_Sanguibacter_keddieii_type_strain_(ST-74) NA NC_013521.1 TCACGCTGCGTCCTCGAGACGGACGAGGTCGCGGCCCTGGACCTCGGGCGAGACGATCGCCGAGATCAGCGTGATGGAGGAGTACGCGACGAGCATCGCGGCGATGGGCCACCACGAGCCGGTGGCTGCGGTGAGGGTCGCGGCGAGCAGCGGGCCGATCGCGGTGGCGAGGATGCCGCCGATCTCCTTGGCCAGGGCCAGCTGGGTGAAGCGGGTGCGGGCGCCGAACAGCTCGGCCATGGTGACGGACTCGAGGGAGAAGAGGCCGAGGACCGCCAGGTTGTGCAGCAGGATCATCGAGATCGTCACGCCGAGGGTGCTGCCCTGGGCGATGAGGTGCATGAGGGGGAAGGCGAGGATGCCGGAGACCACGGTGAGCACCATGTAGACCGGGCGTCGCCCGACACGGTCGCTGATGAGCCCGACGAGCGGCACCGTCGCGAAGCCGACGGCGGAGCTGATGAGCAGGGCGTTGGTCGCGATGCTGCGGTCGAGCAGGAGCGTCGTCGCGAGGAACCCGACGAGGAAGGTCTGGATGAGGCCGGAGTTGCCTGCCTGGCCGAAGCGCAGCCCGAGCGCGATGAAGAAGGCCTTGCCCTTGCGCTGGTGCAGCGCCGCGGAGAGCACGCCCTTGTCCTGCGGGTCGGAGTCGTCCTTCGCGGCGGCGACGAGCTCGTCGCGGCTGAGTGCCACGCCGTCGTCGTCGACGTCGGCACGGTTCTCGAAGACCGGGCTCTCCTTGAGGTTCCGGCGGATCCACACGGCGAGGATCATGAGGAAGAAGCTCAGCAGGAACGGCAGGCGCCAGCCCCACGAGAGCAGCTGGTCCTCGGAGAGCACGAGGAGCAGGAAGGCCCACAGGCCCGTCGCGGCGAGCGTGCCGGTGTTGGTGCCGAGGCTCACCAGCGAGGCGATCACGCCGCGGCGCTTGACCGGCGCGTACTCGGCGAGCATGGTCGTCGCGCCGGCGATCTCGGCGCCGGCGCCGAAGCCCTGGACGAGGCGCAGCAGGACGAGCAGCGCGGGGGCCGCGATGCCGATCTGCGCGTAGGTGGGGAGCACGCCGATGAGCGTCGTGGACGCCCCCATGAGAGCGATGGTGATGAACAGAACCTTCTTGCGGCCGATCCTGTCGCCCATCCGGCCGAAGTACACGGCGCCGACGAGGCGGGCGACGTAGCCGACGCCGTAGGTGCCCATGGCGGCGATGAGGCCGATGGCCGGGCTCACCTCGGGGAAGAAGATCTCGTTGAAGACGATCGCCGCGGCGAGCGAGTACAGCTGGAAGTCCATGAACTCCATCGCCGTGCCGAGCCACCCGGAGACGGCGGCCCGCTTGAGGTCGCTCGTCGTGCGGGTGGCCTTGTCCCGGCCGTCTGTGGCCGTGGGCTTGTGGTGCGTCAT > 1039 SCHCODRAFT_230657 similar_to_hypothetical_protein_FG01484.1 hypothetical_protein XP_003038016.1 NA MALSPSKLEKSEQFHENKSVTSDIDFNEYSDEAAKYHFGLRGRSLTGAIAFIAATGFTLFGYDQGVMSALLTAPKFVEVFPETGEETGPANHATLQSLLVAIYEIGCLIGALANLWVGDYLGRRRTIVAGGVIMIIGAILQTASYGYAQMIVARIVTGLGNGLNTSTVPAYHSELSPASSRGSLIMIEGTLIAGGIMLSYWIDFGCFFAGSSSAQWRVPIALQILLALVMIIGIEFLPESPRWLYKAGRKAEALAVISALEDKPVTDEHVRTTFRGIREAVELETPGTDKDAKAELKELFTGGPGQNFRRVCLGVVVQCFQQITGINLITYYATLLFERLGLADVESRIVAACNGTEYFLISIVAIFIIDRIGRRKLMLFGATGQCITMILLAILGSLKDNNAAQIVSCVLLFVFNSFFAIGWLGMTWLYPAEIVGLRMRGPANALSTASNWSFNFMVVMVTGPSFQNIDWGTYIVFAALNALIIPVVYFFFPETSGRSLEDMDVVFALAYKEGVSPVKVSLRDDVPLAGTPEADAILRGL Hymenomycetidae Schizophyllum_commune_H4-8 Schizophyllum_commune_H4-8 XM_003037970 NA Ohm,R.A.,_de_Jong,J.R.,_Lugones,L.G.,_Aerts,A.,_Kothe,E.,_de_Vries,R.P.,_Record,E.,_Levasseur,A.,_Baker,S.E.,_Bartholomew,K.A.,_Coutinho,P.M.,_Erdmann,S.,_Fowler,T.J.,_Gathman,A.C.,_Lombard,V.,_Henrissat,B.,_Knabe,N.,_Kues,U.,_Lilly,W.W.,_Lindquist,E.,_Lucas,S.,_Magnuson,J.K.,_Piumi,F.,_Raudaskoski,M.,_Salamov,A.,_Schmutz,J.,_Schwarze,F.W.M.R.,_Stajich,J.E.,_van_Kuyk,P.A.,_Horton,J.S.,_Grigoriev,I.V._and_Wosten,H.A. NA 0:1626 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315672).COMPLETENESS:_incomplete_on_both_ends. NA 12-AUG-2010 Schizophyllum_commune_H4-8_hypothetical_protein,_mRNA. NA Schizophyllaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Schizophyllum_commune_D8PR15_SCHCM.gb Schizophyllum 302696674 Unpublished fungi XM_003037970 NA NA gill_mushrooms basidiomycetes NA 1626 Unknown mRNA NA H4-8 NA Schizophyllum_commune NA forward Agaricomycetidae NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 578458 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Agaricomycetidae,_Agaricales,_Schizophyllaceae,_Schizophyllum Formation_of_mushrooms_and_lignocellulose_degradation_encoded_in_the_genome_sequence_of_Schizophyllum_commune NA XM_003037970.1 ATGGCTCTCTCTCCGTCCAAGCTCGAGAAGAGTGAACAGTTCCACGAGAACAAGTCGGTCACCTCCGACATCGACTTCAACGAGTACAGCGATGAGGCAGCCAAGTACCACTTTGGCTTGAGGGGGAGGTCACTCACTGGCGCCATCGCCTTCATCGCCGCCACTGGTTTCACACTCTTCGGTTACGATCAGGGCGTCATGAGCGCGCTGCTGACCGCTCCAAAGTTCGTGGAGGTCTTCCCGGAGACCGGCGAAGAGACAGGCCCTGCCAATCATGCGACCTTGCAAAGTCTCCTCGTTGCCATTTATGAAATCGGATGCCTCATCGGCGCGTTGGCAAACCTCTGGGTAGGTGACTACCTCGGTCGGCGTCGAACCATCGTCGCTGGCGGTGTCATCATGATCATTGGTGCAATCCTGCAAACGGCTTCCTACGGCTATGCGCAGATGATCGTAGCGCGTATTGTGACTGGGCTGGGCAACGGTCTGAACACCTCGACTGTACCCGCCTACCACTCTGAGCTCTCACCCGCGTCGAGTCGTGGAAGTCTTATCATGATCGAGGGTACTCTCATCGCAGGCGGTATCATGCTATCATACTGGATTGACTTTGGATGCTTCTTCGCTGGATCGTCATCGGCACAATGGAGAGTCCCCATCGCTCTTCAAATCCTGCTTGCTCTGGTCATGATCATTGGCATCGAATTCCTGCCCGAATCCCCGCGTTGGCTCTACAAGGCCGGCCGCAAGGCTGAAGCCCTCGCTGTCATTTCTGCGCTCGAGGACAAGCCTGTGACCGACGAGCATGTCCGCACGACGTTCCGCGGTATTCGCGAGGCCGTTGAGCTTGAGACACCTGGGACGGACAAGGATGCAAAGGCTGAGCTCAAGGAGCTCTTCACGGGTGGCCCTGGCCAGAACTTCCGTCGTGTCTGCCTTGGCGTTGTTGTGCAGTGCTTCCAGCAGATCACTGGTATCAACCTCATCACGTACTACGCGACGCTGCTCTTCGAGCGCCTTGGCCTGGCAGACGTCGAGTCTCGTATTGTGGCCGCCTGCAATGGCACGGAATACTTCCTGATCTCCATCGTTGCTATCTTCATCATCGACCGCATTGGACGCCGAAAGCTGATGTTGTTCGGCGCCACTGGCCAATGCATCACCATGATTTTGCTCGCCATCCTCGGGTCGTTGAAGGACAACAACGCGGCGCAGATCGTGTCCTGCGTGCTGCTCTTCGTCTTCAACTCGTTCTTCGCCATCGGCTGGCTCGGTATGACCTGGCTGTACCCGGCTGAGATTGTGGGTTTGCGCATGCGTGGTCCGGCGAATGCTTTGTCGACTGCATCCAACTGGAGCTTCAACTTCATGGTCGTTATGGTCACTGGGCCCTCTTTCCAGAATATTGATTGGGGAACCTACATCGTCTTCGCGGCCCTGAACGCCCTCATCATCCCCGTCGTCTACTTCTTCTTCCCCGAGACCTCGGGACGCAGTCTCGAAGACATGGACGTCGTGTTCGCGCTCGCGTACAAGGAGGGCGTCTCGCCTGTCAAGGTCTCTCTGCGCGATGATGTGCCGCTGGCAGGAACGCCCGAGGCGGACGCCATCCTTCGCGGGCTGTGA > 1040 SCHCODRAFT_64752 similar_to_hypothetical_protein_CNBC7150 hypothetical_protein XP_003038763.1 NA MTTNIFNPEYRRAMIFCGVAVIGAVLYGYDGTYYTSILEMDKFKHDFGERQADGTYDITSTIRSVTTSIVQAGEVVGALFAGPIGDWGGRRAGILAACMLVTLGVVLQMIVAGNVPLLGVGRAVLGMGIGVISNSVPLYLSEIPPVAIRGSVVGSWQLMLAIGQVIGACVGQGTHAMTNTGAYRIPMGINLAFIVVLSLGVIFIIPESPRWLISKNKNGEALAALHRVHKGQSDEDAQVEEQYDTYMKAKQEEAELTNSEPSRWRDLLKGTTRRKFICAVGILISQQIGGVQFIFSYTTTFLGNVGVGSPFIITIIVDIVEVLGVVVSFFLVNRFGRRPLLLITSAFMTAFLVIVGAMGSLKGHRSQGENNLIAAGIILYVFFFNLAWGPLAWVVATELSGGKNRQKIMSIGTACFWLSAFVVTFTLPYLYDATEAGLEAQIGYIYAGGSAIAMAFVYFFIPETLGRSLEEINHLMDAQIPARSWAAYDLAKEVEREVKTKGDRPEVQHVEKVSSKQEV Hymenomycetidae Schizophyllum_commune_H4-8 Schizophyllum_commune_H4-8 XM_003038717 1..1560 Ohm,R.A.,_de_Jong,J.R.,_Lugones,L.G.,_Aerts,A.,_Kothe,E.,_de_Vries,R.P.,_Record,E.,_Levasseur,A.,_Baker,S.E.,_Bartholomew,K.A.,_Coutinho,P.M.,_Erdmann,S.,_Fowler,T.J.,_Gathman,A.C.,_Lombard,V.,_Henrissat,B.,_Knabe,N.,_Kues,U.,_Lilly,W.W.,_Lindquist,E.,_Lucas,S.,_Magnuson,J.K.,_Piumi,F.,_Raudaskoski,M.,_Salamov,A.,_Schmutz,J.,_Schwarze,F.W.M.R.,_Stajich,J.E.,_van_Kuyk,P.A.,_Horton,J.S.,_Grigoriev,I.V._and_Wosten,H.A. NA 0:1560 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315672).COMPLETENESS:_incomplete_on_the_5_end. NA 12-AUG-2010 Schizophyllum_commune_H4-8_hypothetical_protein,_mRNA. NA Schizophyllaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Schizophyllum_commune_D8PRR3_SCHCM.gb Schizophyllum 302698168 Unpublished fungi XM_003038717 NA NA gill_mushrooms basidiomycetes NA 1560 Unknown mRNA NA H4-8 NA Schizophyllum_commune NA forward Agaricomycetidae NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 578458 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Agaricomycetidae,_Agaricales,_Schizophyllaceae,_Schizophyllum Formation_of_mushrooms_and_lignocellulose_degradation_encoded_in_the_genome_sequence_of_Schizophyllum_commune NA XM_003038717.1 ATGACCACCAATATCTTCAACCCGGAGTACCGCCGGGCGATGATCTTCTGCGGCGTCGCCGTCATCGGCGCTGTCCTCTACGGGTACGATGGGACGTACTACACGTCCATCCTCGAGATGGACAAGTTCAAGCACGACTTCGGTGAACGTCAGGCGGACGGGACGTACGACATCACCAGTACCATTCGCTCGGTGACCACCTCCATCGTCCAGGCCGGTGAAGTTGTCGGTGCTCTGTTCGCTGGCCCGATCGGTGACTGGGGAGGCCGTCGCGCGGGTATCCTTGCCGCCTGCATGCTCGTCACCCTCGGTGTTGTCCTGCAAATGATCGTGGCAGGCAACGTTCCCCTCCTCGGCGTCGGTCGCGCCGTCCTTGGTATGGGTATCGGTGTCATCTCCAACTCGGTCCCTCTCTATCTGTCGGAGATACCCCCCGTGGCCATCCGTGGTTCCGTTGTCGGTAGCTGGCAGCTGATGCTGGCTATTGGACAAGTCATCGGTGCCTGCGTCGGCCAAGGAACGCATGCTATGACCAACACGGGCGCTTATCGCATCCCTATGGGCATCAACCTCGCGTTTATCGTTGTCCTCTCTCTCGGTGTCATCTTCATTATCCCCGAGTCGCCTCGTTGGCTCATCTCGAAGAACAAGAACGGTGAAGCGCTTGCTGCTCTCCATCGCGTGCACAAGGGCCAGTCGGACGAGGATGCTCAGGTCGAGGAGCAGTACGACACGTACATGAAGGCGAAGCAGGAGGAGGCCGAGTTGACCAACTCCGAGCCGAGTCGCTGGAGGGACCTGCTCAAGGGCACCACGCGCCGCAAGTTCATCTGCGCCGTTGGTATCCTCATCAGCCAACAAATTGGCGGTGTGCAGTTCATCTTCTCGTACACGACCACCTTTCTCGGAAACGTCGGCGTCGGCTCTCCGTTCATCATCACCATCATTGTGGATATTGTCGAAGTCCTTGGCGTCGTCGTCAGCTTCTTCCTCGTTAACCGCTTCGGACGTCGCCCACTTCTGCTCATCACCAGCGCCTTCATGACCGCCTTCCTCGTCATCGTCGGCGCCATGGGCTCCCTCAAGGGCCACCGCTCCCAGGGCGAAAACAATCTCATTGCCGCCGGCATTATCCTCTACGTGTTCTTCTTCAACTTGGCTTGGGGTCCCCTCGCGTGGGTCGTCGCCACCGAGCTCTCCGGCGGCAAGAACAGGCAGAAGATCATGTCCATCGGCACGGCGTGCTTCTGGCTCTCCGCATTCGTCGTCACGTTCACGCTTCCGTACCTGTACGACGCGACCGAGGCTGGGCTCGAGGCGCAGATCGGTTACATCTACGCCGGTGGCTCTGCGATCGCGATGGCGTTCGTCTACTTCTTCATCCCGGAGACCCTCGGACGCAGTCTCGAGGAGATCAACCACCTCATGGACGCGCAGATCCCTGCCCGCTCATGGGCGGCGTACGACCTCGCCAAGGAGGTCGAGCGCGAGGTCAAGACGAAGGGCGACCGCCCCGAGGTCCAGCACGTCGAGAAGGTCTCCTCCAAGCAGGAGGTATAA > 1041 SCHCODRAFT_66992 similar_to_hypothetical_protein_CNBF0420;_expressed_hypothetical_protein hypothetical_protein XP_003034658.1 NA MVSRASSFWADDSMPSYLQDEDIEEQERLVGDGDVDDGRTALDRTIDRIGMGSYQWTLLSLCGFGWLADNMWIEAVAIILPRVQRHYDVPDNHVGTLSSTMFAGMMFGAVGWGSCSDLFGRSTAFNATLFFTALFGILASLAGSFTQLCIVLFFLGSSVGGSMPTDGTLLLEHMPDGKQYLVTALSVFFSVGAVLSAMIGLFILPQNSCFEAECDVETQNRGWKYLLAILGVITLAMFFARMVFFRLHESPRYLVHAGRHQEALQSLQMISRFNGADLSLKLADVHDELHPEDADAKEDDDPSSARRSSSLRRSSTLFDAGDDLDEEGNQRPQHPRHTSSTGFANLDADALPDYSSTEPNTPESGLREDAAKIPSVSPPRARPMMSRRRSSVYEVERKVCAFLPQFIRRPLWAWWDRVMLTLTPEWAKTTIVVWVVWCAMSAAFTMFNIFLPKLLESKGTPTSSMADPSSLTASLWDLAIFTIGGCPGSILGAYMVRSSIGRRWSLAGSTFATGAFCLLFVMVESSWAVRATTVGLSLNSTIMWAVLYGWTPEIFSTEVRGTACGIASALSRVGGMISPVLGGVLLMISKSLPLYVSAAMFTVAGFCILLLREDEGEGRVKGKAVLAH Hymenomycetidae Schizophyllum_commune_H4-8 Schizophyllum_commune_H4-8 XM_003034612 68..1954 Ohm,R.A.,_de_Jong,J.R.,_Lugones,L.G.,_Aerts,A.,_Kothe,E.,_de_Vries,R.P.,_Record,E.,_Levasseur,A.,_Baker,S.E.,_Bartholomew,K.A.,_Coutinho,P.M.,_Erdmann,S.,_Fowler,T.J.,_Gathman,A.C.,_Lombard,V.,_Henrissat,B.,_Knabe,N.,_Kues,U.,_Lilly,W.W.,_Lindquist,E.,_Lucas,S.,_Magnuson,J.K.,_Piumi,F.,_Raudaskoski,M.,_Salamov,A.,_Schmutz,J.,_Schwarze,F.W.M.R.,_Stajich,J.E.,_van_Kuyk,P.A.,_Horton,J.S.,_Grigoriev,I.V._and_Wosten,H.A. NA 0:1887 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315670). NA 12-AUG-2010 Schizophyllum_commune_H4-8_hypothetical_protein,_mRNA. NA Schizophyllaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Schizophyllum_commune_D8PXY4_SCHCM.gb Schizophyllum 302689956 Unpublished fungi XM_003034612 NA NA gill_mushrooms basidiomycetes NA 1887 Unknown mRNA NA H4-8 NA Schizophyllum_commune NA forward Agaricomycetidae NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 578458 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Agaricomycetidae,_Agaricales,_Schizophyllaceae,_Schizophyllum Formation_of_mushrooms_and_lignocellulose_degradation_encoded_in_the_genome_sequence_of_Schizophyllum_commune NA XM_003034612.1 ATGGTATCCCGCGCGTCAAGCTTTTGGGCAGACGACAGCATGCCCTCTTACCTCCAAGACGAAGACATCGAGGAGCAGGAGCGCCTCGTTGGCGACGGCGACGTGGACGATGGGCGGACGGCGCTGGACAGAACGATAGATAGAATAGGGATGGGCTCGTACCAATGGACGTTGCTCTCGCTATGCGGTTTCGGCTGGTTAGCTGACAATATGTGGATAGAAGCGGTGGCAATCATCCTTCCCAGAGTACAGAGGCATTATGACGTACCCGACAACCATGTTGGAACCTTGTCGTCGACTATGTTTGCTGGCATGATGTTCGGCGCCGTCGGATGGGGAAGCTGCTCCGATCTCTTCGGTCGCAGTACCGCCTTCAACGCGACGCTCTTCTTCACCGCCCTCTTCGGCATCCTCGCCTCCCTCGCAGGCTCCTTCACCCAACTATGCATCGTCCTCTTCTTCCTCGGGTCGTCCGTCGGGGGCTCTATGCCTACAGACGGCACGCTACTGCTCGAGCACATGCCGGACGGGAAGCAGTACCTCGTAACAGCTCTATCGGTCTTCTTCTCCGTCGGAGCCGTCCTGTCTGCGATGATCGGGCTATTCATACTGCCTCAAAACTCGTGCTTCGAGGCCGAGTGCGATGTCGAGACGCAGAATAGAGGATGGAAGTATCTGCTTGCTATCCTAGGCGTGATCACCCTGGCCATGTTCTTTGCCCGCATGGTCTTCTTCCGACTGCATGAATCGCCGCGATACCTCGTCCACGCAGGGCGGCACCAAGAAGCACTGCAGAGCCTGCAGATGATCTCGCGCTTCAACGGCGCCGATCTATCACTCAAACTAGCCGACGTGCACGACGAGCTGCATCCCGAGGATGCGGATGCGAAGGAGGACGACGACCCGTCTTCGGCGCGCCGATCGTCCTCTTTGCGCCGCTCGTCAACGCTCTTCGATGCGGGCGATGATCTGGACGAGGAAGGCAACCAGCGTCCACAGCACCCGCGACACACCTCTAGTACCGGATTTGCCAATCTGGACGCGGATGCGCTGCCCGACTATAGCTCCACAGAGCCGAACACACCAGAGTCCGGCCTTCGTGAAGACGCGGCGAAGATACCTTCCGTATCGCCACCGCGCGCTCGACCTATGATGTCGCGACGGCGGTCCTCGGTCTACGAGGTCGAGCGCAAGGTGTGCGCGTTCCTGCCGCAATTCATCCGAAGGCCGCTGTGGGCGTGGTGGGACCGGGTGATGCTGACCCTGACGCCGGAGTGGGCGAAGACGACCATCGTGGTGTGGGTGGTGTGGTGCGCGATGAGTGCGGCATTCACGATGTTCAACATCTTCCTGCCGAAGTTGCTGGAGTCGAAGGGGACGCCGACGTCCTCGATGGCCGATCCGAGCTCGTTGACGGCAAGCTTATGGGATCTGGCGATATTCACCATCGGGGGGTGTCCGGGGTCTATTCTCGGAGCCTACATGGTGCGCTCCAGCATAGGCCGAAGGTGGTCGCTGGCGGGGAGCACGTTCGCCACCGGGGCATTCTGCCTCCTCTTCGTGATGGTGGAGAGCTCGTGGGCGGTGCGGGCGACGACCGTGGGGCTCAGCCTCAACTCGACCATCATGTGGGCCGTGCTCTATGGCTGGACGCCGGAGATCTTCAGCACTGAAGTCCGCGGCACGGCGTGCGGGATTGCGTCTGCGCTTTCGAGAGTAGGCGGAATGATTTCGCCCGTGCTCGGAGGCGTGCTGTTGATGATCAGCAAGTCGCTGCCGCTCTACGTGTCCGCGGCGATGTTCACGGTCGCCGGCTTCTGCATACTGCTCTTGCGGGAGGATGAGGGAGAGGGGCGCGTGAAGGGGAAGGCCGTCCTTGCGCACTAG > 1042 SCHCODRAFT_107567 similar_to_MFS_sugar_transporter,_putative hypothetical_protein XP_003033072.1 NA MKRTIHRPPPAILGPQNGVCRAAAPSAPRASSPCKSLSYLFFSFAGLWLIERAGRRKLMMWGAAGQAVCYILISALLSQASDPENGTKFGAGATAFFFVYYIFFGICWQGVPWLYPVEINSLAMRTKGAAVATASNWISNYCVVQATPPGIENLGWKFYLIWMSFNIIFVPLLRRPLGLRSFGVKTVSNDLQRQVYRPYYVDVEKERMQYVDSTKKKEKLADDASIEHDEAPAALNAA Hymenomycetidae Schizophyllum_commune_H4-8 Schizophyllum_commune_H4-8 XM_003033026 NA Ohm,R.A.,_de_Jong,J.R.,_Lugones,L.G.,_Aerts,A.,_Kothe,E.,_de_Vries,R.P.,_Record,E.,_Levasseur,A.,_Baker,S.E.,_Bartholomew,K.A.,_Coutinho,P.M.,_Erdmann,S.,_Fowler,T.J.,_Gathman,A.C.,_Lombard,V.,_Henrissat,B.,_Knabe,N.,_Kues,U.,_Lilly,W.W.,_Lindquist,E.,_Lucas,S.,_Magnuson,J.K.,_Piumi,F.,_Raudaskoski,M.,_Salamov,A.,_Schmutz,J.,_Schwarze,F.W.M.R.,_Stajich,J.E.,_van_Kuyk,P.A.,_Horton,J.S.,_Grigoriev,I.V._and_Wosten,H.A. NA 0:>714 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315669).COMPLETENESS:_incomplete_on_both_ends. NA 12-AUG-2010 Schizophyllum_commune_H4-8_hypothetical_protein,_mRNA. NA Schizophyllaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Schizophyllum_commune_D8Q2Q3_SCHCM.gb Schizophyllum 302686783 Unpublished fungi XM_003033026 NA NA gill_mushrooms basidiomycetes NA 714 Unknown mRNA NA H4-8 NA Schizophyllum_commune NA forward Agaricomycetidae NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 578458 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Agaricomycetidae,_Agaricales,_Schizophyllaceae,_Schizophyllum Formation_of_mushrooms_and_lignocellulose_degradation_encoded_in_the_genome_sequence_of_Schizophyllum_commune NA XM_003033026.1 ATGAAGCGCACCATCCACCGCCCTCCGCCTGCCATCCTGGGGCCCCAAAATGGTGTCTGCCGTGCTGCAGCTCCGTCAGCCCCTCGAGCATCGTCACCTTGCAAGTCGCTCTCCTACCTCTTCTTCTCCTTCGCAGGCCTCTGGCTCATCGAGCGCGCCGGTCGTCGGAAGCTGATGATGTGGGGCGCTGCCGGCCAGGCTGTGTGCTATATCCTCATCTCCGCGCTGCTGTCGCAGGCCAGCGACCCTGAGAACGGGACCAAGTTCGGCGCAGGCGCGACGGCGTTCTTCTTCGTGTACTACATCTTCTTTGGCATCTGCTGGCAAGGTGTGCCATGGTTGTACCCCGTCGAGATCAACTCGCTGGCGATGCGCACGAAGGGCGCGGCGGTGGCGACCGCGAGCAACTGGATCTCCAACTACTGCGTCGTGCAGGCGACGCCGCCCGGCATCGAGAACCTCGGCTGGAAGTTCTACCTCATCTGGATGTCCTTCAACATCATCTTCGTGCCGCTGCTGCGACGTCCTCTAGGGCTTCGCTCGTTTGGAGTCAAGACGGTATCCAATGACTTACAGCGTCAAGTATACCGCCCATACTATGTCGATGTGGAGAAGGAGCGGATGCAGTATGTGGACTCGACGAAGAAGAAGGAGAAGCTCGCGGACGACGCGTCCATCGAGCACGACGAGGCTCCCGCGGCGCTGAATGCAGCG > 1043 SCHCODRAFT_258665 similar_to_probable_metabolite_transporter;_expressed_hypothetical_protein hypothetical_protein XP_003027285.1 NA MAEFTLRDRMRNVSLIFACGTALFSDGYANNVIGSVKTYLTRIYGPDILERHDFSTILSSVAFAGTVVGMLVFGYLSDKMGRKFGMMTATGIVAFFSFLSACSQGVSTDGLLAMLCVMRFFIGIGIGAEYPCGSVSASEQSEGSAIAKGTQHRWFTLATNSMIDFGFVIGAFVPLVLYWIFGDNHLRAAWRGSLALGTVPAVLVFLWRLNMDEPERYKKDSMKHAKIPYLLILRRYGWQLAAISFTWFLYDFITYPFGLYSSTVVDSITGGATALNVVFGWSVVINAFYLPGTISGAFIVDYLGPKNTMIFGLIMQAIIGFIMSGCYKQLSEHIAAFAVVYGIFLSFGEVGPGNCLGLLASKTSPTAIRGHFYGIAAAIGKIGAFVGTWAFPPIIDAFGGASTDRGNTGPFWIGSGLAVLSAIVTFFFIRPLEHDGMLEEDAKFREYLEANGYDTSQMGLIDTVSTVSVDLEKDKKEIMS Hymenomycetidae Schizophyllum_commune_H4-8 Schizophyllum_commune_H4-8 XM_003027239 1..1443 Ohm,R.A.,_de_Jong,J.R.,_Lugones,L.G.,_Aerts,A.,_Kothe,E.,_de_Vries,R.P.,_Record,E.,_Levasseur,A.,_Baker,S.E.,_Bartholomew,K.A.,_Coutinho,P.M.,_Erdmann,S.,_Fowler,T.J.,_Gathman,A.C.,_Lombard,V.,_Henrissat,B.,_Knabe,N.,_Kues,U.,_Lilly,W.W.,_Lindquist,E.,_Lucas,S.,_Magnuson,J.K.,_Piumi,F.,_Raudaskoski,M.,_Salamov,A.,_Schmutz,J.,_Schwarze,F.W.M.R.,_Stajich,J.E.,_van_Kuyk,P.A.,_Horton,J.S.,_Grigoriev,I.V._and_Wosten,H.A. NA 0:1443 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315661).COMPLETENESS:_incomplete_on_the_5_end. NA 12-AUG-2010 Schizophyllum_commune_H4-8_hypothetical_protein,_mRNA. NA Schizophyllaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Schizophyllum_commune_D8QID0_SCHCM.gb Schizophyllum 302675201 Unpublished fungi XM_003027239 NA NA gill_mushrooms basidiomycetes NA 1443 Unknown mRNA NA H4-8 NA Schizophyllum_commune NA forward Agaricomycetidae NA NA Dikarya NA NA NA NA NA NA eukaryotes NA 578458 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Agaricomycotina,_Agaricomycetes,_Agaricomycetidae,_Agaricales,_Schizophyllaceae,_Schizophyllum Formation_of_mushrooms_and_lignocellulose_degradation_encoded_in_the_genome_sequence_of_Schizophyllum_commune NA XM_003027239.1 ATGGCTGAGTTCACACTCCGGGACCGCATGAGGAACGTCTCCCTGATCTTCGCATGCGGGACAGCGCTGTTCTCGGACGGCTACGCGAACAACGTGATCGGTAGTGTCAAGACCTACCTCACGCGCATCTACGGCCCCGACATCCTCGAGCGCCATGACTTCAGCACCATCCTCTCCTCCGTCGCCTTCGCTGGCACGGTCGTCGGCATGCTCGTCTTCGGCTACCTCTCCGATAAGATGGGACGCAAGTTCGGGATGATGACGGCCACGGGCATCGTCGCGTTCTTCTCCTTCCTCTCGGCGTGCTCGCAGGGCGTGAGCACCGATGGACTGCTTGCCATGCTCTGCGTGATGCGATTCTTCATCGGGATTGGCATTGGCGCTGAATACCCGTGTGGCTCGGTGTCAGCGTCTGAGCAGTCGGAAGGCAGTGCCATTGCAAAGGGCACCCAGCACCGATGGTTCACGCTCGCCACGAACTCCATGATTGACTTCGGCTTCGTCATCGGCGCCTTCGTTCCCTTGGTCCTTTACTGGATCTTCGGCGACAACCATCTCCGCGCCGCATGGAGAGGCTCACTGGCACTCGGTACCGTCCCCGCCGTCCTGGTCTTCCTCTGGCGTCTGAACATGGACGAGCCGGAGCGGTACAAGAAGGACTCCATGAAGCACGCCAAGATCCCGTACTTGTTGATCTTGCGCCGCTACGGCTGGCAGCTCGCCGCCATCTCCTTCACCTGGTTCCTCTACGACTTCATTACGTATCCCTTTGGCCTGTACTCCTCCACAGTCGTGGACAGCATTACAGGCGGTGCGACGGCGCTGAACGTAGTATTCGGCTGGAGCGTCGTCATCAACGCGTTCTACCTGCCCGGGACCATTAGCGGCGCCTTCATCGTCGACTACCTGGGCCCGAAGAACACCATGATCTTCGGCCTAATCATGCAAGCCATCATAGGCTTCATCATGAGCGGATGCTACAAGCAGCTCTCCGAGCACATCGCAGCCTTCGCCGTCGTATACGGCATCTTCTTGTCCTTTGGCGAGGTCGGACCCGGCAACTGCCTGGGATTGCTAGCGAGCAAGACGTCCCCGACGGCCATCCGCGGCCACTTCTACGGCATCGCGGCAGCCATTGGGAAAATCGGCGCGTTCGTGGGTACGTGGGCCTTCCCGCCCATAATTGACGCGTTCGGTGGCGCATCAACCGACCGCGGCAACACCGGTCCTTTCTGGATCGGGAGTGGGCTTGCTGTCTTGAGCGCGATTGTCACGTTCTTCTTCATCCGGCCCTTGGAGCACGACGGTATGTTGGAGGAAGATGCCAAGTTCCGCGAGTATCTCGAGGCGAACGGGTACGACACCTCGCAGATGGGTCTGATCGACACCGTCTCGACTGTGTCTGTCGACCTCGAGAAGGACAAGAAGGAGATAATGTCGTAG > 1044 SJAG_04241 NA inorganic_phosphate_transporter XP_002175360.1 NA MSYSIRSIPRQEPEPAVPLEQVEAETEKKYLGFVTKREIKLLAIAGTGFLLDSYDLFIINLVSPILSYLYWGGLEGHEHYPSGIRGVVNAATNIGNILGQLLFGFLGDFFGRKFVYGKEMIVVIIATILIICLPNSIKSPTGKMMWLFAFRVVLGIGIGGDYPMSASITSERSHLNRRGTLLSWIFSNQGWGTLTGCVATIIILLCYEHVLNVEGKYHKLNGVWRLQFGIALVPAVLVMIPRLRMQESQQFKDSKNVMAKGDGAVEMDVIKEAKANNSSNSATYYQSEDNPSKDKSQAEVDIEAAAAPSLTESGQDAASKVIPTEGEDPKTGFLAYFSEWRHFKILFASAACWFLLDIAFYGVNLNQSVILSEMGFSNGKNEYHKLQKNAIGNLIIAVAGYIPGYWVTVFFIERLGRKWIQIQGFLICSLLFAILAGTWSTISTAGRFICVALAQFFFNFGPNTTTFCFPAEVFPSRVRAFSHGICAACGKCGAIISALLFNKLTDVIGFASVLWIFFGCMIVGALITLLLPETANRDADLIDRQEIAAMRRGEKSILDRNEKWAWWKHGI Schizosaccharomycetes Schizosaccharomyces_japonicus_yFS275 Schizosaccharomyces_japonicus_yFS275 XM_002175324 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Young,S.,_LaButti,K.,_Sykes,S.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_White,J.,_OLeary,S.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L._and_Rhind,N. NA 0:1716 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002234920).COMPLETENESS:_incomplete_on_both_ends. NA 19-NOV-2008 Schizosaccharomyces_japonicus_yFS275_inorganic_phosphate_transporter,_mRNA. NA fission_yeasts /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Schizosaccharomyces_japonicus_B6K6B3_SCHJY.gb Schizosaccharomyces 213409178 Unpublished fungi XM_002175324 NA NA Schizosaccharomycetales sac_fungi NA 1716 NA mRNA NA yFS275 NA Schizosaccharomyces_japonicus_var._versatilis NA forward NA NA NA Dikarya NA Taphrinomycotina NA NA NA NA eukaryotes NA 402676 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Taphrinomycotina,_Schizosaccharomycetes,_Schizosaccharomycetales,_Schizosaccharomycetaceae,_Schizosaccharomyces The_Genome_Sequence_of_Schizosaccharomyces_japonicus_yFS275 NA XM_002175324.1 ATGAGTTACAGCATCCGTTCAATTCCTCGGCAAGAGCCGGAGCCAGCTGTTCCTTTGGAGCAGGTCGAGGCCGAAACTGAAAAGAAGTATTTGGGCTTCGTGACGAAGAGAGAGATTAAGCTTTTGGCCATTGCAGGTACGGGTTTCTTGCTCGACAGTTATGACCTTTTCATCATCAACCTGGTCTCGCCCATTCTGTCCTACCTCTACTGGGGTGGTCTCGAAGGCCATGAGCATTACCCGTCTGGCATTCGTGGTGTCGTGAATGCTGCAACTAACATCGGTAACATTTTGGGCCAGCTGTTGTTCGGTTTCTTGGGTGACTTTTTTGGCCGTAAGTTTGTGTATGGTAAGGAGATGATCGTGGTCATCATTGCTACCATCCTCATTATTTGCTTGCCCAACAGCATCAAGAGTCCTACGGGAAAGATGATGTGGCTTTTTGCTTTCCGTGTCGTTCTTGGTATTGGTATCGGTGGTGATTATCCTATGTCTGCCTCCATCACGTCCGAACGGTCCCATCTGAACCGTCGTGGTACACTTCTTTCCTGGATTTTCTCCAACCAAGGTTGGGGCACGCTTACCGGTTGCGTTGCCACGATTATTATTCTTCTTTGCTACGAGCATGTTTTGAATGTTGAAGGCAAGTACCACAAGTTGAATGGCGTTTGGCGTTTGCAATTCGGTATCGCCTTGGTGCCCGCTGTTCTTGTTATGATCCCTCGTTTGCGTATGCAGGAGTCCCAGCAATTCAAGGACTCGAAGAACGTCATGGCCAAGGGTGATGGTGCCGTTGAGATGGATGTGATCAAGGAGGCCAAGGCTAATAATTCCTCCAACTCTGCCACATACTACCAGTCCGAAGACAATCCCTCCAAGGACAAGTCGCAAGCTGAGGTTGACATTGAGGCCGCTGCCGCACCTAGTCTGACTGAGAGTGGCCAAGATGCCGCTTCCAAGGTGATCCCCACGGAAGGTGAGGACCCCAAGACTGGTTTCCTTGCATACTTTTCCGAATGGCGTCACTTCAAGATTCTGTTTGCCTCTGCCGCCTGTTGGTTCTTGCTTGATATCGCTTTCTATGGCGTTAACCTTAACCAATCCGTCATTCTTTCTGAAATGGGTTTCAGCAATGGAAAGAACGAGTACCACAAATTGCAGAAGAACGCTATTGGTAACTTGATTATCGCTGTTGCTGGTTATATTCCCGGTTACTGGGTAACTGTTTTCTTTATTGAGCGTCTTGGTCGCAAGTGGATTCAAATTCAGGGTTTCCTGATTTGTAGTTTGCTTTTCGCTATCTTGGCTGGAACCTGGAGCACTATTTCTACCGCTGGTCGTTTCATCTGTGTCGCCTTGGCCCAATTCTTTTTCAACTTTGGACCCAACACTACCACTTTCTGTTTCCCTGCTGAAGTCTTCCCCTCGCGTGTGCGTGCTTTCTCGCATGGTATTTGTGCTGCCTGTGGTAAATGTGGTGCTATCATCTCTGCTCTACTTTTCAACAAGCTGACTGACGTTATCGGTTTCGCTAGCGTCCTTTGGATCTTCTTCGGCTGCATGATCGTGGGTGCCCTCATTACCTTGCTTCTTCCCGAGACTGCAAACCGTGACGCCGACTTGATTGATCGTCAAGAAATCGCAGCAATGCGCCGGGGTGAAAAGTCTATTCTTGATCGTAACGAGAAGTGGGCTTGGTGGAAGCATGGCATCTAA > 1045 SS1G_01800 NA hypothetical_protein XP_001597606.1 NA MDVDVPDTEPPKIPQTHTTNKSLQIDAQTATEIEHTMTFRDGLRNYPAAIGWSAFFSLGIIMTAFDPQLLGSLYATPAFQKDFGYLFKGGYIISAPWQTALGMGNPIGQVVGALLIGFPMEWYGRRWTYMVCVAGTAALIFMQFFARSLPVLLVGELIGGLILGTYTTIAPTYASEVCPIALRGHLTSYINLCFVMGQLLANGVIAGTSQLNNHWAYSAPFAIQWLWPLIILIGTIFAPESPWWLVRKDRLEEAEKSLNRLSSKKINNKLVLAMMIETDRLELEMETGTTYWDVFNKTNIRRTEIAIAVFVTQVFSGIYLVGYAAYFFQLAGLAGSKAFDMSVGFLAVGFVGTILSWILISRYGRRRIYNTGLAVLTTIMFIIGILDCVPNYSKRPAVIWAQSTLMIVWNGIFDLTIGPVCYTIFCEVSATKVRAKTIAVATAMQALVGIVMTVAIPYMINPDQANWRGKIGFFYGGCSVVCFIWCWLRVPETKGRTYEELDLMFAKGVKTRDFKNYKID Leotiomycetes Sclerotinia_sclerotiorum_1980_UF-70 Sclerotinia_sclerotiorum_1980_UF-70 XM_001597556 NA Birren,B.,_Galagan,J.,_Lander,E.,_Devon,K.,_Nusbaum,C.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Yandava,C.,_Kodira,C.,_Zeng,Q.,_Alvarado,L.,_OLeary,S.,_Dickman,M.B.,_Kohn,L._and_Rollins,J. NA 0:1563 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001820834).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Sclerotinia_sclerotiorum_1980_hypothetical_protein_(SS1G_01800)_partial_mRNA. NA Sclerotiniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sclerotinia_sclerotiorum_A7E922_SCLS1.gb Sclerotinia 156063367 Unpublished fungi XM_001597556 NA NA Leotiales sac_fungi NA 1563 NA mRNA NA 1980 NA Sclerotinia_sclerotiorum NA forward NA NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 665079 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Leotiomycetes,_Helotiales,_Sclerotiniaceae,_Sclerotinia Annotation_of_the_Sclerotinia_sclerotiorum_1980_genome NA XM_001597556.1 ATGGACGTCGACGTCCCCGACACAGAACCTCCAAAAATTCCCCAAACCCACACCACCAACAAATCCCTCCAAATCGACGCGCAAACCGCTACAGAAATCGAACACACAATGACTTTTCGTGATGGACTCCGCAACTATCCCGCCGCAATAGGATGGTCAGCATTTTTCTCCCTTGGAATTATCATGACGGCTTTTGATCCGCAGTTATTGGGGAGTTTATATGCGACGCCGGCTTTTCAGAAGGATTTTGGGTATTTGTTTAAGGGGGGTTATATTATTAGTGCGCCGTGGCAGACGGCGTTGGGCATGGGAAATCCAATTGGTCAGGTTGTGGGAGCGTTGCTTATTGGGTTTCCGATGGAGTGGTATGGTCGGAGATGGACGTACATGGTATGTGTAGCAGGCACGGCAGCATTGATATTTATGCAATTTTTCGCGCGATCATTACCGGTTCTTCTCGTTGGTGAACTAATCGGAGGATTGATATTGGGTACTTATACGACTATCGCGCCTACCTACGCATCAGAAGTATGTCCCATTGCGCTTCGAGGACATTTAACTTCTTATATTAATCTCTGTTTTGTGATGGGTCAACTCCTTGCCAATGGAGTTATTGCTGGAACATCTCAACTCAATAATCACTGGGCGTATAGCGCGCCTTTTGCAATTCAATGGTTATGGCCTCTCATCATCTTAATCGGTACCATCTTTGCTCCTGAATCGCCATGGTGGCTCGTTCGAAAAGATAGACTTGAGGAAGCGGAAAAATCGTTGAATCGTCTCTCTTCGAAGAAAATCAATAATAAATTGGTCTTGGCTATGATGATTGAGACGGATAGGTTGGAGTTGGAGATGGAGACGGGAACAACTTATTGGGATGTTTTTAATAAGACTAACATACGTAGGACGGAAATTGCAATTGCGGTATTTGTTACGCAGGTTTTTAGTGGGATATATCTTGTGGGATATGCGGCTTACTTCTTTCAACTCGCCGGCCTTGCGGGATCCAAAGCTTTCGATATGAGCGTCGGATTTCTAGCCGTTGGTTTCGTAGGAACTATCCTATCATGGATTTTGATATCAAGATATGGTCGAAGACGCATCTACAACACTGGACTTGCTGTACTCACGACAATTATGTTCATTATCGGAATCTTGGATTGCGTACCAAATTATTCGAAGCGTCCCGCTGTCATTTGGGCGCAATCAACACTCATGATCGTTTGGAACGGTATCTTCGACCTTACAATCGGACCAGTTTGCTATACAATTTTCTGCGAGGTATCCGCTACTAAAGTTCGCGCCAAAACCATTGCTGTGGCTACCGCAATGCAAGCGCTTGTTGGAATCGTTATGACAGTCGCAATTCCTTATATGATCAATCCGGATCAAGCGAATTGGAGAGGAAAGATAGGATTCTTTTATGGTGGTTGTTCGGTAGTATGCTTTATATGGTGTTGGTTGAGAGTTCCAGAAACCAAAGGAAGGACGTATGAAGAATTGGATTTGATGTTTGCGAAAGGCGTAAAGACGAGAGACTTCAAAAATTATAAAATCGATTAA > 1046 SS1G_04273 NA hypothetical_protein XP_001594466.1 NA MDFQHTKPTFELAGQEFPRVTWYKQKGMRGLYCCLMFVVLTSATNGYDGSMMNGLQSLPAWEDYFHPTASQLGLLNCIMSVGSLVALPFVPYAADILGRRTGVMIGCVLMLIGVLLQSLGFSFGMFVGARFLIGFGVAIAHGASPLLITELVHPQHRAIYTTIYNTTWYIGSFVAAWLTFGTNNIAGNWSWRAPSVVQAFPSILQMTFIWFVPESPRWLIAKGRNELALKILADVHACGDQNDEVVQLEYQEIRQTLSLEKEVESNPWAELWKTPGNRHRLIILVSLGFFSQWSGNGLVSYYINIVLEQVGIHSSTTKLLINAILQIVNMIVAITMCFFVDRLGRRLLFLVSTGGMLAVFIVWTICSAQFSMHGSSASAHAVIVMIFLYYVFYNCAWSGLLVGYGVEILPYNIRAKGLTIMFLAVDLSLFFNQYVNPIALDHLHWKYYIFYCVWLTFEFFVIWKFYIETRNTPLEEIVKHFDGDNAIVGGQVATEKAKVIAAEHDLQIGDETEGGLDEKAGVHHTEERMV Leotiomycetes Sclerotinia_sclerotiorum_1980_UF-70 Sclerotinia_sclerotiorum_1980_UF-70 XM_001594416 NA Birren,B.,_Galagan,J.,_Lander,E.,_Devon,K.,_Nusbaum,C.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Yandava,C.,_Kodira,C.,_Zeng,Q.,_Alvarado,L.,_OLeary,S.,_Dickman,M.B.,_Kohn,L._and_Rollins,J. NA 0:1593 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001820831).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Sclerotinia_sclerotiorum_1980_hypothetical_protein_(SS1G_04273)_partial_mRNA. NA Sclerotiniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sclerotinia_sclerotiorum_A7EG32_SCLS1.gb Sclerotinia 156057084 Unpublished fungi XM_001594416 NA NA Leotiales sac_fungi NA 1593 NA mRNA NA 1980 NA Sclerotinia_sclerotiorum NA forward NA NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 665079 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Leotiomycetes,_Helotiales,_Sclerotiniaceae,_Sclerotinia Annotation_of_the_Sclerotinia_sclerotiorum_1980_genome NA XM_001594416.1 ATGGATTTCCAACATACGAAGCCCACTTTCGAACTCGCGGGCCAGGAGTTTCCTCGAGTAACATGGTATAAGCAAAAGGGAATGAGAGGCTTGTACTGTTGTTTGATGTTCGTCGTTCTGACCTCTGCGACAAATGGATACGATGGCTCCATGATGAACGGTCTTCAATCTCTTCCCGCCTGGGAAGATTATTTCCATCCCACAGCATCTCAACTTGGACTCCTCAACTGTATCATGTCCGTCGGCTCACTCGTTGCTCTTCCGTTCGTACCATATGCTGCGGATATACTGGGCAGACGCACAGGTGTAATGATCGGCTGCGTACTCATGCTCATTGGTGTACTTCTCCAGAGTTTGGGATTCTCATTTGGCATGTTCGTGGGTGCTCGATTCTTGATCGGATTTGGAGTTGCAATAGCACATGGTGCATCACCACTGCTCATCACCGAACTTGTCCATCCACAACATCGAGCCATCTACACCACCATTTATAATACAACATGGTACATTGGAAGCTTCGTCGCAGCATGGTTAACATTCGGAACGAATAACATCGCAGGAAATTGGTCATGGAGAGCTCCGTCTGTCGTACAGGCTTTCCCTTCCATACTCCAAATGACCTTCATCTGGTTCGTACCTGAATCACCAAGATGGCTCATCGCGAAGGGTAGAAACGAGCTAGCACTCAAGATTTTGGCAGACGTACACGCTTGCGGAGATCAGAATGATGAAGTTGTACAGCTCGAATACCAGGAAATTCGCCAAACATTATCACTCGAAAAAGAAGTAGAGAGCAACCCATGGGCCGAGCTGTGGAAGACTCCTGGAAACAGACATCGTCTTATTATCCTCGTCTCCCTCGGTTTCTTCTCTCAATGGTCAGGAAATGGTCTTGTCAGTTACTACATTAATATTGTATTGGAACAAGTCGGTATCCACAGCTCGACTACCAAGCTTTTAATCAATGCTATCCTTCAAATTGTCAACATGATCGTAGCTATAACAATGTGCTTCTTCGTTGATAGACTCGGTCGACGTCTATTGTTCTTGGTATCCACGGGGGGAATGCTTGCTGTCTTTATTGTTTGGACCATTTGCTCGGCTCAGTTTTCGATGCATGGAAGCTCAGCTTCTGCACATGCCGTTATCGTCATGATTTTCCTCTATTACGTATTCTATAACTGTGCGTGGTCGGGGCTTCTGGTTGGATACGGTGTCGAGATTCTGCCATACAACATCCGTGCAAAGGGATTGACAATTATGTTCTTGGCGGTCGACCTCTCCTTGTTCTTCAACCAATATGTTAACCCGATTGCTTTGGATCACCTCCACTGGAAGTATTACATATTCTACTGCGTATGGTTAACTTTTGAGTTCTTTGTCATCTGGAAGTTTTACATCGAGACACGTAACACTCCTTTGGAAGAGATCGTGAAGCATTTCGATGGAGACAATGCGATAGTTGGTGGTCAAGTTGCAACCGAGAAGGCAAAAGTCATTGCGGCGGAACATGATCTTCAGATTGGTGATGAGACTGAAGGTGGCCTAGATGAGAAGGCAGGCGTTCACCATACAGAGGAGAGAATGGTTTAA > 1047 SS1G_04598 NA hypothetical_protein XP_001594790.1 NA MSGVLGTQAYVRYFNNPQSYSQGGITCAMPAGSLIGALSSSFIADKWSRRASIQIASVIWILGSIIQCASVNVAMLVVGRVIAGICVGIASSICPVYQSEIAPKEIRGRVVSLQQWAITWGILIQYFIQYGASTIGGGANNPNQPTSAFRIPWGVQIVPAVILFFGMFFLPKSPRWLASKDRWEEAIKVIANLHGGGDVNHPKVLAEYREIEEALRFEREEAISSYKQLVAPRMIKRVILGMSIQMWSQLCGMNIMMYYVVYIMQGANIANPLVTASIQTRTEQNQNLTWVVHDKKAVSSAIVAMTYLFVCAFATTWGPSSWTYPAEIFPNKIRAKAVSLATSANWFWNCVLAFAVPPLLKNINWKMYMIFATFNGLAYIHIFLTAPETKGRTLEEMDAVFNSGLHAWQSLPKESRLDKLAKDIEEGNLKVVAPIGGAGRVAWSSSK Leotiomycetes Sclerotinia_sclerotiorum_1980_UF-70 Sclerotinia_sclerotiorum_1980_UF-70 XM_001594740 NA Birren,B.,_Galagan,J.,_Lander,E.,_Devon,K.,_Nusbaum,C.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Yandava,C.,_Kodira,C.,_Zeng,Q.,_Alvarado,L.,_OLeary,S.,_Dickman,M.B.,_Kohn,L._and_Rollins,J. NA 0:1344 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001820831).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Sclerotinia_sclerotiorum_1980_hypothetical_protein_(SS1G_04598)_partial_mRNA. NA Sclerotiniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sclerotinia_sclerotiorum_A7EH06_SCLS1.gb Sclerotinia 156057732 Unpublished fungi XM_001594740 NA NA Leotiales sac_fungi NA 1344 NA mRNA NA 1980 NA Sclerotinia_sclerotiorum NA forward NA NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 665079 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Leotiomycetes,_Helotiales,_Sclerotiniaceae,_Sclerotinia Annotation_of_the_Sclerotinia_sclerotiorum_1980_genome NA XM_001594740.1 ATGTCTGGTGTTCTTGGAACGCAAGCATACGTCAGATACTTTAACAATCCTCAGTCTTATAGTCAAGGAGGAATAACCTGTGCTATGCCTGCTGGATCTCTCATCGGCGCTCTGTCCTCCTCCTTCATCGCCGATAAATGGTCTAGACGGGCAAGTATTCAAATCGCATCGGTCATTTGGATTCTTGGCTCAATTATTCAGTGTGCTTCAGTCAATGTAGCCATGCTGGTTGTTGGTCGAGTCATTGCTGGTATTTGTGTTGGTATTGCTTCTTCGATCTGTCCTGTCTACCAGTCTGAGATTGCACCAAAAGAAATTAGAGGTAGAGTTGTCTCCCTTCAACAATGGGCAATTACATGGGGTATTCTCATCCAGTACTTCATTCAATATGGTGCTTCGACAATTGGAGGTGGCGCGAACAATCCAAACCAACCCACTTCTGCATTTCGAATTCCTTGGGGTGTACAAATTGTTCCAGCAGTTATTCTCTTCTTCGGCATGTTCTTCCTACCGAAATCTCCTAGATGGTTGGCATCCAAGGATAGATGGGAAGAGGCCATTAAGGTCATTGCGAACCTTCATGGTGGCGGTGATGTCAACCACCCAAAGGTTCTCGCGGAATATCGGGAGATTGAGGAGGCACTTCGATTCGAACGCGAGGAAGCTATCAGCTCTTACAAGCAGCTTGTAGCCCCACGAATGATCAAGCGTGTTATCTTGGGAATGTCTATCCAAATGTGGTCTCAGCTTTGTGGAATGAACATCATGATGTACTACGTCGTCTACATCATGCAGGGTGCAAACATTGCCAACCCCCTCGTCACTGCCTCAATTCAGACTCGGACTGAGCAGAACCAAAATCTTACGTGGGTCGTTCACGACAAGAAAGCTGTATCATCTGCCATCGTCGCTATGACATACCTATTTGTTTGTGCATTTGCAACAACCTGGGGACCATCATCGTGGACCTACCCAGCCGAAATTTTCCCAAATAAGATTCGTGCAAAGGCTGTCTCTCTCGCAACCTCGGCAAATTGGTTCTGGAATTGCGTCCTCGCTTTCGCGGTTCCGCCTCTGCTGAAGAACATCAACTGGAAGATGTACATGATCTTTGCCACATTCAACGGACTTGCTTATATCCACATTTTTCTTACAGCACCCGAGACTAAAGGCAGAACACTCGAGGAGATGGACGCCGTTTTTAATAGCGGTTTGCACGCATGGCAGTCCCTTCCAAAGGAGTCGAGGTTGGATAAATTGGCGAAGGACATTGAAGAGGGAAATCTCAAGGTTGTAGCTCCCATTGGTGGTGCTGGTAGAGTTGCATGGTCATCATCAAAATGA > 1048 SS1G_05095 NA hypothetical_protein XP_001593667.1 NA MSKLSTPPSSSIDAMEPEKVERVATQDKVPGHSNYYEKNGLRAYGDDEDHYHEPKDVGAKFLGSGAIPPYIYSDLGGTDRWIWFVLANLLALAGVCPFVGSLSDLLGRRYVALLGAVFVAIGMIVCSTAQTMNTFIGGMAIAGIGAGINELTALAATSELAPTSKRGTYVAVLVFTIIPFCPSVLWGQLIASHAGWRCIIMFWPTQAFNVYGHDPVGVGIRGIPVGFSILAGACIALWLLSVLRGRNKELMIASSILMTAGCGALACANRYNLSTLWILLIIAGLGIGGIVVPASIITTIICPDDLIATVTALTLSIRVIGGSIGYCVYYNIFVSKFIPAATLHIGGLMARELHIRNRTLIHEAIEYTAHALLPLLKTIPGIAGNETAYQMVVIAGQEAYAESYVYVYYASTAFGAVSILAACFLGDINAYMDDHVAVVMH Leotiomycetes Sclerotinia_sclerotiorum_1980_UF-70 Sclerotinia_sclerotiorum_1980_UF-70 XM_001593617 NA Birren,B.,_Galagan,J.,_Lander,E.,_Devon,K.,_Nusbaum,C.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Yandava,C.,_Kodira,C.,_Zeng,Q.,_Alvarado,L.,_OLeary,S.,_Dickman,M.B.,_Kohn,L._and_Rollins,J. NA 0:1326 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001820830).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Sclerotinia_sclerotiorum_1980_hypothetical_protein_(SS1G_05095)_partial_mRNA. NA Sclerotiniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sclerotinia_sclerotiorum_A7EIF2_SCLS1.gb Sclerotinia 156055485 Unpublished fungi XM_001593617 NA NA Leotiales sac_fungi NA 1326 NA mRNA NA 1980 NA Sclerotinia_sclerotiorum NA forward NA NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 665079 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Leotiomycetes,_Helotiales,_Sclerotiniaceae,_Sclerotinia Annotation_of_the_Sclerotinia_sclerotiorum_1980_genome NA XM_001593617.1 ATGAGTAAATTATCTACACCTCCATCTAGCAGTATCGATGCCATGGAACCCGAGAAAGTCGAGCGCGTCGCAACGCAGGATAAAGTGCCCGGTCATAGTAATTACTATGAGAAGAATGGACTGCGTGCATACGGCGATGATGAAGATCATTATCACGAACCTAAAGATGTAGGAGCTAAATTTCTGGGTTCAGGCGCCATTCCACCTTATATTTATTCTGACCTTGGTGGAACAGATAGGTGGATATGGTTTGTCCTCGCAAATCTCCTTGCTTTAGCGGGAGTATGTCCATTTGTCGGAAGTCTCTCTGATCTCCTCGGGCGCCGTTATGTCGCACTCCTAGGAGCTGTATTTGTTGCCATTGGTATGATAGTTTGTTCAACCGCTCAGACTATGAATACATTTATTGGAGGAATGGCTATTGCGGGAATTGGAGCTGGCATTAATGAACTCACTGCTTTAGCTGCAACATCCGAGTTAGCACCTACCTCAAAACGTGGAACCTACGTCGCCGTCCTCGTTTTCACCATCATTCCATTTTGTCCCTCAGTTTTGTGGGGCCAACTCATCGCCTCGCATGCAGGATGGCGTTGCATTATCATGTTCTGGCCTACTCAGGCCTTCAATGTATATGGGCATGATCCTGTTGGTGTGGGTATCAGAGGAATACCAGTTGGCTTCTCAATTCTAGCCGGAGCTTGTATCGCGTTGTGGTTACTAAGTGTGCTACGAGGTAGAAATAAGGAATTGATGATTGCAAGTTCGATATTAATGACAGCCGGATGTGGTGCCCTTGCATGCGCCAATAGATACAACCTATCAACATTATGGATTTTGCTCATCATCGCTGGATTGGGAATCGGTGGAATTGTCGTGCCAGCTTCGATAATAACCACGATAATATGTCCCGACGACTTGATCGCAACCGTTACTGCCCTTACCCTCTCCATCCGAGTTATCGGTGGCAGTATAGGTTATTGTGTCTACTACAACATCTTCGTAAGCAAATTTATTCCTGCTGCCACGTTGCATATTGGAGGCCTGATGGCTCGAGAACTCCATATCAGAAACAGAACTCTTATTCATGAAGCCATTGAGTATACAGCTCATGCTCTACTGCCACTGCTCAAGACCATTCCAGGTATTGCCGGGAATGAAACTGCGTATCAGATGGTTGTGATCGCAGGACAGGAGGCATATGCTGAAAGCTATGTTTACGTGTACTATGCGAGCACGGCATTTGGGGCTGTGAGCATTTTGGCGGCGTGTTTTCTGGGTGATATCAATGCATATATGGATGACCATGTAGCTGTGGTAATGCATTGA > 1049 SS1G_06223 NA hypothetical_protein XP_001593301.1 NA MSPKWIRGTLVCAYQLAITCGILLAAVVNIFTESIDGPNAFRVPFSIQFVWAGILFLGLALLPETPRYLIKRGQHQAAASSLSRLRRLDITHPALVEELAEIEANHEYELSLELYLLLVSIIIVTLLLHLSLPLKYAVTDLALYSGTTFFKNVGISSPYVIQLISNIVNTVSTLPGMILVESLGRRRLLMVGSAGMAISHFLIAAVGTAAQEEARAVNIVIIIFVCFFIFFFASSWGPVVWVVTSEIFPLKVRAKSMSISTASNWLLNFAIAYSVPYMTSSGPGYANLQAKIFFLWACFCVIAFIFVWGMVYETSKISLEQIDELYERVEHAWNSNNFEPSWSFQEMRDEGASASGIQLQLQLATQEEPRRRTGTSASATGSEGTMSEEDKIIAGLGDVDLSY Leotiomycetes Sclerotinia_sclerotiorum_1980_UF-70 Sclerotinia_sclerotiorum_1980_UF-70 XM_001593251 NA Birren,B.,_Galagan,J.,_Lander,E.,_Devon,K.,_Nusbaum,C.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Yandava,C.,_Kodira,C.,_Zeng,Q.,_Alvarado,L.,_OLeary,S.,_Dickman,M.B.,_Kohn,L._and_Rollins,J. NA 0:1212 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001820829).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Sclerotinia_sclerotiorum_1980_hypothetical_protein_(SS1G_06223)_partial_mRNA. NA Sclerotiniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sclerotinia_sclerotiorum_A7ELM6_SCLS1.gb Sclerotinia 156054749 Unpublished fungi XM_001593251 NA NA Leotiales sac_fungi NA 1212 NA mRNA NA 1980 NA Sclerotinia_sclerotiorum NA forward NA NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 665079 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Leotiomycetes,_Helotiales,_Sclerotiniaceae,_Sclerotinia Annotation_of_the_Sclerotinia_sclerotiorum_1980_genome NA XM_001593251.1 ATGTCGCCCAAATGGATTCGAGGAACTCTGGTATGCGCATATCAACTCGCCATCACTTGTGGAATTCTTCTCGCGGCTGTCGTCAACATATTTACGGAAAGTATTGATGGACCGAATGCTTTTCGAGTCCCTTTTTCAATACAATTCGTTTGGGCAGGCATCCTCTTCCTTGGCCTTGCTTTGTTACCAGAAACACCTCGATATCTCATTAAACGTGGTCAACATCAGGCTGCTGCATCGTCACTAAGTCGTCTTCGTCGCCTTGACATAACACACCCTGCCCTGGTAGAAGAATTGGCCGAGATTGAAGCAAATCATGAATATGAGTTGAGCTTAGAACTTTATCTTCTACTAGTGAGTATCATTATTGTTACTCTTTTGTTACATCTTTCACTTCCGTTAAAATATGCAGTGACTGATCTAGCTCTTTATAGTGGCACAACTTTCTTCAAGAATGTCGGAATTTCGTCACCTTACGTCATTCAACTTATCTCCAACATAGTAAACACCGTCTCAACTCTTCCCGGTATGATTTTAGTTGAATCATTAGGTCGACGTCGTCTCCTCATGGTAGGTTCAGCAGGAATGGCAATTTCTCATTTCTTGATTGCCGCTGTTGGTACTGCAGCACAAGAAGAGGCGAGAGCTGTGAACATAGTAATCATCATATTCGTCTGCTTCTTCATCTTTTTTTTCGCTTCATCCTGGGGACCAGTCGTTTGGGTCGTCACATCAGAAATCTTCCCATTAAAGGTTCGAGCAAAGTCAATGTCAATCTCCACGGCTTCGAATTGGCTCCTTAATTTCGCCATCGCTTATAGCGTTCCATATATGACAAGCAGCGGACCCGGTTATGCAAATCTTCAAGCAAAGATATTTTTCCTTTGGGCTTGCTTTTGTGTAATTGCCTTTATATTCGTTTGGGGAATGGTTTATGAAACGAGCAAGATCAGTCTTGAGCAGATTGATGAGTTATATGAACGAGTTGAGCATGCTTGGAATAGTAATAACTTTGAACCAAGTTGGAGTTTCCAAGAGATGAGGGATGAAGGTGCATCTGCAAGTGGAATTCAATTACAACTACAACTCGCTACTCAAGAAGAACCGAGAAGACGAACGGGTACAAGTGCAAGTGCAACGGGAAGTGAGGGTACTATGTCAGAGGAAGATAAAATCATTGCAGGATTAGGAGATGTTGATTTAAGTTATTAA > 1050 SS1G_10857 NA hypothetical_protein XP_001588410.1 NA MSAVMIVQTGLIYNVQYHTELKKACGIGAAIVLFIFEGAFTIGFQATVWVYPSEILPLRLRQRGSSVSTACNWIFNYMIVQITPIALNNIGYKTYIIFGVLNACWVPIIYLWFPETKGLELEDVDGLFERGEGVGVGTGKRGVGKRRAVERGVGGSTLSDERVRIGRASGSRSGVGVSGSVSNNTGNGKGSEEDIGFGTSEQAERVERS Leotiomycetes Sclerotinia_sclerotiorum_1980_UF-70 Sclerotinia_sclerotiorum_1980_UF-70 XM_001588360 NA Birren,B.,_Galagan,J.,_Lander,E.,_Devon,K.,_Nusbaum,C.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Yandava,C.,_Kodira,C.,_Zeng,Q.,_Alvarado,L.,_OLeary,S.,_Dickman,M.B.,_Kohn,L._and_Rollins,J. NA 0:630 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001820820).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Sclerotinia_sclerotiorum_1980_hypothetical_protein_(SS1G_10857)_partial_mRNA. NA Sclerotiniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sclerotinia_sclerotiorum_A7EZU0_SCLS1.gb Sclerotinia 156043706 Unpublished fungi XM_001588360 NA NA Leotiales sac_fungi NA 630 NA mRNA NA 1980 NA Sclerotinia_sclerotiorum NA forward NA NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 665079 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Leotiomycetes,_Helotiales,_Sclerotiniaceae,_Sclerotinia Annotation_of_the_Sclerotinia_sclerotiorum_1980_genome NA XM_001588360.1 ATGTCGGCGGTTATGATTGTTCAAACGGGATTGATTTATAATGTGCAATATCATACGGAGCTCAAGAAGGCCTGTGGGATCGGAGCAGCGATCGTGCTTTTTATTTTTGAAGGGGCCTTTACTATTGGTTTTCAAGCTACTGTATGGGTCTACCCCTCTGAAATCCTCCCACTTCGTCTCCGACAACGCGGCTCTTCAGTCTCCACAGCCTGCAACTGGATATTTAACTACATGATCGTACAGATTACTCCCATTGCACTTAATAATATAGGCTATAAAACGTATATTATTTTCGGTGTACTAAATGCATGTTGGGTTCCGATTATTTATTTATGGTTTCCTGAGACAAAGGGACTGGAGCTGGAGGATGTGGATGGACTTTTTGAGAGGGGGGAAGGAGTTGGGGTAGGGACAGGAAAGAGGGGTGTGGGAAAAAGAAGGGCGGTTGAAAGAGGAGTGGGGGGAAGTACTTTGAGTGATGAGCGGGTGAGAATTGGGCGTGCGAGTGGAAGTCGAAGCGGAGTTGGCGTGAGTGGGAGTGTTAGTAATAATACAGGGAATGGAAAGGGATCTGAGGAAGATATTGGATTTGGAACTAGCGAACAGGCGGAAAGGGTCGAGAGGTCTTAA > 1051 SS1G_12412 NA hypothetical_protein XP_001586428.1 NA MVSPEISPTQKTFAGLHGRKLGLLVSTIATTGFLLFGYDQGVMSGIIDADPFNAYFPETKNDSVYQGFVTAIYEIGCLIGAIFILWYGDSTGRRRAMMLGGVIMIIGVVIQITAIKGSNATAQFIIGRTITGIGNGINTSTIPTYQAECSRSTNRGLLICIEGGVIAFGTMIAYWIDYGASYGPDNLTWRFPIAFQVFFGLILIIGTYFLPESPRWLLAKERHEEGLDVIAALSGLENNDPQVQLEKTIIMDSIMASGAATKTPFSALFTGGKTQHFRRMLLGSSSQFFQQLGGCNAVIYYFPILFQKSIGTSKNLALLLGGVNMIVYSIFATVSWFIIEKAGRRKLFIIGTIGQCLSMVLVFACLIPDHGKGPSAKGAGVGLFTYIAFFGATWLPLPWLYPAEINPLRTRARANAVSTCSNWLFNFTIVMVTPIMIANISWGTYLFFAVVNACFIPIIYFFYPETKRRSLEEIDIIFAKGYTENISYVKASQDLPYLSPAEVEQMARHYGFETADVESRSTSDAEKEKPEWERRERQSRSDADDVTSVPQAHHRGNAAHDGFRND Leotiomycetes Sclerotinia_sclerotiorum_1980_UF-70 Sclerotinia_sclerotiorum_1980_UF-70 XM_001586378 NA Birren,B.,_Galagan,J.,_Lander,E.,_Devon,K.,_Nusbaum,C.,_Cuomo,C.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Yandava,C.,_Kodira,C.,_Zeng,Q.,_Alvarado,L.,_OLeary,S.,_Dickman,M.B.,_Kohn,L._and_Rollins,J. NA 0:1701 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001820815).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Sclerotinia_sclerotiorum_1980_hypothetical_protein_(SS1G_12412)_partial_mRNA. NA Sclerotiniaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sclerotinia_sclerotiorum_A7F490_SCLS1.gb Sclerotinia 156037401 Unpublished fungi XM_001586378 NA NA Leotiales sac_fungi NA 1701 NA mRNA NA 1980 NA Sclerotinia_sclerotiorum NA forward NA NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 665079 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Leotiomycetes,_Helotiales,_Sclerotiniaceae,_Sclerotinia Annotation_of_the_Sclerotinia_sclerotiorum_1980_genome NA XM_001586378.1 ATGGTTTCTCCTGAGATATCACCAACGCAAAAGACCTTTGCAGGTCTCCATGGCCGAAAGTTGGGTCTTTTAGTCTCGACGATTGCCACAACTGGATTCTTGCTGTTTGGATATGATCAAGGTGTTATGTCCGGAATTATCGACGCAGACCCTTTCAATGCCTATTTCCCTGAAACCAAAAACGACAGTGTTTACCAAGGTTTCGTTACAGCTATCTACGAAATCGGATGTCTCATTGGTGCTATTTTCATCTTGTGGTATGGAGACTCAACTGGCCGAAGAAGAGCTATGATGCTTGGTGGAGTCATTATGATTATCGGAGTTGTTATTCAAATCACTGCTATCAAAGGTTCCAATGCGACTGCTCAGTTCATTATTGGTAGAACAATCACTGGTATCGGAAACGGAATCAACACATCAACCATTCCAACATATCAGGCAGAATGTAGTCGCTCCACCAATCGTGGTTTACTCATCTGTATTGAAGGAGGTGTCATTGCTTTTGGTACTATGATTGCTTACTGGATTGACTACGGTGCTTCTTATGGTCCAGACAACCTTACCTGGCGTTTCCCCATTGCTTTCCAGGTTTTCTTCGGTCTTATTTTGATCATCGGAACTTACTTCCTCCCAGAGTCTCCAAGATGGCTTCTAGCTAAAGAACGCCACGAGGAAGGTCTCGATGTCATTGCCGCTCTCTCTGGTCTCGAAAATAACGATCCACAAGTTCAATTGGAAAAGACCATTATTATGGATAGTATCATGGCATCCGGAGCCGCTACCAAGACACCTTTCTCCGCTCTCTTCACTGGAGGCAAAACCCAACATTTTCGCCGTATGCTTCTCGGATCCTCATCGCAATTTTTCCAACAACTTGGTGGATGTAATGCAGTTATTTACTATTTCCCAATTCTCTTCCAGAAGTCTATTGGTACCTCGAAAAACTTGGCTCTTCTCCTTGGTGGTGTTAACATGATTGTTTACTCCATTTTTGCTACCGTATCTTGGTTCATTATTGAGAAAGCCGGTCGCCGCAAGTTGTTCATCATCGGAACTATCGGACAGTGTCTTTCCATGGTTCTAGTATTCGCTTGTCTTATCCCAGACCACGGAAAGGGTCCATCCGCCAAGGGTGCAGGTGTTGGTCTTTTCACTTACATTGCTTTCTTCGGTGCCACCTGGTTGCCACTACCATGGTTGTACCCAGCTGAAATCAACCCTCTCCGCACTCGTGCCAGAGCTAACGCCGTCTCAACCTGTTCTAACTGGCTTTTCAACTTTACCATTGTCATGGTTACTCCAATTATGATTGCCAATATCTCCTGGGGTACATACCTCTTCTTCGCCGTTGTCAACGCTTGTTTCATTCCCATCATTTACTTCTTCTACCCAGAAACTAAGCGCAGATCTCTCGAGGAAATCGATATTATCTTCGCAAAGGGATACACCGAGAACATCTCCTATGTCAAGGCTTCTCAGGATTTGCCATACTTGTCCCCAGCCGAAGTTGAGCAGATGGCAAGACATTATGGTTTCGAGACCGCAGATGTCGAGAGCAGAAGCACAAGTGATGCTGAGAAAGAGAAGCCCGAGTGGGAGAGACGGGAAAGACAAAGTCGCAGTGATGCAGACGACGTTACATCTGTTCCTCAAGCTCATCACCGTGGAAATGCTGCCCATGATGGATTCAGAAATGATTAA > 1052 Srot_1406 PFAM:_general_substrate_transporter;_KEGG:_pnu:Pnuc_1663_general_substrate_transporter general_substrate_transporter YP_003658701.1 11 MWQNAKSQSAMVLRVVGGNFFEMYDFILFGIFAGDIARAYFPAHSHYISELAAFATFWLGSVMRPVGALVLGGYVDRMGRRKGLVVTLGIMATGTAAIAFTPDYAAIGVLAPLLVLLGRLLQGFSAGVELGGVSVYLAEAAPLGRKGFFVSWQSASQQAAVVVAALLGLLVREEIPARVAAEWGWRIPFVIGCLILPVLFFIRRSLQETEEFANKKHHPSFAEIRQSIANNMPVVLAGMGWVVMTTVYFYFITNYTPTFGREVLSLTSGQSLFVTLCVGVSNLVLLPVFGAMSDRVGRGPLLAVFSALGVLTAYPALLWLVGHPSLGHMAAVELWLSLLYAGYNGALVVALVEVMPDDVRTTGFSLAYSLATLVGTFTELGVTWLRRHEGNSAPGLWLFVASSFSLAATAWFWRGGFLRREAPTSAGSA high_GC_Gram+ Segniliparus_rotundus_DSM_44985 Segniliparus_rotundus_DSM_44985 NC_014168 1403972..1405261 Sikorski,J.,_Lapidus,A.,_Copeland,A.,_Misra,M.,_Glavina_Del_Rio,T.,_Nolan,M.,_Lucas,S.,_Chen,F.,_Tice,H.,_Cheng,J.F.,_Jando,M.,_Schneider,S.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Liolios,K.,_Mikhailova,N.,_Pati,A.,_Ivanova,N.,_Mavromatis,K.,_Chen,A.,_Palaniappan,K.,_Chertkov,O.,_Land,M.,_Hauser,L.,_Chang,Y.J.,_Jeffries,C.D.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Rohde,M.,_Goker,M.,_Bristow,J.,_Eisen,J.A.,_Markowitz,V.,_Hugenholtz,P.,_Kyrpides,N.C._and_Klenk,H.P. NA 0:1290 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001958.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4083320Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Segniliparus_rotundus_DSM_44985Culture_Collection_ID_::_DSM_44985,_ATCC_BAA-972,_CDC_1076,_CIP_108378,_JCM_13578GOLD_Stamp_ID_::_Gi02321Greengenes_ID_::_105706Funding_Program_::_DOE-GEBA_2007Gene_Calling_Method_::_Prodigal,_GenePRIMPIsolation_Site_::_Human_sputumIsolation_Country_::_USAHost_Name_::_Homo_sapiensBody_Sample_Site_::_Airwayscell_Shape_::_Rod-shapedTemperature_Range_::_MesophileTemperature_Optimum_::_28CGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_None##Metadata-END##COMPLETENESS:_full_length. NA 25-JAN-2012 Segniliparus_rotundus_DSM_44985_chromosome,_complete_genome. NA Segniliparaceae_Butler_et_al._2005_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Segniliparus_rotundus_D6Z7E0_SEGRD.gb Segniliparus_Butler_et_al._2005 296392440 Stand_Genomic_Sci_2_(2),_203-211_(2010) NA NC_014168 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 21304703 1290 NA genomic_DNA NA DSM_44985 NA Segniliparus_rotundus_Butler_et_al._2005 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 640132 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Segniliparaceae,_Segniliparus Complete_genome_sequence_of_Segniliparus_rotundus_type_strain_(CDC_1076) NA NC_014168.1 TTAGGCGCTCCCCGCGCTTGTCGGCGCCTCGCGCCGCAGGAACCCTCCTCGCCAAAACCACGCTGTGGCGGCCAGGCTGAAGGACGAGGCCACGAAGAGCCAGAGGCCAGGGGCGCTGTTGCCCTCGTGGCGGCGCAGCCATGTCACACCCAGCTCCGTGAACGTGCCGACGAGCGTCGCCAGGCTGTAGGCGAGCGAGAACCCCGTGGTGCGCACATCGTCGGGCATGACCTCCACCAGCGCCACGACCAGAGCGCCGTTGTATCCCGCGTAGAGCAGTGAGAGCCATAATTCCACGGCTGCCATATGGCCGAGCGACGGATGCCCCACGAGCCACAGCAGGGCCGGGTACGCGGTCAGCACCCCGAGGGCGGAGAAGACGGCGAGGAGCGGGCCCCGCCCGACCCGGTCGGACATGGCCCCGAACACCGGCAGAAGAACAAGGTTCGACACCCCGACGCAGAGCGTCACAAAGAGGCTTTGGCCGGAGGTGAGGCTCAGCACTTCGCGTCCGAAGGTCGGCGTGTAGTTCGTGATGAAGTAGAAGTACACCGTGGTCATGACGACCCAGCCCATCCCGGCGAGCACGACGGGCATATTGTTGGCGATGCTTTGGCGGATCTCGGCGAAACTGGGATGGTGCTTTTTGTTGGCGAACTCCTCTGTCTCCTGCAGGGAACGCCGGATGAAGAAGAGCACCGGCAGGATCAGGCAGCCGATGACGAAGGGAATCCGCCACCCCCATTCGGCCGCCACCCGCGCGGGTATTTCCTCGCGCACCAGGAGCCCGAGCAGGGCCGCCACGACGACGGCCGCCTGTTGGCTGGCGGACTGCCAGCTGACGAAGAAGCCCTTGCGTCCGAGCGGGGCGGCTTCAGCGAGATACACCGAGACGCCGCCGAGCTCCACGCCAGCGGAGAACCCTTGCAGGAGCCTGCCGAGGAGCACCAAGAGCGGAGCGAGCACGCCGATGGCGGCGTAGTCGGGCGTGAAGGCGATCGCGGCCGTGCCAGTCGCCATGATCCCCAAGGTCACCACGAGCCCCTTGCGCCTGCCCATCCGGTCGACATACCCGCCGAGGACCAGCGCGCCCACCGGGCGCATGACCGAGCCGAGCCAAAACGTCGCGAACGCGGCGAGCTCGGAGATGTAGTGGCTGTGCGCGGGGAAGTAGGCGCGGGCGATGTCGCCGGCGAAGATGCCGAACAAGATGAAGTCGTACATCTCGAAGAAATTCCCGCCCACCACGCGCAACACCATGGCTGACTGGGATTTGGCGTTTTGCCACAC > 1053 HMPREF0908_2117 COG:_COG0477;_Pfam:_PF07690;_InterPro:_IPR011701 MFS_family_major_facilitator_transporter EEQ47815.1 11 MILDRLENLPLGRFQYKLLVVTGLGWLFDAMDTGLIAFVLPVLAREWSLTPAQVGWIGSIGLIGMALGAVLAGTIADRIGRKRVFTITVLLYSISTGLCAVAWSYESLLVFRFLVGFGLGGELPVAATLMSEYAPARLRGRFIVLLESFWGLGWLAAACIAYLLIPVFGWQAAFFIGALPALYVFLLRLHMPESIRYLLAKGRVDEAKAIVRDIERQLHMPERPFLDQLAPHRMQAEQVETPGFSALWAKGMRRRTVMLWLAWFGIVFSYYGIFMWLPSMVYAQGFAIVKTFEYVLIMTVAQLPGYYAAAYLVDVIGRRYTLGLFLLLSGVCSYFFGNAGDVTALLGWGAAMSFFNLGAWGVIYTYTPEQYPTAMRALGSGWAAGFGRIGGMIAPMLVGVMLANAFPMSGIFMMFAAVFAVIAGTVILLGRESKQQTLEELEHALGET Negativicutes_Marchandin_et_al._2010 Selenomonas_flueggei_ATCC_43531 Selenomonas_flueggei_ATCC_43531 ACLA01000033 249299..250645 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1347 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._DNA_of_the_sequenced_strain_was_obtained_from_Dr._Jacques_Izard(contact_information:_Forsyth_Institute,_Department_of_MolecularGenetics,_140_The_Fenway,_Boston,_MA,_02135;email:izard@forsyth.org)._The_sequence_generated_included_at_least10_fold_coverage_of_Roche/454_Lifesciences_FLX_fragment_data_and_atleast_8_fold_clone_coverage_of_Roche/454_Lifesciences_paired-enddata._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_with_mapping_tools_such_as_Mosaic_andCrossmatch_and_these_data_were_used_for_error_correction_for_thisversion_of_the_draft_assembly._This_draft_assembly_meets_the_HMPdraft_quality_standards_(more_than_90%_of_the_genome_is_included_incontigs,_more_than_90%_of_a_core_set_of_bacterial_genes_are_foundwith_>_30%_identity_and_>_30%_length;_more_than_90%_of_the_bases_inthe_assembly_have_more_than_5_fold_sequence_coverage,_the_contigN50_length_is_greater_than_5kb,_the_scaffold_N50_length_is_greaterthan_20kb,_and_there_is_less_than_1_gap_per_5kb).This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Sequencing_Technology:_454;_ABIAnnotation_was_added_to_the_contigs_in_June_2009. NA 04-JUN-2009 Selenomonas_flueggei_ATCC_43531_contig00069,_whole_genome_shotgun_sequence. NA cluster_IX /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Selenomonas_flueggei_C4V5W7_9FIRM.gb Selenomonas_von_Prowazek_1913 227072150 Submitted_(14-APR-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACLA01000033 NA NA Selenomonadales_Marchandin_et_al._2010 low_GC_Gram+ NA 1347 NA genomic_DNA NA ATCC_43531 NA Selenomonas_flueggei_Moore_et_al._1987 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 638302 Bacteria,_Firmicutes,_Negativicutes,_Selenomonadales,_Veillonellaceae,_Selenomonas Direct_Submission NA ACLA01000033.1 TCACGTCTCTCCGAGTGCGTGCTCCAACTCTTCAAGCGTCTGCTGTTTGCTCTCACGTCCGAGAAGAATAACAGTTCCCGCAATGACGGCAAAGACCGCCGCGAACATCATAAAAATGCCGCTCATCGGAAATGCATTGGCGAGCATCACGCCGACGAGCATCGGCGCAATCATACCGCCGATACGGCCGAATCCTGCCGCCCAGCCGCTGCCAAGCGCGCGCATCGCCGTCGGGTACTGCTCGGGTGTATAGGTATAGATGACGCCCCACGCGCCGAGATTGAAGAAGCTCATCGCCGCGCCCCAGCCAAGGAGGGCAGTGACATCACCTGCATTGCCGAAGAAATAGCTGCATACGCCGCTGAGAAGGAGGAAGAGCCCGAGCGTATAGCGGCGGCCGATCACATCCACGAGGTAGGCCGCCGCATAGTAGCCCGGCAGCTGAGCGACCGTCATAATGAGGACATACTCGAACGTCTTGACAATGGCAAAGCCCTGCGCATAGACCATCGACGGCAGCCACATAAAGATGCCGTAGTAACTGAACACAATACCGAACCATGCGAGCCAGAGCATCACCGTGCGGCGGCGCATTCCCTTCGCCCAGAGCGCAGAAAATCCCGGTGTCTCCACCTGCTCCGCCTGCATACGGTGCGGGGCAAGCTGATCGAGGAAGGGACGCTCCGGCATATGGAGCTGGCGCTCGATATCGCGCACAATCGCCTTCGCCTCGTCCACACGCCCCTTGGCGAGGAGATAACGGATCGACTCCGGCATGTGCAGGCGCAGGAGGAACACATAGAGCGCGGGCAGGGCACCGATAAAGAACGCCGCCTGCCAGCCAAAGACAGGGATGAGAAGATAGGCGATGCATGCCGCCGCAAGCCAGCCAAGCCCCCAGAAACTCTCAAGGAGCACAATGAAGCGTCCGCGCAGGCGTGCCGGTGCATACTCGCTCATCAGCGTCGCTGCGACGGGCAGCTCTCCGCCCAGGCCGAAGCCGACAAGGAAGCGAAACACGAGCAGCGACTCATAACTCCACGCAACGGCACAGAGCCCCGTTGAGATACTATAGAGGAGAACCGTGATCGTAAACACCCGCTTGCGGCCGATGCGGTCGGCAATCGTCCCCGCGAGCACCGCTCCAAGCGCCATGCCGATCAGCCCAATCGAGCCGATCCATCCCACCTGTGCCGGCGTGAGACTCCACTCGCGCGCCAGTACCGGCAGGACGAAGGCGATCAGCCCCGTGTCCATCGCATCAAACAGCCAGCCAAGCCCCGTGACAACAAGCAGTTTGTACTGGAATCTGCCGAGCGGCAGATTTTCCAGACGATCCAGAATCAT > 1054 SOD_a05520 NA multidrug_resistance_protein_MdtG EFA17897.1 11 MASVPEPVNWKRNLFVAWLGCFLTGAAFSLIMPFLPLYVETLGVSGHEALNMWSGLVFSITFLFSAIASPFWGGLADRRGRKLMLLRSALGMSIVMLLMGMAQNIWQFLALRAVLGLLGGFIPNANALIATQVPRNRSGWALGTLSTGGVSGALIGPLIGGLLADQYGLRPVFYITAAVLLLCFVLTLLYVKEQFTPVQKKDMLHARQVFASLKNPKLILSLFVTTMIIQIATGSIAPILTLYVRDLAGNIHNLAFISGLIASVPGVAALMSAPRLGKLGDRIGPERILVFMLIVSVLLLIPMAFVQTPWQLGVLRFLLGAADGALLPAVQTLLIYNCTNQVAGRIFSYNQSFRDVGNVSGPLLGAAVSASYGFRAVFCVTALVVLFNAAYSWWCLQRRTTRMREDTLQEEQ gamma_subgroup Serratia_odorifera_4Rx13 Serratia_odorifera_4Rx13 ADBX01000001 600442..601680 Thuermer,A.,_Kai,M.,_Weise,T.,_Voss,J.,_Lehmann,R.,_Gottschalk,G._and_Piechullla,B. NA 0:1239 Serratia_odorifera_4Rx13_is_available_at_the_Strain_Collection_ofAntagonistic_Microorganisms_(SCAM;_University_of_Rostock,Microbiology)Genome_Coverage:_17.7xSequencing_Technology:_Sanger;_454. NA 01-DEC-2009 Serratia_odorifera_4Rx13_SODa,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Serratia_odorifera_D1RPI6_SEROD.gb Serratia_Bizio_1823 270044259 Unpublished NA ADBX01000001 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1239 NA genomic_DNA NA 4Rx13 NA Serratia_odorifora NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 682634 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Serratia The_genome_sequence_of_Serratia_odorifera_4Rx13 NA ADBX01000001.1 TTATTGCTCTTCCTGCAGAGTGTCTTCTCTCATTCGTGTCGTCCGGCGTTGCAAACACCACCAGGAATAGGCGGCGTTAAACAGCACCACCAGGGCGGTGACGCAAAACACCGCCCGAAAACCGTAGCTGGCGGAGACCGCAGCGCCCAGCAGCGGACCGCTGACGTTACCTACGTCGCGGAACGACTGGTTATAACTGAAAATCCGCCCGGCGACTTGATTGGTGCAGTTGTAGATCAGCAGCGTTTGCACGGCCGGCAGCAGAGCACCGTCGGCGGCGCCAAGCAGGAAGCGCAATACACCGAGCTGCCACGGCGTTTGTACAAAGGCCATGGGGATCAGCAACAACACCGAGACAATCAGCATAAATACCAGAATGCGCTCAGGGCCAATTCGGTCACCCAGTTTGCCCAGCCGTGGTGCGCTCATCAACGCGGCGACGCCGGGCACCGAGGCGATCAGGCCGCTGATAAAAGCCAGATTATGAATGTTGCCGGCCAAGTCGCGCACATACAGCGTTAAAATCGGCGCGATTGATCCGGTGGCAATCTGGATAATCATGGTGGTGACGAACAGGCTGAGTATCAGTTTGGGGTTTTTCAGCGAAGCGAAGACCTGGCGCGCGTGCAGCATGTCTTTTTTCTGCACCGGGGTGAACTGTTCTTTGACGTACAGCAGCGTCAGCACAAAGCAGAGTAACAGCACGGCGGCGGTGATATAGAACACCGGTCGCAAGCCATATTGGTCGGCCAGCAGGCCACCTATCAGCGGCCCAATCAATGCGCCGCTAACGCCGCCGGTGGACAGGGTACCCAGCGCCCAGCCGCTGCGATTGCGCGGCACCTGGGTGGCAATCAGCGCATTGGCGTTGGGAATAAAACCGCCGAGCAAGCCAAGCACCGCGCGCAGGGCTAAAAACTGCCAGATATTCTGCGCCATCCCCATCAGAAGCATCACAATCGACATACCCAATGCCGAGCGCAGCAGCATCAATTTGCGTCCACGGCGATCGGCCAACCCGCCCCAGAAGGGCGAGGCAATGGCGGAGAACAGGAAGGTGATGCTGAACACCAGGCCGGACCACATGTTCAGCGCTTCGTGGCCGGACACACCGAGCGTTTCTACGTATAACGGCAAGAATGGCATGATCAGGCTGAAGGCGGCCCCGGTGAGGAAGCATCCCAGCCAGGCGACGAACAAGTTACGTTTCCAGTTTACTGGTTCTGGTACCGAAGCCAT > 1055 HMPREF0758_4024 COG:_COG0477;_Pfam:_PF07690;_InterPro:_IPR011701 major_facilitator_superfamily_transporter_(MFS)metabolite/H+_symporter EFE94450.1 11 MAAHTAVIDARRSRQALLAGSVGNFIEWYEFGVYGFLATVIAANFFTLQGESEITSLILTYAAFALAFFCRPIGAVIFGRIGDRIGRRPTLIAVLLLMTLATALIGVMPTYAAIGVAAPLLLTLLRMLQGLFAGGEFGGAVSLMTEFAPPGKRGQYGAWQSLTVALGLLAGAGLVALLAALLSKEQLYQWGWRIPFLLALPMGAVALWLRLKLEETPTFTQAQQSPQSDSAPAASLRGVLTTILLGIGRMMGWSAAGYTFLVVMPSYLQTSLHATFQQALVATVLANVGFALTILPAGILSDRWGRKTVMLTAMLAVILFTFPLLHLLQDVQTSLAIKGIAVLIAGAVVGLLAGPGPAMLAEMFPTRVRYTGLGLAYSLSNAVFSGSAGLIITGLIKQTGNIDIPAYYVVATSLVSLLALMTLRRDDHLRSLNER gamma_subgroup Serratia_odorifera_DSM_4582 Serratia_odorifera_DSM_4582 ADBY01000054 145451..146758 Muzny,D.,_Qin,X.,_Deng,J.,_Jiang,H.,_Liu,Y.,_Qu,J.,_Song,X.-Z.,_Zhang,L.,_Thornton,R.,_Coyle,M.,_Francisco,L.,_Jackson,L.,_Javaid,M.,_Korchina,V.,_Kovar,C.,_Mata,R.,_Mathew,T.,_Ngo,R.,_Nguyen,L.,_Nguyen,N.,_Okwuonu,G.,_Ongeri,F.,_Pham,C.,_Simmons,D.,_Wilczek-Boney,K.,_Hale,W.,_Jakkamsetti,A.,_Pham,P.,_Ruth,R.,_San_Lucas,F.,_Warren,J.,_Zhang,J.,_Zhao,Z.,_Zhou,C.,_Zhu,D.,_Lee,S.,_Bess,C.,_Blankenburg,K.,_Forbes,L.,_Fu,Q.,_Gubbala,S.,_Hirani,K.,_Jayaseelan,J.C.,_Lara,F.,_Munidasa,M.,_Palculict,T.,_Patil,S.,_Pu,L.-L.,_Saada,N.,_Tang,L.,_Weissenberger,G.,_Zhu,Y.,_Hemphill,L.,_Shang,Y.,_Youmans,B.,_Ayvaz,T.,_Ross,M.,_Santibanez,J.,_Aqrawi,P.,_Gross,S.,_Joshi,V.,_Fowler,G.,_Nazareth,L.,_Reid,J.,_Worley,K.,_Petrosino,J.,_Highlander,S._and_Gibbs,R. NA 0:1308 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_ATCC._The_genomic_DNA_wasprepared_from_a_single_bacterial_isolate._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data_and_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data._The_Roche/454_Lifesciences_sequencewas_assembled_using_the_Roche/454_Lifescience_Newbler_assembler.The_contigs_from_the_Newbler_assembly_were_aligned_with_mappingtools_such_as_Mosaic_and_Crossmatch_and_these_data_were_used_forerror_correction_for_this_version_of_the_draft_assembly._This_draftassembly_meets_the_HMP_draft_quality_standards_(more_than_90%_ofthe_genome_is_included_in_contigs,_more_than_90%_of_a_core_set_ofbacterial_genes_are_found_with_>_30%_identity_and_>_30%_length;more_than_90%_of_the_bases_in_the_assembly_have_more_than_5_foldsequence_coverage,_the_contig_N50_length_is_greater_than_5kb,_thescaffold_N50_length_is_greater_than_20kb,_and_there_is_less_than_1gap_per_5kb).This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_11xSequencing_Technology:_454;_ABI. NA 23-MAR-2010 Serratia_odorifera_DSM_4582_contig00057,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Serratia_odorifera_D4E774_SEROD.gb Serratia_Bizio_1823 291421050 Submitted_(27-JAN-2010)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ADBY01000054 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1308 NA genomic_DNA NA DSM_4582 NA Serratia_odorifora NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 667129 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Serratia Direct_Submission NA ADBY01000054.1 ATGGCAGCGCATACAGCGGTAATCGATGCCCGTCGTTCGCGACAGGCATTGCTGGCCGGTTCGGTTGGCAACTTTATTGAATGGTATGAATTCGGCGTTTACGGGTTTCTGGCAACCGTTATCGCCGCCAACTTTTTCACTCTGCAAGGCGAAAGCGAGATCACCAGCCTGATACTGACCTACGCCGCGTTCGCGCTGGCGTTTTTCTGCCGGCCCATCGGCGCGGTGATCTTTGGCCGCATCGGCGACCGCATTGGCCGTCGCCCGACGCTGATCGCGGTACTGCTGCTGATGACGCTGGCTACGGCGCTGATCGGCGTTATGCCAACCTACGCCGCCATCGGCGTTGCCGCACCGCTGCTGCTGACGCTGCTGCGCATGTTGCAAGGGCTGTTTGCCGGCGGCGAGTTTGGCGGCGCGGTGTCGTTGATGACCGAATTTGCCCCGCCCGGAAAACGTGGGCAATACGGTGCCTGGCAATCGCTCACCGTGGCGCTCGGGTTGCTGGCCGGCGCCGGTCTGGTCGCCTTGCTGGCCGCGCTGCTGAGCAAAGAACAATTATACCAGTGGGGATGGCGTATCCCCTTCCTGCTGGCCTTGCCGATGGGCGCGGTGGCACTGTGGCTGCGTCTGAAGCTGGAAGAAACGCCCACCTTTACCCAGGCGCAACAGTCCCCACAGTCCGACTCTGCCCCGGCGGCCAGCCTGCGTGGCGTGCTGACCACCATCCTGCTCGGCATTGGCCGCATGATGGGCTGGTCGGCCGCCGGTTATACCTTCCTGGTGGTGATGCCCTCCTATCTGCAAACCTCGCTGCATGCCACCTTCCAGCAGGCGCTGGTGGCTACGGTGCTGGCCAACGTCGGTTTTGCTCTGACCATCCTGCCTGCCGGTATCCTCAGTGACCGCTGGGGGCGCAAAACGGTGATGCTGACCGCCATGCTGGCGGTGATCCTGTTCACCTTTCCGCTATTGCATCTGCTGCAAGATGTGCAAACCTCGCTGGCAATCAAAGGTATCGCCGTGCTGATCGCCGGTGCGGTGGTTGGCCTACTGGCCGGCCCCGGCCCGGCAATGCTGGCGGAAATGTTTCCGACCCGGGTGCGCTATACCGGCCTCGGGCTGGCCTATTCGCTGTCCAATGCGGTGTTTTCCGGCTCTGCCGGGCTGATCATCACCGGCTTGATCAAACAAACCGGCAATATTGATATTCCCGCCTACTACGTGGTCGCCACCTCATTAGTCAGCCTGCTGGCCTTGATGACACTGCGGCGCGACGACCATTTGCGCTCGCTGAACGAACGCTAA > 1056 Spro_2467 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_ypp:YPDSF_1874_transporter_protein major_facilitator_transporter YP_001478696.1 11 MQNMTSQQIRMDDVPLNRFHLKIAGLMFGAHFTDGYVLGVIGFALAQIKPQMGISAFWEGMLGSSALIGLFIGSLALGWIADHIGRQKIFCFSFVVITLASALQFFATTPEQLFLLRVMVGIGLGGDFSVGHTMLAEFSPRKHRGVLLGSFSVIWTFGYVAAGFAGHFLTAMGPDAWRWLLSSSAVPAFIILIMRIGTPESPRWLLGKGQREQAMAIVHRYFGPNVMLVGEAPTLSKPRFMSLFGPLYRRRTAFNSLFFVCLVIPYFAIYTFLPSILQVMGLDQNFSTDLLLNGLLIVGALLGIVLTMFCSRRGFLIGAFVFLAACLMLLSLIPASQTAWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTGLLPLAIVHYGMPATTGILAVILIIGALVSIAWAPETKGLTLVDASQDPAQRAENALLTSAK gamma_subgroup Serratia_proteamaculans_568 Serratia_proteamaculans_568 NC_009832 2702693..2704054 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_Taghavi,S.,_Newman,L.,_Vangronsveld,J.,_van_der_Lelie,D._and_Richardson,P. NA 0:1362 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000826.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002719Source_DNA_and_bacteria_available_from_Daniel_van_der_Lelie(vdlelied@bnl.gov)Contacts:_Daniel_van_der_Lelie_(vdlelied@bnl.gov)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 06-JUL-2011 Serratia_proteamaculans_568_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Serratia_proteamaculans_A8GEM8_SERP5.gb Serratia_Bizio_1823 157368249 Unpublished NA NC_009832 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1362 NA genomic_DNA NA 568 NA Xantomonas_proteamaculans NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 399741 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Serratia Complete_sequence_of_chromosome_of_Serratia_proteamaculans_568 NA NC_009832.1 ATGCAAAATATGACATCGCAACAAATTCGTATGGATGACGTTCCTTTAAACCGATTCCATCTCAAAATCGCCGGGCTGATGTTTGGTGCCCACTTTACCGACGGCTACGTACTGGGCGTCATTGGTTTCGCCCTGGCACAAATCAAACCACAAATGGGGATCTCCGCCTTTTGGGAAGGCATGCTCGGCAGCTCAGCGTTGATCGGGCTGTTTATCGGTAGCCTGGCCCTCGGCTGGATCGCCGATCATATTGGACGGCAAAAAATATTCTGCTTCAGCTTTGTGGTCATCACTCTCGCCTCGGCTCTGCAGTTTTTTGCCACCACGCCGGAGCAGCTGTTCCTGTTGCGGGTCATGGTGGGCATCGGGCTCGGCGGTGATTTTTCTGTCGGGCATACCATGCTTGCCGAGTTCTCCCCGCGTAAACACCGTGGCGTACTGCTGGGTTCCTTCAGCGTGATTTGGACCTTCGGCTATGTTGCGGCCGGATTTGCCGGGCACTTCCTGACGGCGATGGGTCCGGATGCCTGGCGTTGGCTTCTTTCATCTTCCGCAGTGCCGGCATTCATCATTCTGATCATGCGTATCGGCACGCCGGAATCCCCCCGCTGGCTGCTGGGCAAAGGCCAGCGCGAACAGGCCATGGCAATTGTTCACCGCTATTTCGGCCCGAATGTGATGCTGGTTGGTGAAGCGCCAACCCTCAGCAAACCGCGTTTTATGTCGCTGTTTGGCCCCCTTTATCGTCGTCGTACCGCCTTCAACAGCCTGTTCTTTGTCTGCCTGGTGATCCCGTACTTCGCGATTTATACCTTCTTGCCGTCGATTTTGCAGGTGATGGGTCTGGATCAAAACTTCTCTACTGACCTGTTGCTCAATGGTCTGCTGATCGTCGGAGCGCTGCTGGGTATTGTGCTGACGATGTTCTGTTCACGACGGGGTTTCCTGATTGGTGCCTTCGTGTTCCTGGCCGCCTGTCTGATGTTGCTGAGCCTCATTCCCGCCAGCCAAACGGCCTGGCTGATTGCCCTGTTTGCCGCCTTTACGCTGGTGATGTCGGCGGTCAGCAACCTGGTCGGCGTTTTCCCGGCGGAAAGCTTCCCGACGGAAGTGCGATCGATGGGCGTCGGCTTTGCTACCTCAATGAGCCGTTTGGGATCGGCTATCGGCACCGGCCTGTTGCCGTTGGCGATTGTCCACTATGGCATGCCCGCCACCACCGGCATTCTGGCGGTGATTTTAATTATTGGCGCATTGGTCTCCATCGCCTGGGCGCCGGAAACCAAGGGTTTAACCCTGGTTGATGCCAGCCAGGATCCTGCACAGCGCGCAGAAAATGCTTTGCTGACATCAGCTAAATAA > 1057 Spro_3903 KEGG:_bbr:BB2981_hypothetical_protein hypothetical_protein YP_001480126.1 11 MTGSPNGMLFVATDVAAQDEADFNKWYDREHVEERVRVPGFLSGTRYQALQGGRKYLGLYKTESLASFTSAAYRAAFTEQTPWSVASLDKMRNPMRRVCAVEAVTGQGCGSHLTIVTLEPAQPQVLKACIKHLGSLLAELPGFVRSSLLSPDAELSSPLPKESRENRRLLPMMLIESSSAEAGQRLSELACSQLKIPATDALHYALGWQLTTQELSS gamma_subgroup Serratia_proteamaculans_568 Serratia_proteamaculans_568 NC_009832 4321567..4322892 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Kim,E.,_Taghavi,S.,_Newman,L.,_Vangronsveld,J.,_van_der_Lelie,D._and_Richardson,P. NA 1322:>1326 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000826.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4002719Source_DNA_and_bacteria_available_from_Daniel_van_der_Lelie(vdlelied@bnl.gov)Contacts:_Daniel_van_der_Lelie_(vdlelied@bnl.gov)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 06-JUL-2011 Serratia_proteamaculans_568_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Serratia_proteamaculans_A8GIQ7_SERP5.gb Serratia_Bizio_1823 157368249 Unpublished NA NC_009832 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1326 NA genomic_DNA NA 568 NA Xantomonas_proteamaculans NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 399741 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Serratia Complete_sequence_of_chromosome_of_Serratia_proteamaculans_568 NA NC_009832.1 TCATAACGGCTTGTGTGCCGTTTCCTTCGCGGCAATCACTGCCCACAGTGTGATTAGCAGTGCCAGCACCACATAGGCCGAAATAGCCAGCGTGCTGTCGTAAGACTTGAACAATGAGGCGATGATCAGCGGCGCAAAGCCACCGCCGATAATACCTGCCAACGTATAAGCCAACGACGACCCCGCATAACGTACCCGGGTTGGGAATTGTTCGGTGATAAAGGCCGCCTGCGGGCCATACATTGCCGCATGGATCAACAGACCGACCACCACCGCCAGGCAGATCAGCACCGGCTGGCTGCTGTCGAGCAGCATAAAGAACACAAATGCCCAAACCATCGCCGCCAAAGCCCCACCGATATACACCGGCCGACGGCCAAAACGATCGGACAGTGCGCCGAACATCGGCACGGTAATCGCGTTACCGATCGCCCCCAACATGGTGGCAGCCAACGCCACCGGGCGCGGCAGGTTCAGTACCGTGGTGACGTAGGTCAGGGTAAAAACCACCACCAGCGCATACAGCACGTCGGAACCAATACGCGAACCTCCGGCGATCAACAGCGGACGCCGATGCTGGGTGAAAACTTCGCGGATTGGTGAATGGGTAACGTCCTTCGATGCCTCCAGTTTCAGAAACGCCGGCGTTTCCCCCACGCCACGGCGTAGCCACAGGCCAAACACCACCAGTACCAGGCTAAGCAGGAAGGGAATACGCCAGCCCCACTGCTGGAAATCCTCCGCCGTCATCGCCACCGTCACCAGCGTGATAAGCCCGGTGCCGATCAGCGTTCCGCAGGAAGGGCCAACCTGAGCAAAGGAGGCGTTGCGTCCTCGCTGATGAGGCTTGCCGTGCTCCATCGACAGCAATACCGCCCCCGCCCATTCGCCCCCCAGCGCAATTCCCTGAATAAAGCGCAGCGTCACCAACAGCAGCGGGCTCCAAATCCCCCAGCTGGCATAACCGGGTAGCAACCCCATCAGCGCGGTTGTCACCCCCATGATCACCAGCGTGGCCACCAATACAAAACGCCGTCCCAGCACGTCACCCAGATGACCAAAGACGATACCGCCAATCGGCCGCGAAACATAACCCACCGCGTAAGTGGAAAACGCCAAAATGGTGCCCACCAGCGGATCGAAAGAGGGGAAAAATACGTGGTTGAAAATCAGCGCCGCCATGATGTTGTAGACGGTGAAGTCATACCATTCCAGCGCGGTGCCAATCGAACTGGCCGCCGCCAGCTTGCCGGTGTTTGGCGGGTGGGCGGTAGCCTCGGCAGTGGAGGCTTCCGCGATTGACGGCTGTGTGGTTGAAGTGCTCAT > 1058 Shew_2681 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_stm:STM0079_putative_transport_protein general_substrate_transporter YP_001094806.1 11 MKSKKSFDDLEFTPLHKKIMLWGSGGPFLDGYVLVIIGLALQQLTPALELDAQWIGLVGAATLVGLFIGTALFGYVADLFGRKLMFMIDIIAIAVLSFATMFISSPIELVILRFLIGIVIGADYPIATSMVAEFSPTKQRAFTMGFIAAMWYVGATAANMVGYLLYDVTDGWRWMFGSAIIPCLVILLGRFHLPESPRWLLKKGRIEECKQVMHQFFGKDISLNFETAEQTKYSKLFEAVYLKRILFVGIIWTCQVIPMFAIYTFGPEIIELLGFTDGKDAALGNIVISIFFMAGCIPAMYWLNSIGRRPLLIGSFAIMTAALAVLGIVDTPSICLIVAAFAIYAFFSGGPGILQWLYPNELFPTEIRASAVGAVMSFSRIGTIVSTYGLPLFMATYGISATLLVGAAISLLGLLVSIFMAPETKGLTLETTSSVDFE gamma_subgroup Shewanella_loihica_PV-4 Shewanella_loihica_PV-4 NC_009092 3173838..3175154 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Romine,M.F.,_Serres,G.,_Fredrickson,J.,_Tiedje,J._and_Richardson,P. NA 0:1317 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000606.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3634499Source_DNA_and_bacteria_available_from_Jim_Fredrickson(Jim.fredrickson@pnl.gov)Contacts:_Shewanella_Federation_(shewanella.org)_James_Tiedje_(tiedjej@msu.edu)_Jim_Fredrickson_(Jim.fredrickson@pnl.gov)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)Additional_Notes:There_is_one_region_(190008-190149)_of_the_genomethat_was_covered_only_by_reads_from_the_454_sequencing_machine.COMPLETENESS:_full_length. NA 24-JAN-2012 Shewanella_loihica_PV-4_chromosome,_complete_genome. NA Shewanellaceae_Ivanova_et_al._2004 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Shewanella_loihica_A3QGE9_SHELP.gb Shewanella_MacDonell_and_Colwell_1986 127510935 Unpublished NA NC_009092 NA NA Alteromonadales_Bowman_and_McMeekin_2005 purple_photosynthetic_bacteria_and_relatives NA 1317 NA genomic_DNA NA PV-4 NA Shewanella_loihica_Gao_et_al._2006 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 323850 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Alteromonadales,_Shewanellaceae,_Shewanella Complete_sequence_of_Shewanella_loihica_PV-4 NA NC_009092.1 ATGAAATCAAAGAAGAGTTTCGATGATTTGGAGTTTACTCCGCTTCATAAAAAAATAATGTTATGGGGAAGTGGGGGTCCTTTCCTCGATGGTTATGTGTTAGTGATCATAGGGTTAGCCCTACAACAACTCACACCTGCCCTAGAGCTAGATGCCCAATGGATAGGACTAGTCGGAGCCGCAACTCTGGTCGGCCTGTTTATCGGTACGGCGCTATTTGGTTATGTCGCCGATCTTTTTGGGCGCAAACTGATGTTCATGATAGATATCATTGCCATCGCCGTCCTCTCCTTCGCCACCATGTTCATCTCCTCCCCCATAGAACTGGTGATATTGCGTTTCTTGATTGGCATAGTCATAGGCGCCGACTACCCTATCGCCACCTCTATGGTCGCCGAATTTTCCCCAACGAAACAACGCGCCTTTACCATGGGCTTCATCGCAGCCATGTGGTACGTGGGCGCGACCGCCGCCAATATGGTGGGCTATCTGCTATACGATGTCACCGATGGATGGCGCTGGATGTTTGGCAGCGCTATCATCCCCTGCCTGGTTATCTTGCTCGGACGCTTCCATCTGCCGGAATCTCCCAGGTGGCTGCTGAAGAAAGGCCGTATCGAAGAGTGCAAACAGGTGATGCACCAATTTTTCGGCAAAGATATCAGCCTGAATTTTGAGACTGCAGAGCAGACTAAATACAGCAAGTTATTCGAGGCCGTTTATTTAAAACGTATCCTGTTTGTCGGCATTATCTGGACCTGCCAGGTGATCCCTATGTTCGCCATATATACCTTTGGCCCGGAGATCATCGAACTCTTGGGCTTCACCGACGGTAAAGATGCCGCCCTGGGTAATATTGTCATCAGCATCTTCTTCATGGCGGGCTGTATTCCGGCCATGTACTGGCTTAACTCCATAGGTCGTCGCCCCCTGCTCATCGGCAGCTTCGCCATCATGACAGCCGCCCTGGCGGTGCTGGGAATAGTGGATACCCCGAGTATCTGTCTGATTGTTGCCGCATTTGCCATCTACGCCTTCTTCTCCGGAGGCCCGGGGATCTTGCAATGGCTATATCCTAACGAACTGTTTCCGACAGAGATACGCGCCTCGGCGGTTGGTGCCGTGATGTCTTTCAGCCGTATAGGCACTATCGTCTCCACCTATGGCTTACCACTGTTTATGGCGACCTATGGCATCTCGGCTACCCTGCTAGTTGGCGCGGCGATCTCCCTGCTTGGGCTACTGGTTTCCATCTTTATGGCGCCGGAAACCAAGGGGCTGACACTGGAGACCACCAGCTCGGTGGACTTTGAGTAG > 1059 SbBS512_E3928 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690;_match_to_protein_family_HMM_TIGR00883 MFS_transporter,_metabolite:H+_symporter_family_protein YP_001882212.1 11 MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATAAVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLLTMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRALYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVSLHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFSTAAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIILFALFAFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSILGASVAPYIAAWLQTNYGLGAVGLYLAAMAGLTLIALLLTHETRHQSL gamma_subgroup Shigella_boydii_CDC_3083-94 Shigella_boydii_CDC_3083-94 NC_010658 3655575..3656897 NA NA 0:1323 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001063.Source_DNA_and_bacteria_available_from_Jacques_Ravel,_Institute_forGenome_Sciences,_Department_of_Microbiology_and_Immunology,University_of_Maryland_School_of_Medicine;jravel@som.umaryland.edu.COMPLETENESS:_full_length. NA 24-JAN-2012 Shigella_boydii_CDC_3083-94_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Shigella_boydii_B2U4J1_SHIB3.gb Shigella_Castellani_and_Chalmers_1919 187730020 Submitted_(07-MAY-2008)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_010658 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1323 NA genomic_DNA NA BS512;_CDC_3083-94 NA Shigella_boydii_Ewing_1949 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 344609 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Shigella Direct_Submission NA NC_010658.1 ATGCAAGCAACAGCCACAACACTCGACCACGAGCAAGAATACACGCCGATCAACTCGCGTAATAAAGTCCTTGTCGCCTCTCTCATTGGCACAGCCATTGAGTTCTTCGACTTTTACATTTACGCCACTGCGGCCGTTATTGTGTTTCCGCATATCTTCTTCCCGCAGGGCGATCCTACGGCAGCAACGCTACAGTCGCTCGCCACCTTCGCCATCGCCTTCGTCGCGCGCCCCATTGGCTCTGCCGTTTTTGGTCATTTTGGCGATCGCGTTGGGCGTAAAGCGACGCTGGTCGCCTCGTTGCTAACGATGGGGATTTCGACCGTGGTGATTGGTCTGCTGCCAGGCTATGCCACGATTGGTATTTTCGCCCCGCTGCTGCTGGCGCTGGCTCGATTTGGTCAGGGTCTGGGCTTAGGTGGTGAATGGGGCGGCGCGGCGCTGCTGGCGACTGAAAACGCCCCACCGCGCAAACGTGCATTGTACGGCTCCTTCCCGCAGCTGGGCGCACCGATTGGCTTCTTCTTTGCCAACGGCACTTTCTTGCTGCTTTCCTGGCTACTGACCGACGAGCAGTTTATGAGCTGGGGCTGGCGTGTGCCATTTATCTTCTCGGCGGTGCTGGTCATTATCGGCCTGTATGTTCGCGTGTCGCTGCATGAGTCGCCGGTGTTTGAGAAAGTCGCTAAAGCGAAAAAACAGGTGAAGATCCCGCTGGGTACGCTGCTGACCAAACATGTTCGCGTAACCGTACTGGGTACGTTCATTATGCTGGCAACCTATACGCTGTTTTACATCATGACGGTCTACTCTATGACCTTTAGTACCGCCGCCGCGCCAGTTGGGCTTGGCCTGCCGCGTAACGAAGTGTTGTGGATGTTGATGATGGCAGTTATTGGTTTTGGCGTGATGGTGCCAGTCGCTGGATTACTGGCTGATGCCTTTGGTCGCCGTAAAAGCATGGTAATCATCACCACGCTGATCATCCTATTCGCGCTATTCGCCTTTAACCCTTTGCTCGGTTCTGGCAACCCGATTCTGGTTTTTGCCTTCCTGCTGCTGGGGTTAAGTCTGATGGGGCTGACCTTCGGTCCGATGGGCGCGCTGTTACCAGAGCTGTTCCCGACAGAAGTGCGTTACACCGGAGCATCGTTCTCTTACAACGTATCGTCGATTCTCGGGGCTTCCGTTGCGCCGTATATCGCAGCCTGGTTGCAGACTAACTACGGGTTAGGTGCGGTGGGGTTATATCTGGCGGCGATGGCTGGCTTGACGTTAATCGCCCTGCTGCTGACCCATGAGACGCGACATCAGTCGTTGTAA > 1060 SFxv_1740 NA Inner_membrane_metabolite_transport_protein_ydfJ ADA73946.1 11 MLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL gamma_subgroup Shigella_flexneri_2002017 Shigella_flexneri_2002017 CP001383 1639051..1640061 Ye,C.,_Lan,R.,_Xia,S.,_Zhang,J.,_Sun,Q.,_Zhang,S.,_Jing,H.,_Wang,L.,_Li,Z.,_Zhou,Z.,_Zhao,A.,_Cui,Z.,_Cao,J.,_Jin,D.,_Huang,L.,_Wang,Y.,_Luo,X.,_Bai,X.,_Wang,Y.,_Wang,P.,_Xu,Q._and_Xu,J. NA 0:1011 NA NA 18-FEB-2010 Shigella_flexneri_2002017,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Shigella_flexneri_D2AFP3_SHIF2.gb Shigella_Castellani_and_Chalmers_1919 281599365 J._Clin._Microbiol._(2009)_In_press NA CP001383 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 19955273 1011 NA genomic_DNA NA 2002017 NA Shigella_paradysenteriae NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 591020 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Shigella Emergence_of_a_new_multidrug_resistance_serotype_X_variant_in_an_epidemic_clone_of_Shigella_flexneri NA CP001383.1 TTGCTGGTGACGCTGCGTATTATTCAGGGATTGGGTGCAGGTGCGGAAATTTCCGGTGCCGGTACGATGCTGGCGGAATATGCGCCAAAAGGTAAGCGCGGAATTATCTCCTCATTTGTGGCTATGGGAACTAACTGCGGCACCTTAAGCGCAACGGCAATCTGGGCCTTTATGTTCTTCATTCTCAGTAAAGAGGAACTGCTGGCGTGGGGATGGCGTATACCGTTCCTGGCGAGCGTTGTCGTGATGGTCTTTGCTATCTGGTTGCGTATGAATCTGAAAGAAAGCCCGGTCTTTGAGAAGGTTAACGACAGCAACCAACCGACAGCAAAACCTGCACCTGCTGGTAGCATGTTCCAGAGCAAATCCTTCTGGCTGGCAACAGGGCTGCGTTTTGGTCAGGCGGGTAACTCCGGTTTAATTCAGACTTTCCTTGCAGGCTATTTAGTACAGACGTTATTGTTTAACAAAGCAATTCCAACAGATGCATTGATGATCAGTTCGATTCTCGGCTTTATGACCATTCCGTTCCTTGGTTGGTTATCCGATAAAATTGGTCGCCGGATCCCGTATATTATTATGAATACCTCTGCGATTGTGCTGGCGTGGCCAATGCTTTCTATCATCGTAGATAAAAGCTATGCCCCGAGCACCATTATGGTTGCACTGATTGTGATTCATAACTGTGCGGTGCTGGGATTATTTGCTCTGGAAAACATTACCATGGCAGAAATGTTCGGCTGTAAAAACCGCTTCACCCGGATGGCTATTTCAAAAGAAATTGGTGGTCTTATCGCTTCCGGTTTTGGTCCTATCCTGGCGGGTATTTTCTGCACCATGACGGAATCCTGGTATCCGATCGCCATTATGATCATGGCATATTCAGTGATTGGTTTAATCTCTGCGCTGAAAATGCCAGAGGTGAAAGACCGTGATTTAAGTGCGCTGGAAGACGCTGCGGAAGATCAACCGCGTGTTGTAAGAGCTGCGCAACCTTCCAGAAGTCTGTAA > 1061 S3477 residues_1_to_506_of_506_are_89.72_pct_identical_to_residues_1_to_506_of_506_from_Escherichia_coli_K-12_:_B3224 sialic_acid_transporter NP_838726.2 11 MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLACGFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILYRGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNDLVKTKS gamma_subgroup Shigella_flexneri_2a_str._2457T Shigella_flexneri_2a_str._2457T NC_004741 3348262..3349752 Wei,J.,_Goldberg,M.B.,_Burland,V.,_Venkatesan,M.M.,_Deng,W.,_Fournier,G.,_Mayhew,G.F.,_Plunkett,G._III,_Rose,D.J.,_Darling,A.,_Mau,B.,_Perna,N.T.,_Payne,S.M.,_Runyen-Janecky,L.J.,_Zhou,S.,_Schwartz,D.C._and_Blattner,F.R. NA 0:1491 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE014073.COMPLETENESS:_full_length. NA 26-JAN-2012 Shigella_flexneri_2a_str._2457T,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Shigella_flexneri_E3Y4T0_SHIFL.gb Shigella_Castellani_and_Chalmers_1919 30061571 Infect._Immun._71_(5),_2775-2786_(2003) NA NC_004741 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 12704152 1491 NA genomic_DNA NA 2457T NA Shigella_paradysenteriae NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 198215 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Shigella Complete_genome_sequence_and_comparative_genomics_of_Shigella_flexneri_serotype_2a_strain_2457T NA NC_004741.1 TTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCAAATGGCACGGCACCGCTAAATGGTTTGCCGTCGATAGCGTCATGAGTACGCAATGCTTCCGGGCGCAGCCAACGCTGAACGCGGGAAGGCATATCCAGACCAATCAGCAGGATCACCACAAATGTCAGGCTGAACGAGAGCGATGCCAGCGCAGTACCCAGATCCAGACGTTGAGCGATCAACGCGCCGATGATTGGGGCCAGTGCGCCACCCAATGCGCCAACGTTGTAGGTAAAGCCCAGGCCCGCTGCACGCTGGTCGGTATCGAAATAACCGCCAATCAGTTTCGGTAAGATCCCGGCGATCCCTTGTCCAAGCATTTGCTGGAAGAACAGTAACAGACCGAGCACCCAGACGTTTGCGCCGCCAATCGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACGGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCGACAGTATGCGGGTTATAAGCCAGATCGGTTTTCAGATACGTTGGCAGCAGCGCCTGAATCGGCCATGAGTAGAGGAAAGCAAACAACACGACCACCATCAGCATTACGCCCGTTGGCCAGCGTTTACCCGTACTTTGCACCATAAAGCTGATAAAGATTGCGGCGCATAACAGCCCGAGAACAGCGACGATTGCAGCATTTTGCAGGTTACCGGCGAAGCAGAACCACAGCGCAGTAGCCGCCGCCAGTGTCATTACGATATTGGCAATGCGATGTTCACCACGGTAGAGAATATCCACCATTGTGCGTACTGGTGCTTTACCTGCGTGTTTCTCTTTCCAGTCTTCCGCTTCCGGGATGTTTTTACGCAGCCAGAGAGCAAAGATGATTGGCAAAATGCCGATAAAGAACAGCGCACGCCAACCCCAGACCGGAACCACCAGGCTATAGACCTGAGCGGCAACGACGGCCCCCACAGAGAAGCCTGAAATCAAAAAACCACTGGCTTTGTTACGCAGATGTTTTGGCCAGCTTTCAATGACATAGGTGGCGCTGGAACCGTATTCACCCGCCATCCCCATGCCGATGACCAGACGAGCGATAAACATGGTGATGTAGCCTGGCGCAAAGCCGCAGGCCAGCGTCCCGGCCGAGAAGAGAACGATGCTGGTGACCATTGCCAGACGACGCCCGTAGCGGTCACCCATAGCGCCGAGCATCAGGCCGCCGAACCAGCGAGAGATAAAGGCTGCGGAGATCAGACTTGCCGCCTGCACCGTCGTCAGCCCGAATTCACCCTGTACTTCGGTGAGTACCAGGGCGATTAAAACGAAATCAAAACCGTCAAGCAGATATCCCAACCAGGCAGCGGAAAATGCGCGCCATTGTGCACGGTTGAGATGGCGATACCACGGGATATTCTGGGTTGTAGTACTCAT > 1062 SF1552 Code:_GEPR;_COG:_COG0477 proline_permease NP_707434.1 11 MGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL gamma_subgroup Shigella_flexneri_2a_str._301 Shigella_flexneri_2a_str._301 NC_004337 1583809..1584789 Jin,Q.,_Yuan,Z.,_Xu,J.,_Wang,Y.,_Shen,Y.,_Lu,W.,_Wang,J.,_Liu,H.,_Yang,J.,_Yang,F.,_Zhang,X.,_Zhang,J.,_Yang,G.,_Wu,H.,_Qu,D.,_Dong,J.,_Sun,L.,_Xue,Y.,_Zhao,A.,_Gao,Y.,_Zhu,J.,_Kan,B.,_Ding,K.,_Chen,S.,_Cheng,H.,_Yao,Z.,_He,B.,_Chen,R.,_Ma,D.,_Qiang,B.,_Wen,Y.,_Hou,Y._and_Yu,J. NA 0:981 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE005674.WARNING_On_Aug_26,_2011_this_sequence_was_replaced_bygi:344915202.COMPLETENESS:_full_length. NA 11-MAR-2011 Shigella_flexneri_2a_str._301,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Shigella_flexneri_Q83RF0_SHIFL.gb Shigella_Castellani_and_Chalmers_1919 24111450 Nucleic_Acids_Res._30_(20),_4432-4441_(2002) NA NC_004337 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 12384590 981 NA genomic_DNA NA 301 NA Shigella_paradysenteriae NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 198214 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Shigella Genome_sequence_of_Shigella_flexneri_2a:_insights_into_pathogenicity_through_comparison_with_genomes_of_Escherichia_coli_K12_and_O157 NA NC_004337.1 TTGGGTGCAGGTGCGGAAATTTCCGGTGCCGGTACGATGCTGGCGGAATATGCGCCAAAAGGTAAGCGCGGAATTATCTCCTCATTTGTGGCTATGGGAACTAACTGCGGCACCTTAAGCGCAACGGCAATCTGGGCCTTTATGTTCTTCATTCTCAGTAAAGAGGAACTGCTGGCGTGGGGATGGCGTATACCGTTCCTGGCGAGCGTTGTCGTGATGGTCTTTGCTATCTGGTTGCGTATGAATCTGAAAGAAAGCCCGGTCTTTGAGAAGGTTAACGACAGCAACCAACCGACAGCAAAACCTGCACCTGCTGGTAGCATGTTCCAGAGCAAATCCTTCTGGCTGGCAACAGGGCTGCGTTTTGGTCAGGCGGGTAACTCCGGTTTAATTCAGACTTTCCTTGCAGGCTATTTAGTACAGACGTTATTGTTTAACAAAGCAATTCCAACAGATGCATTGATGATCAGTTCGATTCTCGGCTTTATGACCATTCCGTTCCTTGGTTGGTTATCCGATAAAATTGGTCGCCGGATCCCGTATATTATTATGAATACCTCTGCGATTGTGCTGGCGTGGCCAATGCTTTCTATCATCGTAGATAAAAGCTATGCCCCGAGCACCATTATGGTTGCACTGATTGTGATTCATAACTGTGCGGTGCTGGGATTATTTGCTCTGGAAAACATTACCATGGCAGAAATGTTCGGCTGTAAAAACCGCTTCACCCGGATGGCTATTTCAAAAGAAATTGGTGGTCTTATCGCTTCCGGTTTTGGTCCTATCCTGGCGGGTATTTTCTGCACCATGACGGAATCCTGGTATCCGATCGCCATTATGATCATGGCATATTCAGTGATTGGTTTAATCTCTGCGCTGAAAATGCCAGAGGTGAAAGACCGTGATTTAAGTGCGCTGGAAGACGCTGCGGAAGATCAACCGCGTGTTGTAAGAGCTGCGCAACCTTCCAGAAGTCTGTAA > 1063 SSON_4053 Code:_GEPR;_COG:_COG0477 hypothetical_protein YP_312805.1 11 MKTERKNEHYLALQQAFDAPWPGPVGELVTLEKGNIHLQIYPHDGARITSLKAFGSEVLRQWQPQRRAFQYGCFPMVPWAGRLGNATLNAGGQCYSLPANKPPHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEVIQTFLLENDALVLQLEVHSYADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRIFPQAGPWDDCFGFYNGVKVKLLWPGKLAMTMISSANSLVVFDKQPDATCINPLTQAPNAINLTPELVTPDRPLVIETRWQFTPES gamma_subgroup Shigella_sonnei_Ss046 Shigella_sonnei_Ss046 NC_007384 4286333..4287682 Yang,F.,_Yang,J.,_Zhang,X.,_Chen,L.,_Jiang,Y.,_Yan,Y.,_Tang,X.,_Wang,J.,_Xiong,Z.,_Dong,J.,_Xue,Y.,_Zhu,Y.,_Xu,X.,_Sun,L.,_Chen,S.,_Nie,H.,_Peng,J.,_Xu,J.,_Wang,Y.,_Yuan,Z.,_Wen,Y.,_Yao,Z.,_Shen,Y.,_Qiang,B.,_Hou,Y.,_Yu,J._and_Jin,Q. NA 1339:>1350 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000038.COMPLETENESS:_full_length. NA 23-JAN-2012 Shigella_sonnei_Ss046_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Shigella_sonnei_Q3YV93_SHISS.gb Shigella_Castellani_and_Chalmers_1919 74310614 Nucleic_Acids_Res._33_(19),_6445-6458_(2005) NA NC_007384 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 16275786 1350 NA genomic_DNA NA Ss046 NA Shigella_sonnei_(Levine_1920)_Weldin_1927 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 300269 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Shigella Genome_dynamics_and_diversity_of_Shigella_species,_the_etiologic_agents_of_bacillary_dysentery NA NC_007384.1 ATGTCTGAAAAGTTACCCGCACCGCGTGAAGGGCTTTCCGGTAAAGCCATGAGACGTGTCGTTATGGGCAGTTTCGCAGGCGCGTTAATGGAATGGTATGACTTCTTTATTTTTGGCACGGCAGCAGGACTGGTATTTGCACCGCTGTTTTATCCAGACAGCGATCCTTTTATAGGTCTTATAGCCGCCTTTGCGACCTTTGGTGTCGGTTTTCTGACTCGTCCTTTAGGTGGCATCGTCTTTGGTCATTTTGGCGATAAAATCGGGCGAAAAATAACACTTATCTGGACGCTGGCTATTGTCGGTTGCTCCACATTTTTGATTGGTTTTATTCCGACGTATCAGGAAATTGGCATTTGGGCACCGCTTGTATTAATGGTGCTGCGTTTGATTCAGGGCTTTGGTCTTGGTGGCGAGTACGGCGGAGCGGCATTGATGACCATAGAATCAGCGCCCGAATCCCGACGCGGATTTTTAGGTTCACTCCCGCAAACGGCTGCGTCTGTGGGTATTATGCTGGCAACCGGTATTTTTGCTCTCTGTAACCATTTTCTTACTTCGGAGCAGTTTCTCTCCTGGGGATGGCGCATTCCGTTTTGGCTTTCTGCGGTGATGTTGATCGTTGGGCTGTTTATCCGCCTGCATACCGAAGAAACACTGGATTTTCAAAAGCAAAAAACGACGAATAATAAAGAAAAGTCCGTTCCTCCGTTGATTGAATTATTCAAAAAACATCCACGAAATATTTTATTGGCACTGGGTGCGAGGCTGGCGGAAAGTGTCTCCTCTAATATTATTAACGCCTTTGGTATTGTCTATATTTCCAGCCAATTAGCATTGTCGCGAGATATTCCCCTGACGGGTATGTTGATTGCCTCGGCGATCGGTATTTTCAGTTGTCCATTGGTTGGATGGTTATCAGATCGTATAGGTCAAAAAAGTCTGTATTTGTCGGGAGCAGGATTTTGTGTCCTGTTCGCGTTTCCTTTCTTCTTATTACTGGATAGCAAAAGTACGCTCATCATCTGGTGCAGTATGATCCTCGGCTACAACTTAGGTCCGACGATGATGTTTGCCGTGCAGCCAACACTTTTCACCCGCATGTTCGGTACCAAAGTACGATATACCGGCCTTTCTTTTGCTTATCAATTTTCCGCGATTCTTGGCGGACTAAGCCCCCTTATCGCCTCAAGTTTGCTGGCGCTAGGGGGAGGAAAACCGTGGTATGTCGCTCTGTTTTTATTTGCTGTCTCAGTTCTTTCCTTTGTTTGCGTCTGGCTGATTGAGCCGACCGATGAACAAGAAACCGCTTCTTACCGCTACATCAGGGAACAATCTCATGAAAACTGA > 1064 SSON_1067 Code:_GEPR;_COG:_COG0477 transport_protein YP_310028.1 11 MSITFLFSAIASPFWGGLADRKGRKLMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPMAGGLLADSYGLRPVFFITASVLILCFFVTLFCIREKFQPISKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNVAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSYVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRRRIPQVSN gamma_subgroup Shigella_sonnei_Ss046 Shigella_sonnei_Ss046 NC_007384 1147017..1148066 Yang,F.,_Yang,J.,_Zhang,X.,_Chen,L.,_Jiang,Y.,_Yan,Y.,_Tang,X.,_Wang,J.,_Xiong,Z.,_Dong,J.,_Xue,Y.,_Zhu,Y.,_Xu,X.,_Sun,L.,_Chen,S.,_Nie,H.,_Peng,J.,_Xu,J.,_Wang,Y.,_Yuan,Z.,_Wen,Y.,_Yao,Z.,_Shen,Y.,_Qiang,B.,_Hou,Y.,_Yu,J._and_Jin,Q. NA 0:1050 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000038.COMPLETENESS:_full_length. NA 23-JAN-2012 Shigella_sonnei_Ss046_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Shigella_sonnei_Q3Z369_SHISS.gb Shigella_Castellani_and_Chalmers_1919 74310614 Nucleic_Acids_Res._33_(19),_6445-6458_(2005) NA NC_007384 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives 16275786 1050 NA genomic_DNA NA Ss046 NA Shigella_sonnei_(Levine_1920)_Weldin_1927 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 300269 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Shigella Genome_dynamics_and_diversity_of_Shigella_species,_the_etiologic_agents_of_bacillary_dysentery NA NC_007384.1 TCAGTTCGATACCTGGGGTATTCGACGACGACGTAGACTGTTCCATGAATAGACTGCGTTGAATAACACTACGCCAGCGGTGACGAGAAATACCGCTCTGAAACCGTAGTTCGCTGAAATCGCTGCTCCCATCAATGGTCCGGTAACGTTGCCAATATCACGAAACGATTGGTTATAGCTGAAGATACGTCCGGCGATTTGGTTGCTCGAGTTATAAACTAACAGTGTCTGTACGGCGGGGAGTAGTGCACCATCGGCGGCACCGAGCAAAAAACGTAAAATCCCAAGTTGCAATGGCGTCTGAACGTAAGACATTGGGATCAACAGCAGTACAGAAAAGATCAGCGCCGTAATCAGGATCTTTTCGGGTCCGATTCGATCGCCAAGTTTGCCGAGTCGTGGTGCACTTAGCAGAGCCGCCACGCCTGGCACCGAGGCGATCATGCCACTGATAAAGGCGACGTTACTGACGTTACCCGCCAGTTCGCGGACATACAGCGTCAGAATGGGGGCAATTGAGCCCGTCGCCACCTGGATGATTAACGTAGTGACAAACAGGCTGAGTACCAGTTTCGGGTTTTTAAGTGATGTCACCACTTCCCGCATGTGCAGCATCTCTTTTTTGCTGATCGGCTGGAATTTTTCTCTTATGCAAAACAGGGTGACGAAAAAGCAGAGTATGAGCACACTGGCGGTAATAAAGAATACCGGACGTAAGCCGTAGCTATCGGCGAGCAGGCCGCCAGCCATTGGGCCGAGCAACGCACCACTAACGCCGCCTGTGGAGAGCGTACCCAGCGCCCAGCCGCTTTTATTACGCGGTACTTGTGTGGCGATAAGAGCATTAGCGTTGGGGACAAATCCGCCAAGTAACCCAAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCACGATGCCCATGCCGAGGGCAGAGCGTAATAGCATGAGTTTTCGGCCTTTACGGTCGGCGAGTCCACCCCAAAACGGTGAGGCGATGGCCGAAAATAAAAATGTAATGCTCAT > 1065 SCH4B_4562 identified_by_match_to_protein_family_HMM_PF07690 major_facilitator_superfamily_protein EEW56838.1 11 MLQVLSSAWALLLGIGLLMLGNGLQGTLLGVRGGIEGYSTLTMSLVMSTYFVGLLLGSWVAPGMIRRVGHVRVFAALASLISAVMVIYPALPNPFVWMLGRLIVGFCFSGVYVTAESWLNNAADNENRGKALSLYMIVMTLGLVAAQGFILIGDPAGYLPFVIASIAVSISFAPILLSISPTPAFDTAKRMTLRELMQASPLGCVGMFLIGGVFSAQFGMSAVYATEAGLKLHQVSLFAASFYVGALFMQFPLGFLSDRMDRRVLIMFVAGIAGVTSVMAMMLSGSFILLLIAAFTIGGLINPLYSLLLAHTNDFLDHDDMASASGGLIFINGLGACSGPVIIGWLMSDDIFGPNGFFLFMAVLLGVLVAYAGYRATQRSTIPVEETGVMPAMSPSVTSVAVEVAQEYAIETELEEQENAAATG alpha_subgroup Silicibacter_sp._TrichCH4B Silicibacter_sp._TrichCH4B GG703520 659070..660344 Barbeau,K.,_Mann,E.,_Ferriera,S.,_Johnson,J.,_Kravitz,S.,_Beeson,K.,_Sutton,G.,_Rogers,Y.-H.,_Friedman,R.,_Frazier,M._and_Venter,J.C. NA 0:1275 With_funding_from_the_Gordon_and_Betty_Moore_Foundation(www.moore.org),_the_J._Craig_Venter_Institute_(www.jcvi.org)_issequencing,_assembling,_and_auto-annotating_the_genomes_ofapproximately_165_marine_microbes._These_microbes_were_contributedby_collaborators_worldwide,_and_embody_an_array_of_physiologicaldiversity,_including_carbon_fixers,_photoautotrophs,photoheterotrophs,_nitrifiers,_and_methanotrophs._This_work_wasdesigned_to_complement_other_ongoing_research_at_JCVI_and_elsewhereto_characterize_the_microbial_biodiversity_of_marine_andterrestrial_environments_through_metagenomics_profiling_ofenvironmental_samples.Please_be_aware_that_the_annotation_is_done_automatically_withlittle_or_no_manual_curation.Geome_Coverage:_7.2xSequencing_Technology:_Sanger. NA 24-SEP-2009 Silicibacter_sp._TrichCH4B_genomic_scaffold_scf_1113354613207,_whole_genome_shotgun_sequence. NA alpha-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Silicibacter_sp_C9D441_9RHOB.gb Silicibacter_Petursdottir_and_Kristjansson_1999 259344750 Submitted_(07-MAY-2009)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA GG703520 NA NA Rhodobacterales purple_photosynthetic_bacteria_and_relatives NA 1275 NA genomic_DNA NA TrichCH4B NA Silicibacter_sp._TrichCH4B NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 644076 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhodobacterales,_Rhodobacteraceae,_Ruegeria Direct_Submission NA GG703520.1 ATGCTGCAAGTTCTGTCGAGCGCCTGGGCGCTCCTCTTGGGGATTGGCCTTTTGATGCTGGGCAACGGCCTGCAGGGGACGCTCCTGGGCGTGCGCGGTGGCATTGAGGGCTATTCAACCCTGACAATGTCACTGGTCATGTCCACCTATTTTGTTGGTCTGCTGCTGGGTTCATGGGTGGCGCCGGGGATGATCCGGCGTGTGGGCCATGTGCGGGTCTTTGCGGCATTGGCCTCATTGATTTCGGCGGTGATGGTGATCTATCCGGCCCTGCCGAACCCGTTTGTCTGGATGCTGGGCCGTCTGATCGTCGGGTTCTGTTTCTCGGGCGTGTATGTGACAGCGGAGAGCTGGCTCAATAATGCGGCTGACAATGAAAACCGCGGTAAAGCGCTGTCGCTCTATATGATCGTGATGACGCTGGGGCTGGTGGCCGCGCAGGGCTTTATCCTGATCGGTGATCCGGCGGGGTATTTGCCCTTCGTGATTGCCTCTATCGCGGTTTCGATCTCTTTTGCGCCGATTTTGCTGTCGATTTCACCCACCCCCGCCTTTGACACCGCCAAGCGGATGACCCTGCGCGAGCTGATGCAGGCGTCCCCTCTGGGCTGTGTGGGGATGTTCCTGATCGGCGGCGTGTTCTCGGCGCAGTTTGGTATGTCGGCGGTTTACGCCACCGAGGCCGGGCTGAAACTACATCAGGTCTCGCTCTTTGCCGCGAGCTTTTATGTCGGCGCATTGTTCATGCAGTTTCCGCTCGGATTCTTGTCGGACCGGATGGATCGGCGTGTGCTGATCATGTTTGTCGCCGGGATTGCCGGGGTAACCTCGGTGATGGCGATGATGCTGAGCGGTTCTTTCATATTGCTGCTGATTGCTGCCTTTACCATCGGCGGGCTGATCAATCCGCTCTACTCGCTGCTTCTGGCACATACCAATGACTTCCTCGATCATGACGACATGGCCTCGGCCTCGGGCGGTTTGATCTTCATTAACGGTCTGGGGGCCTGTAGCGGTCCGGTGATCATCGGTTGGCTGATGTCAGACGATATCTTTGGCCCCAACGGCTTCTTCCTGTTTATGGCCGTGCTCTTGGGGGTCTTGGTCGCCTACGCCGGGTATCGCGCAACGCAGCGGTCGACCATTCCCGTCGAAGAGACCGGCGTCATGCCTGCCATGAGCCCCTCTGTGACCTCGGTCGCGGTTGAAGTGGCGCAGGAATATGCCATCGAGACGGAACTCGAAGAGCAAGAAAACGCCGCTGCCACAGGCTGA > 1066 SinmeBDRAFT_3849 KEGG:_sme:SMc01869_putative_transport_transmembrane_protein;_TIGRFAM:_metabolite/H+_symporter,_major_facilitator_superfamily_(MFS);_PFAM:_General_substrate_transporter metabolite/H+_symporter,_major_facilitator_superfamily_(MFS) EFN31840.1 11 MTDATTSLSPQDGALHRQAVNSPARVLFASLVGTTIEFFDFYVYATAAVIIFPHLFFPAADPTSAMLQSLATFSIAFFARPLGAVIFGHFGDRIGRKATLVAALMTMGISTVVIGLLPTYSTIGVVAPLLLALCRFGQGLGLGGEWGGAVLLATENAPEGKRSWYAMFPQLGAPIGFILSAGTFLILGEVMSEEAFLAWGWRVPFIASVLLVIVGLYVRLKITETPEFQKAIDKHERVEVPVAAIFRSHKRSLVLGTFVALATFVLFYLMTVFSLSWGTTKLGYSREQFLLVQMTGVVFFGLMIPVSGILSDRFGRRLVLVLTTIGIGVFGLFMAPLLSSGLGGAFVFSIVGLGLMGLTYGPIGAALAAPFPTAVRYTGASMTFNLAGIFGASLAPYIATWLATNYSLGHVGYYLLAAASITLVCLLLSNEEEVSG alpha_subgroup Sinorhizobium_meliloti_BL225C Sinorhizobium_meliloti_BL225C AEDG01000024 45694..47004 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Land,M.L.,_Hauser,L.,_Chang,Y.-J.,_Jeffries,C.,_Brilli,M.,_Bazzicalupo,M.,_Mengoni,A.,_Biondi,E.G._and_Woyke,T.J. NA 0:1311 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4086304Source_DNA_and_Organism_available_from_Emanuele_G._Biondi(emanuele.biondi@unifi.it)Contacts:_Emanuele_G._Biondi_(emanuele.biondi@unifi.it)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)This_WGS_project_has_been_superceded_by_the_complete_chromosome_andplasmids_in_GenBank_records_CP002740-CP002742.##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Ensifer_meliloti_BL225Ccollection_date_::_Missinglat_lon_::_Missingdepth_::_Missingalt_elev_::_Missingcountry_::_Missingenvironment_::_Soil,_Host,_Root_nodule,_Plant_rootnum_replicons_::_Missingref_biomaterial_::_Missingbiotic_relationship_::_Symbiotictrophic_level_::_Missingrel_to_oxygen_::_Aerobeisol_growth_condt_::_Missingsequencing_meth_::_WGSassembly_::_Newbler_v._2.3finishing_strategy_::_FinishedGOLD_Stamp_ID_::_Gi05779Source_of_Isolate_::_Biondi,_Emanuele_(Universita_di_Firenze)Cell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileTemperature_Optimum_::_25_-_30CGram_Staining_::_Gram-Symbiotic_Relationship_::_MutualisticDiseases_::_NonePhenotypes_::_Streptomycin_resistant,_Symbiotic##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_41xSequencing_Technology_::_454/Illumina##Genome-Assembly-Data-START##Data-END## NA 13-SEP-2010 Sinorhizobium_meliloti_BL225C_ctg00121,_whole_genome_shotgun_sequence. NA Rhizobiaceae_Conn_1938 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sinorhizobium_meliloti_E0JIZ1_RHIME.gb Sinorhizobium_Chen_et_al._1988_emend._De_Lajudie_et_al._1994 306901196 Unpublished NA AEDG01000024 NA NA rhizobacteria purple_photosynthetic_bacteria_and_relatives NA 1311 NA genomic_DNA NA BL225C NA Sinorhizobium_meliloti_(Dangeard_1926)_De_Lajudie_et_al._1994 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 698936 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Rhizobiales,_Rhizobiaceae,_Sinorhizobium/Ensifer_group,_Sinorhizobium The_draft_genome_of_Sinorhizobium_meliloti_BL225C NA AEDG01000024.1 ATGACAGACGCGACAACCTCGCTGTCGCCGCAGGATGGTGCGTTGCATCGGCAGGCCGTGAACTCCCCTGCCCGGGTGCTGTTCGCCAGCCTCGTCGGCACGACGATCGAATTCTTCGACTTCTATGTCTATGCGACCGCAGCGGTGATCATCTTCCCGCACCTCTTCTTCCCTGCAGCCGATCCGACCTCGGCAATGCTGCAGTCCCTCGCCACCTTCTCGATCGCCTTCTTCGCCCGCCCGCTCGGCGCCGTGATCTTCGGTCACTTCGGCGACAGGATCGGCCGCAAGGCGACGCTCGTCGCCGCGCTGATGACCATGGGCATCTCGACGGTCGTCATCGGCCTGTTGCCCACCTATTCGACGATCGGCGTCGTGGCACCGCTGCTGCTTGCCCTCTGCCGCTTCGGCCAGGGCCTCGGCCTCGGCGGCGAATGGGGCGGCGCGGTTTTGCTCGCCACCGAGAATGCGCCTGAAGGCAAGCGGAGCTGGTACGCCATGTTCCCGCAACTCGGCGCGCCGATCGGCTTCATCCTGTCGGCCGGAACCTTCCTCATCCTCGGCGAGGTCATGAGCGAAGAGGCCTTCCTCGCCTGGGGCTGGCGCGTTCCCTTCATCGCCAGCGTGCTGCTCGTGATCGTCGGCCTCTATGTCCGCCTGAAGATCACCGAAACGCCGGAATTCCAGAAGGCGATCGACAAGCACGAGCGCGTCGAGGTGCCGGTCGCCGCGATCTTCCGCTCGCACAAGCGAAGCCTCGTACTCGGCACCTTCGTGGCGCTCGCGACCTTCGTCCTGTTCTATCTGATGACCGTCTTCTCGCTCTCCTGGGGCACGACCAAGCTCGGCTATTCGCGCGAACAGTTCCTCCTCGTACAGATGACGGGCGTCGTCTTCTTCGGCCTGATGATCCCCGTCTCCGGCATCCTTTCGGACCGCTTCGGCCGCCGTCTCGTGCTGGTACTGACGACGATCGGGATCGGCGTTTTCGGCCTCTTCATGGCACCGCTCCTGTCATCCGGTCTCGGCGGGGCCTTCGTCTTCTCGATCGTCGGCCTCGGCCTGATGGGCCTCACCTACGGGCCGATCGGCGCCGCACTGGCCGCCCCCTTCCCGACCGCAGTGCGCTACACCGGCGCCTCGATGACCTTCAACCTCGCCGGCATCTTCGGCGCGTCGCTGGCGCCCTACATCGCCACCTGGCTCGCGACCAATTACAGCCTCGGCCATGTCGGCTACTATCTGCTGGCGGCGGCTTCGATCACGCTCGTCTGCCTGCTTCTTTCGAACGAGGAAGAGGTCTCGGGCTGA > 1067 SMAC_03310 unnamed_protein_product NA CBI50840.1 NA MNGIKGLGLGLSKASWRLHSLCLLLALGSFVWGYNVGVLASVLAHPGFRETIPGYGPYRRGLITAIYYLGTWLSYVFFSRPAADLLGRRYAAMVGMSVLCVGQALQAAASGSVALSMVICGRVVSGMGTGIVSTSVPLYQSEIAPAKQRGKLVVLNHVGFVAGLASGFWVGYAITFWSDTYGYQSGWRFSVSLSFIPALLFLTGLPFLYESPRWLVEHGRVDEALKALKFYREGSFTPSQIQDELTDIKRNVSAYQATSLKKWTALFTKPSLFSRLWRATLLHFMAQMCGATAMKYYLPDLFRVLGLSPRTSLLAGGIESTLKIGCTVLEMFVIDKVGRRVTLAVGAAIMAFALLINGALPLAYPNNTNRAADYTCVVFIFIYSLGYSMGFGPAAWVYGSEIFPTAARARGLSFAASGGAVGSIIVSQLWPIGIAELGSKIYFFFMAVDLVCVPIIFLLYPETKGRPLEDMEVLFGGYEGRTPSTTSLLLADERDEDDEDEDETPDRPLLGDGRDGRSLAR Sordariomycetes Sordaria_macrospora Sordaria_macrospora CABT01000002 242434..242531 Nowrousian,M.,_Stajich,J.E.,_Chu,M.,_Engh,I.,_Espagne,E.,_Halliday,K.,_Kamerewerd,J.,_Kempken,F.,_Knab,B.,_Kuo,H.C.,_Osiewacz,H.D.,_Poggeler,S.,_Read,N.D.,_Seiler,S.,_Smith,K.M.,_Zickler,D.,_Kuck,U._and_Freitag,M. NA 0:98 The_strings_of_ns_in_this_record_represent_gaps_between_contigs_oruncallable_bases. NA 26-MAY-2010 Sordaria_macrospora_whole_genome_shotgun_sequence_assembly,_scaffold_2. NA Sordariaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sordaria_macrospora_D1Z3J9_SORMK.gb Sordaria 289622505 PLoS_Genet._6_(4),_E1000891_(2010) fungi CABT01000002 NA NA pyrenonmycetes sac_fungi 20386741 98 NA genomic_DNA 5147 k-hell NA Sordaria_macrospora NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5147 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Sordariaceae,_Sordaria De_novo_assembly_of_a_40_Mb_eukaryotic_genome_from_short_sequence_reads:_Sordaria_macrospora,_a_model_organism_for_fungal_morphogenesis NA CABT01000002.1 ATGAACGGAATCAAGGGCTTAGGTCTGGGCTTATCTAAAGCCTCGTGGCGCTTGCATTCTCTTTGTCTGTTGCTTGCTCTTGGCTCATTTGTTTGGGG > 1068 SMAC_03597 unnamed_protein_product NA CBI52599.1 NA MYKIGNIYFIAAVAVIGGALFGFDISSMSAIISTQPYLCQFNQLGRNEKNLCIGPTNDVQGGITAAMPGGSWLGALCSGFVSDTFGRKRSIQIGSVIWIIGSIVVCASVNIPMLVVGRIINGFSVGICSAQVPVYISELALPSKRGRLVGFQQWAITWGILIMFFICYGCSFMRTAAFRVPWGLQAIPAALLFLGLIFLPESPRWLCKKDRWDEAKEVLTLVHGKGDPNSPWVHREMQEIRQMVEFERANADVSYFELLKPNMINRTSIGVFTQIWSQLTGMNVMMYYITYVFTMAGLADGSENAVLLPSGIQFVINVVMTIPALLWMDRWGRRPTLLVGAFFMCLWLCVNAGLFAVYSRPARPGEFTSPAESMAITGAPAKAIIASTYLFVASFAPTWGPVSWTYPPELYPLRLRGKAVALCTSANWAFNFALAYFVPPAFANITWKTYAIFATFCAAMFIHVFFMFPETANKPLEEVEEIFDDTKPGAIKYIGTPAWKTRNTRNLTLKQEHNDTLSSEEKAGFEEHAHKETTGR Sordariomycetes Sordaria_macrospora Sordaria_macrospora CABT01000009 382129..382271 Nowrousian,M.,_Stajich,J.E.,_Chu,M.,_Engh,I.,_Espagne,E.,_Halliday,K.,_Kamerewerd,J.,_Kempken,F.,_Knab,B.,_Kuo,H.C.,_Osiewacz,H.D.,_Poggeler,S.,_Read,N.D.,_Seiler,S.,_Smith,K.M.,_Zickler,D.,_Kuck,U._and_Freitag,M. NA 0:>143 The_strings_of_ns_in_this_record_represent_gaps_between_contigs_oruncallable_bases. NA 26-MAY-2010 Sordaria_macrospora_whole_genome_shotgun_sequence_assembly,_scaffold_9. NA Sordariaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sordaria_macrospora_D1Z8P9_SORMK.gb Sordaria 289620755 PLoS_Genet._6_(4),_E1000891_(2010) fungi CABT01000009 NA NA pyrenonmycetes sac_fungi 20386741 143 NA genomic_DNA 5147 k-hell NA Sordaria_macrospora NA complement Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5147 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Sordariaceae,_Sordaria De_novo_assembly_of_a_40_Mb_eukaryotic_genome_from_short_sequence_reads:_Sordaria_macrospora,_a_model_organism_for_fungal_morphogenesis NA CABT01000009.1 TTATCTGCCAGTGGTTTCCTTGTGGGCATGCTCCTCAAAGCCCGCCTTCTCCTCCGACGATAGAGTATCGTTGTGCTCCTGCTTGAGCGTAAGGTTGCGGGTGTTTCTCGTCTTCCAAGCGGGCGTGCCGATGTACTTGATGG > 1069 SMAC_00896 unnamed_protein_product NA CBI53853.1 NA MGAPQKTAGGNNAYHNFHNDFLHIKDPNERRRLALAEVDRAPFGWYHVRAVAVAGVGFFTDSYDIFTVSLLTLMVGIVYFPGEGKMPHNSDTAIKLATSAGTVIGQVGFGAAADIFGRKNMYGLELLFIIFATLAQALTSGSPSVNIIGIIIFWRVLMGVGIGGDYPLSSIITSEFATTKWRGAMMGAVFAMQGLGQLAAALVMLFVTLGFKKSLEVAPTLGTCTGDCAVAVDKMWRTVIGLGAVPGCVALYYRLTIPETPRYTFDVKKDVEQASDDIEAFKKGEPKGQPDEITRIATQQVAEKKMEIPKASWSDFFRHYSKRKNAMLLAGTALSWCFLDIAYYGVSLNNATILDVIGYSTTGAKNTYEILYNTAVGNMIIVLAGAVPGYWVTVFTVDIIGRKPIQFMGFGILTVLFVVMGFAYKHLAPNALLAIFVLAQFFFNFGPNATTFIVPGEVFPTRYRSTSHGLSAAMGKIGSIIGQGAIAPLRTRGAVPGGNPNPWMNHVLQIYALFMLLGVGTTFLIPETKRKTLEELAGEYDMSDEEEAQRNATAVIENKTEAPTSSGAVHV Sordariomycetes Sordaria_macrospora Sordaria_macrospora CABT01000017 1017951..1019192 Nowrousian,M.,_Stajich,J.E.,_Chu,M.,_Engh,I.,_Espagne,E.,_Halliday,K.,_Kamerewerd,J.,_Kempken,F.,_Knab,B.,_Kuo,H.C.,_Osiewacz,H.D.,_Poggeler,S.,_Read,N.D.,_Seiler,S.,_Smith,K.M.,_Zickler,D.,_Kuck,U._and_Freitag,M. NA 0:>1242 The_strings_of_ns_in_this_record_represent_gaps_between_contigs_oruncallable_bases. NA 26-MAY-2010 Sordaria_macrospora_whole_genome_shotgun_sequence_assembly,_scaffold_17. NA Sordariaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sordaria_macrospora_D1ZCA3_SORMK.gb Sordaria 289619310 PLoS_Genet._6_(4),_E1000891_(2010) fungi CABT01000017 NA NA pyrenonmycetes sac_fungi 20386741 1242 NA genomic_DNA 5147 k-hell NA Sordaria_macrospora NA complement Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5147 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Sordariaceae,_Sordaria De_novo_assembly_of_a_40_Mb_eukaryotic_genome_from_short_sequence_reads:_Sordaria_macrospora,_a_model_organism_for_fungal_morphogenesis NA CABT01000017.1 TCAAACGTGGACAGCACCACTACTCGTGGGTGCCTCCGTCTTGTTCTCAATGACAGCGGTCGCATTCCTCTGCGCCTCCTCCTCATCACTCATGTCATATTCGCCCGCCAGCTCCTCGAGCGTCTTCCTCTTAGTCTCCGGAATCAAGAAAGTGGTGCCGACGCCGAGCAACATGAACAGCGCATAGATCTGCAGCACGTGGTTCATCCAAGGGTTGGGGTTTCCACCAGGGACGGCGCCACGGGTGCGCAGGGGAGCGATGGCACCCTGGCCGATGATGGAGCCGATCTTGCCCATGGCAGCGCTCAAGCCGTGCGAGGTAGACCTGTAACGGGTGGGGAAAACCTCGCCGGGGACGATGAACGTGGTGGCGTTGGGGCCAAAGTTGAAGAAGAACTGGGCGAGGACGAAGATGGCGAGCAGAGCGTTGGGCGCGAGGTGCTTGTAGGCGAAGCCCATGACCACGAAGAGGACGGTGAGGATGCCGAAGCCCATGAACTGGATCGGCTTGCGGCCGATGATGTCGACGGTAAAGACGGTGACCCAGTAACCAGGGACGGCGCCGGCAAGGACGATGATCATGTTGCCGACGGCGGTATTGTAGAGGATTTCGTACGTGTTCTTGGCACCGGTGGTGGAGTAGCCGATGACGTCCAAGATGGTGGCGTTGTTGAGCGAGACACCGTAGTAGGCGATGTCGAGGAAGCACCATGAGAGAGCAGTGCCGGCGAGCAGCATGGCGTTCTTGCGCTTGGAGTAGTGGCGGAAGAAGTCGCTCCAGCTGGCCTTGGGGATCTCCATCTTCTTCTCGGCCACCTGCTGGGTGGCGATGCGGGTGATCTCGTCGGGCTGGCCCTTGGGCTCGCCCTTCTTGAAGGCTTCGATGTCGTCGCTGGCCTGCTCAACGTCCTTCTTGACGTCGAAGGTGTAGCGGGGGGTCTCGGGGATGGTCAGGCGGTAGTAGAGCGCGACGCAGCCGGGGACGGCACCCAGACCAATGACTGTACGCCACATCTTATCAACGGCGACGGCACAATCTCCGGTGCAGGTACCCAGAGTAGGAGCAACCTCCAGTGACTTCTTGAAACCGAGTGTAACGAACAACATGACGAGTGCGGCAGCAAGCTGGCCAAGACCCTGCATAGCGAAGACGGCACCCATCATGGCACCTCTCCACTTGGTTGTAGCAAATTCTGAGGTGATAATACTGGAAAGAGGATAGTCTCCACCGATGCCGACACC > 1070 SMAC_04119 unnamed_protein_product NA CBI57006.1 NA MTGAAHVSMLIIGRMLVGYAVGTITGVAPVFGAEIAKVSTVFYVCAWGFFVALWTGVGEGKWHNPNQWRAGFAIQSIPALALGVGVLFISESPRWLCLKGRHEEAEKAFRSYHHNGSNDEWCKEEFRRMQANIALELQARELLKTPAFRKSLFVGSFVWVAAILSGISFIQYFQPAIYATLQYNQGQQLLISGLYGSVAPVACLASLVFVDRIGRKKILVSSASLLSLCYLIITITAAVFPARPGLPTIEAAQRGLIACIFVVSANYSALLGPMTWIIP Sordariomycetes Sordaria_macrospora Sordaria_macrospora CABT01000057 173073..173491 Nowrousian,M.,_Stajich,J.E.,_Chu,M.,_Engh,I.,_Espagne,E.,_Halliday,K.,_Kamerewerd,J.,_Kempken,F.,_Knab,B.,_Kuo,H.C.,_Osiewacz,H.D.,_Poggeler,S.,_Read,N.D.,_Seiler,S.,_Smith,K.M.,_Zickler,D.,_Kuck,U._and_Freitag,M. NA 0:>419 The_strings_of_ns_in_this_record_represent_gaps_between_contigs_oruncallable_bases. NA 26-MAY-2010 Sordaria_macrospora_whole_genome_shotgun_sequence_assembly,_scaffold_57. NA Sordariaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sordaria_macrospora_D1ZLS2_SORMK.gb Sordaria 289616158 PLoS_Genet._6_(4),_E1000891_(2010) fungi CABT01000057 NA NA pyrenonmycetes sac_fungi 20386741 419 NA genomic_DNA 5147 k-hell NA Sordaria_macrospora NA complement Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5147 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Sordariaceae,_Sordaria De_novo_assembly_of_a_40_Mb_eukaryotic_genome_from_short_sequence_reads:_Sordaria_macrospora,_a_model_organism_for_fungal_morphogenesis NA CABT01000057.1 CTACGGAATGATCCAAGTCATTGGGCCCAGAAGAGCTGAGTAGTTGGCCGATACAACAAAGATGCAGGCGATGAGTCCGCGCTGAGCTGCCTCAATTGTTGGTAGCCCTGGTCGAGCCGGAAAGACAGCGGCGGTGATGGTGATAATAAGGTAGCAGAGTGACAAGAGCGAAGCGCTGGAGACCAGGATCTTCTTTCGACCGATGCGATCCACGAACACTAGGGACGCCAGGCACGCCACCGGAGCCACCGATCCATATAATCCGCTTATGAGAAGCTGCTGACCCTGATTGTACTGCAGTGTTGCATAGATGGCCGGTTGAAAATACTGGATGAAGCTGATGCCACTCAGAATCGCGGCCACCCAGACAAAAGATCCGACAAAAAGAGACTTTCTGAAGGCCGGTGTCTTGAGGAGCT > 1071 SMAC_04195 unnamed_protein_product NA CBI57083.1 NA MTDNPEEPLIANSQSTEGDQHNDSHDVEHAHASRGGKQNITPPGLFIWLLTFSAGISGLLFGYDTGVISATLVSIGTSLSHRPLTSLDKSVITSCTSLFALLVLPFASSLADDRGRKRVVLFADTLFIIGALLQAASRTVEMMVVGRSVVGVAIGAASFVTPLYIAELAPATHRGRLVTMNIVFITLGQVVAYVVGWIFGTYGSPETTGWRWMVGLGAVPAVVQVVILLWMPESPRWLVKEGRSEEAREVIARIAAGHDALDPETRREVDAVLKNIEIEVREEAMATRHAVPGAGAGTTSAVNAWMEAMRELFRVRRNKRALAIACLLQGLQQLCGFNSLMYFSATIFTMIGFSEPTLTSLVVAVTNFAFTLVALVLIDRVGRRRILLWSLPFMMAGLVLAGYGFSFIELPDSETSSPTTTGAQGGAIIILTSIMLYVAGYAIGLGNVPWMQSELFSLNVRSVGSGVATATNWSANFVVGLTFLPLMEALSPSWTFVLYAVICAVGYGLIWRVYPETAGLSLEEAATLLEADDWGVR Sordariomycetes Sordaria_macrospora Sordaria_macrospora CABT01000057 526851..527037 Nowrousian,M.,_Stajich,J.E.,_Chu,M.,_Engh,I.,_Espagne,E.,_Halliday,K.,_Kamerewerd,J.,_Kempken,F.,_Knab,B.,_Kuo,H.C.,_Osiewacz,H.D.,_Poggeler,S.,_Read,N.D.,_Seiler,S.,_Smith,K.M.,_Zickler,D.,_Kuck,U._and_Freitag,M. NA 0:187 The_strings_of_ns_in_this_record_represent_gaps_between_contigs_oruncallable_bases. NA 26-MAY-2010 Sordaria_macrospora_whole_genome_shotgun_sequence_assembly,_scaffold_57. NA Sordariaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sordaria_macrospora_D1ZLZ9_SORMK.gb Sordaria 289616158 PLoS_Genet._6_(4),_E1000891_(2010) fungi CABT01000057 NA NA pyrenonmycetes sac_fungi 20386741 187 NA genomic_DNA 5147 k-hell NA Sordaria_macrospora NA forward Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5147 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Sordariaceae,_Sordaria De_novo_assembly_of_a_40_Mb_eukaryotic_genome_from_short_sequence_reads:_Sordaria_macrospora,_a_model_organism_for_fungal_morphogenesis NA CABT01000057.1 ATGACAGACAACCCAGAAGAGCCCTTGATCGCCAACTCCCAGTCGACGGAGGGGGACCAACATAATGACAGCCACGATGTCGAGCACGCGCATGCATCCCGAGGAGGAAAACAGAACATAACACCACCAGGCCTGTTTATATGGCTACTTACATTTTCCGCCGGAATAAGCGGTCTACTATTCGGCT > 1072 SMAC_07404 unnamed_protein_product NA CBI58599.1 NA MTLLALKEDRPTPKAVYNWRVYTCAAIASFASCTIGYDSAFIGTTLALPSFTKEFDFASYTPGALALLQSNIVSVYQAGAFFGSLFAFATSYFMGRRKSLIAFSIVFIIGAAIMLAADGQSRGIAPIIAGRVLAGIGVGGASNMVPIYISELAPPAVRGRLVGIYELGWQIGGLVGFWINYGVNNTMAPTRSQWLIPFAVQLIPAGLLFLGSFWIPESPRWLFANGKREEAMKVLCWMRNLEPTDQYIVEEVSYIDADLERYAREVGKGFWKPFLSLKQRKVQWRFFLGSMLFLWQNGSGINAINYYSPTVFKSIGITGTNTGFLTTGIFGVVKTVLTIIWLLWLVDLAGRRRMLFIGAAGGSLCMWFIGAYIKIAGPGSTKAEDAKLTSGGIAAIFFFYLWTAFYTPSWNGTPWVINSEMFDQNTRSLGQASAAASNWFWNFIISRFTPQMFLKMKYGVYFFFASLMLLSIVFIYFFIPETKSIPLEAMDRLFEIKPVANANKILMAELNFDRGGPEREESSLDEKDRVTQSETAV Sordariomycetes Sordaria_macrospora Sordaria_macrospora CABT01000086 56241..57854 Nowrousian,M.,_Stajich,J.E.,_Chu,M.,_Engh,I.,_Espagne,E.,_Halliday,K.,_Kamerewerd,J.,_Kempken,F.,_Knab,B.,_Kuo,H.C.,_Osiewacz,H.D.,_Poggeler,S.,_Read,N.D.,_Seiler,S.,_Smith,K.M.,_Zickler,D.,_Kuck,U._and_Freitag,M. NA 0:1614 The_strings_of_ns_in_this_record_represent_gaps_between_contigs_oruncallable_bases. NA 26-MAY-2010 Sordaria_macrospora_whole_genome_shotgun_sequence_assembly,_scaffold_86. NA Sordariaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sordaria_macrospora_D1ZRA2_SORMK.gb Sordaria 289614586 PLoS_Genet._6_(4),_E1000891_(2010) fungi CABT01000086 NA NA pyrenonmycetes sac_fungi 20386741 1614 NA genomic_DNA 5147 k-hell NA Sordaria_macrospora NA complement Sordariomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 5147 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Sordariomycetidae,_Sordariales,_Sordariaceae,_Sordaria De_novo_assembly_of_a_40_Mb_eukaryotic_genome_from_short_sequence_reads:_Sordaria_macrospora,_a_model_organism_for_fungal_morphogenesis NA CABT01000086.1 TTAGACTGCGGTCTCGCTCTGTGTCACCCTGTCCTTCTCGTCCAGCGAAGACTCCTCTCGCTCTGGACCTCCCCTGTCGAAGTTGAGCTCGGCCATGAGAATCTTGTTGGCGTTGGCAACAGGCTTGATTTCGAATAAGCGATCCATGGCCTCGAGCGGGATCGACTTGGTCTCGGGGATGAAGAAGTAAATGAACACAATCGACAGCAGCATGAGCGAGGCAAAGAAGAAGTACACGCCGTACTTCATCTTCAAGAACATTTGCGGCGTGAAACGCGAAATGATAAAGTTCCAGAACCAGTTGCTGGCCGCGGCTGATGCCTGACCCAGGGACCGCGTGTTTTGGTCAAACATCTCCGAGTTGATGACCCAAGGTGTGCCGTTCCACGAAGGGGTGTAGAAGGCAGTCCAGAGGTAGAAGAAGAAGATGGCTGCGATACCGCCAGAGGTCAGCTTGGCGTCTTCCGCCTTGGTCGATCCAGGACCGGCAATCTTGATGTAGGCTCCAATGAACCACATGCAGAGCGACCCGCCAGCCGCACCGATGAAGAGCATGCGGCGGCGACCGGCCAGATCGACAAGCCACAGAAGCCAGATGATGGTGAGCACTGTCTTAACGACGCCGAAGATGCCCGTGGTCAAGAAGCCGGTGTTGGTACCGGTAATGCCGATGCTCTTGAAGACCGTGGGGGAGTAGTAGTTGATGGCATTGATACCGCTTCCGTTCTGCCAGAGGAAGAGCATGCTACCAAGGAAAAAGCGCCACTGAACCTTGCGTTGCTTAAGAGACAGGAACGGCTTCCAGAAACCCTTGCCGACCTCTCGGGCATACCGTTCCAGGTCGGCGTCAATGTACGAAACTTCCTCAACAATGTATTGATCGGTGGGCTCGAGGTTGCGCATCCAGCACAATACCTTCATTGCCTCTTCTCTCTTGCCGTTGGCAAAAAGCCACCGCGGAGACTCGGGGATCCAGAAGCTGCCCAAGAACAAGAGGCCGGCAGGGATGAGCTGAACGGCGAAGGGGATTAGCCACTGCGACCTCGTCGGGGCCATGGTGTTGTTGACGCCGTAGTTGATCCAAAATCCGACTAGACCACCAATCTGCCAGCCGAGCTCATAAATGCCAACAAGACGGCCACGAACAGCGGGCGGCGCGAGCTCCGAGATGTAAATGGGTACCATGTTGGAGGCACCTCCAACGCCAATACCAGCCAGCACTCTGCCTGCGATAATCGGAGCAATGCCTCGGCTTTGGCCATCAGCAGCAAGCATAATGGCGGCGCCAATGATGAAGACGATGGAGAAGGCGATGAGAGATTTGCGACGGCCCATGAAGTAACTAGTCGCAAAGGCGAAAAGACTGCCAAAGAAGGCGCCGGCTTGGTAGACCGATACGATGTTGGACTGAAGCAAGGCGAGAGCACCAGGCGTGTAAGAGGCAAAATCGAATTCCTTGGTGAAGGATGGCAACGCAAGCGTGGTGCCAATGAAGGCAGAATCATAGCCGATCGTGCAAGAGGCAAAACTGGCGATCGCCGCGCATGTGTAGACACGCCAGTTATAAACGGCCTTTGGCGTTGGCCTGTCTTCCTTGAGCGCAAGGAGAGTCAT > 1073 SphchDRAFT_0771 PFAM:_acyltransferase_3;_KEGG:_sjp:SJA_C1-15290_putative_acetyltransferase acyltransferase_3 EFN12578.1 11 MENRGHEAHPPGGGRLEWIDVARGIGIVAVVVGHVWTRGGLRDAMYSFHMPLFFLLSGILSRPQSVARFAPRQLASQIRPYAAFLILLVVADQIIETMKGGRPIFHDWPHDLLPILLGGSWLRGPFTIFWFVPCLMMARMFFNIGLARWPDPLDRRWAWAILPCLAAAYAVGKFTSLSPLGALAVPMALVLLWTGAAWQRVAWRRWMVAPLALLSLAGLMGLMPTLNMKAADYGWPLLSMGSAVATSLLLFRLSARIAPLAGWAAAVGRASLVIMYLHVAVIHYLSPYFSKPWLLAQALLIPLAAYYLIRSVPAARRIFL alpha_subgroup Sphingobium_chlorophenolicum_L-1 Sphingobium_chlorophenolicum_L-1 AEDK01000001 843565..844977 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Land,M.L.,_Hauser,L.,_Chang,Y.-J.,_Jeffries,C.,_Turner,P.,_Copley,S.D._and_Woyke,T.J. NA 1409:>1413 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4088230Source_DNA_and_Organism_available_from_Shelly_D._Copley(shelley@cires.colorado.edu)Contacts:_Shelly_D._Copley_(shelley@cires.colorado.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)This_WGS_project_has_been_superceded_by_the_complete_genome_andplasmids_in_(non-WGS)_GenBank_record_CP002798-CP002800.##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Sphingobium_chlorophenolicum_L-1collection_date_::_Missinglat_lon_::_Missingdepth_::_Missingalt_elev_::_Missingcountry_::_USAenvironment_::_Soilnum_replicons_::_Missingref_biomaterial_::_ATCC_39723biotic_relationship_::_Free_livingtrophic_level_::_Missingrel_to_oxygen_::_Missingisol_growth_condt_::_Missingsequencing_meth_::_WGSassembly_::_Newbler_v._2.5finishing_strategy_::_Missing##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_v._2.5Genome_Coverage_::_39xSequencing_Technology_::_454/Illumina##Genome-Assembly-Data-END####Metadata-START##GOLD_Stamp_ID_::_Gi04486Funding_Program_::_DOE-CSP_2010Isolation_Site_::_Sediment,_freshwater_(freshwater_sediments,_artificial_channels)_Minnesotacountry_::_USATemperature_Range_::_MesophileGram_Staining_::_Gram-##Metadata-END## NA 13-SEP-2010 Sphingobium_chlorophenolicum_L-1_ctg53,_whole_genome_shotgun_sequence. NA alpha-4_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sphingobium_chlorophenolicum_E0LHF5_SPHCR.gb Sphingobium_Takeuchi_et_al._2001 306880594 Unpublished NA AEDK01000001 NA NA Sphingomonadales purple_photosynthetic_bacteria_and_relatives NA 1413 NA genomic_DNA NA L-1 NA Sphingomonas_sp._RA2 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 690566 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Sphingomonadales,_Sphingomonadaceae,_Sphingobium The_draft_genome_of_Sphingobium_chlorophenolicum_L-1 NA AEDK01000001.1 ATGTCCGAAGGAAGCGCCGAGCGGGTCAACATGGCCTTCATCGCGGCGATTGTCGCGGTGGCGACCATAGGCGGTTTCATGTTCGGTTATGACAGCGGTGTCATCAACGGCACGCAAAAGGGGTTGGAGGCTGCCTTCGACCTCGGCAAGCTGGGCATCGGCGTCAATGTCGGCGCGATCCTGGTGGGGTCGTCCATCGGCGCCTTCATCGCAGGACGCATGGCCGACCTGATCGGGCGGCGCGGCGTGATGATGCTGGCGGCGGTGCTGTTCCTGGGCAGCGCGCTGATGGCAGGCGCGGCGGATTCCTCCGCCATATTCATCATCGCCCGCATCATCGGCGGGCTGGGCGTTGGCGCGGCGAGCGTCATTTCACCCGTCTATATCTCCGAAGTGACGCCTGCGGCCGTGCGCGGGCGGCTGTCGAGCGTGCAGCAGGTGATGATCATCTCCGGCCTGACCGGCGCGTTCGTCGCCAATTTCGTGCTGGCGCGCTATGCGGGCGGGTCGACGGCGGAACTGTGGCTGGGCTTTCCGGCCTGGCGCTGGATGTTCTGGCTTCAGGCGATTCCGGCGGCGATCTATTTCCTGGCGTTGCTGGCGATCCCGGAAAGCCCCCGCTATCTGGTGGCGCGGGGGCAAGACGAGCGCGCCCATGCCGTTTTGACCCGGCTGTTCGGAGCGGAAGCGGCGACCCGCAAGGTGGCGGAGATTCGCGCCAGCCTGGCCGCCGACCATCACCAGCCGAAGCTGAGCGACCTGATCGACCGGGCGAGCGGCAGGATTCGTCCCATCGTCTGGACCGGCATCGGCCTCGCCGTGTTCCAGCAACTCGTCGGCATCAACGTCGTCTTCTACTATGGCGCGACATTGTGGGAAGCGGTCGGCTTTTCCGAAGATTATGCGTTGCAGACCAACATCCTGTCGGGCGTGCTGTCGATCGGCGCCTGCCTGACCACCATCGCGCTGGTCGACCGGATCGGGCGCAAGCCGCTGCTGCTGATTGGATCGGCGGGCATGGCGGTGACTCTGGCGACCGTCGCCTATGCCTTTTCCACGGCGATCACCGGGGCCGACGGCGCGGTGACGCTGCCCGGCGATAATGGCGTGATCGCGCTGGTTGCGGCCAATCTCTACGTGATCTTCTTCAACATGAGCTGGGGACCGATCATGTGGGTGATGCTGGGCGAAATGTTCCCCAACCAGATACGCGGATCGGGCCTTGCCGTGTCGGGCTTCGCGCAGTGGATCGCCAATGCGGCGATTTCGGTCAGCTTCCCGGCGCTGGCGGTGTCGCCGGGGTTGGCGATCACTTATACCGGCTATGCGATTTTCGCCGCCATCTCCTTCTTCTTCGTGCGCGCGCTGGTGCATGAGACGAAGGGGCGCGAACTGGAGGATATGGTCGGCTAA > 1074 Slin_2048 PFAM:_general_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bba:Bd2344_hypothetical_protein general_substrate_transporter YP_003386892.1 11 MNSKPQYLTEKMIVEQTPKSEAGTKTLLSVIGASSLGTLIEWYDFYIFGSLAAILSTQFFPKDNPTAALLSTLATFAAGFIVRPFGALVFGRLGDLVGRKYTFLVTLVLMGGSTFFIGLIPGYETIGFWAPLLVLLLRLIQGLALGGEYGGAATYVAEYAPKGRRGYYTSFIQTTATLGLFVSLGVIVATRQVVGVEDFAKWGWRIPFVLSALLVGVSIYIRLKMSESPVFTKLKSEGKTSKNPLAESFGKRENLKMVLLALFGATMGQGVIWYTGQFYALSFIQKACNVEFVQSNIVVAVALLIATPFFVIFGGLSDKIGRKGIMLAGMALGILTYRPIYEKMYSLTDLKAKQELTEQTKVDVKKALVANTADSLITTTTTKAFADGTAYKEVSKQTVPADASVEKPKPEVVKSVTMSTGDLMMMIFLVLLQVLYVTMVYGPIAAFLVELFPTRIRYTSMSLPYHIGNGVFGGLVPFIATALVATATKANETAAAAGVAPVVSKAYLEGLWYPIIVASVSFIIGLLYLSNRAKAVERD Cytophagia Spirosoma_linguale_DSM_74 Spirosoma_linguale_DSM_74 NC_013730 2477882..2479501 Lail,K.,_Sikorski,J.,_Saunders,E.,_Lapidus,A.,_Glavina_Del_Rio,T.,_Copeland,A.,_Tice,H.,_Cheng,J.F.,_Lucas,S.,_Nolan,M.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Ivanova,N.,_Mavromatis,K.,_Ovchinnikova,G.,_Pati,A.,_Chen,A.,_Palaniappan,K.,_Land,M.,_Hauser,L.,_Chang,Y.J.,_Jeffries,C.D.,_Chain,P.,_Brettin,T.,_Detter,J.C.,_Schutze,A.,_Rohde,M.,_Tindall,B.J.,_Goker,M.,_Bristow,J.,_Eisen,J.A.,_Markowitz,V.,_Hugenholtz,P.,_Kyrpides,N.C.,_Klenk,H.P._and_Chen,F. NA 0:1620 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001769.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4083212Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Spirosoma_linguale_DSM_74Culture_Collection_ID_::_DSM_74,_ATCC_33905,_LMG_10896GOLD_Stamp_ID_::_Gi02298Gene_Calling_Method_::_GeneMarkIsolation_Site_::_Laboratory_water_bathOxygen_Requirement_::_Aerobecell_Shape_::_Rod-shapedMotility_::_MotileTemperature_Range_::_MesophileTemperature_Optimum_::_20_-_30CGram_Staining_::_gram-Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Fresh_water,_Fresh_water,_SoilEnergy_Source_::_Chemoorganotroph##Metadata-END##COMPLETENESS:_full_length. NA 27-JAN-2012 Spirosoma_linguale_DSM_74_chromosome,_complete_genome. NA Vitreoscillaceae_Pringsheim_1949_(Approved_Lists_1980) /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Spirosoma_linguale_D2QCT8_SPILD.gb Spirosoma_Migula_1894_(Approved_Lists_1980)_emend._Finster_et_al._2009 284034943 Stand_Genomic_Sci_2_(2),_176-185_(2010) NA NC_013730 NA NA Cytophagales_Leadbetter_1974 Cytophaga-Flexibacter-Bacteroides_phylum 21304700 1620 NA genomic_DNA NA DSM_74 NA Spirosoma_linguale_Migula_1894 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 504472 Bacteria,_Bacteroidetes,_Cytophagia,_Cytophagales,_Cytophagaceae,_Spirosoma Complete_genome_sequence_of_Spirosoma_linguale_type_strain_(1) NA NC_013730.1 CTAGTCGCGCTCGACGGCTTTAGCGCGGTTACTCAGATATAACAACCCAATTATAAAGGACACACTGGCCACAATAATCGGGTACCAGAGCCCTTCCAGATAGGCTTTGGAAACAACGGGAGCCACACCGGCCGCTGCCGCAGTTTCATTCGCCTTCGTAGCCGTTGCTACCAGCGCCGTTGCAATAAACGGTACCAACCCGCCAAAAACACCGTTGCCAATATGGTAGGGTAACGACATGGATGTGTAACGAATCCGGGTTGGAAACAACTCAACCAGAAAGGCGGCTATCGGGCCGTATACCATCGTTACATACAACACCTGAAGCAGCACCAGAAAAATCATCATCATTAAATCACCCGTCGACATCGTCACCGATTTAACTACCTCGGGTTTGGGCTTCTCCACCGACGCATCGGCCGGAACGGTCTGTTTCGACACTTCCTTGTAAGCGGTACCATCGGCGAAGGCTTTGGTCGTCGTTGTGGTGATCAGTGAATCGGCGGTGTTCGCAACCAACGCTTTTTTAACGTCTACTTTCGTCTGTTCGGTCAGTTCCTGTTTCGCCTTCAAATCCGTCAGGCTATACATCTTCTCGTAAATTGGGCGATAGGTCAGAATGCCCAGCGCCATACCGGCCAGCATGATGCCTTTACGGCCTATTTTGTCCGACAGACCACCAAATATTACGAAGAAGGGGGTGGCAATCAGCAGGGCCACCGCCACGACAATGTTAGATTGGACAAATTCGACATTACAGGCTTTCTGTATAAACGACAGGGCATAAAACTGACCTGTGTACCAGATAACACCCTGCCCCATAGTAGCCCCAAACAAGGCCAGTAAGACCATTTTCAGGTTTTCGCGCTTGCCAAAGCTCTCGGCTAGTGGGTTCTTGGATGTTTTCCCTTCCGATTTAAGCTTGGTAAACACCGGCGACTCCGACATTTTCAAGCGTATATAAATAGAAACGCCTACCAGTAAAGCGGACAAGACAAAGGGGATACGCCAGCCCCACTTGGCAAAATCCTCCACGCCCACCACCTGCCGGGTTGCCACAATCACGCCCAGCGACACGAACAGTCCTAAGGTTGCCGTTGTCTGAATAAAGCTGGTATAATAACCCCTACGACCTTTAGGAGCATATTCGGCTACGTACGTAGCTGCTCCGCCGTATTCACCTCCCAGCGCCAGCCCCTGTATCAGGCGAAGCAGCAGCACAAGCAACGGTGCCCAGAAACCGATAGTCTCATAACCCGGAATCAGCCCGATAAAAAATGTTGATCCACCCATCAGCACCAGCGTCACCAGAAACGTATATTTCCGGCCAACGAGGTCGCCTAACCGACCAAATACCAACGCTCCAAACGGACGGACAATGAAACCGGCGGCAAACGTTGCCAGCGTAGACAGCAAGGCGGCCGTTGGGTTATCTTTTGGAAAAAATTGTGTGGACAGAATAGCGGCCAGACTGCCAAAGATGTAAAAATCGTACCATTCAATGAGGGTTCCCAGCGAAGAGGCACCAATTACGCTCAGTAACGTTTTGGTACCGGCTTCAGATTTGGGGGTTTGTTCTACTATCATTTTTTCAGTTAGGTATTGAGGTTTGGAATTCAT > 1075 sr11552 NA conserved_hypothetical_protein CBQ67602.1 NA MSSPFAITDEGGHSSWIEQPPSNGPVADDTLHGHTSRDPPSIASASTKKQPTLRPVSLPPHLSSQSLGRGSARSSDDLPRRPPLVERVTSSRSLFLPSINYSGPQDPGDRDDWRATAVGETPLDRTMDRIGMGRYQWTVLILSGLGWAADNMWIQAIAIILPHIQRYFTLSDGIVGLASSSIFVGMFVGSIAWGTISDAYGRRAAFNITLAVTAIFGTLSAMASSFALLCLLLFAVGTGVGGSMPTDSSNLVENLPVRKHSYVTALSVFFSAGSVVSSLVGLSVLSARNPEGWRWLLGALALVTVLFVSARVVFFRLLESPKYLVHAGRPQEARDILQRIQRYNGGATIALRIQDVEDHGHSGVDRGVDLEGSQHSLHRRASHAEGADARVADQNRFRDSYAADEDDDDAGDTPGREASSRPLLDHNADGDGQGNSRKNDQDMDDVRPRHDVGASNSADLPASLSWLPKSWHPSAADLASRCSEMFSPEWKRTSLLIWIIWGGMSYGFTTFNVLLPKLLEQRYDTPEKATVVPGEPDDASIQRALVDILVYSLSSLPGSLISAYMVETRLGRIGTMVSSTALMAAAVLLFSLTYWRSSLTFVSVSSSISYAAIYGYTPEVMAPTIRATACGTASAISRVAGIVAPLLAGWAFSLSPAVPLFMATSVLVIVTLAMAMLPIETRGRAAAGASQEGVDAEAGGTR Ustilaginomycetidae Sporisorium_reilianum_SRZ2 Sporisorium_reilianum_SRZ2 FQ311430 555219..557322 Schirawski,J.,_Mannhaupt,G.,_Munch,K.,_Brefort,T.,_Schipper,K.,_Doehlemann,G.,_Di_Stasio,M.,_Rossel,N.,_Mendoza-Mendoza,A.,_Pester,D.,_Muller,O.,_Winterberg,B.,_Meyer,E.,_Ghareeb,H.,_Wollenberg,T.,_Munsterkotter,M.,_Wong,P.,_Walter,M.,_Stukenbrock,E.,_Guldener,U._and_Kahmann,R. NA 0:>2104 Sequencing_was_performed_by_454_Life_Sciences_(USA)_http://454.com. NA 11-AUG-2011 Sporisorium_reilianum_SRZ2_chromosome_1_complete_DNA_sequence. NA Ustilaginaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sporisorium_reilianum_E6ZJU9_9BASI.gb Sporisorium 323507493 Science_330_(6010),_1546-1548_(2010) fungi FQ311430 NA NA Ustilaginales basidiomycetes 21148393 2104 1 genomic_DNA NA NA NA Sporisorium_reilianum NA complement NA NA NA Dikarya NA Ustilaginomycotina NA NA NA NA eukaryotes NA 999809 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Ustilaginomycotina,_Ustilaginomycetes,_Ustilaginales,_Ustilaginaceae,_Sporisorium Pathogenicity_determinants_in_smut_fungi_revealed_by_genome_comparison NA FQ311430.1 CTACCGCGTCCCGCCAGCTTCCGCATCCACACCCTCCTGAGACGCACCTGCAGCAGCCCGACCACGAGTCTCGATGGGCAGCATGGCCATGGCCAACGTAACGATGACCAGCACCGACGTGGCCATAAACAGCGGCACGGCCGGAGACAGCGAAAAGGCCCAGCCAGCCAAGAGGGGCGCGACGATGCCAGCGACTCGACTGATGGCCGACGCGGTTCCGCATGCCGTGGCCCTGATGGTGGGCGCCATGACTTCGGGCGTGTAGCCGTAGATGGCAGCATACGAAATGGAGCTCGACACGGACACGAACGTCAAGCTGGAGCGCCAGTAGGTGAGCGAGAAGAGCAGCACAGCCGCCGCCATGAGCGCCGTCGAGCTGACCATGGTGCCGATGCGACCGAGGCGCGTCTCGACCATGTAGGCCGAGATCAGGCTTCCGGGGAGCGACGAGAGCGAGTAGACGAGGATGTCGACCAACGCGCGCTGGATGGAAGCGTCGTCCGGCTCGCCCGGCACAACTGTCGCCTTTTCCGGCGTGTCATAGCGCTGCTCGAGCAGTTTGGGCAGGAGGACGTTGAACGTCGTAAACCCGTACGACATGCCGCCCCAGATGATCCAGATGAGCAGCGAGGTGCGCTTCCACTCTGGCGAAAACATCTCGCTGCAGCGCGACGCCAGATCGGCTGCGCTTGGGTGCCAGCTCTTGGGAAGCCACGAGAGCGAGGCGGGCAAGTCCGCGCTGTTTGAGGCGCCTACATCGTGCCGTGGACGGACGTCGTCCATGTCTTGGTCGTTCTTTCGCGAGTTGCCTTGGCCATCTCCATCGGCGTTGTGATCGAGCAAGGGCCGCGAAGACGCCTCACGCCCCGGAGTGTCTCCTGCATCATCATCGTCCTCGTCTGCCGCGTAACTATCTCGGAATCGATTCTGATCCGCAACGCGAGCGTCAGCCCCCTCAGCATGAGAAGCACGCCGATGCAACGAATGCTGGCTGCCCTCCAGATCGACGCCTCGATCCACACCCGAATGTCCGTGATCCTCTACATCCTGTATCCGAAGCGCGATCGTCGCACCACCGTTATACCGTTGAATCCTTTGCAGAATGTCCCTCGCCTCCTGCGGCCTCCCCGCGTGCACCAAGTACTTGGGCGATTCGAGCAGCCGAAAGAACACCACTCTAGCGGAAACAAAGAGCACCGTGACAAGCGCCAGCGCGCCCAACAACCACCTCCAGCCCTCGGGATTGCGAGCCGACAGCACCGACAGCCCAACGAGCGACGAAACGACGGATCCGGCCGAAAAGAACACGGAGAGCGCCGTGACGTAGCTGTGCTTGCGGACGGGCAGATTCTCGACCAGATTCGACGAGTCGGTCGGCATGCTCCCTCCCACACCCGTGCCCACCGCGAACAGCAGCAGGCACAGCAGCGCAAACGAAGACGCCATCGCCGAGAGCGTGCCGAAAATGGCCGTGACAGCGAGCGTGATGTTGAATGCGGCCCTGCGACCGTACGCGTCCGAGATGGTGCCCCACGCTATGGAGCCGACGAACATGCCGACGAAGATCGACGAGCTGGCTAAGCCGACGATGCCGTCCGAGAGGGTGAAATAGCGCTGGATGTGCGGGAGGATGATGGCGATGGCCTGGATCCACATGTTGTCCGCGGCCCAGCCGAGGCCGGAGAGGATGAGCACGGTCCACTGGTAGCGCCCCATGCCGATGCGGTCCATGGTGCGGTCGAGCGGCGTCTCGCCCACGGCGGTTGCGCGCCAGTCATCGCGGTCGCCGGGATCTTGCGGGCCAGAGTAGTTGATCGAGGGCAGGAAGAGCGAGCGGGACGAAGTGACGCGTTCGACGAGCGGCGGTCGACGTGGCAAGTCGTCGCTGCTGCGTGCTGAACCTCGACCCAGCGACTGCGAGCTCAGATGCGGCGGTAGAGAGACGGGTCGTAGTGTCGGCTGTTTCTTCGTCGAGGCGGAGGCTATCGATGGCGGGTCGCGCGATGTATGGCCATGCAAGGTGTCATCTGCGACAGGCCCGTTGCTGGGAGGCTGCTCGATCCAGCTGCTGTGCCCGCCTTCGTCCGTGATGGCAAAGGGCGAA > 1076 Snas_1744 PFAM:_major_facilitator_superfamily_MFS_1;_General_substrate_transporter;_KEGG:_bav:BAV1823_alpha-ketoglutarate_permease major_facilitator_superfamily_protein YP_003510535.1 11 MTAPPLPAPAGAPMSRTRQLAAASVGNLVEWYDWYAYSFLAVYFSSQFFPEGGGPLVPLLNTFAIFAVGFFMRPVGGLLLGWFADRFGRRSALTLTITLMGAGGLLLAVSPTYAQVGVLAPILLVLARLIQGLSVGGEFAASTTFLVESAGPGRRGLFSSFQYVSTTTGQLAAAGLAALMASQLSKADMEAWGWRVVFLVGAVASIVGLWIRKGAHETHPDAQALREGTVKRPHMFSFLTRYPGKSLLIIGITVAGTISYYTWTVYLPSYAETSVKYDPSKALLVSTIALAFFIVLQPLAGMLSDRIGRKPMLLTFSAGLAILTVPLLNAVDTSFISLLSVSLVAMVFLSGYTAIAAAVMVEIFPARVRAAGIGFPYSLTVALFGGTAPYVGTYLSSLELGSWFPWYIVVLTLVSLPVYFFLRETKDDELDVG high_GC_Gram+ Stackebrandtia_nassauensis_DSM_44728 Stackebrandtia_nassauensis_DSM_44728 NC_013947 1829844..1831145 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Kyrpides,N.,_Mavromatis,K.,_Ivanova,N.,_Ovchinnikova,G.,_Munk,A.C.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Larimer,F.,_Land,M.,_Hauser,L.,_Markowitz,V.,_Cheng,J.-F.,_Hugenholtz,P.,_Woyke,T.,_Wu,D.,_Jando,M.,_Mayilraj,S.,_Goker,M.,_Klenk,H.-P._and_Eisen,J.A. NA 0:1302 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001778.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4082381Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_Cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Stackebrandtia_nassauensis_LLR-40K-21,_DSM_44728Culture_Collection_ID_::_DSM_44728GOLD_Stamp_ID_::_Gc01107Funding_Program_::_DOE-GEBA_2007Number_of_Reads_::_81931_Sanger,_851638_pyrosequenceAssembly_Method_::_Newbler_version_1.1.02.15,_PhrapSequencing_Depth_::_11x_Sanger;_29x_454Gene_Calling_Method_::_Prodigal_1.4,_GenePRIMPIsolation_Site_::_Soil_sample_from_Nassau_BahamasIsolation_Country_::_BahamasLatitude_::_25.066127Longitude_::_-77.339025Oxygen_Requirement_::_AerobeMotility_::_NonmotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileTemperature_Optimum_::_28CGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Soil##Metadata-END##COMPLETENESS:_full_length. NA 26-JAN-2012 Stackebrandtia_nassauensis_DSM_44728_chromosome,_complete_genome. NA Glycomycetaceae_Rainey_et_al._1997_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Stackebrandtia_nassauensis_D3PXH9_STANL.gb Stackebrandtia_Labeda_and_Kroppenstedt_2005_emend._Wang_et_al._2009 291297538 Unpublished NA NC_013947 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1302 NA genomic_DNA NA DSM_44728 NA Stackebrandtia_puertoricensis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Glycomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 446470 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Glycomycineae,_Glycomycetaceae,_Stackebrandtia The_complete_genome_of_Stackebrandtia_nassauensis_DSM_44728 NA NC_013947.1 CTAGCCGACGTCGAGCTCGTCGTCCTTGGTCTCACGCAGGAAGAAGTACACCGGCAGCGACACCAACGTCAGAACCACGATGTACCAAGGGAACCAGGAACCGAGTTCGAGACTGGACAGATAGGTGCCCACATAGGGCGCGGTACCGCCGAACAGCGCGACGGTCAGGGAGTACGGGAAACCGATACCCGCCGCCCGCACCCGGGCCGGGAAGATCTCCACCATCACCGCCGCGGCGATCGCGGTGTACCCGCTGAGGAACACCATCGCCACCAGCGACACCGACAGCAGGCTGATGAAGCTGGTGTCCACCGCGTTCAACAGCGGAACCGTCAGGATCGCCAGCCCGGCCGAGAAGGTCAGCAACATCGGTTTGCGTCCGATCCGGTCGGACAGCATCCCGGCCAGCGGTTGCAGCACGATGAAGAACGCCAACGCGATCGTCGAGACCAGCAGCGCCTTGCTGGGGTCGTACTTCACCGAGGTCTCCGCGTAGGACGGCAGGTACACGGTCCAGGTGTAGTACGAGATCGTTCCCGCGACCGTGATCCCGATGATCAGCAGCGACTTGCCGGGGTACCGGGTCAGGAACGAGAACATGTGCGGCCGCTTGACGGTGCCCTCGCGCAGCGCCTGCGCGTCGGGGTGCGTCTCGTGGGCGCCCTTGCGGATCCACAGACCCACGATGCTGGCGACGGCGCCCACGAGGAACACCACCCGCCAACCCCAGGCCTCCATGTCGGCCTTCGACAGCTGCGAGGCCATCAGCGCGGCCAGCCCGGCCGCCGCCAACTGCCCGGTCGTCGTCGACACGTACTGGAAACTGGAGAACAGTCCCCGCCTGCCCGGCCCGGCCGACTCGACCAGGAACGTCGTCGACGCGGCGAACTCGCCGCCGACCGACAAGCCCTGGATCAACCGCGCCAACACCAACAGGATCGGCGCCAGCACACCCACCTGCGCGTACGTCGGGCTGACGGCCAGCAACAGGCCACCGGCACCCATGAGCGTGATCGTCAACGTCAGGGCCGAACGCCTGCCGAACCGGTCGGCGAACCAACCCAGCAGCAGACCGCCGACCGGCCGCATGAAGAACCCGACCGCGAAGATCGCGAACGTGTTCAGCAGCGGCACCAGCGGCCCACCGCCCTCGGGGAAGAACTGGCTGGAGAAGTAGACGGCCAAAAACGAGTAGGCGTACCAGTCGTACCACTCGACCAGGTTGCCGACCGAGGCGGCGGCCAGCTGGCGAGTACGGCTCATGGGGGCGCCCGCGGGCGCGGGCAGGGGTGGGGCGGTCAT > 1077 Snas_4696 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_xcv:XCV4408_metabolite:H+_symporter_family_protein general_substrate_transporter YP_003513432.1 11 MSDAKAEVPAGSSPLSAPTSTRRAILNTLRGSSGNLVEWYDVYIYTVFASYFEAQFFAESDENSTIYIYAIFAVTFLMRPVGSWFFGRFADRHGRRAALLFSVSLMAGCSFLIAIMPTRFSIGVWAAVILILARLVQGFATGGEYGTSATYMSEAATRERRGFFSSFQYVTLVGGHVLAQLTLLIMFVFLDDTEIKSWAWRIPFAIGGLAALVVLWLRRSMDESLSAEHLAATRSGRDRRSGSLRELFGSYFKPLLLVFLITLGGTVAFYTYSVNAPAIIKATYTDQAIVATWVNLIGLIFLMCLQPVGGWISDKVGRKPLLVFFGVGGVIYTYVLITYLPKTTNPVASFALVAVGYIILTGYTSINALVKAEQFPASIRALGVGLGYALANSAFGGTAPVIYETMKTNNHVPQFIAYVTICIAVSLVVYIFWLKNKSTTALDIESGHAFEPVGAGAASRKP high_GC_Gram+ Stackebrandtia_nassauensis_DSM_44728 Stackebrandtia_nassauensis_DSM_44728 NC_013947 5005633..5007021 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Kyrpides,N.,_Mavromatis,K.,_Ivanova,N.,_Ovchinnikova,G.,_Munk,A.C.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Larimer,F.,_Land,M.,_Hauser,L.,_Markowitz,V.,_Cheng,J.-F.,_Hugenholtz,P.,_Woyke,T.,_Wu,D.,_Jando,M.,_Mayilraj,S.,_Goker,M.,_Klenk,H.-P._and_Eisen,J.A. NA 0:1389 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001778.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4082381Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_Cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Stackebrandtia_nassauensis_LLR-40K-21,_DSM_44728Culture_Collection_ID_::_DSM_44728GOLD_Stamp_ID_::_Gc01107Funding_Program_::_DOE-GEBA_2007Number_of_Reads_::_81931_Sanger,_851638_pyrosequenceAssembly_Method_::_Newbler_version_1.1.02.15,_PhrapSequencing_Depth_::_11x_Sanger;_29x_454Gene_Calling_Method_::_Prodigal_1.4,_GenePRIMPIsolation_Site_::_Soil_sample_from_Nassau_BahamasIsolation_Country_::_BahamasLatitude_::_25.066127Longitude_::_-77.339025Oxygen_Requirement_::_AerobeMotility_::_NonmotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileTemperature_Optimum_::_28CGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Soil##Metadata-END##COMPLETENESS:_full_length. NA 26-JAN-2012 Stackebrandtia_nassauensis_DSM_44728_chromosome,_complete_genome. NA Glycomycetaceae_Rainey_et_al._1997_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Stackebrandtia_nassauensis_D3Q7J7_STANL.gb Stackebrandtia_Labeda_and_Kroppenstedt_2005_emend._Wang_et_al._2009 291297538 Unpublished NA NC_013947 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1389 NA genomic_DNA NA DSM_44728 NA Stackebrandtia_puertoricensis NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Glycomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 446470 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Glycomycineae,_Glycomycetaceae,_Stackebrandtia The_complete_genome_of_Stackebrandtia_nassauensis_DSM_44728 NA NC_013947.1 TCACGGCTTTCGTGAGGCGGCACCGGCGCCGACGGGTTCGAAGGCGTGCCCGGACTCGATGTCCAGGGCCGTCGTGGACTTGTTCTTCAGCCAGAAGATGTAGACCACCAGCGAGACCGCGATGCAGATCGTCACGTACGCGATGAACTGCGGCACGTGGTTGTTGGTCTTCATCGTCTCGTAGATCACCGGCGCGGTGCCGCCGAAGGCGGAGTTGGCCAGCGCGTAGCCCAGGCCGACCCCCAGCGCCCGGATCGAGGCCGGGAACTGTTCGGCCTTGACCAGCGCGTTGATGGAGGTGTAGCCGGTGAGGATGATGTAGCCGACCGCGACCAGCGCGAAGGACGCGACCGGGTTGGTGGTCTTGGGCAGGTAGGTGATCAGGACGTAGGTGTAGATGACGCCGCCGACGCCGAAGAACACCAGCAGCGGTTTGCGGCCGACCTTGTCGGAGATCCAGCCGCCGACCGGTTGCAGGCACATCAGGAAGATCAGGCCGATCAGGTTGACCCAGGTGGCCACGATCGCCTGGTCGGTGTAGGTGGCCTTGATGATCGCCGGGGCGTTGACGCTGTAGGTGTAGAAGGCGACGGTGCCGCCCAGCGTGATCAGGAAGACCAGAAGCAGCGGCTTGAAGTACGAGCCGAACAGTTCCCGCAGCGAACCCGAGCGGCGGTCGCGGCCCGAGCGGGTGGCGGCCAGGTGCTCGGCCGACAGCGACTCGTCCATGGATCGCCGCAGCCACAGCACCACCAGCGCCGCCAGACCTCCGATGGCGAACGGGATCCGCCAGGCCCAGGACTTGATCTCGGTGTCGTCGAGGAACACGAACATGATCAGCAGCGTCAGCTGCGCCAGCACGTGGCCGCCGACGAGGGTGACGTACTGGAACGAGGAGAAGAAGCCGCGCCGTTCGCGGGTGGCGGCCTCGGACATGTAGGTCGCCGAGGTGCCGTACTCACCGCCGGTGGCGAAGCCCTGCACCAGCCGGGCCAGGATCAGGATGACCGCCGCCCAGACCCCGATCGAGAACCGGGTGGGCATGATCGCGATGAGGAAGGAACAGCCCGCCATCAGGGACACGCTGAACAGCAGGGCGGCGCGGCGGCCGTGCCGGTCGGCGAAGCGTCCGAAGAACCAGGAGCCGACGGGGCGCATGAGGAACGTCACCGCGAAGATCGCGTAGATGTAGATGGTGGAGTTCTCGTCCGACTCGGCGAAGAACTGGGCTTCGAAATAAGAAGCGAAGACGGTGTAGATGTAGACGTCGTACCACTCGACCAGGTTTCCGGAGGAGCCGCGCAGCGTGTTGAGGATGGCGCGACGGGTGCTGGTGGGGGCCGACAGCGGTGACGAACCCGCGGGCACCTCGGCTTTGGCGTCTGACAT > 1078 SaurJH1_1849 PFAM:_major_facilitator_superfamily_MFS_1;_KEGG:_sav:SAV1761_multidrug_resistance_protein_homolog major_facilitator_transporter YP_001316980.1 11 MNIPKSVWWLVIGMALNITGSSFLWPLNTIYMKQELGKSLTVAGLVLMINSFGMVIGNLLGGSLFDKLGGYKTILIGTFTCLCSTTLLNFFHGWPWYAVWLVMLGFGGGMIIPAIYAMAGAVWPNGGRQTFNAIYLAQNIGVAVGAAMGGFVAEFSFNYIFLANLIMYVVFALVAVTQFNIEINAKVKYPTHLDITGKKNKARFISLVLICAMFAICWVAYIQWESTIASFTQSINISMAQYSVLWTINGIMILVAQPLIKPVLYLLKGNLKKQMFVGIIIFMLSFFVTSFAENFTIFVVGMIILTFGEMFVWPAVPTIANQLAPDGKQGQYQGFVNSAATVGKAFGPFLGGVLVDAFNMRMMFIGMMLLLVFALILLMVFKENNTQPKKIDA Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_subsp._aureus_JH1 Staphylococcus_aureus_subsp._aureus_JH1 NC_009632 1941880..1943061 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina_del_Rio,T.,_Hammon,N.,_Israni,S.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Chain,P.,_Malfatti,S.,_Shin,M.,_Vergez,L.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ivanova,N.,_Tomasz,A._and_Richardson,P. NA 0:1182 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000736.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4001072Source_DNA_and_bacteria_available_from_Alexander_Tomasz(tomasz@rockefeller.edu)Contacts:_Alexander_Tomasz_(tomasz@rockefeller.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LLNLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 25-JAN-2012 Staphylococcus_aureus_subsp._aureus_JH1_chromosome,_complete_genome. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_A6U2M5_STAA2.gb Staphylococcus_Rosenbach_1884 150392480 Unpublished NA NC_009632 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1182 NA genomic_DNA NA JH1 NA Streptococcus_aureus NA complement NA NA NA NA NA NA Staphylococcus_aureus_subsp._aureus_Rosenbach_1884 NA NA NA prokaryotes NA 359787 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Complete_sequence_of_chromosome_of_Staphylococcus_aureus_subsp._aureus_JH1 NA NC_009632.1 TTATGCATCTATTTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAAGTAGTAGCATCATACCGATAAACATCATGCGCATATTAAACGCATCAACTAATACACCACCAAGAAATGGACCAAATGCTTTTCCTACTGTAGCAGCTGAATTCACAAAACCTTGGTACTGTCCTTGCTTACCATCTGGCGCTAACTGATTGGCTATAGTTGGAACTGCTGGCCATACAAACATTTCTCCAAAAGTTAAAATAATCATACCGACAACAAATATTGTAAAGTTTTCGGCAAAACTCGTGACAAAGAACGACAACATAAAAATGATGATGCCGACAAACATTTGCTTCTTTAAGTTTCCTTTTAACAGATAGAGAACCGGTTTAATTAATGGTTGTGCTACTAAAATCATTATTCCGTTAATTGTCCATAAAACACTATATTGTGCCATTGAAATATTAATAGATTGTGTAAATGATGCGATTGTAGACTCCCATTGAATATACGCAACCCAACAAATTGCAAACATTGCACAAATTAGTACTAATGAAATAAATCTTGCTTTATTCTTTTTACCAGTAATATCTAAATGAGTTGGATATTTAACTTTCGCATTAATTTCAATATTAAATTGCGTTACCGCGACAAGCGCAAACACAACATACATAATAAGATTGGCTAAAAAGATATAGTTAAAGCTAAATTCTGCGACAAAGCCGCCCATTGCAGCACCGACAGCCACACCAATATTTTGCGCTAAGTATATCGCATTAAACGTTTGTCTTCCGCCATTCGGCCACACTGCTCCAGCCATAGCGTATATCGCAGGAATAATCATTCCGCCACCAAAGCCTAACATTACAAGCCATACAGCATACCAAGGCCACCCGTGAAAGAAATTAAGTAGCGTTGTACTACAAAGACAAGTGAAAGTTCCAATTAAAATCGTCTTGTATCCACCTAATTTATCAAATAGTGAACCACCTAATAAGTTTCCAATAACCATGCCAAATGAATTTATCATTAGCACTAAACCAGCAACAGTTAAACTTTTTCCAAGTTCTTGTTTCATATAAATTGTATTTAAAGGCCACAAAAAACTGGAACCAGTAATATTTAACGCCATGCCAATTACTAGCCACCAGACTGATTTAGGTATATTCAT > 1079 SABG_00604 NA siderophore_biosynthesis_protein_SbnE EEV08018.1 11 MQNKELIQHAAYAAIERILNEYFREENLYQVPPQNHQWSIQLSELETLTGQFAYWSAMGHHMYHPEVWLIDGKSKKLTTYKEAIARILQHMAQSADNQTAVQQHMAQIMSDIDNSIHRTARYLQSNTIDYAEDRYIVSEQSLYLGHPFHPTPKSASGFSEADLEKYAPECHTSFQLHYLAVHQDVLLTRYVEGKEDQVEKVLYQLADIDISEIPKDFILLPIHPYQINVLRQHPQYMQYSEQGLIKDLGVSGDSVYPTSSVRTVFSKALNIYLKLPIHVKITNFIRTNDLEQIERTIDAAQVIASVKDEVETPHFKLMFEEGYRALLPNPLGQTVEPEMDLLTNSAMIVREGIPNYHADKDIHVLASLFETMPDSPTSKLSQVIEQSGLAPEAWLECYLDRTLLPILKLFSNTGISLEAHVQNTLIELKDGIPEVCYVRDLEGICLSRTIATEKQLVPNVVAASSPVVYAHDEAWHRLKYYVVVNHLGHLVSTIGKATRNEVVLWKLVAHRLMTWKKEYANNAVFIDCVEDLYQTPTIAAKANLMSKLNDCGANPIYTHIPNPICHNKEVSYCESNNS Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_subsp._aureus_65-1322 Staphylococcus_aureus_subsp._aureus_65-1322 GG700560 653912..655168 Feldgarden,M.,_Robinson,A.,_Wong,A.,_Smyth,D.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Godfrey,P.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Wirth,D.F.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 1246:>1257 Genome_Coverage:_19.91xSequencing_Technology:_454. NA 04-SEP-2009 Staphylococcus_aureus_subsp._aureus_65-1322_genomic_scaffold_supercont1.2,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_C8A105_STAAU.gb Staphylococcus_Rosenbach_1884 257275963 Unpublished NA GG700560 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1257 NA genomic_DNA NA 65-1322 NA Streptococcus_aureus NA forward NA NA NA NA NA NA Staphylococcus_aureus_subsp._aureus_Rosenbach_1884 NA NA NA prokaryotes NA 585145 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus The_Genome_Sequence_of_Staphylococcus_aureus_strain_65-1322 NA GG700560.1 ATGATTAATCAGTCTATATGGCGCAGTAACTTTCGCATTTTATGGCTCAGTCAGTTTATAGCGATTGCTGGACTGACAGTACTTGTGCCATTATTGCCAATTTATATGGCATCACTACAAAATCTATCAGTCGTAGAAATACAGTTGTGGAGTGGTATAGCGATTGCTGCTCCAGCTGTAACGACGATGATAGCTTCGCCGATATGGGGGAAGCTAGGTGATAAGATCAGTCGAAAATGGATGGTGCTACGAGCGTTACTTGGTTTGGCGGTATGTTTATTTTTAATGGCATTGTGTACTACACCATTACAGTTTGTACTTGTGAGGTTATTGCAGGGACTATTTGGTGGTGTTGTTGATGCATCAAGTGCGTTTGCGAGTGCAGAGGCGCCAGCTGAAGATCGTGGAAAGGTATTAGGAAGACTGCAAAGTTCAGTCAGCGCAGGGTCTCTTGTGGGACCATTAATTGGCGGTGTTACAGCTTCGATATTAGGTTTTAGTGCGTTACTGATGAGTATTGCCGTTATTACTTTTATTGTCTGTATTTTCGGTGCATTAAAATTGATTGAAACGACACATATGCCAAAATCACAAACACCAAATATTAATAAAGGTATTCGCCGTTCATTTCAATGTCTATTATGCACACAACAAACATGTCGATTTATTATCGTTGGCGTTTTAGCAAACTTTGCTATGTATGGCATGCTAACTGCATTATCACCACTTGCTTCATCAGTGAATCATACAGCGATAGATGACCGTAGTGTGATTGGATTTTTACAGTCCGCATTTTGGACGGCTTCGATATTAAGCGCGCCTTTATGGGGTCGCTTTAATGATAAATCATATGTTAAATCAGTATATATATTTGCCACGATTGCATGTGGTTGTAGTGCGATACTGCAAGGTTTAGCGACGAATGTAGAATTTTTAATGGCTGCAAGAATACTTCAAGGATTAACATATAGTGCATTGATTCAAAGTGTCATGTTTGTCGTCGTGAATGCGTGTCATCAACAACTTAAAGGCACATTTGTTGGTACGACAAATAGTATGTTAGTTATTGGTCAAATTATTGGTAGTCTTAGTGGCGCTGCCATTACAAGTTATACTACACCAGCTACTACGTTTATCGTTATGGGCATAGTATTTGCTGTAAGTAGTTTATTTTTAATTTGTTCAACCATCACTAATCAAATCAACGATCACACATTAATGAAATTATGGGAGTTGAAACAAAAAAGTGCAAAATAA > 1080 SAIG_01295 NA multidrug_resistance_protein EEV78175.1 11 MNIPKSVWWLVIGMALNITGSSFLWPLNTIYMKQELGKSLTVAGLVLMINSFGMVIGNLLGGSLFDKLGGYKTILIGTFTCLCSTTLLNFFHGWPWYAVWLVMLGFGGGMIIPAIYAMAGAVWPNGGRQTFNAIYLAQNIGVAVGAAMGGFVAEFSFNYIFLANLIMYVVFALVAVTQFNIEINAKVKYPTHLDITGKKNKARFISLVLICAMFAICWVAYIQWESTIASFTQSINISMAQYSVLWTINGIMILVAQPLIKPVLYLLKGNLKKQMFVGIIIFMLSFFVTSFAENFTIFVVGMIILTFGEMFVWPAVPTIANQLAPDGKQGQYQGFVNSAATVGKAFGPFLGGVLVDAFNMRMMFIGMMLLLVFALILLMVFKENNTQPKKIDA Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_A6300 Staphylococcus_aureus_A6300 ACKF01000027 109893..111074 Ward,D.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Godfrey,P.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Peleg,A.Y.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1182 Genome_Coverage:_20.01xSequencing_Technology:_454. NA 11-SEP-2009 Staphylococcus_aureus_A6300_cont1.27,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_C8LRD9_STAAU.gb Staphylococcus_Rosenbach_1884 257855154 Unpublished NA ACKF01000027 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1182 NA genomic_DNA NA A6300 NA Streptococcus_aureus NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 553571 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus The_Genome_Sequence_of_Staphylococcus_aureus_strain_A6300 NA ACKF01000027.1 TTATGCATCTATTTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAAGTAGTAGCATCATACCGATAAACATCATGCGCATATTAAACGCATCAACTAATACACCACCAAGAAATGGACCAAATGCTTTTCCTACTGTAGCAGCTGAATTCACAAAACCTTGGTACTGTCCTTGCTTACCATCTGGCGCTAACTGATTGGCTATAGTTGGAACTGCTGGCCATACAAACATTTCTCCAAAAGTTAAAATAATCATACCGACAACAAATATTGTAAAGTTTTCGGCAAAACTCGTGACAAAGAACGACAACATAAAAATGATGATGCCGACAAACATTTGCTTCTTTAAGTTTCCTTTTAACAGATAGAGAACCGGTTTAATTAATGGTTGTGCTACTAAAATCATTATTCCGTTAATTGTCCATAAAACACTATATTGTGCCATTGAAATATTAATAGATTGTGTAAATGATGCGATTGTAGACTCCCATTGAATATACGCAACCCAACAAATTGCAAACATTGCACAAATTAGTACTAATGAAATAAATCTTGCTTTATTCTTTTTACCAGTAATATCTAAATGAGTTGGATATTTAACTTTCGCATTAATTTCAATATTAAATTGCGTTACCGCGACAAGCGCAAACACAACATACATAATAAGATTGGCTAAAAAGATATAGTTAAAGCTAAATTCTGCGACAAAGCCGCCCATTGCAGCACCGACAGCCACACCAATATTTTGCGCTAAGTATATCGCATTAAACGTTTGTCTTCCGCCATTCGGCCACACTGCTCCAGCCATAGCGTATATCGCAGGAATAATCATTCCGCCACCAAAGCCTAACATTACAAGCCATACAGCATACCAAGGCCACCCGTGAAAGAAATTAAGTAGCGTTGTACTACAAAGACAAGTGAAAGTTCCAATTAAAATCGTCTTGTATCCACCTAATTTATCAAATAGTGAACCACCTAATAAGTTTCCAATAACCATGCCAAATGAATTTATCATTAGCACTAAACCAGCAACAGTTAAACTTTTTCCAAGTTCTTGTTTCATATAAATTGTATTTAAAGGCCACAAAAAACTGGAACCAGTAATATTTAACGCCATGCCAATTACTAGCCACCAGACTGATTTAGGTATATTCAT > 1081 SALG_00938 NA IucA/IucC_family_siderophore_biosynthesis_protein EEV69533.1 11 MQNKELIQHAAYAAIERILNEYFREENLYQVPPQNHQWSIQLSELETLTGQFAYWSAMGHHMYHPEVWLIDGKSKKLTTYKEAIARILQHMAQSADNQTAVQQHMAQIMSDIDNSIHRTARYLQSNTIDYAEDRYIVSEQSLYLGHPFHPTPKSASGFSEADLEKYAPECHTSFQLHYLAVHQDVLLTRYVEGKEDQVEKVLYQLADIDISEIPKDFILLPIHPYQINVLRQHPQYMQYSEQGLIKDLGVSGDSVYPTSSVRTVFSKALNIYLKLPIHVKITNFIRTNDLEQIERTIDAAQVIVSVKDEVETPHFKLMFEEGYRALLPNPLGQTVEPEMDLLTNSAMIVREGIPNYHADKDIHVLASLFETMPDSPMSKLSQVIEQSGLAPEAWLECYLDRTLLPILKLFSNTGISLEAHVQNTLIEFKDGIPDVCFVRDLEGICLSRTIATEKQLVPNVVAASSPVVYAHDEAWHRLKYYVVVNHLGHLVSTIGKATRNEVVLWQLVAHRLMTWKKEYANNAVFVDCVEDLYQTPTIAAKANLMSKLNDCGANPIYTHIPNPICHNKEVSYCESNNS Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_A9635 Staphylococcus_aureus_A9635 ACKI01000028 44874..46130 Ward,D.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Godfrey,P.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Peleg,A.Y.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 1246:>1257 Genome_Coverage:_15.82xSequencing_Technology:_454. NA 11-SEP-2009 Staphylococcus_aureus_A9635_cont1.28,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_C8MFS7_STAAU.gb Staphylococcus_Rosenbach_1884 257845459 Unpublished NA ACKI01000028 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1257 NA genomic_DNA NA A9635 NA Streptococcus_aureus NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 553583 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus The_Genome_Sequence_of_Staphylococcus_aureus_strain_A9635 NA ACKI01000028.1 ATGATTAATCAGTCTATATGGCGCAGTACCTTTCGCATTTTGTGGCTCAGTCAGTTTATAGCGATTGCTGGACTGACAGTACTTGTGCCATTATTGCCAATTTATATGGCATCACTACAAAATCTATCAGTCGTAGAAATACAGTTGTGGAGTGGTATAGCGATTGCTGCTCCAGCTGTAACGACGATGATAGCTTCGCCGATATGGGGGAAGCTAGGTGATAAGATCAGTCGAAAATGGATGGTGTTAAGAGCGTTACTTGGTTTGGCAGTATGCTTATTTTTAATGGCATTGTGTACTACACCATTACAGTTTGTACTTGTGAGGTTATTGCAGGGACTATTTGGTGGTGTTGTTGATGCGTCAAGTGCGTTTGCGAGTGCAGAGGCGCCAGCTGAAGATCGTGGCAAGGTATTAGGAAGACTGCAAAGTTCAGTCAGCGCAGGGTCTCTTGTAGGACCATTAATTGGCGGTGTTACAGCTTCGATATTAGGTTTTAGTGCGTTACTGATGAGTATTGCCGTTATTACTTTTATTGTCTGTATTTTCGGTGCATTAAAATTGATTGAAACGACACATATGCCAAAATCACAAACACCAAATATTAATAAAGGTATTCGCCGTTCATTTCAATGTCTATTATACACACAACAAACATGTCGATTTATTATCGTTGGCGTTTTAGCAAACTTTGCTATGTATGGCATGCTAACTGCATTATCACCACTTGCTTCATCAGTGAATCATACAGCGATAGATGACCGTAGTGTGATTGGATTTTTACAGTCCGCATTTTGGACGGCTTCGATATTAAGCGCGCCTTTATGGGGTCGCTTTAATGATAAATCATATGTTAAATCAGTATATATATTTGCCACGATTGCATGTGGTTGTAGTGCGATACTGCAAGGTTTAGCGACGAATGTAGAGTTTTTAATGGCTGCAAGAATACTTCAAGGATTAACATATAGTGCATTGATTCAAAGTGTCATGTTTGTCGTCGTGAATGCGTGTCATCAACAACTTAAAGGCACATTTGTTGGTACGACAAATAGTATGTTAGTTATTGGTCAAATTATTGGTAGTCTTAGTGGCGCTGCCATTACAAGTTATACTACACCAGCTACTACGTTTATCGTTATGGGCATAGTATTTGCTGTAAGTAGTTTATTTTTAATTTGTTCAACCATCACTAATCAAATCAACGATCACACATTAATGAAATTATGGGAGTTGAAACAAAAAAGTGCAAAATAA > 1082 SANG_02086 NA siderophore_biosynthesis_protein_SbnC EEV65254.1 11 MQNHTAVNTAQAIILRDLVDALLFEDIAGIVSNSEITKENGQTLLIYERETQQIKIPVYFSALNMFRYESSQPITIEGRVSKQPLTAAEFWQTIANMNCDLSHEWEVARVEEGLTTAATQLAKQLSELDLASHPFVMSEQFASLKDRPFHPLAKEKRGLREADYQVYQAELNQSFPLMVAAVKKTHMIHGDTANIDELENLTVPIKEQATDMLNDQGLSIDDYVLFPVHPWQYQHILPNVFATEISEKLVVLLPLKFGDYLSSSSMRSLIDIGAPYNHVKVPFAMQSLGALRLTPTRYMKNGEQAEQLLRQLIEKDEALAKYVMVCDETAWWSYMGQDNDIFKDQLGHLTVQLRKYPEVLAKNDTQQLVSMAALAANDRTLYQMICGKDNISKNDVMTLFEDIAQVFLKVTLSFMQYGALPELHGQNILLSFEDGRVQKCVLRDHDTVRIYKPWLTAHQLSLPKYVVREDTPNTLINEDLETFFAYFQTLAVSVNLYAIIDAIQDLFGVSEHELMSLLKQILKNEVATISWVTTDQLAVRHILFDKQTWPFKQILLPLLYQRDSGGGSMPSGLTTVPNPMVTYD Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_A9763 Staphylococcus_aureus_A9763 ACKK01000017 19721..20977 Ward,D.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Godfrey,P.,_Alvarado,L.,_Berlin,A.,_Borenstein,D.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Walk,T.,_White,J.,_Yandava,C.,_Peleg,A.Y.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 1249:>1257 Genome_Coverage:_16.44xSequencing_Technology:_454. NA 11-SEP-2009 Staphylococcus_aureus_A9763_cont1.17,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_C8MT37_STAAU.gb Staphylococcus_Rosenbach_1884 257840776 Unpublished NA ACKK01000017 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1257 NA genomic_DNA NA A9763 NA Streptococcus_aureus NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 553592 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus The_Genome_Sequence_of_Staphylococcus_aureus_strain_A9763 NA ACKK01000017.1 TTATTTTGCACTTTTTTGTTTCAACTCCCATAATTTCATTAATGTGTGATCGTTGATTTGATTAGTGATGGTTGAACAAATTAAAAATAAACTACTTACTGCAAATACTACGCCCATAACGATAAACGTAGTAGCTGGTGTAGTATAACTTGTAATGGCAGCGCCACTAAGACTGCCAATAATTTGACCAACAACTAACATACTGTTCGTCGTTCCAACAAATGTGCCTTTAAGTTGTTGATGACACGCATTCACGACAACAAACATGACACTTTGAATCAATGCACTATATGTTAATCCTTGAAGTATTCTTGCAGCCATTAAAAACTCTATATTCGTCGCTAAACCTTGCAGTATCGCACTACAACCACATGCAATCGTGGCAAATATATATACTGATTTAACATATGATTTATCATTAAAGCGTCCCCATAAAGGCGCGCTTAATATCGAAGCCGTCCAAAATGCGGACTGTAAAAATCCAATCACACTACGGTCATCTATCGCTGTATGATTCACTGATGAAGCAAGTGGTGATAATGCAGTTAGCATGCCATACATAGCAAAGTTTGCTAAAACGCCAACGATAATAAATCGACATGTTTGTTGTGTGCATAATAGACATTGAAATGAACGGCGAATACCTTTATTAATATTTGGTGTTTGTGATTTTGGCATATGTGTCGTTTCAATCAATTTTAATGCACCGAAAATACAGACAATAAAAGTAATAACGGCAATACTCATCAGTAACGCACTAAAACCTAATATCGAAGCTGTAACACCGCCAATTAATGGCCCCACAAGAGACCCTGCGCTGACTGAACTTTGCAGTCTTCCTAATACCTTTCCACGATCTTCAGCTGGCGCCTCTGCACTCGCAAACGCACTTGATGCATCAACAACACCACCAAATAGTCCCTGCAATAACCTCACAAGTACAAACTGTAATGGTGTCGTACACAATGCCATTAAAAATAAGCATACCGCCAAACCAAGTAACGCTCTTAAGACCATCCATTTTCGGCTGATCTTATCACCTAGCTTCCCCCATATCGGCGAAGCTATCATCGTCGTTACAGCTGGAGCAGCAATCGCTATACCACTCCACAACTGTATTTCTACGACTGATAGATTTTGTAGTGATGCCATATAAATTGGCAATAATGGCACAAGTACTGTCAGTCCAGCAATCGCTATAAACTGACTGAGCCATAAAATGCGAAAGTTACTGCGCCATATAGACTGATTAATCAT > 1083 SAAV_1770 NA drug_transporter,_putative YP_003282666.1 11 MNIPKSVWWLVIGMALNITGSSFLWPLNTIYMKQELGKSLTVAGLVLMINSFGMVIGNLLGGSLFDKLGGYKTILIGTFTCLCSTTLLNFFHGWPWYAVWLVMLGFGGGMIIPAIYAMAGAVWPNGGRQTFNAIYLAQNIGVAVGAAMGGFVAEFSFNYIFLANLIMYVVFALVAVTQFNIEINAKVKYPTHLDITGKKNKARFISLVLICAMFAICWVAYIQWESTIASFTQSINISMAQYSVLWTINGIMILVAQPLIKPVLYLLKGNLKKQMFVGIIIFMLSFFVTSFAENFTIFVVGMIILTFGEMFVWPAVPTIANQLAPDGKQGQYQGFVNSAATVGKAFGPFLGGVLVDAFNMRMMFIGMMLLLVFALILLMVFKENNTQPKKIDA Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_subsp._aureus_ED98 Staphylococcus_aureus_subsp._aureus_ED98 NC_013450 1841485..1842666 Lowder,B.V.,_Guinane,C.M.,_Ben_Zakour,N.L.,_Weinert,L.A.,_Conway-Morris,A.,_Cartwright,R.A.,_Simpson,A.J.,_Rambaut,A.,_Nubel,U._and_Fitzgerald,J.R. NA 0:1182 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001781.COMPLETENESS:_full_length. NA 11-OCT-2011 Staphylococcus_aureus_subsp._aureus_ED98,_complete_genome. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_D0K600_STAAD.gb Staphylococcus_Rosenbach_1884 269201690 Proc._Natl._Acad._Sci._U.S.A._106_(46),_19545-19550_(2009) NA NC_013450 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 19884497 1182 NA genomic_DNA NA ED98 NA Streptococcus_aureus NA complement NA NA NA NA NA NA Staphylococcus_aureus_subsp._aureus_Rosenbach_1884 NA NA NA prokaryotes NA 681288 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Recent_human-to-poultry_host_jump,_adaptation,_and_pandemic_spread_of_Staphylococcus_aureus NA NC_013450.1 TTATGCATCTATTTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAAGTAGTAGCATCATACCGATAAACATCATGCGCATATTAAACGCATCAACTAATACACCACCAAGAAATGGACCAAATGCTTTTCCTACTGTAGCAGCTGAATTCACAAAACCTTGGTACTGTCCTTGCTTACCATCTGGCGCTAACTGATTGGCTATAGTTGGAACTGCTGGCCATACAAACATTTCTCCAAAAGTTAAAATAATCATACCGACAACAAATATTGTAAAGTTTTCGGCAAAACTCGTGACAAAGAACGACAACATAAAAATGATGATGCCGACAAACATTTGCTTCTTTAAGTTTCCTTTTAACAGATAGAGAACCGGTTTAATTAATGGTTGTGCTACTAAAATCATTATTCCGTTAATTGTCCATAAAACACTATATTGTGCCATTGAAATATTAATAGATTGTGTAAATGATGCGATTGTAGACTCCCATTGAATATACGCAACCCAACAAATTGCAAACATTGCACAAATTAGTACTAATGAAATAAATCTAGCTTTATTCTTTTTACCAGTAATATCTAAATGAGTTGGATATTTAACTTTCGCATTAATTTCAATATTAAATTGCGTTACCGCGACAAGCGCAAACACAACATACATAATAAGATTGGCTAAAAAGATATAGTTAAAGCTAAATTCTGCGACAAAGCCGCCCATTGCAGCACCGACAGCCACACCAATATTTTGCGCTAAGTATATCGCATTAAACGTTTGTCTTCCGCCATTCGGCCACACTGCTCCAGCCATAGCGTATATCGCAGGAATAATCATTCCGCCACCAAAGCCTAACATTACAAGCCATACAGCATACCAAGGCCACCCGTGAAAGAAATTAAGTAGCGTTGTACTACAAAGACAAGTGAAAGTTCCAATTAAAATCGTCTTGTATCCACCTAATTTATCAAATAGTGAACCACCTAATAAGTTTCCAATAACCATGCCAAATGAATTTATCATTAGCACTAAACCAGCAACAGTTAAACTTTTTCCAAGTTCTTGTTTCATATAAATTGTATTTAAAGGCCACAAAAAACTGGAACCAGTAATATTTAACGCCATGCCAATTACTAGCCACCAGACTGATTTAGGTATATTCAT > 1084 SARG_00256 NA siderophore_staphylobactin_biosynthesis_protein_SbnE EFB45211.1 11 MQNKELIQHAAYAAIERILNEYFREENLYQVPPQNHQWSIQLSELETLTGQFAYWSAMGHHMYHPEVWLIDGKSKKLTTYKEAIARILQHMAQSADNQTAVQQHMAQIMSDIDNSIHRTARYLQSNTIDYAEDRYIVSEQSLYLGHPFHPTPKSASGFSEADLEKYAPECHTSFQLHYLAVHQDVLLTRYVEGKEDQVEKVLYQLADIDISEIPKDFILLPIHPYQINVLRQHPQYMQYSEQGLIKDLGVSGDSVYPTSSVRTVFSKALNIYLKLPIHVKITNFIRTNDLEQIERTIDAAQVIASVKDEVETPHFKLMFEEGYRALLPNPLGQTVEPEMDLLTNSAMIVREGIPNYHADKDIHVLASLFETMPDSPTSKLSQVIEQSGLAPEAWLECYLDRTLLPILKLFSNTGISLEAHVQNTLIELKDGIPEVCYVRDLEGICLSRTIATEKQLVPNVVAASSPVVYAHDEAWHRLKYYVVVNHLGHLVSTIGKATRNEVVLWKLVAHRLMTWKKEYANNAVFIDCVEDLYQTPTIAAKANLMSKLNDCGANPIYTHIPNPICHNKEVSYCESNNS Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_subsp._aureus_C101 Staphylococcus_aureus_subsp._aureus_C101 GG730121 290417..291673 Feldgarden,M.,_Robinson,A.,_Wong,A.,_Smyth,D.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Godfrey,P.,_Alvarado,L.,_Berlin,A.,_Bochicchio,J.,_Borenstein,D.,_Chapman,S.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Wirth,D.F.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 1246:>1257 Genome_Coverage:_22.31xSequencing_Technology:_454. NA 29-DEC-2009 Staphylococcus_aureus_subsp._aureus_C101_genomic_scaffold_supercont1.2,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_D2F3D9_STAAU.gb Staphylococcus_Rosenbach_1884 282314569 Unpublished NA GG730121 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1257 NA genomic_DNA NA C101 NA Streptococcus_aureus NA forward NA NA NA NA NA NA Staphylococcus_aureus_subsp._aureus_Rosenbach_1884 NA NA NA prokaryotes NA 585149 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus The_Genome_Sequence_of_Staphylococcus_aureus_strain_C101 NA GG730121.1 ATGATTAATCAGTCTATATGGCGCAGTAACTTTCGCATTTTATGGCTCAGTCAGTTTATAGCGATTGCTGGACTGACAGTACTTGTGCCATTATTGCCAATTTATATGGCATCACTACAAAATCTATCAGTCGTAGAAATACAGTTGTGGAGTGGTATAGCGATTGCTGCTCCAGCTGTAACGACGATGATAGCTTCGCCGATATGGGGGAAGCTAGGTGATAAGATCAGTCGAAAATGGATGGTGCTACGAGCGTTACTTGGTTTGGCGGTATGTTTATTTTTAATGGCATTGTGTACTACACCATTACAGTTTGTACTTGTGAGGTTATTGCAGGGACTATTTGGTGGTGTTGTTGATGCATCAAGTGCGTTTGCGAGTGCAGAGGCGCCAGCTGAAGATCGTGGAAAGGTATTAGGAAGACTGCAAAGTTCAGTCAGCGCAGGGTCTCTTGTGGGACCATTAATTGGCGGTGTTACAGCTTCGATATTAGGTTTTAGTGCGTTACTGATGAGTATTGCCGTTATTACTTTTATTGTCTGTATTTTCGGTGCATTAAAATTGATTGAAACGACACATATGCCAAAATCACAAACACCAAATATTAATAAAGGTATTCGCCGTTCATTTCAATGTCTATTATGCACACAACAAACATGTCGATTTATTATCGTTGGCGTTTTAGCAAACTTTGCTATGTATGGCATGCTAACTGCATTATCACCACTTGCTTCATCAGTGAATCATACAGCGATAGATGACCGTAGTGTGATTGGATTTTTACAGTCCGCATTTTGGACGGCTTCGATATTAAGCGCGCCTTTATGGGGTCGCTTTAATGATAAATCATATGTTAAATCAGTATATATATTTGCCACGATTGCATGTGGTTGTAGTGCGATACTGCAAGGTTTAGCGACGAATGTAGAATTTTTAATGGCTGCAAGAATACTTCAAGGATTAACATATAGTGCATTGATTCAAAGTGTCATGTTTGTCGTCGTGAATGCGTGTCATCAACAACTTAAAGGCACATTTGTTGGTACGACAAATAGTATGTTAGTTATTGGTCAAATTATTGGTAGTCTTAGTGGCGCTGCCATTACAAGTTATACTACACCAGCTACTACGTTTATCGTTATGGGCATAGTATTTGCTGTAAGTAGTTTATTTTTAATTTGTTCAACCATCACTAATCAAATCAACGATCACACATTAATGAAATTATGGGAGTTGAAACAAAAAAGTGCAAAATAA > 1085 SHAG_00591 NA staphylobactin_siderophore_biosynthesis_protein_SbnE EFC27987.1 11 MQNKELIQHAAHAAIERILNEYFREENLYQVPPQNHQWSIQLSELETLTGQFAYWSAMGHHMYHPEVWLIDGKSKKLTTYKEAIARILQHMAQSADNQTAVQQHMAQIMSDIDNSIHRTARYLQSNTIDYAEDRYIVSEQSLYLGHPFHPTPKSASGFSEADLEKYAPECHTSFQLHYLAVHQDVLLTRYVEGKEDQVEKVLYQLADIDISEIPKDFILLPIHPYQINVLRQHPQYMQYSEQGLIKDLGVSGDSVYPTSSVRTVFSKALNIYLKLPIHVKITNFIRTNDLEQIERTIDAAQVIASVKDEVETPHFKLMFEEGYRALLPNPLGQTVEPEMDLLTNSAMIVREGIPNYHADKDIHVLASLFETMPDSPTSKLSQVIEQSGLAPEAWLECYLDRTLLPILKLFSNTGISLEAHVQNTLIELKDGIPEVCYVRDLEGICLSRTIATEKQLVPNVVAASSPVVYAHDEAWHRLKYYVVVNHLGHLVSTIGKATRNEVVLWKLVAHRLMTWKKEYANNAVFIDCVEDLYQTPTIAAKANLMSKLNDCGANPIYTHIPNPICHNKEVSYCESNNS Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_subsp._aureus_A017934/97 Staphylococcus_aureus_subsp._aureus_A017934/97 GG731513 610092..611348 Feldgarden,M.,_Robinson,A.,_Wong,A.,_Smyth,D.,_Young,S.K.,_Zeng,Q.,_Koehrsen,M.,_Godfrey,P.,_Alvarado,L.,_Berlin,A.,_Bochicchio,J.,_Borenstein,D.,_Chapman,S.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.,_Heiman,D.,_Hepburn,T.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Roberts,A.,_Saif,S.,_Shea,T.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Wirth,D.F.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 1246:>1257 Genome_Coverage:_25.83xSequencing_Technology:_454. NA 12-JAN-2010 Staphylococcus_aureus_subsp._aureus_A017934/97_genomic_scaffold_supercont1.19,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_D2UW13_STAAU.gb Staphylococcus_Rosenbach_1884 283788591 Unpublished NA GG731513 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1257 NA genomic_DNA NA A017934/97 NA Streptococcus_aureus NA forward NA NA NA NA NA NA Staphylococcus_aureus_subsp._aureus_Rosenbach_1884 NA NA NA prokaryotes NA 585147 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus The_Genome_Sequence_of_Staphylococcus_aureus_strain_A017934/97 NA GG731513.1 ATGATTAATCAGTCTATATGGCGCAGTAACTTTCGCATTTTATGGCTCAGTCAGTTTATAGCGATTGCTGGACTGACAGTACTTGTGCCATTATTGCCAATTTATATGGCATCACTACAAAATCTATCAGTCGTAGAAATACAGTTGTGGAGTGGTATAGCGATTGCTGCTCCAGCTGTAACGACGATGATAGCTTCGCCGATATGGGGGAAGCTAGGTGATAAGATCAGTCGAAAATGGATGGTGCTACGAGCGTTACTTGGTTTGGCGGTATGTTTATTTTTAATGGCATTGTGTACTACACCATTACAGTTTGTACTTGTGAGGTTATTGCAGGGACTATTTGGTGGTGTTGTTGATGCATCAAGTGCGTTTGCGAGTGCAGAGGCGCCAGCTGAAGATCGTGGAAAGGTATTAGGAAGACTGCAAAGTTCAGTCAGCGCAGGGTCTCTTGTGGGACCATTAATTGGCGGTGTTACAGCTTCGATATTAGGTTTTAGTGCGTTACTGATGAGTATTGCCGTTATTACTTTTATTGTCTGTATTTTCGGTGCATTAAAATTGATTGAAACGACACATATGCCAAAATCACAAACACCAAATATTAATAAAGGTATTCGCCGTTCATTTCAATGTCTATTATGCACACAACAAACATGTCGATTTATTATCGTTGGCGTTTTAGCAAACTTTGCTATGTATGGCATGCTAACTGCATTATCACCACTTGCTTCATCAGTGAATCATACAGCGATAGATGACCGTAGTGTGATTGGATTTTTACAGTCCGCATTTTGGACGGCTTCGATATTAAGCGCGCCTTTATGGGGTCGCTTTAATGATAAATCATATGTTAAATCAGTATATATATTTGCCACGATTGCATGTGGTTGTAGTGCGATACTGCAAGGTTTAGCGACGAATGTAGAATTTTTAATGGCTGCAAGAATACTTCAAGGATTAACATATAGTGCATTGATTCAAAGTGTCATGTTTGTCGTCGTGAATGCGTGTCATCAACAACTTAAAGGCACATTTGTTGGTACGACAAATAGTATGTTAGTTATTGGTCAAATTATTGGTAGTCTTAGTGGCGCTGCCATTACAAGTTATACTACACCAGCTACTACGTTTATCGTTATGGGCATAGTATTTGCTGTAAGTAGTTTATTTTTAATTTGTTCAACCATCACTAATCAAATCAACGATCACACATTAATGAAATTATGGGAGTTGAAACAAAAAAGTGCAAAATAA > 1086 SKAG_01132 NA siderophore_staphylobactin_biosynthesis_protein_SbnE EFG40371.1 11 MQNKELIQHAAYAAIERILNEYFREENLYQVPPQNHQWSIQLSELETLTGEFRYWSAMGHHMYHPEVWLIDGKSKKITTYKEAIARILQHMAQSADNQTAVQQHMAQIMSDIDNSIHRTARYLQSNTIDYVEDRYIVSEQSLYLGHPFHPTPKSASGFSEADLEKYAPECHTSFQLHYLAVHQDVLLTRYVEGKEDQVEKVLYQLADIDISEIPKDFILLPTHPYQINVLRQHPQYMQYSEQGLIKDLGVSGDSVYPTSSVRTVFSKALNIYLKLPIHVKITNFIRTNDLEQIERTIDAAQVIASVKDEVETPHFKLMFEEGYRALLPNPLGQTVEPEMDLLTNSAMIVREGIPNYHADKDIHVLASLFETMPDSPMSKLSQVIEQSGLAPEAWLECYLNRTLLPILKLFSNTGISLEAHVQNTLIELKDGIPDVCFVRDLEGICLSRTIATEKQLVPNVVAASSPVVYAHDEAWHRLKYYVVVNHLGHLVSTIGKATRNEVVLWQLVAHRLMTWKKEYANNAVFVDCVEDLYQTPTIAAKANLMSKLNDCGANPIYTHIPNPICHNKEVSYCESNNS Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_A9754 Staphylococcus_aureus_A9754 ADJI01000004 8921..10177 Ward,D.,_Peleg,A.Y.,_Young,S.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Neiman,D.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Walk,T.,_White,J.,_Yandava,C.,_Haas,B.,_Henn,M.R.,_Nusbaum,C._and_Birren,B. NA 1246:>1257 ##Genome-Assembly-Data-START##Genome_Coverage_::_24.26xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 16-APR-2010 Staphylococcus_aureus_A9754_cont1.4,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_D4U5M5_STAAU.gb Staphylococcus_Rosenbach_1884 294823936 Unpublished NA ADJI01000004 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1257 NA genomic_DNA NA A9754 NA Streptococcus_aureus NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 553590 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus The_Genome_Sequence_of_Staphylococcus_aureus_A9754 NA ADJI01000004.1 ATGATTAATCAGTCTATATGGCGCAGTAACTTTCGCATTTTATGGCTCAGTCAGTTTATAGCGATTGCTGGACTGACAGTACTTGTGCCATTATTGCCAATTTATATGGCATCACTACAAAATCTATCAGTCGTAGAAATACAGTTGTGGAGTGGTATAGCGATTGCTGCTCCAGCTGTAACGACGATGATAGCTTCGCCGATATGGGGGAAGCTAGGTGATAAGATCAGCCGAAAATGGATGGTGTTAAGAGCGTTACTTGGTTTGGCGGTATGCTTATTTTTAATGGCATTGTGTACGACACCATTACAGTTTGTACTTGTGAGGTTATTGCAGGGACTATTTGGTGGTGTTGTTGATGCATCAAGTGCGTTTGCGAGTGCAGAGGCGCCAGCTGAAGATCGTGGAAAGGTATTAGGAAGACTGCAAAGTTCAGTCAGCGCAGGGTCTCTTGTGGGGCCATTAATTGGCGGTGTTACAGCTTCGATATTAGGTTTTAGTGCGTTACTGATGAGTATTGCCGTTATTACTTTTATTGTCTGTATTTTCGGTGCATTAAAATTGATTGAAACGACACATATGCCAAAATCACAAACACCAAATATTAATAAAGGTATTCGCCGTTCATTTCAATGTCTATTATGCACACAACAAACATGTCGATTTATTATCGTTGGCGTTTTAGCAAACTTTGCTATGTATGGCATGCTAACTGCATTATCACCACTTGCTTCATCAGTGAATCATACAGCGATAGATGACCGTAGTGTGATTGGATTTTTACAGTCCGCATTTTGGACGGCTTCGATATTAAGCGCGCCTTTATGGGGACGCTTTAATGATAAATCATATGTTAAATCAGTATATATATTTGCCACGATTGCATGTGGTTGTAGTGCGATACTGCAAGGTTTAGCGACGAATATAGAGTTTTTAATGGCTGCAAGAATACTTCAAGGATTAACATATAGTGCATTGATTCAAAGTGTCATGTTTGTTGTCGTGAATGCGTGTCATCAACAACTTAAAGGCACATTTGTTGGAACGACGAACAGTATGTTAGTTGTTGGTCAAATTATTGGCAGTCTTAGTGGCGCTGCCATTACAAGTTATACTACACCAGCTACTACGTTTATCGTTATGGGCGTAGTATTTGCAGTAAGTAGTTTATTTTTAATTTGTTCAACCATCACTAATCAAATCAACGATCACACATTAATGAAATTATGGGAGTTGAAACAAAAAAGTGCAAAATAA > 1087 HMPREF0782_1961 COG:_COG4264;_Pfam:_PF04183;_InterPro:_IPR007310 IucC_family_siderophore_biosynthesis_protein EFH24777.1 11 MQNHTAVNTAQTIILRDLVDALLFEDIAGIVSNSDITKENGQTLLIYERETQQIKIPVYFSALNMFRYESSQPITIEGRASKQPLTAAEFWQTIANMNCDLSHEWEVARVEEGLTTAATQLAKQLSELDLASHPFVMSEQFASLKDRPFHPLAKEKRGLREADYQVYQAELNQSFPLMVAAVKKTHMIHGDTANIDELENLTAPIKEQATDMLNDQGLSIDDYVLFPVHPWQYQHILPNVFAKEISEKLVVLLPLKFGDYLSSSSMRSLIDIGAPYNHVKVPFAMQSLGALRLTPTRYMKNGEQAEQLLRQLIEKDEALAKYVMVCDETAWWSYMGQDNDIFKDQLGHLTVQLRKYPEVLAKNDTQQLVSMAALAANDRTLYQMICGKDNISKNDVMTLFEDIAQVFLKVTLSFMQYGALPELHGQNILLSFEDGRVQKCVLRDHDTVRIYKPWLTAHQLSLPKYVVREDTPNTLINEDLETFFAYFQTLAVSVNLYAIIDAIQDLFGVSEHELMSLLKQILKNEVATISWVTTDQLAVRHILFDKQTWPFKQILLPLLYQRDSGGGSMPSGLTTVPNPMVTYD Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_subsp._aureus_ATCC_51811 Staphylococcus_aureus_subsp._aureus_ATCC_51811 ADVP01000042 20093..21349 Muzny,D.,_Qin,X.,_Deng,J.,_Jiang,H.,_Liu,Y.,_Qu,J.,_Song,X.-Z.,_Zhang,L.,_Thornton,R.,_Coyle,M.,_Francisco,L.,_Jackson,L.,_Javaid,M.,_Korchina,V.,_Kovar,C.,_Mata,R.,_Mathew,T.,_Ngo,R.,_Nguyen,L.,_Nguyen,N.,_Okwuonu,G.,_Ongeri,F.,_Pham,C.,_Simmons,D.,_Wilczek-Boney,K.,_Hale,W.,_Jakkamsetti,A.,_Pham,P.,_Ruth,R.,_San_Lucas,F.,_Warren,J.,_Zhang,J.,_Zhao,Z.,_Zhou,C.,_Zhu,D.,_Lee,S.,_Bess,C.,_Blankenburg,K.,_Forbes,L.,_Fu,Q.,_Gubbala,S.,_Hirani,K.,_Jayaseelan,J.C.,_Lara,F.,_Munidasa,M.,_Palculict,T.,_Patil,S.,_Pu,L.-L.,_Saada,N.,_Tang,L.,_Weissenberger,G.,_Zhu,Y.,_Hemphill,L.,_Shang,Y.,_Youmans,B.,_Ayvaz,T.,_Ross,M.,_Santibanez,J.,_Aqrawi,P.,_Gross,S.,_Joshi,V.,_Fowler,G.,_Nazareth,L.,_Reid,J.,_Worley,K.,_Petrosino,J.,_Highlander,S._and_Gibbs,R. NA 1249:>1257 Staphylococcus_aureus_subsp._aureus_ATCC_51811_Strain_source,_body_site:_airways,_nasal_Inquiries_should_be_directed_to_microbe@hgsc.bcm.tmc.edu_This_is_a_reference_genome_for_the_Human_Microbiome_Project._Thisproject_is_co-owned_with_the_Human_Microbiome_Project_DACC._This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_University_of_Arizona(Department_of_Veterinary_Science_and_Microbiology,_1117_E._LowellStreet,_Bldg_90_Room_218,_Tucson,_AZ,_85721)._The_genomic_DNA_wasprepared_from_a_single_bacterial_isolate._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data_and_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data._The_Roche/454_Lifesciences_sequencewas_assembled_using_the_Roche/454_Lifesciences_Newbler_assembler.The_contigs_from_the_Newbler_assembly_were_aligned_with_mappingtools_such_as_Mosaic_and_Crossmatch_and_these_data_were_used_forerror_correction_for_this_version_of_the_draft_assembly._This_draftassembly_meets_the_HMP_draft_quality_standards_(more_than_90%_ofthe_genome_is_included_in_contigs,_more_than_90%_of_a_core_set_ofbacterial_genes_are_found_with_>_30%_identity_and_>_30%_length;more_than_90%_of_the_bases_in_the_assembly_have_more_than_5_foldsequence_coverage,_the_contig_N50_length_is_greater_than_5kb,_thescaffold_N50_length_is_greater_than_20kb,_and_there_is_less_than_1gap_per_5kb).##Genome-Assembly-Data-START##Finishing_Goal_::_High-Quality_DraftCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_Assembler_v._2.0-01162009Genome_Coverage_::_26xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 26-MAY-2010 Staphylococcus_aureus_subsp._aureus_ATCC_51811_contig00063,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_D6UEL9_STAAU.gb Staphylococcus_Rosenbach_1884 296885821 Submitted_(19-APR-2010)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ADVP01000042 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1257 NA genomic_DNA NA ATCC_51811 NA Streptococcus_aureus NA complement NA NA NA NA NA NA Staphylococcus_aureus_subsp._aureus_Rosenbach_1884 NA NA NA prokaryotes NA 762962 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Direct_Submission NA ADVP01000042.1 TTATTTTGCACTTTTTTGTTTCAACTCCCATAATTTCATTAATGTGTGATCGTTGATTTGATTAGTGATGGTTGAACAAATTAAAAATAAACTACTTACTGCAAATACTACGCCCATAACGATAAACGTAGTAGCTGGTGTAGTATAACTTGTAATGGCAGCGCCACTAAGACTGCCAATAATTTGACCAACAACTAACATACTGTTCGTCGTTCCAACAAATGTGCCTTTAAGTTGTTGATGACACGCATTCACGACAACAAACATGACACTTTGAATCAATGCACTATATGTTAATCCTTGAAGTATTCTTGCAGCCATTAAAAACTCTATATTCGTCGCTAAACCTTGCAGTATCGCACTACAACCACATGCAATCGTGGCAAATATATATACTGATTTAACATATGATTTATCATTAAAGCGTCCCCATAAAGGCGCGCTTAATATCGAAGCCGTCCAAAATGCGGACTGTAAAAATCCAATCACACTACGGTCATCTATCGCTGTATGATTCACTGATGAAGCAAGTGGTGATAATGCAGTTAGCATGCCATACATAGCAAAGTTTGCTAAAACGCCAACGATAATAAATCGACATGTTTGTTGTGTGCATAATAGACATTGAAATGAACGGCGAATACCTTTATTAATATTTGGTGTTTGTGATTTTGGCATATGTGTCGTTTCAATCAATTTTAATGCACCGAAAATACAGACAATAAAAGTAATAACGGCAATACTCATCAGTAACGCACTAAAACCTAATATCGAAGCTGTAACACCGCCAATTAATGGCCCCACAAGAGACCCTGCGCTGACTGAACTTTGCAGTCTTCCTAATACCTTTCCACGATCTTCAGCTGGCGCCTCTGCACTCGCAAACGCACTTGATGCATCAACAACACCACCAAATAGTCCCTGCAATAACCTCACAAGTACAAACTGTAATGGTGTCGTACACAATGCCATTAAAAATAAGCATACCGCCAAACCAAGTAACGCTCTTAACACCATCCATTTCCGGCTAATCTTATCACCTAGCTTCCCCCATATCGGCGAAGCTATCATCGTCGTTACAGCTGGAGCAGCAATCGCTATACCACTCCACAACTGTATTTCTACAACTGATAGATTTTGTAGTGATGCCATATAAATTGGCAATAATGGCACAAGTACTGTCAGTCCAGCAATCGCTATAAACTGACTGAGCCATAAAATGCGAAAGTTACTGCGCCATATAGACTGATTAATCAT > 1088 SAOV_0067 NA IucA_family_siderophore_biosynthesis_protein ADI96608.1 11 MQNKELIQHAAYAAIERILNEYFREENLYQVPPQNHQWSIQLSDLETLTGQFAYWSAMGHHMYHPEVWLIDGKIKKLTTYKEAIARILQHMAQSADNQTAVQQHMAQIMSDIDNSIHRTARYLQSNTIDYAEDRYIVSEQSLYLGHPFHPTPKSASGFSEADLEKYAPECHTSFQLHYLAVHQDVLLTRYVEGKEDQVEKVLYQLADIDISEIPKDFILLPIHPYQINVLRQHPQYMQYSEQGLIKDLGVSGDSVYPTSSVRTVFSKALNIYLKLPIHVKITNFIRTNDLEQIERTIDAAQVIASVKDEVETPHFKLMFEEGYRALLPNPLGQTVEPEMDLLTNSAMIVREGIPNYHADKDIHVLASLFETMPDSPTSKLSQVIEQSGLAPEAWLECYLDRTLLPILKLFSNTGISLEAHVQNTLIELKDSIPDVCFVRDLEGICLSRTIATEKQLVPNVVAASSPVVYAHDEAWHRLKYYVVVNHLGHLVSTIGKATRNEVVLWQLVAHRLMTWKKEYANNAVFVDCVEDLYQTPTIAAKANLMSKLNDCGANPIYTHIPNPICHNKEVSYCESNNS Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_subsp._aureus_ED133 Staphylococcus_aureus_subsp._aureus_ED133 CP001996 82053..83309 Guinane,C.M.,_Ben_Zakour,N.L.,_Tormo-Mas,M.A.,_Weinert,L.A.,_Lowder,B.V.,_Cartwright,R.A.,_Smyth,D.S.,_Smyth,C.J.,_Lindsay,J.A.,_Gould,K.A.,_Witney,A.,_Hinds,J.,_Bollback,J.P.,_Rambaut,A.,_Penades,J.R._and_Fitzgerald,J.R. NA 1246:>1257 Source_DNA_and_Bacteria_are_available_from_Dr_Ross_Fitzgerald,_TheRoslin_Insitute_and_Centre_for_Infectious_Diseases,_University_ofEdinburgh_ross.fitzgerald@ed.ac.uk. NA 22-JUL-2010 Staphylococcus_aureus_subsp._aureus_ED133,_complete_genome. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_D8HDI2_STAAF.gb Staphylococcus_Rosenbach_1884 298693322 Genome_Biol_Evol_2,_454-466_(2010) NA CP001996 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 20624747 1257 NA genomic_DNA NA ED133 NA Streptococcus_aureus NA forward NA NA NA NA NA NA Staphylococcus_aureus_subsp._aureus_Rosenbach_1884 NA NA NA prokaryotes NA 685039 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Evolutionary_genomics_of_Staphylococcus_aureus_reveals_insights_into_the_origin_and_molecular_basis_of_ruminant_host_adaptation NA CP001996.1 ATGATTAATCAGTCTATATGGCGCAGTAACTTTCGCATTTTATGGCTCAGTCAGTTTATAGCGATTGCTGGACTGACAGTACTTGTGCCATTATTGCCAATTTATATGGCATCACTACAAAATCTATCAGTCGTAGAAATACAGTTGTGGAGTGGTATAGCGATTGCTGCTCCAGCTGTAACGACGATGATAGCTTCGCCGATATGGGGGAAGCTAGGTGATAAGATCAGTCGAAAATGGATGGTGTTAAGAGCGTTACTTGGTTTGGCGGTATGTTTATTTTTAATGGCATTGTGTACTACACCATTACAGTTTGTACTTGTGAGGTTATTGCAGGGACTATTTGGTGGTGTTGTTGATGCATCAAGTGCGTTTGCGAGTGCAGAGGCGCCAGCTGAAGATCGTGGAAAGGTATTAGGAAGACTGCAAAGTTCAGTCAGCGCAGGGTCTCTTGTGGGGCCATTAATTGGCGGTGTTACAGCTTCGATATTAGGTTTTAGTGCGTTACTGATGAGTATTGCCGTTATTACTTTTATTGTCTGTATTTTCGGTGCATTAAAATTGATTGAAACGACACATATGCCAAAATCACAAACACCAAATATTAATAAAGGTATTCGCCGTTCATTTCAATGTCTATTATGCACACAACAAACGTGTCGATTTATTATCGTTGGCGTTTTAGCAAACTTTGCTATGTATGGCATGCTAACTGCATTATCACCACTTGCTTCATCAGTGAATCATACAGCGATAGATGACCGTAGTGTGATTGGATTTTTACAGTCCGCATTTTGGACGGCTTCGATATTAAGCGCGCCTTTATGGGGTCGCTTTAATGATAAATCATATGTTAAATCAGTATATATATTTGCCACGATTGCATGTGGTTGTAGTGCGATACTGCAAGGTTTAGCGACGAATATAGAGTTTTTAATGGCTGCAAGAATACTTCAAGGATTAACATATAGCGCATTGATTCAAAGTGTCATGTTTGTTGTTGTAAATGCTTGTCATCAGCAACTTAAAGGCACATTTGTTGGAACGACGAACAGTATGTTAGTTATTGGTCAAATTATTGGTAGTCTTAGTGGCGCTGCCATTACAAGTTATACTACACCAGCTACTACGTTTATCGTTATGGGCATAGTATTTGCTGTAAGTAGTTTATTTTTAATTTGTTCAACCATCACTAATCAAATCAACGATCACACATTAATGAAATTATGGGAGTTGAAACAAAAAAGTGCAAAATAA > 1089 SAA6159_00103 NA siderophore_biosynthesis_protein,_IucA/IucC_family ADL22061.1 11 MQNKELIQHAAYAAIERILNEYFREENLYQVPPQNHQWSIQLSELETLTGEFRYWSAMGHHMYHPEVWLIDGKSKKITTYKEAIARILQHMAQSADNQTAVQQHMAQIMSDIDNSIHRTARYLQSNTIDYAEDRYIVSEQSLYLGHPFHPTPKSASGFSEADLEKYAPECHTSFQLHYLAVHQDVLLTRYVEGKEDQVEKVLYQLADIDISEIPKDFILLPIHPYQINVLRQYPQYMQYSEQGLIKDLGVSGDSVYPTSSVRTVFSKALNIYLKLPIHVKITNFIRTNDLEQIERTIDAAQVIASVKDEVETPHFKLMFEEGYRALLPNPLGQTVEPEMDLLTNSAMIVREGIPNYHADKDIHVLASLFETMPDSPTSKLSQVIEQSGLAAEAWLECYLDRTLLPILKLFSNTGISLEAHVQNTLIELKDGIPEVCYVRDLEGICLSRTIATEKQLVPNVVAASSPVVYAHDEAWHRLKYYVVVNHLGHLVSTIGKATRNEVVLWKLVAHRLMTWKKEYANNAVFVACVEDLYQKPTIAAKANLMSKLNDCGANPIYTHIPNPICHNKEVSYCESNNS Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_subsp._aureus_JKD6159 Staphylococcus_aureus_subsp._aureus_JKD6159 CP002114 116057..117313 Chua,K.,_Seemann,T.,_Harrison,P.F.,_Davies,J.K.,_Coutts,S.J.,_Chen,H.,_Haring,V.,_Moore,R.,_Howden,B.P._and_Stinear,T.P. NA 1246:>1257 On_Aug_23,_2010_this_sequence_version_replaced_gi:302331772.Bacteria_and_source_DNA_are_available_from_Dr_Benjamin_Howden(benjamin.howden@austin.org.au). NA 01-OCT-2010 Staphylococcus_aureus_subsp._aureus_JKD6159,_complete_genome. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_D9RCP1_STAAJ.gb Staphylococcus_Rosenbach_1884 304365608 J._Bacteriol._192_(20),_5556-5557_(2010) NA CP002114 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 20729356 1257 NA genomic_DNA NA JKD6159 NA Streptococcus_aureus NA forward NA NA NA NA NA NA Staphylococcus_aureus_subsp._aureus_Rosenbach_1884 NA NA NA prokaryotes NA 869816 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Complete_Genome_Sequence_of_Staphylococcus_aureus_Strain_JKD6159,_a_Unique_Australian_Clone_of_ST93-IV_Community_Methicillin-Resistant_Staphylococcus_aureus NA CP002114.2 ATGATTAATCAGTCTATATGGCGCAGTAACTTTCGCATTTTATGGCTCAGTCAGTTTATAGCGATTGCTGGACTGACAGTACTTGTGCCATTATTGCCAATTTATATGGCATCACTACAAAATCTATCAGTCGTAGAAATACAGTTGTGGAGTGGTATAGCGATTGCTGCTCCAGCTGTAACGACGATGATAGCTTCGCCGATATGGGGGAAGCTAGGTGATAAGATTAGCCGAAAATGGATGGTGTTAAGAGCGTTACTTGGTTTGGCGGTATGCTTATTTTTAATGGCATGGTGTACTACACCATTACAGTTTGTACTTGTGAGGTTATTGCAGGGACTATTTGGTGGTGTTGTTGATGCATCAAGTGCGTTTGCGAGTGCAGAGGCGCCGGCTGAAGATCGTGGAAAAGTATTAGGAAGATTACAAAGTTCAGTCAGTGCAGGGTCTCTTGTAGGACCATTAATCGGCGGTGTTACAGCTTCGATATTAGGTTTTAGTGCGTTACTGATGAGTATTGCCGTTATTACTTTTATTGTCTGTATTTTCGGTGCATTAAAATTGATTGAAACGACACATATGCCAAAATCACAAACACCAAATATTAATAAAGGTATTCGCCGTTCATTTCAATGTCTATTATGCACGCAACAAACATGTCGATTTATTATCGTTGGCGTTTTAGCAAACTTTGCTATGTATGGCATGCTAACTGCATTATCACCACTTGCTTCATCAGTGAATCATACAGCGATAGATGACCGTAGTGTGATTGGATTTTTACAGTCCGCATTTTGGACGGCTTCGATATTAAGCGCGCCTTTATGGGGTCGCTTTAATGATAAATCATATGTTAAATCAGTATATATATTTGCCACGATTGCATGTGGTTGTAGTGCGATACTGCAAGGTTTAGCGACGAATATAGAGTTTTTAATGGCTGCAAGAATACTTCAAGGATTAACATATAGTGCATTGATTCAAAGTGTCATGTTTGTTGTTGTAAATGCTTGTCATCAGCAACTTAAAGGCACATTTGTTGGAACGACGAACAGTATGTTAGTTATTGGTCAAATTATTGGTAGTCTTAGTGGCGCTGCCATTACAAGTTATACTACACCAGCTACTACGTTTATCGTTATGGGCATAGTATTTGCTGTAAGTAGTTTATTTTTAATTTGTTCAACCATCACTAATCAAATCAACGATCACACATTAATGAAATTATGGGAGTTGAAACAAAAAAGTGCAAAATAA > 1090 HMPREF0783_1092 COG:_COG4264;_Pfam:_PF04183;_InterPro:_IPR007310 staphylobactin_siderophore_biosynthesis_protein_SbnE EFM07263.1 11 MQNKELIQHAAYAAIERILNEYFREENLYQVPPQNHQWSIQLSELETLTGQFAYWSAMGHHMYHPEVWLIDGKSKKLTTYKEAIARILQHMAQSADNQTAVQQHMAQIMSDIDNSIHRTARYLQSNTIDYAEDRYIVSEQSLYLGHPFHPTPKSASGFSEADLEKYAPECHTSFQLHYLAVHQDVLLTRYVEGKEDQVEKVLYQLADIDISEIPKDFILLPIHPYQINVLRQHPQYMQYSEQGLIKDLGVSGDSVYPTSSVRTVFSKALNIYLKLPIHVKITNFIRTNDLEQIERTIDAAQVIASVKDEVETPHFKLMFEEGYRALLPNPLGQTVEPEMDLLTNSAMIVREGIPNYHADKDIHVLASLFETMPDSPTSKLSQVIEQSGLAPEAWLECYLDRTLLPILKLFSNTGISLEAHVQNTLIELKDGIPEVCYVRDLEGICLSRTIATEKQLVPNVVAASSPVVYAHDEAWHRLKYYVVVNHLGHLVSTIGKATRNEVVLWKLVAHRLMTWKKEYANNAVFIDCVEDLYQTPTIAAKANLMSKLNDCGANPIYTHIPNPICHNKEVSYCESNNS Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_subsp._aureus_ATCC_BAA-39 Staphylococcus_aureus_subsp._aureus_ATCC_BAA-39 AEEK01000044 9389..10645 Muzny,D.,_Qin,X.,_Deng,J.,_Jiang,H.,_Liu,Y.,_Qu,J.,_Song,X.-Z.,_Zhang,L.,_Thornton,R.,_Coyle,M.,_Francisco,L.,_Jackson,L.,_Javaid,M.,_Korchina,V.,_Kovar,C.,_Mata,R.,_Mathew,T.,_Ngo,R.,_Nguyen,L.,_Nguyen,N.,_Okwuonu,G.,_Ongeri,F.,_Pham,C.,_Simmons,D.,_Wilczek-Boney,K.,_Hale,W.,_Jakkamsetti,A.,_Pham,P.,_Ruth,R.,_San_Lucas,F.,_Warren,J.,_Zhang,J.,_Zhao,Z.,_Zhou,C.,_Zhu,D.,_Lee,S.,_Bess,C.,_Blankenburg,K.,_Forbes,L.,_Fu,Q.,_Gubbala,S.,_Hirani,K.,_Jayaseelan,J.C.,_Lara,F.,_Munidasa,M.,_Palculict,T.,_Patil,S.,_Pu,L.-L.,_Saada,N.,_Tang,L.,_Weissenberger,G.,_Zhu,Y.,_Hemphill,L.,_Shang,Y.,_Youmans,B.,_Ayvaz,T.,_Ross,M.,_Santibanez,J.,_Aqrawi,P.,_Gross,S.,_Joshi,V.,_Fowler,G.,_Nazareth,L.,_Reid,J.,_Worley,K.,_Petrosino,J.,_Highlander,S._and_Gibbs,R. NA 1246:>1257 Staphylococcus_aureus_subsp._aureus_ATCC_BAA-39_Strain_source,_body_site:_Airways,_nasal_Inquiries_should_be_directed_to_microbe@hgsc.bcm.tmc.edu_This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_ATCC._The_genomic_DNA_wasprepared_from_a_single_bacterial_isolate._The_sequence_generatedincluded_at_least_10_fold_coverage_of_Roche/454_Lifesciences_FLXfragment_data_and_at_least_8_fold_clone_coverage_of_Roche/454Lifesciences_paired-end_data._The_Roche/454_Lifesciences_sequencewas_assembled_using_the_Roche/454_Lifesciences_Newbler_assembler.The_contigs_from_the_Newbler_assembly_were_aligned_with_mappingtools_such_as_Mosaic_and_Crossmatch_and_these_data_were_used_forerror_correction_for_this_version_of_the_draft_assembly._This_draftassembly_meets_the_HMP_draft_quality_standards_(more_than_90%_ofthe_genome_is_included_in_contigs,_more_than_90%_of_a_core_set_ofbacterial_genes_are_found_with_>_30%_identity_and_>_30%_length;more_than_90%_of_the_bases_in_the_assembly_have_more_than_5_foldsequence_coverage,_the_contig_N50_length_is_greater_than_5kb,_thescaffold_N50_length_is_greater_than_20kb,_and_there_is_less_than_1gap_per_5kb).##Genome-Assembly-Data-START##Finishing_Goal_::_Standard_DraftCurrent_Finishing_Status_::_Standard_DraftAssembly_Method_::_Newbler_Assembler_v._2.3-10192009Genome_Coverage_::_27.9xSequencing_Technology_::_454##Genome-Assembly-Data-END## NA 20-AUG-2010 Staphylococcus_aureus_subsp._aureus_ATCC_BAA-39_contig00074,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_E0P5Y2_STAAU.gb Staphylococcus_Rosenbach_1884 304341336 Submitted_(27-JUL-2010)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA AEEK01000044 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1257 NA genomic_DNA NA ATCC_BAA-39 NA Streptococcus_aureus NA forward NA NA NA NA NA NA Staphylococcus_aureus_subsp._aureus_Rosenbach_1884 NA NA NA prokaryotes NA 862516 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Direct_Submission NA AEEK01000044.1 ATGATTAATCAGTCTATATGGCGCAGTAACTTTCGCATTTTATGGCTCAGTCAGTTTATAGCGATTGCTGGACTGACAGTACTTGTGCCATTATTGCCAATTTATATGGCATCACTACAAAATCTATCAGTCGTAGAAATACAGTTGTGGAGTGGTATAGCGATTGCTGCTCCAGCTGTAACGACGATGATAGCTTCGCCGATATGGGGGAAGCTAGGTGATAAGATCAGTCGAAAATGGATGGTGCTACGAGCGTTACTTGGTTTGGCGGTATGTTTATTTTTAATGGCATTGTGTACTACACCATTACAGTTTGTACTTGTGAGGTTATTGCAGGGACTATTTGGTGGTGTTGTTGATGCATCAAGTGCGTTTGCGAGTGCAGAGGCGCCAGCTGAAGATCGTGGAAAGGTATTAGGAAGACTGCAAAGTTCAGTCAGCGCAGGGTCTCTTGTGGGACCATTAATTGGCGGTGTTACAGCTTCGATATTAGGTTTTAGTGCGTTACTGATGAGTATTGCCGTTATTACTTTTATTGTCTGTATTTTCGGTGCATTAAAATTGATTGAAACGACACATATGCCAAAATCACAAACACCAAATATTAATAAAGGTATTCGCCGTTCATTTCAATGTCTATTATGCACACAACAAACATGTCGATTTATTATCGTTGGCGTTTTAGCAAACTTTGCTATGTATGGCATGCTAACTGCATTATCACCACTTGCTTCATCAGTGAATCATACAGCGATAGATGACCGTAGTGTGATTGGATTTTTACAGTCCGCATTTTGGACGGCTTCGATATTAAGCGCGCCTTTATGGGGTCGCTTTAATGATAAATCATATGTTAAATCAGTATATATATTTGCCACGATTGCATGTGGTTGTAGTGCGATACTGCAAGGTTTAGCGACGAATGTAGAATTTTTAATGGCTGCAAGAATACTTCAAGGATTAACATATAGTGCATTGATTCAAAGTGTCATGTTTGTCGTCGTGAATGCGTGTCATCAACAACTTAAAGGCACATTTGTTGGTACGACAAATAGTATGTTAGTTATTGGTCAAATTATTGGTAGTCTTAGTGGCGCTGCCATTACAAGTTATACTACACCAGCTACTACGTTTATCGTTATGGGCATAGTATTTGCTGTAAGTAGTTTATTTTTAATTTGTTCAACCATCACTAATCAAATCAACGATCACACATTAATGAAATTATGGGAGTTGAAACAAAAAAGTGCAAAATAA > 1091 ECTR2_76 NA iucA_/_IucC_family_protein CBX33479.1 11 MQNKELIQHAAYAAIERILNEYFREENLYQVPPQNHQWSIQLSELETLTGEFRYWSAMGHHMYHPEVWLIDGKSKKITTYKEAIARILQHMAQSADNQTAVQQHMAQIMSDIDNSIHRTARYLQSNTIDYVEDRYIVSEQSLYLGHPFHPTPKSASGFSEADLEKYAPECHTSFQLHYLAVHQDVLLTRYVEGKEDQVEKVLYQLADIDISEIPKDFILLPTHPYQINVLRQHPQYMQYSEQGLIKDLGVSGDLVYPTSSVRTVFSKALNIYLKLPIHVKITNFIRTNDLEQIERTIDAAQVIASVKDEVETPHFKLMFEEGYRALLPNPLGQTVEPEMDLLTNSAMIVREGIPNYHADKDIHVLASLFETMPDSPISKLAQVIEQSGLAPEAWLECYLDRTLLPILKLFSNTGISLEAHVQNTLIELKDGIPDVCFVRDLEGICLSRTIATEKQLVPNVVAASSPVVYAHDEAWHRLKYYVVVNHLGHLVSTIGKATRNEVVLWQLVAHRLMTWKKEYANNAVFVDCVEDLYQTPTIAAKANLMSKLNDCGANPIYTHIPNPICYNKEVSYCESNNS Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_subsp._aureus_ECT-R_2 Staphylococcus_aureus_subsp._aureus_ECT-R_2 FR714927 91760..93016 Lindqvist,M.,_Isaksson,B.,_Grub,C.,_Jonassen,T.O._and_Hallgren,A. NA 1246:>1257 NA NA 21-NOV-2011 Staphylococcus_aureus_subsp._aureus_ECT-R_2_complete_genome. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_E5R5P5_STAAG.gb Staphylococcus_Rosenbach_1884 312828563 Eur._J._Clin._Microbiol._Infect._Dis._31_(2),_141-147_(2012) NA FR714927 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 21590357 1257 NA genomic_DNA NA NA NA Streptococcus_aureus NA forward NA NA NA NA NA NA Staphylococcus_aureus_subsp._aureus_Rosenbach_1884 NA NA NA prokaryotes NA 889933 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Detection_and_characterisation_of_SCCmec_remnants_in_multiresistant_methicillin-susceptible_Staphylococcus_aureus_causing_a_clonal_outbreak_in_a_Swedish_county NA FR714927.1 ATGATTAATCAGTCTATATGGCGCAGTAACTTTCGCATTTTATGGCTCAGTCAGTTTATAGCGATTGCTGGACTGACAGTACTTGTGCCATTATTGCCAATTTATATGGCATCACTACAAAATCTATCAGTCGTAGAAATACAGTTGTGGAGTGGTATAGCGATTGCTGCTCCAGCTGTAACGACGATGATAGCTTCGCCGATATGGGGGAAGCTAGGTGATAAGATCAGCCGAAAATGGATGGTCTTAAGAGCGTTACTTGGTTTGGCGGTATGCTTATTTTTAATGGCATTGTGTACGACACCATTACAGTTTGTACTTGTGAGGTTATTGCAGGGACTATTTGGTGGTGTTGTTGATGCATCAAGTGCGTTTGCGAGTGCAGAGGCGCCAGCTGAAGATCGTGGAAAGGTATTAGGAAGACTGCAAAGTTCAGTCAGCGCAGGGTCTCTTGTGGGGCCATTAATTGGCGGTGTTACAGCTTCGATATTAGGTTTTAGTGCGTTACTGATGAGTATTGCCGTTATTACTTTTATTGTCTGTATTTTCGGTGCATTAAAATTGATTGAAACGACACATATGCCAAAATCACAAACACCAAATATTAATAAAGGTATTCGCCGTTCATTTCAATGTCTATTATGCACACAACAAACATGTCGATTTATTATCGTTGGCGTTTTAGCAAACTTTGCTATGTATGGCATGCTAACTGCATTATCACCACTTGCTTCATCAGTGAATCATACAGCGATAGATGACCGTAGTGTGATTGGATTTTTACAGTCCGCATTTTGGACGGCTTCGATATTAAGCGCGCCTTTATGGGGACGCTTTAATGATAAATCATATGTTAAATCAGTATATATATTTGCCACGATTGCATGTGGTTGTAGTGCGATACTGCAAGGTTTAGCGACGAATATAGAGTTTTTAATGGCTGCAAGAATACTTCAAGGATTAACATATAGTGCATTGATTCAAAGTGTCATGTTTGTTGTCGTGAATGCGTGTCATCAACAACTTAAAGGCACATTTGTTGGAACGACGAACAGTATGTTAGTTGTTGGTCAAATTATTGGCAGTCTTAGTGGCGCTGCCATTACAAGTTATACTACACCAGCTACTACGTTTATCGTTATGGGCGTAGTATTTGCAGTAAGTAGTTTATTTTTAATTTGTTCAACCATCACTAATCAAATCAACGATCACACATTAATGAAATTATGGGAGTTGAAACAAAAAAGTGCAAAATAA > 1092 ECTR2_1599 NA major_Facilitator_Superfamily_protein CBX34979.1 11 MALNITGSSFLWPLNTIYMKQELGKSLTVAGLVLMINSFGMVIGNLLGGSLFDKLGGYKTILIGTFTCLCSTTLLNFFHGWPWYAVWLVMLGFGGGMIIPAIYAMAGAVWPNGGRQTFNAIYLAQNIGVAVGAAMGGFVAEFSFNYIFLANLIMYVVFALVAVTQFNIEINAKVKYPTHLDITGKKNKARFISLVLICAMFAICWVAYIQWESTIASFTQSINISMAQYSVLWTINGIMILVAQPLIKPVLYLLKGNLKKQMFVGIIIFMLSFFVTSFAENFTIFVVGMIILTFGEMFVWPAVPTIANQLAPDGKQGQYQGFVNSAATVGKAFGPFLGGVLVDAFNMRMMFIGMMLLLVFALILLMVFKENNTQPKKIDA Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_subsp._aureus_ECT-R_2 Staphylococcus_aureus_subsp._aureus_ECT-R_2 FR714927 1765095..1766237 Lindqvist,M.,_Isaksson,B.,_Grub,C.,_Jonassen,T.O._and_Hallgren,A. NA 0:1143 NA NA 21-NOV-2011 Staphylococcus_aureus_subsp._aureus_ECT-R_2_complete_genome. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_E5R7B4_STAAG.gb Staphylococcus_Rosenbach_1884 312828563 Eur._J._Clin._Microbiol._Infect._Dis._31_(2),_141-147_(2012) NA FR714927 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 21590357 1143 NA genomic_DNA NA NA NA Streptococcus_aureus NA complement NA NA NA NA NA NA Staphylococcus_aureus_subsp._aureus_Rosenbach_1884 NA NA NA prokaryotes NA 889933 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Detection_and_characterisation_of_SCCmec_remnants_in_multiresistant_methicillin-susceptible_Staphylococcus_aureus_causing_a_clonal_outbreak_in_a_Swedish_county NA FR714927.1 TTATGCATCTATTTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAAGTAGTAGCATCATACCGATAAACATCATGCGCATATTAAACGCATCAACTAATACACCACCAAGAAATGGACCAAATGCTTTTCCTACTGTAGCAGCTGAATTCACAAAACCTTGGTACTGTCCTTGCTTACCATCTGGCGCTAACTGATTGGCTATAGTTGGAACTGCTGGCCATACAAACATTTCTCCAAAAGTTAAAATAATCATACCGACAACAAATATTGTAAAGTTTTCGGCAAAACTCGTGACAAAGAACGACAACATAAAAATGATGATGCCGACAAACATTTGCTTCTTTAAGTTTCCTTTTAACAGATAGAGAACCGGTTTAATTAATGGTTGTGCTACTAAAATCATTATTCCGTTAATTGTCCATAAAACACTATATTGTGCCATTGAAATATTAATAGATTGTGTAAATGATGCGATTGTAGACTCCCATTGAATATACGCAACCCAACAAATTGCAAACATTGCACAAATTAGTACTAATGAAATAAATCTTGCTTTATTCTTTTTACCAGTAATATCTAAATGAGTTGGATATTTAACTTTCGCATTAATTTCAATATTAAATTGCGTTACCGCGACAAGCGCAAACACAACATACATAATAAGATTGGCTAAAAAGATATAGTTAAAGCTAAATTCTGCGACAAAGCCGCCCATTGCAGCACCGACAGCCACACCAATATTTTGCGCTAAGTATATCGCATTAAACGTTTGTCTTCCGCCATTCGGCCACACTGCTCCAGCCATAGCGTATATCGCAGGAATAATCATTCCGCCACCAAAGCCTAACATTACAAGCCATACAGCATACCAAGGCCACCCGTGAAAGAAATTAAGTAGCGTTGTACTACAAAGACAAGTGAAAGTTCCAATTAAAATCGTCTTGTATCCACCTAATTTATCAAATAGTGAACCACCTAATAAGTTTCCAATAACCATGCCAAATGAATTTATCATTAGCACTAAACCAGCAACAGTTAAACTTTTTCCAAGTTCTTGTTTCATATAAATTGTATTTAAAGGCCACAAAAAACTGGAACCAGTAATATTTAACGCCAT > 1093 SACOL1809 identified_by_match_to_protein_family_HMM_PF07690 drug_transporter YP_186642.1 11 MNIPKSVWWLVIGMALNITGSSFLWPLNTIYMKQELGKSLTVAGLVLMINSFGMVIGNLLGGSLFDKLGGYKTILIGTFTCLCSTTLLNFFHGWPWYAVWLVMLGFGGGMIIPAIYAMAGAVWPNGGRQTFNAIYLAQNIGVAVGAAMGGFVAEFSFNYIFLANLIMYVVFALVAVTQFNIEINAKVKYPTHLDITGKKNKARFISLVLICAMFAICWVAYIQWESTIASFTQSINISMAQYSVLWTINGIMILVAQPLIKPILYLLKGNLKKQMFVGIIIFMLSFFVTSFAENFTIFVVGMIILTFGEMFVWPAVPTIANQLAPDGKQGQYQGFVNSAATVGKAFGPFLGGVLVDAFNMRMMFIGMMLLLVFALILLMVFKENNTQPKKIDA Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus_subsp._aureus_COL Staphylococcus_aureus_subsp._aureus_COL NC_002951 1865521..1866702 Gill,S.R.,_Fouts,D.E.,_Archer,G.L.,_Mongodin,E.F.,_Deboy,R.T.,_Ravel,J.,_Paulsen,I.T.,_Kolonay,J.F.,_Brinkac,L.,_Beanan,M.,_Dodson,R.J.,_Daugherty,S.C.,_Madupu,R.,_Angiuoli,S.V.,_Durkin,A.S.,_Haft,D.H.,_Vamathevan,J.,_Khouri,H.,_Utterback,T.,_Lee,C.,_Dimitrov,G.,_Jiang,L.,_Qin,H.,_Weidman,J.,_Tran,K.,_Kang,K.,_Hance,I.R.,_Nelson,K.E._and_Fraser,C.M. NA 0:1182 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000046.On_Jan_13,_2005_this_sequence_version_replaced_gi:20070509.COMPLETENESS:_full_length. NA 19-JAN-2012 Staphylococcus_aureus_subsp._aureus_COL_chromosome,_complete_genome. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_Q5HF15_STAAC.gb Staphylococcus_Rosenbach_1884 57650036 J._Bacteriol._187_(7),_2426-2438_(2005) NA NC_002951 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 15774886 1182 NA genomic_DNA NA COL NA Streptococcus_aureus NA complement NA NA NA NA NA NA Staphylococcus_aureus_subsp._aureus_Rosenbach_1884 NA NA NA prokaryotes NA 93062 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Insights_on_evolution_of_virulence_and_resistance_from_the_complete_genome_analysis_of_an_early_methicillin-resistant_Staphylococcus_aureus_strain_and_a_biofilm-producing_methicillin-resistant_Staphylococcus_epidermidis_strain NA NC_002951.2 TTATGCATCTATTTTTTTAGGTTGCGTATTATTCTCCTTGAAAACCATTAATAATATTAATGCAAATACAAGTAGTAGCATCATACCGATAAACATCATGCGCATATTAAACGCATCAACTAATACACCACCAAGAAATGGACCAAATGCTTTTCCTACTGTAGCAGCTGAATTCACAAAACCTTGGTACTGTCCTTGCTTACCATCTGGCGCTAACTGATTGGCTATAGTTGGAACTGCTGGCCATACAAACATTTCTCCAAAAGTTAAAATAATCATACCGACAACAAATATTGTAAAGTTTTCGGCAAAACTCGTGACAAAGAACGACAACATAAAAATGATGATGCCGACAAACATTTGCTTCTTTAAGTTTCCTTTTAACAGATAGAGAATCGGTTTAATTAATGGTTGTGCTACTAAAATCATTATTCCGTTAATTGTCCATAAAACACTATATTGTGCCATTGAAATATTAATAGATTGTGTAAATGAAGCGATTGTAGACTCCCATTGAATATATGCAACCCAACAAATTGCAAACATTGCACAAATTAGTACTAATGAAATAAATCTTGCTTTATTCTTTTTACCAGTAATATCTAAATGAGTTGGATATTTAACTTTCGCATTAATTTCAATATTAAATTGCGTTACCGCGACAAGCGCAAACACAACATACATAATAAGATTGGCTAAAAAGATATAGTTAAAGCTAAATTCTGCGACAAAGCCGCCCATTGCAGCACCGACAGCCACACCAATATTTTGCGCTAAGTATATCGCATTAAACGTTTGTCTTCCGCCATTTGGCCACACTGCTCCAGCCATAGCGTATATCGCAGGAATAATCATTCCGCCACCAAACCCTAACATTACAAGCCATACAGCATACCAAGGCCACCCGTGAAAGAAATTAAGTAGCGTTGTACTACAAAGACAAGTGAAAGTTCCAATTAAAATCGTCTTGTATCCACCTAATTTATCAAATAGTGAACCACCTAATAAGTTTCCAATAACCATGCCAAATGAATTTATCATTAGCACTAAACCAGCAACAGTTAAACTTTTTCCAAGTTCTTGTTTCATATAAATTGTATTTAAAGGCCACAAAAAACTGGAACCAGTAATATTTAACGCCATGCCAATTACTAGCCACCAGACTGATTTAGGTATATTCAT > 1094 NA siderophore_biosynthesis_protein SbnE AAP82067.1 11 MQNKELIQHAAYAAIERILNEYFREENLYQVPPQNHQWSIQLSELETLTGEFRYWSAMGHHMYHPEVWLIDGKSKKITTYKEAIARILQHMAQSADNQTAVQQHMAQIMSDIDNSIHRTARYLQSNTIDYVEDRYIVSEQSLYLGHPFHPTPKSASGFSEADLEKYAPECHTSFQLHYLAVHQDVLLTRYVEGKEDQVEKVLYQLADIDISEIPKDFILLPTHPYQINVLRQHPQYMQYSEQGLIKDLGVSGDSVYPTSSVRTVFSKALNIYLKLPIHVKITNFIRTNDLEQIERTIDAAQVIASVKDEVETPHFKLMFEEGYRALLPNPLGQTVEPEMDLLTNSAMIVREGIPNYHADKDIHVLASLFETMPDSPMSKLSQVIEQSGLAPEAWLECYLNRTLLPILKLFSNTGISLEAHVQNTLIELKDGIPDVCFVRDLEGICLSRTIATEKQLVPNVVAASSPVVYAHDEAWHRLKYYVVVNHLGHLVSTIGKATRNEVVLWQLVAHRLMTWKKEYANNAVFVDCVEDLYQTPTIAAKANLMSKLNDCGANPIYTHIPNPICHNKEVSYCESNNS Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_aureus Staphylococcus_aureus AY251022 7101..8357 Dale,S.E.,_Doherty-Kirby,A.,_Lajoie,G._and_Heinrichs,D.E. NA 1246:>1257 NA NA 22-DEC-2003 Staphylococcus_aureus_sir_and_sbn_operons,_complete_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_aureus_Q6X7U4_STAAU.gb Staphylococcus_Rosenbach_1884 32441983 Infect._Immun._72_(1),_29-37_(2004) NA AY251022 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 14688077 1257 NA genomic_DNA NA NA NA Streptococcus_aureus NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 1280 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Role_of_siderophore_biosynthesis_in_virulence_of_Staphylococcus_aureus:_identification_and_characterization_of_genes_involved_in_production_of_a_siderophore NA AY251022.1 ATGATTAATCAGTCTATATGGCGCAGTAACTTTCGCATTTTATGGCTCAGTCAGTTTATAGCGATTGCTGGACTGACAGTACTTGTGCCATTATTGCCAATTTATATGGCATCACTACAAAATCTATCAGTCGTAGAAATACAGTTGTGGAGTGGTATAGCGATTGCTGCTCCAGCTGTAACGACGATGATAGCTTCGCCGATATGGGGGAAGCTAGGTGATAAGATCAGCCGAAAATGGATGGTGTTAAGAGCGTTACTTGGTTTGGCGGTATGCTTATTTTTAATGGCATTGTGTACGACACCATTACAGTTTGTACTTGTGAGGTTATTGCAGGGACTATTTGGTGGTGTTGTTGATGCATCAAGTGCGTTTGCGAGTGCAGAGGCGCCAGCTGAAGATCGTGGAAAGGTATTAGGAAGACTGCAAAGTTCAGTCAGCGCAGGGTCTCTTGTGGGGCCATTAATTGGCGGTGTTACAGCTTCGATATTAGGTTTTAGTGCGTTACTGATGAGTATTGCCGTTATTACTTTTATTGTCTGTATTTTCGGTGCATTAAAATTGATTGAAACGACACATATGCCAAAATCACAAACACCAAATATTAATAAAGGTATTCGCCGTTCATTTCAATGTCTATTATGCACACAACAAACATGTCGATTTATTATCGTTGGCGTTTTAGCAAACTTTGCTATGTATGGCATGCTAACTGCATTATCACCACTTGCTTCATCAGTGAATCATACAGCGATAGATGACCGTAGTGTGATTGGATTTTTACAGTCCGCATTTTGGACGGCTTCGATATTAAGCGCGCCTTTATGGGGACGCTTTAATGATAAATCATATGTTAAATCAGTATATATATTTGCCACGATTGCATGTGGTTGTAGTGCGATACTGCAAGGTTTAGCGACGAATATAGAGTTTTTAATGGCTGCAAGAATACTTCAAGGATTAACATATAGTGCATTGATTCAAAGTGTCATGTTTGTTGTCGTGAATGCGTGTCATCAACAACTTAAAGGCACATTTGTTGGAACGACGAACAGTATGTTAGTTGTTGGTCAAATTATTGGCAGTCTTAGTGGCGCTGCCATTACAAGTTATACTACACCAGCTACTACGTTTATCGTTATGGGCGTAGTATTTGCAGTAAGTAGTTTATTTTTAATTTGTTCAACCATCACTAATCAAATCAACGATCACACATTAATGAAATTATGGGAGTTGAAACAAAAAAGTGCAAAATAA > 1095 STACA0001_1401 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_family_transporter EEE49377.1 11 MEIVKNKNDLFRIIDHADQKHTSKILLFMILGTIFLDAYDITILGTMTDQLTKEFHLSPTMLSVVMTSLPIGALFGAILGGSLAHKFGRKRILSVSLLILVITSLGAALAPHLAILLICRFIMGFAIGMDSPVAFTFIAEISNKWQKGRNVNYWQVVWYVAIVASALVVIAFFLMGTGEHLWRFAVGFGALIALVLYILRINYLKESPTWMINHHSLKEATKYVRNNYDVDLKLEGTGESFSESKSSKPSGTEIFKPKYLKRIVLATAISTLQGMQYYGVGLYIPIIATYIISKDKLGVLLGTAIVNIAGIIGAYVGSQLTYKVGTRRLTMIGFSLVLIAMVMTGLFYHSLPMIINTFLIALFLFGHSGGPGTQGKTIAALSFPTYLRSQATGFVESVSRTGSIIGTFVFPIILATVGLTNTMLILAIVPLVGLIITTALRWEVVGKNVEDE Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_capitis_SK14 Staphylococcus_capitis_SK14 ACFR01000004 81613..82971 Madupu,R.,_Durkin,A.S.,_Torralba,M.,_Methe,B.,_Sutton,G.G.,_Strausberg,R.L._and_Nelson,K.E. NA 0:1359 This_is_reference_genome_for_the_Human_Microbiome_Project.Genome_coverage:_10-20X. NA 03-FEB-2009 Staphylococcus_capitis_SK14_contig00011,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_capitis_B9CSI4_STACP.gb Staphylococcus_Rosenbach_1884 222443117 Submitted_(02-SEP-2008)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ACFR01000004 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1359 NA genomic_DNA NA SK14 NA Staphylococcus_capitis_Kloos_and_Schleifer_1975 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 553212 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Direct_Submission NA ACFR01000004.1 TTACTCGTCCTCTACATTCTTTCCAACAACTTCCCATCTCAATGCAGTCGTAATAATTAAACCAACTAAAGGAACGATGGCTAAGATAAGCATCGTATTTGTTAATCCCACAGTTGCAAGTATAATCGGAAATACAAATGTACCGATAATACTTCCCGTACGACTTACTGATTCTACGAAACCAGTAGCTTGTGAGCGTAAATATGTTGGGAATGATAAAGCCGCAATCGTCTTACCTTGTGTACCAGGTCCACCAGAATGTCCAAATAAGAACAATGCGATTAAGAATGTATTGATAATCATTGGTAAACTGTGATAGAACAAGCCCGTCATAACCATCGCGATTAACACAAGACTGAAACCAATCATTGTGAGTCGGCGTGTACCTACCTTATATGTCAGTTGTGATCCTACATAAGCACCAATAATACCTGCTATATTCACGATAGCTGTACCTAATAGCACGCCTAATTTATCTTTACTAATTATGTAAGTTGCAATTATTGGGATATATAATCCTACTCCATAGTACTGCATTCCCTGTAATGTTGAAATGGCTGTTGCTAGTACAATCCTTTTCAAATATTTAGGTTTAAATATTTCAGTACCAGATGGCTTTGAAGATTTACTCTCGGAAAATGACTCCCCCGTACCTTCAAGTTTTAAATCCACATCATAATTATTTCGTACATACTTGGTAGCTTCTTTAAGAGAGTGGTGATTAATCATCCAAGTTGGGCTCTCTTTTAAATAATTAATACGTAAAATGTAGAGTACTAAAGCAATCAAAGCACCAAAGCCAACTGCGAATCTCCATAAGTGTTCACCTGTACCCATTAAAAAGAAGGCGATTACTACTAGAGCTGAGGCAACGATTGCTACATACCATACAACCTGCCAATAGTTAACATTACGACCTTTCTGCCATTTATTACTAATTTCAGCAATGAAAGTGAATGCAACAGGACTATCCATACCGATAGCGAAGCCCATAATGAAGCGGCAGATAAGTAAAATAGCTAAATGAGGAGCAAGTGCTGCGCCTAAAGAAGTGATTACAAGGATAAGTAATGAGACAGATAATATACGCTTACGCCCGAATTTATGTGCAAGTGAACCCCCTAGAATGGCTCCAAAAAGTGCTCCAATAGGTAAGGAAGTCATAACCACTGAAAGCATTGTTGGAGATAGGTGGAATTCTTTCGTTAGCTGGTCTGTCATTGTCCCTAAAATGGTAATGTCATACGCATCTAAAAAAATCGTGCCTAATATCATAAAAAGAAGAATTTTAGATGTATGTTTCTGGTCTGCATGGTCGATAATTCTAAATAAATCATTTTTATTTTTTACGATTTCCAT > 1096 HMPREF0789_1621 Pfam:_PF07690;_InterPro:_IPR011701 transporter EES57746.1 11 MKIRDENMDFVKSKTDLFRLIDNEAQTSTSKMVLFLILGTIFLDAYDITILGTMTDQLTQQFHLSPATLSIVMTSLPIGALFGALLGGTLAHQFGRKRILSIALLTLTVTSLGAALAPNVIILIICRCIMGFAIGMDSPVAFTFIAEISNLKHKGRNVNYWQVVWYVAIVTSALVVTAFFMLGAGAHLWRYAVGFGALIAFVLYILRIKYLHESPTWVINHYSLEKATEFIRKYYHKDIHLEGTLEDDLNSDVTSPHNSWTDLFKPRYIKRIILATAISTLQGMQYYGVGLYIPIIATYLISKDKIGVLLGTAIVNIAGILGAYLGAQLTYKLGTRKLTMIGFTLVLLSMVCVGLFYHHLPMLLNTFLIGLFLFGHSGGPGTQGKTIGALSFPTHLRSQATGFVESVSRTGSIIGTFVFPIILATVGLTNTMLILSIVPLLGIIITVSIKWEAVGKHIEVE Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_epidermidis_BCM-HMP0060 Staphylococcus_epidermidis_BCM-HMP0060 ACHE01000062 3699..5084 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1386 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_Dr._Sheldon_Kaplan(contact_information:_Texas_Childrens_Hospital,_Department_ofPediatric_Infectious_Diseases,_1102_Bates_Street_#1150,_Houston,TX,_77030;_email:_slkaplan@TexasChildrensHospital.org)._Thegenomic_DNA_was_prepared_from_a_single_bacterial_isolate._Thesequence_generated_included_at_least_10_fold_coverage_of_Roche/454Lifesciences_FLX_fragment_data,_at_least_8_fold_clone_coverage_ofRoche/454_Lifesciences_paired-end_data_and_at_least_10_foldcoverage_of_Illumina/Solexa_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_to_the_Illumina/Solexa_data_withmapping_tools_such_as_Mosaic_and_Crossmatch_and_these_data_wereused_for_error_correction_for_this_version_of_the_draft_assembly.This_draft_assembly_meets_the_HMP_draft_quality_standards_(morethan_90%_of_the_genome_is_included_in_contigs,_more_than_90%_of_acore_set_of_bacterial_genes_are_found_with_>_30%_identity_and_>_30%length;_more_than_90%_of_the_bases_in_the_assembly_have_more_than_5fold_sequence_coverage,_the_contig_N50_length_is_greater_than_5kb,the_scaffold_N50_length_is_greater_than_20kb,_and_there_is_lessthan_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_40xSequencing_Technology:_454;_ABI;_Solexa/IlluminaAnnotation_was_added_to_the_contigs_in_July_2009. NA 07-JUL-2009 Staphylococcus_epidermidis_BCM-HMP0060_contig00080,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_epidermidis_C5QAJ7_STAEP.gb Staphylococcus_Rosenbach_1884 225074939 Submitted_(08-JAN-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACHE01000062 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1386 NA genomic_DNA NA BCM-HMP0060 NA Staphylococcus_epidermidis_albus NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 525374 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Direct_Submission NA ACHE01000062.1 ATGAAAATAAGGGATGAAAATATGGATTTCGTTAAATCAAAAACTGACTTATTTAGACTCATAGACAATGAAGCTCAAACATCGACATCTAAGATGGTTTTATTCTTAATATTAGGAACTATATTTTTAGATGCATATGATATTACTATTTTAGGTACAATGACTGATCAACTCACTCAACAGTTTCACTTATCACCAGCAACGCTATCTATAGTAATGACCTCTTTACCTATTGGTGCATTATTTGGTGCATTACTTGGTGGTACATTAGCACATCAGTTTGGACGCAAGCGTATTTTATCAATTGCCTTACTAACACTTACTGTAACCTCTCTTGGTGCGGCACTCGCACCAAATGTAATTATTCTAATAATATGTCGTTGTATAATGGGGTTTGCTATTGGAATGGATAGTCCAGTTGCTTTCACTTTTATTGCGGAAATAAGTAATTTAAAGCACAAAGGAAGAAATGTTAACTATTGGCAAGTCGTTTGGTATGTTGCAATAGTTACTTCTGCTTTAGTGGTCACTGCGTTCTTTATGCTAGGGGCTGGTGCACATTTGTGGAGATATGCAGTTGGATTTGGTGCACTTATTGCTTTTGTCTTGTACATCTTGCGAATTAAATATTTACACGAAAGTCCGACATGGGTGATTAATCATTATTCTTTAGAAAAAGCAACTGAATTTATAAGAAAATATTATCATAAAGACATCCACCTAGAGGGAACGCTTGAAGATGATTTAAATTCTGATGTGACTTCGCCACATAATTCTTGGACAGACTTATTTAAACCGAGATATATAAAAAGAATTATCCTGGCGACTGCGATTTCAACATTACAAGGTATGCAGTACTATGGTGTCGGTTTATACATACCTATTATTGCAACTTATCTTATTAGTAAGGATAAAATAGGTGTATTATTAGGTACTGCTATAGTCAATATAGCAGGTATTCTAGGCGCATATTTAGGTGCTCAATTGACTTATAAATTAGGTACACGCAAGCTTACAATGATAGGCTTCACACTTGTATTACTTTCAATGGTATGTGTAGGACTCTTTTATCATCATCTACCAATGCTTCTTAACACTTTCCTTATTGGATTATTTTTATTTGGCCATTCAGGAGGTCCTGGTACTCAAGGAAAAACAATTGGTGCCTTATCATTTCCGACTCATTTACGTTCACAAGCTACTGGCTTTGTAGAATCTGTAAGTCGTACTGGTAGTATCATAGGTACTTTTGTCTTTCCAATCATTCTTGCTACAGTAGGTCTAACGAATACTATGTTAATCTTGTCTATTGTCCCTTTACTCGGAATTATCATAACAGTATCTATAAAATGGGAAGCTGTCGGTAAGCATATTGAAGTAGAATAA > 1097 HMPREF0793_1076 Pfam:_PF07690;_InterPro:_IPR011701 major_facilitator_family_transporter EES41290.1 11 MEIVKSKNDLFRIIDHADQKHTSKILLFMILGTIFLDAYDITILGTMTDQLTKQFHLSPTMLSVVMTSLPIGALFGAILGGSLAHKFGRKRILSVSLLILVITSLGASLAPNLFILLTCRFIMGFAIGMDSPVAFTFIAEISNKWQKGRNVNYWQVVWYVAIVVSALVVIAFFVMGTGEHLWRFAVGFGAFIALVLYILRIKYLKESPTWIINHHTLKEATEYVRNNYDVNLKLEGNGTSFSENKSSKPSTTELFKPKYLKRIVLATSISTLQGMQYYGVGLYIPIIATYIISKDKLGVLLGTAIVNIAGIIGAYVGSQLTYKVGTRRLTMIGFSLVLIAMVMTGVFYHSLPMIINTFFIALFLFGHSGGPGTQGKTIAALSFPTYLRSQATGFVESVSRTGSIIGTFVFPIILAAVGLTNTMLILAIVPLVGLIITTALRWEAVGKNVEDE Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_epidermidis_M23864:W1 Staphylococcus_epidermidis_M23864:W1 ACJB01000032 53342..54700 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1359 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_Dr._Sheldon_Kaplan(contact_information:_Texas_Childrens_Hospital,_Department_ofPediatric_Infectious_Diseases,_1102_Bates_Street_#1150,_Houston,TX,_77030;_email:_slkaplan@TexasChildrensHospital.org)._Thegenomic_DNA_was_prepared_from_a_single_bacterial_isolate._Thesequence_generated_included_at_least_10_fold_coverage_of_Roche/454Lifesciences_FLX_fragment_data,_at_least_8_fold_clone_coverage_ofRoche/454_Lifesciences_paired-end_data_and_at_least_10_foldcoverage_of_Illumina/Solexa_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_to_the_Illumina/Solexa_data_withmapping_tools_such_as_Mosaic_and_Crossmatch_and_these_data_wereused_for_error_correction_for_this_version_of_the_draft_assembly.This_draft_assembly_meets_the_HMP_draft_quality_standards_(morethan_90%_of_the_genome_is_included_in_contigs,_more_than_90%_of_acore_set_of_bacterial_genes_are_found_with_>_30%_identity_and_>_30%length;_more_than_90%_of_the_bases_in_the_assembly_have_more_than_5fold_sequence_coverage,_the_contig_N50_length_is_greater_than_5kb,the_scaffold_N50_length_is_greater_than_20kb,_and_there_is_lessthan_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_10xSequencing_Technology:_454;_ABI;_Solexa/IlluminaAnnotation_was_added_to_the_contigs_in_June_2009. NA 30-JUN-2009 Staphylococcus_epidermidis_M23864:W1_contig00033,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_epidermidis_C5QPC0_STAEP.gb Staphylococcus_Rosenbach_1884 224999775 Submitted_(08-JAN-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACJB01000032 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1359 NA genomic_DNA NA M23864:W1 NA Staphylococcus_epidermidis_albus NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 525378 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Direct_Submission NA ACJB01000032.1 CTATTCGTCTTCTACATTCTTACCAACAGCTTCCCATCTTAAAGCGGTCGTGATAATTAAACCAACGAGCGGTACGATAGCTAGAATTAACATAGTATTTGTTAAACCTACAGCTGCAAGTATGATTGGGAATACGAAAGTCCCGATTATACTACCCGTACGACTCACAGATTCTACGAAACCGGTAGCTTGCGAACGTAAATATGTAGGAAATGATAAAGCAGCAATCGTCTTACCTTGTGTACCCGGACCACCAGAGTGCCCGAATAAGAATAGAGCGATGAAGAACGTGTTAATGATCATTGGTAAGCTGTGATAGAACACGCCTGTCATGACCATTGCAATCAAGACGAGACTGAAACCAATCATGGTTAAGCGACGTGTGCCCACTTTGTAAGTGAGTTGCGATCCTACGTAAGCTCCGATAATACCTGCTATGTTAACGATGGCTGTTCCTAGTAAGACGCCTAATTTATCTTTACTTATAATGTAAGTTGCAATAATTGGTATGTATAATCCCACGCCATAGTATTGCATCCCTTGCAATGTTGAAATTGAAGTTGCTAAGACAATTCTTTTTAAATATTTAGGCTTAAATAGTTCAGTTGTTGATGGTTTTGAAGATTTATTTTCGGAAAATGAAGTTCCGTTACCCTCTAGCTTAAGATTTACATCATAATTATTTCTTACATATTCAGTAGCCTCTTTCAATGTATGATGATTAATGATCCATGTTGGACTCTCTTTCAAATATTTGATACGTAAAATGTAAAGCACGAGAGCAATGAATGCACCAAAGCCTACTGCAAATCTCCATAAATGTTCGCCTGTACCCATAACAAAGAATGCAATAACCACAAGTGCAGATACGACAATCGCTACGTACCAAACAACTTGCCAGTAGTTGACGTTACGGCCTTTCTGCCATTTATTACTGATTTCTGCGATAAAAGTGAAGGCAACAGGACTGTCCATACCGATAGCGAAGCCCATAATGAAGCGACATGTAAGTAAAATAAAGAGATTTGGAGCAAGTGATGCACCTAAAGAAGTAATCACAAGAATAAGTAAAGATACGGATAAAATACGTTTACGACCAAATTTATGTGCGAGGGAGCCACCGAGAATTGCACCAAAAAGTGCTCCGATAGGTAAAGAGGTCATGACAACTGAAAGCATTGTTGGAGACAAATGAAATTGTTTCGTGAGTTGATCGGTCATAGTTCCTAAAATTGTGATGTCATAAGCATCTAAAAAGATCGTTCCCAATATCATGAAAAGTAGAATTTTAGATGTGTGTTTCTGATCTGCATGATCAATAATTCTAAATAAATCATTTTTAGATTTTACGATTTCCAT > 1098 HMPREF0791_1804 Pfam:_PF07690;_InterPro:_IPR011701 transporter EES35539.1 11 MKIRDENMNFVKSKTDLFRLIDDEAQTSTSKVVLFLILGTIFLDAYDITILGTMTDQLTQQFHLSPATLSIVMTSLPIGALFGALLGGTLAYQFGRKRILSIALLTLTVTSLGAAFAPNVIILIICRCVMGFAIGMDSPVAFTFIAEISNLKHKGRNVNYWQVVWYVAIVTSALVVIAFFMLGAGAHLWRYAVGFGAFIAFVLYILRIKYLHESPTWAINHYSLEKATEFIRKYYHKDIHLEGTLDDDLSSDVTSPQNSWTDLFKPRYIKRIILATAISTLQGMQYYGVGLYIPIIATYLISKEKIGVLLGTAIVNIAGILGAYLGAQLTYKLGTRKLTMIGFTLVLISMVCVGLFYHHLPMLLNTFLIGLFLFGHSGGPGTQGKTIGALSFPTHLRSQATGFVESVSRTGSIIGTFVFPIILAAVGLTNTMLILSIVPLLGIIITVSIKWEAVGKHIEVE Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_epidermidis_W23144 Staphylococcus_epidermidis_W23144 ACJC01000133 55354..56739 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1386 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_Dr._Sheldon_Kaplan(contact_information:_Texas_Childrens_Hospital,_Department_ofPediatric_Infectious_Diseases,_1102_Bates_Street_#1150,_Houston,TX,_77030;_email:_slkaplan@TexasChildrensHospital.org)._Thegenomic_DNA_was_prepared_from_a_single_bacterial_isolate._Thesequence_generated_included_at_least_10_fold_coverage_of_Roche/454Lifesciences_FLX_fragment_data,_at_least_8_fold_clone_coverage_ofRoche/454_Lifesciences_paired-end_data_and_at_least_10_foldcoverage_of_Illumina/Solexa_data._The_Roche/454_Lifesciences_sequence_was_assembled_using_theRoche/454_Lifescience_Newbler_assembler._The_contigs_from_theNewbler_assembly_were_aligned_to_the_Illumina/Solexa_data_withmapping_tools_such_as_Mosaic_and_Crossmatch_and_these_data_wereused_for_error_correction_for_this_version_of_the_draft_assembly.This_draft_assembly_meets_the_HMP_draft_quality_standards_(morethan_90%_of_the_genome_is_included_in_contigs,_more_than_90%_of_acore_set_of_bacterial_genes_are_found_with_>_30%_identity_and_>_30%length;_more_than_90%_of_the_bases_in_the_assembly_have_more_than_5fold_sequence_coverage,_the_contig_N50_length_is_greater_than_5kb,the_scaffold_N50_length_is_greater_than_20kb,_and_there_is_lessthan_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_35xSequencing_Technology:_454;_ABI;_Solexa/IlluminaAnnotation_was_added_to_the_contigs_in_June_2009. NA 26-JUN-2009 Staphylococcus_epidermidis_W23144_contig00174,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_epidermidis_C5QYR1_STAEP.gb Staphylococcus_Rosenbach_1884 224999867 Submitted_(09-JAN-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ACJC01000133 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1386 NA genomic_DNA NA W23144 NA Staphylococcus_epidermidis_albus NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 525376 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Direct_Submission NA ACJC01000133.1 TTACTCTACTTCAATATGTTTACCGACAGCTTCCCATTTTATAGATACTGTTATGATAATTCCAAGTAAAGGGACAATGGACAAGATTAACATAGTATTCGTTAGACCTACCGCAGCAAGTATGATTGGAAAGACAAAAGTGCCTATGATACTACCAGTACGACTTACAGATTCTACAAAGCCAGTAGCTTGTGAACGTAAATGAGTGGGGAATGATAAGGCGCCAATTGTTTTCCCTTGAGTACCAGGACCTCCTGAATGGCCAAATAAAAATAATCCAATAAGGAAAGTGTTAAGAAGCATTGGTAGATGATGATAAAAGAGTCCTACACATACCATTGAAATTAAAACAAGTGTGAATCCTATCATTGTAAGCTTCCGTGTACCTAATTTATAAGTCAATTGAGCACCTAAATATGCGCCTAGAATACCTGCTATATTGACTATGGCAGTGCCTAATAATACACCTATTTTTTCTTTACTAATAAGATAAGTTGCAATAATAGGTATGTATAAACCAACACCATAGTACTGCATACCTTGTAACGTTGAAATTGCGGTTGCCAGGATAATTCTTTTTATATATCTCGGTTTAAATAAGTCTGTCCAAGAATTTTGAGGCGAAGTCACATCAGAACTTAAATCATCGTCAAGCGTTCCCTCTAGGTGGATGTCTTTATGATAATATTTTCTTATAAATTCAGTTGCTTTTTCTAAAGAATAATGATTAATCGCCCATGTCGGACTTTCGTGTAAATATTTAATTCGCAAGATGTACAAGACAAAAGCAATAAATGCACCAAATCCAACTGCATATCTCCACAAATGTGCACCAGCCCCTAGCATAAAGAACGCAATGACCACTAAAGCAGAAGTAACTATTGCAACATACCAAACGACTTGCCAATAATTAACATTTCTTCCTTTATGCTTTAAATTACTTATTTCCGCAATAAAAGTGAAAGCAACTGGACTATCCATTCCAATAGCAAACCCCATTACACAACGACATATTATTAGAATAATTACATTTGGTGCGAATGCTGCACCAAGAGACGTTACAGTGAGTGTTAGTAAGGCAATTGATAAAATGCGCTTGCGTCCAAACTGATATGCTAATGTACCACCAAGTAATGCACCAAATAATGCACCAATAGGTAAAGAGGTCATTACTATAGATAGCGTTGCTGGTGATAAATGAAACTGTTGAGTGAGTTGATCAGTCATTGTACCTAAAATAGTAATATCATATGCATCTAAAAATATAGTTCCTAATATTAAGAATAAAACCACCTTAGATGTCGATGTTTGAGCTTCATCGTCTATGAGTCTAAATAAGTCAGTTTTTGATTTAACGAAATTCATATTTTCATCCCTTATTTTCAT > 1099 HMPREF0794_1378 COG:_COG0477;_Pfam:_PF00083;_InterPro:_IPR003663 major_facilitator_superfamily_transporter_protein EFE58772.1 11 MLKRFHKGIIISLAIEKGMIRMKANKYLIFILGALGGLLYGYDNGVISGALLFIHKDIPLNSTTEGIVVSSMLIGAIVGAGSSGPLADKLGRRRLVMLIAIVFIIGALILAASTNLALLIIGRLIIGLAVGGSMSTVPVYLSEMAPTEYRGSLGSLNQLMITIGILAAYLVNYAFADIEGWRWMLGLAVVPSVILLVGIYFMPESPRWLLENRNEEAARQVMKITYDDSEIDKELKEMKEINAISESTWTVIKSPWLGRILIVGCIFAIFQQFIGINAVIFYSSSIFAKAGLGEAASILGSVGIGTINVLVTIVAIFVVDKIDRKKLLVGGNIGMIASLLIMAILIWTIGIASSAWIIIVCLSLFIVFFGISWGPVLWVMLPELFPMRARGAATGISALVLNIGTLIVSLFFPILSDALSTEWVFLIFAFIGVLAMIFVIKFLPETRGRSLEEIEYELRERTGARTE Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_epidermidis_M23864:W2(grey) Staphylococcus_epidermidis_M23864:W2(grey) ADMU01000032 11606..13009 Qin,X.,_Bachman,B.,_Battles,P.,_Bell,A.,_Bess,C.,_Bickham,C.,_Chaboub,L.,_Chen,D.,_Coyle,M.,_Deiros,D.R.,_Dinh,H.,_Forbes,L.,_Fowler,G.,_Francisco,L.,_Fu,Q.,_Gubbala,S.,_Hale,W.,_Han,Y.,_Hemphill,L.,_Highlander,S.K.,_Hirani,K.,_Hogues,M.,_Jackson,L.,_Jakkamsetti,A.,_Javaid,M.,_Jiang,H.,_Korchina,V.,_Kovar,C.,_Lara,F.,_Lee,S.,_Mata,R.,_Mathew,T.,_Moen,C.,_Morales,K.,_Munidasa,M.,_Nazareth,L.,_Ngo,R.,_Nguyen,L.,_Okwuonu,G.,_Ongeri,F.,_Patil,S.,_Petrosino,J.,_Pham,C.,_Pham,P.,_Pu,L.-L.,_Puazo,M.,_Raj,R.,_Reid,J.,_Rouhana,J.,_Saada,N.,_Shang,Y.,_Simmons,D.,_Thornton,R.,_Warren,J.,_Weissenberger,G.,_Zhang,J.,_Zhang,L.,_Zhou,C.,_Zhu,D.,_Muzny,D.,_Worley,K._and_Gibbs,R. NA 0:1404 This_sequence_is_generated_as_a_part_of_the_Human_MicrobiomeProject_(HMP),_funded_by_the_National_Institutes_of_Health_(NIH),National_Human_Genome_Research_Institute_(NHGRI)_Large-ScaleSequencing_Research_Network_and_the_National_Institute_of_Allergyand_Infectious_Diseases_(NIAID)_Microbial_Genome_Sequencing_CentersProgram._The_mission_of_the_HMP_is_to_generate_resources_to_enablethe_characterization_of_the_human_microbiota,_the_microbialcommunities_living_within_human_bodies,_and_analyze_the_role_ofthese_organisms_in_human_health_and_disease._Seehttp://www.hmpdacc.org/_for_more_information._The_sequenced_strain_was_obtained_from_Dr._Sheldon_Kaplan(contact_information:_Texas_Childrens_Hospital,_Department_ofPediatric_Infectious_Diseases,_1102_Bates_St._#1150,_Houston,_TX,77030)._The_genomic_DNA_was_prepared_from_a_single_bacterialisolate._The_sequence_generated_included_at_least_10_fold_coverageof_Roche/454_Lifesciences_FLX_fragment_data_and_at_least_8_foldclone_coverage_of_Roche/454_Lifesciences_paired-end_data._TheRoche/454_Lifesciences_sequence_was_assembled_using_the_Roche/454Lifescience_Newbler_assembler._The_contigs_from_the_Newblerassembly_were_aligned_with_mapping_tools_such_as_Mosaic_andCrossmatch_and_these_data_were_used_for_error_correction_for_thisversion_of_the_draft_assembly._This_draft_assembly_meets_the_HMPdraft_quality_standards_(more_than_90%_of_the_genome_is_included_incontigs,_more_than_90%_of_a_core_set_of_bacterial_genes_are_foundwith_>_30%_identity_and_>_30%_length;_more_than_90%_of_the_bases_inthe_assembly_have_more_than_5_fold_sequence_coverage,_the_contigN50_length_is_greater_than_5kb,_the_scaffold_N50_length_is_greaterthan_20kb,_and_there_is_less_than_1_gap_per_5kb)._This_is_a_reference_genome_for_the_Human_Microbiome_Project.This_project_is_co-owned_with_the_Human_Microbiome_Project_DACC.Genome_Coverage:_11xSequencing_Technology:_454;_ABI. NA 22-MAR-2010 Staphylococcus_epidermidis_M23864:W2(grey)_contig00033,_whole_genome_shotgun_sequence. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_epidermidis_D4FLE0_STAEP.gb Staphylococcus_Rosenbach_1884 291318373 Submitted_(18-NOV-2009)_Human_Genome_Sequencing_Center,_Baylor_College_of_Medicine,_One_Baylor_Plaza,_Houston,_TX_77030,_USA NA ADMU01000032 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ NA 1404 NA genomic_DNA NA M23864:W2(grey) NA Staphylococcus_epidermidis_albus NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 525375 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Direct_Submission NA ADMU01000032.1 TTATTCAGTTCTTGCTCCTGTACGTTCACGTAATTCATATTCTATTTCTTCTAAACTACGTCCGCGTGTTTCTGGTAAGAATTTAATTACGAAAATCATCGCTAAAACACCTATGAATGCAAAGATTAAAAATACCCATTCTGTACTTAATGCATCACTTAATATTGGGAAGAACAATGACACGATAAGCGTTCCGATATTTAGCACAAGCGCTGAAATGCCCGTAGCAGCGCCACGTGCGCGCATCGGGAATAATTCAGGTAGCATAACCCATAGAACAGGTCCCCAAGAAATCCCAAAGAATACAATAAATAATGATAAACAAACAATAATAATCCACGCTGATGAAGCAATTCCAATTGTCCAAATTAAGATTGCCATAATTAATAATGAGGCAATCATACCAATATTACCACCAACAAGTAGTTTTTTACGATCAATCTTATCTACTACAAAAATGGCAACTATTGTTACAAGAACATTAATAGTTCCTATACCAACTGAACCTAATATAGACGCCGCTTCACCCAGTCCAGCCTTAGCAAAGATTGAAGATGAATAGAAAATGACTGCATTGATACCAATAAATTGCTGGAAAATAGCAAATATACAACCTACAATTAATATTCTACCTAACCATGGTGATTTAATGACTGTCCATGTAGATTCAGAGATAGCGTTAATTTCTTTCATCTCTTTAAGTTCTTTATCAATTTCGCTATCGTCATAAGTAATCTTCATCACTTGACGAGCGGCTTCTTCGTTTCTATTTTCAAGTAACCATCTTGGACTCTCAGGCATAAAATAAATACCCACAAGTAAAATAACCGATGGAACAACTGCTAATCCTAGCATCCAACGCCAACCCTCAATATCCGCAAATGCATAGTTGACTAAATATGCTGCTAAAATACCAATTGTAATCATTAGTTGATTAAGTGAACCTAGTGAGCCACGATATTCTGTCGGTGCCATTTCACTTAAATAAACAGGTACCGTAGACATCGAACCACCCACTGCTAAACCAATAATTAAACGTCCAATAATTAATAATGCTAAATTGGTTGATGCAGCAAGAATCAGTGCCCCAATAATAAATACAATAGCGATGAGCATTACTAGACGTCGACGACCTAATTTATCAGCAAGTGGCCCACTGCTTCCCGCACCGACTATTGCGCCAATTAACATTGAAGACACAACGATACCCTCAGTTGTACTATTGAGAGGTATGTCTTTATGTATAAATAATAAAGCACCGGAAATCACACCATTATCATAACCATATAATAAGCCACCAAGTGCTCCCAAAATAAAGATTAAATACTTATTTGCTTTCATTCGTATCATTCCTTTTTCTATAGCTAGACTAATTATAATGCCTTTATGAAAGCGTTTCAACAT > 1100 NA NA major_facilitator_family_transporter_homologue BAJ15051.1 11 MASETITIHTKQDIIDYVNERKTTKRTSLLLIIVLGTIFLDAYDLTILGTATDQLTQEFKLSPTYLSFIMTAMPFGALFGAAIGGFYADKLGRKLILSVSLISLIIGAIGAALSPAPAILLCFRLLMGFAIGMDSPVAFTFIAEISNKKDKGRNVNYWQVVWYIAVVSSALIVILLYSLGTGAWLWRYSVALGAVFATIILVLRLFYLSESPSWSMKNKTLTEASKELEKNYNINVNIEPNKGEDESFSKTEVKNPLRTLFNKRYRKRTILATSIATLQGMQYYAIGLYIPLIAIYIIGENKIESLSGTAIINIAGIIGGLTGALLTTKYGARKLTIAGFSIVGTAMIIIGLFYGHTYTWLIALMVAFFLFGHSGGPGTQGKAIAALSYPTILRGKGTGFVESVSRFGSMFGTFIFPIILANLGLNKTMLLLALVPIVGLIITTYIKWEPVGKDVEHEDQYIEKV Bacillus/Lactobacillus/Streptococcus_group Staphylococcus_sciuri_subsp._sciuri Staphylococcus_sciuri_subsp._sciuri AB547234 5423..6820 Tsubakishita,S.,_Kuwahara-Arai,K.,_Sasaki,T._and_Hiramatsu,K. NA 0:1398 NA NA 21-OCT-2010 Staphylococcus_sciuri_subsp._sciuri_DNA,_methicillin-resistance_gene_region,_strain:_ATCC_29062. NA Staphylococcus_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Staphylococcus_sciuri_E0D4W7_STASC.gb Staphylococcus_Rosenbach_1884 304268616 Antimicrob._Agents_Chemother._54_(10),_4352-4359_(2010) NA AB547234 NA NA Bacillus/Staphylococcus_group low_GC_Gram+ 20679504 1398 NA genomic_DNA 147467 ATCC_29062 NA Staphylococcus_sciuri_Kloos_et_al._1976 NA complement NA NA NA NA NA NA Staphylococcus_sciuri_subsp._sciuri_Kloos_et_al._1976_(Approved_Lists_1980)_emend._Kloos_et_al._1997 NA NA NA prokaryotes NA 147467 Bacteria,_Firmicutes,_Bacillales,_Staphylococcus Origin_and_molecular_evolution_of_the_determinant_of_methicillin_resistance_in_staphylococci NA AB547234.1 TTAAACTTTTTCAATATATTGATCTTCGTGTTCGACATCTTTACCGACTGGTTCCCATTTAATATAAGTAGTAATGATTAGCCCAACTATAGGCACTAATGCTAATAGCAGCATTGTCTTATTTAATCCTAAGTTAGCTAATATAATTGGAAAAATAAATGTACCAAACATACTACCGAATCTACTCACGGATTCTACAAAGCCTGTTCCTTTACCTCGTAGAATTGTAGGGTATGAAAGGGCGGCAATTGCTTTACCTTGAGTTCCTGGTCCACCTGAATGTCCAAATAGGAAGAATGCCACCATTAACGCAATCAACCAAGTATAGGTATGTCCATAAAATAAACCTATAATAATCATGGCTGTCCCTACAATGCTAAACCCAGCAATTGTTAATTTACGTGCGCCGTATTTTGTTGTGAGTAATGCACCAGTTAAACCACCAATGATACCCGCGATATTAATGATTGCAGTACCTGATAAGGATTCGATTTTGTTTTCTCCGATTATATAAATTGCGATTAAAGGAATATATAGACCGATTGCATAGTACTGCATACCTTGTAATGTTGCAATGGAAGTCGCTAATATTGTTCTTTTACGATAGCGTTTATTAAACAATGTACGTAAAGGATTTTTAACTTCTGTTTTACTAAATGATTCATCTTCACCTTTATTAGGTTCGATATTCACATTGATGTTGTAGTTCTTCTCGAGTTCTTTACTCGCTTCTGTTAAGGTTTTATTTTTCATTGACCATGATGGGCTTTCGCTTAAATAAAATAATCTTAAAACGAGTATAATCGTTGCGAACACTGCGCCGAGTGCTACGGAATAACGCCATAACCAAGCACCGGTACCAAGAGAATATAACAAAATAACGATAAGAGCCGAAGATACAACGGCGATATACCAAACGACTTGCCAATAGTTTACGTTACGGCCTTTATCTTTTTTATTACTGATTTCTGCTATAAAAGTAAAAGCAACTGGGCTATCCATACCAATTGCAAATCCCATCAATAATCTGAAACATAATAAAATAGCTGGTGCAGGTGATAACGCAGCCCCAATTGCCCCAATGATTAAAGAAATCAATGAGACAGATAGAATTAATTTACGACCTAATTTATCGGCGTAAAATCCACCAATTGCAGCACCAAATAATGCACCGAATGGCATTGCTGTCATAATGAATGATAAGTAAGTCGGAGAAAGTTTGAATTCTTGAGTAAGTTGATCAGTCGCTGTACCTAAAATTGTTAAATCATAAGCATCTAAAAATATTGTGCCTAATACGATAATTAATAATAGTGACGTACGCTTTGTCGTCTTACGTTCGTTCACATAATCGATAATATCCTGTTTCGTATGTATTGTAATTGTTTCACTAGCCAT > 1101 Smlt4439 similarity:fasta;_BF4182;_bfragilisNCTC9343;_putative_transmembrane_sugar_transporter;_length_439_aa;_id=30.8%;_E()=4.4e-14;_354_aa_overlap;_query_15-365_aa;_subject_11-331_aa putative_major_facilitator_superfamily_putative_transmembrane_transporter YP_001974091.1 11 MPMTARTAPRWPVRYLLFIGGLGGLLYGIDIGIIAGALPYLEATASHAWQLSSQQLGFVVAAVLLGSVLSSLFAGMVADLIGRRGAMLLAGLLFTASIPIMALASGYTPLLLGRLLQGISGGLIGVVIPLYLAEVLSPERRGRGAAMFQLLLTVGLVLAALIGLYHAHAVDAAAEAVRSLPVAQQAQELFTVKDHAWRTIFWTCLAPGLLFCAGIFWLSESPRWLVRRGRIDEARRSLQRVLPAADVEPTLAQIQAPESSSSDGKRDPLLSRRYVVPFLLACVVLACTQATGINSVLAYAVNILNQAGLSGSVANGADVAIKLLNAVMTVVALLLVDRKGRKFLLMLGSGGICVALLAAAALFFQAERGRADVQPQLQAAVSGDGLQLVLDDAQWQRLSNGIDSQGRPMQLTVSYAYGDFTNVRALRSDNLTDRELRIERAGTVQPDSVIGAFFRKLHLNPFADPASAAQAPLRIEQARIGPVPPPAHGWAVAACILVFVAFFAVGPGVCVWLALSELMPNRIRSNGMSIALLINQFVSTTIAAIFLPTVGHYGYASMFVFWAACTFVFFLVAAFWLPETKGKSLEEIEARFAGKRG gamma_subgroup Stenotrophomonas_maltophilia_K279a Stenotrophomonas_maltophilia_K279a NC_010943 4552750..4554543 Crossman,L.C.,_Gould,V.C.,_Dow,J.M.,_Vernikos,G.S.,_Okazaki,A.,_Sebaihia,M.,_Saunders,D.,_Arrowsmith,C.,_Carver,T.,_Peters,N.,_Adlem,E.,_Kerhornou,A.,_Lord,A.,_Murphy,L.,_Seeger,K.,_Squares,R.,_Rutter,S.,_Quail,M.A.,_Rajandream,M.A.,_Harris,D.,_Churcher,C.,_Bentley,S.D.,_Parkhill,J.,_Thomson,N.R._and_Avison,M.B. NA 0:1794 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AM743169.COMPLETENESS:_full_length. NA 30-JAN-2012 Stenotrophomonas_maltophilia_K279a_chromosome,_complete_genome. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Stenotrophomonas_maltophilia_B2FLL2_STRMK.gb Stenotrophomonas_Palleroni_and_Bradbury_1993 190572091 Genome_Biol._9_(4),_R74_(2008) NA NC_010943 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives 18419807 1794 NA genomic_DNA NA K279a NA Xanthomonas_maltophilia_(Hugh_1981)_Swings_et_al._1983_emend._van_den_Mooter_and_Swings_1990 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 522373 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Stenotrophomonas,_Stenotrophomonas_maltophilia_group The_complete_genome,_comparative_and_functional_analysis_of_Stenotrophomonas_maltophilia_reveals_an_organism_heavily_shielded_by_drug_resistance_determinants NA NC_010943.1 ATGCCGATGACTGCACGCACCGCTCCGCGCTGGCCCGTACGCTACCTGCTCTTCATCGGCGGCCTGGGTGGCCTGCTGTACGGCATCGACATCGGCATCATCGCCGGCGCCCTGCCCTATCTCGAAGCAACTGCCAGCCACGCCTGGCAGCTCAGCAGCCAGCAGCTCGGCTTCGTGGTGGCAGCGGTGCTGCTGGGCAGCGTGCTGTCCTCGCTGTTCGCCGGCATGGTTGCCGACCTGATCGGCCGCCGCGGCGCGATGCTGCTGGCCGGCCTGCTGTTCACTGCCTCGATTCCGATCATGGCACTGGCCTCCGGCTACACGCCGCTGCTGCTGGGACGCCTGCTGCAGGGCATCAGTGGCGGTTTGATCGGCGTAGTGATTCCACTGTACCTGGCCGAAGTGCTCAGCCCCGAGCGACGTGGGCGCGGTGCGGCGATGTTCCAGCTGCTGCTGACCGTTGGCCTGGTGCTGGCAGCCCTGATCGGCCTGTACCACGCTCACGCCGTGGATGCCGCCGCCGAAGCCGTGCGTTCGCTGCCGGTCGCGCAGCAGGCGCAGGAACTGTTCACGGTGAAGGACCACGCCTGGCGCACCATCTTCTGGACCTGCCTGGCGCCAGGCCTGCTGTTCTGCGCCGGCATCTTCTGGCTGTCCGAATCGCCACGCTGGCTGGTACGCCGCGGCCGCATCGATGAAGCCCGCCGCAGCCTCCAGCGCGTCCTGCCCGCCGCAGATGTCGAGCCCACGCTGGCCCAGATCCAGGCGCCGGAATCGAGCAGCAGCGACGGCAAGCGCGATCCACTGCTCAGCCGCCGCTACGTGGTGCCGTTCCTGCTCGCCTGCGTGGTGCTGGCCTGCACCCAGGCTACCGGCATCAATTCGGTGCTGGCCTACGCGGTCAACATCCTCAACCAGGCCGGCCTGTCCGGTTCAGTGGCCAACGGCGCCGACGTGGCGATCAAGCTGCTCAATGCGGTGATGACCGTGGTCGCGTTGCTGCTGGTCGACCGCAAGGGCCGCAAGTTCCTGCTGATGCTCGGCAGTGGTGGCATCTGCGTGGCCCTGCTGGCCGCGGCCGCGCTGTTCTTCCAGGCCGAGCGTGGCCGCGCCGATGTGCAACCGCAGCTGCAGGCGGCGGTCAGCGGCGATGGCCTGCAACTGGTTCTGGATGACGCGCAGTGGCAGCGCCTGAGCAATGGCATCGACAGCCAGGGCCGACCGATGCAGCTGACCGTGTCGTACGCGTATGGTGACTTTACCAATGTGCGCGCCCTGCGCAGCGACAACCTGACCGATCGCGAGCTGCGCATCGAGCGCGCCGGCACCGTGCAGCCCGACAGTGTGATTGGTGCGTTCTTCCGCAAGCTGCATCTGAACCCGTTCGCCGACCCGGCCAGTGCCGCGCAGGCGCCGCTGCGCATCGAACAGGCGCGCATCGGCCCGGTGCCGCCACCGGCACACGGCTGGGCCGTGGCCGCCTGCATCCTGGTGTTCGTCGCGTTCTTCGCGGTCGGCCCCGGCGTGTGCGTGTGGCTGGCACTGTCGGAGCTGATGCCGAACCGCATCCGCTCCAACGGCATGAGCATCGCACTGCTGATCAACCAGTTCGTGTCGACCACCATCGCCGCCATCTTCCTGCCCACGGTGGGCCACTACGGCTACGCCAGCATGTTCGTGTTCTGGGCGGCCTGCACCTTCGTGTTCTTCCTGGTAGCCGCGTTCTGGCTGCCGGAGACCAAGGGCAAGTCACTGGAGGAGATCGAGGCACGGTTCGCGGGAAAGCGGGGCTGA > 1102 SSKA14_41 GEPR_COG0477_Permeases_of_the_major_facilitator_superfamily metabolite_transport_protein EED37035.1 11 MLPMSTTRAAAPPENSPRRVLLASLIGTTIEFFDFYIYATAAVLVFPHLFFPDSSEQAALLQSLATFAVAFIARPVGSAVFGHFGDRIGRKATLVAALLTMGLSTVLIGLLPTHAQIGLWAPALLALCRFGQGLGLGGEWGGAVLLATENAPPGKRAWYGMFPQLGAPLGFLLSAGIFLVLGRCLSQDDFLQWGWRIPFVASALLVGLGLWVRLNIHETPDFKKALERKAPVRLPMLTVLRDHPVPMLLGTLGAFATFVLFYLMTVFSLGHGTAVLGYSREQFLLMQMAGMLFFALGIPLSARYGDRWGTRRTMIVASVLIVGFGVLFAPLFQPHSPWLVTGFLCLGLFLMGLTYGPCGTFLAEIYPVEVRYTGASLSFNLAGILGAAPAPYLATWLAEHFGLVAVGYYLCLTAVATLCALVALHRRALRLSQRSA gamma_subgroup Stenotrophomonas_sp._SKA14 Stenotrophomonas_sp._SKA14 DS999412 3753312..3754622 Hagstrom,A.,_Ferriera,S.,_Johnson,J.,_Kravitz,S.,_Beeson,K.,_Sutton,G.,_Rogers,Y.-H.,_Friedman,R.,_Frazier,M._and_Venter,J.C. NA 0:1311 With_funding_from_the_Gordon_and_Betty_Moore_Foundation(www.moore.org),_the_J._Craig_Venter_Institute_(www.jcvi.org)_issequencing,_assembling,_and_auto-annotating_the_genomes_ofapproximately_165_marine_microbes._These_microbes_were_contributedby_collaborators_worldwide,_and_embody_an_array_of_physiologicaldiversity,_including_carbon_fixers,_photoautotrophs,photoheterotrophs,_nitrifiers,_and_methanotrophs._This_work_wasdesigned_to_complement_other_ongoing_research_at_JCVI_and_elsewhereto_characterize_the_microbial_biodiversity_of_marine_andterrestrial_environments_through_metagenomics_profiling_ofenvironmental_samples.Please_be_aware_that_the_annotation_is_done_automatically_withlittle_or_no_manual_curation. NA 07-JAN-2009 Stenotrophomonas_sp._SKA14_scf_1108481805244_genomic_scaffold,_whole_genome_shotgun_sequence. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Stenotrophomonas_sp_B8L2X5_9GAMM.gb Stenotrophomonas_Palleroni_and_Bradbury_1993 219718471 Submitted_(22-DEC-2008)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA DS999412 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives NA 1311 NA genomic_DNA NA SKA14 NA Stenotrophomonas_sp._SKA14 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 391601 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Stenotrophomonas Direct_Submission NA DS999412.1 TCAAGCGCTTCTTTGGCTGAGCCGCAGTGCGCGCCGGTGCAGCGCCACCAGCGCACACAGGGTCGCCACCGCAGTCAGGCACAGGTAGTAACCCACCGCGACCAGGCCGAAGTGTTCGGCCAACCACGTGGCCAGGTACGGTGCCGGGGCCGCCCCCAGAATGCCGGCCAGGTTGAAGGACAGCGATGCCCCGGTATAGCGCACCTCCACCGGGTAGATCTCGGCCAGGAAGGTGCCGCACGGCCCGTAGGTCAGGCCCATCAGGAACAGGCCCAGGCACAGGAAGCCGGTGACCAGCCACGGGCTGTGCGGCTGGAACAGCGGTGCGAACAGCACGCCGAATCCGACGATCAGCACGCTGGCCACGATCATCGTGCGGCGCGTGCCCCAGCGGTCGCCATAGCGTGCCGACAGCGGGATGCCCAGTGCGAAGAACAACATGCCGGCCATCTGCATCAGCAGGAACTGTTCGCGGCTGTAGCCCAGCACCGCGGTGCCATGGCCGAGGCTGAACACCGTCATCAGGTAGAACAGCACGAAGGTGGCGAACGCCCCCAACGTGCCCAGCAGCATCGGCACCGGATGGTCCCGCAGCACCGTCAGCATCGGCAGCCGCACCGGCGCCTTGCGTTCCAGCGCCTTCTTGAAGTCGGGGGTCTCGTGGATGTTCAGGCGCACCCACAGGCCCAGCCCGACCAGCAGCGCGCTGGCCACGAACGGAATGCGCCAGCCCCATTGCAGGAAGTCGTCCTGGCTCAGGCAGCGGCCCAGCACCAGGAAGATGCCGGCCGACAGCAGGAAGCCCAGCGGAGCACCCAGCTGCGGGAACATGCCGTACCAGGCGCGCTTGCCCGGCGGCGCGTTCTCGGTGGCCAGCAGCACCGCCCCACCCCACTCGCCGCCCAGGCCCAGGCCCTGGCCGAAACGGCACAGCGCCAGCAGCGCCGGTGCCCACAACCCGATCTGCGCATGGGTCGGCAACAGGCCGATCAGCACCGTGGACAGGCCCATGGTCAGCAACGCGGCCACCAGAGTGGCCTTGCGGCCGATGCGGTCACCGAAGTGGCCGAACACCGCCGAGCCCACCGGCCGGGCGATGAACGCCACCGCGAAGGTCGCCAAGGACTGCAGCAGTGCTGCCTGTTCGCTGCTGTCCGGGAAGAACAGGTGCGGGAACACCAGCACCGCGGCCGTGGCGTAGATGTAGAAATCGAAGAACTCGATGGTGGTGCCGATCAGGCTGGCCAGCAGGACACGGCGGGGAGAATTCTCGGGCGGTGCGGCAGCGCGGGTCGTCGACATCGGCAACAC > 1103 SSKA14_2109 GEPR_COG0477_Permeases_of_the_major_facilitator_superfamily proline/betaine_transporter EED39093.1 11 MQDTPDSHAHFGWFKRRRHLKVDEITVVDKPMLKRAVGAAALGNAMEWFDFGVYGYLAVTIGQVFFPSSNPTAQVIAAFATFTVAFLVRPLGGLVFGPLGDRYGRQKVLAFTMILMALGTFAIGLIPSYERIGIWAPVLLLLARVVQGFSTGGEYGGAATFIAEYSTDRNRGLMGSWLEFGTLGGYIAGAGTVTALHMLLSSEQMLDWGWRIPFLVAGPLGLLGLYMRMKLEETPAFRAFAEEAEKREHDRPGLGALLQVHGRQLLVCMGLVLVFNVTDYMLLTYMPSYLSVTMGYAESKGLLLIIIVMLVMMPLNIVGGLFSDKLGRRPMIIGACIALLVLAVPCLLLVGSGNDWMIFLGLMLLGLALVCFTSSMPSTLPALFYTPVRYSALSIAFNVSVSLFGGTTPLVTAWLVERTGDPLVPAYYLMGAAVIGLVTMLFVKETAGLPLRGSPPAVGSDKEAAALLKSDVPVTVDPSLPPLPDVAEPEQVKPA gamma_subgroup Stenotrophomonas_sp._SKA14 Stenotrophomonas_sp._SKA14 DS999412 2707228..2708715 Hagstrom,A.,_Ferriera,S.,_Johnson,J.,_Kravitz,S.,_Beeson,K.,_Sutton,G.,_Rogers,Y.-H.,_Friedman,R.,_Frazier,M._and_Venter,J.C. NA 0:1488 With_funding_from_the_Gordon_and_Betty_Moore_Foundation(www.moore.org),_the_J._Craig_Venter_Institute_(www.jcvi.org)_issequencing,_assembling,_and_auto-annotating_the_genomes_ofapproximately_165_marine_microbes._These_microbes_were_contributedby_collaborators_worldwide,_and_embody_an_array_of_physiologicaldiversity,_including_carbon_fixers,_photoautotrophs,photoheterotrophs,_nitrifiers,_and_methanotrophs._This_work_wasdesigned_to_complement_other_ongoing_research_at_JCVI_and_elsewhereto_characterize_the_microbial_biodiversity_of_marine_andterrestrial_environments_through_metagenomics_profiling_ofenvironmental_samples.Please_be_aware_that_the_annotation_is_done_automatically_withlittle_or_no_manual_curation. NA 07-JAN-2009 Stenotrophomonas_sp._SKA14_scf_1108481805244_genomic_scaffold,_whole_genome_shotgun_sequence. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Stenotrophomonas_sp_B8L5X2_9GAMM.gb Stenotrophomonas_Palleroni_and_Bradbury_1993 219718471 Submitted_(22-DEC-2008)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA DS999412 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives NA 1488 NA genomic_DNA NA SKA14 NA Stenotrophomonas_sp._SKA14 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 391601 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Stenotrophomonas Direct_Submission NA DS999412.1 TCAGGCCGGCTTCACCTGCTCGGGCTCTGCAACGTCGGGCAACGGCGGCAAGCTCGGGTCCACCGTCACCGGCACGTCGCTCTTCAACAACGCGGCCGCTTCCTTGTCGCTGCCCACGGCCGGCGGTGAACCGCGCAGCGGCAGGCCGGCGGTTTCCTTCACGAACAGCATGGTCACCAGGCCGATCACCGCCGCGCCCATCAGGTAGTAGGCCGGCACCAGCGGATCGCCGGTACGCTCCACCAGCCACGCGGTCACCAGCGGCGTGGTGCCACCGAACAGCGACACCGACACGTTGAAGGCGATCGACAGCGCGCTGTAGCGCACCGGGGTATAGAACAGCGCCGGCAGCGTGGACGGCATCGAACTGGTGAAGCACACCAGGGCCAGGCCCAGCAGCATCAGGCCGAGGAAGATCATCCAGTCGTTGCCGCTGCCAACCAGCAGCAGGCACGGCACCGCCAGCACCAGCAGCGCGATGCACGCACCGATGATCATCGGGCGGCGGCCCAGCTTGTCACTGAACAATCCGCCGACGATGTTCAACGGCATCATCACCAGCATCACGATGATGATCAGCAGCAGGCCCTTGCTCTCGGCGTAGCCCATGGTGACGCTGAGGTAGCTGGGCATGTAGGTCAGCAGCATGTAGTCGGTGACGTTGAACACCAGCACCAGGCCCATGCACACCAGCAGCTGGCGGCCGTGCACCTGGAGCAGCGCGCCCAGCCCCGGCCGGTCATGTTCGCGCTTCTCCGCTTCCTCGGCGAAGGCGCGGAACGCCGGGGTTTCCTCAAGCTTCATGCGCATGTACAGGCCGAGCAGGCCCAGCGGGCCGGCCACCAGGAACGGAATGCGCCAGCCCCAGTCCAGCATCTGCTCGCTGCTCAACAGCATGTGCAGCGCGGTGACGGTGCCGGCACCGGCGATGTAGCCGCCCAGCGTGCCGAACTCCAGCCAGCTGCCCATCAGGCCGCGGTTGCGGTCGGTGGAGTACTCGGCGATGAAGGTGGCTGCCCCGCCATACTCGCCGCCGGTGGAAAAGCCCTGCACCACGCGCGCCAGCAGCAACAGCACCGGCGCCCAGATGCCGATGCGTTCGTAGGAGGGAATCAGGCCGATGGCAAAGGTACCCAGCGCCATCAGGATCATGGTGAATGCCAGCACTTTCTGGCGGCCGTAACGGTCGCCCAGCGGGCCGAACACTAGGCCGCCCAGCGGCCGCACCAGGAATGCCACGGTGAAGGTGGCGAAGGCGGCGATTACCTGTGCGGTGGGATTGCTTGAGGGGAAGAACACCTGACCGATGGTGACGGCCAGATAGCCGTATACACCGAAGTCGAACCACTCCATGGCATTGCCCAGCGCAGCGGCGCCGACGGCGCGCTTGAGCATGGGCTTGTCGACAACGGTGATCTCATCGACCTTCAGGTGGCGGCGGCGTTTGAACCAGCCGAAATGAGCATGTGAATCGGGGGTGTCCTGCAT > 1104 SSKA14_2052 GEPR_COG0477_Permeases_of_the_major_facilitator_superfamily sugar_transporter EED39036.1 11 MTASTAPRWPVRYLLFIGGLGGLLYGIDIGIIAGALPYLEATASHAWQLSSQQLGFVVAAVLLGSVLSSLFAGMVADLIGRRGAMLLAGLLFTASIPIMALASGYTPLLLGRLLQGISGGLIGVVIPLYLAEVLSPERRGRGAAMFQLLLTIGLVLAALIGLYHAHAVDAAAEAVRSMPVAQQAQELFTVKDHAWRTIFWTCLAPGLLFCAGIFWLSESPRWLVRRGRIDDARRSLQRVLPASEVEPTLAQIQAPESSSSSGKRDPLLSRRYVVPFLLACVVLACTQATGINSVLAYAVNILNQAGLSGSVANSADVAIKLLNAVMTVVALLLVDRKGRKFLLMLGSGGICVALLAAATLFFQAERGRTDVQAQLQAAVSGDGLQLVLDEAQWQRLGAGIDSEGRPLQLTVSYAYGDFTNVRALRSDNLTDRELRIERTGTVQPDSVIGAFFRKLHLNPFADPAKAAQAPLRIEQARIGPVPPPAHGWAVATCILVFVAFFAVGPGVCVWLALSELMPNRIRSNGMSIALLINQFVSTTIAAIFLPTVGHYGYASMFVFWAACTFVFFLVAALWLPETKGKSLEEIEARFAGKRG gamma_subgroup Stenotrophomonas_sp._SKA14 Stenotrophomonas_sp._SKA14 DS999412 705103..706890 Hagstrom,A.,_Ferriera,S.,_Johnson,J.,_Kravitz,S.,_Beeson,K.,_Sutton,G.,_Rogers,Y.-H.,_Friedman,R.,_Frazier,M._and_Venter,J.C. NA 0:1788 With_funding_from_the_Gordon_and_Betty_Moore_Foundation(www.moore.org),_the_J._Craig_Venter_Institute_(www.jcvi.org)_issequencing,_assembling,_and_auto-annotating_the_genomes_ofapproximately_165_marine_microbes._These_microbes_were_contributedby_collaborators_worldwide,_and_embody_an_array_of_physiologicaldiversity,_including_carbon_fixers,_photoautotrophs,photoheterotrophs,_nitrifiers,_and_methanotrophs._This_work_wasdesigned_to_complement_other_ongoing_research_at_JCVI_and_elsewhereto_characterize_the_microbial_biodiversity_of_marine_andterrestrial_environments_through_metagenomics_profiling_ofenvironmental_samples.Please_be_aware_that_the_annotation_is_done_automatically_withlittle_or_no_manual_curation. NA 07-JAN-2009 Stenotrophomonas_sp._SKA14_scf_1108481805244_genomic_scaffold,_whole_genome_shotgun_sequence. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Stenotrophomonas_sp_B8L7Q7_9GAMM.gb Stenotrophomonas_Palleroni_and_Bradbury_1993 219718471 Submitted_(22-DEC-2008)_J._Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA DS999412 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives NA 1788 NA genomic_DNA NA SKA14 NA Stenotrophomonas_sp._SKA14 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 391601 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Stenotrophomonas Direct_Submission NA DS999412.1 TCAGCCCCGCTTGCCGGCAAACCGTGCTTCGATCTCTTCCAGCGACTTGCCCTTGGTCTCGGGCAGCCATAGCGCGGCCACCAGGAAGAACACGAAGGTGCACGCCGCCCAGAACACGAACATGCTGGCGTAGCCGTAGTGGCCCACCGTGGGCAGGAAGATCGCGGCGATGGTGGTGGACACGAACTGGTTGATCAGCAGCGCGATGCTCATGCCGTTGGAGCGGATGCGGTTGGGCATCAGTTCGGACAGCGCCAGCCACACGCAGACGCCAGGGCCGACCGCGAAGAACGCGACGAATACCAGGATGCAGGTGGCCACCGCCCAGCCGTGTGCCGGCGGCGGCACCGGGCCGATGCGCGCCTGCTCGATGCGCAGCGGTGCCTGCGCGGCCTTGGCCGGGTCGGCGAACGGGTTCAGATGCAGTTTGCGGAAGAACGCCCCGATCACGCTGTCCGGCTGCACGGTGCCGGTGCGCTCGATGCGCAGTTCGCGGTCGGTCAGGTTATCGCTGCGCAGGGCGCGCACATTGGTGAAATCGCCATAGGCGTACGACACGGTCAGCTGCAGCGGCCGGCCTTCGCTGTCGATGCCCGCGCCCAGGCGTTGCCACTGCGCTTCATCCAGCACCAGCTGCAGGCCATCGCCGCTGACCGCCGCCTGCAGCTGCGCCTGCACGTCGGTACGGCCGCGTTCGGCCTGGAAGAACAGGGTCGCGGCGGCCAGCAGGGCCACGCAGATGCCGCCGCTGCCCAGCATCAGCAGGAACTTGCGGCCCTTGCGATCGACCAGCAGCAGCGCGACCACGGTCATCACCGCATTGAGCAGCTTGATCGCCACGTCGGCGCTGTTGGCCACCGAGCCGGACAGGCCGGCCTGGTTGAGGATGTTCACCGCGTAGGCCAGTACCGAGTTGATGCCGGTGGCCTGGGTGCATGCCAGCACCACGCAGGCGAGCAGGAACGGCACTACATAGCGGCGGCTGAGCAGCGGGTCGCGCTTGCCGCTGCTGCTGCTCGATTCCGGTGCCTGGATCTGTGCAAGCGTCGGCTCCACCTCCGAAGCAGGCAGTACGCGCTGCAGGCTGCGGCGCGCGTCATCGATGCGGCCGCGGCGCACCAGCCAGCGCGGCGACTCGGACAGCCAGAAGATGCCGGCGCAGAACAGCAGGCCCGGCGCCAGGCAGGTCCAGAAGATGGTGCGCCAGGCGTGGTCCTTCACCGTGAACAGTTCCTGCGCCTGCTGCGCGACCGGCATCGAACGCACGGCCTCGGCAGCGGCGTCGACTGCATGTGCGTGGTACAGGCCGATCAGCGCCGCCAGTACCAGGCCGATGGTCAGCAGCAGCTGGAACATCGCCGCACCGCGCCCGCGTCGTTCGGGGCTGAGCACTTCGGCCAGGTACAGCGGAATCACCACGCCGATCAGGCCGCCACTGATGCCCTGCAGCAGGCGGCCCAGCAGCAACGGCGTGTAGCCCGAGGCCAGCGCCATGATCGGGATCGATGCGGTGAACAACAGGCCGGCCAGCAGCATCGCGCCGCGGCGGCCGATCAGGTCGGCGACCATGCCGGCGAACAGCGAGGACAACACGCTGCCCAGCAGTACCGCAGCAACGACAAAACCAAGCTGCTGGCTGCTGAGCTGCCACGCATGGCTGGCCGTTGCCTCCAGGTATGGCAGGGCGCCGGCGATGATGCCGATGTCGATGCCGTACAGCAGGCCGCCGAGGCCGCCGATGAAGAGCAGGTAGCGTACGGGCCAGCGCGGGGCGGTGCTTGCGGTCAT > 1105 STAUR_4301 NA general_substrate_transporter YP_003953908.1 11 MPGVRQRLRSIFSGSVGNLIEWYDFYIYSAFSLYFAKAFFPSGNPLVEQLNTAGVFALGFLVRPLGGWAMGISADLHGRRAALTLSVSLMCLGSLIIALCPTYQQIGVAAPGVLILARLLQGLSLGGEYGTSATYLSEVATSRHRGFYSSFQYVTLILGQLLATVTLLVLQRLVLTQEQLEAWGWRIPFVCGASLSVFGFYMRRNMAETEAFQAEAAKRPVRHPMRELLNHPREIALVVGLTLGGTIAFYTYTVYMQKFLVNSVGLSRDQATLISVASLFLYMLLQPVFGFVSDKVGRRPVLLWFGVMGTLCTVPLLTALTRTRDAWTAFLLVMAALVIVSGYTSINAVVKAELFPASIRALGVGLPYALTVSLFGGTAEYLGTWLKLSGHETWFFWYVTACILCSLLVYLFMRDTQREHRFAEAEHEAPRPRL delta_subgroup Stigmatella_aurantiaca_DW4/3-1 Stigmatella_aurantiaca_DW4/3-1 NC_014623 5248905..5250209 Huntley,S.,_Hamann,N.,_Wegener-Feldbrugge,S.,_Treuner-Lange,A.,_Kube,M.,_Reinhardt,R.,_Klages,S.,_Muller,R.,_Ronning,C.M.,_Nierman,W.C._and_Sogaard-Andersen,L. NA 0:1305 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002271.DNA/bacteria_source:_Lotte_Sogaard-Anderson,_Department_ofEcophysiology,_Max_Planck_Institute_for_Terrestrial_Microbiology,Karl-von-Frisch_Strasse_10,_35043_Marburg,_Germany;_or_RolfMueller,_Department_of_Natural_Products,_Helmholz_Institute_forPharmacological_Research_Saarland,_Saarland_University,_66123Saarbruecken,_Germany.COMPLETENESS:_full_length. NA 26-OCT-2011 Stigmatella_aurantiaca_DW4/3-1_chromosome,_complete_genome. NA Cystobacteraceae_McCurdy_1970 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Stigmatella_aurantiaca_E3FSH0_STIAD.gb Stigmatella_Berkeley_and_Curtis_1875 310817278 Mol._Biol._Evol._28_(2),_1083-1097_(2011) NA NC_014623 NA NA fruiting_gliding_bacteria purple_photosynthetic_bacteria_and_relatives 21037205 1305 NA genomic_DNA NA DW4/3-1 NA Stigmatella_aurantiaca_Berkeley_and_Curtis_1875 NA complement NA NA NA NA Cystobacterineae_Reichenbach_2007 not_Thiobacteria_Cavalier-Smith_2002 NA NA NA NA prokaryotes NA 378806 Bacteria,_Proteobacteria,_Deltaproteobacteria,_Myxococcales,_Cystobacterineae,_Cystobacteraceae,_Stigmatella Comparative_genomic_analysis_of_fruiting_body_formation_in_myxococcales NA NC_014623.1 TTACAGGCGCGGGCGAGGCGCCTCGTGCTCGGCCTCCGCGAACCGGTGCTCCCGCTGCGTGTCCCGCATGAAGAGGTAGACGAGCAGCGAGCACAGGATGCAGGCGGTGACGTACCAGAAGAACCACGTCTCATGGCCCGACAGCTTGAGCCAGGTGCCCAGGTACTCCGCCGTTCCCCCGAAGAGGGAGACGGTCAGCGCGTACGGCAACCCCACGCCCAGGGCGCGGATGCTCGCCGGGAACAGCTCCGCCTTCACCACCGCGTTGATGGACGTGTAGCCCGAGACGATGACCAGCGCCGCCATCACCAGCAGGAACGCCGTCCACGCATCCCGGGTCCGCGTCAACGCCGTCAGCAGGGGCACCGTGCACAGGGTGCCCATCACCCCGAACCACAGCAGCACGGGCCTGCGGCCCACCTTGTCGGAGACGAAGCCGAACACCGGCTGCAACAACATATAAAGGAAGAGGGAGGCCACCGAGATGAGCGTGGCTTGATCTCTCGACAGGCCCACCGAGTTCACCAGGAACTTCTGCATGTAGACGGTGTACGTGTAGAAGGCGATCGTCCCCCCCAGGGTGAGCCCCACGACGAGGGCGATCTCCCGGGGGTGGTTGAGCAGCTCCCGCATGGGGTGGCGCACCGGGCGTTTGGCCGCCTCCGCCTGGAAGGCCTCCGTCTCCGCCATGTTCCGGCGCATGTAGAAGCCGAACACCGACAGGGACGCGCCGCACACGAACGGGATGCGCCAGCCCCACGCCTCGAGCTGCTCCTGGGTGAGCACCAGGCGCTGGAGCACCAGCAACGTCACCGTCGCCAGAAGCTGTCCCAGGATGAGCGTGACGTATTGGAAGGAGCTGTAGAAGCCGCGGTGGCGCGAGGTGGCCACCTCGCTCAGGTACGTGGCGCTGGTGCCGTACTCACCGCCGAGCGAGAGCCCTTGCAGCAGCCGCGCCAGAATGAGCACCCCGGGCGCCGCCACGCCGATCTGCTGGTACGTGGGGCAGAGCGCGATGATGAGCGAGCCCAGGCACATCAGGGAGACGGACAGCGTCAACGCGGCGCGTCGTCCGTGGAGATCCGCGGAGATCCCCATGGCCCAGCCCCCCAGGGGGCGGACCAGGAAGCCCAGGGCGAAGACCCCCGCGGTGTTGAGCTGCTCGACGAGGGGGTTGCCGCTCGGGAAGAACGCCTTGGCGAAGTACAGCGAGAAGGCCGAGTAGATATAGAAGTCGTACCACTCGATGAGGTTGCCGACCGAGCCGCTGAAGATGGAGCGCAGGCGTTGGCGCACGCCGGGCAC > 1106 SP70585_1013 in_Escherichia_coli_BM108,_a_mutation_that_results_in_lack_of_L33_synthesis_had_no_effect_on_ribosome_synthesis_or_function;_there_are_paralogous_genes_in_several_bacterial_genomes,_and_a_CXXC_motif_for_zinc_binding_and_an_upstream_regulation_region_of_the_paralog_lacking_this_motif_that_are_regulated_by_zinc_similar_to_other_ribosomal_proteins_like_L31;_the_proteins_in_this_group_lack_the_CXXC_motif 50S_ribosomal_protein_L33 YP_002740276.1 11 MRVKINLKCSSCGSINYLTSKNSKTHPDKIEVLKYCPKERKVTLHLESK Bacillus/Lactobacillus/Streptococcus_group Streptococcus_pneumoniae_70585 Streptococcus_pneumoniae_70585 NC_012468 930884..932083 NA NA 1199:>1200 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000918.Submission_of_strain_to_ATCC_is_pending.COMPLETENESS:_full_length. NA 27-JAN-2012 Streptococcus_pneumoniae_70585,_complete_genome. NA Streptococcaceae_Deibel_and_Seeley_1974 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptococcus_pneumoniae_C1C6U9_STRP7.gb Streptococcus_Rosenbach_1884 225857809 Submitted_(27-MAR-2009)_National_Center_for_Biotechnology_Information,_NIH,_Bethesda,_MD_20894,_USA NA NC_012468 NA NA Lactobacillales low_GC_Gram+ NA 1200 NA genomic_DNA NA 70585 NA Streptococcus_pneumoniae_(Klein_1884)_Chester_1901 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 488221 Bacteria,_Firmicutes,_Lactobacillales,_Streptococcaceae,_Streptococcus Direct_Submission NA NC_012468.1 ATGACAGAGATTAACTGGAAGGATAATCTGCGCATTGCCTGGTTTGGTAATTTTCTGACAGGAGCCAGTATTTCTTTGGTTGTACCTTTTATGCCCATCTTCGTGGAAAATCTAGGTGTAGGGAGTGAGCAAGTCGCTTTTTATGCAGGCTTAGCAATTTCTGTCTCTGCTATTTCCGCGGCGCTCTTTTCTCCTATTTGGGGTATTCTTGCTGACAAATACGGCCGAAAACCCATGATGATTCGGGCAGGTCTTGCTATGACTATCACTATGGGAGGCTTGGCCTTTGTCCCAAATATCTATTGGTTAATCTTTCTTCGTTTACTAAACGGTGTATTTGCAGGTTTTGTTCCTAATGCAACGGCACTGATAGCCAGTCAGGTTCCAAAGGAGAAATCAGGCTCTGCCTTAGGTACTTTGTCTACAGGCGTAGTTGCAGGTACTCTAACTGGTCCCTTTATTGGTGGCTTTATCGCAGAATTATTTGGCATTCGTACAGTTTTCTTACTGGTTGGTAGTTTTCTATTTTTAGCTGCTATTTTGACTATTTGCTTTATCAAGGAAGATTTTCAACCAGTAGCCAAGGAAAAGGCTATTCCAACAAAGGAATTGTTTACTTCAGTTAAATATCCCTATCTTTTGCTCAATCTCTTTTTAACCAGTTTTGTCATCCAATTTTCAGCTCAATCGATTGGCCCTATTTTGGCTCTTTATGTACGCGACTTAGGGCAGACAGAGAATCTTCTTTTTGTCTCTGGTTTGATTGTGTCCAGTATGGGCTTTTCCAGCATGATGAGTGCAGGAGTCATGGGCAAGCTAGGTGACAAGGTGGGCAATCATCGTCTCTTGGTTGTCGCCCAGTTTTATTCAGTCATCATCTATCTCCTCTGTGCCAATGCCTCTAGCCCCCTTCAACTAGGACTCTATCGTTTCCTCTTTGGATTGGGAACCGGTGCCTTGATTCCCGGGGTTAATGCCCTACTCAGCAAAATGACTCCCAAAGCCGGCATTTCGAGGGTCTTTGCCTTCAATCAGGTATTCTTTTATCTGGGAGGTGTTGTTGGTCCCATGGCAGGTTCTGCAGTAGCAGGTCAATTTGGCTACCATGCTGTCTTTTATGCGACAAGCCTTTGTGTTGCCTTTAGTTGTCTCTTTAACCTGATTCAATTTCGAACATTATTAAAAGTAAAGGAAATCTAG > 1107 stu0623 in_Escherichia_coli_BM108,_a_mutation_that_results_in_lack_of_L33_synthesis_had_no_effect_on_ribosome_synthesis_or_function;_there_are_paralogous_genes_in_several_bacterial_genomes,_and_a_CXXC_motif_for_zinc_binding_and_an_upstream_regulation_region_of_the_paralog_lacking_this_motif_that_are_regulated_by_zinc_similar_to_other_ribosomal_proteins_like_L31;_the_proteins_in_this_group_lack_the_CXXC_motif 50S_ribosomal_protein_L33 YP_139144.1 11 MRVKINLKCSECGSLNYLTSKNKQNHPEKIQVPKFCPKDRKVTLHVES Bacillus/Lactobacillus/Streptococcus_group Streptococcus_thermophilus_LMG_18311 Streptococcus_thermophilus_LMG_18311 NC_006448 588750..589973 Bolotin,A.,_Quinquis,B.,_Renault,P.,_Sorokin,A.,_Ehrlich,S.D.,_Kulakauskas,S.,_Lapidus,A.,_Goltsman,E.,_Mazur,M.,_Pusch,G.D.,_Fonstein,M.,_Overbeek,R.,_Kyprides,N.,_Purnelle,B.,_Prozzi,D.,_Ngui,K.,_Masuy,D.,_Hancy,F.,_Burteau,S.,_Boutry,M.,_Delcour,J.,_Goffeau,A._and_Hols,P. NA 1213:>1224 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000023.COMPLETENESS:_full_length. NA 21-JAN-2012 Streptococcus_thermophilus_LMG_18311_chromosome,_complete_genome. NA Streptococcaceae_Deibel_and_Seeley_1974 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptococcus_thermophilus_Q5M574_STRT2.gb Streptococcus_Rosenbach_1884 55820103 Nat._Biotechnol._22_(12),_1554-1558_(2004) NA NC_006448 NA NA Lactobacillales low_GC_Gram+ 15543133 1224 NA genomic_DNA NA LMG_18311 NA Streptococcus_thermophilus_(Orla-Jensen_1919)_Schleifer_et_al._1995 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 264199 Bacteria,_Firmicutes,_Lactobacillales,_Streptococcaceae,_Streptococcus Complete_sequence_and_comparative_genome_analysis_of_the_dairy_bacterium_Streptococcus_thermophilus NA NC_006448.1 TTGCGCCAAAAAGAGCTTGAAACCGCTGATTGGCAACGAAATCTTAAAATTGCTTGGATAGGAACTTTTTTTACTGGGGCTAGTTTTTCTATTGTCATGCCCTTCATGGCTCTCTATGTAGAAGAACTAGGGGTTAAAGGTGCTATGGTAGAATGGTATGCTGGTTTATCTGTTGCCCTATCTGCTTTAGCTTCAGCCTTGGTTTCACCAGTTTGGGGACACTTGGCGGACCGTTATGGTCGAAAGCCCATGATGATTAGAGCCAGTATGGTCATGACCTTTACAATGGGAGGCTTAGCCTTTGTGCCTAATGTCTTCTGGATGCTTTTTTTGAGAATCTTGAATGGATTGTTTGCAGGTTATGTGCCAAATGCAACAGCTTTGATTGCCAGTCAGGCTCCTCAGCAACGTTCTGGCTATGCCTTGGGCACATTATCAACTGGTCTCACAGCTGGTGTTTTGATTGGCCCTTTGCTAGGTGGTGCCATATCTGAGGCCTTTGGTATGCGAGGGACCTTTCTATTAGTTGGGTTGATTTTGTTTATCTGTTGTCTCTTGACTATCTTTGGTTTGCGAGAGGACTTCCAATTAATTGAAAAGGTAGAGATAATGAGTTTTTCGCAAGTATTTGCTAAAATTCCTAGCAAATCGCTTTTAATTGGCCTCTTTGTGACTAGTATGATTATCCAGATTTCTGCCCAATCAATTGCTCCAATCTTGGCGCTTTATATTCGTTATTTGGGTCAAAGTGATAATATCCTTTTTTACTCAGGGCTAATTGTGTCCGCTATGGGCTTTTCAAGTCTTTTAAGCACTCCTTATTTAGGACGACTTGGTGATCGCATTGGGAATCATCGTTTGCTCTTAATGGGCTTATTCTATAGTTTCCTTTTGTATTTCCTTTGTGGTTTTGCAGGTTCAGCCTTGCAACTTGGCCTTTTACGCTTTGCCTATGGTTTTGGTGTAGGTGCCTTGACGCCTAGTGTCAATTCCTTATTGACCAAGATGACCCCAAAAGAAGGAATTTCAAGAATCTTTAGCCTTAATCAAAGTTTTTCATACATTGGACAAGTTTTAGGACCCTTTGTGGGTTCAGCTGTTGCAACAGGATTAGGCTATCGTTGGGTTTTCTTTGTGACAGCAGCCATCGTCTTTGGAAATTTTGTTTGTTCCTTAATCATCTTTAGAAAATCGCTAGGAGTTAAGAATATAGGTGAGAGTTAA > 1108 SAV_5839 PF00083:_Sugar_(and_other)_transporter integral_membrane_transport_protein NP_827016.1 11 MVAFRLTSGERPPVRPSGPVPVPDERQASGVLTLAPAAPVAPPVPSTTDVTVTDPALVKRAVKAAALGNAMEWFDFGVYSYIAVTLGKVFFPSGNPTAQLLSTFGAFAAAFLVRPLGGMVFGPLGDRIGRQKVLALTMIMMAAGTFAIGLIPSYATIGVGAPLLLLLARLVQGFSTGGEYAGASTFIAEYSPDKKRGFFGSWLEFGTLAGYIGGAGLVTLMTALLSSGDLLSWGWRIPFLIAGPMGIIGLYLRMRLEETPAFAAELAKASKKEQDRPKVPLRAMLSGQWRALLLCMGLVLVFNVTDYMLLSYMPSYLTSELKYDETHGLLVVLGVMALMMIVQPFAGALTDRIGRRPVIAAGCVGFLFLSVPAILLIRQGSLLAVALGMGALGLLLVCFTSAMPAALPALFPTKVRYGSLSIGFNVSVSLFGGTTPLVVTALIGATGNMMMPAYYMMAAAVIGGAAVWFMAESAGRPLPGSAPSVEPAER high_GC_Gram+ Streptomyces_avermitilis_MA-4680 Streptomyces_avermitilis_MA-4680 NC_003155 7044873..7046345 Ikeda,H.,_Ishikawa,J.,_Hanamoto,A.,_Shinose,M.,_Kikuchi,H.,_Shiba,T.,_Sakaki,Y.,_Hattori,M._and_Omura,S. NA 0:1473 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_BA000030.On_Dec_18,_2007_this_sequence_version_replaced_gi:57833846.COMPLETENESS:_full_length. NA 29-AUG-2011 Streptomyces_avermitilis_MA-4680,_complete_genome. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_avermitilis_Q82B66_STRAW.gb Streptoverticillium_Baldacci_1958 162960844 Nat._Biotechnol._21_(5),_526-531_(2003) NA NC_003155 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 12692562 1473 NA genomic_DNA NA MA-4680;_ATCC_31267;_NCIMB_12804;_NRRL_8165 NA Streptomyces_avermitilis_(ex_Burg_et_al._1979)_Kim_and_Goodfellow_2002 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 227882 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces Complete_genome_sequence_and_comparative_analysis_of_the_industrial_microorganism_Streptomyces_avermitilis NA NC_003155.4 TCAGCGTTCGGCGGGCTCCACCGAAGGCGCCGAGCCCGGCAGCGGGCGGCCCGCCGACTCCGCCATGAACCACACCGCGGCGCCGCCGATCACGGCCGCCGCCATCATGTAGTACGCGGGCATCATCATGTTCCCGGTCGCCCCGATCAGCGCCGTGACCACCAGCGGGGTCGTACCGCCGAAGAGCGAGACGGAGACGTTGAAGCCGATGGACAGCGAGCCGTAGCGGACCTTCGTCGGGAACAGTGCGGGCAGCGCGGCCGGCATCGCGGAGGTGAAGCAGACCAGCAGCAGGCCCAGCGCGCCCATGCCGAGCGCGACGGCGAGCAGGCTGCCCTGACGGATCAGCAGGATGGCCGGGACCGACAGGAACAGGAAGCCCACGCAGCCCGCGGCGATCACCGGGCGGCGGCCGATCCGGTCCGTCAGCGCACCCGCGAAGGGCTGCACGATCATCATCAGCGCCATCACGCCGAGCACGACCAGCAGGCCGTGCGTCTCGTCGTACTTCAGCTCGCTCGTCAGATAGCTCGGCATGTACGAGAGCAGCATGTAGTCGGTGACGTTGAAGACGAGCACCAGGCCCATGCACAGGAGCAGCGCGCGCCACTGGCCGGAGAGCATGGCGCGCAGCGGCACCTTCGGGCGGTCCTGCTCCTTCTTCGAGGCCTTCGCCAGCTCCGCCGCGAAGGCCGGCGTCTCCTCGAGACGCATCCGCAGGTAGAGGCCGATGATGCCCATCGGGCCCGCGATCAGGAACGGGATGCGCCAGCCCCAGGACAGCAGGTCGCCGGAGGACAGCAGGGCGGTCATCAGGGTGACCAGGCCCGCGCCGCCGATGTACCCGGCGAGCGTGCCGAACTCCAGCCAGCTCCCGAAGAAGCCGCGCTTCTTGTCGGGCGAGTACTCGGCGATGAACGTGGACGCGCCCGCGTACTCGCCGCCGGTCGAGAAGCCCTGGACCAGGCGGGCCAGCAGGAGCAGCAGCGGCGCCCCCACGCCGATCGTGGCGTACGACGGGATCAGACCGATCGCGAACGTGCCCGCCGCCATCATGATCATGGTGAGGGCGAGGACCTTCTGCCGGCCGATCCGGTCGCCGAGCGGGCCGAAGACCATGCCGCCGAGCGGGCGGACGAGGAAGGCCGCGGCGAAGGCGCCGAAGGTGGAGAGCAGCTGCGCCGTGGGGTTGCCCGACGGGAAGAAGACCTTGCCCAGCGTCACCGCGATGTAGCTGTAGACGCCGAAGTCGAACCACTCCATGGCGTTGCCCAGTGCGGCGGCCTTGACGGCGCGTTTGACCAGGGCGGGGTCCGTGACGGTGACATCCGTCGTCGAAGGGACGGGGGGTGCTACGGGTGCTGCTGGTGCGAGGGTCAAGACTCCGCTCGCCTGCCTTTCGTCGGGGACAGGGACAGGGCCGCTGGGGCGGACCGGGGGCCGCTCACCGGAAGTGAGCCGAAAAGCGACCAT > 1109 SAV_1779 PF00083:_Sugar_(and_other)_transporter 3-(2-hydroxyphenyl)_propionic_acid_transporter NP_822955.1 11 MSVPAAPHDAPPGQPRKAALAAWIGSALEYYDFFIYGSAAALIFPKVFFDESDPADATLLSLATFGVAYAARPVGALFLGHFGDHLGRKKIMVFTLILMGLSTFLIGCLPTRAQVGGLAPVLLVLCRVLQGVSAAGEQASANSMTLEHAPPHRRGYFTSFTLNGTQAGQLLATLVFLPVAALPEDQLLSWGWRVPFWLSVAVAVAGYVIRRTLQETPAFAQQAAADGVAKLPLAVLLREHWADVLRVVAAALIASVSTIFTVWALAYATSDSVGLSRSSMLWVGALANLVALGAIPLWAVLSDRVGRRPVFLIGAVGSAVLMFLYLWAISTGSYPLVLLLGVLTFGVVYSAANGIWPSFYGEMFSTRVRLSGMAIGTQIGFAVAGFAVTFAAQIAGPDGDDWSSVALFASALCIPPIVAALTARETHKVPTELLGERPAQGAANRETVTA high_GC_Gram+ Streptomyces_avermitilis_MA-4680 Streptomyces_avermitilis_MA-4680 NC_003155 2175736..2177088 Ikeda,H.,_Ishikawa,J.,_Hanamoto,A.,_Shinose,M.,_Kikuchi,H.,_Shiba,T.,_Sakaki,Y.,_Hattori,M._and_Omura,S. NA 0:1353 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_BA000030.On_Dec_18,_2007_this_sequence_version_replaced_gi:57833846.COMPLETENESS:_full_length. NA 29-AUG-2011 Streptomyces_avermitilis_MA-4680,_complete_genome. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_avermitilis_Q82M81_STRAW.gb Streptoverticillium_Baldacci_1958 162960844 Nat._Biotechnol._21_(5),_526-531_(2003) NA NC_003155 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 12692562 1353 NA genomic_DNA NA MA-4680;_ATCC_31267;_NCIMB_12804;_NRRL_8165 NA Streptomyces_avermitilis_(ex_Burg_et_al._1979)_Kim_and_Goodfellow_2002 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 227882 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces Complete_genome_sequence_and_comparative_analysis_of_the_industrial_microorganism_Streptomyces_avermitilis NA NC_003155.4 GTGTCCGTCCCCGCCGCCCCGCACGACGCGCCACCCGGCCAGCCGAGGAAGGCCGCGCTCGCCGCCTGGATCGGCAGCGCCCTGGAGTACTACGACTTCTTCATCTACGGCAGCGCCGCCGCGCTGATCTTCCCGAAGGTCTTCTTCGACGAGTCGGACCCCGCCGACGCGACGCTGCTCTCCCTGGCCACCTTCGGTGTCGCCTACGCCGCCCGCCCGGTCGGCGCGCTGTTCCTCGGCCACTTCGGCGACCACCTGGGCCGTAAGAAGATCATGGTCTTCACGCTGATCCTGATGGGCCTGTCGACGTTCCTCATCGGCTGTCTGCCCACCCGCGCCCAGGTCGGCGGCCTGGCCCCGGTGCTGCTCGTGCTCTGCCGTGTCCTCCAGGGCGTCTCCGCCGCCGGCGAGCAGGCCAGCGCCAACTCGATGACGCTGGAACACGCGCCACCGCACCGCCGCGGCTACTTCACCAGCTTCACCCTGAACGGCACCCAGGCGGGACAGCTTCTCGCCACCCTCGTCTTCCTCCCCGTCGCCGCGCTCCCCGAGGACCAACTGCTCTCCTGGGGCTGGCGCGTTCCGTTCTGGCTGAGCGTCGCGGTGGCCGTCGCCGGCTACGTCATCCGCCGCACCCTCCAGGAGACTCCGGCCTTCGCCCAGCAGGCCGCGGCCGACGGTGTCGCGAAGCTGCCGCTCGCCGTGCTGCTGCGCGAGCACTGGGCCGATGTGCTGCGTGTGGTCGCCGCCGCCCTCATCGCCTCCGTGAGCACGATCTTCACGGTGTGGGCGCTGGCGTACGCGACCAGCGACTCGGTCGGCCTGAGCCGCTCGTCCATGCTGTGGGTGGGCGCGCTCGCCAACCTGGTCGCCCTCGGCGCGATCCCGCTCTGGGCCGTCCTGTCCGACCGCGTCGGCCGCCGCCCGGTCTTCCTGATCGGCGCCGTCGGCAGCGCGGTGCTGATGTTCCTCTACCTGTGGGCCATCTCCACCGGCTCCTACCCTCTGGTCCTGCTGCTCGGCGTCCTCACCTTCGGTGTCGTCTACAGCGCCGCCAACGGCATCTGGCCCTCCTTCTACGGGGAGATGTTCTCCACCCGCGTCCGCCTCTCGGGCATGGCCATCGGCACGCAGATCGGTTTCGCGGTCGCCGGCTTCGCCGTCACCTTCGCCGCGCAGATCGCCGGTCCGGACGGCGACGACTGGTCCTCGGTCGCCCTCTTCGCCTCGGCCCTGTGCATTCCGCCGATCGTCGCGGCGCTCACCGCCCGCGAGACGCACAAGGTACCGACGGAACTGCTCGGCGAGCGCCCGGCGCAGGGGGCCGCGAACCGCGAGACCGTGACGGCCTGA > 1110 SBI_03175 COG0477_Permeases_of_the_major_facilitator_superfamily putative_integral_membrane_transport_protein ADI06296.1 11 MSRLDPGSGTENRAQIRRVVLSGWLGSTIEYYDFLLYGTAASLVFDKLFFTNLSPVAGTIASFGTFAVGYLARPLGGAIFGHFGDRLGRKAMLVVSMAMMGIASTLIGLLPTHDQVGNLAPTLLIVLRLIQGVAVGGEWGGAALLTAEHASSRRRGLLTSLVQMGGPAGTVLSTLALMLFSTLPDDEFLSWGWRIPFLLSAALLTIGLFVRLKVTESPLFTEVQQSESVVRRPLVEIFRKPKPLFQACFVVFGATVSQALTSVFAISFAKDVGYGRTEILIGQLVNGVAAAIAIPVSAAWSDRVGRRPVLLGAALTLGAMAFPVFALINTGSLPLMLIALGILAPLPMGSLLGPVPALFSEMFGTSTRYTGVSMGYQLAAVVGGGLAPLIGALLLSANGGDDPWLVALYMLATCLVSATVVWHTAETRGRDLALESTAPPLGEGADNGAKAAVLAAPYQARDEVAGDLDAR high_GC_Gram+ Streptomyces_bingchenggensis_BCW-1 Streptomyces_bingchenggensis_BCW-1 CP002047 4139232..4140647 Wang,X.J.,_Yan,Y.J.,_Zhang,B.,_An,J.,_Wang,J.J.,_Tian,J.,_Jiang,L.,_Chen,Y.H.,_Huang,S.X.,_Yin,M.,_Zhang,J.,_Gao,A.L.,_Liu,C.X.,_Zhu,Z.X._and_Xiang,W.S. NA 0:1416 Source_DNA_is_available_from_Yijun_Yan,_quasar110@126.com.Bacteria_available_from_China_General_Microbiology_CultureCollection_Center_(Accession_No:CGMCC1734),_Institute_ofMicrobiology,_Chinese_Academy_of_Sciences.Genome_was_manually_curated_based_on_annotation_generated_by_theNCBI_Prokaryotic_Genomes_Automatic_Annotation_Pipeline_Group.Information_about_the_Pipeline_can_be_found_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. NA 21-NOV-2011 Streptomyces_bingchenggensis_BCW-1,_complete_genome. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_bingchenggensis_D7C8A7_STRBB.gb Streptoverticillium_Baldacci_1958 297153409 J._Bacteriol._192_(17),_4526-4527_(2010) NA CP002047 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 20581206 1416 NA genomic_DNA NA BCW-1 NA Streptomyces_bingchenggensis NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 749414 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces Genome_Sequence_of_the_Milbemycin-Producing_Bacterium_Streptomyces_bingchenggensis NA CP002047.1 ATGTCTCGGCTCGACCCGGGATCCGGCACGGAAAACCGTGCGCAGATCCGCCGTGTCGTGCTGTCCGGCTGGCTCGGCAGCACGATCGAGTACTACGACTTCCTCCTCTACGGCACTGCCGCATCCCTCGTGTTCGACAAGCTCTTCTTCACCAACCTCTCCCCCGTGGCCGGGACGATCGCCTCCTTCGGCACCTTCGCCGTCGGCTATCTGGCCCGCCCCCTGGGCGGGGCGATCTTCGGTCACTTCGGGGACCGGCTCGGCCGCAAGGCGATGCTGGTGGTCTCGATGGCGATGATGGGCATCGCCAGCACGCTCATCGGCCTTCTCCCCACACATGACCAGGTCGGCAACCTGGCACCCACGCTCCTGATCGTGCTGCGGCTCATCCAGGGTGTCGCCGTCGGCGGCGAGTGGGGCGGGGCCGCGCTGCTGACCGCCGAGCACGCGTCGTCGCGCCGGCGCGGACTGCTGACCAGTCTGGTGCAGATGGGAGGGCCGGCCGGTACGGTGCTGTCCACGCTCGCCCTCATGCTGTTCTCCACCCTGCCCGACGACGAGTTCCTGTCCTGGGGCTGGCGGATCCCGTTCCTGCTGAGTGCAGCCCTGCTCACGATCGGCCTGTTCGTACGGCTGAAGGTGACCGAGAGCCCGCTGTTCACCGAGGTCCAGCAGAGCGAGTCCGTGGTGCGCAGACCGCTGGTCGAGATCTTCCGCAAGCCCAAGCCCCTGTTTCAGGCGTGCTTCGTGGTCTTCGGAGCCACCGTGTCCCAGGCCCTGACCAGTGTCTTCGCCATCAGCTTCGCGAAGGACGTCGGCTATGGGCGCACCGAGATCCTGATCGGCCAACTGGTCAACGGCGTTGCGGCGGCGATCGCGATACCGGTCTCCGCGGCCTGGTCCGACCGGGTCGGCCGGCGTCCGGTCCTGCTGGGCGCGGCGCTCACCCTCGGCGCCATGGCGTTCCCGGTCTTCGCCCTGATCAACACGGGGTCGCTGCCGCTGATGCTGATCGCGCTGGGAATCCTCGCGCCGCTGCCGATGGGCTCGCTGCTCGGCCCGGTGCCCGCGCTGTTCTCCGAGATGTTCGGCACCAGCACCCGCTACACCGGGGTGTCCATGGGCTACCAGCTGGCCGCCGTCGTCGGCGGCGGCCTCGCGCCGCTGATCGGGGCGCTTCTGCTGTCGGCCAACGGAGGCGACGACCCCTGGCTGGTCGCGCTGTACATGCTGGCCACCTGCCTGGTCAGCGCCACCGTGGTCTGGCACACCGCCGAGACCCGGGGACGGGATCTCGCGCTTGAGTCGACTGCTCCGCCGTTGGGAGAAGGTGCGGACAACGGAGCCAAGGCGGCAGTGCTCGCCGCTCCTTACCAGGCGCGCGACGAGGTCGCGGGGGATCTCGATGCCCGGTAG > 1111 SCLAV_5532 COG:COG0477_Permeases_of_the_major_facilitator_superfamily. major_facilitator_superfamily_permease EFG10599.1 11 MTDDARTTAAPDGRQTSGGITRIVGASLIGATIEWYDFFLYGTAAALVFNTVFFPTDDPLVGTLIAFVTYAIGFAARPLGGLVFGHYGDRIGRKKLLVLSLLLMGGSTFAMGLLPTYDSIGVAAPILLTVLRLVQGFALGGEWGGAVLIVSEHGGDRHRGFWASWPQAGVPCGNLLATGVLALLASVQSDAAFQSWGWRVPFLLSGVLVAIGLWIRVSVSESPVFLEARAKAEAAAARGVKRQAPVVEVFRRNRREVLGAMGVRFGENVSYYILTSFLLVYVTNHLDLPKSTALNAVLIASALHFLTIPLWGALSDRWGRRPVTLIGSVGMAGWAFAFFTLVDTGSFLVITLAVTVGLLFHGAMLGPQAAFISEMFDTEIRYSGASMGSQLATIVAGALAPIIAVELLKDYDSAGPVALYLSAAAIVTTLTTVVVRETRGRDLSRPAAPEPAPVPARAGAGDASAGPVREARGAGTDPK high_GC_Gram+ Streptomyces_clavuligerus_ATCC_27064 Streptomyces_clavuligerus_ATCC_27064 CM000913 6512237..6513676 Medema,M.H.,_Trefzer,A.,_Kovalchuk,A.,_van_den_Berg,M.,_Muller,U.,_Heijne,W.,_Wu,L.,_Alam,M.T.,_Ronning,C.M.,_Nierman,W.C.,_Bovenberg,R.A.,_Breitling,R._and_Takano,E. NA 0:1440 This_record_represents_the_linear_chromosome.##Genome-Assembly-Data-START##Assembly_Method_::_Celera_Assembler_v._3.10Assembly_Name_::_Strep_clav_ATCC27064Genome_Coverage_::_11.8xSequencing_Technology_::_ABI##Genome-Assembly-Data-END## NA 07-APR-2010 Streptomyces_clavuligerus_ATCC_27064_chromosome,_whole_genome_shotgun_sequence. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_clavuligerus_E2Q1H3_STRCL.gb Streptoverticillium_Baldacci_1958 294323433 Genome_Biol_Evol_2,_212-224_(2010) NA CM000913 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 20624727 1440 NA genomic_DNA NA ATCC_27064 NA Streptomyces_clavuligerus_Higgens_and_Kastner_1971 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 443255 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces The_sequence_of_a_1.8-mb_bacterial_linear_plasmid_reveals_a_rich_evolutionary_reservoir_of_secondary_metabolic_pathways NA CM000913.1 ATGACTGACGACGCCCGTACCACCGCCGCGCCGGACGGCCGCCAGACCTCCGGCGGTATCACCCGCATCGTCGGCGCCAGCCTGATCGGCGCCACCATCGAGTGGTACGACTTCTTCCTCTACGGCACCGCCGCCGCGCTGGTCTTCAACACCGTCTTCTTCCCCACCGACGACCCCCTGGTGGGCACCCTCATCGCCTTTGTCACCTACGCCATCGGATTCGCCGCCCGTCCGCTGGGCGGTCTGGTCTTCGGCCACTACGGCGACCGGATCGGCCGCAAGAAACTCCTGGTGCTCAGCCTGCTGCTGATGGGCGGGTCGACCTTCGCGATGGGCCTGCTGCCCACCTACGACTCCATCGGGGTCGCCGCGCCGATCCTGCTCACCGTGTTGCGGCTGGTACAGGGCTTCGCACTCGGCGGCGAGTGGGGCGGCGCCGTGCTGATCGTCTCCGAACACGGCGGCGACCGGCACCGCGGCTTCTGGGCCTCCTGGCCCCAGGCCGGAGTCCCCTGCGGCAACCTCCTCGCCACCGGAGTGCTGGCGCTGCTCGCCTCCGTCCAGTCCGACGCGGCCTTCCAGTCCTGGGGCTGGCGCGTCCCCTTCCTGCTCTCCGGGGTGCTCGTGGCGATCGGGCTCTGGATTCGCGTCTCGGTCTCCGAGTCCCCCGTCTTCCTGGAGGCCCGGGCGAAGGCGGAGGCCGCGGCGGCGCGCGGCGTCAAGCGCCAGGCGCCGGTCGTCGAGGTGTTCCGCCGCAACCGGCGCGAGGTGCTGGGCGCGATGGGCGTCCGGTTCGGCGAGAACGTCTCCTACTACATCCTCACCTCCTTCCTCCTGGTGTACGTCACCAACCATCTCGACCTGCCCAAGAGCACCGCCCTCAACGCCGTACTGATCGCTTCCGCCCTCCACTTCCTCACCATTCCGCTGTGGGGGGCGCTCTCCGACCGGTGGGGCCGCAGACCGGTGACCCTGATCGGATCGGTCGGCATGGCCGGATGGGCGTTCGCCTTCTTCACCCTCGTGGACACCGGGTCCTTCCTGGTGATCACGCTGGCGGTGACGGTGGGGCTGCTGTTCCACGGCGCCATGCTCGGGCCGCAGGCGGCCTTCATCTCCGAGATGTTCGACACCGAGATCCGCTACTCCGGCGCCTCGATGGGCTCCCAGCTCGCCACCATCGTCGCCGGGGCACTGGCGCCCATCATCGCCGTCGAACTGCTGAAGGACTACGACTCGGCGGGCCCCGTCGCCCTCTATCTGAGCGCCGCCGCGATCGTCACGACCCTCACCACCGTCGTGGTGCGGGAGACACGGGGACGCGATCTGAGCCGCCCCGCCGCACCGGAGCCCGCGCCCGTGCCCGCGCGGGCCGGGGCCGGGGACGCCTCCGCCGGGCCCGTACGCGAGGCCCGTGGCGCCGGAACCGACCCGAAGTGA > 1112 SCLAV_0197 COG:COG0477_Permeases_of_the_major_facilitator_superfamily. Sugar_transport_protein EFG05273.1 11 MTRRSSSRPDPVAFSTVTTTIPARLDRLPWSRWHWTVVVGLGAVWILDGLEVTVVGSVASRLAEEGSGLPITVAQVTGTAAALYVAGACLGALFFGRLTDRHGRTGLFLVTLAVYVMSTALSAASVSVWWFFLFRFLAGFGIGGEYAAVNSAIDELIPSRYRGRVDLVVNGSYWIGAMGGALLSVVALDTRLLPRDLGWRLTFAVGVVLGLAVLLVRRRLPESPRWLLIHGREREAERLVDAIERRVERQTGRALSPVAKEITVRQRPGVGFLEIARTLFTVYPRRAVLGFALFIGGAFLYNAITFGFGSILVEFFGVDSGATGYWFAVVAFGNFLGPLLLGPLFDTWGRRPMIAGTYVLSGVLLFLTAWVFGAGLLDATTMTMCWAVVLFFASAGVSSAYLTVSEIFPMETRAMSIAFFYALGTAAGGISGPLVFADLTSSGRVDDAVLAFCVGAALMVLAGLVAAVFAVPAERRSLEDIAAPLSALDPGAPAGPGRSGGRDGSGAPGEAGEGEYGDPGERSGIPGG high_GC_Gram+ Streptomyces_clavuligerus_ATCC_27064 Streptomyces_clavuligerus_ATCC_27064 CM000913 288992..290578 Medema,M.H.,_Trefzer,A.,_Kovalchuk,A.,_van_den_Berg,M.,_Muller,U.,_Heijne,W.,_Wu,L.,_Alam,M.T.,_Ronning,C.M.,_Nierman,W.C.,_Bovenberg,R.A.,_Breitling,R._and_Takano,E. NA 0:1587 This_record_represents_the_linear_chromosome.##Genome-Assembly-Data-START##Assembly_Method_::_Celera_Assembler_v._3.10Assembly_Name_::_Strep_clav_ATCC27064Genome_Coverage_::_11.8xSequencing_Technology_::_ABI##Genome-Assembly-Data-END## NA 07-APR-2010 Streptomyces_clavuligerus_ATCC_27064_chromosome,_whole_genome_shotgun_sequence. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_clavuligerus_E2Q726_STRCL.gb Streptoverticillium_Baldacci_1958 294323433 Genome_Biol_Evol_2,_212-224_(2010) NA CM000913 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 20624727 1587 NA genomic_DNA NA ATCC_27064 NA Streptomyces_clavuligerus_Higgens_and_Kastner_1971 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 443255 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces The_sequence_of_a_1.8-mb_bacterial_linear_plasmid_reveals_a_rich_evolutionary_reservoir_of_secondary_metabolic_pathways NA CM000913.1 TCAGCCCCCGGGGATACCGGACCTCTCACCAGGATCGCCGTACTCCCCCTCACCGGCCTCCCCGGGCGCCCCGGAGCCGTCTCGTCCGCCGGACCGGCCCGGCCCGGCGGGGGCGCCCGGGTCCAGCGCCGAGAGCGGGGCCGCGATGTCCTCCAGGGAGCGCCGTTCGGCGGGGACCGCGAAGACCGCGGCGACCAGCCCCGCGAGCACCATCAGCGCCGCGCCGACACAGAACGCGAGGACGGCGTCGTCCACCCGTCCGCTCGATGTGAGGTCGGCGAAGACCAGCGGCCCGGAGATGCCGCCCGCCGCCGTGCCGAGGGCGTAGAAGAAGGCGATGGACATCGCCCGGGTCTCCATCGGGAAGATCTCGCTCACGGTCAGATACGCGGAGCTGACCCCGGCGGACGCGAAGAAGAGCACCACCGCCCAGCACATGGTCATCGTGGTGGCGTCGAGCAGCCCCGCGCCGAAGACCCACGCCGTGAGGAAGAGCAGCACCCCGGAGAGGACATAGGTCCCGGCGATCATCGGGCGCCTGCCCCAGGTGTCGAACAGCGGACCGAGCAGCAGCGGACCGAGGAAGTTGCCGAACGCGACGACCGCGAACCAGTAGCCGGTGGCGCCGCTGTCGACCCCGAAGAACTCCACCAGGATGGAACCGAAGCCGAAGGTGATGGCGTTGTAGAGGAAGGCGCCGCCGATGAAGAGCGCGAAGCCGAGCACCGCCCGCCGGGGGTAGACGGTGAAGAGCGTCCGGGCGATCTCCAGGAAGCCGACGCCGGGCCGCTGACGGACCGTGATCTCCTTCGCCACCGGGGACAGGGCCCGTCCCGTCTGCCGCTCCACCCGCCGTTCGATCGCGTCCACCAGCCGCTCCGCCTCCCGTTCCCGGCCGTGGATCAGCAGCCAGCGCGGGCTCTCCGGCAGCCTGCGGCGCACCAGCAGAACGGCCAGGCCCAGCACCACACCGACGGCGAAGGTCAGCCGCCAGCCCAGATCACGGGGGAGCAGACGGGTGTCCAGCGCCACCACCGAGAGCAGCGCGCCGCCCATCGCCCCGATCCAGTAGCTGCCGTTGACGACCAGGTCGACCCGGCCCCGGTAGCGGCTGGGGATCAGCTCGTCGATGGCGGAGTTGACGGCCGCGTACTCGCCGCCGATCCCGAATCCGGCCAGGAAGCGGAAGAGGAAGAACCACCAGACGGAGACGGACGCGGCGCTGAGCGCGGTGGACATGACATAGACCGCCAGGGTGACGAGGAAGAGCCCGGTGCGGCCGTGGCGGTCGGTGAGTCTGCCGAAGAAGAGCGCCCCCAGACAGGCCCCGGCCACATAGAGGGCGGCGGCGGTCCCGGTGACCTGGGCGACCGTGATCGGCAGTCCGCTGCCCTCCTCGGCCAGACGGCTCGCGACACTGCCGACGACGGTGACCTCCAGACCGTCGAGTATCCAGACGGCCCCCAGCCCGACGACGACGGTCCAGTGCCAGCGTGACCAGGGGAGACGGTCGAGCCGGGCGGGGATCGTGGTGGTGACGGTGGAGAAGGCGACAGGATCGGGACGAGAGCTGCTCCTACGGGTCAT > 1113 SCO7153 SC9A4.15,_probable_sugar_transporter,_len:_472_aa;_identical_to_TR:Q9ZBQ1_(EMBL:AL034447)_Streptomyces_coelicolor_sugar_transporter_SC7A1.22,_473_aa_and_highly_similar_to_SW:GLCP_SYNY3_(EMBL:X15988)_Synechocystis_sp._glucose_transport_protein_GlcP,_468_aa;_fasta_scores:_opt:_1477_z-score:_1671.3_E():_0;_50.6%_identity_in_468_aa_overlap._Contains_Pfam_match_to_entry_PF00083_sugar_tr,_Sugar_(and_other)_transporter_and_matches_to_Prosite_entries_PS00012_Phosphopantetheine_attachment_site,_PS00217_Sugar_transport_proteins_signature_2_and_PS00216_Sugar_transport_proteins_signature_1._Also_contains_possible_hydrophobic_membrane_spanning_regions sugar_transporter NP_631212.1 11 MASTSQAPSPGAGTAHPDHLGHVIFIAAAAAMGGFLFGYDSSVINGAVEAIRDRYDVGSAVLAQVIAVALIGCAIGAATAGRIADRIGRIRCMQIAAVLFTVSAVGSALPFALWDLAMWRIIGGFAIGMASVIGPAYIAEVSPPAYRGRLGSFQQAAIVIGIAVSQLVNWGLLNAAGGDQRGELMGLEAWQVMLGVMVIPAVLYGLLSFAIPESPRFLISVGKRERAKKILEEVEGKDVDFDARVTEIEHAMHREEKSSFKDLLGGSFFFKPIVWIGIGLSVFQQFVGINVAFYYSSTLWQSVGVDPADSFFYSFTTSIINIVGTVIAMIFVDRVGRKPLALIGSVGMVIGLALEAWAFSFDLVDGKLPATQGWVALIAAHVFVLFFALSWGVVVWVFLGEMFPNRIRAAALGVAASAQWIANWAITASFPSLADWNLSGTYVIYTIFAALSIPFVLKFVKETKGKALEEMG high_GC_Gram+ Streptomyces_coelicolor_A3(2) Streptomyces_coelicolor_A3(2) NC_003888 7946421..7947839 Hsiao,N.H._and_Kirby,R. NA 0:1419 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AL645882.On_Jun_22,_2003_this_sequence_version_replaced_gi:31340543.COMPLETENESS:_full_length. NA 19-JAN-2012 Streptomyces_coelicolor_A3(2)_chromosome,_complete_genome. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_coelicolor_Q9ZBQ1_STRCO.gb Streptoverticillium_Baldacci_1958 32141095 Antonie_Van_Leeuwenhoek_93_(1-2),_1-25_(2008) NA NC_003888 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 17588127 1419 NA genomic_DNA NA NA NA Streptothrix_coelicolor NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 100226 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces Comparative_genomics_of_Streptomyces_avermitilis,_Streptomyces_cattleya,_Streptomyces_maritimus_and_Kitasatospora_aureofaciens_using_a_Streptomyces_coelicolor_microarray_system NA NC_003888.3 GTGGCCAGCACATCGCAGGCGCCCAGTCCAGGAGCCGGGACGGCTCATCCCGATCATCTCGGGCACGTCATCTTCATCGCGGCGGCGGCCGCGATGGGCGGTTTCCTGTTCGGTTACGACAGTTCCGTGATCAACGGTGCGGTCGAGGCGATCCGGGACCGCTACGACGTCGGTTCCGCGGTGCTGGCGCAGGTCATCGCCGTGGCTCTGATCGGCTGTGCCATCGGTGCCGCGACCGCGGGCCGTATCGCGGACCGTATCGGCCGTATCCGCTGCATGCAGATCGCCGCGGTCCTGTTCACGGTGAGCGCCGTCGGCTCCGCGCTGCCCTTCGCGCTGTGGGACCTGGCCATGTGGCGGATCATCGGCGGTTTCGCGATCGGCATGGCCTCGGTGATCGGCCCCGCCTACATCGCCGAGGTGTCCCCGCCCGCCTACCGCGGCCGGCTCGGTTCCTTCCAGCAGGCCGCGATCGTCATCGGCATCGCCGTCTCCCAGCTGGTCAACTGGGGTCTGCTGAACGCCGCCGGCGGTGACCAGCGCGGCGAGCTGATGGGCCTGGAGGCCTGGCAGGTCATGCTCGGCGTCATGGTGATCCCGGCCGTCCTGTACGGCCTGCTGTCCTTCGCCATCCCCGAGTCCCCCCGCTTCCTGATCTCGGTGGGCAAGCGCGAGCGCGCCAAGAAGATCCTCGAGGAGGTCGAGGGCAAGGACGTGGACTTCGACGCCCGCGTCACCGAGATCGAGCACGCCATGCACCGCGAGGAGAAGTCCTCCTTCAAGGACCTCCTCGGCGGCAGCTTCTTCTTCAAGCCGATCGTGTGGATCGGTATCGGCCTGTCGGTCTTCCAGCAGTTCGTCGGCATCAACGTCGCGTTCTACTACTCCTCGACGCTGTGGCAGTCGGTCGGCGTCGACCCCGCCGACTCGTTCTTCTACTCGTTCACGACGTCGATCATCAACATCGTCGGCACCGTGATCGCGATGATCTTCGTGGACCGCGTCGGCCGCAAGCCGCTCGCCCTGATCGGCTCCGTCGGCATGGTGATCGGGCTGGCGCTGGAGGCCTGGGCCTTCTCCTTCGACCTGGTCGACGGGAAACTCCCGGCCACCCAGGGCTGGGTCGCCCTGATCGCCGCCCACGTCTTCGTCCTCTTCTTCGCCCTGTCGTGGGGTGTGGTCGTGTGGGTCTTCCTCGGCGAGATGTTCCCCAACCGGATCCGCGCCGCCGCGCTGGGCGTGGCCGCCTCCGCGCAGTGGATCGCCAACTGGGCCATCACCGCGAGCTTCCCGTCACTGGCCGACTGGAACCTCTCCGGCACCTACGTGATCTACACGATCTTCGCCGCCCTCTCCATCCCCTTCGTCCTCAAGTTCGTGAAGGAGACCAAGGGCAAGGCCCTGGAGGAAATGGGCTGA > 1114 SSOG_00584 NA putative_metabolite_transport_protein_YaaU EFL20872.1 11 MSTASLEKSRPTRTHWLITLYAGGGEFCDGYILSIIGVALPLLTADYHLNSFDAGVVGSASLVGMFAGGLIFGYVTDLVGRQKVYLFDIAAFIVLSAAQFFVTDPWQLTVLRFLMGIAIGADFAIAGTIASEFAPRNSRGPLLVIMVTMWSVGAAVAYVVGWAMMSSGHDDWRWMLASSAIPAVLILLLRFGTPESPRWLLSKGRTDEAEAVLKQMLGPDATLAELEADTASRTRYGDIFRGAYLRRTVFISVFWACQLLPIYAITTYEPTILASFGLADGNDSYLGSVVVQIFFVLGSLSGILVVNKGRRTLLLWSFGLSAIPLLALAAFAHPAPAVVVVLFAAFGVACFSSQCLQAIYPSELFPTGVRATANGFATGISRIGAALGTWGAPVVLAHSTRLAMLLGAVICVIGWAASYVLAPETSGLTLADASAVDRDGDPRGRSRLRRGTAADPTTPRPTVKETS high_GC_Gram+ Streptomyces_himastatinicus_ATCC_53653 Streptomyces_himastatinicus_ATCC_53653 GG657754 833026..834429 Fischbach,M.,_Godfrey,P.,_Ward,D.,_Young,S.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Bochicchio,J.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Straight,P.,_Clardy,J.,_Hung,D.,_Kolter,R.,_Mekalanos,J.,_Walker,S.,_Walsh,C.T.,_Wieland-Brown,L.C.,_Haas,B.,_Nusbaum,C._and_Birren,B. NA 0:1404 Annotation_was_added_to_the_scaffolds_in_August_2010.##Genome-Assembly-Data-START##Assembly_Method_::_Arachne_v._April_2007Genome_Coverage_::_6xSequencing_Technology_::_ABI##Genome-Assembly-Data-END## NA 10-AUG-2010 Streptomyces_hygroscopicus_ATCC_53653_genomic_scaffold_supercont1.1,_whole_genome_shotgun_sequence. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_himastatinicus_D9WCC5_9ACTO.gb Streptoverticillium_Baldacci_1958 224461115 Unpublished NA GG657754 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1404 NA genomic_DNA NA ATCC_53653 NA Streptomyces_himastatinicus_Kumar_and_Goodfellow_2008 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 457427 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces Annotation_of_Streptomyces_hygroscopicus_strain_ATCC_53653 NA GG657754.1 TCATGACGTCTCCTTCACCGTGGGCCGCGGTGTGGTCGGGTCGGCGGCGGTGCCGCGGCGGAGGCGGGAGCGGCCGCGCGGATCGCCGTCGCGGTCGACCGCGCTCGCGTCGGCGAGGGTCAGCCCGCTGGTCTCCGGCGCGAGGACGTATGACGCGGCCCAGCCGATGACGCAGATGACCGCGCCGAGGAGCATCGCCAGCCGGGTGCTGTGGGCGAGGACGACGGGCGCTCCCCAGGTGCCGAGTGCGGCGCCGATCCGGCTGATGCCGGTGGCGAAGCCGTTGGCGGTGGCGCGCACCCCGGTCGGGAAGAGCTCGGAGGGATAGATGGCCTGGAGGCACTGGCTGGAGAAGCACGCCACGCCGAAGGCCGCGAAGAGCACGACCACGACGGCCGGTGCGGGATGGGCGAAGGCGGCGAGGGCGAGCAGGGGGATGGCGGAGAGGCCGAAGCTCCACAGCAGCAGGGTGCGCCGCCCCTTGTTGACGACCAGGATCCCGGAGAGCGAGCCGAGCACGAAGAAGATCTGCACCACGACCGAGCCGAGGTACGAGTCGTTGCCGTCGGCCAGTCCGAAGGAGGCCAGGATGGTGGGTTCGTACGTGGTGATGGCGTAGATGGGCAGCAGCTGGCACGCCCAGAAGACGCTGATGAAGACGGTCCTGCGCAGATAGGCGCCGCGGAAGATGTCGCCGTAGCGGGTGCGCGAGGCGGTGTCCGCCTCCAGCTCGGCCAGGGTCGCGTCCGGGCCGAGCATCTGCTTCAGCACGGCCTCGGCCTCGTCGGTACGCCCCTTGCTGAGCAGCCAGCGCGGGGACTCGGGGGTGCCGAAGCGCAGCAGCAGGATGAGGACGGCGGGGATCGCGCTGCTCGCGAGCATCCAGCGCCAGTCGTCATGGCCGGAGGACATCATCGCCCAGCCGACGACGTACGCGACGGCGGCGCCGACCGACCACATCGTCACCATGATGACCAGCAGCGGACCCCGGGAGTTGCGGGGTGCGAACTCGGAGGCGATGGTGCCCGCGATGGCGAAGTCCGCGCCGATGGCGATGCCCATGAGGAAGCGCAGCACGGTGAGCTGCCAGGGATCGGTGACGAAGAACTGGGCCGCGGACAGCACGATGAAGGCTGCGATGTCGAAGAGATAGACCTTCTGCCGCCCGACCAGGTCGGTGACGTAACCGAAGATCAGACCGCCGGCGAACATGCCGACCAGGGACGCGGAGCCGACGACTCCGGCGTCGAAGGAGTTCAGGTGGTAGTCGGCGGTGAGGAGCGGCAGTGCGACGCCGATGATGCTGAGGATGTAGCCGTCGCAGAACTCGCCGCCGCCCGCGTAGAGCGTGATGAGCCAGTGGGTGCGGGTGGGACGGGACTTTTCGAGTGATGCTGTGCTCAT > 1115 SSAG_02952 NA sugar_transporter EDX23161.1 11 MTSTANAPASGGGSAARPDHLGHVIFIAAAAAMGGFLFGYDSSVINGAVVAIRERFDVGSAALAQVIAAALIGCAFGAATAGRIADRIGRIRCMQIAAALFTASAIGSALPFALWDLAMWRVVGGFGIGMASVIGPAYIAEVSPPAYRGRLASFQQAAIVIGIAVSQLVNWAILNLADGDQRGEIGGLEAWQWMLGVMVVPAVLYGLLSFVIPESPRFLVSVGRTEKAKEVLRDVEGSGIDADARVREIDRSMRSEHKSTFKDLLGGRFGFLPIVWIGIGLSVFQQLVGINVIFYYSSSLWQSVGIDPSASFLYSFETSVVNIVGTVIAMIFVDRIGRKPLALIGSVGMALSLGTAAWAFSFKTGTGDNISLPDTQGVVALVAANLFVLFFALSWGVVVWVLLGEMFPGRIRAAALGVAAAAQWIANWVITVSFPSLSDWNLSGAYMIYTFFALLSIPFILKWVPETKGKALEEMG high_GC_Gram+ Streptomyces_sp._Mg1 Streptomyces_sp._Mg1 DS570397 112061..113491 Fischbach,M.,_Ward,D.,_Young,S.,_Jaffe,D.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Mehta,T.,_Alvarado,L.,_Kodira,C.D.,_Straight,P.,_Clardy,J.,_Hung,D.,_Kolter,R.,_Mekalanos,J.,_Walker,S.,_Walsh,C.T.,_Lander,E.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1431 The_CDS_were_annotated_to_begin_and_end_with_complete_codons.Consequently,_incomplete_CDSs_were_not_extended_to_the_ends_of_thenucleotide_sequences.Annotation_was_added_to_the_scaffolds_in_July_2008. NA 18-JUL-2008 Streptomyces_sp._Mg1_supercont1.14_genomic_scaffold,_whole_genome_shotgun_sequence. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_sp_B4V5C4_9ACTO.gb Streptoverticillium_Baldacci_1958 169402089 Unpublished NA DS570397 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1431 NA genomic_DNA NA Mg1 NA Streptomyces_sp._Mg1 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 465541 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces Annotation_of_Streptomyces_sp._Mg1 NA DS570397.1 TTGACCAGCACAGCGAACGCACCCGCGTCGGGCGGTGGAAGCGCGGCCCGGCCCGACCACCTCGGCCACGTCATCTTCATCGCCGCGGCCGCTGCCATGGGCGGCTTCCTCTTCGGTTACGACAGCTCCGTCATCAACGGAGCCGTCGTCGCCATCCGCGAGCGCTTCGACGTCGGCTCGGCGGCACTCGCCCAGGTGATCGCCGCCGCCCTGATCGGCTGCGCCTTCGGCGCCGCCACCGCCGGCCGCATCGCCGACCGGATCGGCCGAATCCGCTGCATGCAGATCGCGGCCGCCCTGTTCACCGCGAGCGCCATCGGCTCCGCCCTCCCGTTCGCCCTCTGGGACCTCGCCATGTGGCGGGTCGTCGGCGGCTTCGGCATCGGCATGGCCTCGGTCATCGGCCCCGCCTACATCGCCGAGGTCTCCCCGCCCGCCTACCGCGGCCGGCTGGCCTCCTTCCAGCAGGCGGCCATCGTCATCGGCATCGCCGTCTCGCAGCTGGTCAACTGGGCCATCCTCAACCTCGCCGACGGCGACCAGCGCGGTGAGATCGGCGGCCTGGAAGCCTGGCAGTGGATGCTCGGCGTGATGGTCGTCCCGGCCGTGCTCTACGGCCTGCTGTCCTTCGTCATCCCCGAGTCCCCGCGCTTCCTCGTCTCGGTCGGCCGTACGGAGAAGGCCAAGGAGGTCCTGCGCGATGTGGAGGGCTCGGGCATCGACGCCGACGCCCGCGTCCGCGAGATCGACCGCTCCATGCGCTCCGAGCACAAGTCCACCTTCAAGGACCTGCTCGGCGGCCGTTTCGGCTTCCTGCCCATCGTCTGGATCGGCATCGGCCTCTCGGTCTTCCAGCAGCTGGTCGGCATCAACGTGATCTTCTACTACAGCTCCTCGCTGTGGCAGTCGGTCGGCATCGACCCGAGCGCCTCGTTCCTGTACTCCTTCGAGACCTCGGTCGTGAACATCGTCGGCACCGTGATCGCGATGATCTTCGTGGACCGGATCGGCCGCAAGCCGCTCGCCCTCATCGGCTCCGTCGGCATGGCGCTGTCCCTGGGTACGGCCGCCTGGGCCTTCTCCTTCAAGACCGGGACCGGCGACAACATCTCCCTGCCGGACACCCAGGGCGTCGTCGCCCTGGTCGCGGCCAACCTCTTCGTCCTCTTCTTCGCGCTCTCCTGGGGCGTGGTGGTCTGGGTGCTGCTCGGCGAGATGTTCCCCGGCCGCATCCGCGCCGCCGCCCTCGGTGTGGCCGCCGCCGCCCAGTGGATCGCCAACTGGGTCATCACCGTCTCGTTCCCGTCGCTCTCCGACTGGAACCTGTCGGGCGCCTACATGATCTACACGTTCTTCGCCCTGCTCTCGATCCCCTTCATCCTCAAGTGGGTGCCGGAGACCAAGGGCAAGGCGTTGGAGGAGATGGGGTAA > 1116 SACTEDRAFT_4717 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_bpy:Bphyt_2625_general_substrate_transporter General_substrate_transporter EFB65591.1 11 MAAPDPHQVADPEAVKRHPALFRAIRKRQNPRLRRTDITVTDDQAVKRAVKAASLGNAMEWFDFGIYSYLAVTIGHVFFPSGNDTTQLLSSFATFAVAFLVRPLGGMFFGPMGDKIGRKKVLALTMILMAVGTFAIGLIPSHDTIGVWAAVLLIAFRMLQGFSTGGEYGGASTFIAEYAPDKRRGFFGSFLEFGTLAGYVGAAGLVTALYALLDTAQMESWGWRIPFLVAGPLGLVGLYLRLKLDETPAFQKLEGGTAHATEAADHVESTAKGDLAKIFRQYWPTLILCIALVGAYNITDYMLLSYMPTYLSDELGYSETHGLLILLAVMVFLMVVISRFGKLSDRFGRKPLLMTGMLGFLFLSLPAFLLIRQGSIVAITIGMLMLGLSLVCMLGTMSAALPALFPTNVRYGSLSVGYNLSASIFGGTTPLVITALISWSGSNLMPAYYSMAAALIGVIAVACMKETANKPLAGSPPSVETAEEAAELVHAQSPDPKF high_GC_Gram+ Streptomyces_sp._SirexAA-E Streptomyces_sp._SirexAA-E ADFD01000014 130961..132457 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Larimer,F.,_Land,M.L.,_Hauser,L.,_Adams,A.,_Raffa,K.,_Adams,S._and_Currie,C. NA 0:1497 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4086644Source_DNA_and_Organism_available_from_Cameron_Currie(currie@bact.wisc.edu)Contacts:_Cameron_Currie_(currie@bact.wisc.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)This_WGS_project_has_been_superceded_by_the_complete_genome_in(non-WGS)_GenBank_record_CP002993.##Metadata-START##Organism_Display_Name_::_Streptomyces_sp._ACTEGOLD_Stamp_ID_::_Gi04382Oxygen_Requirement_::_AerobeCell_Shape_::_Filament-shapedMotility_::_NonmotileSporulation_::_SporulatingTemperature_Range_::_MesophileGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Soil##Metadata-END## NA 30-DEC-2009 Streptomyces_sp._SirexAA-E_strain_ACTE_ctg00014,_whole_genome_shotgun_sequence. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_sp_D1XPV7_9ACTO.gb Streptoverticillium_Baldacci_1958 282559917 Unpublished NA ADFD01000014 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1497 NA genomic_DNA NA ACTE NA Streptomyces_sp._SirexAA-E NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 862751 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces The_draft_genome_of_Streptomyces_sp._ACTE NA ADFD01000014.1 ATGGCGGCCCCCGACCCCCACCAGGTGGCCGACCCTGAAGCGGTCAAACGTCACCCCGCACTTTTCCGTGCGATCAGGAAGCGTCAGAACCCCCGGCTCCGTCGGACCGACATCACCGTCACCGACGACCAGGCGGTCAAGCGCGCGGTGAAGGCGGCGTCTCTCGGTAACGCCATGGAGTGGTTCGACTTCGGTATCTACTCCTACCTGGCCGTCACCATCGGTCACGTCTTCTTCCCGTCCGGGAACGACACGACCCAGCTCCTCTCCTCGTTCGCCACCTTCGCGGTCGCCTTCCTCGTACGGCCGTTGGGGGGAATGTTCTTCGGACCGATGGGCGACAAGATCGGCCGCAAGAAGGTCCTCGCCCTCACCATGATCCTGATGGCGGTCGGCACCTTCGCGATCGGCCTGATCCCCTCCCACGACACGATCGGCGTCTGGGCGGCCGTCCTGCTGATCGCCTTCCGCATGCTCCAGGGCTTCTCCACCGGCGGTGAGTACGGCGGCGCCTCCACCTTCATCGCCGAGTACGCCCCCGACAAGCGCCGCGGCTTCTTCGGCAGCTTCCTCGAATTCGGCACCCTCGCCGGCTACGTGGGCGCGGCCGGCCTCGTCACCGCCCTCTACGCCCTCCTGGACACCGCCCAGATGGAATCCTGGGGCTGGCGCATCCCCTTCCTGGTCGCGGGTCCGCTCGGCCTGGTCGGCCTCTACCTGCGGCTGAAGCTCGACGAGACCCCCGCCTTCCAGAAGCTGGAGGGCGGCACGGCGCACGCCACGGAGGCCGCCGACCACGTCGAGTCCACCGCCAAGGGCGACCTGGCCAAGATCTTCCGCCAGTACTGGCCGACGCTGATCCTCTGCATCGCCCTGGTCGGCGCGTACAACATCACCGACTACATGCTGCTGTCGTACATGCCGACGTACCTCTCCGACGAGCTCGGCTACAGCGAGACCCACGGGCTGCTCATCCTGCTCGCGGTCATGGTCTTCCTGATGGTGGTCATCAGCCGGTTCGGCAAGCTCTCGGACCGCTTCGGCCGCAAGCCGCTGCTGATGACGGGCATGCTCGGCTTCCTCTTCCTCTCGCTCCCGGCCTTCCTGCTGATCCGCCAGGGCAGCATCGTCGCGATCACGATCGGGATGCTGATGCTCGGCCTCTCCCTGGTCTGCATGCTGGGCACGATGTCCGCCGCGCTCCCGGCCCTGTTCCCGACCAACGTCCGCTACGGCTCCCTCTCGGTCGGCTACAACCTCTCCGCCTCGATCTTCGGCGGTACGACCCCGCTGGTGATCACGGCCCTGATCAGCTGGTCCGGCTCGAACCTGATGCCGGCGTACTACTCGATGGCGGCGGCCCTGATCGGCGTGATCGCGGTGGCCTGCATGAAGGAGACCGCCAACAAGCCCCTGGCCGGCTCCCCGCCCTCGGTGGAGACGGCCGAGGAGGCGGCAGAACTGGTCCACGCCCAGAGCCCGGACCCCAAGTTCTGA > 1117 SSMG_02593 NA sialic_acid-transport_integral_membrane_protein_NanT EFL06922.1 11 MTENAAGGKEKRKLNADQRNSFLAAWLGWSMDAFDYFLVVFVLTDIAKDKSFGATATQLAFITTATLVMRPVGALLFGLWADRSGRRIPLMADVLLYSLAGVLCAVAPNFTVLLILRFVYGIGMGGEWGLGAALAMEKIPVERRGFFSGLLQAGYSAGYLLAALAYLLFHTALGLEWRWIFVLSIFPALISLLIRARVKESEVWEAAQEKMRVTRTSVKDVLFNPKVLRRFGYLVLLMTAFNWMSHGTQDIYPSFLKATDHGGAGLSAATSTWIAVLYNVGAIIGGLVFGSLSERFGRRMTIVGAAVLGLPIIPIFAVDHGAGMLALGSFLMQVMVQGAWGVIPAHLTEMSPDAIRGFFPGVTYQLGNLLAALNLPLQQGIAQSQGYTAALLWTVIPVLIAVAVLTSLGKEAKSIRFGGEGATTAPAGTS high_GC_Gram+ Streptomyces_sp._AA4 Streptomyces_sp._AA4 GG657746 2805541..2806833 Fischbach,M.,_Godfrey,P.,_Ward,D.,_Young,S.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Bochicchio,J.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Straight,P.,_Clardy,J.,_Hung,D.,_Kolter,R.,_Mekalanos,J.,_Walker,S.,_Walsh,C.T.,_Wieland-Brown,L.C.,_Haas,B.,_Nusbaum,C._and_Birren,B. NA 0:1293 Annotation_was_added_to_the_scaffolds_in_August_2010.##Genome-Assembly-Data-START##Assembly_Method_::_Arachne_v._April_2007Genome_Coverage_::_10xSequencing_Technology_::_ABI##Genome-Assembly-Data-END## NA 10-AUG-2010 Streptomyces_sp._AA4_genomic_scaffold_supercont1.1,_whole_genome_shotgun_sequence. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_sp_D9V2M7_9ACTO.gb Streptoverticillium_Baldacci_1958 224461109 Unpublished NA GG657746 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1293 NA genomic_DNA NA AA4 NA Streptomyces_sp._AA4 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 591158 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces Annotation_of_Streptomyces_sp._strain_AA4 NA GG657746.1 GTGACCGAAAACGCAGCCGGGGGCAAGGAAAAACGCAAGCTCAACGCCGATCAGCGGAACTCGTTCCTCGCCGCGTGGCTCGGCTGGAGCATGGACGCGTTCGACTATTTCCTGGTCGTGTTCGTGCTCACGGACATCGCCAAGGACAAATCGTTCGGGGCCACGGCCACCCAGCTGGCGTTCATCACCACCGCGACGCTCGTCATGCGCCCGGTCGGCGCGCTGCTGTTCGGGCTGTGGGCGGACCGGTCCGGCCGACGGATCCCGCTGATGGCCGACGTCCTGCTGTACTCGCTGGCGGGGGTGTTGTGTGCGGTCGCGCCGAACTTCACCGTGCTGCTGATCCTGCGGTTCGTCTACGGCATCGGCATGGGCGGTGAATGGGGCCTGGGCGCGGCGCTCGCGATGGAGAAAATCCCGGTGGAGCGGCGCGGGTTCTTCTCGGGACTGCTGCAAGCGGGTTACTCGGCCGGATACCTGCTGGCCGCGCTGGCGTATCTGCTGTTCCACACCGCGCTCGGCCTGGAGTGGCGGTGGATCTTCGTGCTGAGCATCTTCCCGGCGCTGATCAGCCTGCTGATCCGGGCGCGGGTCAAGGAATCGGAGGTGTGGGAGGCCGCGCAGGAGAAGATGCGCGTCACGCGAACGTCGGTCAAGGACGTCCTGTTCAACCCGAAGGTCCTGCGCCGGTTCGGGTACCTCGTGCTGCTGATGACCGCGTTCAACTGGATGTCGCACGGCACGCAAGACATTTACCCGAGCTTCCTGAAGGCGACCGACCACGGCGGGGCCGGCCTGAGCGCGGCGACCAGCACGTGGATCGCCGTGCTGTACAACGTCGGCGCGATCATCGGCGGCCTGGTCTTCGGCTCGCTGTCGGAACGCTTCGGCCGCCGGATGACGATCGTCGGCGCCGCGGTGCTGGGCCTGCCGATCATCCCGATCTTCGCCGTCGACCACGGAGCCGGAATGCTCGCGCTCGGCTCGTTCCTGATGCAGGTCATGGTGCAGGGCGCGTGGGGCGTCATCCCCGCCCACCTCACGGAAATGTCCCCCGACGCGATCCGCGGCTTCTTCCCCGGCGTCACCTACCAGCTCGGCAACCTGCTGGCCGCACTGAACCTGCCGCTCCAGCAGGGCATCGCGCAGTCACAGGGCTACACCGCCGCGCTGCTGTGGACAGTGATCCCGGTGCTCATCGCGGTCGCCGTGCTGACCTCGCTGGGCAAGGAAGCGAAATCCATCCGCTTCGGCGGCGAAGGCGCGACCACCGCCCCAGCCGGAACCTCCTGA > 1118 NA NA putative_3-(2-hydroxyphenyl)_propionic_acid_transporter CAH10094.1 11 MVFTLILMGLSTFLIGCLPTRDQVGTLAPVLLVICRVLQGISAAGEQASANSMSLEHAPPNKRGFFTSFTLSGTQGGQLLATLVFIPVAALPEDQLLSWGWRVPFWMSIAVAVVGYVIRRTLEETPTFTQQAATEGVAKMPLAVLLRDHWADVLRVVAAALVASVSTIFTVWALSYATSDSVGMDRTSMLWVGALANLVALGAIPLWATLSDRIGRRPVFLIGAAGSGVLMVAYLWAISTGSYPLVMVLGIVTFGVVYSAANGVWPSFYGEMFSTRVRLSGMAIGTQIGFAIAGFAVTFAAQIAGPDGDDWASVALFTAALCVPPVIAALTARETHKVPTEHLGERAPQDSPNREPVSA high_GC_Gram+ Streptomyces_sp._SCC_2136 Streptomyces_sp._SCC_2136 AJ628018 4587..5666 Sthapit,B. NA 0:1080 NA NA 13-SEP-2010 Streptomyces_sp._SCC_2136_deoxysugar_biosynthetic_gene_cluster. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_sp_Q2HR43_9ACTO.gb Streptoverticillium_Baldacci_1958 88319755 Thesis_(2004)_Department_of_Chemistry,_SunMoon_University,_Asan,_South_Korea NA AJ628018 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1080 NA genomic_DNA NA SCC_2136_=_ATCC_55186 NA Streptomyces_sp._SCC-2136 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 264024 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces Molecular_cloning_and_characterization_of_biosynthetic_genes_cluster_of_Sch_47554_from_Streptomyces_sp._SCC_2136 NA AJ628018.2 TCAGGCCGAGACCGGCTCTCGGTTCGGGGAGTCCTGGGGTGCCCGCTCGCCGAGGTGTTCCGTCGGGACCTTGTGGGTTTCGCGGGCCGTGAGCGCCGCGATCACCGGCGGGACGCACAGCGCCGCGGTGAACAGCGCCACCGACGCCCAGTCGTCCCCGTCCGGACCCGCGATCTGCGCGGCGAAGGTCACCGCGAACCCGGCGATGGCGAAGCCGATCTGCGTGCCGATGGCCATGCCCGAGAGGCGGACCCGAGTGGAGAACATCTCGCCGTAGAAGGACGGCCAGACACCGTTCGCGGCGCTGTAGACGACACCGAAGGTGACGATGCCGAGGACCATGACCAGCGGGTAGGAGCCCGTGGAGATGGCCCACAGGTAGGCGACCATCAGCACGCCACTGCCCGCGGCGCCGATCAGGAAGACGGGCCGGCGGCCGATGCGGTCGGAGAGGGTTGCCCAGAGGGGGATGGCGCCCAGGGCGACCAGGTTGGCGAGCGCACCCACCCACAGCATGGACGTACGGTCCATGCCGACGGAGTCGCTGGTGGCGTACGACAGCGCCCACACCGTGAAGATCGTGCTGACCGAGGCGACGAGCGCGGCCGCGACCACCCTGAGGACGTCCGCCCAGTGGTCCCGCAGCAGCACGGCGAGCGGCATCTTCGCGACGCCCTCGGTGGCGGCCTGCTGGGTGAAGGTCGGGGTCTCCTCCAGCGTGCGGCGGATGACGTAGCCGACGACGGCGACCGCGATGCTCATCCAGAACGGGACCCGCCAGCCCCAGGAGAGGAGTTGGTCCTCGGGGAGCGCGGCGACCGGGATGAACACCAGCGTGGCGAGGAGCTGGCCGCCCTGCGTGCCGCTGAGCGTGAAGCTGGTGAAGAAGCCGCGTTTGTTGGGTGGCGCGTGTTCCAGTGACATGGAGTTGGCGCTGGCCTGCTCGCCGGCGGCCGAGATGCCCTGCAGGACACGGCAGATCACCAGGAGCACCGGGGCCAGCGTGCCGACCTGGTCGCGCGTCGGCAGACAGCCGATGAGGAACGTCGAGAGGCCCATCAGGATCAGCGTGAAGACCAT > 1119 StrviDRAFT_3246 PFAM:_General_substrate_transporter;_KEGG:_rxy:Rxyl_2344_major_facilitator_transporter General_substrate_transporter EFN19019.1 11 MSHIPVTDTATDARAGQSPVAPRAASAIRRTALAGMIGTTIEWYDFYIYGLAAALVFGTEFFPDFSPAAGTLAAFATFAVGFIARPLGGVIFGHFGDRVGRKNALMLTLFLMGAATVIVGLLPGFQTIGIWAPILLVTLRFLQGFAVGGEWGGAVTMVVESSPRDRRGFYGSLPQMGVPLGLVLSSTVFAAVSTLPDDDLLAWGWRIPFLLSIVLIAVGLFLRSRITETQTFVQVKASGRARKMPAMEAFRHHGKAIALTVGMYVSAGVPFYIVSVFVLSYGSSHLGLSRSVLLTGMLIAAVAEALTVPCFGALSDRWGRRPVFLSAAAFTAVLAFPFFWLLATGQTGLAWLAMLLALAVAHAGMYAPTAALYAELFPANVRYTGTSIGYQLGGVVAGFVPLVAGALVNAADGASWPIAAIWAGAALIGLVCALIVRESRGRDLHPHHDT high_GC_Gram+ Streptomyces_violaceusniger_Tu_4113 Streptomyces_violaceusniger_Tu_4113 AEDI01000015 90337..91689 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Land,M.L.,_Hauser,L.,_Chang,Y.-J.,_Jeffries,C.,_Hagen,A.,_Katz,L.,_Fiedler,H.-P.,_Keasling,J.,_Fortman,J.L._and_Woyke,T.J. NA 0:1353 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4087618Source_DNA_and_Organism_available_from_Jeffrey_L._Fortman(jlfortman@lbl.gov)Contacts:_Jeffrey_L._Fortman_(jlfortman@lbl.gov)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)This_WGS_project_has_been_superceded_by_the_complete_genome_in(non-WGS)_GenBank_records_CP002994-CP002996.##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Streptomyces_violaceusniger_Tu_4113collection_date_::_Missinglat_lon_::_Missingdepth_::_Missingalt_elev_::_Missingcountry_::_Missingenvironment_::_Soilnum_replicons_::_Missingref_biomaterial_::_Missingbiotic_relationship_::_Free_livingtrophic_level_::_Missingrel_to_oxygen_::_Aerobeisol_growth_condt_::_Missingsequencing_meth_::_WGSassembly_::_Newbler_v._2.3finishing_strategy_::_Missing##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_60xSequencing_Technology_::_454/Illumina##Genome-Assembly-Data-END####Metadata-START##GOLD_Stamp_ID_::_Gi06639Funding_Program_::_DOE-CSP_2010rel_to_oxygen_::_AerobeCell_Shape_::_Filament-shapedMotility_::_NonmotileSporulation_::_SporulatingTemperature_Range_::_MesophileGram_Staining_::_Gram+Diseases_::_None##Metadata-END## NA 13-SEP-2010 Streptomyces_violaceusniger_Tu_4113_ctg00089,_whole_genome_shotgun_sequence. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_violaceusniger_E0KKL0_STRVO.gb Streptoverticillium_Baldacci_1958 306887938 Unpublished NA AEDI01000015 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1353 NA genomic_DNA NA Tu_4113 NA Streptomyces_violaceusniger_(Waksman_and_Curtis_1916)_Pridham_et_al._1958_(Approved_Lists_1980)_emend._Labeda_and_Lyons_1991 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 653045 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces The_draft_genome_of_Streptomyces_violaceusniger_Tu_4113 NA AEDI01000015.1 ATGAGCCATATTCCCGTCACCGACACAGCAACCGACGCCAGAGCCGGCCAGTCCCCCGTGGCTCCCCGGGCCGCCTCCGCCATCCGCCGAACGGCCCTGGCGGGCATGATCGGCACCACGATCGAGTGGTACGACTTCTACATCTACGGCCTCGCCGCGGCACTGGTCTTCGGCACGGAGTTCTTTCCCGACTTCTCACCGGCGGCCGGCACGCTGGCCGCGTTCGCCACCTTCGCGGTCGGCTTCATCGCCCGCCCGCTCGGCGGAGTGATCTTCGGTCACTTCGGGGACCGCGTGGGGCGCAAGAACGCGCTCATGCTCACGCTGTTCCTGATGGGCGCGGCGACCGTCATCGTCGGCCTGCTGCCGGGCTTCCAGACCATCGGCATCTGGGCGCCCATCCTGCTGGTCACGCTGCGCTTCCTCCAGGGCTTCGCGGTCGGCGGTGAGTGGGGCGGCGCGGTGACCATGGTCGTGGAGTCCTCGCCACGGGACCGGCGCGGCTTCTACGGGAGCCTGCCGCAGATGGGTGTGCCGCTGGGGCTGGTGCTCTCGTCGACCGTGTTCGCGGCGGTCTCCACGCTGCCCGATGACGACCTCCTCGCCTGGGGCTGGCGCATCCCCTTCCTGCTCAGCATCGTGCTGATCGCGGTCGGACTGTTCCTCCGTTCGCGCATCACCGAGACACAGACGTTCGTCCAGGTGAAGGCGTCGGGGCGGGCGCGCAAGATGCCGGCCATGGAGGCGTTCCGCCACCACGGGAAGGCGATCGCCCTCACCGTCGGCATGTATGTCTCGGCCGGTGTCCCCTTCTACATCGTCTCGGTTTTCGTGCTGTCCTACGGCTCATCCCACCTTGGTCTCTCGCGGAGTGTGCTGCTGACCGGGATGCTCATCGCGGCGGTGGCCGAGGCGCTGACGGTGCCCTGCTTCGGCGCGCTGTCGGACCGATGGGGCCGGCGGCCCGTGTTCCTGAGCGCCGCCGCGTTCACGGCCGTTCTCGCCTTCCCGTTCTTCTGGCTGCTGGCGACCGGGCAGACGGGGCTCGCCTGGCTGGCCATGCTGCTCGCGCTCGCCGTGGCGCACGCGGGGATGTACGCGCCCACCGCGGCGCTGTACGCGGAACTGTTCCCCGCGAACGTCCGGTACACCGGTACGTCGATCGGCTATCAACTCGGCGGTGTCGTGGCCGGGTTCGTGCCGCTCGTGGCGGGCGCACTCGTCAACGCGGCCGACGGCGCCTCGTGGCCGATCGCCGCCATCTGGGCGGGAGCGGCACTGATCGGGCTGGTCTGCGCGCTGATCGTCCGGGAATCCCGGGGCCGCGATCTGCACCCCCACCACGACACCTGA > 1120 StrviDRAFT_6854 KEGG:_sco:SCO7153_sugar_transporter;_TIGRFAM:_sugar_transporter;_PFAM:_General_substrate_transporter sugar_transporter EFN15314.1 11 MSTTVQAEGAEGRKAQPDHLGHVIFITAAAAMGGFLFGYDSSVINGAVEAIRGKYDIGSAALAQVVAIALIGSAIGAATAGRIADRIGRIRVMQIAAALFTISAVGSALPFSLWDLAMWRVLGGIGIGMASVIGPAYIAEVAPPAYRGRLASFQQAAIVVGIAISQLVNWGILNFADGDQRGKVAGLEAWQWMLGVMVIPAVLYGLLSFAIPESPRFLISAGRTEQAKQVLEEVEGKTVDLDVRVAEIDRAMRSEEKSTFKDLLGGRFGLLPIVWIGIGLSVFQQLVGINVAFYYSSTLWQSVGVDPSSSFFYSFTTSIINILGTVIAMIFVDRVGRRPLALIGSVGMAVSLGLVAWAFSAHLVDGKLPHAQGVLALIAAHAFVLFFALSWGVVVWVLLGEMFPNKIRAAALGVAASAQWIANWAITASFPSLSEWNLSATYVMYTAFALLSIPFILKWVPETKGKALEEMG high_GC_Gram+ Streptomyces_violaceusniger_Tu_4113 Streptomyces_violaceusniger_Tu_4113 AEDI01000060 2758..4176 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Land,M.L.,_Hauser,L.,_Chang,Y.-J.,_Jeffries,C.,_Hagen,A.,_Katz,L.,_Fiedler,H.-P.,_Keasling,J.,_Fortman,J.L._and_Woyke,T.J. NA 0:1419 URL_--_http://www.jgi.doe.govJGI_Project_ID:_4087618Source_DNA_and_Organism_available_from_Jeffrey_L._Fortman(jlfortman@lbl.gov)Contacts:_Jeffrey_L._Fortman_(jlfortman@lbl.gov)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)This_WGS_project_has_been_superceded_by_the_complete_genome_in(non-WGS)_GenBank_records_CP002994-CP002996.##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Streptomyces_violaceusniger_Tu_4113collection_date_::_Missinglat_lon_::_Missingdepth_::_Missingalt_elev_::_Missingcountry_::_Missingenvironment_::_Soilnum_replicons_::_Missingref_biomaterial_::_Missingbiotic_relationship_::_Free_livingtrophic_level_::_Missingrel_to_oxygen_::_Aerobeisol_growth_condt_::_Missingsequencing_meth_::_WGSassembly_::_Newbler_v._2.3finishing_strategy_::_Missing##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_High-Quality_DraftAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_60xSequencing_Technology_::_454/Illumina##Genome-Assembly-Data-END####Metadata-START##GOLD_Stamp_ID_::_Gi06639Funding_Program_::_DOE-CSP_2010rel_to_oxygen_::_AerobeCell_Shape_::_Filament-shapedMotility_::_NonmotileSporulation_::_SporulatingTemperature_Range_::_MesophileGram_Staining_::_Gram+Diseases_::_None##Metadata-END## NA 13-SEP-2010 Streptomyces_violaceusniger_Tu_4113_ctg00209,_whole_genome_shotgun_sequence. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_violaceusniger_E0KW26_STRVO.gb Streptoverticillium_Baldacci_1958 306884277 Unpublished NA AEDI01000060 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1419 NA genomic_DNA NA Tu_4113 NA Streptomyces_violaceusniger_(Waksman_and_Curtis_1916)_Pridham_et_al._1958_(Approved_Lists_1980)_emend._Labeda_and_Lyons_1991 NA forward Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 653045 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces The_draft_genome_of_Streptomyces_violaceusniger_Tu_4113 NA AEDI01000060.1 TTGTCCACCACCGTGCAGGCAGAGGGAGCCGAGGGCCGCAAGGCCCAGCCGGATCACCTCGGCCATGTCATCTTCATCACCGCCGCCGCCGCGATGGGTGGCTTTCTCTTCGGCTACGACAGCTCGGTGATCAACGGAGCGGTCGAAGCCATCCGGGGCAAGTACGACATCGGCTCCGCGGCCCTCGCCCAGGTCGTGGCCATCGCCCTGATCGGCTCGGCCATCGGGGCCGCCACCGCGGGCCGGATAGCCGACCGGATCGGCCGGATCCGCGTCATGCAGATCGCCGCCGCCCTCTTCACGATCAGCGCGGTCGGCTCGGCGCTGCCCTTCTCGCTGTGGGACCTGGCGATGTGGCGGGTGCTCGGCGGTATCGGCATCGGCATGGCCTCGGTGATCGGCCCGGCCTACATCGCCGAGGTCGCCCCGCCCGCCTACCGTGGCCGGCTCGCCTCGTTCCAGCAGGCCGCGATCGTCGTCGGCATCGCCATCTCCCAGCTCGTCAACTGGGGCATCCTCAACTTCGCCGACGGCGACCAGCGCGGAAAGGTCGCCGGCCTGGAGGCCTGGCAGTGGATGCTCGGCGTCATGGTCATCCCCGCCGTCCTCTACGGGCTGCTGTCCTTCGCCATCCCCGAGTCGCCCCGCTTCCTGATCTCCGCCGGCCGGACCGAGCAGGCCAAGCAGGTCCTCGAAGAGGTCGAGGGCAAGACCGTGGACCTCGATGTGCGGGTCGCCGAGATCGACCGGGCCATGCGCAGTGAGGAGAAGTCCACCTTCAAGGACCTCCTCGGCGGCCGGTTCGGTCTGCTGCCCATCGTCTGGATCGGCATCGGGCTCTCGGTCTTCCAGCAGCTCGTCGGCATCAACGTGGCGTTCTACTACTCCTCGACGCTGTGGCAGTCCGTCGGCGTCGACCCGAGCAGCTCGTTCTTCTACTCCTTCACCACGTCGATCATCAACATCCTCGGCACCGTGATCGCGATGATCTTCGTCGACCGGGTCGGCCGCAGGCCGCTCGCGCTCATCGGCTCCGTGGGCATGGCCGTCTCCCTCGGTCTGGTGGCCTGGGCCTTCTCGGCCCACCTGGTGGACGGCAAGCTGCCGCACGCCCAGGGCGTCCTCGCGCTGATCGCGGCCCACGCCTTCGTGCTCTTCTTCGCCCTCTCGTGGGGCGTGGTGGTCTGGGTCCTGCTCGGCGAGATGTTCCCGAACAAGATCCGCGCCGCGGCCCTCGGTGTCGCCGCCTCCGCCCAGTGGATCGCCAACTGGGCCATCACCGCCAGCTTCCCGAGCCTGTCGGAGTGGAACCTGTCGGCCACGTACGTCATGTACACAGCCTTCGCCCTGCTCTCGATCCCCTTCATCCTCAAGTGGGTGCCGGAGACCAAGGGCAAGGCGTTGGAGGAGATGGGCTAA > 1121 SSQG_01595 NA metabolite_transporter EFL31077.1 11 MDTAPSAQPVTTAPAVGNRRRVATAAALASAVEWYDYFVFGIAAALVLGDLYFPAGSSTAGVLASFATFAVGFLARPLGGIVAGHLGDKRGRKPMLVLALTLMGVSTTAIGLLPTYDTIGVAAPILLVLLRVAQGVAVGAQWGGAMLLATEYAPEGKRGVYGSVVQLGVPIGVVTANTVFLLAGALTTDSAFAAWGWRVPFLVGLLVLALAWYIHTRVEETPAFREAERALAEQEKTEQSSPLRTILRGHLGTVLLAGGSFAVNTATFYILITGVLDYTTRELDMKKGPVLLVSLCVSLTQLVLIPAAAALSDRVGRIRIYAVGAVGIALWAVPLFLLIDTGSLLWLAVGTFVASCFLSIMYGPQAALFAELFTPEMRYTGASLGYQIAAVAGGGLAPFVMVLLLEATGTSMAVSGYIIALSVIALASIKVLAGRASATESEAAAPEAAPKSESESESAAGSAG high_GC_Gram+ Streptomyces_viridochromogenes_DSM_40736 Streptomyces_viridochromogenes_DSM_40736 GG657757 1795914..1797308 Fischbach,M.,_Godfrey,P.,_Ward,D.,_Young,S.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Bochicchio,J.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Straight,P.,_Clardy,J.,_Hung,D.,_Kolter,R.,_Mekalanos,J.,_Walker,S.,_Walsh,C.T.,_Wieland-Brown,L.C.,_Haas,B.,_Nusbaum,C._and_Birren,B. NA 0:1395 Annotation_was_added_to_the_scaffolds_in_August_2010.##Genome-Assembly-Data-START##Assembly_Method_::_Arachne_v._April_2007Genome_Coverage_::_8xSequencing_Technology_::_ABI##Genome-Assembly-Data-END## NA 10-AUG-2010 Streptomyces_viridochromogenes_DSM_40736_genomic_scaffold_supercont1.1,_whole_genome_shotgun_sequence. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_viridochromogenes_D9WYI3_STRVR.gb Streptoverticillium_Baldacci_1958 224461117 Unpublished NA GG657757 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1395 NA genomic_DNA NA DSM_40736 NA Streptomyces_viridochromogenes_(Krainsky_1914)_Waksman_and_Henrici_1948 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 591159 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces Annotation_of_Streptomyces_viridochromogenes_strain_DSM_40736 NA GG657757.1 TCAGCCCGCTGACCCGGCGGCGGACTCGGACTCGGACTCGGACTTCGGGGCGGCCTCCGGCGCCGCCGCCTCGGACTCCGTGGCACTCGCCCGGCCCGCGAGGACCTTGATCGAGGCCAGTGCGATCACCGAGAGCGCGATGATGTAGCCGGACACGGCCATCGACGTGCCCGTCGCCTCCAGCAACAGCACCATGACGAAGGGCGCGAGGCCGCCGCCGGCGACGGCCGCGATCTGGTAGCCGAGGGAGGCGCCGGTGTAGCGCATCTCGGGCGTGAACAGCTCGGCGAACAGGGCGGCCTGGGGGCCGTACATGATGCTCAGGAAGCAGCTGGCGACGAACGTGCCGACCGCGAGCCACAGCAGCGAGCCGGTGTCGATCAGCAGGAAGAGCGGTACGGCCCACAACGCGATGCCGACGGCGCCGACGGCGTAGATCCGGATGCGGCCGACGCGGTCGGAGAGTGCGGCGGCGGCCGGGATCAGCACGAGCTGGGTGAGGCTGACGCAGAGCGAGACGAGGAGCACCGGGCCCTTCTTCATGTCCAGCTCACGGGTCGTGTAGTCGAGGACGCCGGTGATGAGGATGTAGAAGGTCGCGGTGTTCACGGCGAAGGAGCCGCCCGCGAGGAGCACCGTGCCGAGGTGTCCGCGCAGGATGGTGCGCAGCGGCGAGCTCTGCTCGGTCTTCTCCTGCTCGGCGAGGGCGCGTTCGGCCTCCCGGAACGCCGGGGTCTCCTCGACGCGGGTGTGGATGTACCAGGCGAGGGCGAGCACGAGCAGGCCGACCAGGAACGGCACCCGCCAACCCCAGGCGGCGAACGCCGAGTCGGTGGTGAGCGCGCCGGCCAGCAGGAAGACGGTGTTCGCGGTGACCACGCCGATGGGGACGCCGAGCTGGACGACACTGCCGTACACACCGCGCTTGCCCTCCGGAGCGTACTCGGTGGCCAGGAGCATCGCGCCGCCCCACTGGGCGCCGACGGCGACGCCCTGGGCGACGCGGAGCAGGACCAGCAGGATCGGGGCGGCGACGCCGATGGTGTCGTACGTGGGGAGCAGGCCGATGGCGGTGGTGGAGACGCCCATGAGGGTGAGGGCGAGGACCAGCATCGGCTTGCGGCCGCGCTTGTCGCCGAGGTGCCCGGCGACGATGCCGCCGAGGGGCCGGGCGAGGAAGCCGACGGCGAAGGTGGCGAACGAGGCCAGGACGCCGGCGGTGGAACTGCCCGCGGGGAAGTAGAGATCGCCGAGGACCAGGGCGGCGGCGATGCCGAAGACGAAGTAGTCGTACCACTCGACGGCCGAGGCGAGCGCTGCCGCGGTGGCTACCCGGCGGCGGTTGCCCACGGCGGGCGCGGTGGTGACGGGCTGAGCGGAAGGTGCCGTGTCCAT > 1122 SSQG_06612 NA 3-(2-hydroxyphenyl)_propionic_acid_transporter EFL36094.1 11 MSVPATPRGAAAPPGQPRKAATAAWVGSALEYYDFFIYGSAAALIFPEVFFDESDPATATLLSLATFGVAYAARPVGALVLGHFGDKLGRKKIMVFTLMLMGLSTFLIGCLPTRAQVGTLAPVLLVLCRVLQGISAAGEQASANSMTLEHAPPGRRGFFTSFTLSGTQGGQLLATLVFIPVAALPEEQLLSWGWRVPFWLSVAVAVVGYVIRRKLDETPAFAQQAAEEGVVKLPLVVLLREHWADVLRVIAGALIASVSTIFTVWALAYATSDAVGMSRTAMLWVGALANVVALAAIPLWATLADRIGRRPVFLVGAAGSAVTMFLYLWAVSTGSYPLTFLTGVLCFGVVYSAANGVWPAFYGEMFRTRVRLSGVAIGTQIGFAAAGFAVTFAAQIAGPDGDDWSAVALFTAALCVPPVIAALSARETHRVPTERLGVRATREAGQPEKVTA high_GC_Gram+ Streptomyces_viridochromogenes_DSM_40736 Streptomyces_viridochromogenes_DSM_40736 GG657757 7456990..7458348 Fischbach,M.,_Godfrey,P.,_Ward,D.,_Young,S.,_Zeng,Q.,_Koehrsen,M.,_Alvarado,L.,_Berlin,A.M.,_Bochicchio,J.,_Borenstein,D.,_Chapman,S.B.,_Chen,Z.,_Engels,R.,_Freedman,E.,_Gellesch,M.,_Goldberg,J.,_Griggs,A.,_Gujja,S.,_Heilman,E.R.,_Heiman,D.I.,_Hepburn,T.A.,_Howarth,C.,_Jen,D.,_Larson,L.,_Lewis,B.,_Mehta,T.,_Park,D.,_Pearson,M.,_Richards,J.,_Roberts,A.,_Saif,S.,_Shea,T.D.,_Shenoy,N.,_Sisk,P.,_Stolte,C.,_Sykes,S.N.,_Thomson,T.,_Walk,T.,_White,J.,_Yandava,C.,_Straight,P.,_Clardy,J.,_Hung,D.,_Kolter,R.,_Mekalanos,J.,_Walker,S.,_Walsh,C.T.,_Wieland-Brown,L.C.,_Haas,B.,_Nusbaum,C._and_Birren,B. NA 0:1359 Annotation_was_added_to_the_scaffolds_in_August_2010.##Genome-Assembly-Data-START##Assembly_Method_::_Arachne_v._April_2007Genome_Coverage_::_8xSequencing_Technology_::_ABI##Genome-Assembly-Data-END## NA 10-AUG-2010 Streptomyces_viridochromogenes_DSM_40736_genomic_scaffold_supercont1.1,_whole_genome_shotgun_sequence. NA Streptomycetaceae_Waksman_and_Henrici_1943_(Approved_Lists_1980)_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Streptomyces_viridochromogenes_D9X5W3_STRVR.gb Streptoverticillium_Baldacci_1958 224461117 Unpublished NA GG657757 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 NA 1359 NA genomic_DNA NA DSM_40736 NA Streptomyces_viridochromogenes_(Krainsky_1914)_Waksman_and_Henrici_1948 NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Streptomycineae_Rainey_et_al._1997_emend._Zhi_et_al._2009 NA NA NA NA NA prokaryotes NA 591159 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Streptomycineae,_Streptomycetaceae,_Streptomyces Annotation_of_Streptomyces_viridochromogenes_strain_DSM_40736 NA GG657757.1 TCAGGCGGTCACCTTCTCCGGCTGACCGGCCTCCCGGGTCGCGCGCACCCCGAGCCGCTCCGTCGGAACCCGATGCGTCTCACGGGCTGACAGTGCGGCGATGACCGGCGGCACGCACAGTGCCGCCGTGAACAGGGCCACCGCCGACCAGTCGTCGCCGTCCGGGCCGGCGATCTGCGCGGCGAACGTCACCGCGAAGCCGGCCGCCGCGAAACCGATCTGTGTGCCGATGGCCACCCCGGACAGCCGCACCCGGGTCCTGAACATCTCACCGTAGAAGGCCGGCCACACGCCGTTCGCGGCGCTGTAGACCACGCCGAAGCAGAGGACGCCGGTCAGGAAGGTCAGCGGGTAGGAGCCGGTGGAGACCGCCCAGAGGTAGAGGAACATCGTCACCGCGCTGCCGGCCGCGCCGACCAGGAACACCGGGCGGCGGCCGATCCGGTCGGCCAGCGTGGCCCACAGCGGGATCGCGGCGAGTGCGACGACGTTGGCCAGGGCCCCCACCCACAGCATGGCGGTGCGGGACATGCCGACCGCGTCGCTCGTGGCGTACGCCAGCGCCCACACCGTGAAGATCGTGCTGACCGAGGCGATGAGCGCGCCCGCGATCACCCGCAGCACGTCCGCCCAGTGCTCGCGCAGCAGCACCACGAGCGGCAGCTTGACGACCCCCTCCTCGGCGGCCTGCTGGGCGAAGGCCGGGGTCTCGTCCAGCTTGCGGCGGATGACGTAGCCGACGACGGCGACCGCGACGCTCAGCCAGAACGGCACCCGCCAGCCCCAGGACAGCAACTGCTCCTCGGGCAGCGCGGCGACCGGGATGAAGACCAGGGTGGCCAGCAGCTGGCCGCCCTGTGTGCCGCTGAGGGTGAAGCTGGTGAAGAAGCCGCGCCGGCCCGGCGGCGCGTGCTCCAGCGTCATGGAGTTGGCGCTGGCCTGCTCACCCGCCGCCGAGATGCCCTGGAGCACCCGGCACAGCACCAGCAGGACCGGCGCGAGGGTGCCGACCTGGGCCCGGGTCGGCAGACAGCCGATGAGGAACGTCGACAGGCCCATCAGCATCAGCGTGAAGACCATGATCTTCTTGCGGCCGAGCTTGTCCCCGAAGTGCCCGAGGACCAGCGCGCCGACCGGACGGGCGGCGTACGCGACGCCGAACGTGGCCAGCGACAGCAGGGTCGCCGTGGCCGGGTCGGACTCGTCGAAGAACACCTCGGGGAAGATCAGCGCCGCGGCGCTGCCGTAGATGAAGAAGTCGTAGTACTCCAGCGCGCTGCCGACCCAGGCGGCGGTCGCGGCTTTTCTGGGCTGACCGGGCGGGGCGGCGGCCCCTCGGGGCGTGGCGGGGACGGACAC > 1123 Saci_1943 NA sugar_proton_symporter YP_256539.1 11 MSSALQEILDKIDRSRVTRLYWIITVLAAIGGFLFGYDTSVIGTVAVFVPYNFTGFLLGYEIASASLGAAIGALIGYFSTDRYGRKSLLIVDAGIYTGAAILTALSVNDIMFLVMRTIIGIAIGADSAVATSYITEYAPKDRRGSLAIMQQWMITIGILGSYLVGSAVLYIAPSLAYTVDWRLLLALAAIPSLIGLVLRFMMPESPRWLLVSGKKEKLKSDLRRLGLQIDDSLLDRAASEVRSEVRQSFDIATKRAFTIVALWIIFQQITGINVPFYYGPTIIENLHLFSSTSNPMYSQINSVLASSILAVINTAATYIAFRYIDRIGRRKLALSAYTGMLIFDLIGGILVMQGVLVGALIAFAGFIIFFAYGVGGTGWLIQAEYFDTPVRGRMAAIIALIDWLANFIIIEVFPVMLSTIGLAGSMFVFTALDAIALGLFYKLLPETKGLSLETIVKTFRETPLTRVVSEFNSITKGEEIKVKDK Thermoprotei_Reysenbach_2002 Sulfolobus_acidocaldarius_DSM_639 Sulfolobus_acidocaldarius_DSM_639 NC_007181 1755149..1756606 Chen,L.,_Brugger,K.,_Skovgaard,M.,_Redder,P.,_She,Q.,_Torarinsson,E.,_Greve,B.,_Awayez,M.,_Zibat,A.,_Klenk,H.-P._and_Garrett,R.A. NA 0:1458 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000077.COMPLETENESS:_full_length. NA 24-JAN-2012 Sulfolobus_acidocaldarius_DSM_639_chromosome,_complete_genome. NA Sulfolobaceae_Stetter_1989 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sulfolobus_acidocaldarius_Q4J7I5_SULAC.gb Sulfolobus_Brock_et_al._1972 70605853 J._Bacteriol._187_(14),_4992-4999_(2005) NA NC_007181 NA NA Sulfolobales_Stetter_1989 not_Crenarchaeota_Cavalier-Smith_2002 15995215 1458 NA genomic_DNA NA DSM_639 NA Sulfolobus_acidocaldarius_Brock_et_al._1972 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 330779 Archaea,_Crenarchaeota,_Thermoprotei,_Sulfolobales,_Sulfolobaceae,_Sulfolobus The_genome_of_Sulfolobus_acidocaldarius,_a_model_organism_of_the_Crenarchaeota NA NC_007181.1 TTACTTGTCCTTAACCTTTATCTCTTCTCCCTTAGTTATTGAGTTAAACTCTGAGACCACTCTGGTAAGTGGAGTCTCCCTGAACGTTTTAACTATAGTCTCTAGGGATAGACCCTTAGTCTCGGGGAGTAACTTGTAGAAGAGACCTAAAGCTATGGCATCAAGAGCAGTAAACACAAACATGGAGCCTGCTAAACCTATTGTAGAGAGCATAACTGGAAACACCTCAATTATGATGAAGTTCGCCAGCCAGTCTATTAACGCTATTATTGCAGCCATCCTCCCCCTAACAGGAGTGTCAAAATACTCAGCCTGGATTAACCACCCTGTACCTCCAACGCCATAGGCGAAGAATATTATGAAACCTGCAAATGCTATCAATGCACCTACCAAGACACCCTGCATTACTAAAATACCACCAATGAGGTCAAATATTAACATACCAGTATAGGCAGAGAGGGCTAACTTTCTCCTACCTATCCTGTCTATATACCTAAAGGCAATGTATGTCGCTGCAGTGTTTATGACAGCCAGAATTGAGGAAGCCAAAACTGAATTGATCTGGGAGTACATAGGGTTTGAGGTGGAACTGAACAGGTGCAGGTTCTCGATTATGGTCGGACCGTAGTAGAATGGCACATTTATACCTGTGATCTGTTGGAAAATTATCCACAGGGCTACGATAGTAAATGCCCTCTTAGTCGCTATATCAAAACTTTGTCTAACTTCACTCCTGACCTCTGAGGCTGCCCTGTCCAATAGACTGTCATCAATTTGTAGACCGAGCCTCCTCAGATCACTCTTCAACTTCTCCTTCTTACCTGAGACCAGCAACCACCTCGGTGACTCTGGCATCATAAACCTCAACACTAAGCCTATTAATGAGGGGATTGCTGCTAAAGCCAGGAGTAATCTCCAGTCCACAGTGTAAGCTAGAGAGGGAGCGATGTAAAGTACAGCTGAGCCCACTAGGTATGAGCCAAGTATACCGATTGTTATCATCCACTGTTGCATAATTGCTAGAGAGCCCCTCCTATCTTTAGGGGCATATTCCGTTATGTAAGAAGTCGCTACTGCTGAGTCAGCACCTATTGCGATTCCAATAATTGTCCTCATCACCAAAAACATTATATCGTTTACGCTCAGAGCGGTCAGTATGGCTGCACCTGTGTAGATACCTGCGTCTACGATGAGGAGGGATTTCCTCCCATATCTGTCTGTAGAGAAATAGCCTATAAGTGCACCGATGGCTGCTCCTAAAGACGCACTTGCTATCTCATAGCCCAAAAGGAAACCAGTGAAGTTGTAGGGGACAAACACTGCTACAGTGCCTATGACTGAGGTGTCATAGCCGAAAAGAAATCCCCCTATAGCAGCTAGAACAGTTATGATCCAGTACAGTCTCGTCACTCTACTTCTATCAATTTTATCTAAGATCTCCTGGAGTGCAGAGGACAT > 1124 Saci_0886 NA inorganic_phosphate_transporter YP_255544.1 11 MSNNPFKGIDNTKLNWNHIKIWYTAGMGFFTDAYDLLIISYILAVMIDAYKYYGFNMAGFTEYLIGNQATFWTGLLASSAIWTAIIGQLVFGYIGDRLGRKKVYGVEASLLTAGALLSALSPNLPLLILFRSIMGLGIGGDYPISATIMSEYSNVKDRGKLVALVFSNQALGSIAALIVGVVAALTLPPDIAWRVMAGFGAIPAATVIYLRRKVPETPRYSLIAKGDVEEAKKAAQFVGANLQVKDSLKAPNSSTKLNIMTFLRNYSLLLIGTAGTWFILDIAFYGTGVYSSSVITPIFGSPFSSTITSITEFQSELAKQLFIGGIPYLVGFPGYFTAVALIDKLGRKLIQVQGFIVMGILYGIVSLVLFQAGKSISFTIPATVAFILYSLTFFFIDFGANTTTFVIPSEVYPTKFRSTGHGISAASGKLGAAITTYLFPSLVASIGFRNIFVLLTAVSIIGAILTIVLIPEPKMKSLEDVAKEEIQTETESE Thermoprotei_Reysenbach_2002 Sulfolobus_acidocaldarius_DSM_639 Sulfolobus_acidocaldarius_DSM_639 NC_007181 712521..714002 Chen,L.,_Brugger,K.,_Skovgaard,M.,_Redder,P.,_She,Q.,_Torarinsson,E.,_Greve,B.,_Awayez,M.,_Zibat,A.,_Klenk,H.-P._and_Garrett,R.A. NA 0:1482 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000077.COMPLETENESS:_full_length. NA 24-JAN-2012 Sulfolobus_acidocaldarius_DSM_639_chromosome,_complete_genome. NA Sulfolobaceae_Stetter_1989 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sulfolobus_acidocaldarius_Q4JAC9_SULAC.gb Sulfolobus_Brock_et_al._1972 70605853 J._Bacteriol._187_(14),_4992-4999_(2005) NA NC_007181 NA NA Sulfolobales_Stetter_1989 not_Crenarchaeota_Cavalier-Smith_2002 15995215 1482 NA genomic_DNA NA DSM_639 NA Sulfolobus_acidocaldarius_Brock_et_al._1972 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 330779 Archaea,_Crenarchaeota,_Thermoprotei,_Sulfolobales,_Sulfolobaceae,_Sulfolobus The_genome_of_Sulfolobus_acidocaldarius,_a_model_organism_of_the_Crenarchaeota NA NC_007181.1 CTATTCACTTTCTGTTTCTGTTTGAATTTCCTCTTTAGCAACGTCTTCTAAGCTCTTCATCTTAGGTTCAGGTATTAATACAATAGTCAGGATAGCACCTATTATACTGACAGCAGTTAACAGTACGAATATATTCCTAAATCCAATAGAGGCAACTAAACTGGGAAACAGATAAGTTGTTATTGCAGCTCCTAATTTTCCGCTAGCTGCAGATATTCCGTGACCTGTACTTCTAAACTTAGTAGGATATACTTCAGATGGTATTACAAACGTTGTAGTATTAGCACCAAAGTCTATAAAGAAGAAGGTTAGTGAATATAATATAAATGCTACAGTGGCAGGTATCGTAAATGATATACTTTTACCAGCTTGAAATAATACTAATGAGACTATACCATATAATATTCCCATTACTATGAAGCCTTGTACTTGTATCAATTTTCTCCCTAACTTATCGATTAGGGCTACAGCTGTGAAATATCCAGGGAAACCGACTAAATATGGTATGCCTCCAATGAATAACTGCTTTGCCAATTCACTTTGAAATTCAGTAATAGAAGTAATAGTTGAACTAAATGGTGACCCAAATATTGGTGTAATAACAGATGATGAATAAACTCCTGTTCCATAAAATGCTATGTCAAGAATAAACCAGGTTCCAGCAGTTCCAATTAGCAACAAAGAGTAGTTCCTTAGGAAAGTCATTATGTTCAGCTTAGTTGAGGAGTTAGGAGCCTTTAAACTATCCTTCACCTGTAGATTAGCTCCAACAAATTGGGCAGCCTTCTTTGCCTCTTCCACATCTCCTTTAGCTATTAATGAGTACCTAGGTGTCTCTGGTACTTTCCTCCTTAGGTAAATAACGGTGGCTGCAGGTATTGCGCCAAATCCTGCCATAACTCTCCATGCAATATCTGGAGGTAATGTTAAAGCAGCGACAACTCCAACTATTAGGGCTGCAATGGAACCTAAAGCTTGATTTGAAAAGACTAAAGCAACTAATTTTCCTCTATCTTTCACATTTGAATACTCACTCATAATTGTTGCAGAAATAGGATAATCCCCTCCTATACCTAGACCCATTATCGACCTGAAGAGAATTAATAAAGGTAAGTTTGGAGATAAAGCACTTAACAAAGCACCAGCTGTAAGCAAAGAAGCCTCAACACCATATACCTTTTTCCTTCCCAGTCTGTCTCCAATATAACCAAACACTAATTGACCAATTATTGCTGTCCATATAGCCGAGGATGCTAAGAGTCCGGTCCAAAATGTAGCTTGATTCCCTATTAGATATTCTGTAAATCCAGCCATATTAAAACCATAGTACTTGTAAGCGTCTATCATCACAGCAAGAATATAAGAGATTATTAATAGGTCATAAGCATCGGTGAAAAATCCCATACCTGCAGTGTACCATATCTTAATATGATTCCAATTTAGTTTAGTATTGTCGATTCCTTTGAAAGGATTATTACTCAT > 1125 M1425_2224 NA major_facilitator_superfamily_MFS_1 YP_002830256.1 11 MSIAGRIERLPWTSFHTRLLALLTLGEFFELYDLFTGGFVASQVASFFKVSSATGIYYTVAIFFLGAFVGAIIFNYIGDSVGRRTALIINMAITSIALLLIPFSPNILTFGILRFIAGVGVGPEAILVLDVLITEFFPSTVRGRALAIGYTAAWTAPIVVAILAYLLLPHKYILYGWQWLFIIGGLGILTIIPFRFLIPESPRWLESKGRLDEAEKIVRRMEEIAIKEKGQLGEPLQVQVITSQRVTISELFSPLYRKRTIMLWVFEFLQAGVYYGFASLAPSVLFAKGFTLVHTLQYTMIIYTSYFISSLASIFIIDSQKFDRKWQVSIVMLLMGLVGLAFGFSSSPLEAVATGFTFGFLSNIFSNAFHQYGAELYPTRVRAFADGVQYSLSRLGNYIWLTLLPIVLYSNGPIAMYTVVFIMALIVTLDVAILGPKASKIELEELSK Thermoprotei_Reysenbach_2002 Sulfolobus_islandicus_M.14.25 Sulfolobus_islandicus_M.14.25 NC_012588 2033694..2035040 Reno,M.L.,_Held,N.L.,_Fields,C.J.,_Burke,P.V._and_Whitaker,R.J. NA 0:1347 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001400.URL_--_http://www.jgi.doe.gov_http://www.life.uiuc.edu/S.islandicusJGI_Project_ID:_4023460Source_DNA_and_archaea_available_from_Rachel_Whitaker(rwhitaker@life.uiuc.edu)Contacts:_Rachel_Whitaker_(rwhitaker@life.uiuc.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376)Meta_information:_Organism_display_name:_Sulfolobus_islandicus_M.14.25_GOLD_ID:_Gi01312_http://genomesonline.org/GOLD_CARDS/Gi01312.html_Sequencing_Status:_Complete_Phenotypes:_acidophile_Diseases:_None_Habitat:_Fresh_water_Oxygen_Requirement:_Facultative_cell_Shape:_Coccus-shaped_Motility:_Nonmotile_sporulation:_Nonsporulating_Energy_Source:_Lithotroph_Temperature_Range:_Hyperthermophile_Biotic_Relationship:_Free_living_Isolation:_Hot_spring_on_the_Kamchatka_Penninsula_in_the_RussianFar_East.COMPLETENESS:_full_length. NA 30-SEP-2011 Sulfolobus_islandicus_M.14.25_chromosome,_complete_genome. NA Sulfolobaceae_Stetter_1989 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sulfolobus_islandicus_C3MS15_SULIM.gb Sulfolobus_Brock_et_al._1972 227826411 Proc._Natl._Acad._Sci._U.S.A._106_(21),_8605-8610_(2009) NA NC_012588 NA NA Sulfolobales_Stetter_1989 not_Crenarchaeota_Cavalier-Smith_2002 19435847 1347 NA genomic_DNA NA M.14.25 NA Sulfolobus_islandicus NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 427317 Archaea,_Crenarchaeota,_Thermoprotei,_Sulfolobales,_Sulfolobaceae,_Sulfolobus Biogeography_of_the_Sulfolobus_islandicus_pan-genome NA NC_012588.1 ATGAGTATCGCTGGGAGAATAGAAAGACTACCTTGGACTTCTTTTCATACGAGACTCTTAGCCCTCTTAACTCTGGGAGAGTTCTTCGAGCTCTACGATCTATTTACTGGAGGCTTCGTAGCATCACAAGTGGCATCGTTTTTTAAAGTATCATCAGCAACTGGAATCTACTATACTGTTGCAATCTTCTTTCTAGGAGCATTCGTAGGTGCGATAATTTTCAACTATATAGGAGATTCAGTAGGTAGGAGGACTGCACTGATAATCAACATGGCAATAACCTCTATCGCCTTACTGTTGATACCATTTTCTCCAAATATTCTAACTTTTGGAATATTAAGATTTATAGCTGGTGTAGGAGTTGGACCAGAGGCAATATTAGTTTTAGACGTTTTAATAACGGAGTTCTTTCCGTCGACTGTCAGAGGTAGGGCGTTAGCAATAGGTTATACTGCAGCTTGGACTGCACCTATAGTCGTCGCAATTCTAGCTTATCTTCTTCTGCCTCATAAATACATTCTATACGGTTGGCAATGGTTATTCATAATAGGAGGCTTAGGTATACTTACAATAATACCATTTAGATTCCTAATTCCAGAATCTCCTAGATGGTTAGAAAGTAAGGGAAGATTGGATGAGGCTGAAAAAATAGTTAGAAGGATGGAGGAAATAGCTATTAAGGAAAAGGGGCAATTGGGAGAACCATTACAGGTCCAAGTTATAACTTCACAAAGGGTTACAATATCTGAATTATTCTCACCACTGTATAGAAAGAGGACAATAATGCTATGGGTTTTTGAATTCTTACAAGCTGGCGTATATTACGGTTTTGCCTCACTGGCCCCATCAGTGCTATTTGCGAAAGGTTTCACATTAGTACATACTCTACAGTACACGATGATAATCTATACCTCATACTTTATTAGTTCTCTAGCATCAATATTTATCATAGATAGTCAAAAGTTTGACAGAAAATGGCAGGTAAGTATTGTAATGTTATTAATGGGGTTAGTAGGACTAGCTTTTGGATTCTCCTCCTCTCCTCTGGAGGCAGTAGCAACTGGCTTCACATTTGGTTTCTTGTCAAATATATTTTCCAATGCTTTCCATCAATACGGCGCTGAGCTATATCCAACTAGAGTAAGGGCTTTTGCAGATGGTGTACAGTACTCATTAAGTAGATTAGGAAACTACATTTGGTTAACTCTCTTACCAATAGTGTTATATAGTAACGGACCAATTGCAATGTACACAGTGGTATTCATAATGGCTCTTATAGTAACTCTAGATGTGGCAATTTTAGGACCTAAAGCTTCAAAGATTGAACTTGAAGAATTATCAAAATAA > 1126 LD85_2497 NA major_facilitator_superfamily_MFS_1 YP_003420504.1 11 MSIAGRIERLPWTSFHTRLLALLTLGEFFELYDLFTGGFVASQVASFFKVSSATGIYYTVAIFFLGAFVGAIIFNYIGDSVGRRTALIINMAITSITLLLIPFSPNILTFGILRFIAGVGVGPEAILVLDVLITEFFPSTVRGRALAIGYTAAWTAPIVVAILAYLLLPHKYILYGWQWLFIIGGLGILTIIPFRFLIPESPRWLESKGRLDEAEKIVRRMEEIAIKEKGQLGEPLQVQVITSQRVTISELFSPLYRKRTIMLWVFEFLQAGVYYGFASLAPSVLFAKGFTLVHTLQYTMIIYTSYFISSLASIFIIDSQKFDRKWQVSIIMLLMGLVGLAFGFSSSPLEAVATGFTFGFLSNIFSNAFHQYGAELYPTRVRAFADGVQYSLSRLGNYIWLTLLPIVLYSNGPVSMYTVVFIMALIVTLDVAILGPKASKIELEELSK Thermoprotei_Reysenbach_2002 Sulfolobus_islandicus_L.D.8.5 Sulfolobus_islandicus_L.D.8.5 NC_013769 2154064..2155410 Reno,M.L.,_Held,N.L.,_Fields,C.J.,_Burke,P.V._and_Whitaker,R.J. NA 0:1347 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001731.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4023472Source_DNA_and_organism_available_from_Rachel_Whitaker(rwhitaker@life.uiuc.edu)Contacts:_Rachel_Whitaker_(rwhitaker@life.uiuc.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Sulfolobus_islandicus_L.D.8.5GOLD_Stamp_ID_::_Gi01317Isolation_Site_::_Lassen_National_Park_in_CaliforniaIsolation_Country_::_USALatitude_::_40.49703Longitude_::_-121.42752Oxygen_Requirement_::_AerobeCell_Shape_::_Coccus-shapedMotility_::_NonmotileSporulation_::_NonsporulatingTemperature_Range_::_HyperthermophileTemperature_Optimum_::_75_-_85CGram_Staining_::_gram-Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Fresh_waterPhenotypes_::_AcidophileEnergy_Source_::_Lithotroph##Metadata-END##COMPLETENESS:_full_length. NA 13-OCT-2011 Sulfolobus_islandicus_L.D.8.5_chromosome,_complete_genome. NA Sulfolobaceae_Stetter_1989 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sulfolobus_islandicus_D2PFL8_SULID.gb Sulfolobus_Brock_et_al._1972 284996407 Unpublished NA NC_013769 NA NA Sulfolobales_Stetter_1989 not_Crenarchaeota_Cavalier-Smith_2002 NA 1347 NA genomic_DNA NA L.D.8.5 NA Sulfolobus_islandicus NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 425944 Archaea,_Crenarchaeota,_Thermoprotei,_Sulfolobales,_Sulfolobaceae,_Sulfolobus Contemporary_genome_evolution_in_thermophilic_Archaea NA NC_013769.1 ATGAGTATCGCTGGGAGAATAGAAAGACTACCTTGGACTTCTTTTCATACGAGACTCTTAGCCCTCTTAACTCTGGGAGAGTTCTTCGAGCTCTACGATCTATTTACTGGAGGCTTCGTAGCATCACAAGTGGCATCGTTTTTTAAAGTATCATCGGCAACTGGAATCTACTATACTGTTGCAATCTTCTTTCTAGGAGCATTCGTAGGTGCGATAATTTTCAACTATATAGGAGATTCAGTAGGTAGGAGGACTGCACTGATAATCAACATGGCAATAACCTCTATCACCTTACTGTTGATACCATTTTCTCCAAATATTCTAACTTTTGGAATATTAAGATTTATAGCTGGTGTAGGAGTTGGACCAGAGGCAATATTAGTTTTAGACGTTTTAATAACGGAGTTCTTTCCGTCGACTGTAAGAGGTAGGGCGTTGGCAATAGGTTATACTGCAGCTTGGACCGCACCTATAGTCGTCGCAATTCTAGCTTATCTTCTTCTGCCTCATAAATACATTCTATACGGTTGGCAATGGCTATTCATAATAGGAGGCTTAGGTATACTTACAATAATACCATTTAGATTCCTAATTCCAGAATCTCCTAGATGGTTAGAAAGTAAGGGAAGATTGGATGAGGCTGAAAAAATAGTTAGAAGGATGGAGGAAATAGCTATTAAGGAAAAGGGGCAATTGGGAGAACCATTACAAGTCCAAGTTATAACTTCACAAAGGGTTACAATATCTGAACTATTCTCGCCACTGTATAGAAAGAGGACAATAATGCTATGGGTTTTTGAATTCTTACAAGCTGGCGTATATTACGGTTTTGCCTCACTGGCCCCATCAGTACTATTTGCGAAAGGTTTCACATTAGTACATACTCTACAGTACACGATGATAATCTATACCTCATACTTTATTAGTTCTCTAGCATCAATATTTATCATAGATAGTCAAAAGTTTGACAGGAAATGGCAGGTAAGTATTATAATGTTATTAATGGGGTTAGTAGGACTAGCTTTTGGATTCTCCTCCTCTCCTCTGGAGGCAGTAGCAACTGGCTTCACATTTGGTTTCTTATCAAATATATTTTCCAATGCTTTCCATCAATACGGCGCTGAGCTATATCCAACTAGAGTAAGGGCTTTTGCAGATGGTGTACAGTACTCATTAAGTAGATTAGGAAACTACATTTGGTTAACTCTCTTACCAATAGTGTTATATAGTAACGGACCAGTTTCAATGTACACAGTGGTATTCATAATGGCTCTTATAGTAACTCTAGACGTAGCAATTTTAGGACCTAAGGCTTCAAAGATTGAACTTGAAGAATTATCAAAATAA > 1127 LD85_0421 NA major_facilitator_superfamily_MFS_1 YP_003418572.1 11 MNWKLVVLVIGMSLTFWDIFNVPYIINYARKQFEVSTVIANLPLSAEMIGYAIGGVINGLLSSFKGRKIGLLTSMGLVSLGSLIGFLSQTFSWIIIAEFIIGLGIEGEISVVPTYISETVSAERRGRAVGLVTASGFLTTLIVGPIAVVLGGEWRLLFLAGLLVSLIALITRVWLPESPMWIAKKEMKLSWDFGILMMTIVWFLSYFTGYALFSDPIFTFIRSHGFTNPALYFTYILYGDPLGVVIGTLLNDNFERKYSVSLVNILAGLVIVAWFFSSGSLMLIMGFMEMFLQGFKFPTMYTYTAEIFRTRIRTLGYGVADGIGHLGGAIGPIIFSLAYVNMRLLSFIVLAVVAGIAGAIVGIWGIKTTGKPLESIKG Thermoprotei_Reysenbach_2002 Sulfolobus_islandicus_L.D.8.5 Sulfolobus_islandicus_L.D.8.5 NC_013769 352723..353859 Reno,M.L.,_Held,N.L.,_Fields,C.J.,_Burke,P.V._and_Whitaker,R.J. NA 0:1137 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001731.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4023472Source_DNA_and_organism_available_from_Rachel_Whitaker(rwhitaker@life.uiuc.edu)Contacts:_Rachel_Whitaker_(rwhitaker@life.uiuc.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Sulfolobus_islandicus_L.D.8.5GOLD_Stamp_ID_::_Gi01317Isolation_Site_::_Lassen_National_Park_in_CaliforniaIsolation_Country_::_USALatitude_::_40.49703Longitude_::_-121.42752Oxygen_Requirement_::_AerobeCell_Shape_::_Coccus-shapedMotility_::_NonmotileSporulation_::_NonsporulatingTemperature_Range_::_HyperthermophileTemperature_Optimum_::_75_-_85CGram_Staining_::_gram-Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Fresh_waterPhenotypes_::_AcidophileEnergy_Source_::_Lithotroph##Metadata-END##COMPLETENESS:_full_length. NA 13-OCT-2011 Sulfolobus_islandicus_L.D.8.5_chromosome,_complete_genome. NA Sulfolobaceae_Stetter_1989 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sulfolobus_islandicus_D2PG08_SULID.gb Sulfolobus_Brock_et_al._1972 284996407 Unpublished NA NC_013769 NA NA Sulfolobales_Stetter_1989 not_Crenarchaeota_Cavalier-Smith_2002 NA 1137 NA genomic_DNA NA L.D.8.5 NA Sulfolobus_islandicus NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 425944 Archaea,_Crenarchaeota,_Thermoprotei,_Sulfolobales,_Sulfolobaceae,_Sulfolobus Contemporary_genome_evolution_in_thermophilic_Archaea NA NC_013769.1 ATGAACTGGAAATTAGTAGTCTTGGTAATCGGGATGTCGTTAACCTTTTGGGATATATTCAACGTTCCTTACATTATAAATTACGCTAGAAAGCAGTTTGAAGTCTCTACAGTTATCGCTAACTTACCATTATCTGCTGAAATGATTGGATATGCAATTGGTGGAGTAATAAACGGATTGCTATCATCATTCAAGGGAAGAAAAATTGGGCTATTGACTTCCATGGGACTTGTATCATTAGGATCCCTAATCGGCTTTTTATCGCAAACGTTTTCATGGATAATCATAGCAGAATTCATTATAGGATTAGGAATAGAAGGAGAAATCAGTGTAGTGCCAACTTATATATCAGAAACCGTATCTGCTGAAAGGAGAGGTAGGGCAGTTGGGTTAGTTACAGCCTCTGGCTTTTTAACAACGTTGATTGTGGGACCTATTGCAGTAGTCTTAGGAGGCGAATGGAGATTACTTTTCTTGGCCGGACTTCTAGTTTCTCTGATTGCGTTAATTACTAGGGTTTGGCTGCCTGAATCTCCAATGTGGATTGCCAAAAAGGAGATGAAGTTAAGCTGGGATTTCGGAATCCTCATGATGACTATCGTTTGGTTCTTAAGCTATTTTACGGGTTATGCGTTATTTTCTGATCCCATCTTTACCTTTATTAGGTCTCACGGTTTTACTAATCCTGCGTTGTACTTCACTTATATTCTATATGGTGATCCACTGGGTGTTGTAATTGGTACGTTATTGAACGATAACTTTGAACGCAAGTATAGCGTATCATTAGTAAACATTCTAGCTGGTCTGGTAATAGTAGCGTGGTTTTTCAGTAGTGGTTCTCTAATGCTAATAATGGGATTTATGGAAATGTTCTTGCAAGGTTTCAAATTCCCCACGATGTACACTTACACTGCTGAAATTTTTAGAACGAGAATTAGAACTTTAGGTTATGGTGTTGCTGATGGTATTGGACACTTAGGAGGTGCAATTGGTCCAATAATCTTTTCCTTGGCGTATGTTAACATGCGATTATTATCATTTATAGTTTTAGCAGTTGTAGCTGGTATTGCAGGGGCTATAGTGGGCATATGGGGAATTAAAACTACTGGAAAACCATTAGAGAGTATTAAAGGATAG > 1128 LD85_0736 NA major_facilitator_superfamily_MFS_1 YP_003418833.1 11 MAEKAAVKAGEAIARMDRIPIWGLSYIFIGILGIGFLFTFYDIFDINVSFIQTALTLFHVSNPTSPQIPALLGPIVLLNLVGYIIGALILSPISDVIGRRRMLMITMIITGLGSLYNALANNYVNFLVARTITGIGVGADLAIVNTYIGEVAPINGRARYTSLVFLFSTLGATLGIWLGLFLTTPSAPFPLGLPYALGGSGFFAVNGWRVMYGIGALLALIGLLLRFSLPESPRWLISKGKLTEAERIVEVMEKKATGKLGNLPPLPNIIQPYIAERYSYLDALKTIFSSSLYIKRFGILVSMWLFGYMTVYTLAAGLTSVLASLGFAPPEAGMIAAIGVIGFILVPITTFFVGDRLERKTWTVISVVFTIIGGLLIAIAGTNIALSFLGSIILFYGFNLWVPTSYAWTAESFPTRARSTGFALCDGVGHIGGGIGIIAISSFIGSLIASGVTTALAIEVFLLIALFQVISTIIAIAIGHRSANKRLDEVSP Thermoprotei_Reysenbach_2002 Sulfolobus_islandicus_L.D.8.5 Sulfolobus_islandicus_L.D.8.5 NC_013769 618241..619719 Reno,M.L.,_Held,N.L.,_Fields,C.J.,_Burke,P.V._and_Whitaker,R.J. NA 0:1479 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001731.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4023472Source_DNA_and_organism_available_from_Rachel_Whitaker(rwhitaker@life.uiuc.edu)Contacts:_Rachel_Whitaker_(rwhitaker@life.uiuc.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Sulfolobus_islandicus_L.D.8.5GOLD_Stamp_ID_::_Gi01317Isolation_Site_::_Lassen_National_Park_in_CaliforniaIsolation_Country_::_USALatitude_::_40.49703Longitude_::_-121.42752Oxygen_Requirement_::_AerobeCell_Shape_::_Coccus-shapedMotility_::_NonmotileSporulation_::_NonsporulatingTemperature_Range_::_HyperthermophileTemperature_Optimum_::_75_-_85CGram_Staining_::_gram-Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Fresh_waterPhenotypes_::_AcidophileEnergy_Source_::_Lithotroph##Metadata-END##COMPLETENESS:_full_length. NA 13-OCT-2011 Sulfolobus_islandicus_L.D.8.5_chromosome,_complete_genome. NA Sulfolobaceae_Stetter_1989 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sulfolobus_islandicus_D2PHI5_SULID.gb Sulfolobus_Brock_et_al._1972 284996407 Unpublished NA NC_013769 NA NA Sulfolobales_Stetter_1989 not_Crenarchaeota_Cavalier-Smith_2002 NA 1479 NA genomic_DNA NA L.D.8.5 NA Sulfolobus_islandicus NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 425944 Archaea,_Crenarchaeota,_Thermoprotei,_Sulfolobales,_Sulfolobaceae,_Sulfolobus Contemporary_genome_evolution_in_thermophilic_Archaea NA NC_013769.1 ATGGCAGAAAAGGCTGCAGTAAAAGCAGGGGAAGCGATTGCTAGAATGGATAGAATCCCAATATGGGGACTTTCATATATTTTTATAGGAATATTAGGTATAGGGTTTCTCTTCACATTTTATGACATTTTCGATATAAATGTATCATTTATACAAACGGCATTAACGCTATTTCACGTTAGCAATCCAACTTCTCCTCAGATTCCAGCATTACTAGGCCCCATAGTCCTATTAAACCTAGTAGGGTATATAATAGGAGCCCTTATACTTTCTCCAATATCTGACGTAATAGGCCGGAGGAGGATGCTAATGATAACTATGATCATTACAGGCCTTGGCAGTTTATATAACGCATTGGCGAATAATTATGTTAATTTTTTAGTAGCAAGGACCATAACTGGTATTGGTGTTGGTGCTGATTTAGCAATAGTTAATACTTATATTGGAGAAGTAGCTCCCATTAACGGAAGGGCTAGATACACTAGTCTAGTATTCTTATTTTCAACACTAGGCGCAACACTAGGCATATGGTTAGGATTGTTCTTAACAACGCCCTCTGCTCCATTTCCTCTTGGATTACCGTATGCACTTGGTGGAAGTGGGTTCTTTGCGGTTAATGGATGGAGAGTAATGTACGGGATAGGTGCGTTATTGGCTTTAATAGGATTGCTCTTAAGGTTTAGCTTACCTGAATCTCCAAGATGGTTAATATCTAAGGGTAAATTAACTGAAGCTGAAAGGATAGTTGAGGTGATGGAGAAGAAAGCTACTGGCAAGTTAGGTAATCTCCCACCATTACCCAATATAATTCAGCCTTATATTGCAGAGAGGTATTCCTATTTAGATGCATTAAAGACCATATTTAGTTCCTCACTTTATATAAAGAGGTTTGGAATACTTGTCTCAATGTGGTTATTTGGTTATATGACCGTCTATACCTTGGCAGCTGGTTTAACATCTGTATTAGCCTCACTGGGATTTGCTCCACCAGAAGCTGGAATGATTGCGGCAATAGGTGTTATAGGTTTCATATTAGTTCCTATAACAACCTTCTTTGTTGGAGATAGACTTGAAAGAAAGACGTGGACAGTCATTTCAGTAGTCTTCACAATAATTGGGGGATTATTAATAGCTATAGCTGGTACTAACATAGCATTATCTTTCCTAGGATCTATAATTCTCTTTTACGGTTTTAATTTATGGGTTCCAACATCATACGCTTGGACTGCTGAGAGTTTTCCGACTAGGGCTAGGAGTACTGGTTTCGCCTTATGTGACGGTGTAGGTCATATAGGGGGTGGGATAGGGATTATTGCAATTTCCTCTTTCATAGGTTCTCTGATAGCTTCTGGGGTCACTACAGCTTTGGCAATAGAGGTATTTTTGCTAATAGCCTTATTCCAAGTAATTTCAACAATAATTGCAATAGCAATAGGACATAGGTCTGCTAATAAGAGATTGGATGAGGTTTCACCCTAA > 1129 SSO2505 Similar_to_SSO2516;_Transport,_Cell_membrane_transport sugar_transport_protein NP_343848.1 11 MTFIRYFYELTDLRNFMSSKLDEYLARIDRLPTWGLSYALLWAIGFSYFITLYDAVGNIGAALPYIPFINASQASLIASLGLFGYIPGSLGLGYLADRIGRRTVLIITVLLTAIGSLGMALSINFPMLAIFRFIEGAGIGGDLNLAMVYVSEFAPSAKRGKYANWIYLAGWIAVGVGATIAALLVTGLPSVGWRLAFGIAAIMAVAALVFRIRAPETVRFLVKKGRINEAESIVRIMEETAMKRARVQSLPEPKIINYSYQTTNPFSILAKRVFAKRLIGLILFWFFIYFVQYTFSTLWDYYGKFIGYSGTMLNQFVLLTGFSALGDTLMAFLLLIIIERTDRRLITQIGSIGWLVGMIVASYFAVHFNLLGMALTLGLITNAIGGGMSYLAGYLISSESFPTAARSTGFAITDGLGHLGGAIGPLLLFPLVVATGPINAWAIEAFPVVIAAVILWFTVPRTVGVRLEEINEIHLTPQQPQGGIIKSEK Thermoprotei_Reysenbach_2002 Sulfolobus_solfataricus_P2 Sulfolobus_solfataricus_P2 NC_002754 2273466..2274935 She,Q.,_Singh,R.K.,_Confalonieri,F.,_Zivanovic,Y.,_Allard,G.,_Awayez,M.J.,_Chan-Weiher,C.C.,_Clausen,I.G.,_Curtis,B.A.,_De_Moors,A.,_Erauso,G.,_Fletcher,C.,_Gordon,P.M.,_Heikamp-de_Jong,I.,_Jeffries,A.C.,_Kozera,C.J.,_Medina,N.,_Peng,X.,_Thi-Ngoc,H.P.,_Redder,P.,_Schenk,M.E.,_Theriault,C.,_Tolstrup,N.,_Charlebois,R.L.,_Doolittle,W.F.,_Duguet,M.,_Gaasterland,T.,_Garrett,R.A.,_Ragan,M.A.,_Sensen,C.W._and_Van_der_Oost,J. NA 0:1470 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE006641.COMPLETENESS:_full_length. NA 22-JAN-2012 Sulfolobus_solfataricus_P2_chromosome,_complete_genome. NA Sulfolobaceae_Stetter_1989 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Sulfolobus_solfataricus_Q97VV2_SULSO.gb Sulfolobus_Brock_et_al._1972 15896971 Proc._Natl._Acad._Sci._U.S.A._98_(14),_7835-7840_(2001) NA NC_002754 NA NA Sulfolobales_Stetter_1989 not_Crenarchaeota_Cavalier-Smith_2002 11427726 1470 NA genomic_DNA NA P2 NA Sulfolobus_solfataricus_Zillig_et_al._1980 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 273057 Archaea,_Crenarchaeota,_Thermoprotei,_Sulfolobales,_Sulfolobaceae,_Sulfolobus The_complete_genome_of_the_crenarchaeon_Sulfolobus_solfataricus_P2 NA NC_002754.1 TTACTTCTCGCTTTTTATAATTCCTCCTTGAGGTTGTTGTGGAGTTAGATGGATTTCGTTTATCTCCTCTAATCTTACTCCAACAGTCCTAGGAACGGTAAACCATAAGATCACTGCAGCTATAACTACCGGGAATGCCTCAATAGCCCAGGCATTTATTGGTCCAGTGGCTACTACTAATGGGAAGAGCAATAATGGTCCTATAGCTCCTCCAAGATGTCCTAATCCATCAGTTATAGCAAATCCAGTAGATCTAGCTGCTGTAGGGAAGGACTCACTACTTATTAAATATCCAGCTAAATATGACATACCACCCCCAATAGCGTTCGTAATGAGTCCTAAAGTCAATGCCATACCTAATAAGTTAAAGTGTACAGCAAAATACGATGCAACTATCATACCTACTAACCAACCTATGGAGCCTATTTGGGTAATCAATCTCCTATCTGTTCTCTCTATAATAATTAATAGAAGAAATGCCATAAGAGTATCTCCCAATGCTGAAAATCCTGTAAGGAGAACAAACTGGTTAAGCATAGTGCCAGAGTAACCTATGAACTTTCCGTAGTAATCCCATAACGTCGAAAATGTATACTGCACAAAGTATATGAAAAACCAGAACAATATGAGCCCTATTAAACGTTTTGCAAATACTCTTTTGGCTAATATTGAAAATGGGTTTGTAGTTTGATACGAATAATTAATTATTTTAGGTTCTGGTAACGACTGAACTCTAGCTCTCTTCATGGCAGTCTCTTCCATTATTCTAACGATACTCTCAGCTTCGTTTATCCTGCCCTTTTTAACTAAGAATCTTACAGTCTCTGGAGCCCTAATTCTAAATACTAATGCAGCAACAGCCATTATGGCTGCTATTCCAAAGGCTAATCTCCATCCTACAGAGGGTAAACCAGTAACAAGTAATGCGGCAATTGTTGCACCGACACCAACTGCTATCCATCCAGCTAAGTAAATCCAGTTCGCATATTTACCTCTCTTAGCACTTGGGGCAAATTCAGATACATAAACCATAGCTAAATTTAAGTCTCCGCCTATTCCAGCTCCTTCAATGAATCTGAATATTGCGAGCATGGGGAAGTTGATTGATAATGCCATTCCTAAACTGCCTATTGCAGTTAGTAAGACGGTGATTATTAGCACAGTCCTTCTGCCTATTCTATCAGCTAAATAACCTAATCCTAGTGAACCTGGAATATACCCAAAGAGACCTAGGGATGCTATTAGCGAAGCTTGAGATGCGTTGATAAAAGGTATATATGGTAGTGCTGCCCCTATATTTCCCACAGCGTCATAGAGTGTTATGAAGTAGCTAAATCCTATAGCCCATAGTAGCGCATATGATAATCCCCATGTTGGTAGTCTATCTATTCTAGCCAGATACTCATCTAACTTACTACTCATGAAGTTTCTTAGGTCAGTTAATTCATAAAAATATCTTATGAAAGTCAA > 1130 RS9917_01936 COG0477_Permeases_of_the_major_facilitator_superfamily glucose_transport_protein EAQ68056.1 11 MAPSLQRREADQRIQFILRLAIAAALGGFLFGYDTAVINGAVSSIQATFNASAMGLGLAVSSALLGSAAGALGAGWLADRIGRRRSMWLAAVLFIASAVGSALAPTLRDLVIWRVIGGVAVGFASVLAPAYIAEISPANLRGRTGSLQQLAIVVGIFIALLFDYVIVLATVDQEPLSSVGPLPAWRWMLMSELIPALLYGGMVLRIPESPRYLVQIGCIEHAREVILKTLGEPTQEVIDRIQASLGHRNGGQIQDLFSKRSLLLPVVWTGVLLAIFQQFVGINVIFYYSSSLWKAVGFSTTDSLSITVVTSITNVVTTFLAIATIDRLGRRPLLLAGSVVITISLGLMSWTFAGAPIVNGEPQLTGAASLVALISANVFVFAFGFSWGPVMWVLLGEMFSNRIRALALGLSATVNWLANFLISTTFPVLLQSSGPALAYGLYATAAAISFFFVLFMVRETKGRELEDMA NA Synechococcus_sp._RS9917 Synechococcus_sp._RS9917 AANP01000007 47147..48556 Scanlan,D.,_Ferriera,S.,_Johnson,J.,_Kravitz,S.,_Halpern,A.,_Remington,K.,_Beeson,K.,_Tran,B.,_Rogers,Y.-H.,_Friedman,R._and_Venter,J.C. NA 0:1410 Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation. NA 30-JAN-2006 Synechococcus_sp._RS9917_strain_RS9917_1099465004201,_whole_genome_shotgun_sequence. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Synechococcus_sp_A3ZAB1_9SYNE.gb Synechococcus 86166726 Submitted_(27-JAN-2006)_J_Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA AANP01000007 NA NA Chroococcales cyanophytes NA 1410 NA genomic_DNA NA RS9917;_RCC556 NA Synechococcus_sp._RS9917 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 221360 Bacteria,_Cyanobacteria,_Chroococcales,_Synechococcus Direct_Submission NA AANP01000007.1 TCAGGCCATGTCTTCCAGCTCACGCCCCTTCGTTTCCCGCACCATGAACAACACGAAGAAGAAGGAGATCGCTGCAGCTGTGGCATACAAGCCATAGGCGAGCGCAGGCCCCGATGACTGGAGCAACACGGGGAAGGTGGTGGAAATGAGGAAATTAGCCAGCCAGTTGACGGTGGCGGAGAGCCCCAGGGCCAGGGCGCGGATGCGATTGCTGAACATCTCACCCAAAAGCACCCACATCACCGGCCCCCAGGAGAAACCGAAGGCAAACACAAACACATTCGCCGAAATCAGGGCCACCAACGAGGCGGCGCCGGTCAGCTGCGGTTCGCCGTTGACAATCGGAGCGCCGGCAAACGTCCAGCTCATCAATCCCAGGCTGATCGTGATCACCACGGAGCCAGCCAGCAGCAGGGGCCGCCGCCCGAGGCGGTCAATCGTGGCAATCGCCAAAAATGTGGTGACCACATTGGTGATCGACGTCACCACCGTGATGCTGAGGCTGTCGGTGGTGCTGAATCCCACCGCCTTCCAGAGAGAACTGGAGTAGTAGAAGATCACGTTGATGCCAACGAATTGCTGGAAGATCGCCAACAGCACGCCAGTCCACACCACGGGCAAAAGCAGGGAACGCTTCGAGAACAGATCCTGAATCTGTCCACCATTGCGATGGCCGAGGCTGGCCTGAATGCGATCAATCACCTCCTGGGTGGGTTCACCCAGAGTCTTGAGAATCACCTCGCGGGCATGCTCAATGCAACCGATCTGAACCAGATAGCGAGGGCTTTCGGGAATCCTCAGCACCATGCCGCCGTACAACAACGCCGGGATCAGCTCAGACATCAACATCCAGCGCCAGGCGGGCAGCGGGCCCACACTGGAGAGCGGCTCCTGATCCACCGTGGCCAGCACGATCACGTAATCAAACAGAAGCGCGATAAAAATCCCCACCACAATTGCCAACTGCTGCAGCGAACCGGTGCGCCCCCGCAAGTTGGCCGGAGAAATCTCAGCGATGTAAGCCGGCGCCAGAACGCTGGCAAAACCAACGGCCACACCACCGATCACACGCCAGATCACCAGATCGCGCAGCGTCGGTGCCAGGGCGGACCCGACCGCACTGGCGATGAAGAGCACCGCCGCAAGCCACATGCTGCGCCGGCGACCGATGCGATCCGCCAGCCAGCCGGCTCCGAGAGCACCAGCGGCTGAACCGAGCAAGGCTGACGACACCGCCAGACCGAGCCCCATCGCCGAGGCGTTGAATGTGGCCTGAATCGAGGACACGGCCCCATTGATGACCGCCGTGTCATACCCGAAGAGGAAGCCGCCCAAGGCCGCCGCAATCGCAAGCCGCAGGATGAATTGGATCCGCTGATCGGCTTCGCGGCGCTGAAGACTGGGGGCCAT > 1131 RS9916_29374 COG0477_Permeases_of_the_major_facilitator_superfamily putative_proline/betaine_transporter,_MFS_family_protein EAU73702.1 11 MVRWPSEKPLVRVICAGLIGNVMEWYDFSLYGYFAVTIGHEFFPDAQPGVSLLAAFATFAAGFLVRPLGGVVLGRIGDRMGSQHALLISVVAMAIPTTLMAALPTYNQVGILAPILLVILRLMQGLSAGGEYTTSIIYLCERAPSRKRGWMAMWGLWGSVAGMLLASALGDCLAHGLSPEQLHAWGWRIAFALGSVIALVGVLLRNHLRPMQSVEPPSNQPLRELVMHRSALLRVLLLNVASSVSFYLLFVYVVSDLESIDKLASATALNLNTKAMGLLLILYPISALIGDRVGRKPMFILGSGWLVLGAWPVLHLLQSHDPSTIWRGELGLVMAVAILAGAKNAANVELMPQAIRNTGLALAFNLAEGWIGGLTPLAATWLVMHSGHPTSPALLLVGAGVVTLVTAVGFTRETAFAPLQGSTTGEGAPVSAKT NA Synechococcus_sp._RS9916 Synechococcus_sp._RS9916 AAUA01000002 202598..203902 Scanlan,D.,_Ferriera,S.,_Johnson,J.,_Kravitz,S.,_Halpern,A.,_Remington,K.,_Beeson,K.,_Tran,B.,_Rogers,Y.-H.,_Friedman,R._and_Venter,J.C. NA 0:1305 Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation.Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation. NA 12-OCT-2006 Synechococcus_sp._RS9916_1100013017032,_whole_genome_shotgun_sequence. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Synechococcus_sp_Q05TA1_9SYNE.gb Synechococcus 116067733 Submitted_(11-OCT-2006)_J_Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA AAUA01000002 NA NA Chroococcales cyanophytes NA 1305 NA genomic_DNA NA RS9916 NA Synechococcus_sp._RS9916 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 221359 Bacteria,_Cyanobacteria,_Chroococcales,_Synechococcus Direct_Submission NA AAUA01000002.1 TTAGGTCTTTGCTGAGACGGGCGCGCCTTCTCCGGTCGTGCTGCCCTGCAGGGGGGCAAAGGCGGTTTCGCGCGTGAATCCCACGGCGGTCACCAGGGTGACCACCCCAGCACCCACTAAAAGCAAGGCGGGGCTTGTTGGATGGCCGCTGTGCATCACCAGCCAGGTGGCTGCCAGCGGAGTCAGTCCCCCGATCCAGCCTTCCGCAAGGTTGAACGCGAGTGCCAGGCCTGTGTTGCGAATCGCCTGCGGCATCAGTTCCACATTGGCTGCGTTTTTGGCTCCGGCCAGAATGGCGACGGCCATCACCAGCCCCAGCTCCCCTCGCCAGATCGTCGAGGGATCGTGGCTCTGCAGCAGATGGAGCACGGGCCAGGCTCCCAGCACAAGCCAGCCTGAGCCCAGGATGAACATCGGTTTTCGGCCGACTCGATCGCCGATCAGTGCCGAGATTGGGTAGAGGATCAACAGCAACCCCATCGCTTTGGTGTTGAGGTTGAGGGCGGTGGCTGACGCCAATTTGTCAATGCTCTCCAGGTCACTCACGACGTACACGAACAGCAGATAGAAGCTCACGCTGCTGGCAACATTCAGTAGAAGCACCCTTAGGAGTGCTGATCGATGCATCACCAGCTCTCTTAAGGGCTGATTGCTGGGTGGTTCGACCGATTGCATCGGGCGCAGATGGTTGCGCAGCAGCACCCCCACCAGGGCGATCACTGAACCCAAGGCAAAGGCGATCCGCCATCCCCAGGCGTGAAGCTGTTCCGGGCTCAATCCATGGGCCAGGCAATCGCCCAACGCCGAGGCGAGGAGCATGCCTGCAACCGATCCCCACAGTCCCCACATGGCCATCCAGCCGCGTTTGCGGGAAGGCGCCCGTTCGCAGAGATAAATGATCGACGTCGTGTATTCACCACCCGCTGAAAGTCCCTGCATGAGGCGCAAGATCACCAGCAGGATCGGCGCAAGGATGCCGACCTGGTTGTAGGTCGGCAGGGCCGCCATCAATGTGGTTGGGATCGCCATGGCCACCACGCTGATCAGCAGGGCGTGTTGACTTCCCATTCGGTCGCCAATGCGCCCGAGAACGACACCACCAAGCGGTCGAACGAGGAATCCGGCTGCAAACGTCGCGAAAGCCGCAAGCAGGGAAACACCGGGTTGTGCGTCTGGAAAAAACTCGTGGCCGATCGTGACCGCGAAGTAGCCATACAAGGAAAAGTCGTACCACTCCATCACGTTCCCGATCAGCCCTGCGCAGATCACACGGACCAAAGGCTTTTCGCTTGGCCAACGCACCAT > 1132 NA TeHXT hexose_transporter ACR78273.1 NA MVVGNIYVIAATAVVGGALFGFDISSVSAQLGENSYKCYFNQGPHGPPFDDDPNCSGPRDLVQGGITASMAAGSWLGALISGPLSDRVGRKTSITIGCIIWMVGSTLICAAQNIGMLIVGRIINGLAVGIESAQVPVYISEISPPSKRGRFVGIQQWAITWGILIMYYISYGCSFIGGQYSYNYSTAAWRIPWGLQMIPAVFLFIAMSFLPESPRWLARKDRWEDCHRVLAIVHGKGDLNHPFVALELEDIKEMCEFERRHKNVTYLDLFKPNMINRTLIGLFTQIWSQLTGMNVMMYYITYVFGMAGYSGNANLLASSIQYIINVFMTLPALAWIDRWGRRPTMLVGATLMMTFMYANAGIMAAHGVVVPGGINHVKEESMSVSGAAAKGLIACTYLFVASYAPTWGPASWIYPPELFPLRLRGKGVALATSGNWAFNTALGLFTPVSFSNIRWKTYLIFGVFNTAMFIHTFFLFPETAGKTLEETEAMFEDPNGIKYIGTPAWKTTKSTDKTVQMEHGNVEPKRGLSAHVENADEKKDASTNV bitunicate_ascomycetes Talaromyces_emersonii Talaromyces_emersonii_(anamorph:_Geosmithia_emersonii) FJ985745 1..302 Fernandes,S.,_Tuohy,M._and_Murray,P. NA 0:302 NA NA 10-JUN-2009 Talaromyces_emersonii_hexose_transporter_gene,_complete_cds. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Talaromyces_emersonii_C5J3S1_TALEM.gb Talaromyces 238915537 Submitted_(01-MAY-2009)_Biochemistry,_National_University_Ireland,_Newcastle_Road,_Galway,_Ireland fungi FJ985745 hexose_transporter NA green_and_blue_molds sac_fungi NA 302 NA genomic_DNA NA NA NA Talaromyces_emersonii NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 68825 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Talaromyces Direct_Submission NA FJ985745.1 ATGGTTGTCGGGAATATCTACGTGATCGCGGCCACCGCCGTCGTCGGCGGTGCGCTCTTTGGCTTTGATATCTCGTCCGTGTCGGCCCAGCTGGGCGAGAATTCCTACAAATGCTACTTCAACCAGGGACCCCATGGTCCCCCGTTCGACGACGACCCCAACTGCAGCGGTCCCCGCGATCTGGTGCAGGGTGGTATTACCGCGTCCATGGCCGCTGGTTCCTGGCTGGGCGCCTTGATTTCCGGTCCATTGTCCGACCGCGTGGGTCGGAAGACCTCCATCACGATCGGCTGTATTATCTG > 1133 TSTA_069430 encoded_by_transcript_TSTA_069430A MFS_sugar_transporter,_putative XP_002340910.1 NA MISRRLPPKYVLASILCSFGGVLFGMDTGVIGPVTIMHSYIASFGFVSSTVHGLIVSSILIPAAISSFFAGKVADILGRPKGISLGAFIFGLGAALEAGAAHLSMFIVGRCIEGIGEGLYLGTLVVYICEISPPSKRGPLTSTPQLLITLGLCVGFFVCYGSATVNSSLSWRLPFAILSALALSFSLASLWLPPSPRWLSLRGRTAEAIATWDILGVSHAEREKIEIAEGILEIANPEEASHPQTSQGTNLEERRKNSIWELFSHDVRARTLLAAFMMGMQQLSGIDGVLYYAPLLFQQAGLTSSEASLLASGVSAVAIFSVTIPALIWADGWGRRHSTIYGGIGLGIIMFLIGSLYASNTVHGTYGAGRWLVIVSIYLFAMLYSLSWGVGIKIYAAEIQPQRTRAAATSLAHGSNWIANFLVALTTPMLLASSTFGAYFLFGGCSVLTAVVCAVFMPETRGRSLEEIEEAFKRTSASKRLARAVQKFSGRAEV bitunicate_ascomycetes Talaromyces_stipitatus_ATCC_10500 Talaromyces_stipitatus_ATCC_10500 XM_002340869 1..1485 Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_Galinsky,K.J.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W.C. NA 0:1485 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002990113).COMPLETENESS:_incomplete_on_the_5_end. NA 02-JUL-2009 Talaromyces_stipitatus_ATCC_10500_MFS_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Talaromyces_stipitatus_B8LT15_TALSN.gb Talaromyces 242765120 Submitted_(01-OCT-2007)_J._Craig_Ventor_Institue,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002340869 NA NA green_and_blue_molds sac_fungi NA 1485 NA mRNA NA ATCC_10500 NA Talaromyces_stipitatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Talaromyces Direct_Submission NA XM_002340869.1 ATGATCTCGCGTCGCCTTCCGCCAAAGTATGTCCTTGCGAGCATACTGTGCTCCTTTGGCGGGGTTCTCTTTGGAATGGACACCGGTGTCATTGGCCCCGTAACAATCATGCACAGCTACATTGCAAGTTTCGGTTTCGTATCATCTACCGTTCATGGTCTAATTGTCTCTTCTATCCTCATCCCGGCCGCCATCTCGTCATTCTTTGCGGGAAAAGTTGCAGATATCCTTGGTCGACCCAAGGGCATCAGTTTAGGAGCCTTTATATTCGGACTTGGAGCTGCTCTTGAGGCTGGTGCTGCTCATCTTTCCATGTTTATTGTTGGAAGGTGTATTGAGGGCATTGGCGAGGGATTGTATCTGGGTACATTGGTTGTGTATATATGTGAAATATCACCACCTAGCAAAAGAGGACCACTTACATCCACTCCCCAACTACTAATCACCCTCGGTCTTTGCGTGGGCTTCTTCGTGTGCTATGGTTCTGCTACTGTCAACTCATCCCTGTCATGGAGACTACCATTTGCCATTCTATCTGCTTTGGCATTATCATTTTCTTTAGCTTCGTTATGGCTTCCACCCTCTCCACGTTGGCTTTCGCTTCGAGGTCGTACGGCAGAAGCTATCGCCACCTGGGACATTTTGGGGGTCAGTCACGCAGAACGTGAAAAGATTGAGATCGCAGAAGGAATTCTTGAAATTGCGAATCCGGAAGAAGCGTCACACCCTCAGACTTCGCAGGGTACCAATCTGGAAGAAAGAAGGAAGAATAGTATCTGGGAATTGTTCTCTCACGATGTACGTGCTCGCACATTGCTTGCAGCCTTTATGATGGGAATGCAGCAACTCAGTGGTATTGATGGTGTTCTTTACTACGCACCCCTCCTCTTCCAACAAGCCGGCCTCACATCCTCCGAAGCCTCCCTACTAGCCTCCGGAGTCTCCGCCGTGGCCATCTTCAGCGTCACCATCCCCGCTCTGATCTGGGCCGATGGCTGGGGACGCCGCCACAGCACGATCTACGGCGGCATCGGTCTCGGTATCATCATGTTTCTGATTGGCAGTCTATACGCCAGCAACACCGTACACGGCACTTACGGCGCCGGAAGATGGTTAGTAATCGTCTCAATCTACCTCTTCGCAATGCTCTACTCCCTCTCCTGGGGCGTAGGCATAAAAATCTACGCCGCCGAAATCCAACCCCAACGCACACGTGCCGCGGCCACCAGTTTGGCGCACGGAAGTAACTGGATCGCGAATTTTTTGGTTGCATTGACTACGCCGATGTTGTTGGCAAGTAGTACTTTTGGGGCTTATTTCTTGTTTGGTGGATGCTCAGTTTTGACCGCGGTGGTTTGTGCGGTTTTTATGCCGGAGACGAGGGGACGGTCGTTGGAGGAGATTGAGGAGGCGTTTAAGAGGACATCTGCGTCGAAACGGTTGGCGAGAGCTGTGCAGAAGTTTTCTGGACGGGCTGAGGTCTGA > 1134 TSTA_070660 encoded_by_transcript_TSTA_070660B MFS_myo-inositol_transporter,_putative XP_002341044.1 NA MEHNDADQPLLADDSHTHSDAQYESSGVSAEGLGGLFIWALTFAAGISGLLFGYDTGVISATLVSIKTDLSGKLLTTMDKSIITSCTSLFALFASPLAGVYADSIGRKKVLLVADVLFTIGALCQAFTSTVLGMVLGRSLVGLAVGSASMVSSLYISELAPSHLRGRLVTILCLFITAGQVVAYIIGWLFSSTPGDWRWIVGLGAIPAILQLMTLLFLPESPRWLVQAGYIAEAKAVLIKVFGSDSQAGYKASAVLRAIEEDVAAEAAQLSHNKSDSNFQRALRTMAELCSIDGNRRALIIAMMLQGLQQLCGFNSLMYFSATIFESLSFSSPTLTSLTVAGTNFLFTLLAFSLIDCVGRRRILLYSIPFMITALLGCALAFSHLRWVHSVSSPKDGQSQPSSSASSMSVAILICLTVYTAAYASGIGNVPWQQSELFPLSVRSLGSALATATNWGSNFIVGLTFLPMMETLTPRWTFVIYALVCALGWISVWFIYPEMSGMSLEEVKDLLSDGWGVRDSVRRHESRDT bitunicate_ascomycetes Talaromyces_stipitatus_ATCC_10500 Talaromyces_stipitatus_ATCC_10500 XM_002341003 49..1638 Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_Galinsky,K.J.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W.C. NA 0:1590 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002990113). NA 02-JUL-2009 Talaromyces_stipitatus_ATCC_10500_MFS_myo-inositol_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Talaromyces_stipitatus_B8LTR4_TALSN.gb Talaromyces 242765785 Submitted_(01-OCT-2007)_J._Craig_Ventor_Institue,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002341003 NA NA green_and_blue_molds sac_fungi NA 1590 NA mRNA NA ATCC_10500 NA Talaromyces_stipitatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Talaromyces Direct_Submission NA XM_002341003.1 ATGGAGCACAACGATGCAGACCAGCCACTTTTGGCAGACGACAGTCATACCCACAGCGATGCTCAATATGAGTCTTCGGGCGTGTCTGCCGAAGGACTAGGTGGCCTGTTTATATGGGCTCTTACCTTTGCTGCAGGAATAAGTGGTCTGCTTTTCGGTTATGACACTGGTGTCATTTCTGCCACTCTTGTCTCTATCAAGACAGACCTTTCAGGAAAACTTCTGACGACCATGGACAAGAGTATCATTACTTCGTGCACTAGTCTATTCGCCCTTTTTGCTAGTCCCTTGGCTGGTGTTTATGCCGATAGCATTGGGCGGAAGAAAGTTCTGCTGGTGGCAGATGTTCTTTTCACGATTGGTGCACTATGTCAAGCATTTACTTCTACTGTTCTTGGCATGGTTCTTGGACGTAGTCTTGTTGGACTGGCGGTGGGTTCTGCTAGCATGGTTTCATCGTTATATATATCTGAACTTGCGCCATCGCATTTGCGGGGAAGACTAGTTACGATACTATGTCTCTTCATCACTGCAGGTCAAGTCGTTGCGTACATAATCGGTTGGCTGTTCTCATCAACCCCTGGAGACTGGCGCTGGATTGTCGGCCTAGGCGCGATTCCCGCGATTTTGCAGCTTATGACTCTCCTTTTCCTACCGGAATCACCTCGATGGCTCGTACAGGCCGGCTACATTGCTGAAGCGAAGGCGGTCCTGATCAAGGTTTTTGGTTCAGACTCGCAGGCTGGATACAAGGCCAGTGCCGTGTTGCGAGCTATCGAAGAAGACGTCGCTGCTGAAGCAGCCCAACTCAGTCATAACAAATCCGACAGTAACTTTCAGCGAGCTTTGCGGACTATGGCCGAACTTTGCAGCATTGACGGCAACAGACGCGCGCTCATCATTGCTATGATGCTGCAGGGTCTTCAGCAGCTGTGTGGTTTCAACAGCTTGATGTACTTCTCTGCCACGATTTTTGAGTCTCTCTCGTTCTCTTCTCCAACACTTACATCCTTGACAGTCGCCGGGACCAACTTTTTGTTTACGTTACTAGCGTTCTCGCTCATTGACTGTGTAGGTCGTCGACGTATTCTTTTGTACTCTATTCCTTTTATGATTACTGCGTTGCTTGGATGTGCCTTGGCCTTCTCACACCTGAGATGGGTACATTCAGTGTCCTCACCCAAAGATGGTCAATCTCAGCCATCGTCAAGTGCATCTTCCATGTCTGTTGCCATTCTGATTTGTCTTACTGTATACACAGCAGCGTATGCGTCAGGTATTGGGAATGTTCCTTGGCAACAATCGGAATTGTTTCCCCTTTCTGTTCGCTCTCTTGGATCAGCTTTAGCTACGGCTACGAATTGGGGGTCCAACTTCATCGTGGGTCTGACTTTCTTGCCTATGATGGAGACATTGACTCCAAGATGGACATTTGTCATTTACGCGTTAGTGTGTGCTCTTGGTTGGATTAGTGTATGGTTCATTTATCCTGAAATGAGTGGTATGAGTCTTGAGGAAGTCAAGGACCTGTTAAGTGATGGTTGGGGTGTCAGGGATAGTGTCAGAAGACACGAGTCCCGAGATACATGA > 1135 TSTA_072160 encoded_by_transcript_TSTA_072160A sugar_transporter,_putative XP_002341210.1 NA MGKGIYSFITSTVHHVPTLPRSGANAADTLGLNHLSLRQSFSVRLALAVLLIAQFSFGFDQQGYSSTQAMASFKNQFGSYNAKMKKYTLDTLHILGAGRRYGGRMCMFCMSIRAIICATIPHHPEDVRPDFGWSCAKLIGIPTDIYIGMELSVVSIFQSEIVPSHACGFVVGTYQSSSYRKAYMIPYGLFYLVPTPVVTLIWFIPEENSSFLDIFRGSNLRRTLVVCGTNFFLQSTGQISTSLYGALFVSDLGTVSPFIVTVIIAISNLTASGIAMILTDRIGRRALILIGASIQVTSQMTMGSLGNANPFTKSEKAGVVAMMVTRLWIQCWLGSRCTYSQCRISQQSGSRYDLSNCFGPQHCRVSAFIFASIAFVSIGIRTSFQMLLGGHWRKSTSCLRATPHCGSLQKLNFGVKETILRINKHEIQIL bitunicate_ascomycetes Talaromyces_stipitatus_ATCC_10500 Talaromyces_stipitatus_ATCC_10500 XM_002341169 NA Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_Galinsky,K.J.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W.C. NA 0:1293 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002990113).COMPLETENESS:_incomplete_on_both_ends. NA 02-JUL-2009 Talaromyces_stipitatus_ATCC_10500_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Talaromyces_stipitatus_B8LTZ3_TALSN.gb Talaromyces 242766632 Submitted_(01-OCT-2007)_J._Craig_Ventor_Institue,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002341169 NA NA green_and_blue_molds sac_fungi NA 1293 NA mRNA NA ATCC_10500 NA Talaromyces_stipitatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Talaromyces Direct_Submission NA XM_002341169.1 ATGGGGAAAGGTATATATAGCTTCATTACCTCCACTGTTCACCATGTTCCCACGCTTCCAAGGTCAGGAGCAAATGCAGCAGATACGTTGGGCCTAAACCATCTTTCTCTGAGGCAAAGCTTCAGTGTGAGGCTCGCCCTCGCGGTGCTGTTGATTGCCCAGTTCAGCTTTGGATTCGACCAACAGGGCTATTCGTCCACTCAGGCCATGGCTTCTTTCAAGAATCAGTTTGGCTCGTACAATGCAAAGATGAAGAAATATACTTTGGATACACTGCATATTCTTGGGGCAGGCCGCAGATACGGCGGACGCATGTGCATGTTCTGCATGAGTATTCGGGCAATCATCTGTGCAACCATCCCCCATCACCCCGAGGACGTCCGACCAGATTTTGGTTGGTCGTGTGCCAAGCTTATTGGCATTCCAACAGACATCTACATCGGCATGGAGCTATCGGTAGTTTCTATCTTCCAATCCGAGATCGTCCCTTCTCATGCCTGCGGTTTTGTTGTCGGGACCTACCAAAGCAGTTCATATAGAAAAGCGTACATGATCCCATATGGATTGTTCTATCTCGTCCCAACACCAGTTGTGACACTTATTTGGTTCATCCCTGAGGAAAATAGTTCCTTTCTTGATATCTTCCGCGGATCGAACCTGAGACGTACTCTGGTCGTATGCGGTACTAATTTCTTCCTCCAATCCACTGGTCAAATAAGTACTTCTCTTTATGGAGCTCTGTTCGTCTCGGACCTTGGGACGGTCAGTCCATTCATCGTAACCGTTATAATTGCTATTTCAAATCTAACTGCATCGGGAATTGCGATGATTCTTACGGATCGAATTGGTCGAAGGGCTCTCATCTTGATTGGTGCCTCTATCCAGGTTACCTCGCAAATGACCATGGGCAGTTTAGGTAATGCCAACCCATTCACTAAAAGCGAGAAGGCTGGCGTGGTCGCGATGATGGTTACCCGCCTTTGGATACAGTGTTGGTTGGGCAGCAGGTGCACATATTCTCAGTGTAGAATTTCCCAGCAATCAGGCTCGAGATATGACTTGTCGAACTGCTTCGGTCCTCAACATTGCCGTGTATCGGCTTTTATATTTGCATCCATTGCATTTGTCTCGATTGGTATACGTACTTCATTCCAAATGTTGCTGGGTGGTCATTGGAGGAAGTCAACGAGCTGTTTGAGAGCGACACCCCATTGCGGAAGTCTTCAAAAGTTAAACTTCGGAGTGAAGGAGACCATTCTGAGGATTAATAAGCATGAGATTCAAATATTATAA > 1136 TSTA_032770 encoded_by_transcript_TSTA_032770A MFS_sugar_transporter,_putative XP_002480458.1 NA MARKYWGGSGDALTVWISIAASTVIIFYGYDQGVFGNVIIGENFLKTMNYPSSNMQATMTSVYNLGCFVGAMSTIWTGDIFGRPRQVIIGSTVIAIGAVIQTASFSVAQMMVGRVVAGLGTGMNTATAGVWQAETSKMRSRGKLIIIQMANCISGFSLSNWLTLGFSFLSGSVAWRFPLAFQIFFTLVIYILCPFLPDSPRLLIRKGKYDEAREVIAALQGGGATPDSPSVMSQFNIIKDILDREHVATYTWFQLLTGRGPSGVLRRMILGAWMQAMNQISGINITSYYMSYVFINALGISELLARILAAAGSVDYLFFSCLAYFIIERYGRRKVMMYSAAACCTCWVVIAIVLAISDTGRGDSYKLGIVAVSFFFVFFASFGLGVLGVPWLYPTEINALEMRTKGSSLAMATNWIMNYMVVQVTPPGIANLGWKFWIIWAIICFSFIPVTYLFYPETANRTLEDIDRFFETKPGIIVAWNKTATQLERPEEYIRMDEEIERLGAANNEKLSDNDEKTPQVIDSETDHREHV bitunicate_ascomycetes Talaromyces_stipitatus_ATCC_10500 Talaromyces_stipitatus_ATCC_10500 XM_002480413 1..1599 Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_Galinsky,K.J.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W.C. NA 0:1599 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002990115).COMPLETENESS:_incomplete_on_the_5_end. NA 02-JUL-2009 Talaromyces_stipitatus_ATCC_10500_MFS_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Talaromyces_stipitatus_B8M862_TALSN.gb Talaromyces 242784762 Submitted_(01-OCT-2007)_J._Craig_Ventor_Institue,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002480413 NA NA green_and_blue_molds sac_fungi NA 1599 NA mRNA NA ATCC_10500 NA Talaromyces_stipitatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Talaromyces Direct_Submission NA XM_002480413.1 ATGGCCCGGAAATACTGGGGAGGCTCCGGCGATGCCCTCACCGTATGGATCTCCATCGCCGCTTCGACGGTCATCATCTTCTACGGTTATGACCAGGGCGTCTTCGGAAACGTCATCATAGGCGAAAACTTCCTCAAAACAATGAACTACCCCTCCTCCAATATGCAAGCAACAATGACCTCCGTGTACAATCTCGGCTGTTTCGTAGGCGCCATGTCGACCATCTGGACTGGTGATATATTCGGTCGACCGCGTCAGGTCATTATCGGAAGTACGGTGATTGCCATCGGTGCTGTGATACAGACTGCTTCTTTTAGTGTCGCGCAGATGATGGTTGGAAGGGTTGTTGCTGGTTTGGGGACCGGAATGAATACAGCTACCGCCGGTGTATGGCAGGCCGAAACTAGCAAGATGCGCAGTAGAGGAAAGCTGATTATCATCCAAATGGCAAACTGTATCTCCGGCTTCTCACTCTCCAACTGGCTCACACTGGGATTCTCCTTCCTCTCCGGGAGTGTGGCATGGCGATTCCCACTCGCTTTCCAGATCTTCTTCACGCTGGTCATTTATATTCTCTGCCCATTCCTACCTGATTCCCCACGTCTTCTGATCCGCAAGGGAAAATACGACGAAGCGCGAGAAGTCATTGCTGCTCTTCAAGGTGGAGGCGCAACACCTGATTCTCCATCGGTCATGTCGCAGTTTAATATTATCAAGGATATTCTTGATCGTGAGCATGTAGCGACTTATACATGGTTTCAACTACTTACGGGACGAGGCCCCTCCGGCGTCCTCCGTCGCATGATCCTCGGCGCCTGGATGCAAGCCATGAACCAAATCTCCGGCATAAACATCACAAGCTACTACATGTCCTACGTCTTCATCAACGCCCTGGGCATAAGCGAATTACTTGCCCGCATCCTCGCCGCAGCCGGCAGTGTCGATTACCTCTTCTTTTCGTGTCTCGCATATTTCATCATTGAGCGATACGGCCGTCGAAAAGTCATGATGTATTCTGCTGCCGCGTGTTGTACGTGTTGGGTCGTGATTGCCATTGTACTCGCAATCTCGGATACGGGGAGAGGCGATTCGTACAAATTGGGTATTGTGGCTGTTTCGTTTTTTTTTGTGTTTTTTGCTAGTTTCGGATTGGGGGTTTTGGGTGTTCCCTGGCTCTATCCAACCGAAATCAACGCCCTCGAAATGCGCACAAAGGGCTCGTCTTTAGCAATGGCCACAAACTGGATAATGAACTATATGGTCGTCCAAGTGACACCACCGGGAATCGCAAATCTCGGCTGGAAATTCTGGATTATTTGGGCTATTATCTGCTTCAGTTTTATCCCTGTCACATACTTGTTCTATCCCGAAACGGCAAATAGGACGTTGGAGGATATCGATCGGTTCTTTGAGACGAAGCCGGGTATTATTGTTGCTTGGAATAAGACGGCCACTCAACTCGAGAGACCAGAGGAATATATCCGTATGGATGAGGAGATTGAGCGATTGGGAGCGGCGAATAACGAGAAGTTATCTGATAATGATGAGAAGACGCCACAAGTAATTGATTCGGAGACTGATCATCGGGAGCATGTCTAA > 1137 TSTA_119700 encoded_by_transcript_TSTA_119700A MFS_sugar_transporter,_putative XP_002482202.1 NA MAEGAGFQPAPAGHSSAYADSRLSQQRLNGLTENTTGEIKNPLVGIPKSQLMVDVEAYADHYQLNGILPLLKKGALVAQNPRGIENIEELDEADRQALRQEVTHRWKQPKTLYFTILLNSIAAAIQGWDQEGSNGANLTFQESLGISEKSPGPCDLDGTCDRNLWLVGVINSTPYLIIAILIAWIADPLNHWLGRRGVIFLGAIFSVVSPIGSALVKTWPQLVICRCLLGTGMGLKEVTVPVFSAENAPTSIRGGLIMSWQLWTAFGIFCGVGANLALVNTGDIAWRLQLGSAFIPAVPLMLGVWFCPESPRWLMTKKRHDKAYKSLLSLRNTPLQAARDLYFIHAQLVQEGLMLEAGGFSKNASMFTRFIELWTIPRNRRAAQASGVVMVAQQMCGINIIAFYSTSIFAQAGASNLGALLASFGYGSINFIFAWPAVWTIDTFGRRALLLFTFPNMCWTLLAAGFCFWIPTESKAHIAMIALFVYVFAMFYSPGGGPVPFCYSAEVFPLSHREIGMSWAVASNNFWGFWLGVTFPYMLRALQPLGAIGFYAGLNLVALVLIFLFVPETKQRSLEELDYVFAVTTRRHASYQLFTVLPWWIKRYILRRKYLVCPELYKTDLDEYHYSSHTSTVLQDSNKSGTEASAYQTQSV bitunicate_ascomycetes Talaromyces_stipitatus_ATCC_10500 Talaromyces_stipitatus_ATCC_10500 XM_002482157 1..1959 Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_Galinsky,K.J.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W.C. NA 0:1959 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002990116).COMPLETENESS:_incomplete_on_the_5_end. NA 02-JUL-2009 Talaromyces_stipitatus_ATCC_10500_MFS_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Talaromyces_stipitatus_B8MBS7_TALSN.gb Talaromyces 242793625 Submitted_(01-OCT-2007)_J._Craig_Ventor_Institue,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002482157 NA NA green_and_blue_molds sac_fungi NA 1959 NA mRNA NA ATCC_10500 NA Talaromyces_stipitatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Talaromyces Direct_Submission NA XM_002482157.1 ATGGCTGAGGGTGCAGGATTTCAACCAGCACCAGCTGGGCATAGCTCTGCTTATGCAGACAGCCGGTTGTCTCAGCAGCGTCTTAATGGTCTGACTGAGAATACCACCGGAGAAATCAAGAATCCTCTTGTGGGCATTCCAAAGAGCCAGCTCATGGTAGATGTTGAAGCGTATGCCGACCACTATCAGCTCAACGGCATCCTCCCACTTCTCAAGAAGGGTGCCCTGGTCGCTCAGAACCCCAGGGGAATTGAGAACATTGAGGAGCTTGATGAAGCCGATCGTCAGGCTTTGCGCCAGGAGGTCACCCATCGTTGGAAGCAGCCAAAGACCTTGTACTTCACGATCCTTCTCAACTCCATCGCTGCTGCTATCCAAGGTTGGGATCAGGAAGGCTCCAACGGTGCAAACTTGACTTTCCAGGAGAGCCTCGGAATTTCTGAGAAGTCCCCTGGACCTTGTGACCTGGATGGCACCTGTGACCGTAATCTGTGGCTCGTCGGAGTGATCAACTCTACCCCTTACTTGATTATCGCTATCTTGATTGCCTGGATCGCTGACCCGTTGAATCATTGGCTTGGTCGTCGCGGCGTCATCTTTCTCGGCGCTATCTTCAGTGTTGTCTCACCTATCGGCTCTGCTCTCGTTAAAACATGGCCTCAACTTGTCATTTGTCGTTGTCTTCTTGGTACTGGCATGGGTCTTAAGGAAGTCACAGTCCCTGTGTTCTCCGCTGAGAACGCTCCTACCAGCATTCGTGGAGGGCTCATTATGTCCTGGCAGTTGTGGACTGCATTCGGTATCTTCTGTGGCGTTGGCGCCAATCTGGCTCTTGTCAACACAGGAGACATCGCCTGGCGACTGCAATTAGGCTCTGCCTTCATCCCCGCTGTTCCACTTATGTTGGGAGTCTGGTTCTGCCCTGAATCTCCTCGTTGGCTCATGACCAAGAAGCGACATGACAAGGCCTACAAATCTCTGCTTAGTCTACGAAATACTCCCCTCCAGGCCGCACGCGACTTGTACTTCATCCATGCTCAGCTGGTCCAAGAAGGACTTATGTTGGAAGCAGGTGGATTCTCCAAAAATGCCAGCATGTTCACTCGTTTTATCGAGTTGTGGACTATTCCACGTAATCGTCGTGCCGCCCAGGCATCTGGTGTTGTCATGGTCGCCCAACAGATGTGTGGAATCAACATTATTGCTTTCTACTCCACAAGCATCTTCGCCCAGGCAGGAGCAAGCAATCTCGGTGCTTTGCTTGCTTCTTTTGGCTATGGATCCATCAACTTCATATTCGCCTGGCCTGCTGTCTGGACAATCGATACATTTGGTCGACGAGCTCTCCTGCTTTTCACCTTCCCCAACATGTGTTGGACACTGCTTGCCGCTGGGTTCTGCTTCTGGATCCCAACTGAAAGCAAAGCCCACATCGCAATGATTGCCCTTTTCGTTTACGTTTTCGCAATGTTTTATTCTCCAGGCGGAGGGCCTGTGCCTTTCTGTTATTCCGCAGAGGTGTTCCCACTGTCTCATCGTGAAATTGGCATGTCCTGGGCTGTCGCCTCCAACAACTTCTGGGGTTTCTGGTTGGGAGTTACATTTCCCTACATGCTTCGAGCATTGCAGCCACTCGGTGCAATTGGATTCTATGCGGGCCTGAACCTTGTCGCTCTTGTGTTGATCTTCCTTTTTGTTCCGGAGACCAAGCAACGTTCTCTTGAAGAACTAGACTATGTCTTTGCCGTGACCACTCGCCGTCACGCGTCGTATCAATTGTTCACGGTTCTCCCATGGTGGATCAAGCGATACATCCTTCGCCGCAAGTATTTGGTTTGCCCTGAGCTTTACAAGACTGACTTGGACGAGTACCACTATTCGAGTCACACTTCAACTGTCTTGCAAGATAGCAACAAGTCTGGGACAGAGGCCAGCGCATATCAAACTCAGTCGGTTTGA > 1138 TSTA_012610 encoded_by_transcript_TSTA_012610A MFS_alpha-glucoside_transporter,_putative XP_002483387.1 NA MATDDKLVVETTNPTDEKGLSSQDISLEKPSSMDRLIADAKAATDKEHKMTLLQGIRLYPKAVFWSILISSCIVMEGYDISLVGNLYGFPAFNRKYGELGADGTYQIPARWQSGLSNGAAVGEIIGLFINGYVSERFGYRYTVMSCLVLIAAFTAIFFTAQNVQTLLAAEILCGVPWGVFQTLTVTYASEVCPVALRSYLTCYVNVCWGIGQVIGVGVIKAMLNRDDQWAYRIPYALQWMWPLPLFIGVWFAPESPWWLVRRGRVEDAKKALLRLTSLNKETNFDANETIAMMVHTTALEQKITSGASYWDCFKGTDRRRTEIVCMVWAIQNLSGNSFSNYSTYFLEQAGLSSSDSYSFALGQYGINIVGVFGAWALMAWGVGRRSLYLFGLCGLFSMLFVMGFLGLVPASHRTQGALATGSMMIIWALFYQCSVGTVCYSLVSELSTRRLQIKSVVLARNLYNVVGIITGVLTPYMLNPTAWNWSNYAGFFWAGLCFLCIVYTYFRVPEPSGRTFAELDALFEKGVSARQFASTQINVFEEEVDKGVGDTYKDVFEHEMKC bitunicate_ascomycetes Talaromyces_stipitatus_ATCC_10500 Talaromyces_stipitatus_ATCC_10500 XM_002483342 259..1947 Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_Galinsky,K.J.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W.C. NA 0:1689 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002990117). NA 02-JUL-2009 Talaromyces_stipitatus_ATCC_10500_MFS_alpha-glucoside_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Talaromyces_stipitatus_B8MF54_TALSN.gb Talaromyces 242799474 Submitted_(01-OCT-2007)_J._Craig_Ventor_Institue,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002483342 NA NA green_and_blue_molds sac_fungi NA 1689 NA mRNA NA ATCC_10500 NA Talaromyces_stipitatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Talaromyces Direct_Submission NA XM_002483342.1 ATGGCCACCGACGACAAACTCGTCGTCGAAACCACCAACCCGACCGACGAAAAAGGACTCTCCTCTCAAGATATCTCCCTCGAAAAACCATCCTCAATGGACCGCCTAATCGCCGACGCAAAAGCCGCCACCGACAAAGAACACAAAATGACTTTACTTCAGGGAATCAGACTATATCCCAAAGCCGTGTTTTGGAGTATACTGATTTCCTCGTGTATTGTTATGGAAGGGTATGATATTAGTCTTGTGGGGAATTTGTATGGGTTTCCGGCTTTCAATAGGAAGTATGGGGAGCTGGGTGCTGATGGGACGTATCAGATTCCTGCTAGGTGGCAATCGGGTTTGAGTAATGGTGCCGCGGTGGGGGAAATTATTGGATTATTTATTAATGGTTATGTCTCGGAACGATTTGGATATCGATATACCGTCATGAGCTGTTTGGTTCTGATTGCGGCGTTTACGGCAATCTTCTTCACAGCTCAGAATGTGCAAACCCTGCTAGCCGCCGAGATTCTCTGCGGTGTTCCATGGGGGGTCTTCCAGACATTGACCGTCACGTATGCATCTGAAGTCTGCCCCGTGGCTCTACGAAGCTATTTGACATGCTACGTCAACGTGTGCTGGGGAATCGGCCAAGTCATCGGAGTAGGCGTGATCAAAGCCATGCTCAATCGCGACGATCAATGGGCATATCGCATCCCGTACGCCCTGCAATGGATGTGGCCACTACCTTTATTCATCGGAGTCTGGTTTGCACCTGAATCACCCTGGTGGCTCGTCCGCAGAGGTCGCGTCGAAGACGCAAAAAAAGCCCTTCTCCGATTGACCAGTCTGAACAAAGAGACCAATTTTGATGCAAACGAGACTATCGCCATGATGGTCCACACCACCGCCTTGGAACAGAAAATCACCTCTGGCGCGAGTTACTGGGATTGTTTCAAGGGCACCGACCGCCGTCGTACGGAGATTGTATGCATGGTCTGGGCTATTCAGAATCTCAGCGGAAATTCATTCTCAAATTATTCCACATATTTCCTCGAACAAGCCGGTCTGAGCTCGTCGGATTCCTACTCTTTTGCTCTGGGCCAGTACGGTATCAACATAGTCGGCGTATTTGGTGCCTGGGCTCTGATGGCATGGGGTGTCGGTCGTCGATCACTCTATCTCTTTGGTCTATGCGGTTTGTTCTCCATGTTGTTCGTCATGGGATTTTTGGGTCTTGTCCCCGCATCACATCGTACCCAGGGCGCACTCGCCACGGGATCAATGATGATTATTTGGGCTCTTTTCTATCAATGCTCCGTCGGAACAGTGTGCTACTCCCTCGTCTCGGAACTTTCCACCCGTCGTCTGCAGATCAAATCCGTCGTCCTCGCCAGAAACTTATATAACGTTGTCGGAATTATCACGGGAGTCTTGACACCATATATGCTGAACCCCACGGCATGGAACTGGAGTAACTATGCCGGCTTCTTCTGGGCTGGATTGTGTTTCTTGTGTATTGTATACACTTATTTCCGTGTCCCCGAACCCAGTGGTCGCACGTTTGCTGAGTTGGATGCTCTATTTGAGAAAGGGGTTAGTGCGAGGCAGTTTGCGTCGACGCAGATTAATGTCTTTGAGGAGGAGGTTGATAAGGGCGTCGGTGATACTTATAAGGATGTTTTTGAGCACGAGATGAAATGCTAG > 1139 TSTA_014070 encoded_by_transcript_TSTA_014070A sugar_transporter,_putative XP_002483544.1 NA MAPSAATGADIDSELFANVNNNTHQLWWKDPGLRRLNIVLLSTFLGPIANGYDISLISGLNAIPQWFEDLSGLEDASTSGLLIAVADRLGRRWGIIIGGISTIAPVIGQSFCKTAVYHAPIEDRTSAVAGVLFNTFFFVGSITDAWASFGSHYLNTRLRHIYSGVSALPINNNRPGEARKIPARFHANGNETDELVVIEFSEICASTEISRNTKVSWASLFATPGNRRRVSEDLPGLGLGLATQWVGNSNISYYFVPVLETVGISDPTKQQGVNGGLQVYSWILAICGAPLAERCGRRRLFLVSACTMLLFMILVLAWSAVFANTGNPASGAAVIVFLFLFLGWIRYRIYTDSNPLRQRNMAH bitunicate_ascomycetes Talaromyces_stipitatus_ATCC_10500 Talaromyces_stipitatus_ATCC_10500 XM_002483499 NA Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_Galinsky,K.J.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W.C. NA 0:1092 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002990117).COMPLETENESS:_incomplete_on_both_ends. NA 02-JUL-2009 Talaromyces_stipitatus_ATCC_10500_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Talaromyces_stipitatus_B8MGS9_TALSN.gb Talaromyces 242800229 Submitted_(01-OCT-2007)_J._Craig_Ventor_Institue,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002483499 NA NA green_and_blue_molds sac_fungi NA 1092 NA mRNA NA ATCC_10500 NA Talaromyces_stipitatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Talaromyces Direct_Submission NA XM_002483499.1 ATGGCTCCTTCTGCAGCGACTGGAGCCGATATTGACTCTGAGCTATTTGCAAATGTCAACAACAACACCCATCAACTGTGGTGGAAGGACCCCGGCCTCAGAAGGCTCAATATAGTTCTTCTATCCACCTTTCTTGGACCCATAGCCAACGGCTATGATATCTCGCTCATATCCGGGCTTAATGCTATTCCGCAATGGTTCGAGGACTTAAGTGGACTCGAAGACGCGAGCACGTCGGGACTCCTAATAGCGGTGGCTGACCGACTGGGCCGCCGATGGGGAATCATTATCGGAGGCATTAGCACAATTGCACCCGTCATAGGCCAGTCTTTCTGCAAGACAGCGGTCTATCATGCTCCTATTGAAGATCGCACATCCGCAGTCGCCGGAGTCCTCTTCAATACATTTTTCTTCGTTGGCTCCATCACGGATGCGTGGGCTTCTTTTGGAAGCCACTATCTCAACACTCGTCTTCGTCATATTTATTCCGGAGTCTCCGCGCTGCCCATAAACAACAATCGGCCTGGAGAAGCGAGGAAGATCCCGGCGAGGTTTCACGCCAACGGCAATGAGACTGACGAGCTTGTTGTGATTGAATTCTCAGAGATCTGCGCTTCCACCGAAATCTCGCGAAACACAAAGGTCAGCTGGGCCTCATTGTTTGCCACCCCTGGTAATCGGAGGCGCGTCTCTGAAGATCTGCCTGGGCTGGGCCTGGGCCTCGCGACCCAGTGGGTCGGCAACAGCAATATAAGCTACTACTTCGTCCCTGTACTGGAAACAGTCGGGATCTCCGATCCAACCAAGCAACAGGGAGTCAACGGCGGTCTGCAGGTATATAGCTGGATACTTGCAATCTGTGGCGCTCCACTCGCTGAGCGTTGCGGACGTCGAAGACTCTTCCTGGTGTCCGCCTGCACCATGCTGTTATTTATGATTCTTGTCCTGGCATGGTCGGCCGTCTTCGCCAACACGGGGAACCCCGCGTCCGGCGCTGCAGTCATTGTATTCCTCTTCCTGTTTCTGGGTTGGATACGTTATAGGATTTACACCGATTCCAATCCTCTACGTCAACGAAATATGGCCCACTGA > 1140 TSTA_100820 encoded_by_transcript_TSTA_100820B MFS_sugar_transporter,_putative XP_002486079.1 NA MTPTSQTNGEPLSDGGFKYLVKNPYLFGVALFSTLGGLLFGYDQGVISGILTMESFGARFPRIYTDSNFKGWFVSTLLLAAWFGSLCNGPVGDRLGRKASMLIAVVIFIVGSTVQCGAMNIPMLFAGRAVAGLAIGQLTQIVPLFISEISVPEVRGSLVVLQQLSITIGILISFWIDYGSNYIGGTRCAPSIPYTGGPPSKRTFNPYTDIPANKKCTNQSEASWRLPFALQIIPALALGVGMLFFPDSPRWLLMHERDDDAIETLCKLRRRASRDDPEVIKEYLEIKAQIMLENSFARDKWPNLSGLRLEVAQYISLVSTWARFKRLAIGCVVMFFQQFMGCNAMIYYAPTIFSQLGLDGNTTSLLATGVYGIINSLSTLPALIFIDKVGRRPLLMCGAIGTCISLVIVAGIIGAYGSALVNQKSAGWAGIAFIYIYDVNFSYSFAPIGWVLPSEIFNLSIRSKAISITTSATWMCNFIIGLVTPDMLSSITWGTYLFFAVFCLIAFAFTYFVIPETRGKVCTFL bitunicate_ascomycetes Talaromyces_stipitatus_ATCC_10500 Talaromyces_stipitatus_ATCC_10500 XM_002486034 275..1852 Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_Galinsky,K.J.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W.C. NA 0:1578 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002990119). NA 02-JUL-2009 Talaromyces_stipitatus_ATCC_10500_MFS_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Talaromyces_stipitatus_B8MMT5_TALSN.gb Talaromyces 242813011 Submitted_(01-OCT-2007)_J._Craig_Ventor_Institue,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002486034 NA NA green_and_blue_molds sac_fungi NA 1578 NA mRNA NA ATCC_10500 NA Talaromyces_stipitatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Talaromyces Direct_Submission NA XM_002486034.1 ATGACTCCAACAAGCCAGACAAATGGCGAACCGCTATCGGACGGCGGCTTCAAATATCTAGTCAAGAATCCCTATCTTTTCGGTGTTGCTTTGTTCTCAACCCTCGGCGGACTCCTCTTCGGATATGACCAAGGCGTTATTTCTGGCATTCTGACCATGGAGTCATTCGGAGCTCGATTCCCTCGAATCTATACCGATAGTAACTTTAAAGGATGGTTCGTTTCTACGCTTTTACTCGCGGCATGGTTTGGTTCTCTCTGCAACGGCCCTGTTGGAGATCGATTAGGCCGTAAGGCTTCAATGTTGATTGCAGTGGTAATCTTCATCGTGGGTTCGACGGTACAATGCGGTGCTATGAATATTCCAATGTTGTTTGCAGGGAGAGCTGTGGCTGGGCTTGCTATTGGACAGTTGACGCAGATTGTGCCTTTGTTTATTTCTGAGATCTCCGTGCCCGAGGTCAGAGGAAGTCTCGTCGTGCTGCAGCAACTATCAATCACAATCGGCATCCTAATCAGTTTTTGGATCGACTACGGCTCAAACTACATCGGCGGCACACGCTGTGCCCCTTCAATCCCTTACACAGGCGGTCCACCATCCAAACGAACCTTCAATCCCTACACCGACATCCCCGCGAATAAGAAATGCACAAACCAATCCGAAGCAAGTTGGCGTCTCCCCTTTGCACTTCAAATTATCCCCGCTCTCGCGCTCGGGGTGGGAATGCTCTTTTTCCCGGATTCGCCTCGTTGGTTACTCATGCATGAACGTGACGACGACGCAATCGAGACATTGTGTAAACTGCGTCGTCGAGCCTCAAGGGATGATCCGGAGGTGATTAAGGAATATCTCGAAATCAAAGCGCAGATTATGCTTGAGAATTCTTTTGCGAGAGATAAATGGCCGAATTTGTCTGGGTTGAGACTTGAGGTTGCGCAGTATATCTCGTTGGTGAGTACGTGGGCGCGCTTTAAGAGGTTGGCAATTGGGTGTGTGGTGATGTTTTTTCAGCAGTTTATGGGCTGTAACGCAATGATATACTACGCACCAACCATATTCTCCCAACTCGGTCTCGATGGAAACACAACCTCCCTCCTGGCCACAGGCGTATACGGCATAATAAACTCCCTCAGCACCCTTCCCGCCTTGATATTCATAGACAAAGTCGGTCGTCGCCCATTACTCATGTGCGGCGCAATCGGTACTTGTATTTCGCTCGTGATTGTGGCTGGTATTATTGGTGCTTATGGATCTGCGCTTGTAAATCAAAAGAGCGCGGGTTGGGCGGGGATTGCGTTTATTTATATTTATGATGTTAATTTCTCCTATTCGTTTGCACCCATTGGATGGGTTTTGCCTTCGGAGATTTTTAATCTTTCGATTCGATCAAAGGCGATTTCGATCACGACATCGGCTACTTGGATGTGTAACTTTATCATCGGCTTGGTTACGCCAGATATGCTTTCGTCCATTACTTGGGGGACATATCTCTTCTTCGCGGTGTTTTGTCTGATTGCTTTTGCATTCACGTACTTTGTGATTCCAGAAACAAGAGGAAAGGTATGTACATTTTTATGA > 1141 TSTA_057440 encoded_by_transcript_TSTA_057440A sugar_transporter,_putative XP_002487364.1 NA MAISPSFFRILVVGFVALGSTTYGYSSSSIFTTLGKPSFLSYFVLDMRLGAAQLEGAINELFQAGGLFRSLSCIGSADRLGRKMSILIACSVTVVGGALQAGSVHIAMYLVFRFITGLGVVPLYQSEVSPPKIHGFLVGIHGVILCLGYALAS bitunicate_ascomycetes Talaromyces_stipitatus_ATCC_10500 Talaromyces_stipitatus_ATCC_10500 XM_002487319 NA Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_Galinsky,K.J.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W.C. NA 0:462 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002990120).COMPLETENESS:_incomplete_on_both_ends. NA 02-JUL-2009 Talaromyces_stipitatus_ATCC_10500_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Talaromyces_stipitatus_B8MQA6_TALSN.gb Talaromyces 242819665 Submitted_(01-OCT-2007)_J._Craig_Ventor_Institue,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002487319 NA NA green_and_blue_molds sac_fungi NA 462 NA mRNA NA ATCC_10500 NA Talaromyces_stipitatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Talaromyces Direct_Submission NA XM_002487319.1 ATGGCCATCTCTCCTTCTTTCTTTCGCATCCTGGTCGTCGGCTTTGTCGCCCTAGGTAGCACCACCTACGGTTATAGCTCTAGCAGTATATTCACCACTCTCGGAAAACCGTCCTTCCTGTCCTATTTCGTATTGGATATGAGATTAGGTGCCGCGCAACTTGAAGGTGCCATCAATGAGCTTTTCCAAGCTGGTGGTCTGTTTCGCAGTCTGTCATGTATCGGTTCAGCTGATAGGCTAGGACGTAAAATGTCAATATTGATTGCTTGTTCGGTAACTGTCGTTGGCGGAGCTTTACAAGCTGGTAGTGTGCATATCGCCATGTATCTTGTTTTTCGGTTTATTACTGGTCTTGGTGTTGTCCCATTGTATCAGTCTGAAGTCTCTCCACCAAAAATCCATGGCTTCCTAGTCGGTATCCACGGTGTCATACTCTGTCTGGGCTACGCTCTTGCAAGCTAG > 1142 TSTA_058510 encoded_by_transcript_TSTA_058510A sugar_transporter,_putative XP_002487473.1 NA MSPSIHAKLLATNSAAIDHVEVSKAAATGWENARLTTEEEHRLTALDAIRKHYKACLWSMVISLTIVMDGYDGALLGSLVAFPSFKSHFGHFVNAKSGYQIAAHWQLALGCSSSVGNIVGIYLGAITTDRLGYKRSLLVWLTWLTGCIFISFFATHISVVFTGELLCGMSWGAFATMAPPYAAEVCPVVLRGLLEIWIVICWGIGQLLSYSVLLTLNTDTSNWAWRIPFAVQWVWPVIIFPLVIFAPESPWWLVRKGKIEAAEKVVKRLGSADITDEMVHRTVATMVETNNLEKSVHEGAGYLDCFQGRNLWRTEISCVAWAAQLWCGFVISAYSTYFFELAGLAATNAYKMSVGQGGLHILFNIIAIPIVAKVGRRRLYLAGFLWMGLILLLIGFVALSPPHTAVGYAQSTLYLLWFCGYQLTVGPVAYILVSEVSSTRLRSKTVALSRNAYNLSLLVNYFAGPYILNPTEGNWKGKTGFLTGGINIILFIWTYFRLPETQGRTFVELDILFEKKELGTKDFKSYVVDFTELSERKIPATEHEA bitunicate_ascomycetes Talaromyces_stipitatus_ATCC_10500 Talaromyces_stipitatus_ATCC_10500 XM_002487428 NA Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_Galinsky,K.J.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W.C. NA 0:1638 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002990120).COMPLETENESS:_incomplete_on_both_ends. NA 02-JUL-2009 Talaromyces_stipitatus_ATCC_10500_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Talaromyces_stipitatus_B8MQG0_TALSN.gb Talaromyces 242820233 Submitted_(01-OCT-2007)_J._Craig_Ventor_Institue,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002487428 NA NA green_and_blue_molds sac_fungi NA 1638 NA mRNA NA ATCC_10500 NA Talaromyces_stipitatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Talaromyces Direct_Submission NA XM_002487428.1 ATGTCCCCTTCCATTCACGCAAAGCTATTAGCGACCAACTCAGCAGCGATCGATCATGTCGAAGTCTCGAAAGCCGCAGCCACTGGATGGGAGAATGCTCGTCTAACCACGGAAGAGGAGCATCGCTTGACAGCCCTCGACGCTATCCGCAAGCACTACAAGGCCTGTCTTTGGTCGATGGTAATCTCATTGACTATTGTCATGGATGGCTATGATGGAGCATTGTTGGGCTCCCTCGTGGCGTTCCCATCCTTCAAGAGTCATTTTGGCCACTTCGTGAACGCAAAATCCGGGTATCAGATTGCTGCTCACTGGCAACTCGCACTGGGCTGTTCTAGTTCTGTCGGAAATATTGTCGGCATCTATCTCGGGGCTATTACGACCGATCGCTTGGGATATAAGCGATCGTTGTTGGTGTGGTTGACTTGGCTAACGGGTTGCATCTTTATCTCTTTCTTCGCTACACATATCTCTGTCGTCTTTACTGGTGAACTGCTCTGTGGTATGTCTTGGGGTGCATTTGCTACCATGGCCCCTCCGTATGCCGCCGAGGTCTGTCCCGTCGTATTGCGCGGTTTGCTTGAAATCTGGATCGTCATCTGCTGGGGTATCGGACAACTGCTCTCCTATTCCGTCCTCCTCACGCTCAACACGGACACCTCGAACTGGGCATGGCGCATCCCTTTCGCTGTACAATGGGTTTGGCCTGTGATTATCTTCCCTCTCGTTATATTTGCACCTGAATCGCCTTGGTGGCTTGTTCGTAAGGGCAAAATTGAAGCCGCCGAGAAGGTGGTCAAACGTCTGGGAAGTGCAGATATCACTGATGAAATGGTCCATCGTACCGTGGCAACGATGGTTGAGACAAATAACCTTGAAAAGAGTGTGCACGAAGGTGCAGGCTATCTGGATTGTTTCCAAGGTCGTAATCTATGGAGAACCGAGATTTCTTGCGTCGCTTGGGCAGCTCAATTGTGGTGTGGATTCGTCATTTCTGCCTATTCTACCTACTTCTTCGAGTTGGCTGGCCTCGCAGCTACGAACGCATACAAGATGAGTGTGGGCCAAGGCGGTCTTCATATCCTCTTCAACATCATCGCGATTCCTATCGTGGCGAAAGTAGGCCGCCGCCGACTTTATCTCGCGGGATTCTTATGGATGGGCCTCATATTATTATTGATTGGCTTTGTTGCACTGAGTCCACCACATACCGCCGTGGGCTACGCGCAATCCACACTATATCTGCTCTGGTTCTGCGGTTATCAGTTGACCGTCGGACCAGTGGCGTACATTCTTGTCAGTGAAGTCTCCTCTACACGTCTGCGGAGCAAGACCGTCGCGCTGTCTCGGAACGCATACAATCTATCTCTTTTGGTCAACTATTTTGCTGGTCCGTATATACTCAACCCAACAGAGGGTAACTGGAAGGGCAAGACGGGCTTCCTCACCGGTGGTATCAATATCATCCTCTTCATTTGGACGTACTTCCGGCTCCCGGAAACTCAGGGTCGCACTTTTGTAGAGCTGGATATTCTCTTTGAGAAGAAGGAACTGGGAACTAAGGATTTCAAGTCCTATGTAGTGGACTTTACGGAGCTCAGTGAGAGGAAAATACCTGCTACTGAACACGAAGCTTGA > 1143 TSTA_002350 encoded_by_transcript_TSTA_002350A MFS_sugar_transporter,_putative XP_002487823.1 NA MAPFMGLRGSRLNVATILLVVLPAYMCFGYNLAVAGGLLTMPSFIEQFPKMDTVHNSSKFNSNVQGTVVALFTVGGMLGALSTIFVGDILGRRRVIFIASALVIVGSLLMSSSYSFGQFIVARLVQGFGTGATTATVPVWQSEISGTSHRGSHVVTEGLFVSVGIAASLWIDLGFSFIDTSSVSWRVPLVLQTSLAIFVMIFIFRLPESPRWLLGKGRAEEARQILTILRDVDPDDEGVRNEIADVQKSLELVYNVSRWDIVKMGEKRNVHRLALGMTSQSFGQLCGINSLTFYATVIYDQRLHMGGTESRVLSGAMVTIQIIGALAAVFTIDRFGRRPLMLTSATGMCISMAVLAGTSSTSDNHAALIVAVVALYAFNLFYPFGFLGVPFLYSTEVAPPHLRAKISGISNCMTWLFNFVVVEVTPTGFETIGYRYYIVWAVINFAIVATVYFFFPETNARSLEEMDEIFMESRNIFDAPRIAQRLPRKLHLEDDFDEGKY bitunicate_ascomycetes Talaromyces_stipitatus_ATCC_10500 Talaromyces_stipitatus_ATCC_10500 XM_002487778 NA Fedorova,N.D.,_Joardar,V.,_Maiti,R.,_Schobel,S.,_Amedeo,P.,_Galens,K.,_Inman,J.M.,_Galinsky,K.J.,_White,O.R.,_Whitty,B.R.,_Wortman,J.R._and_Nierman,W.C. NA 0:1506 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_002990121).COMPLETENESS:_incomplete_on_both_ends. NA 02-JUL-2009 Talaromyces_stipitatus_ATCC_10500_MFS_sugar_transporter,_putative,_mRNA. NA Trichocomaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Talaromyces_stipitatus_B8MT72_TALSN.gb Talaromyces 242822141 Submitted_(01-OCT-2007)_J._Craig_Ventor_Institue,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA fungi XM_002487778 NA NA green_and_blue_molds sac_fungi NA 1506 NA mRNA NA ATCC_10500 NA Talaromyces_stipitatus NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 441959 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Eurotiales,_Trichocomaceae,_Talaromyces Direct_Submission NA XM_002487778.1 ATGGCACCCTTCATGGGCCTCAGAGGCTCTCGCCTCAATGTAGCCACTATCTTGCTGGTTGTGCTTCCAGCATACATGTGCTTCGGATACAACCTGGCTGTTGCGGGAGGGCTGCTCACAATGCCGTCTTTTATTGAGCAGTTTCCAAAGATGGATACTGTTCATAATTCGAGCAAATTCAACTCCAATGTTCAAGGCACCGTCGTCGCATTGTTTACCGTCGGAGGTATGCTAGGAGCATTGTCCACCATCTTTGTGGGTGATATCTTGGGCCGGCGAAGAGTCATATTCATTGCATCAGCCTTGGTCATCGTCGGCTCTCTTCTCATGTCGTCCTCATATTCCTTTGGACAGTTTATTGTAGCTCGACTCGTTCAGGGATTCGGAACTGGCGCTACAACTGCGACTGTGCCTGTCTGGCAGTCAGAGATATCAGGCACATCGCATCGCGGATCGCACGTCGTTACTGAAGGACTGTTCGTGTCGGTTGGTATAGCGGCCTCTCTCTGGATCGATCTGGGATTTTCTTTCATTGACACGAGCTCGGTATCGTGGCGTGTTCCTTTGGTCCTGCAAACCTCGCTTGCAATCTTCGTCATGATATTCATTTTCCGGTTACCGGAATCACCTCGCTGGCTGCTAGGTAAAGGCCGCGCTGAGGAAGCACGCCAGATCTTGACTATTCTTCGTGATGTTGATCCCGATGACGAAGGTGTGCGTAACGAAATCGCGGATGTTCAAAAGTCGCTGGAACTAGTTTACAATGTCAGCCGCTGGGATATTGTGAAAATGGGAGAGAAGCGCAATGTGCATCGGCTAGCACTGGGAATGACGAGCCAGTCATTTGGACAACTCTGCGGCATCAATTCTCTCACTTTCTATGCGACCGTCATCTACGATCAGCGGCTGCACATGGGAGGTACTGAATCACGCGTTTTGAGTGGTGCCATGGTTACTATCCAAATTATTGGCGCCCTCGCCGCTGTATTTACGATTGATCGCTTTGGTCGTCGCCCTCTCATGCTCACAAGTGCGACGGGCATGTGTATCTCAATGGCTGTTCTTGCCGGTACAAGCTCGACAAGCGATAATCACGCGGCCCTCATAGTCGCCGTGGTTGCTCTATACGCCTTCAATTTGTTCTACCCCTTCGGCTTCCTTGGTGTCCCATTTCTCTACTCGACAGAGGTAGCGCCCCCGCATCTACGCGCAAAGATTAGCGGTATCTCCAACTGTATGACCTGGTTGTTCAACTTTGTCGTTGTAGAGGTTACACCCACTGGCTTTGAGACAATCGGTTACAGATATTATATCGTTTGGGCAGTTATCAACTTTGCCATTGTCGCAACAGTTTATTTCTTTTTTCCAGAAACGAATGCGAGATCGTTAGAAGAGATGGATGAGATTTTTATGGAATCACGCAATATCTTCGACGCGCCGAGAATAGCGCAGCGCTTGCCGCGGAAATTGCATTTAGAGGATGACTTTGACGAGGGTAAATACTAA > 1144 NA NA xylose_transporter BAA31873.1 11 MKSHPLTLTQNIMNNKGLNRYVITITLIATLGGLLFGYDTAVISGAEQSIQNNLVNGVGLGSFAHGLTVSSALIGCVFGGLLSGIFSNNLGRRNSLKLAGSLFLISALGSAYPEFLFFQAGDASVGLLIVFNLYRVLGGIGVGMASGISPTYIGEIAPGKVRGSLVSWYQFAIIFGQLVVYFVNWGIATGQSPEWVNDIGWRFMFASEAIPAILFFALLFYVPETPRYLVLKNNEEKAFDVLSKINNSKEEAKDILTDIKGSLNTTETSGKLFSYGKTVVIVGVLLSIFQQFIGINVALYYAPRIFESMGAGQNASMVQTIIMGIVNVTFTYVAIRTVDKWGRRPLLLVGSIGMAIGMFAVALLAKNGVLGIWTLVFIIVYTASYMMSWGPIVWVLLSEIFPNKIRGQAMAFAVAAQWLSNFFISSTYPAMIDFSGPLTYGFYGLMCVISAIFVWKMVPETKGKTLEQLENTWL Bacillus/Lactobacillus/Streptococcus_group Tetragenococcus_halophilus Tetragenococcus_halophilus AB009593 6110..7534 Takeda,Y.,_Takase,K.,_Yamato,I._and_Abe,K. NA 0:1425 NA NA 13-FEB-1999 Tetragenococcus_halophilus_rbsC,_rbsB,_xylR,_xylA,_xylB_and_xylE_genes,_partial_and_complete_cds. NA Enterococcaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Tetragenococcus_halophilus_O82847_TETHA.gb Tetragenococcus_Collins_et_al._1993 3341900 Appl._Environ._Microbiol._64_(7),_2513-2519_(1998) NA AB009593 NA NA Lactobacillales low_GC_Gram+ 9647823 1425 NA genomic_DNA NA I-13 NA Tetragenococcus_halophilus_(Mees_1934)_Collins_et_al._1993 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 51669 Bacteria,_Firmicutes,_Lactobacillales,_Enterococcaceae,_Tetragenococcus Sequencing_and_characterization_of_the_xyl_operon_of_a_gram-positive_bacterium,_Tetragenococcus_halophila NA AB009593.1 GTGAAGTCACACCCGCTTACGCTTACTCAAAATATTATGAATAATAAAGGATTAAATCGCTATGTTATTACAATTACCTTAATTGCAACTTTGGGAGGTCTATTATTCGGTTATGATACTGCTGTTATATCTGGTGCTGAACAATCTATCCAGAATAATCTAGTTAATGGAGTAGGTTTAGGTTCCTTTGCTCACGGGTTAACAGTTTCTAGCGCACTTATTGGTTGTGTTTTTGGAGGTCTATTATCTGGAATATTTTCAAATAATTTGGGGAGAAGAAACTCTTTAAAATTAGCAGGTAGCCTCTTTTTAATTTCCGCATTGGGGTCTGCGTACCCAGAATTTTTGTTCTTTCAAGCCGGTGATGCATCAGTTGGTCTTCTAATTGTATTTAATTTATACCGCGTTCTTGGTGGTATCGGTGTTGGAATGGCTTCCGGTATATCTCCCACATATATTGGTGAAATTGCTCCTGGAAAAGTTCGTGGCAGCCTAGTTTCGTGGTATCAGTTTGCTATTATTTTTGGACAATTAGTTGTATATTTCGTAAATTGGGGAATTGCCACCGGACAATCACCAGAATGGGTGAATGATATTGGATGGAGATTTATGTTTGCTTCAGAAGCAATACCGGCTATTTTATTTTTTGCTTTGTTGTTTTATGTACCTGAAACACCTAGATACTTAGTGTTAAAAAATAACGAAGAAAAAGCTTTTGACGTTTTATCTAAAATTAACAACTCTAAAGAAGAGGCAAAAGATATATTAACTGATATTAAAGGCTCTCTAAATACAACAGAAACGAGTGGTAAGTTATTTTCTTATGGTAAAACTGTAGTCATTGTAGGTGTTTTACTCTCAATATTTCAGCAATTCATAGGTATTAACGTTGCTTTATATTATGCACCAAGAATATTTGAAAGTATGGGCGCCGGCCAAAATGCCTCGATGGTACAGACAATCATTATGGGAATTGTTAACGTGACATTTACCTATGTTGCGATAAGAACTGTAGATAAATGGGGGAGAAGACCGTTGTTGTTAGTTGGATCAATAGGGATGGCTATTGGTATGTTCGCTGTTGCGTTGCTTGCGAAAAATGGTGTGTTGGGTATTTGGACGTTAGTCTTTATCATAGTTTATACGGCCTCCTATATGATGTCGTGGGGACCGATTGTTTGGGTGTTACTTTCTGAAATATTCCCTAACAAAATCAGAGGACAAGCAATGGCATTTGCAGTTGCTGCTCAATGGCTATCAAACTTCTTTATTTCATCAACCTATCCTGCAATGATAGACTTTAGTGGACCGCTAACTTATGGATTTTATGGTTTGATGTGTGTTATTTCCGCAATTTTTGTATGGAAGATGGTCCCAGAAACAAAAGGAAAGACGCTTGAACAATTAGAAAATACTTGGTTATAA > 1145 Tmz1t_0646 PFAM:_major_facilitator_superfamily_MFS_1;_General_substrate_transporter;_KEGG:_mno:Mnod_3237_major_facilitator_superfamily_MFS_1 major_facilitator_superfamily_MFS_1 ACK53418.1 11 MARKRRSTIIWVIALAFVGLVFDGYDLVVYGAVLPGFMGPDSAKWIGDHALTPKDAGMLGSYAMIGMMLGALVAGTLGDLIGRRKVMIGAIAWFSIGMAVSAMTETLAAFGVWRFITGLGVGALAGTTGAMAAEFAPPGKKNLATAFTYAGIPLGSLLSALLAIFLLPIIGWRGMFLIGALPLVTLLPLAIWKLPESVAWLASRGRLDEARKVSERTGVPIPEAEIKPQQSAAANASDARAGWAGLFTVYLVPAIVIGFVSAFCLLLVYSLNTWLPKIMLPIMGQNGSLALLLVLNAGAMVGTLYGSTLADKHSPQRIVALGFLVGALAMGAIGMIASTIDVPMVAKAGEIQQLADVSGIVVALLLLTIAITGLGTSGTQTLIYGLAANYYRTNVRGAGVAWTAAFGRIGGIFGPIFGAFLAVTFAGELHSIFYVLGGISLVGLALTLIIPKSKAAAVAQAVAPTTAAAAAVPAGKSRLYGTIMAVVDHTGNRLTRERVSEFVSLTGSKVHLVYLAPEHVLSAEVDQTDKAIDPAHVANLQEYVNEVNAQGVPAEGQILTSTLFGRGRAVVDLAEQLRCDLIILNTEEGGQRAKAELAQEVAGQNPKMAVLIARSTQ beta_subgroup Thauera_sp._MZ1T Thauera_sp._MZ1T CP001281 732881..734734 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Sims,D.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N._and_Sayler,G.S. NA 0:1854 On_May_14,_2009_this_sequence_version_replaced_gi:217505792.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4024116Source_DNA_and_bacteria_available_from_Gary_S._Sayler(Sayler@utk.edu)Contacts:_Gary_S._Sayler_(Sayler@utk.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Thauera_aromatica_3CB2GOLD_Stamp_ID_::_Gi03593Greengenes_ID_::_23705Isolation_Site_::_Marine_sediment,_Arthur_Kill,_NJIsolation_Country_::_USALatitude_::_40.55515Longitude_::_-74.215865Temperature_Range_::_MesophileBiotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Host,_Marine##Metadata-END## NA 21-NOV-2011 Thauera_sp._MZ1T,_complete_genome. NA beta-2_subgroup /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Thauera_sp_C4ZN06_THASP.gb Thauera_Macy_et_al._1993_emend._Song_et_al._1998 237624339 Unpublished NA CP001281 NA NA Rhodocyclales purple_photosynthetic_bacteria_and_relatives NA 1854 NA genomic_DNA NA MZ1T NA Thauera_sp._MZ1T NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 85643 Bacteria,_Proteobacteria,_Betaproteobacteria,_Rhodocyclales,_Rhodocyclaceae,_Thauera Complete_sequence_of_chromosome_of_Thauera_sp._MZ1T NA CP001281.2 ATGGCGCGCAAGCGGCGCAGCACCATCATCTGGGTGATCGCCCTGGCCTTCGTCGGCCTGGTCTTCGATGGCTACGACCTCGTCGTCTATGGCGCAGTCCTGCCCGGCTTCATGGGGCCGGACTCCGCCAAGTGGATCGGCGACCACGCACTCACGCCGAAAGACGCCGGCATGCTCGGCTCGTACGCGATGATCGGCATGATGCTCGGCGCCCTCGTCGCCGGCACCCTGGGCGATCTGATCGGCCGCCGCAAGGTCATGATCGGCGCCATCGCCTGGTTCTCGATCGGCATGGCGGTGTCGGCGATGACCGAGACGCTCGCCGCCTTCGGCGTCTGGCGCTTCATCACCGGCCTGGGCGTGGGCGCGCTGGCGGGCACCACGGGCGCGATGGCGGCCGAGTTCGCCCCGCCGGGGAAGAAGAACCTCGCCACCGCCTTCACCTATGCCGGCATCCCGCTGGGTTCGCTGCTGTCTGCGCTGCTGGCGATCTTCCTGCTGCCGATCATCGGCTGGCGCGGCATGTTCCTGATCGGCGCGCTGCCCCTGGTCACCCTGCTGCCGCTGGCGATCTGGAAGCTTCCCGAGTCGGTGGCCTGGCTGGCCTCGCGCGGCCGCCTGGACGAGGCCCGCAAGGTCTCCGAGCGCACCGGCGTGCCCATCCCCGAGGCGGAGATCAAGCCGCAGCAGAGCGCGGCCGCCAATGCCTCGGACGCGCGTGCGGGCTGGGCGGGTCTGTTCACCGTCTATCTCGTCCCGGCCATCGTCATCGGCTTCGTCTCGGCGTTCTGCCTGCTGCTGGTCTATTCGCTGAACACCTGGCTGCCGAAGATCATGCTGCCGATCATGGGCCAGAACGGATCGCTCGCATTGCTGCTGGTCCTCAACGCCGGCGCCATGGTCGGTACCCTGTACGGCTCCACCCTGGCCGACAAGCACAGCCCGCAGCGCATCGTGGCGCTGGGCTTCCTGGTCGGCGCGCTCGCCATGGGCGCCATCGGCATGATCGCCTCCACGATCGACGTCCCGATGGTCGCCAAAGCAGGCGAGATCCAGCAACTCGCCGACGTCAGCGGCATCGTCGTGGCCCTGCTGCTGCTTACGATCGCGATCACCGGCCTGGGGACCTCGGGGACGCAGACGCTGATCTACGGTCTGGCCGCCAACTACTACCGCACCAACGTCCGTGGCGCCGGTGTCGCCTGGACGGCGGCCTTCGGTCGTATCGGCGGCATCTTCGGGCCGATCTTCGGCGCCTTCCTGGCGGTCACGTTCGCCGGCGAGCTGCACAGCATCTTCTACGTGCTCGGCGGCATCAGCCTCGTCGGCCTGGCCCTCACCCTGATCATTCCGAAGAGCAAGGCGGCGGCGGTTGCACAGGCGGTGGCGCCGACCACGGCGGCTGCGGCGGCCGTGCCCGCCGGCAAGTCCCGTCTCTACGGCACCATCATGGCCGTGGTCGATCACACCGGAAACAGGCTGACGCGCGAGCGTGTCTCCGAGTTCGTCTCCCTGACGGGCTCGAAGGTGCACCTGGTGTATCTCGCGCCGGAGCACGTCCTGTCCGCCGAGGTCGATCAGACCGACAAGGCCATCGACCCGGCGCACGTGGCGAACCTGCAGGAGTATGTGAACGAGGTGAACGCGCAGGGTGTCCCGGCGGAGGGCCAGATCCTGACCTCCACGCTGTTCGGTCGCGGCAGGGCGGTGGTCGACCTGGCCGAGCAGCTGCGCTGCGACCTGATCATCCTCAACACCGAGGAGGGCGGCCAGCGTGCCAAGGCCGAGCTCGCGCAGGAGGTGGCCGGACAGAACCCGAAGATGGCGGTGCTGATCGCGCGCTCGACGCAGTAA > 1146 Tint_1384 PFAM:_General_substrate_transporter;_KEGG:_pag:PLES_12311_putative_major_facilitator_superfamily_(MFS)_transporter general_substrate_transporter YP_003643101.1 11 MTAASIAPVNKTSHIAIASFIGTAIEFYDFYVYAIAAALVIGPVFFPSASPTAQTLNAFATFGIAFLARPVGSFLFGHFGDRFGRKSTLVATLLTMGVCTTLIGLLPGYDHIGELAPWLLVTLRIGQGLGLGGEWGGAALLATENAPKHRRGLFGMFPQLGPSIGFLVANGLFLLLGLLLSHEQFMAWGWRIPFLVSAVLVFIGLYARLKLTETPLFQAVAKQPRRVPLTELLSGHLKPLILGSLSIVVCYALFYISAVFVLSYGIGTLHLPKPTLQAWLMLAIVCMAVATVLSAWASDALGRRAVLVASAGAAVLWGFALAPLLGSATTTGVGIFLCGALFLMGMTYAPLGAMLPEIFPTTVRYTGSGAAYNLGGILGASLAPYVAQVLVAHGGLSWVGGYISVAAVISLLAVLGLGETRHRDLGQTESVSIS beta_subgroup Thiomonas_intermedia_K12 Thiomonas_intermedia_K12 NC_014153 1487569..1488873 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Davenport,K.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Ovchinnikova,G.,_Kerfeld,C.A.,_Cannon,G.C.,_Heinhorst,S._and_Woyke,T. NA 0:1305 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002021.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4083905Source_DNA_and_organism_available_from_Sabine_Heinhorst(sabine.heinhorst@usm.edu)Contacts:_Sabine_Heinhorst_(sabine.heinhorst@usm.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Thiomonas_intermedia_K12GOLD_Stamp_ID_::_Gi02106Greengenes_ID_::_104125Funding_Program_::_DOE-CSP_2008Isolation_Site_::_sewage_pipe_in_Hamburg_GermanyIsolation_Country_::_GermanyLatitude_::_53.553407Longitude_::_9.992196Oxygen_Requirement_::_AerobeCell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_NonsporulatingTemperature_Range_::_MesophileGram_Staining_::_gram-Biotic_Relationship_::_Free_livingDiseases_::_NonePhenotypes_::_AcidophileEnergy_Source_::_Mixotroph##Metadata-END##COMPLETENESS:_full_length. NA 19-JAN-2012 Thiomonas_intermedia_K12_chromosome,_complete_genome. NA NA /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Thiomonas_intermedia_D5X0X5_THIK1.gb Thiomonas_Moreira_and_Amils_1997_emend._Kelly_et_al._2007 296134504 Unpublished NA NC_014153 NA NA Burkholderiales purple_photosynthetic_bacteria_and_relatives NA 1305 NA genomic_DNA NA K12 NA Thiomonas_intermedia_(London_1963)_Moreira_and_Amils_1997 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 75379 Bacteria,_Proteobacteria,_Betaproteobacteria,_Burkholderiales,_Thiomonas Complete_sequence_of_Thiomonas_intermedia_K12 NA NC_014153.1 TCAGGAAATGGAAACAGACTCGGTTTGACCGAGATCGCGGTGCCGGGTTTCACCCAGCCCCAGCACGGCGAGCAGGCTGATGACAGCCGCCACGGAAATGTAGCCGCCTACCCAGCTCAGCCCACCGTGCGCCACCAACACCTGAGCGACATAGGGGGCAAGCGAAGCCCCCAGAATGCCACCGAGGTTGTAGGCCGCGCCCGAGCCGGTGTAGCGCACCGTGGTGGGAAAAATCTCGGGCAGCATCGCGCCCAGCGGCGCATAGGTCATGCCCATGAGAAAGAGGGCGCCGCACAGAAATATTCCTACGCCCGTGGTAGTGGCTGAGCCCAGCAGCGGCGCGAGGGCGAAGCCCCAGAGCACCGCGGCCCCGGCCGACGCGACCAAGACGGCGCGTCGCCCCAGGGCGTCGCTGGCCCAGGCCGAGAGCACGGTGGCCACGGCCATGCAGACGATGGCCAGCATCAGCCAGGCCTGCAGCGTCGGCTTGGGCAGATGCAAGGTGCCGATGCCATAGCTCAGCACGAACACCGCGCTGATATAGAACAAGGCGTAGCAGACCACGATAGACAACGAGCCGAGTATCAGCGGCTTGAGGTGGCCGCTGAGCAGTTCGGTCAGCGGAACGCGTCGGGGTTGCTTGGCGACTGCCTGGAACAAGGGGGTTTCAGTGAGTTTGAGTCGCGCATACAGGCCGATGAACACCAGCACGGCGCTAACCAGAAAGGGAATGCGCCAGCCCCAGGCCATGAACTGTTCGTGGCTGAGCAGCAGTCCCAGCAGCAGAAACAGACCGTTGGCCACGAGAAAGCCGATGGAGGGCCCAAGCTGGGGAAACATGCCGAACAGACCGCGGCGGTGCTTGGGCGCGTTTTCGGTGGCGAGCAGCGCCGCGCCGCCCCATTCGCCGCCGAGCCCCAGCCCCTGGCCGATACGCAGGGTGACCAGCAACCACGGAGCCAGCTCGCCGATGTGGTCATAACCGGGCAGCAGGCCGATGAGCGTGGTGCACACTCCCATGGTGAGCAGCGTGGCGACCAAGGTGGACTTGCGGCCGAATCGATCGCCGAAATGTCCGAACAAAAAGGAGCCGACCGGCCGCGCCAGAAACGCGATGCCGAAAGTGGCAAAGGCGTTGAGCGTCTGCGCCGTGGGCGAGGCGCTGGGAAAGAATACCGGCCCGATGACCAGCGCCGCGGCAATGGCGTAAACGTAGAAGTCGTAGAACTCGATGGCCGTGCCGATGAAGCTGGCGATGGCGATATGCGATGTCTTGTTAACCGGGGCGATGGACGCGGCTGTCAT > 1147 Thit_1322 PFAM:_major_facilitator_superfamily_MFS_1;_KEGG:_tpd:Teth39_1328_major_facilitator_transporter major_facilitator_superfamily_protein YP_003477146.1 11 MLNIIILGLTSLLTDISTEMVYPLIPLFLTSQLGASPTIVGIIEGFAESLASILKVFSGYISDKVGKRKPLAIAGYSFSTIGKMFLYFATSWGWVFLGRTSDRFGKGIRTAPRDALIAEAVDKENIGRAYGLHRALDTLGATIGIALAYYFLTFYRGDYKAVFMYSLIPAFLGVFVLFFAKESKVTNQLSKKLSFSWRSLDRRLQMFLIVILIFALGNSSNQFLLLRAKNVGFSESDVILLYLVYNIVYMIFSYPMGRLSDKIGRKKLLIIGYFLYGIVYLGFAVFGFKSAMWILFSVYGLYIALTEGVEKALVAEISPSHLKATVIGLHATFTGIGLLPASFIAGILWDTLGVTAPFYFGGIMGVLAAIGLMIVL Clostridia_Rainey_2010 Thermoanaerobacter_italicus_Ab9 Thermoanaerobacter_italicus_Ab9 NC_013921 1344021..1345151 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Chertkov,O.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Hemme,C.L._and_Woyke,T. NA 0:1131 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001936.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4085036Source_DNA_and_organism_available_from_Christopher_L._Hemme(hemmecl@ou.edu)Contacts:_Christopher_L._Hemme_(hemmecl@ou.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Thermoanaerobacter_italicus_Ab9,_DSM_9252Culture_Collection_ID_::_DSM_9252GOLD_Stamp_ID_::_Gi02024Greengenes_ID_::_38062Isolation_Site_::_Mud,_thermal_spa;_Italy,_Abano_TermeIsolation_Country_::_ItalyLatitude_::_45.360542Longitude_::_11.789381Oxygen_Requirement_::_Anaerobecell_Shape_::_Rod-shapedMotility_::_Motilesporulation_::_SporulatingTemperature_Range_::_ThermophileTemperature_Optimum_::_70CGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Fresh_water,_Mud##Metadata-END##COMPLETENESS:_full_length. NA 13-OCT-2011 Thermoanaerobacter_italicus_Ab9_chromosome,_complete_genome. NA Thermoanaerobacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Thermoanaerobacter_italicus_D3T2Y2_THEIA.gb Thermobacteroides_Ben-Bassat_and_Zeikus_1983_emend._Ollivier_et_al._1985 289577265 Unpublished NA NC_013921 NA NA cluster_V low_GC_Gram+ NA 1131 NA genomic_DNA NA Ab9 NA Thermoanaerobacter_italicus_Kozianowski_et_al._1998 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 580331 Bacteria,_Firmicutes,_Clostridia,_Thermoanaerobacterales,_Thermoanaerobacteraceae,_Thermoanaerobacter Complete_sequence_of_Thermoanaerobacter_italicus_Ab9 NA NC_013921.1 TCATAAAACGATCATAAGGCCAATAGCAGCCAAAACTCCCATAATTCCGCCAAAATAAAAAGGTGCAGTTACTCCCAATGTATCCCAAAGTATTCCCGCTATAAAAGACGCCGGTAAAAGTCCAATACCTGTAAAAGTAGCATGAAGCCCTATGACTGTAGCTTTTAAATGGGATGGAGAAATTTCCGCAACTAAAGCTTTTTCAACCCCTTCAGTCAAGGCTATGTACAAGCCGTAAACAGAAAATAATATCCACATAGCACTTTTAAAGCCAAAAACAGCAAATCCCAAATACACTATTCCGTAAAGGAAATAACCGATAATGAGAAGTTTCTTTCTCCCTATTTTATCAGACAACCTTCCCATAGGATACGAAAAAATCATATAAACTATGTTGTACACCAAATACAAAAGTATAACATCTGACTCGCTAAATCCCACATTTTTCGCCCTTAAAAGCAAAAACTGATTAGAAGAATTACCTAAGGCAAAAATTAAAATAACTATTAAAAACATTTGAAGGCGTCTATCAAGACTTCTCCAAGAAAATGAAAGCTTTTTTGAAAGTTGATTTGTTACTTTGCTTTCCTTAGCAAAAAACAGCACAAAAACTCCTAAAAAAGCTGGTATCAGAGAATACATAAAAACCGCTTTATAATCTCCTCTATAAAAAGTCAAAAAATAATACGCCAAAGCAATTCCAATCGTCGCACCTAAAGTATCCAATGCTCTATGAAGTCCATATGCTCTTCCAATGTTTTCTTTATCTACAGCTTCAGCAATCAAAGCATCTCTTGGGGCTGTCCGTATTCCTTTTCCAAATCTGTCACTGGTTCTACCTAAAAACACCCATCCCCACGAAGTAGCAAAATACAAAAACATTTTTCCTATAGTAGAAAAAGAATATCCAGCTATAGCTAAAGGCTTTCTTTTACCTACTTTATCAGATATGTATCCTGAAAAAACCTTAAGTATACTAGCTAAACTTTCTGCAAACCCTTCAATGATACCTACTATTGTAGGGCTTGCCCCAAGTTGAGAAGTGAGAAAAAGTGGAATCAGAGGATATACCATTTCAGTAGATATATCTGTAAGAAGACTTGTCAACCCTAAAATAATTATATTTAACAA > 1148 Teth39_1328 PFAM:_major_facilitator_superfamily_MFS_1 major_facilitator_transporter YP_001665318.1 11 MLNVIILGLTSLLTDISTEMVYPLIPLFLTSQLGASPAIVGIIEGFAESLASILKVFSGYISDKVGKRKPLAIAGYSFSTIGKMFLYFATSWGWVFLGRTSDRFGKGIRTAPRDALIAEAVDKDKIGRAYGLHRALDTLGATIGIALAYYFLTSYKGNYKAVFMYSLIPAFLGVFVLFFAKESKVTNQLSKKLSFSWRSLDRRLQMFLIVILIFALGNSSNQFLLLRAKNVGFSDSDVILLYLVYNIVYMIFSYPMGRLSDKIGRKKLLIIGYFLYGIVYLGFAVFGFKSAMWILFSVYGLYIALTEGVEKALVAEISPPHLKGTVIGLHATFTGIGLLPASFIAGILWDTLGVTAPFYFGGIMGVLAAIGLMIVL Clostridia_Rainey_2010 Thermoanaerobacter_pseudethanolicus_ATCC_33223 Thermoanaerobacter_pseudethanolicus_ATCC_33223 NC_010321 1361748..1362878 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Pitluck,S.,_Bruce,D.,_Goodwin,L.,_Saunders,E.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Lykidis,A.,_Hemme,C.,_Fields,M.W.,_He,Z.,_Zhou,J._and_Richardson,P. NA 0:1131 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000924.URL_--_http://www.jgi.doe.govJGI_Project_ID:_3635487Source_DNA_and_bacteria_available_from_Jizhong_Zhou_(jzhou@ou.edu)Contacts:_Jizhong_Zhou_(jzhou@ou.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?page).COMPLETENESS:_full_length. NA 24-JAN-2012 Thermoanaerobacter_pseudethanolicus_ATCC_33223_chromosome,_complete_genome. NA Thermoanaerobacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Thermoanaerobacter_pseudethanolicus_B0KA19_THEP3.gb Thermobacteroides_Ben-Bassat_and_Zeikus_1983_emend._Ollivier_et_al._1985 167036431 Unpublished NA NC_010321 NA NA cluster_V low_GC_Gram+ NA 1131 NA genomic_DNA NA ATCC_33223;_39E NA Thermoanaerobacter_pseudethanolicus_Onyenwoke_et_al._2007 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 340099 Bacteria,_Firmicutes,_Clostridia,_Thermoanaerobacterales,_Thermoanaerobacteraceae,_Thermoanaerobacter Complete_sequence_of_Thermoanaerobacter_psuedethanolicus_39E NA NC_010321.1 TCATAAAACGATCATAAGGCCAATAGCAGCCAAAACTCCCATAATTCCGCCAAAATAAAAAGGTGCAGTTACTCCCAATGTATCCCAAAGTATTCCCGCTATAAAAGAAGCCGGTAAAAGGCCAATGCCTGTAAAAGTAGCATGAAGCCCTATAACTGTACCTTTTAAATGAGGTGGAGAAATCTCCGCAACTAAAGCTTTTTCAACACCCTCAGTCAAAGCGATGTACAAACCATAAACAGAAAATAATATCCACATAGCACTTTTAAAGCCAAAAACAGCAAATCCCAAATACACTATTCCGTAAAGGAAATAGCCGATGATGAGAAGTTTCTTTCTTCCTATTTTATCCGACAATCTTCCCATAGGATACGAAAAAATCATATAAACTATGTTGTACACCAAATACAAAAGTATAACATCCGAATCGCTAAATCCCACATTTTTCGCCCTTAAAAGCAAAAATTGATTAGAGGAATTACCCAAGGCAAAAATTAAAATAACTATTAAAAACATTTGAAGGCGTCTATCAAGACTTCTCCAAGAAAATGAAAGCTTTTTTGAAAGTTGATTTGTTACTTTGCTTTCCTTAGCAAAAAACAGCACAAAAACTCCTAAAAAAGCTGGTATTAAAGAATACATAAAAACCGCCTTATAATTCCCTTTGTAAGAAGTCAAAAAATAATAGGCTAAAGCAATTCCAATCGTTGCCCCTAAGGTATCCAATGCTCTATGAAGTCCATATGCTCTTCCGATCTTATCTTTATCTACAGCTTCAGCAATTAAAGCATCTCTCGGGGCTGTTCGTATTCCTTTTCCAAATCTGTCACTAGTTCTACCTAAAAACACCCATCCCCATGAAGTAGCAAAATACAAAAACATTTTTCCTATAGTGGAAAAAGAATATCCAGCTATAGCTAAAGGTTTTCTTTTACCTACTTTATCAGATATGTACCCTGAAAAAACTTTAAGTATGCTAGCTAAACTTTCTGCAAAACCTTCAATGATACCCACTATTGCCGGGCTTGCCCCCAGTTGAGAGGTGAGAAAAAGTGGAATCAAAGGATATACCATTTCAGTAGATATATCTGTAAGAAGACTTGTCAACCCCAAAATAATTACATTTAACAA > 1149 Thet_1135 PFAM:_major_facilitator_superfamily_MFS_1;_KEGG:_tpd:Teth39_1328_major_facilitator_transporter major_facilitator_superfamily_protein YP_003904029.1 11 MLNVIILGLTSLLTDISTEMVYPLIPLFLTSQLGASPAIVGIIEGFAESLASILKVFSGYISDKVGKRKPLAIAGYSFSTIGKMFLYFATSWGWVFLGRTSDRFGKGIRTAPRDALIAEAVDKDKIGRAYGLHRALDTLGATIGIALAYYFLTSYKGNYKAVFMYSLIPAFLGVFVLFFAKESKVTNQLSKKLSFSWRSLDRRLQMFLIVILIFALGNSSNQFLLLRAKNVGFSDSDVILLYLVYNIVYMIFSYPMGRLSDKIGRKKLLIIGYFLYGIVYLGFAVFGFKSAMWILFSVYGLYIALTEGVEKALVAEISPPHLKGTVIGLHATFTGIGLLPASFIAGILWDTLGVTAPFYFGGIMGVLAAIGLMIVL Clostridia_Rainey_2010 Thermoanaerobacter_sp._X513 Thermoanaerobacter_sp._X513 NC_014538 1144912..1146042 Lucas,S.,_Copeland,A.,_Lapidus,A.,_Cheng,J.-F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Daligault,H.,_Davenport,K.,_Detter,J.C.,_Han,C.,_Tapia,R.,_Land,M.,_Hauser,L.,_Jeffries,C.,_Kyrpides,N.,_Ivanova,N.,_Mikhailova,N.,_Hemme,C.L._and_Woyke,T. NA 0:1131 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002210.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4085026Source_DNA_and_organism_available_from_Christopher_L._Hemme(hemmecl@ou.edu)Contacts:_Christopher_L._Hemme_(hemmecl@ou.edu)_Tanja_Woyke_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Thermoanaerobacter_sp._X513collection_date_::_Missinglat_lon_::_Missingdepth_::_2000_malt_elev_::_Missingcountry_::_USAenvironment_::_Fresh_waternum_replicons_::_Missingref_biomaterial_::_Missingbiotic_relationship_::_Free_livingtrophic_level_::_Missingrel_to_oxygen_::_Anaerobeisol_growth_condt_::_Missingsequencing_meth_::_WGSassembly_::_Newbler_v._2.3_(pre-release)finishing_strategy_::_FinishedSequencing_Depth_::_30xGOLD_Stamp_ID_::_Gi01523Greengenes_ID_::_169356Funding_Program_::_DOEM_2007Gene_Calling_Method_::_ProdigalIsolation_Site_::_Deep_subsurface_location_at_the_Piceance_Basin,_Colorado,_USASource_of_Isolate_::_isolated_by_anaerobic_enrichment_cultureCell_Shape_::_Rod-shapedMotility_::_MotileSporulation_::_SporulatingTemperature_Range_::_ThermophileTemperature_Optimum_::_60CGram_Staining_::_Gram+Diseases_::_None##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_FinishedAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_30xSequencing_Technology_::_454/Illumina##Genome-Assembly-Data-END##COMPLETENESS:_full_length. NA 03-MAY-2011 Thermoanaerobacter_sp._X513_chromosome,_complete_genome. NA Thermoanaerobacteriaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Thermoanaerobacter_sp_E1T110_THESX.gb Thermobacteroides_Ben-Bassat_and_Zeikus_1983_emend._Ollivier_et_al._1985 307723218 Unpublished NA NC_014538 NA NA cluster_V low_GC_Gram+ NA 1131 NA genomic_DNA NA X513 NA Thermoanaerobacter_sp._X513 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 573062 Bacteria,_Firmicutes,_Clostridia,_Thermoanaerobacterales,_Thermoanaerobacteraceae,_Thermoanaerobacter Complete_sequence_of_Thermoanaerobacter_sp._X513 NA NC_014538.1 TTGTTAAATGTAATTATTTTGGGGTTGACAAGTCTTCTTACAGATATATCTACTGAAATGGTATATCCTTTGATTCCACTTTTTCTCACCTCTCAACTGGGGGCAAGCCCGGCAATAGTGGGTATCATTGAAGGTTTTGCAGAAAGTTTAGCTAGCATACTTAAAGTTTTTTCAGGGTACATATCTGATAAAGTAGGTAAAAGAAAACCTTTAGCTATAGCTGGATATTCTTTTTCCACTATAGGAAAAATGTTTTTGTATTTTGCTACTTCATGGGGATGGGTGTTTTTAGGTAGAACTAGTGACAGATTTGGAAAAGGAATACGAACAGCCCCGAGAGATGCTTTAATTGCTGAAGCTGTAGATAAAGATAAGATCGGAAGAGCATATGGACTTCATAGAGCATTGGATACCTTAGGGGCAACGATTGGAATTGCTTTAGCCTATTATTTTTTGACTTCTTACAAAGGGAATTATAAGGCGGTTTTTATGTATTCTTTAATACCAGCTTTTTTAGGAGTTTTTGTGCTGTTTTTTGCTAAGGAAAGCAAAGTAACAAATCAACTTTCAAAAAAGCTTTCATTTTCTTGGAGAAGTCTTGATAGACGCCTTCAAATGTTTTTAATAGTTATTTTAATTTTTGCCTTGGGTAATTCCTCTAATCAATTTTTGCTTTTAAGGGCGAAAAATGTGGGATTTAGCGATTCGGATGTTATACTTTTGTATTTGGTGTACAACATAGTTTATATGATTTTTTCGTATCCTATGGGAAGATTGTCGGATAAAATAGGAAGAAAGAAACTTCTCATCATCGGCTATTTCCTTTACGGAATAGTGTATTTGGGATTTGCTGTTTTTGGCTTTAAAAGTGCTATGTGGATATTATTTTCTGTTTATGGTTTGTACATCGCTTTGACTGAGGGTGTTGAAAAAGCTTTAGTTGCGGAGATTTCTCCACCTCATTTAAAAGGTACAGTTATAGGGCTTCATGCTACTTTTACAGGCATTGGCCTTTTACCGGCTTCTTTTATAGCGGGAATACTTTGGGATACATTGGGAGTAACTGCACCTTTTTATTTTGGCGGAATTATGGGAGTTTTGGCTGCTATTGGCCTTATGATCGTTTTATGA > 1150 trd_A0621 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 major_facilitator_superfamily_protein YP_002523903.1 11 MLSLSQRLDELPLTREHWRIVLLAGIGWMFDAMDVGLVAFVLVSLGRDWNLSRPELGLVASAGFLGMFLGALLAGRLADRYGRRTMFLANLLLYSLGTALCALAWNFPSLILFRFLTGIGLGGELPVAAALVSEFAPARHRGRMLVILESFWAYGWILAAVIGLLVVPQLPSWGWRVAFLIGALPALTAAYLRRQLPESPRYLDIAGRHTEAVAVLRRFEQAASMPPAEVTTTPAPPHPSFAQQFRALWSRQLLRRTVMLWLLWFGIVFAYYGVFTWLPSLLVERGLTVARSFTYVFITTLAQIPGYFSAAYLVDRWGRKPTLVTYLLGSALSAWLLGNAGTAPILVLWGCALSFFNLGAWGVVYTYTPELYPTTLRGFGSGAAASFGRIAGIIAPYLTPWLLTSGGFSQPAVFALFMAVFAVIAADVLLLGEETRGRPLEHVSPTPAQLAR Thermomicrobia_Garrity_and_Holt_2002_emend._Hugenholtz_and_Stackebrandt_2004 Thermomicrobium_roseum_DSM_5159 Thermomicrobium_roseum_DSM_5159 NC_011961 610453..611811 Wu,D.,_Raymond,J.,_Wu,M.,_Chatterji,S.,_Ren,Q.,_Graham,J.E.,_Bryant,D.A.,_Robb,F.,_Colman,A.,_Tallon,L.J.,_Badger,J.H.,_Madupu,R.,_Ward,N.L._and_Eisen,J.A. NA 0:1359 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001276.COMPLETENESS:_full_length. NA 23-JAN-2012 Thermomicrobium_roseum_DSM_5159_plasmid_unnamed,_complete_sequence. NA Thermomicrobiaceae_Garrity_and_Holt_2002 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Thermomicrobium_roseum_B9L4A7_THERP.gb Thermomicrobium_Jackson_et_al._1973 221635406 PLoS_ONE_4_(1),_E4207_(2009) NA NC_011961 NA NA Thermomicrobiales_Garrity_and_Holt_2002 green_nonsulfur_bacteria 19148287 1359 NA genomic_DNA NA DSM_5159 NA Thermomicrobium_roseum_Jackson_et_al._1973 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 309801 Bacteria,_Chloroflexi,_Thermomicrobiales,_Thermomicrobiaceae,_Thermomicrobium Complete_genome_sequence_of_the_aerobic_CO-oxidizing_thermophile_Thermomicrobium_roseum NA NC_011961.1 ATGCTCTCGCTCAGCCAACGCCTGGACGAACTCCCACTCACGCGCGAGCACTGGCGCATCGTCCTGCTCGCTGGGATCGGCTGGATGTTCGACGCCATGGATGTCGGCCTCGTCGCGTTCGTCCTGGTCAGTCTCGGACGCGACTGGAATCTGAGCCGTCCCGAGCTCGGACTCGTCGCCAGTGCCGGATTTCTCGGCATGTTCCTCGGGGCACTCCTGGCCGGCCGACTCGCCGACCGCTATGGCCGCCGAACCATGTTTCTCGCCAATTTGCTCCTCTACAGCCTCGGTACCGCTCTCTGCGCGCTCGCCTGGAATTTCCCGTCCCTTATCCTCTTCCGTTTCCTCACCGGTATCGGGCTCGGCGGTGAACTACCGGTCGCCGCAGCGCTCGTCAGCGAGTTCGCTCCGGCTCGCCATCGTGGTCGCATGCTCGTCATTTTGGAAAGTTTCTGGGCGTATGGATGGATCCTGGCTGCTGTCATCGGCCTGCTCGTCGTTCCCCAGCTGCCGAGCTGGGGTTGGCGCGTTGCCTTTCTCATCGGCGCGCTGCCTGCGCTGACCGCTGCGTATCTGCGCCGCCAGCTCCCCGAGTCTCCCCGCTATCTCGATATCGCTGGTCGGCACACCGAGGCGGTCGCTGTTTTGCGTCGCTTCGAGCAAGCCGCGAGTATGCCGCCTGCTGAAGTGACCACGACACCTGCTCCCCCGCACCCGTCTTTTGCCCAGCAGTTTCGCGCCCTCTGGAGTCGGCAGCTCCTCCGGCGTACGGTGATGCTCTGGCTCCTGTGGTTCGGCATCGTCTTCGCCTACTACGGCGTCTTCACGTGGCTTCCCTCGTTGCTGGTCGAACGCGGGCTCACGGTGGCCCGCAGCTTCACCTATGTCTTCATCACGACACTCGCGCAGATCCCTGGCTACTTCTCGGCCGCCTACCTTGTCGATCGGTGGGGCCGCAAGCCGACGCTGGTGACCTACCTGCTCGGCTCGGCGCTTTCCGCCTGGCTACTCGGGAACGCCGGGACAGCGCCGATTCTCGTGCTTTGGGGTTGTGCGCTCTCCTTCTTCAATCTCGGCGCCTGGGGGGTCGTCTATACCTACACGCCGGAACTCTATCCCACGACGCTGCGGGGCTTCGGCTCGGGTGCTGCCGCGAGTTTCGGCCGTATCGCTGGCATCATCGCTCCCTACCTCACCCCTTGGCTGCTCACCAGCGGCGGTTTCTCTCAGCCGGCTGTCTTCGCGCTCTTCATGGCCGTCTTCGCCGTCATCGCGGCCGACGTGCTCCTGCTCGGCGAAGAGACGCGTGGTCGCCCACTCGAACACGTCAGCCCGACGCCAGCACAGCTCGCACGCTGA > 1151 Tneu_0265 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_pis:Pisl_1331_major_facilitator_superfamily_MFS_1 general_substrate_transporter YP_001793664.1 11 MIRLVTAASTVGSLIEWYEVFAYVSLSSYISKNFFPQQDPVAATILTWLVFATTFVVRPVGAVLFGHLGDRVGRKATFLATLLLMGVATFLIGLLPTYGQIGVAAPVLLTVLRILQGLSLGGELGGAVTYVLEHAPSRSRAFYVGFIAATPPLGLGLSSFTLVATAALMPPQAFQDYGWRVPFLVSIVLTVLGLVLRLKLAETPLFEKIRGEGAVSKMPVVEAVARYPGYILVGVAVAAGHAVLAYTSTGYIFPFLTQVVKLSPVEANLAVGLATVAQLPFYIINAWLADRVGRRVIYSAGVALALATYYPIFSWLVGVKDVGSVALGVFVLVLATAFTFSVLGTALAEMFPTRVRYTGMSLAINLGIGLFGGFTPSIVQAISLWLKNPLAGVLLYTYVVAGFALAVALLLMPETKDKPLD Thermoprotei_Reysenbach_2002 Thermoproteus_neutrophilus_V24Sta Thermoproteus_neutrophilus_V24Sta NC_010525 230761..232026 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Glavina_del_Rio,T.,_Dalin,E.,_Tice,H.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Sims,D.,_Brettin,T.,_Detter,J.C.,_Han,C.,_Kuske,C.R.,_Schmutz,J.,_Larimer,F.,_Land,M.,_Hauser,L.,_Kyrpides,N.,_Mikhailova,N.,_Biddle,J.F.,_Zhang,Z.,_Fitz-Gibbon,S.T.,_Lowe,T.M.,_Saltikov,C.,_House,C.H._and_Richardson,P. NA 0:1266 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001014.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4003084Source_DNA_and_archaea_available_from_Todd_Lowe_(lowe@soe.ucsc.edu)Contacts:_Todd_Lowe_(lowe@soe.ucsc.edu)_Paul_Richardson_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 26-JAN-2012 Thermoproteus_neutrophilus_V24Sta_chromosome,_complete_genome. NA Thermoproteaceae_Zillig_and_Stetter_1982_emend._Burggraf_et_al._1997 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Thermoproteus_neutrophilus_B1YB87_THENV.gb Thermoproteus_Zillig_and_Stetter_1982 171184485 Unpublished NA NC_010525 NA NA Thermoproteales_Zillig_and_Stetter_1982_emend._Burggraf_et_al._1997 not_Crenarchaeota_Cavalier-Smith_2002 NA 1266 NA genomic_DNA NA V24Sta NA Thermoproteus_neutrophilus_Zillig_1989 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 444157 Archaea,_Crenarchaeota,_Thermoprotei,_Thermoproteales,_Thermoproteaceae,_Thermoproteus Complete_sequence_of_Thermoproteus_neutrophilus_V24Sta NA NC_010525.1 ATGATCAGGTTGGTCACGGCGGCTTCCACGGTGGGGAGCTTGATCGAGTGGTACGAGGTTTTTGCCTACGTCTCCCTCTCCTCCTATATATCTAAGAACTTCTTCCCCCAGCAGGACCCCGTTGCGGCCACAATCCTCACATGGCTCGTGTTCGCCACGACCTTCGTGGTTAGGCCAGTTGGGGCGGTTCTCTTTGGGCACCTCGGCGATAGGGTTGGGAGAAAGGCGACGTTCCTCGCGACTCTACTCCTCATGGGTGTCGCGACCTTCCTCATAGGCCTCCTCCCCACCTACGGCCAGATCGGCGTTGCCGCGCCGGTGCTTTTGACGGTGCTGAGGATCCTCCAGGGCTTGTCTCTAGGCGGCGAGTTGGGAGGAGCAGTGACTTACGTCCTAGAACACGCGCCTAGCCGGAGCAGGGCGTTCTACGTGGGGTTCATCGCGGCGACGCCGCCGCTCGGCCTCGGCCTTTCTTCCTTCACCCTTGTCGCCACTGCCGCCTTGATGCCTCCCCAGGCGTTCCAAGACTACGGATGGCGCGTCCCCTTCCTGGTCTCCATAGTGCTGACGGTGCTGGGTCTAGTCCTCCGCTTGAAGCTCGCGGAGACCCCCCTCTTCGAGAAGATCAGAGGCGAGGGGGCCGTGTCCAAGATGCCGGTTGTCGAAGCCGTGGCCAGGTACCCCGGGTACATCCTCGTCGGCGTTGCGGTTGCCGCCGGGCACGCTGTTCTGGCCTACACGTCCACCGGCTACATATTTCCATTTCTGACGCAGGTCGTCAAGCTCAGCCCCGTCGAGGCCAACCTCGCGGTGGGCCTAGCCACGGTTGCCCAGCTACCCTTCTACATAATCAACGCTTGGCTCGCAGACAGAGTCGGTAGAAGGGTTATATATTCGGCGGGCGTGGCGCTGGCCCTCGCCACGTACTACCCCATCTTCAGCTGGCTTGTCGGGGTGAAAGACGTGGGCTCGGTGGCGCTGGGGGTTTTTGTGCTCGTGTTGGCCACGGCCTTCACCTTCAGCGTGTTGGGCACCGCCCTCGCCGAGATGTTCCCCACCCGGGTGAGGTATACCGGCATGTCGCTGGCCATAAACCTGGGCATCGGCCTATTCGGCGGCTTCACGCCGTCGATAGTGCAAGCCATATCCCTCTGGCTCAAAAACCCGCTGGCCGGCGTCCTGCTGTATACATACGTCGTCGCCGGCTTCGCCCTAGCCGTGGCCTTGTTGCTCATGCCGGAGACAAAGGACAAGCCTCTAGACTAG > 1152 TRV_00840 NA phosphate:H+_symporter XP_003025035.1 NA MTGTHDPLVDMRLHEKEAFDAFIRPDDSYTPEGVYWADLPLMKKIQFVTSVDMEESKKEAASFWEMFKNDPLSPVSFYFKNMVLPGAGLGLEGYVLFSIGNIKPLFQKAFPDCWKHEKTCDPTWLAAVEYLEICGIIVGQILVGILGDWIGRRWGLIQDAVIMLLGLIMLTAAWGVTQNGWVICYVWSLFFYGIGVGGEYPMTATSGMENAVGSGKISTKEDRLHRGRKVTSAFLMQGWGQFFNQALLILLLLIFHHGSGNPPYSTLSAQWTYRVSFAIPAVGTLWLVYYRYYKMRAASKQLAIAKAKSRVTGYDTDSLRLTFKHFGFRLLATAGTWFANDVFFYGNKLFQSEFISVISPHTTSVMPGWLYNLLNVGVSLCGYYLASFLIDNKLYGRKWMQIIGFLMDFVFFIIPAFHFEYYTTPEHIKEFQAMYFLSSFFNQFGPNSVTFLVAAEVFPTPIRATAHGFAAAIGKLGALTAAVMYNYISTTQKFHVVPWFGLAGVILTYLFLPDTTGLDLKEQERRWFYIRQGRESEYHGAAVHPKHLSVYERWTGVGKYYDPEADYKQKVAEMREEWAAAQARKADEKSGFGDDDHHDYEPVHHDVHKYFERTSPMILGREKNVPMSDQLPPAHDNSSDDVVEQHPHQD bitunicate_ascomycetes Trichophyton_verrucosum_HKI_0517 Trichophyton_verrucosum_HKI_0517 XM_003024989 NA Burmester,A.,_Shelest,E.,_Gloeckner,G.,_Heddergott,C.,_Schindler,S.,_Staib,P.,_Felder,M.,_Petzold,A.,_Szafranski,K.,_Monod,M.,_Winkler,R.,_Kniemeyer,O.,_Schroeckh,V.,_Hertweck,C.,_Platzer,M.,_Guthke,R.,_Heitman,J.,_Wostemeyer,J.,_Zipfel,P.F._and_Brakhage,A.A. NA 0:1953 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315587).COMPLETENESS:_incomplete_on_both_ends. NA 12-AUG-2010 Trichophyton_verrucosum_HKI_0517_phosphate:H+_symporter,_mRNA. NA dermatophytes /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Trichophyton_verrucosum_D4D192_TRIVH.gb Trichophyton 302666878 Unpublished fungi XM_003024989 NA NA Onygenales sac_fungi NA 1953 NA mRNA NA HKI_0517 NA Trichophyton_verrucosum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 663202 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Arthrodermataceae,_mitosporic_Arthrodermataceae,_Trichophyton Dermatophyte_fungi_deploy_unique_virulence_strategies_to_cause_cutaneous_infection NA XM_003024989.1 ATGACGGGCACCCACGACCCGCTGGTCGACATGCGGCTCCATGAGAAAGAGGCCTTTGATGCCTTTATCCGCCCGGACGACTCGTACACGCCAGAGGGCGTCTACTGGGCCGATCTGCCGCTCATGAAGAAGATCCAGTTCGTCACCTCGGTCGATATGGAGGAGTCCAAGAAGGAGGCTGCTTCGTTTTGGGAGATGTTCAAGAACGACCCCCTGTCTCCTGTTAGTTTCTACTTCAAGAACATGGTCTTGCCTGGTGCTGGTCTCGGTTTGGAAGGATATGTGCTCTTTTCAATTGGAAATATTAAACCTCTGTTCCAAAAAGCGTTCCCTGACTGCTGGAAACACGAAAAGACTTGTGATCCTACCTGGCTTGCTGCTGTTGAATACCTGGAAATCTGCGGTATCATCGTTGGTCAGATATTGGTTGGTATTCTCGGTGATTGGATTGGTCGTCGTTGGGGTCTGATTCAAGATGCAGTCATCATGTTGCTCGGTCTCATCATGCTTACTGCTGCCTGGGGTGTCACCCAGAACGGCTGGGTCATCTGCTACGTCTGGTCTCTCTTCTTCTACGGCATTGGTGTCGGCGGCGAATACCCCATGACAGCCACATCTGGAATGGAGAACGCAGTCGGATCAGGCAAAATCTCGACCAAGGAAGATCGTCTCCACCGTGGCCGCAAGGTTACGTCTGCCTTTTTGATGCAGGGATGGGGCCAGTTCTTCAACCAGGCCCTCCTCATTCTTCTGCTGCTCATCTTCCACCACGGCAGCGGAAACCCACCATACTCGACCCTCTCTGCCCAGTGGACCTACCGTGTCTCCTTTGCCATCCCTGCTGTTGGAACCCTCTGGCTCGTCTACTACAGATACTACAAGATGCGCGCGGCAAGCAAACAGCTGGCAATCGCAAAGGCCAAGTCCCGCGTCACCGGCTACGACACAGATTCCCTGCGCCTTACCTTCAAGCACTTCGGTTTCCGCCTACTTGCTACCGCAGGTACATGGTTCGCCAACGACGTCTTCTTCTACGGCAACAAGCTCTTCCAGTCCGAGTTCATCAGTGTCATTTCCCCACACACCACTTCCGTCATGCCCGGATGGCTGTATAACTTGCTTAACGTTGGAGTCTCCCTCTGCGGATACTATCTTGCTTCTTTCCTGATCGACAACAAGCTCTATGGCCGCAAGTGGATGCAGATCATTGGATTCCTGATGGATTTCGTCTTCTTCATCATCCCTGCCTTCCACTTCGAATACTATACCACCCCGGAGCACATCAAGGAGTTCCAGGCCATGTACTTCCTGTCATCCTTCTTCAACCAGTTCGGCCCCAACTCGGTCACCTTCCTTGTAGCCGCCGAGGTCTTCCCCACTCCTATCCGTGCCACCGCCCACGGTTTCGCAGCGGCTATTGGAAAGCTTGGCGCTCTTACCGCAGCCGTGATGTACAACTACATCAGCACAACGCAAAAATTCCACGTCGTCCCCTGGTTCGGTCTCGCCGGTGTCATCCTCACCTACCTCTTCCTCCCTGACACCACCGGTCTCGACCTCAAGGAGCAAGAACGACGATGGTTCTACATCCGCCAGGGTAGAGAATCTGAGTACCACGGTGCTGCTGTCCACCCTAAGCATCTCTCTGTCTACGAGCGATGGACGGGTGTAGGCAAATACTACGACCCCGAAGCCGACTATAAACAGAAAGTCGCTGAGATGCGAGAGGAGTGGGCTGCTGCTCAGGCACGCAAGGCCGATGAGAAGAGCGGCTTTGGTGATGACGACCACCACGACTACGAGCCAGTTCACCATGACGTACACAAGTACTTCGAGCGCACAAGTCCGATGATTTTGGGCCGGGAAAAGAACGTTCCGATGAGCGACCAGCTTCCTCCAGCTCACGACAACAGCAGTGACGACGTTGTTGAGCAACACCCTCATCAGGATTAA > 1153 TRV_06650 NA MFS_sugar_transporter,_putative XP_003019306.1 NA MGVGSRYFGLRGTKLNIAIGIIAGLDFLGVMGGLLTLHSFEKVFPEIATSNAAVAGLTRAEKNHRSTIQGISVASYNLGCFVGAIACIWVGDRLGRRKTIWLGSVIMVVGATLQASAFGLPHFIVGRLVTGVGNGLNTSTVPTWQSECSKSHRRGQLVMVEGALITGGICLSYWLDFGFSFLEPSSVSWRFPIAFQIVFALIIMFVVMGLPESPRWLVLKGQEDEAMNVLAALSDLDREDRFVHSEFSAIKDTVIEMQKGSFKDLFTMDKDRHLHRVILAYVNQMFQQISGINLITYYAATIYEGSIGLSPFLSRILAACNGTEYFIASWIAVFVVERIGRRMLMLFGAVGMSLSMAVLAIATSFKHQTDAGIVAAVFLFVFNTFFAIGWLANALATSGNWIFNFMVVMITPVSFSLIEYKTYIIFAAINAFIVPVVYFFYPETAYRSLEEMDSIFRKTKSIFTVVKVARETPRRYGKNGEVLINYDETDEHRTRAGVTQEETTASFPEKSNANPDHDAETGNSNSPSNQSTA bitunicate_ascomycetes Trichophyton_verrucosum_HKI_0517 Trichophyton_verrucosum_HKI_0517 XM_003019260 NA Burmester,A.,_Shelest,E.,_Gloeckner,G.,_Heddergott,C.,_Schindler,S.,_Staib,P.,_Felder,M.,_Petzold,A.,_Szafranski,K.,_Monod,M.,_Winkler,R.,_Kniemeyer,O.,_Schroeckh,V.,_Hertweck,C.,_Platzer,M.,_Guthke,R.,_Heitman,J.,_Wostemeyer,J.,_Zipfel,P.F._and_Brakhage,A.A. NA 0:1602 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315256).COMPLETENESS:_incomplete_on_both_ends. NA 12-AUG-2010 Trichophyton_verrucosum_HKI_0517_MFS_sugar_transporter,_putative,_mRNA. NA dermatophytes /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Trichophyton_verrucosum_D4DHJ4_TRIVH.gb Trichophyton 302655021 Unpublished fungi XM_003019260 NA NA Onygenales sac_fungi NA 1602 NA mRNA NA HKI_0517 NA Trichophyton_verrucosum NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 663202 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Arthrodermataceae,_mitosporic_Arthrodermataceae,_Trichophyton Dermatophyte_fungi_deploy_unique_virulence_strategies_to_cause_cutaneous_infection NA XM_003019260.1 ATGGGCGTGGGGAGTCGGTACTTCGGCCTTCGAGGCACGAAGCTCAACATTGCCATTGGCATCATTGCCGGCCTGGATTTCTTAGGCGTCATGGGCGGACTGTTGACGCTCCATTCTTTCGAAAAGGTCTTCCCTGAAATCGCTACCAGCAACGCAGCGGTTGCAGGCTTGACCCGGGCCGAAAAGAACCACCGATCTACCATTCAGGGTATCTCGGTCGCATCATATAACCTCGGATGTTTCGTTGGCGCAATTGCTTGTATCTGGGTCGGTGACAGACTCGGCCGTCGAAAGACTATCTGGCTGGGCTCTGTTATCATGGTCGTTGGTGCTACTCTGCAGGCCTCTGCCTTTGGTCTCCCACACTTCATCGTCGGTCGTCTTGTAACTGGTGTCGGCAACGGCCTGAACACCTCCACTGTACCAACATGGCAGTCCGAATGCTCCAAATCCCACAGACGAGGACAGCTCGTCATGGTCGAAGGTGCTCTGATCACCGGAGGTATCTGTCTCAGTTACTGGCTGGACTTTGGATTCTCCTTCCTCGAACCCAGCTCGGTCTCATGGCGGTTCCCGATTGCATTCCAGATCGTTTTTGCCCTCATCATCATGTTCGTGGTCATGGGTCTACCAGAGTCTCCTCGATGGCTCGTTCTCAAGGGCCAGGAGGACGAAGCTATGAACGTTCTGGCTGCACTTAGCGATTTGGACAGGGAGGACAGATTTGTCCACTCGGAGTTCTCTGCTATCAAGGATACGGTCATTGAGATGCAGAAGGGCAGCTTCAAGGACCTGTTCACCATGGACAAGGACCGCCACTTGCACCGTGTCATTCTCGCATACGTCAACCAGATGTTCCAGCAGATTTCCGGTATCAATCTCATCACATACTATGCTGCCACCATTTACGAAGGAAGCATCGGTCTCAGTCCATTCCTTTCGCGAATTCTGGCAGCTTGCAACGGTACCGAGTACTTTATTGCATCCTGGATTGCCGTTTTCGTCGTTGAAAGAATTGGCCGTCGTATGCTCATGTTGTTCGGTGCTGTGGGCATGTCCCTCTCAATGGCTGTCCTTGCCATTGCTACCAGCTTCAAGCATCAAACAGACGCCGGCATTGTCGCAGCCGTCTTCCTCTTCGTTTTCAACACCTTCTTCGCCATCGGCTGGCTCGCCAACGCCTTGGCCACTTCAGGAAACTGGATTTTCAACTTCATGGTCGTCATGATCACACCAGTTTCTTTCTCCTTGATCGAATACAAAACATACATCATATTTGCAGCTATTAACGCTTTCATTGTTCCAGTGGTCTACTTCTTCTACCCAGAGACGGCCTACCGCTCCCTCGAAGAAATGGACTCGATCTTCAGAAAGACCAAGTCTATCTTTACCGTGGTAAAGGTAGCTCGCGAAACTCCAAGACGATACGGCAAGAACGGTGAAGTTCTCATCAACTATGATGAGACAGACGAGCACCGGACTCGTGCCGGCGTCACCCAGGAGGAGACGACGGCATCATTCCCCGAGAAGAGCAATGCAAACCCAGACCATGATGCTGAAACTGGTAACTCGAATAGCCCGAGCAACCAGAGCACAGCATAG > 1154 Tpau_0038 PFAM:_flavoprotein;_KEGG:_fra:Francci3_1816_flavoprotein flavoprotein YP_003645031.1 11 MSRPTLYLIGCASPPVLQMHEWVDRAQEAGWAACVILSEAAATWLTSDQLRHLEESTGHPVRSGPRSPFEPDPLPPAHAAVGVPVTFATLNKIATGVTDTIPVGKVCELAGSGLPVALVPRFHEANMTHPQLPLSMTALSTMGIRVAPTGDADDETFDREFDKALAWLRESL high_GC_Gram+ Tsukamurella_paurometabola_DSM_20162 Tsukamurella_paurometabola_DSM_20162 NC_014158 39836..41014 Munk,A.C.,_Lapidus,A.,_Lucas,S.,_Nolan,M.,_Tice,H.,_Cheng,J.F.,_Del_Rio,T.G.,_Goodwin,L.,_Pitluck,S.,_Liolios,K.,_Huntemann,M.,_Ivanova,N.,_Mavromatis,K.,_Mikhailova,N.,_Pati,A.,_Chen,A.,_Palaniappan,K.,_Tapia,R.,_Han,C.,_Land,M.,_Hauser,L.,_Chang,Y.J.,_Jeffries,C.D.,_Brettin,T.,_Yasawong,M.,_Brambilla,E.M.,_Rohde,M.,_Sikorski,J.,_Goker,M.,_Detter,J.C.,_Woyke,T.,_Bristow,J.,_Eisen,J.A.,_Markowitz,V.,_Hugenholtz,P.,_Kyrpides,N.C._and_Klenk,H.P. NA 1157:>1179 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001966.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4083016Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Tsukamurella_paurometabola_DSM_20162Culture_Collection_ID_::_DSM_20162,_ATCC_8368GOLD_Stamp_ID_::_Gi02254Funding_Program_::_DOE-GEBA_2007Sequencing_Depth_::_8.25x_Sanger;_37.9x_pyrosequenceGene_Calling_Method_::_Prodigal,_GenePRIMPIsolation_Site_::_Cases_of_systemic_infection,_usually_in_association_with_other_diseasesHost_Name_::_Homo_sapiensOxygen_Requirement_::_Aerobecell_Shape_::_Rod-shapedMotility_::_Nonmotilesporulation_::_NonsporulatingTemperature_Range_::_MesophileGram_Staining_::_gram+Biotic_Relationship_::_Free_livingDiseases_::_NoneHabitat_::_Sludge,_Soil##Metadata-END##COMPLETENESS:_full_length. NA 27-JAN-2012 Tsukamurella_paurometabola_DSM_20162_chromosome,_complete_genome. NA Tsukamurellaceae_Rainey_et_al._1997_emend._Zhi_et_al._2009 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Tsukamurella_paurometabola_D5UPS3_TSUPD.gb Tsukamurella_Collins_et_al._1988 296137750 Stand_Genomic_Sci_4_(3),_342-351_(2011) NA NC_014158 NA NA Actinomycetales_Buchanan_1917_(Approved_Lists_1980)_emend._Zhi_et_al._2009 not_Actinobacteria_Cavalier-Smith_2002 21886861 1179 NA genomic_DNA NA DSM_20162 NA Tsukamurella_paurometabolum NA complement Actinobacteridae_Stackebrandt_et_al._1997_emend._Zhi_et_al._2009 NA NA NA Mycobacteria NA NA NA NA NA prokaryotes NA 521096 Bacteria,_Actinobacteria,_Actinobacteridae,_Actinomycetales,_Corynebacterineae,_Tsukamurellaceae,_Tsukamurella Complete_genome_sequence_of_Tsukamurella_paurometabola_type_strain_(no._33) NA NC_014158.1 TCATCCCCTCGCGCTAGGAGCCGCCGCGCCCGGTCCCGGCACGGACGCGAGCGCCCGCCTGACCCAGAGCCCCGCGCAGACGGACATGCTCCCGAAGGATACGAACGCCACGGTGGGCACCGGGGAGCGTCCGGAGATGAGCAACGGTGCGGCCCAGGACAATACCGCCGTTGCCACCCAGTTCGCCGTGGTCGCGGCGCCGATCGTCCGCCCGGGCCGTTCCGGCGGAGCCAGGTCGGTGATCGCGGTCCAGGCGAGCGCGCCCCACGTGGCCGGAAAGACGATCAGGACCACCGCGGTAGCCGCCGCGAGGCTCGCCAGCGATTGGAACTGGAAGGCTAATCCGATCGCGGTCATCGAGACCGCGAGAGAGATCGCGCCGGCCTGGAGCAGCGGCACCCGTCCGTATCGATCCGCGAGGTGGCCGGCCGCGACACACGACGCGATGCTCACCATGCTGATGCCCAGCAGCAGGGCGGTTGCCGTCGTCTCCGAGGCACCCACCTGCTGGAGGACGGTCGGAGCGTAGTAGACCAGCACGCTGATACCGGTGAGCTGCTGCAGGACCGCGATGGCGACCGCGGGCCACCTGATCGTGCCCCCACGCCCCGTGGGCACGCCCACCGGCCTGGTCGGGATCCGGGCGGCGATCGCCTTGGCGTTGAACAGCACGATCGCCGGGGCGATGGACCCCAGTAGCAGAACGATCACGGTGGCGTCGGCGCCGAAGGCGATCGTCGCAGCGGTCGCGCCCGCGTAACCGGCGGCGATCATCGCTTGGTGCAGTGCGGTGTAGCGCCCGGTGGCCCCGGGCGGAGCCAGGAGTCGGAGGAACAGCGGTGTGAGGGCGGCCATCGCCCCGATACCGGCGCCCAGAAGCAGGCGCGCCCCGATCATGACCTGATAGTTCGGTGCGCAGGCGGAGGCGACGGAGCCGGTGATCAGTGCCAGGTTCGACACCGTGAGCGCCGTGATCGGGGTGACCCGGTCCGACAACTCGCCCGCCACCAGTGCGGAGACAGTGGCCGCGGCCGGTAGTGCGGCCGTGGTGAAGCCGAATTCCGTGGCGGTGAGGTTCCATTGCCTAGCCAGGTGCCCCAGCGCAGTAGCGGTCGAGCCCAGGTCGTATCCGAAGGTGAACGAGCCCAGAGCGACGATCAGAGCGATTCGCGCAACCAT > 1155 GSTUM_00002238001 unnamed_protein_product NA CAZ80212.1 NA MSEVKTTPNVSTYQSRQGKREVVANVSLADALAQAKPNPWTTRMFKLYFFLLIAFLNSCINGYDGSLMGGINAMKTYQMYFNMKDVGSSTGLVFSIYTIGNIVGSFFCGPFTDWWGRRWGMFIGASIIILGTCIQAPSTDKAMFIGGRFILGFGVATCATAGPSYVAEMAHPAWRGTITGMYNTFWFIGGVPASWVLWGTESIKSDLSWRLPIWLQAVASGGVIIGCLFCPETPRWLISNGRHEEALKVMTEFHGEGNRESPIVQLTHNEMVREIATQGSDKRWWDYRDLFNSRNSWWRMCCVMGMAFFGQWAGNGAISYFMPVLLKAVGVETPKTQLLYGAILNVISFVISTIGARFTDRLGRRPVLLIATSLFVIEWSIVTALTATYGNEGNANENGSRAAIAFIYLFGITYSFAYTPLQALYPVECLSFETRAKGMGMYNLFVNIAAFFNSYAIPVAWERVQWRFYYLYIAWNIFQAIFIYFFFVETKGRTLEEINEIFDAPYPKKKSLEGHIIVITEHGAAEKYFGLESHD Pezizomycetes Tuber_melanosporum Tuber_melanosporum_(Perigord_truffle) FN430014 138685..138920 Martin,F.,_Kohler,A.,_Murat,C.,_Balestrini,R.,_Coutinho,P.M.,_Jaillon,O.,_Montanini,B.,_Morin,E.,_Noel,B.,_Percudani,R.,_Porcel,B.,_Rubini,A.,_Amicucci,A.,_Amselem,J.,_Anthouard,V.,_Arcioni,S.,_Artiguenave,F.,_Aury,J.M.,_Ballario,P.,_Bolchi,A.,_Brenna,A.,_Brun,A.,_Buee,M.,_Cantarel,B.,_Chevalier,G.,_Couloux,A.,_Da_Silva,C.,_Denoeud,F.,_Duplessis,S.,_Ghignone,S.,_Hilselberger,B.,_Iotti,M.,_Marcais,B.,_Mello,A.,_Miranda,M.,_Pacioni,G.,_Quesneville,H.,_Riccioni,C.,_Ruotolo,R.,_Splivallo,R.,_Stocchi,V.,_Tisserant,E.,_Viscomi,A.R.,_Zambonelli,A.,_Zampieri,E.,_Henrissat,B.,_Lebrun,M.H.,_Paolocci,F.,_Bonfante,P.,_Ottonello,S._and_Wincker,P. NA 0:236 Project:_38847_This_is_a_working_draft_sequence,_generated_bywhole_genome_shotgun._This_release_consists_of_contigsautomatically_generated,_that_have_not_been_checked_further,_andmay_contain_consensus_and_assembly_errors._This_assembly_was_madeat_a_10X_coverage_of_the_genome,_sequenced_by_Sanger_method.Sequencing_and_annotation_efforts_has_been_performed_by_GENOSCOPE. NA 21-APR-2010 Tuber_melanosporum_whole_genome_shotgun_sequence_assembly,_scaffold_124,_strain_Mel28. NA Tuberaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Tuber_melanosporum_D5G6R9_9PEZI.gb truffles 295629846 Nature_464_(7291),_1033-1038_(2010) fungi FN430014 NA NA Pezizales sac_fungi 20348908 236 NA genomic_DNA NA Mel28 NA black_truffle NA forward NA NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 39416 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Pezizomycetes,_Pezizales,_Tuberaceae,_Tuber Perigord_black_truffle_genome_uncovers_evolutionary_origins_and_mechanisms_of_symbiosis NA FN430014.1 ATGTCGGAGGTAAAAACTACCCCCAACGTCTCCACTTACCAGTCTCGCCAAGGCAAGAGGGAGGTTGTTGCAAATGTATCACTCGCCGATGCTTTGGCCCAGGCCAAACCCAATCCATGGACTACGAGGATGTTCAAACTTTACTTCTTCCTGCTTATTGCTTTCCTGAATTCGTGTATCAATGGATACGATGGTTCATTGATGGGAGGTATCAACGCTATGAAGACATATCAAAT > 1156 GSTUM_00011665001 unnamed_protein_product NA CAZ86285.1 NA MPTGYRSIPAEDGTYEEDEERLTILPSSTEPLIRDDGDNGKKGPEDGDEVGPWIWLLTVSAGISGLLFGYDTASISAALLHLAPSLSTPEHAVTTWDKSLITSSTSLGALIGGLFAGLLADYMGRKGVIYVADALFVAGAAWQALSNSVTTMVLGRIIVGLGVGVGSLIVPLYISELSPPSHRGRLVIVNVLFITFGQLIAYGLGIILSPPALSQDASWRYMLGLGGLPAGLQAIIMIFMPETPRWLLQHSRRSEAAKVVAKAYGNLTAREVDQVITGIEAGVSADTSDTLAEKFKLLFSVGGNRRALTISCLLQGLQQACGFNSLMYFSATIFSMVGFKSPTATAMVVAGTNMAATAIAFNLIDRLGRRRILLLSIPGMAIGLLLCSLAFSHLPMLTPNTTSVTNPWSPVLILFMAFYVASYALGIGAIPWVVQSEFFPMRVRGLGTGVATATNWILNFVVGASFLPAVELMYGGAAGLFVFYALVCVAGTVAVWLVYPETKGLRMEEIEEVLREGWGNVGKRVD Pezizomycetes Tuber_melanosporum Tuber_melanosporum_(Perigord_truffle) FN430372 450882..452254 Martin,F.,_Kohler,A.,_Murat,C.,_Balestrini,R.,_Coutinho,P.M.,_Jaillon,O.,_Montanini,B.,_Morin,E.,_Noel,B.,_Percudani,R.,_Porcel,B.,_Rubini,A.,_Amicucci,A.,_Amselem,J.,_Anthouard,V.,_Arcioni,S.,_Artiguenave,F.,_Aury,J.M.,_Ballario,P.,_Bolchi,A.,_Brenna,A.,_Brun,A.,_Buee,M.,_Cantarel,B.,_Chevalier,G.,_Couloux,A.,_Da_Silva,C.,_Denoeud,F.,_Duplessis,S.,_Ghignone,S.,_Hilselberger,B.,_Iotti,M.,_Marcais,B.,_Mello,A.,_Miranda,M.,_Pacioni,G.,_Quesneville,H.,_Riccioni,C.,_Ruotolo,R.,_Splivallo,R.,_Stocchi,V.,_Tisserant,E.,_Viscomi,A.R.,_Zambonelli,A.,_Zampieri,E.,_Henrissat,B.,_Lebrun,M.H.,_Paolocci,F.,_Bonfante,P.,_Ottonello,S._and_Wincker,P. NA 0:>1373 Project:_38847_This_is_a_working_draft_sequence,_generated_bywhole_genome_shotgun._This_release_consists_of_contigsautomatically_generated,_that_have_not_been_checked_further,_andmay_contain_consensus_and_assembly_errors._This_assembly_was_madeat_a_10X_coverage_of_the_genome,_sequenced_by_Sanger_method.Sequencing_and_annotation_efforts_has_been_performed_by_GENOSCOPE. NA 21-APR-2010 Tuber_melanosporum_whole_genome_shotgun_sequence_assembly,_scaffold_89,_strain_Mel28. NA Tuberaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Tuber_melanosporum_D5GP42_9PEZI.gb truffles 295638340 Nature_464_(7291),_1033-1038_(2010) fungi FN430372 NA NA Pezizales sac_fungi 20348908 1373 NA genomic_DNA NA Mel28 NA black_truffle NA complement NA NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 39416 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Pezizomycetes,_Pezizales,_Tuberaceae,_Tuber Perigord_black_truffle_genome_uncovers_evolutionary_origins_and_mechanisms_of_symbiosis NA FN430372.1 TCAGTCAACTCTCTTCCCAACATTCCCCCACCCCTCCCTCAGCACCTCCTCGATTTCCTCCATCCTAAGGCCCTTCGTCTCCGGGTACACCAACCACACCGCCACAGTCCCAGCTACACACACCAGGGCATAAAACACAAATAAGCCGGCCGCACCCCCATACATCAACTCCACTGCAGGCAAGAAACTCGCACCAACGACGAAATTTAGTATCCAGTTTGTCGCTGTAGCCACACCTGTGCCGAGACCGCGTACCCGCATGGGGAAGAACTCGGATTGAACGACCCACGGGATTGCGCCGATGCCTAGCGCGTACGAAGCGACGTAGAATGCCATGAAGAGGATTAGAACCGGTGACCAGGGGTTTGTCACAGATGTGGTGTTTGGGGTTAGCATAGGAAGGTGGGAAAATGCAAGAGAACAGAGGAGGAGACCTATAGCCATTCCTGGGATTGATAGCAAAAGGATACGGCGACGGCCAAGGCGGTCGATGAGATTGAAGGCTATTGCCGTGGCAGCCATATTCGTACCTGCGACTACCATGGCTGTTGCAGTCGGGCTCTTGAACCCGACCATGGAAAATATAGTTGCGGAAAAGTACATTAGCGAGTTAAAGCCGCAGGCTTGCTGAAGGCCCTGTAACAGACAGCTAATGGTCAGTGCGCGCCGGTTCCCGCCGACACTGAAGAGGAGCTTGAATTTCTCGGCAAGAGTGTCAGAGGTATCTGCTGATACCCCGGCTTCTATCCCTGTGATTACTTGGTCTACCTCTCGAGCTGTGAGGTTCCCGTAGGCTTTCGCGACCACCTTCGCGGCTTCACTGCGCCGTGAGTGTTGCAGTAACCAGCGGGGTGTCTCGGGCATGAATATCATTATGATGGCTTGTAAGCCTGCTGGCAGCCCCCCAAGCCCGAGCATATACCTCCAACTGGCATCCTGAGAAAGTGCGGGTGGGGACAGGATGATGCCCAACCCATAGGCAATCAGCTGTCCGAATGTAATGAATAACACGTTTACAATGACGAGTCTCCCACGGTGCGATGGAGGTGATAATTCCGAGATGTAAAGCGGGACGATTAGGCTTCCCACGCCAACGCCTAATCCCACAATAATCCGGCCAAGAACCATTGTAGTGACACTGTTCGAGAGAGCTTGCCAAGCGGCTCCCGCAACGAATAGCGCGTCGGCGACGTAGATGACGCCTTTACGCCCCATGTAATCCGCCAGCAAACCGGCAAATAATCCGCCGATTAGAGCTCCGAGAGAAGTCGACGAGGTAATGAGTGACTTATCCCACGTTGTAACTGCATGTTCTGGGGTAGATAATGATGGCGCCAGATGAAGGAGCGCAGCGGAAATAGATGCAGTATCGT > 1157 UREG_02337 NA hypothetical_protein XP_002542821.1 NA MEDKPNDPEVSVAFNGRSSSPSASSSIAKQEAIREETARGWVNEGKETRKVNNKLRNPLSDLTREELLRDVEEFAIEKGLTDILDDLKNGALISQDPKSFEQLDDLSETERELLRREKTHRWHQPFMMYFMTSQWTSPACAKWGEELTNFPVLCAGSAIVQGMDQTAVNGAQEFYFAEFNVTNVWQQGLLNGAPYLCSAVIGCWTTAPLNRWFGRRGCIFISCLISFASSFWMAAAHTWWNLLLARFLLGFAVGAKSTTTPVYGAECAPANIRGALVMMWQMWTAFGIMLGYIASVAFMDVKVSGIPGFNWRLMLASTAIPPFFVCIQVYLCPESPRWYMMRDRYQSAYDALCKLRPSPLQAARDLYYIHASLRIEQKLREGKRLWREMFGISRNRRAAQSSFFVMFMQQFCGVNAIMYYSSSMFRTAGFSRRDALITSLGCGITNWIFALPAVYTIDTFGRRNLLLTTFPLMSLFLLFTGFSFWIPDLQSRTACVATGIYLFMIVYSPGEGPVPFTYSAEAFPLYIRDIGMSFATATTWGFNFVISLTWPALVDSFKPQGAFGWYAAWNLFGWVFCYFCLPETKALSLEELDQVFSVPTTAHINHYRAMLPWYFKKYIQKGDVPPQKQLYDY bitunicate_ascomycetes Uncinocarpus_reesii_1704 Uncinocarpus_reesii_1704 XM_002542775 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Ma,L.-J.,_Henn,M.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_OLeary,S.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Taylor,J._and_Johannesson,H. NA 0:1902 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003052500).COMPLETENESS:_incomplete_on_both_ends. NA 16-SEP-2009 Uncinocarpus_reesii_1704_conserved_hypothetical_protein,_mRNA. NA Onygenaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Uncinocarpus_reesii_C4JFB5_UNCRE.gb Uncinocarpus 258577278 Unpublished fungi XM_002542775 NA NA Onygenales sac_fungi NA 1902 NA mRNA NA 1704 NA Unicinocarpus_reesii NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 336963 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Onygenaceae,_Uncinocarpus Annotation_of_the_Uncinocarpus_reesii_strain_1704_genome NA XM_002542775.1 ATGGAGGACAAGCCGAACGATCCAGAGGTTTCGGTTGCTTTCAATGGCCGAAGCTCGAGTCCTTCCGCAAGTTCTTCTATTGCGAAACAAGAAGCTATCAGAGAAGAAACCGCACGGGGCTGGGTCAACGAGGGGAAAGAGACAAGGAAGGTCAATAACAAACTCCGAAATCCGTTATCTGATTTGACCAGAGAAGAACTGCTCCGCGATGTCGAGGAGTTCGCCATTGAAAAGGGGCTGACTGATATCCTCGACGATCTGAAAAACGGCGCTCTGATCTCGCAGGACCCAAAGTCGTTTGAGCAGTTGGATGATCTATCGGAAACAGAAAGAGAACTGCTCCGTCGGGAGAAAACGCACAGATGGCATCAACCCTTCATGATGTATTTCATGACTAGTCAGTGGACGTCCCCTGCGTGTGCCAAATGGGGTGAAGAATTGACAAATTTTCCAGTTCTTTGTGCCGGCTCTGCCATCGTCCAAGGTATGGATCAAACCGCAGTAAATGGTGCCCAGGAGTTCTATTTCGCAGAGTTCAACGTCACAAACGTCTGGCAACAAGGCCTGCTTAACGGGGCGCCATATCTTTGCTCTGCGGTGATCGGTTGCTGGACGACAGCGCCTCTAAACCGCTGGTTCGGTCGCCGTGGATGCATTTTTATCTCATGTCTTATCTCTTTTGCAAGCTCGTTCTGGATGGCCGCGGCGCACACTTGGTGGAACCTTCTCCTTGCTCGTTTCTTGCTAGGCTTTGCGGTTGGCGCGAAATCCACAACCACACCTGTGTACGGAGCGGAATGCGCTCCAGCGAATATTCGTGGAGCTCTCGTCATGATGTGGCAGATGTGGACTGCGTTTGGCATTATGCTGGGCTACATCGCATCTGTTGCTTTCATGGACGTAAAGGTTTCTGGGATTCCCGGCTTTAACTGGAGATTAATGTTGGCCTCCACGGCAATTCCCCCATTTTTCGTCTGCATCCAAGTATATCTGTGCCCCGAATCTCCACGATGGTACATGATGCGAGATCGGTACCAAAGCGCTTACGACGCACTTTGCAAACTTCGACCTTCTCCACTTCAAGCTGCTAGAGATTTGTATTATATCCACGCTTCGCTGAGAATAGAACAAAAACTTCGCGAGGGTAAACGGCTCTGGCGTGAAATGTTCGGCATTTCGAGGAATAGACGAGCTGCGCAGTCGTCCTTCTTCGTCATGTTCATGCAACAATTTTGTGGTGTGAACGCCATCATGTACTACTCCTCGTCGATGTTCAGAACCGCGGGCTTTTCGCGACGCGACGCTCTTATTACGTCCTTGGGCTGCGGCATCACCAACTGGATATTTGCGTTGCCTGCTGTGTACACCATCGATACCTTTGGCCGCCGAAATCTGCTCCTAACCACTTTTCCTCTGATGTCGCTTTTCCTGTTATTTACAGGATTTTCCTTCTGGATCCCAGACTTGCAGTCACGAACTGCCTGCGTTGCGACAGGAATTTACCTGTTCATGATCGTATATTCGCCTGGAGAAGGCCCTGTGCCATTCACTTATTCAGCTGAAGCATTCCCCCTGTATATCCGCGATATTGGAATGTCATTCGCAACAGCTACCACCTGGGGTTTCAACTTTGTTATCTCTCTCACCTGGCCCGCTCTGGTCGACTCCTTCAAGCCCCAAGGAGCATTCGGGTGGTATGCTGCGTGGAACCTATTCGGATGGGTCTTTTGCTATTTCTGCCTGCCAGAAACAAAGGCGCTGTCACTTGAAGAATTGGATCAGGTCTTTTCCGTCCCGACAACAGCACATATCAACCATTATCGTGCCATGTTGCCATGGTACTTTAAGAAATATATCCAAAAAGGAGACGTCCCGCCGCAGAAACAACTCTATGATTATTAA > 1158 UREG_02391 NA hypothetical_protein XP_002542875.1 NA MANFGSQTSRYNRLVIVFVALGSLTYGFCASVISSTIGQPGWYAFFELPAQGEPGYATVTTNAIAAANGLFSAGGAVGSLFMMWSCEAWGRKVNIQLGSFLAILGGALQGGAANLKMFQAGRFVSGASTGVLVTACPMYFAEISSPFVRGWLVGHHAIFLVFGYMLACWIGYACYFATGSNPAFAWRFPLCFQILSPLLLLMGSPWLPRSPRWLISKGKYDEALVILRRLRQSKDDPQDLVAREEFYRIKKQVMLEAEKLAATGYGVWTAVVKKKSYRRRMIIGFLTQWGTEFGGPLIILVYTPLSISKSLPQTNSSKGLIYNPLGAWLHDKINSRRKMYIIGLIGVIITTSCLAAMTAEYTGTKNRVGSGFGIFFIFLYVAFQGTFCHTTMYLYVSEIFPTEIRPIGMGFSTFGQFASTIILLQTAPIGFAHVGWRYYLVPIIWSVLFIPVIYFFFPETARLSLEEIARKFGEEVAVDVTTQEEKTLAGTPTSKDLIETGGSQATGRGNENA bitunicate_ascomycetes Uncinocarpus_reesii_1704 Uncinocarpus_reesii_1704 XM_002542829 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Ma,L.-J.,_Henn,M.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_OLeary,S.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Taylor,J._and_Johannesson,H. NA 0:1542 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003052500).COMPLETENESS:_incomplete_on_both_ends. NA 16-SEP-2009 Uncinocarpus_reesii_1704_conserved_hypothetical_protein,_mRNA. NA Onygenaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Uncinocarpus_reesii_C4JFQ7_UNCRE.gb Uncinocarpus 258577386 Unpublished fungi XM_002542829 NA NA Onygenales sac_fungi NA 1542 NA mRNA NA 1704 NA Unicinocarpus_reesii NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 336963 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Onygenaceae,_Uncinocarpus Annotation_of_the_Uncinocarpus_reesii_strain_1704_genome NA XM_002542829.1 ATGGCTAACTTTGGATCTCAGACGAGCCGGTACAACAGGCTGGTCATTGTTTTTGTAGCTTTGGGCTCACTGACATATGGCTTCTGTGCTTCAGTGATCAGTAGCACAATTGGCCAACCCGGATGGTATGCCTTTTTTGAACTGCCCGCCCAGGGTGAACCAGGATACGCCACAGTGACGACAAATGCTATTGCAGCCGCAAATGGCCTTTTCAGTGCTGGCGGAGCTGTAGGCTCCCTCTTCATGATGTGGTCTTGCGAGGCATGGGGTCGTAAAGTCAATATTCAACTTGGCTCTTTTCTTGCAATCCTTGGAGGTGCGTTGCAAGGCGGAGCCGCAAATTTGAAGATGTTTCAAGCCGGTCGTTTTGTGTCTGGTGCCTCCACCGGCGTCCTTGTCACCGCTTGCCCCATGTATTTTGCAGAGATTTCCAGTCCCTTTGTTCGCGGGTGGCTTGTGGGCCACCATGCTATATTTCTCGTCTTCGGATACATGCTAGCTTGTTGGATCGGATACGCGTGCTACTTTGCTACGGGTTCCAATCCGGCATTCGCCTGGAGATTCCCGCTTTGTTTTCAAATATTGAGCCCACTACTTTTGTTAATGGGTTCACCATGGCTACCCCGGTCTCCCAGGTGGCTGATCTCCAAAGGCAAGTATGATGAAGCCTTGGTGATTCTTCGCCGGCTTAGGCAATCGAAGGATGACCCGCAGGATTTGGTGGCCAGAGAAGAATTCTACCGGATCAAAAAACAAGTCATGCTTGAAGCGGAGAAGCTAGCTGCAACCGGTTATGGTGTTTGGACGGCTGTTGTCAAGAAGAAGTCATATCGGAGGAGAATGATAATTGGATTTCTGACTCAATGGGGCACTGAGTTTGGCGGGCCACTTATTATTCTGGTATACACTCCCCTCTCTATATCCAAGTCATTACCACAAACTAACAGCAGTAAAGGCTTGATCTACAACCCCCTTGGAGCATGGCTTCACGATAAGATCAACTCACGCCGGAAGATGTACATCATCGGTCTCATAGGCGTTATCATAACCACGTCTTGTTTAGCTGCAATGACAGCTGAATACACCGGTACCAAGAACCGCGTGGGCAGCGGCTTTGGTATATTCTTCATCTTCCTATACGTAGCTTTCCAAGGGACATTTTGCCACACGACAATGTACCTCTACGTCTCTGAAATCTTCCCCACTGAGATACGCCCTATTGGTATGGGATTTTCAACCTTTGGCCAGTTCGCATCAACAATCATCCTTCTTCAAACCGCGCCGATCGGCTTCGCGCATGTAGGCTGGAGATACTACCTCGTTCCCATCATCTGGTCTGTTCTTTTCATTCCAGTGATATATTTCTTCTTCCCCGAGACTGCCCGACTTAGTTTAGAGGAGATAGCTAGGAAGTTCGGCGAAGAAGTCGCGGTTGACGTCACTACGCAGGAAGAGAAGACGCTAGCCGGGACGCCGACTTCGAAGGATTTGATAGAGACGGGAGGTTCACAAGCAACGGGTAGAGGGAATGAAAATGCGTGA > 1159 UREG_01199 NA potential_glycerophosphoinositol_permease XP_002541683.1 NA MAPTNDIALVSQSPKAEETFPEKVEEQVVAEELENTSKSRWERSWPTIACGAGLFSDGYLNNASSSFPTRFMPEWPIIGSVNTVLRTLYPEAYASSAAVKNVPSIAFAGTVVGQLIFGYLSDHYSRKWSLMASTVLLVIFAALCAGSYGAGGSLSGLFAALTAYRFFLGVGIGGEYPAGSVAAAESTGELKKGHRNRWFIMFTNFQIDFGFVVSSFIPMLLVLIFTENHLRAAWRVMLGLGVLPPLSLFYLRLKLKEPEEFNRERMHKYPIWLIIKFYWWRLFIVSLIWFIYDFSAYAFGIYSSVWLKIVLDDNAPLWKTFGWNTVVTLFYIPGSALGAWVSDWIGPRYCLTLGVAVQGIIGFIMAGCYQWLATAKNVAAFVVVYGLFLSFGELGPGDNIGLVASKTSATAIRGQYYGIAAALGKVGAFVGTYVFPIIQNNAPNEIRAGQDPFFVSSALCLFSAVLAAFLLPHIGQDTITYEDVRFRKYLEENGYDTSTLGNKNGDQSGVQRS bitunicate_ascomycetes Uncinocarpus_reesii_1704 Uncinocarpus_reesii_1704 XM_002541637 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Ma,L.-J.,_Henn,M.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_OLeary,S.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Taylor,J._and_Johannesson,H. NA 0:1542 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003052500).COMPLETENESS:_incomplete_on_both_ends. NA 16-SEP-2009 Uncinocarpus_reesii_1704_potential_glycerophosphoinositol_permease,_mRNA. NA Onygenaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Uncinocarpus_reesii_C4JGK8_UNCRE.gb Uncinocarpus 258575002 Unpublished fungi XM_002541637 NA NA Onygenales sac_fungi NA 1542 NA mRNA NA 1704 NA Unicinocarpus_reesii NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 336963 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Onygenaceae,_Uncinocarpus Annotation_of_the_Uncinocarpus_reesii_strain_1704_genome NA XM_002541637.1 ATGGCACCCACAAACGATATCGCCTTGGTTTCCCAGTCCCCAAAGGCCGAGGAAACGTTTCCGGAGAAAGTCGAAGAGCAGGTCGTTGCTGAAGAACTCGAGAACACGAGCAAATCGCGCTGGGAACGAAGTTGGCCCACTATCGCATGCGGTGCAGGTCTTTTCTCTGATGGTTACCTGAACAACGCAAGTAGCTCGTTCCCAACGCGCTTCATGCCGGAGTGGCCCATTATTGGATCCGTGAACACCGTTCTTCGAACACTTTATCCGGAGGCTTATGCGAGCTCCGCCGCGGTCAAAAATGTCCCATCAATCGCATTTGCGGGCACAGTCGTCGGCCAGCTCATCTTTGGTTACCTAAGTGATCATTACTCGCGAAAATGGTCTTTGATGGCCTCTACGGTCCTGCTGGTCATCTTCGCTGCGCTCTGCGCTGGCTCCTATGGCGCTGGCGGTAGCCTGTCGGGATTATTTGCAGCCTTAACAGCATACCGATTTTTCCTTGGTGTAGGGATCGGCGGAGAGTATCCCGCCGGAAGTGTTGCAGCCGCAGAGAGCACCGGCGAGCTCAAAAAGGGCCACCGGAATCGATGGTTTATCATGTTTACAAACTTCCAGATCGACTTTGGATTCGTCGTGTCATCCTTTATACCTATGCTCCTCGTCCTGATCTTCACCGAAAATCATCTCCGGGCAGCATGGCGCGTGATGTTAGGCTTGGGGGTCCTTCCGCCGTTAAGCTTATTTTATTTGCGGTTAAAGCTGAAAGAGCCAGAGGAGTTCAACCGGGAAAGAATGCATAAATATCCGATTTGGTTGATTATCAAATTCTACTGGTGGAGATTGTTCATTGTCTCGTTGATCTGGTTTATTTACGATTTTTCGGCCTACGCGTTTGGGATATACTCCTCTGTCTGGCTGAAAATAGTTCTTGATGACAATGCTCCGCTGTGGAAAACGTTTGGGTGGAACACGGTTGTCACACTATTCTACATTCCTGGCTCAGCGTTGGGAGCATGGGTAAGCGACTGGATTGGCCCGCGGTACTGTTTGACCCTGGGAGTTGCTGTCCAAGGTATCATCGGATTCATCATGGCTGGGTGCTACCAATGGCTTGCGACTGCTAAGAATGTGGCCGCGTTTGTGGTTGTTTATGGGCTTTTTCTGTCATTTGGGGAGCTTGGCCCTGGGGACAACATCGGTTTGGTAGCTTCAAAAACCAGTGCAACAGCGATTCGAGGCCAATATTATGGGATTGCTGCTGCCTTGGGCAAAGTCGGGGCATTCGTGGGAACTTATGTCTTTCCAATCATTCAAAACAACGCTCCCAACGAAATTCGGGCTGGTCAAGATCCGTTCTTCGTTTCCAGCGCGCTTTGCTTGTTCAGTGCAGTTCTGGCTGCGTTTTTGCTTCCCCATATTGGACAGGACACGATAACATATGAAGATGTTCGGTTTCGCAAGTATCTTGAAGAAAATGGATATGATACAAGCACGCTGGGTAACAAAAATGGCGACCAAAGCGGCGTCCAACGAAGTTGA > 1160 UREG_01986 NA hypothetical_protein XP_002542470.1 NA MEAFDDPEFPEDEKSALRDERKATFWQQTRSLRGAVLVVGALSGVCQGWTQNVPLGKAFNLNLDPQNGSTRDQFVLGALSASVTLASGILGLFISDPIQNHWLGRRGAVAVSAVVSLGATIGVVCSRTEAQIIGCRLLIGAALGAKASVIAPFLAELAPVHMRGALLSTWQISDALGIFLGDVSWKVLDSFKLDPDTEWRFLSATTLIPTIPLMVASYMIPESWMFLMKTREYPQAAEAACLYRRHPIQGYRDIISSHYQMEAEAELMEIRKSTKKEHSVVRQQDEENTPSHPSHAVVDETKPLSERLAHNLPGLCRQFHGPGTDENCPHGYHMNETHFYQRIGQILRDPRCRHALVSGGTVMLTQSLCGINAFAFFSSSLLHAGLSPNFSVILALCFGAVSFGFGLLTPFLSDRLGRTNLVLLGLPVMSVFMFILASLFELDNSAKTPVIMVFTMLFTAVYAFTLGPAAFSLSAESFPSTVREAGMAMCVFINMTSLGIQLLIYPFITGPIGFTASLCIYVRYPANTLL bitunicate_ascomycetes Uncinocarpus_reesii_1704 Uncinocarpus_reesii_1704 XM_002542424 NA Birren,B.,_Lander,E.,_Galagan,J.,_Nusbaum,C.,_Devon,K.,_Ma,L.-J.,_Henn,M.,_Jaffe,D.,_Butler,J.,_Alvarez,P.,_Gnerre,S.,_Grabherr,M.,_Kleber,M.,_Mauceli,E.,_Brockman,W.,_Rounsley,S.,_Young,S.,_LaButti,K.,_Pushparaj,V.,_DeCaprio,D.,_Crawford,M.,_Koehrsen,M.,_Engels,R.,_Montgomery,P.,_Pearson,M.,_Howarth,C.,_Larson,L.,_Luoma,S.,_White,J.,_OLeary,S.,_Kodira,C.,_Zeng,Q.,_Yandava,C.,_Alvarado,L.,_Taylor,J._and_Johannesson,H. NA 0:1593 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003052500).COMPLETENESS:_incomplete_on_both_ends. NA 16-SEP-2009 Uncinocarpus_reesii_1704_predicted_protein,_mRNA. NA Onygenaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Uncinocarpus_reesii_C4JK29_UNCRE.gb Uncinocarpus 258576576 Unpublished fungi XM_002542424 NA NA Onygenales sac_fungi NA 1593 NA mRNA NA 1704 NA Unicinocarpus_reesii NA forward Eurotiomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 336963 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Eurotiomycetes,_Eurotiomycetidae,_Onygenales,_Onygenaceae,_Uncinocarpus Annotation_of_the_Uncinocarpus_reesii_strain_1704_genome NA XM_002542424.1 ATGGAGGCCTTTGACGATCCTGAATTTCCAGAGGATGAGAAATCTGCCCTGCGGGACGAACGGAAAGCGACATTCTGGCAGCAGACGCGGAGTCTCCGCGGCGCGGTCCTGGTCGTTGGAGCGCTTTCAGGAGTTTGTCAGGGGTGGACGCAAAATGTTCCCCTTGGGAAGGCATTTAATCTGAACCTCGATCCGCAAAACGGAAGCACAAGAGATCAATTTGTTCTCGGTGCACTCTCAGCTAGTGTGACACTCGCGTCCGGCATCTTGGGCCTGTTTATTTCTGATCCCATCCAAAACCACTGGCTTGGACGGCGTGGTGCTGTGGCAGTTTCTGCGGTGGTTAGTCTGGGAGCGACAATTGGTGTCGTTTGCTCACGAACCGAAGCCCAGATTATTGGCTGTAGGTTGCTGATTGGAGCAGCTTTGGGAGCCAAAGCGAGTGTAATCGCACCATTTTTGGCGGAACTCGCGCCAGTCCACATGCGCGGGGCCCTCTTGTCGACATGGCAAATATCGGATGCTCTTGGTATATTTCTTGGGGATGTATCCTGGAAAGTGCTGGATTCATTCAAACTGGATCCGGACACAGAATGGCGCTTTCTGAGTGCGACCACTCTAATTCCAACCATTCCTTTAATGGTAGCTTCTTACATGATACCAGAAAGTTGGATGTTCTTGATGAAGACGAGGGAATATCCTCAGGCGGCGGAGGCAGCTTGTCTCTACCGGAGACACCCTATTCAAGGATACCGAGATATCATCTCTAGCCATTATCAAATGGAGGCAGAAGCAGAGTTGATGGAGATTCGCAAAAGCACCAAGAAGGAGCATTCCGTGGTTAGGCAACAAGATGAAGAGAATACACCCAGTCATCCCAGTCATGCTGTTGTGGATGAGACCAAACCGTTATCAGAACGTCTAGCTCACAACTTGCCAGGTTTGTGTAGGCAATTCCACGGACCAGGGACTGATGAGAATTGCCCTCATGGCTATCATATGAATGAGACGCACTTTTACCAGAGGATTGGTCAGATACTTAGAGATCCCCGTTGTCGCCATGCTCTAGTGTCTGGAGGAACTGTGATGCTGACACAATCACTATGCGGAATCAATGCTTTCGCATTCTTTTCGTCTTCACTCTTGCATGCTGGCCTTAGCCCAAACTTTTCCGTGATACTGGCTCTTTGTTTTGGTGCCGTCAGCTTTGGATTTGGTCTATTGACGCCATTTCTGAGTGATCGACTAGGAAGAACTAATTTAGTTCTCCTCGGATTGCCCGTGATGTCTGTGTTCATGTTTATATTGGCATCCCTTTTTGAACTGGACAACAGTGCAAAGACACCTGTTATCATGGTTTTCACAATGCTGTTTACAGCTGTTTATGCTTTTACCCTGGGACCAGCCGCCTTCAGTCTCTCTGCTGAATCCTTTCCAAGTACCGTCCGGGAAGCCGGGATGGCAATGTGCGTCTTCATAAATATGACATCCCTTGGAATCCAACTCTTGATATACCCTTTTATTACTGGCCCAATTGGTTTCACAGCAAGTCTTTGTATCTATGTGAGATACCCTGCCAACACTTTATTGTGA > 1161 UM04478.1 NA hypothetical_protein XP_760625.1 NA MADRDPSLTPDEDKPHSLQSDDKFSPKASNDHAQLHQLHLATRSVVSTEGIIDAAELDQVLDEAAIEAAGQGESNSLYLWTLTFFATIGGLLFGYDTGAISSVLVQVGTDLDNKELTDGNKEFITSALTVGAIISALCAGVVADKFGRKWTLVICDIMFIVGAVIQAAAHKKWDVVGGRFVLGLGIGAAAQIVPVYIQELAPARARGRLTCLNSIAVTFGQVVATAIGAGFEHVSSGWRWIIALGAFPPIIQLIGIHFFMSESPRYLVKQRREDEAARALTRIYPLATPEQINAKLGVLKKHIQTEDAPLRYRIVKVWTDVPTRRAVFLTSMVLASQQLSGFNSLMYFSGTLFKSAGLKQPIATSLIVSGANFLCTFIPLKYIDRFGRRRFLLATMPCVIIFLVCTAGIFAKMLQPTNQRLVEGYPYPTSYTSAMLVFMVLYVCSYATGLGNVPWQQGEFFSTETRMIGTSISTAVNWAANLVISSTFLSLMNAITPSGAFGFYAGLTFVFLLIVYFLYPETSLLSLEEVRTTLNGGFNVKKSLKVRKEKIALWNTQKQAAKAETAA Ustilaginomycetidae Ustilago_maydis_521 Ustilago_maydis_521 XM_755532 NA Birren,B.,_Nusbaum,C.,_Abebe,A.,_Abouelleil,A.,_Adekoya,E.,_Ait-zahra,M.,_Allen,N.,_Allen,T.,_An,P.,_Anderson,M.,_Anderson,S.,_Arachchi,H.,_Armbruster,J.,_Bachantsang,P.,_Baldwin,J.,_Barry,A.,_Bayul,T.,_Blitshsteyn,B.,_Bloom,T.,_Blye,J.,_Boguslavskiy,L.,_Borowsky,M.,_Boukhgalter,B.,_Brunache,A.,_Butler,J.,_Calixte,N.,_Calvo,S.,_Camarata,J.,_Campo,K.,_Chang,J.,_Cheshatsang,Y.,_Citroen,M.,_Collymore,A.,_Considine,T.,_Cook,A.,_Cooke,P.,_Corum,B.,_Cuomo,C.,_David,R.,_Dawoe,T.,_Degray,S.,_Dodge,S.,_Dooley,K.,_Dorje,P.,_Dorjee,K.,_Dorris,L.,_Duffey,N.,_Dupes,A.,_Elkins,T.,_Engels,R.,_Erickson,J.,_Farina,A.,_Faro,S.,_Ferreira,P.,_Fischer,H.,_Fitzgerald,M.,_Foley,K.,_Gage,D.,_Galagan,J.,_Gearin,G.,_Gnerre,S.,_Gnirke,A.,_Goyette,A.,_Graham,J.,_Grandbois,E.,_Gyaltsen,K.,_Hafez,N.,_Hagopian,D.,_Hagos,B.,_Hall,J.,_Hatcher,B.,_Heller,A.,_Higgins,H.,_Honan,T.,_Horn,A.,_Houde,N.,_Hughes,L.,_Hulme,W.,_Husby,E.,_Iliev,I.,_Jaffe,D.,_Jones,C.,_Kamal,M.,_Kamat,A.,_Kamvysselis,M.,_Karlsson,E.,_Kells,C.,_Kieu,A.,_Kisner,P.,_Kodira,C.,_Kulbokas,E.,_Labutti,K.,_Lama,D.,_Landers,T.,_Leger,J.,_Levine,S.,_Lewis,D.,_Lewis,T.,_Lindblad-toh,K.,_Liu,X.,_Lokyitsang,T.,_Lokyitsang,Y.,_Lucien,O.,_Lui,A.,_Ma,L.J.,_Mabbitt,R.,_Macdonald,J.,_Maclean,C.,_Major,J.,_Manning,J.,_Marabella,R.,_Maru,K.,_Matthews,C.,_Mauceli,E.,_Mccarthy,M.,_Mcdonough,S.,_Mcghee,T.,_Meldrim,J.,_Meneus,L.,_Mesirov,J.,_Mihalev,A.,_Mihova,T.,_Mikkelsen,T.,_Mlenga,V.,_Moru,K.,_Mozes,J.,_Mulrain,L.,_Munson,G.,_Naylor,J.,_Newes,C.,_Nguyen,C.,_Nguyen,N.,_Nguyen,T.,_Nicol,R.,_Nielsen,C.,_Nizzari,M.,_Norbu,C.,_Norbu,N.,_Odonnell,P.,_Okoawo,O.,_Oleary,S.,_Omotosho,B.,_Oneill,K.,_Osman,S.,_Parker,S.,_Perrin,D.,_Phunkhang,P.,_Piqani,B.,_Purcell,S.,_Rachupka,T.,_Ramasamy,U.,_Rameau,R.,_Ray,V.,_Raymond,C.,_Retta,R.,_Richardson,S.,_Rise,C.,_Rodriguez,J.,_Rogers,J.,_Rogov,P.,_Rutman,M.,_Schupbach,R.,_Seaman,C.,_Settipalli,S.,_Sharpe,T.,_Sheridan,J.,_Sherpa,N.,_Shi,J.,_Smirnov,S.,_Smith,C.,_Sougnez,C.,_Spencer,B.,_Stalker,J.,_Stange-thomann,N.,_Stavropoulos,S.,_Stetson,K.,_Stone,C.,_Stone,S.,_Stubbs,M.,_Talamas,J.,_Tchuinga,P.,_Tenzing,P.,_Tesfaye,S.,_Theodore,J.,_Thoulutsang,Y.,_Topham,K.,_Towey,S.,_Tsamla,T.,_Tsomo,N.,_Vallee,D.,_Vassiliev,H.,_Venkataraman,V.,_Vinson,J.,_Vo,A.,_Wade,C.,_Wang,S.,_Wangchuk,T.,_Wangdi,T.,_Whittaker,C.,_Wilkinson,J.,_Wu,Y.,_Wyman,D.,_Yadav,S.,_Yang,S.,_Yang,X.,_Yeager,S.,_Yee,E.,_Young,G.,_Zainoun,J.,_Zembeck,L.,_Zimmer,A.,_Zody,M._and_Lander,E. NA 0:1704 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_101123).COMPLETENESS:_incomplete_on_both_ends. NA 25-APR-2006 Ustilago_maydis_521_hypothetical_protein_(UM04478.1)_partial_mRNA. NA Ustilaginaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Ustilago_maydis_Q4P5Y5_USTMA.gb Ustilago 71020788 Unpublished fungi XM_755532 NA NA Ustilaginales basidiomycetes NA 1704 14 mRNA NA 521 NA Ustilago_maydis NA forward NA NA NA Dikarya NA Ustilaginomycotina NA NA NA NA eukaryotes NA 237631 Eukaryota,_Fungi,_Dikarya,_Basidiomycota,_Ustilaginomycotina,_Ustilaginomycetes,_Ustilaginales,_Ustilaginaceae,_Ustilago The_genome_sequence_of_Ustilago_maydis NA XM_755532.1 ATGGCCGACCGTGATCCCAGCCTCACTCCCGACGAGGACAAACCTCACTCTCTCCAGTCTGACGACAAGTTCTCGCCCAAAGCATCCAACGACCACGCTCAGCTCCACCAACTTCACCTCGCTACTCGCTCTGTTGTCTCCACAGAGGGCATCATCGATGCAGCCGAACTTGATCAAGTCCTGGACGAAGCCGCCATCGAGGCTGCTGGCCAGGGCGAGAGCAACAGTCTCTACCTCTGGACACTCACCTTCTTCGCCACCATTGGCGGTCTCTTGTTTGGCTACGACACTGGTGCCATATCCAGCGTGCTTGTCCAAGTGGGCACTGATCTAGACAACAAAGAGCTGACCGATGGCAACAAGGAATTCATCACCTCGGCACTCACCGTCGGCGCCATCATCTCTGCCCTTTGCGCCGGTGTCGTGGCAGACAAGTTCGGCCGAAAATGGACGCTTGTCATTTGTGATATCATGTTCATTGTAGGCGCCGTCATTCAAGCTGCTGCCCACAAGAAGTGGGACGTTGTGGGTGGAAGATTTGTTCTCGGTCTCGGAATCGGCGCAGCTGCTCAGATCGTGCCCGTATACATCCAAGAACTGGCTCCGGCTCGAGCGCGAGGTCGTCTCACGTGCCTAAATAGCATCGCCGTCACCTTTGGCCAGGTCGTAGCTACCGCCATCGGCGCCGGTTTTGAACATGTCTCTTCTGGCTGGCGCTGGATCATTGCCCTCGGCGCCTTCCCTCCTATCATCCAACTCATTGGTATTCACTTTTTCATGTCAGAGTCCCCGCGCTATCTCGTCAAGCAACGAAGAGAGGACGAAGCCGCGCGAGCCCTCACCCGTATCTATCCTCTCGCCACCCCCGAGCAGATCAACGCAAAGCTTGGCGTTCTCAAGAAGCACATCCAAACCGAGGACGCTCCCCTCCGCTACCGAATCGTCAAGGTCTGGACCGATGTACCCACTCGTAGAGCCGTCTTCCTAACTTCCATGGTTCTAGCCTCACAACAACTTTCAGGCTTCAACTCCCTCATGTACTTTTCTGGCACCTTGTTCAAGTCGGCCGGGCTCAAGCAACCGATCGCAACCAGTCTCATCGTCAGCGGAGCCAACTTCCTCTGCACTTTCATCCCTCTCAAGTACATTGATCGTTTCGGCCGTCGCCGCTTCCTTCTCGCCACGATGCCCTGTGTCATTATTTTCTTGGTTTGCACCGCCGGAATCTTTGCAAAGATGCTCCAACCCACCAACCAGCGCCTCGTCGAGGGTTATCCGTATCCAACGTCGTACACCTCGGCCATGCTTGTCTTTATGGTTCTCTACGTCTGCTCGTATGCCACCGGTCTTGGCAACGTACCTTGGCAACAAGGCGAGTTCTTCTCCACCGAGACGCGCATGATCGGTACCTCTATCTCTACCGCAGTCAACTGGGCGGCCAACCTCGTCATCTCTTCGACCTTCTTGAGCCTTATGAATGCCATCACTCCTTCCGGTGCTTTTGGCTTCTACGCAGGCCTCACATTTGTCTTCCTTCTCATTGTTTACTTCCTTTACCCTGAGACCTCGCTGTTGTCGCTCGAGGAGGTGCGTACCACTCTCAACGGCGGCTTCAACGTCAAAAAGAGTCTCAAGGTACGAAAGGAGAAGATCGCCCTTTGGAACACTCAGAAGCAGGCTGCTAAAGCCGAGACCGCCGCTTAG > 1162 Kpol_1019p31 similar_to_Saccharomyces_cerevisiae_SNF3_(YDL194W)_and_RGT2_(YDL138W) hypothetical_protein XP_001643768.1 NA MKNQETNEAELHFWSRLRRNIVDIFHGDDMLHIRQRKLDDEYGIEVVKDEQNIYSTLNPNVQTKHSLRLGDNFDKLTDNVEMKLQDKDMEDSSNSNSDPTPAETTHRIIDDCSSYDNTSILFGDPPQRQSNRVTILVGFFVAVGGFLYGYDTGLINSIVDMQYVREHFSSNHDNFTAEQLAIIVSFLSLGTFFGALTAPVISDRCGRKTVIILSTLIIFLTGNTIQISSNGVVLLVIGRVISGFSVGLISAVVPLYQSEAAIKYLRGAIISTFQWAITWGLLVSSAVSQATYTIDKAASYRIPIGLQYIWACFLGIGMFFLPESPRYYVLKDKLDKAASSLSFLRRVPVHDSGLLEELVEIKATYDYEMSFGSSTLLDCFRSSKTRPKQTLRMFTGILLQVFQQFSGINFIFYYGVNFFSRTGIENSYRISLITYAVNVAFTIPGLFLVDRVGRRNLLLYGGIGMAISNFIIAIVSFADEHVINNRVMIAFICIFIVCFTSSWGIIVWVLSAELYPLGVRSKCVAICAASNWLVNFICAFITPYIVNITSHTYTIGPRIFFLWGALNAVGVVVVYFTVYETKGLTLEEIDELFSECPNSISSPKWNKKIRERKLAKRNQHNGGKMRDYYYENNATPNVLTSSILENESEFQNRKIKHIKDFDGTFAMSVSEGTTKMAQSCHERQGTMSSTTDFDEFATNTVDLGNGFALNPYSRGPPSIPTDSSDESDESNEPGRDTTAATNNNGINKNNKNNNNNNINNNNNNNNNKSNDDDDDDDDDNRNNNNNYNNIHINNLHDYSNYLGQEIDYTRSFESTTTNPNLSRATTANQSIFE Saccharomycetes Vanderwaltozyma_polyspora_DSM_70294 Vanderwaltozyma_polyspora_DSM_70294 XM_001643718 NA Scannell,D.R.,_Frank,A.C.,_Conant,G.C.,_Byrne,K.P.,_Woolfit,M._and_Wolfe,K.H. NA 0:2502 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001834632).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Vanderwaltozyma_polyspora_DSM_70294_hypothetical_protein_(Kpol_1019p31)_partial_mRNA. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Vanderwaltozyma_polyspora_A7TPC3_VANPO.gb Vanderwaltozyma 156840778 Proc._Natl._Acad._Sci._U.S.A._104_(20),_8397-8402_(2007) fungi XM_001643718 NA NA budding_yeasts sac_fungi 17494770 2502 NA mRNA NA DSM_70294 NA Vanderwaltozyma_sp._SA20S10 NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 436907 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Vanderwaltozyma Independent_sorting-out_of_thousands_of_duplicated_gene_pairs_in_two_yeast_species_descended_from_a_whole-genome_duplication NA XM_001643718.1 ATGAAAAATCAGGAAACTAATGAAGCTGAGCTTCATTTTTGGTCACGATTGAGGAGGAATATAGTGGATATATTTCATGGAGATGATATGTTACATATACGGCAGAGGAAGTTAGATGATGAGTATGGGATAGAGGTTGTTAAGGATGAGCAGAATATATACTCTACTTTAAATCCCAATGTTCAGACGAAACATTCGTTACGTCTTGGAGATAATTTTGATAAGTTAACAGATAATGTAGAGATGAAATTGCAAGATAAAGATATGGAAGATAGTTCTAACAGTAATTCGGATCCTACACCTGCAGAAACTACACATAGGATAATTGATGATTGTTCTTCATATGATAATACTTCGATACTGTTTGGTGATCCGCCCCAACGACAATCGAATAGAGTTACAATTTTAGTAGGTTTTTTCGTTGCTGTGGGTGGATTTTTGTATGGTTACGATACTGGTTTAATTAATAGCATTGTTGATATGCAATATGTGCGAGAACACTTTTCGTCAAATCATGATAATTTTACTGCCGAGCAATTGGCTATTATTGTTTCTTTCCTTTCTTTGGGGACTTTCTTTGGGGCTTTAACTGCTCCTGTAATCTCAGATAGATGTGGTAGAAAGACAGTTATTATTCTAAGTACGTTGATTATTTTCCTTACTGGTAACACAATTCAAATCTCTTCAAATGGGGTTGTTTTATTAGTCATTGGAAGAGTGATATCCGGGTTTTCAGTTGGATTGATATCGGCAGTGGTTCCATTATATCAGAGTGAAGCTGCCATTAAATATTTAAGAGGTGCCATTATTTCAACATTTCAGTGGGCCATTACTTGGGGTCTACTAGTCTCAAGTGCAGTCAGTCAAGCCACATACACAATAGACAAAGCTGCATCGTATAGAATTCCGATAGGTCTTCAGTATATTTGGGCTTGTTTCTTAGGTATCGGTATGTTCTTCTTACCTGAGAGTCCAAGATATTATGTCTTGAAAGATAAGCTCGATAAAGCAGCAAGTTCTTTATCGTTCTTAAGACGTGTACCAGTTCATGATTCTGGTTTGCTGGAGGAATTAGTTGAAATTAAAGCTACATACGACTATGAGATGTCATTTGGTTCCTCAACTCTACTTGATTGTTTCAGATCCAGCAAAACCAGACCTAAACAAACATTAAGAATGTTTACCGGTATATTATTACAGGTATTTCAACAATTTTCAGGCATTAATTTCATTTTCTACTATGGGGTTAATTTTTTTAGTAGAACAGGAATAGAAAATAGTTACAGAATTTCATTAATTACTTATGCAGTAAATGTCGCATTTACCATCCCAGGTCTATTTTTAGTTGATCGTGTTGGTAGAAGAAATTTATTGTTATATGGTGGCATTGGTATGGCTATCTCGAATTTTATTATCGCTATTGTCAGTTTTGCTGATGAGCATGTAATAAATAATAGAGTAATGATTGCTTTCATCTGTATTTTCATTGTATGCTTTACTTCTAGTTGGGGTATTATAGTTTGGGTCCTTTCTGCGGAACTATATCCATTGGGTGTGAGATCAAAATGTGTTGCTATCTGTGCGGCATCAAATTGGTTAGTAAATTTCATTTGTGCATTTATTACACCTTATATTGTGAATATTACATCACACACGTATACAATTGGGCCAAGAATTTTCTTTCTCTGGGGAGCTTTGAATGCTGTTGGTGTTGTAGTAGTTTATTTTACTGTTTATGAAACGAAGGGGCTAACATTAGAAGAGATTGACGAATTATTCTCTGAATGCCCAAACAGTATATCATCTCCCAAATGGAATAAGAAGATAAGGGAAAGAAAGTTGGCTAAGAGGAATCAACACAATGGAGGTAAGATGAGAGACTATTACTACGAGAATAATGCCACACCAAATGTATTGACAAGTTCTATATTAGAAAATGAGTCTGAATTTCAAAATAGGAAGATTAAGCATATCAAGGATTTTGATGGAACATTTGCTATGTCAGTAAGTGAAGGTACTACAAAGATGGCCCAAAGTTGTCATGAAAGACAAGGAACTATGTCATCAACTACTGATTTTGATGAGTTTGCTACGAATACGGTAGATTTGGGTAATGGGTTTGCATTAAACCCATACAGTAGAGGCCCTCCTTCTATTCCTACGGATTCTAGTGATGAAAGTGATGAAAGCAATGAACCTGGAAGAGATACAACTGCTGCTACTAATAATAATGGCATTAATAAAAACAACAAAAACAACAACAACAATAATATTAATAATAATAATAATAATAATAATAATAAAAGTAATGACGATGATGACGATGATGACGATGATAACAGAAACAACAATAATAATTATAATAACATTCACATAAACAATTTGCATGACTATTCCAATTACCTTGGACAAGAAATTGATTACACAAGAAGTTTCGAGAGCACAACTACTAATCCTAATCTTTCTCGAGCTACGACAGCAAATCAAAGCATTTTTGAATAA > 1163 Kpol_281p3 similar_to_Ashbya_gossypii_AEL042C hypothetical_protein XP_001642360.1 NA MGSFKDTILMKNIKYEGKLYERFPKIYNIYVIGFVSCISGLMFGFDISSMSSMIGTDAYKQYFGSPDATKQGGITSSMAAGSFVGSLLSPLFSDVFGRRVSLHICSTFWLIGATLQCASQDLAMLVVGRLVSGIGIGFGSAVAPVYCSEVAPPKIRGAIAGLFQLSVTLGILILYYVGYGAHFITSASSFRLTWGIQLVPGFVLLVATFFLPESPRWLANKGFWEKATYNICRINNTDPDNISEEVAIQLEEMNTQVMDDKEADSFTYANLFRKKTIKKTIVGMSAQMWQQLSGINVMMYYIVYIFQMAGYSGNAVLVSGSINYILNVAMTIPALFVIDKLGRRPILIVGGILMFVWLFAVAGLLSVYSVPVPGGVGGNETVNIMIPDNHKHAAKGVIACCYLFVCTFAPTWGIGIWIYCSEIFNNSERAKGSSLSAAVNWIFNFALGLFVPSAFQNITWKTYLMFGIFSVALTIHTFLMFPETKGKTLEEIDQMWEANIPAWRSASWKPTLPSHLHDDFKNLHTGESSSNFVEDDGKAEMEKPVVDHIESTDKSL Saccharomycetes Vanderwaltozyma_polyspora_DSM_70294 Vanderwaltozyma_polyspora_DSM_70294 XM_001642310 NA Scannell,D.R.,_Frank,A.C.,_Conant,G.C.,_Byrne,K.P.,_Woolfit,M._and_Wolfe,K.H. NA 0:1671 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_001834518).COMPLETENESS:_incomplete_on_both_ends. NA 26-FEB-2008 Vanderwaltozyma_polyspora_DSM_70294_hypothetical_protein_(Kpol_281p3)_partial_mRNA. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Vanderwaltozyma_polyspora_A7TTA5_VANPO.gb Vanderwaltozyma 156836614 Proc._Natl._Acad._Sci._U.S.A._104_(20),_8397-8402_(2007) fungi XM_001642310 NA NA budding_yeasts sac_fungi 17494770 1671 NA mRNA NA DSM_70294 NA Vanderwaltozyma_sp._SA20S10 NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 436907 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Vanderwaltozyma Independent_sorting-out_of_thousands_of_duplicated_gene_pairs_in_two_yeast_species_descended_from_a_whole-genome_duplication NA XM_001642310.1 ATGGGTAGTTTCAAGGACACTATTCTTATGAAAAATATCAAGTATGAAGGCAAACTATATGAAAGATTCCCCAAAATTTACAACATTTATGTCATTGGTTTCGTTTCCTGTATCTCTGGTCTAATGTTTGGCTTTGATATTTCATCTATGTCATCTATGATTGGTACTGACGCTTACAAACAATACTTTGGATCTCCAGATGCTACTAAACAAGGTGGTATCACTTCTTCTATGGCTGCCGGTTCATTTGTTGGTTCCTTGCTGTCACCTTTATTTTCTGACGTTTTTGGTAGAAGAGTGTCACTTCACATTTGTTCAACTTTCTGGCTTATCGGTGCCACCTTACAATGTGCTTCTCAAGATCTTGCAATGTTGGTAGTTGGCAGATTAGTGTCTGGTATTGGTATTGGGTTTGGCTCTGCTGTAGCCCCAGTTTACTGTTCTGAAGTCGCACCTCCAAAAATCAGAGGTGCCATTGCTGGTCTTTTCCAATTATCTGTCACCCTTGGTATCCTTATCCTATACTACGTTGGTTATGGTGCCCATTTTATTACATCTGCTTCATCTTTCAGACTAACTTGGGGCATTCAATTAGTTCCAGGGTTTGTATTGTTAGTAGCGACTTTTTTCTTGCCTGAATCACCAAGATGGTTGGCTAACAAGGGATTCTGGGAGAAAGCAACCTACAATATCTGTAGAATTAATAATACGGATCCTGATAATATTTCTGAAGAAGTTGCCATTCAACTAGAAGAGATGAACACTCAAGTAATGGACGATAAAGAAGCTGATTCGTTCACTTACGCTAATCTATTCAGAAAGAAGACTATCAAGAAGACTATAGTTGGTATGTCTGCTCAAATGTGGCAACAACTTTCTGGTATTAATGTTATGATGTATTATATTGTTTATATTTTCCAAATGGCTGGTTATTCAGGGAATGCAGTATTGGTGTCAGGGTCTATCAACTATATTTTAAATGTCGCTATGACCATTCCAGCGTTATTTGTTATCGACAAGCTTGGTAGAAGACCTATTTTAATAGTTGGTGGTATCTTGATGTTTGTTTGGTTATTTGCTGTCGCAGGTTTATTGTCTGTTTACTCTGTACCTGTCCCAGGTGGTGTTGGTGGTAATGAAACAGTTAACATCATGATCCCTGATAATCATAAACATGCTGCCAAGGGTGTTATTGCCTGTTGTTACTTATTCGTTTGTACTTTTGCTCCAACATGGGGTATTGGTATTTGGATTTACTGTTCTGAAATTTTCAACAACAGCGAGAGAGCAAAGGGTTCTTCATTGTCAGCAGCTGTTAACTGGATCTTTAATTTTGCCTTGGGTTTATTTGTTCCAAGTGCATTCCAAAATATTACTTGGAAAACATATCTGATGTTTGGTATTTTCTCGGTTGCACTAACTATTCATACATTTTTAATGTTCCCTGAAACCAAGGGTAAGACATTGGAAGAAATTGATCAAATGTGGGAAGCAAATATCCCAGCCTGGAGATCAGCTTCATGGAAACCAACATTGCCATCCCATCTTCATGATGACTTTAAGAACTTACACACTGGAGAAAGTTCATCTAATTTTGTAGAGGATGATGGAAAGGCAGAAATGGAAAAGCCAGTAGTTGACCATATCGAAAGCACCGACAAATCGTTGTAA > 1164 VDBG_00966 NA myo-inositol_transporter_1 XP_003009283.1 NA MNDSEDAVHYREVDLSRIEAPSTHKTYIICAFAAFGGICFGYQTAVMSGLLGTPYFIELYTNVDFDYATYAPVDKKTTEFGLTASHKALMTSILACGVLVGALVAGDMADTFGRRKNVILGSLILCVGNALQMCAEHHVVLFVLGRLIAGLGLGFISAVIVMYISEIAPKRCRGAFIAAYQFCISLGVLLANSAVYSAEGRDDSGAYRIPIGVQFLWAMILGIGLAVLPESPRYLIKNGQISEAKRALARVRGQPIDSECVQDEIAELVASREYELYLIPRTSYIGSWLLCFKGPIRNGSSPARRTILGMSIQMMQQLTGINFIFYFGVTFFQQLGAVDNPFLIALIFTLVNVCSTPISFFTIDRFGRRPLLIYGAIGMIIIQFTIACIGITEGRRDQNNLFAVRAMIALICMNIFCFAITWGPTAWVVVGESFSLPMRSRGIGISTASNWFWNCVIATCTPFLVGGDKGEANLGPKIFFILGSTCCLSLAFAYFLVPEMKDLSLEQIEMMMDESSPRCSPAYRVLKGFTQMRGDRVLRQMRSVSADCKSSKLTPRSHVAEESGR Sordariomycetes Verticillium_albo-atrum_VaMs.102 Verticillium_albo-atrum_VaMs.102 XM_003009237 NA Ma,L.-J.J.,_Klosterman,S.J.,_Subbarao,K.,_Dobinson,K.,_Veronese,P.,_Kang,S.,_Gold,S.E.,_Young,S.,_Jaffe,D.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Chen,Z.,_Alvarado,L.,_Kodira,C.D.,_Lander,E.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1698 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315038).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2010 Verticillium_albo-atrum_VaMs.102_myo-inositol_transporter_1,_mRNA. NA Plectosphaerellaceae_W.Gams,_Summerbell_&_Zare_2007 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Verticillium_albo_C9S7X2_VERA1.gb Verticillium 302422905 Unpublished fungi XM_003009237 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 1698 NA mRNA NA VaMs.102 NA Verticillium_alboatrum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 526221 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Plectosphaerellaceae,_mitosporic_Plectosphaerellaceae,_Verticillium Annotation_of_Verticillium_albo-atrum_VaMs.102 NA XM_003009237.1 ATGAACGACTCTGAGGATGCAGTTCACTATCGTGAAGTCGACCTCAGCCGTATAGAAGCACCGTCGACGCATAAGACATACATCATCTGCGCCTTTGCTGCCTTTGGCGGCATTTGTTTCGGGTACCAAACGGCTGTCATGTCCGGGCTCCTCGGCACCCCCTACTTCATCGAGCTGTACACCAATGTCGATTTCGATTATGCAACCTATGCGCCCGTTGACAAGAAGACGACCGAGTTCGGCCTTACCGCCAGCCACAAGGCGCTCATGACCAGCATTCTGGCTTGTGGTGTCTTGGTTGGAGCTCTCGTGGCTGGCGACATGGCAGATACCTTCGGACGGCGAAAGAATGTCATCCTCGGGAGCCTGATTCTCTGCGTTGGAAATGCCCTGCAGATGTGCGCCGAACACCATGTTGTATTGTTCGTGCTGGGGAGGCTGATCGCCGGCCTTGGCCTTGGCTTCATCTCGGCCGTCATTGTCATGTACATCTCGGAGATTGCCCCTAAGCGGTGTCGAGGGGCATTTATAGCCGCGTATCAGTTTTGTATCAGCTTGGGGGTTCTGCTGGCCAACTCGGCCGTGTACTCGGCCGAGGGTCGAGACGATAGTGGCGCCTATAGGATTCCGATAGGCGTCCAGTTCTTGTGGGCTATGATCCTAGGCATTGGCCTCGCCGTGTTGCCCGAATCGCCTCGATACTTGATTAAGAATGGTCAGATTTCGGAAGCCAAGAGGGCTTTGGCTCGCGTCCGGGGACAACCTATCGACTCTGAATGTGTACAAGATGAGATCGCCGAGCTAGTAGCCAGCCGCGAGTACGAGTTGTATCTCATCCCTCGCACCAGCTACATTGGCTCCTGGCTCCTGTGCTTCAAGGGTCCGATACGAAACGGCAGCAGTCCTGCTCGGCGCACGATACTCGGTATGTCCATCCAAATGATGCAGCAGCTGACGGGGATCAACTTTATATTCTACTTTGGCGTGACGTTCTTTCAGCAACTGGGCGCTGTCGACAATCCCTTTCTCATCGCGCTCATCTTCACGCTGGTCAACGTCTGCTCCACGCCCATCTCATTTTTCACCATAGACAGGTTCGGTCGGCGTCCTCTGCTCATCTACGGCGCCATCGGGATGATCATCATTCAATTCACGATTGCGTGCATCGGCATCACGGAGGGACGGCGCGATCAAAACAACCTCTTCGCTGTCAGGGCCATGATTGCCCTCATCTGCATGAACATATTCTGCTTCGCCATTACGTGGGGGCCAACCGCCTGGGTGGTAGTCGGCGAGTCGTTCTCCCTGCCCATGCGCTCGCGCGGCATCGGAATCTCGACGGCGTCAAACTGGTTCTGGAACTGCGTTATCGCCACGTGCACACCCTTTCTCGTCGGCGGGGACAAGGGCGAGGCGAACCTGGGGCCCAAGATCTTCTTCATTCTCGGCTCGACCTGCTGCCTCTCTCTTGCCTTTGCGTACTTTTTGGTGCCCGAGATGAAGGACTTGTCGCTGGAGCAGATCGAGATGATGATGGATGAGTCATCGCCTAGGTGCTCGCCGGCGTACAGAGTGCTCAAGGGGTTTACCCAGATGCGTGGCGACAGGGTGTTGCGCCAGATGCGGTCTGTTTCTGCTGATTGCAAGAGCAGCAAGTTGACGCCGCGATCTCATGTAGCCGAAGAAAGTGGTCGCTAA > 1165 VDBG_03180 NA quinate_permease XP_003007041.1 NA MGWSTHASGTLDPPEVRNWRIHLVALVASCSALAMGYDTAVIGGTMALDSFRRDFDLAGKSQSHRDTVQGNIVSTFQAGCFFGALLTFPLAEKWGRRKTVMLAALVFLIGGTLMTAAHGKLEMIIAGRAVAGLGIGASSLVVPVYIAETAPPSIRAERILCRLRGLDRDHEYVRREMGEIRQQVEERSTMRMSKKQQFKKLFQKGTRNRMGIGMALMFLQSFTGVNIITYYAPRIFETLGVSGTSLRLFSTGFYGIAKTLGMICFTFYVVEKVGRRKGLIWGAALGCIPMWYIGGYVMRADPAGAAAAGVVNRDAWGYLAMVCVYVNGFIICATWQGITWTYCSEIFPLDIRMLCVAITTADTWLGSFIIARSTPYMISDLGYGAYFFFSAILVCMGIWAFIFVPETKGITLEEMDALFMKPMHKAVWAQLRGKELVPERTDSVSDEKKYIESEQFERKE Sordariomycetes Verticillium_albo-atrum_VaMs.102 Verticillium_albo-atrum_VaMs.102 XM_003006995 NA Ma,L.-J.J.,_Klosterman,S.J.,_Subbarao,K.,_Dobinson,K.,_Veronese,P.,_Kang,S.,_Gold,S.E.,_Young,S.,_Jaffe,D.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Chen,Z.,_Alvarado,L.,_Kodira,C.D.,_Lander,E.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1383 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315036).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2010 Verticillium_albo-atrum_VaMs.102_quinate_permease,_mRNA. NA Plectosphaerellaceae_W.Gams,_Summerbell_&_Zare_2007 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Verticillium_albo_C9SDB9_VERA1.gb Verticillium 302418419 Unpublished fungi XM_003006995 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 1383 NA mRNA NA VaMs.102 NA Verticillium_alboatrum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 526221 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Plectosphaerellaceae,_mitosporic_Plectosphaerellaceae,_Verticillium Annotation_of_Verticillium_albo-atrum_VaMs.102 NA XM_003006995.1 ATGGGTTGGAGCACCCACGCCTCCGGGACTCTTGATCCCCCTGAGGTTCGCAACTGGCGCATCCATCTTGTCGCCCTTGTCGCCTCCTGCTCTGCTCTCGCCATGGGTTACGATACGGCCGTCATCGGCGGCACCATGGCGCTTGACTCGTTCCGCCGCGACTTCGACCTCGCTGGCAAGTCCCAATCCCACCGTGATACTGTCCAAGGCAACATTGTCTCTACCTTCCAAGCCGGCTGCTTCTTCGGCGCCCTTCTCACGTTCCCGCTTGCCGAGAAATGGGGTCGTCGCAAGACCGTCATGCTCGCCGCTCTCGTCTTCCTCATCGGAGGTACTCTCATGACCGCCGCCCACGGCAAGCTCGAAATGATCATTGCAGGCCGCGCCGTCGCCGGCCTCGGCATTGGTGCTTCTTCTCTCGTCGTCCCCGTCTATATTGCCGAAACAGCACCGCCGTCTATTCGCGCCGAGCGTATCCTCTGCAGACTACGCGGCCTCGACCGCGACCACGAATACGTCCGCCGCGAGATGGGCGAGATCCGCCAGCAGGTTGAGGAGCGATCGACCATGCGCATGAGCAAGAAGCAGCAGTTCAAGAAGCTTTTCCAGAAGGGCACACGAAACCGCATGGGCATCGGCATGGCGCTCATGTTCCTCCAGAGTTTCACCGGCGTCAACATCATCACCTACTACGCACCCCGTATCTTCGAGACGCTTGGCGTGTCCGGTACTTCGCTGCGCCTGTTCTCGACCGGCTTCTACGGCATTGCCAAGACGCTCGGCATGATCTGCTTTACCTTCTACGTCGTCGAAAAGGTCGGTCGTCGCAAGGGCCTCATCTGGGGTGCCGCGCTCGGCTGCATTCCCATGTGGTACATTGGCGGCTACGTTATGAGGGCCGATCCCGCTGGCGCTGCTGCTGCCGGCGTCGTCAACCGCGATGCCTGGGGCTACCTCGCCATGGTCTGCGTCTATGTCAACGGCTTCATCATTTGTGCCACGTGGCAAGGCATCACCTGGACTTATTGTTCCGAGATCTTCCCCCTCGACATCCGTATGCTCTGCGTCGCCATCACCACCGCCGACACCTGGCTCGGTTCCTTCATCATTGCGCGCTCGACGCCCTACATGATTTCTGACCTCGGCTATGGTGCCTATTTCTTCTTCAGCGCCATTCTTGTCTGCATGGGTATTTGGGCCTTCATTTTCGTTCCTGAGACCAAGGGAATTACTCTCGAGGAGATGGATGCTCTCTTCATGAAGCCCATGCACAAGGCCGTCTGGGCCCAGCTGCGCGGCAAGGAGCTCGTGCCCGAGCGAACCGACTCCGTCTCCGACGAGAAGAAGTACATCGAGTCAGAGCAGTTCGAGAGGAAGGAGTAA > 1166 VDBG_03986 NA arabinose-proton_symporter XP_003006033.1 NA MPPPRADDEAPPTDLTNDHPRMEGTNTSRSSSNNEPMTDEKAMHQGGPGGPDRRRRSSVAALLQNPLAGLTQDQVLADVDNFTQSKGLTEYQEVFRKGALVAQVNNQDGAFERIEVLDEDEKNVLRRELTHRWSQPFMLYFLCTLCAGSAIVQGMDQSAVNGAQDFYFQELGLADMSAEIRGLVNGAPYLCSALIGCWTNPFLNHWFGRRGTIFISCGLSVITGFWQAAANNWYNLLIARFFLGFAVGAKSSTTPVYSAESTPKTIRGALTMMWQMWTAFGIALGTIVGVAFSGVTIFGEETQWRWIMASTSIPPLVVMVQVYLCPESPRWYMEKGRYPEAFKATCRLRYTKVQAARDMYYAYKLLEIESAEREGRSWKEFFTVRRNRRAAQSSWFVMFMQQFCGVNVIVYYSSASSPSSTYFYGYGANRRTVIMFQNADFTRNEALLVTMGTGLVNWLFAIPAIYTIDTFGRRNLLLVTFPLMSFFMFFTGFSFLITEQAARLACVTTGIYLFMAVYSPGAGPVPFTYSAEAFPLHIRDIGMCSATAVTWGFNFIISFSWLPMVEAYGDTGAFCWYGTWNLIGWVFAYFLLPETKNLTLEELDNVFNVTNREHAGYYLKKLPWYIKKHLLFQDVEPMPPLYAFDQSSPHDKKHDMAAAEASHSEGIVR Sordariomycetes Verticillium_albo-atrum_VaMs.102 Verticillium_albo-atrum_VaMs.102 XM_003005987 122..2131 Ma,L.-J.J.,_Klosterman,S.J.,_Subbarao,K.,_Dobinson,K.,_Veronese,P.,_Kang,S.,_Gold,S.E.,_Young,S.,_Jaffe,D.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Chen,Z.,_Alvarado,L.,_Kodira,C.D.,_Lander,E.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:2010 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315035). NA 11-AUG-2010 Verticillium_albo-atrum_VaMs.102_arabinose-proton_symporter,_mRNA. NA Plectosphaerellaceae_W.Gams,_Summerbell_&_Zare_2007 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Verticillium_albo_C9SF91_VERA1.gb Verticillium 302416402 Unpublished fungi XM_003005987 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 2010 NA mRNA NA VaMs.102 NA Verticillium_alboatrum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 526221 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Plectosphaerellaceae,_mitosporic_Plectosphaerellaceae,_Verticillium Annotation_of_Verticillium_albo-atrum_VaMs.102 NA XM_003005987.1 ATGCCTCCTCCACGTGCTGACGATGAGGCTCCGCCAACAGACCTCACCAACGACCACCCCCGCATGGAAGGCACCAATACCAGCCGCAGCAGCAGTAACAATGAGCCCATGACTGATGAGAAGGCCATGCATCAGGGCGGTCCTGGCGGTCCGGACCGGCGCCGCCGCAGCTCAGTCGCTGCACTGCTTCAGAACCCACTCGCAGGCTTGACCCAGGATCAGGTGCTCGCCGACGTCGACAACTTTACTCAGAGTAAGGGTCTGACGGAATACCAAGAAGTCTTCCGCAAGGGCGCTCTCGTTGCTCAGGTCAACAACCAGGATGGCGCTTTCGAGCGTATTGAAGTGCTCGACGAGGACGAGAAGAACGTCTTGCGTAGGGAGCTGACCCACCGCTGGAGCCAGCCCTTTATGCTGTACTTCCTCTGCACTCTCTGCGCCGGATCCGCCATTGTTCAGGGCATGGATCAGTCGGCCGTCAACGGCGCTCAAGACTTTTACTTCCAGGAGCTCGGCTTGGCAGACATGTCAGCAGAGATCCGGGGACTTGTCAACGGTGCCCCCTACCTCTGTTCTGCGCTCATCGGCTGCTGGACCAACCCTTTTCTCAATCACTGGTTCGGTCGTCGCGGCACCATTTTCATCAGCTGTGGCCTGTCCGTCATCACCGGCTTCTGGCAAGCTGCTGCCAACAACTGGTACAACCTTCTCATCGCCCGTTTCTTCCTTGGTTTCGCCGTCGGCGCCAAGTCTTCCACCACCCCCGTCTACTCGGCCGAGTCCACACCCAAGACCATTCGTGGTGCCCTCACCATGATGTGGCAGATGTGGACGGCGTTCGGCATCGCCCTTGGTACCATTGTTGGCGTCGCCTTCTCTGGAGTGACGATCTTCGGCGAGGAGACTCAATGGCGTTGGATCATGGCCTCCACCTCCATCCCTCCCCTCGTCGTCATGGTCCAAGTCTACCTGTGCCCCGAGTCTCCCCGCTGGTATATGGAGAAGGGACGTTATCCCGAGGCCTTCAAGGCAACCTGCCGTCTTCGATACACCAAGGTCCAGGCTGCCCGCGACATGTACTACGCCTACAAGCTGCTCGAGATTGAGAGCGCCGAGCGTGAGGGTCGAAGCTGGAAAGAATTCTTCACAGTGCGAAGAAATCGCCGTGCCGCACAGTCCTCGTGGTTTGTAATGTTCATGCAACAATTTTGTGGTGTCAATGTCATCGTCTATTACTCTAGTGCGTCTAGCCCTTCATCTACATATTTCTACGGGTATGGTGCTAACAGGAGAACAGTGATCATGTTCCAGAATGCCGACTTCACGCGGAACGAGGCTCTTCTCGTCACTATGGGCACCGGTCTTGTCAACTGGCTGTTTGCTATTCCGGCCATTTACACAATTGACACGTTTGGACGCCGCAACCTTCTGCTGGTCACCTTCCCGTTGATGTCGTTCTTCATGTTCTTCACAGGCTTCAGTTTCCTCATCACCGAACAAGCTGCGCGTCTGGCCTGCGTGACGACGGGTATCTATCTCTTCATGGCTGTGTACTCGCCCGGCGCCGGTCCGGTTCCGTTCACGTACTCGGCCGAGGCGTTCCCGCTCCACATTCGCGATATCGGCATGTGCAGTGCCACGGCCGTCACCTGGGGCTTCAACTTCATCATCTCCTTCTCGTGGCTTCCCATGGTCGAGGCGTACGGTGACACGGGCGCCTTCTGCTGGTACGGCACATGGAACCTCATCGGCTGGGTCTTTGCCTACTTCCTCTTGCCCGAGACGAAGAACCTCACTCTTGAAGAGCTCGACAACGTGTTCAATGTCACCAATCGGGAACATGCCGGGTACTACCTGAAGAAATTACCATGGTACATCAAGAAGCATCTGCTCTTCCAGGACGTCGAGCCCATGCCCCCGCTGTACGCGTTTGACCAATCATCGCCACACGACAAGAAGCACGACATGGCAGCCGCCGAAGCTTCGCACAGTGAAGGGATTGTGCGCTAA > 1167 VDBG_04981 NA proton_myo-inositol_cotransporter XP_003005375.1 NA MPRMSDDEGDIKPKLDASHVEFTEQDYARNINARIRNPLIGIAKQDLKVQTDDFCQTFGFNGKEDVFYRGALAAQNPETWEQFEEMTDDDRHFLRREITHKWHLPRQLYYAIAICSLGSAVQGWDNTGANGANLSFPVEFGIEHREMLVGAINAAPALAGLFSAWAADPVNNLLGRRGTIFATGLFAIFPVLAQGFAQNWWGLLICRLFMGIGMGIKISTIPIYSAEVAPAIIRGGIVTSFQLCVAFGIFVGFCSNLIWFRIGDLAWRFQLAAAFAPAIPVVIFVWWCPVPPLAHEEGSNAGCFKSFCRIRNTEMMAARDLYYAHCQVREERNAFGGKTLRTRVMELLTVPRLRRATVASAWIVIGQQFSGINIMAFYSATIFAEAGYSPKQCLLVSMGFGLITFVFAFPAVYMMDSFGRRNLLMITFPNMAWCLVAAGTCFLIDESVSARVPLIAFFVFLFSAMYGPGIGPLPSIYFSESFPLSHREIGGAVTIMVNNAFSSALTLSFPSLLKNFGPTGAFCFYAGLNILAFLVIFLIIPETKQRTLEELDYIFSVPTRRHAGYQVRTWLPWWVRRYIFFRRDAKLEPLYHLDARQE Sordariomycetes Verticillium_albo-atrum_VaMs.102 Verticillium_albo-atrum_VaMs.102 XM_003005329 NA Ma,L.-J.J.,_Klosterman,S.J.,_Subbarao,K.,_Dobinson,K.,_Veronese,P.,_Kang,S.,_Gold,S.E.,_Young,S.,_Jaffe,D.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Chen,Z.,_Alvarado,L.,_Kodira,C.D.,_Lander,E.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1797 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315034).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2010 Verticillium_albo-atrum_VaMs.102_proton_myo-inositol_cotransporter,_mRNA. NA Plectosphaerellaceae_W.Gams,_Summerbell_&_Zare_2007 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Verticillium_albo_C9SIU9_VERA1.gb Verticillium 302415085 Unpublished fungi XM_003005329 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 1797 NA mRNA NA VaMs.102 NA Verticillium_alboatrum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 526221 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Plectosphaerellaceae,_mitosporic_Plectosphaerellaceae,_Verticillium Annotation_of_Verticillium_albo-atrum_VaMs.102 NA XM_003005329.1 ATGCCTCGCATGTCTGATGACGAGGGCGACATCAAGCCCAAGCTCGATGCCTCTCACGTGGAGTTTACGGAGCAGGACTATGCTCGCAACATAAATGCCAGAATTCGCAACCCTTTGATCGGCATCGCGAAGCAAGACCTAAAAGTTCAGACTGACGACTTTTGTCAAACCTTTGGATTCAACGGCAAAGAGGACGTTTTCTATCGTGGTGCCCTCGCAGCCCAGAACCCAGAAACATGGGAGCAGTTTGAGGAGATGACCGACGACGACCGTCACTTTCTCCGTCGTGAGATTACCCACAAGTGGCATTTGCCCCGTCAACTCTACTACGCCATCGCGATCTGTTCTCTCGGCTCAGCCGTCCAAGGCTGGGACAATACGGGTGCGAATGGCGCAAACCTGTCTTTCCCCGTTGAGTTTGGAATCGAGCACAGGGAGATGCTTGTAGGTGCCATTAATGCGGCTCCTGCTCTCGCTGGTCTGTTCTCCGCCTGGGCGGCCGATCCCGTCAACAACCTGCTCGGACGTCGCGGAACCATCTTTGCCACCGGCCTGTTTGCTATCTTTCCGGTCCTGGCTCAAGGGTTCGCACAGAACTGGTGGGGTTTGCTGATCTGTCGACTCTTTATGGGAATTGGCATGGGCATCAAGATTTCGACGATCCCAATCTACTCGGCTGAGGTTGCGCCGGCCATTATTCGAGGTGGCATCGTCACGAGTTTTCAACTCTGTGTTGCATTTGGCATTTTCGTTGGCTTCTGTTCTAACCTGATCTGGTTCCGCATTGGTGATCTCGCCTGGCGGTTTCAGCTCGCTGCCGCATTTGCCCCTGCCATTCCTGTCGTCATCTTTGTTTGGTGGTGTCCGGTCCCCCCGCTGGCTCATGAAGAAGGATCGAATGCAGGATGCTTCAAATCGTTCTGTCGCATTCGCAACACTGAGATGATGGCTGCTCGTGACTTGTACTATGCCCACTGTCAAGTGCGCGAGGAGAGGAATGCCTTCGGGGGTAAGACGCTGCGCACACGAGTTATGGAGCTGCTCACAGTTCCTCGCCTGCGCCGAGCGACTGTTGCGAGCGCTTGGATCGTTATCGGCCAGCAATTTTCCGGCATCAACATCATGGCTTTCTACTCTGCCACAATCTTTGCCGAGGCTGGCTACTCCCCAAAGCAGTGCCTGCTTGTCTCGATGGGTTTTGGGCTCATTACGTTCGTCTTTGCGTTCCCGGCCGTGTACATGATGGACTCCTTTGGCCGCCGGAACCTGCTGATGATAACGTTTCCCAACATGGCCTGGTGTCTTGTTGCCGCCGGAACGTGCTTCCTCATTGACGAGAGCGTGTCTGCTCGAGTGCCCCTCATCGCATTTTTCGTGTTCCTTTTCTCCGCCATGTACGGCCCGGGAATTGGTCCGCTCCCTTCAATTTACTTCTCCGAATCTTTCCCCCTGTCGCATCGCGAGATTGGCGGCGCCGTGACTATCATGGTCAACAACGCGTTCAGCAGCGCTTTGACGCTTAGCTTCCCGTCTCTGCTCAAGAATTTCGGTCCGACGGGAGCTTTCTGCTTCTATGCAGGCCTGAACATCCTGGCGTTCCTCGTCATCTTCCTGATTATCCCCGAGACCAAACAGAGAACGCTTGAGGAGCTTGACTACATTTTCAGTGTTCCCACTCGACGCCATGCGGGGTACCAAGTGCGGACCTGGCTGCCTTGGTGGGTAAGGCGTTACATTTTCTTCCGCAGGGATGCCAAGCTCGAGCCCCTGTATCACCTCGATGCGCGTCAGGAGTGA > 1168 VDBG_05627 NA sugar_transporter_STL1 XP_003004514.1 NA MGIGDKFFGLRGKKLGWMIGFCAGMDFLLFGYDQGVMGGILTLRIFLDQFPEIDPDTATNAAESSTRATHQGISIASYNLGCFFGAILAIFIGNPLGRKRMIILGTAIMVVGAALQASAFGIAHLIVGRIITGLGNGINTSTVPTWQSETSSSHKRGKMVMFEGALITAGIMISYWIDLGFSFAAGSVAWRFPLAFQIFFCILILATVWKLPESPRWLMLKGREHDAREVISALADLPMDHQFVENEFTSIKETVAEMSKGSFKDLFSNDENRHLHRVVLAYVNQMFQQLGMSPFMSRLLAALNGTEYFLASLPPIWLVERVGRRKLMLFGAAGQAATMAILTGVNSQDGTAFKITGIVFLFIFNTFFAIGWLGMTWLYPAEIVPLRIRAPANGFSTSANWIWNFMVVMITPVSFNDIGHYTYLIFAVINAIIVPVVYFFYPEAAFRSLEEMDAIFQKAKGAAGWFSVVKIAHDEPRRYGKNGELLIDHDDAEEKGRHMHHSVDGSDSRSADGMFNRVDDERKRSEN Sordariomycetes Verticillium_albo-atrum_VaMs.102 Verticillium_albo-atrum_VaMs.102 XM_003004468 118..1701 Ma,L.-J.J.,_Klosterman,S.J.,_Subbarao,K.,_Dobinson,K.,_Veronese,P.,_Kang,S.,_Gold,S.E.,_Young,S.,_Jaffe,D.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Chen,Z.,_Alvarado,L.,_Kodira,C.D.,_Lander,E.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1584 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315033).COMPLETENESS:_incomplete_on_the_3_end. NA 11-AUG-2010 Verticillium_albo-atrum_VaMs.102_sugar_transporter_STL1,_mRNA. NA Plectosphaerellaceae_W.Gams,_Summerbell_&_Zare_2007 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Verticillium_albo_C9SLF0_VERA1.gb Verticillium 302413362 Unpublished fungi XM_003004468 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 1584 NA mRNA NA VaMs.102 NA Verticillium_alboatrum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 526221 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Plectosphaerellaceae,_mitosporic_Plectosphaerellaceae,_Verticillium Annotation_of_Verticillium_albo-atrum_VaMs.102 NA XM_003004468.1 ATGGGTATTGGGGACAAGTTCTTCGGCCTACGTGGCAAAAAGCTAGGATGGATGATCGGCTTCTGTGCTGGCATGGACTTTCTGCTGTTCGGTTATGATCAAGGTGTAATGGGTGGTATACTGACGCTGAGGATTTTCTTGGACCAGTTCCCTGAAATTGACCCGGATACTGCCACGAATGCCGCTGAGTCGAGTACTCGTGCCACACACCAAGGCATCTCGATCGCAAGCTACAACCTCGGTTGCTTCTTCGGCGCCATCCTTGCCATCTTCATCGGAAACCCCTTGGGTCGCAAGCGTATGATCATCCTCGGCACGGCCATCATGGTTGTCGGCGCCGCTCTGCAGGCTTCAGCCTTTGGCATTGCTCACCTGATTGTTGGTCGCATCATCACCGGTCTCGGCAACGGCATCAACACGTCGACGGTGCCCACGTGGCAATCAGAGACGTCAAGCTCCCACAAACGCGGGAAGATGGTCATGTTCGAGGGTGCTCTTATCACCGCTGGTATCATGATTAGTTACTGGATTGACCTTGGGTTCAGCTTCGCTGCTGGTAGTGTCGCCTGGCGTTTCCCTCTGGCCTTTCAGATCTTCTTCTGCATTCTCATTCTTGCCACTGTCTGGAAGCTTCCTGAGTCGCCCCGGTGGCTCATGCTCAAGGGCCGCGAGCATGATGCAAGGGAGGTGATCTCAGCGCTGGCTGATCTTCCCATGGATCACCAGTTTGTCGAGAACGAATTTACGTCCATTAAGGAGACTGTCGCCGAGATGTCCAAGGGTTCCTTCAAGGACTTGTTTTCCAACGACGAGAACCGCCATTTGCACCGTGTTGTTCTGGCCTACGTCAACCAGATGTTCCAGCAGCTCGGCATGTCGCCTTTCATGTCCCGCCTTCTAGCGGCTCTCAACGGAACTGAGTACTTCCTCGCCTCGCTGCCTCCAATCTGGCTCGTCGAGCGCGTCGGTCGCCGCAAGCTCATGCTTTTCGGCGCAGCAGGCCAGGCCGCGACCATGGCCATCCTGACGGGCGTCAACTCACAGGATGGCACCGCATTCAAAATTACCGGAATCGTGTTCCTCTTCATCTTCAACACCTTCTTCGCCATCGGCTGGCTCGGCATGACGTGGCTCTACCCGGCCGAGATTGTGCCGCTGCGCATCCGCGCGCCCGCCAACGGCTTCAGCACGTCGGCCAACTGGATCTGGAACTTCATGGTCGTCATGATCACGCCTGTCAGCTTCAACGACATTGGACACTACACGTACCTCATTTTCGCCGTCATCAACGCCATCATCGTGCCCGTCGTCTACTTCTTCTACCCGGAAGCGGCCTTCCGCTCGCTCGAGGAGATGGACGCCATCTTCCAAAAGGCCAAGGGCGCCGCCGGCTGGTTCTCCGTCGTCAAGATTGCGCACGACGAGCCGAGGCGCTATGGCAAGAACGGCGAGCTTCTGATCGATCACGACGACGCTGAGGAGAAGGGCCGCCACATGCACCACTCGGTCGACGGCAGCGATTCGCGGTCCGCCGACGGCATGTTCAACCGCGTGGACGACGAGCGCAAGCGCAGCGAGAACTAG > 1169 VDBG_06062 NA inorganic_phosphate_transporter_PHO84 XP_003003620.1 NA MAELLRHHEHHDPRIGEIPVPHGPETGDEHDDFPREHTTEHERRIFAHITRPDDSYTPEGVYWADLPLRQRITFVTKVDREEAARELKATGQMMKKDPLSPMGWYFRNAILPGAGLGLEGYVLFSIGNLEPLFHAVWPECWGCPVPTRQVGPREAACRRFPSPATTSTPLRACCSNFGGRLLATAGTWFCNDVFFYGNKLFQGQFISVISSNPNSLMEKWTWNLINVVVSLAGYYLASLLIDNKLYGRKTMQQVGFFMCFVMFVIPAFNYDYYTSPAGIHAFQAMYFLSSFFNQFGPNSVTFLVAGEVFPTPVRASAHGFSACIGKAGALLASVLYNYIDTPTKFHVVPWFGLAGMLLTWGFLPDTTGLDLREQERRWMYIIQGREKEYHGVAVHPVHLSAWERMRGAGKEYNPDLDLKSQIRDLRTEWEEEQRGGNGEKSGGEEEAAGEGDWSPEIHGYFRQGQGKGKAVEGEEGRGVAETPGSPELQEKSAAA Sordariomycetes Verticillium_albo-atrum_VaMs.102 Verticillium_albo-atrum_VaMs.102 XM_003003574 NA Ma,L.-J.J.,_Klosterman,S.J.,_Subbarao,K.,_Dobinson,K.,_Veronese,P.,_Kang,S.,_Gold,S.E.,_Young,S.,_Jaffe,D.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Chen,Z.,_Alvarado,L.,_Kodira,C.D.,_Lander,E.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1488 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315032).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2010 Verticillium_albo-atrum_VaMs.102_inorganic_phosphate_transporter_PHO84,_mRNA. NA Plectosphaerellaceae_W.Gams,_Summerbell_&_Zare_2007 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Verticillium_albo_C9SMD8_VERA1.gb Verticillium 302411573 Unpublished fungi XM_003003574 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 1488 NA mRNA NA VaMs.102 NA Verticillium_alboatrum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 526221 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Plectosphaerellaceae,_mitosporic_Plectosphaerellaceae,_Verticillium Annotation_of_Verticillium_albo-atrum_VaMs.102 NA XM_003003574.1 ATGGCTGAACTCCTCCGCCACCACGAACACCACGATCCTCGTATCGGCGAGATCCCCGTCCCCCACGGCCCTGAGACGGGTGACGAACACGATGACTTCCCTCGCGAGCACACCACCGAACACGAGCGCCGCATCTTCGCCCACATCACCCGCCCAGATGACTCGTACACGCCCGAGGGCGTCTACTGGGCCGATTTGCCCCTCCGTCAGCGCATCACTTTCGTGACCAAGGTCGATCGCGAGGAGGCCGCCCGCGAGCTCAAAGCCACCGGCCAAATGATGAAGAAAGATCCCCTCTCGCCCATGGGCTGGTACTTCCGGAATGCCATCCTGCCCGGCGCCGGTCTCGGTCTTGAGGGTTACGTCCTGTTCTCCATTGGAAACTTGGAGCCGCTCTTCCACGCCGTGTGGCCCGAGTGCTGGGGATGCCCCGTGCCAACCCGCCAGGTTGGCCCTCGCGAAGCAGCGTGCCGGCGTTTTCCGTCACCGGCTACGACGTCAACCCCGCTGCGCGCCTGTTGCAGCAACTTTGGCGGCCGCCTTCTCGCTACCGCCGGTACCTGGTTCTGCAACGATGTCTTCTTCTACGGCAACAAGCTCTTCCAGGGCCAGTTCATCTCGGTCATCTCCTCCAACCCCAACAGTCTGATGGAGAAGTGGACTTGGAACCTCATCAATGTTGTCGTTTCCCTAGCGGGATACTACCTCGCCAGTCTCCTCATCGACAACAAGCTTTACGGCCGCAAGACGATGCAGCAAGTCGGCTTCTTCATGTGCTTCGTCATGTTCGTTATCCCTGCGTTCAACTACGACTACTACACCTCCCCCGCCGGCATTCACGCCTTCCAGGCCATGTACTTCCTCTCCTCCTTCTTCAACCAGTTCGGCCCCAACAGCGTCACATTCCTTGTGGCCGGCGAAGTGTTCCCCACGCCCGTCCGCGCTTCGGCCCACGGCTTCTCCGCCTGCATCGGCAAGGCCGGTGCTCTCCTCGCAAGTGTCCTGTACAATTACATCGACACGCCGACCAAGTTCCACGTTGTGCCCTGGTTCGGCCTCGCCGGCATGCTGCTTACCTGGGGCTTCCTGCCCGACACGACGGGCCTCGACCTGCGCGAGCAGGAGAGGCGGTGGATGTACATTATCCAGGGTCGCGAGAAGGAATACCACGGCGTCGCCGTGCACCCTGTGCATCTCTCTGCTTGGGAGAGAATGCGCGGCGCCGGCAAGGAATACAACCCCGACCTGGACCTCAAGTCGCAGATCCGTGATCTGAGGACCGAGTGGGAAGAGGAGCAGCGCGGCGGCAACGGCGAGAAGTCTGGAGGTGAAGAGGAGGCTGCCGGTGAAGGTGATTGGTCGCCTGAGATTCACGGGTACTTCCGTCAGGGACAGGGAAAGGGAAAGGCCGTAGAGGGTGAGGAAGGACGTGGCGTTGCTGAGACTCCCGGGAGTCCAGAGCTCCAGGAGAAGTCTGCTGCAGCTTGA > 1170 VDBG_06078 NA maltose_permease_MAL31 XP_003003636.1 NA MDNVQIDDATLSEPTVLAARAQEAVEAQHAITLKEALRAYPMAIFWSLMVCMCVIMEGNFYAYPQFAKKYGQYIDDNGKHQLSAPWQAGLSNASGVGCFIGVLLNGYLVAKFGQKRILIISLFVLSAFIFMTFFAHSIVILMIGQFFCGLPWGVFATSAPAYASEVLPMSLRVYLTSWTNMCFIIGQLIAAGVLAGLVDRPDEWAYRIPFALQWTWPAFLIPILSFAPESPWHLVRMGRLEDAEKSLCRLQRDDVTDGSSKFSVKATLAEIVHTNNVEIELTAGTSYWDCFRGTELRRTEIACVAFAGQVLAGSSFAYNSTYFFQQVGLDTDQTYYLNTGGTAMALVGTLVNWFCLMPYFGRRRIYLCGMATMATVLYIIGILNVWTDRNSVGMVQAVLTLVWTFVFQLSAGQLGWAIPAEIGSTRLRQKTICLARNSYYVISVISQVLQPYFMNPGELNLRGYTGFIWGSTAFAVFVWAFFRLPESKGRTYEELDYLFAHLTPTRKFGSAKAEIFGAEGTEGKMMAE Sordariomycetes Verticillium_albo-atrum_VaMs.102 Verticillium_albo-atrum_VaMs.102 XM_003003590 NA Ma,L.-J.J.,_Klosterman,S.J.,_Subbarao,K.,_Dobinson,K.,_Veronese,P.,_Kang,S.,_Gold,S.E.,_Young,S.,_Jaffe,D.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Chen,Z.,_Alvarado,L.,_Kodira,C.D.,_Lander,E.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1587 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315032).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2010 Verticillium_albo-atrum_VaMs.102_maltose_permease_MAL31,_mRNA. NA Plectosphaerellaceae_W.Gams,_Summerbell_&_Zare_2007 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Verticillium_albo_C9SMF4_VERA1.gb Verticillium 302411605 Unpublished fungi XM_003003590 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 1587 NA mRNA NA VaMs.102 NA Verticillium_alboatrum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 526221 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Plectosphaerellaceae,_mitosporic_Plectosphaerellaceae,_Verticillium Annotation_of_Verticillium_albo-atrum_VaMs.102 NA XM_003003590.1 ATGGACAATGTCCAGATCGATGATGCTACCCTCAGCGAGCCCACCGTACTGGCGGCCCGGGCCCAAGAGGCTGTTGAAGCGCAGCATGCCATTACCCTGAAGGAGGCTCTGCGTGCCTATCCCATGGCTATCTTCTGGAGTTTGATGGTGTGCATGTGTGTCATTATGGAAGGCAACTTTTACGCCTACCCCCAATTTGCCAAGAAGTACGGCCAGTATATCGATGATAACGGCAAGCATCAACTGTCAGCTCCGTGGCAAGCTGGTCTCAGTAACGCCAGCGGTGTCGGCTGCTTCATTGGCGTCCTTCTCAACGGCTACCTCGTCGCCAAATTTGGTCAGAAGAGGATCCTCATCATCTCGCTGTTTGTGCTGTCGGCCTTTATCTTTATGACCTTCTTCGCCCACAGCATCGTCATCCTCATGATCGGTCAGTTCTTCTGCGGCCTCCCCTGGGGCGTCTTCGCCACGTCGGCGCCGGCCTACGCCTCCGAGGTTCTGCCCATGAGCCTCCGCGTCTATCTCACGAGCTGGACCAACATGTGCTTCATTATCGGCCAGCTTATTGCTGCGGGTGTGCTCGCAGGCCTCGTCGACCGGCCCGACGAGTGGGCGTACCGTATTCCCTTTGCTCTGCAGTGGACGTGGCCCGCCTTCCTGATCCCCATCCTCAGCTTTGCGCCCGAGTCGCCCTGGCACCTGGTTCGCATGGGTCGCCTCGAGGATGCCGAGAAGTCACTGTGCCGCCTGCAGCGCGACGACGTGACGGACGGGTCGTCCAAGTTCAGCGTCAAGGCGACACTGGCCGAGATTGTGCATACCAACAATGTCGAGATCGAGCTCACAGCTGGCACAAGCTACTGGGACTGCTTCCGAGGTACCGAACTCCGCCGCACGGAGATTGCGTGCGTGGCCTTTGCCGGACAGGTGCTCGCCGGCTCTTCATTCGCCTACAACTCGACCTACTTCTTTCAGCAGGTCGGACTCGACACGGACCAAACGTATTACCTCAACACGGGCGGCACAGCCATGGCGCTCGTCGGTACGCTAGTCAATTGGTTCTGTCTCATGCCCTATTTTGGACGCCGGCGCATCTACCTCTGCGGCATGGCCACCATGGCAACAGTGTTGTACATTATTGGCATCCTCAATGTCTGGACGGATCGCAACTCGGTGGGCATGGTGCAGGCAGTCTTGACGCTCGTGTGGACCTTTGTCTTCCAGCTGTCAGCGGGCCAACTGGGCTGGGCCATTCCGGCCGAGATTGGCTCGACGCGACTGAGGCAGAAGACGATCTGCCTGGCGCGTAACTCGTACTATGTCATTTCGGTCATCTCGCAGGTCTTGCAGCCGTACTTCATGAACCCGGGCGAGCTGAACCTGCGTGGATACACGGGATTCATCTGGGGGAGCACCGCGTTCGCTGTGTTTGTGTGGGCGTTCTTCCGTCTTCCCGAGTCTAAGGGCCGCACATACGAGGAGCTGGACTACCTGTTCGCCCATCTCACGCCGACCAGGAAGTTTGGCTCGGCCAAGGCTGAGATTTTTGGAGCCGAGGGTACGGAGGGTAAGATGATGGCTGAGTAG > 1171 VDBG_08892 NA sugar_transporter XP_003001096.1 NA MATGKTTATGLEGQLSDNIVVERREVAEQGKLDAKEASMEAAAKGQGISGFETLGLWETVKAFKVCTATCFLVAFSAATDGYQIGMNGNIVANPGFVRQFATETNDAGEPFLASPILSAWGSIMSVGQIIGMTSLPFLSERFGRKAAMYAFWFVLAMSVLAESLARSWPVWLVAKLLSRHLVSAVCRAPSRLTLPRQPPFWFGLGNFFAPVALQVHSKVDADDWLTPVYTQWAQIGLMLIIFLCVPETPAWCVTRGYESRAKASLRRLHWEIKDYDLEYQYQLLVMAVDHEMEVARASRNEKWWSIFRGTDGRRTLTALWTLMTQQFIGLTLFSTFASYFFQQAGVEDPFQATCITSGINIAANLIFILMADKFGRRNISCGGSTLCWAACTAIGILGVVPRVKATEYLLVLFACLWNIGMTANGATGWGFIGEISSQRLRPYTAGFGAASTCVAGVVMNVLTPYMVNDNEWGWELKTGWFYAGLGAPFVVIMWFLIPETKGRSAAELDELFERKIKHWRFHKTQTATQTALLSRHE Sordariomycetes Verticillium_albo-atrum_VaMs.102 Verticillium_albo-atrum_VaMs.102 XM_003001050 NA Ma,L.-J.J.,_Klosterman,S.J.,_Subbarao,K.,_Dobinson,K.,_Veronese,P.,_Kang,S.,_Gold,S.E.,_Young,S.,_Jaffe,D.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Chen,Z.,_Alvarado,L.,_Kodira,C.D.,_Lander,E.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1614 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315026).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2010 Verticillium_albo-atrum_VaMs.102_sugar_transporter,_mRNA. NA Plectosphaerellaceae_W.Gams,_Summerbell_&_Zare_2007 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Verticillium_albo_C9SVG7_VERA1.gb Verticillium 302406519 Unpublished fungi XM_003001050 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 1614 NA mRNA NA VaMs.102 NA Verticillium_alboatrum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 526221 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Plectosphaerellaceae,_mitosporic_Plectosphaerellaceae,_Verticillium Annotation_of_Verticillium_albo-atrum_VaMs.102 NA XM_003001050.1 ATGGCTACGGGAAAAACAACAGCTACGGGCCTCGAGGGGCAACTCTCCGACAACATCGTCGTTGAACGCCGTGAGGTCGCAGAACAGGGCAAGCTCGATGCCAAGGAGGCTTCCATGGAGGCCGCGGCCAAGGGCCAGGGCATCTCTGGCTTCGAAACGCTCGGCCTGTGGGAGACCGTCAAGGCGTTCAAGGTTTGCACTGCGACGTGCTTCCTCGTCGCCTTCAGTGCGGCCACGGACGGCTACCAGATCGGCATGAATGGAAATATCGTCGCCAACCCGGGTTTTGTCAGGCAATTCGCGACAGAGACCAACGATGCGGGCGAGCCGTTCCTCGCGTCGCCCATCTTGAGTGCGTGGGGATCCATCATGTCAGTCGGCCAGATTATTGGCATGACCTCCCTGCCATTCCTTTCTGAACGTTTCGGCCGCAAGGCCGCCATGTACGCATTCTGGTTCGTGCTCGCCATGAGCGTGCTCGCTGAATCGCTTGCCCGCTCGTGGCCCGTCTGGCTCGTGGCCAAGCTCCTTTCCCGGCATTTGGTGTCGGCTGTCTGCAGAGCACCATCCCGACTTACATTGCCGAGACAGCCCCCCTTTTGGTTCGGCCTTGGCAACTTCTTCGCCCCCGTGGCGCTGCAGGTGCACTCCAAGGTCGATGCCGACGACTGGCTGACGCCCGTGTACACGCAGTGGGCGCAGATTGGGCTCATGCTCATCATCTTCCTGTGCGTGCCCGAGACGCCAGCGTGGTGCGTCACCCGAGGCTACGAGTCGCGAGCGAAAGCCTCATTGCGCCGGCTGCACTGGGAAATCAAGGACTACGACCTTGAGTACCAGTATCAGTTGCTCGTCATGGCTGTGGACCACGAGATGGAGGTGGCGCGGGCTTCTCGGAACGAGAAGTGGTGGTCCATTTTCAGGGGCACCGATGGGAGACGCACCCTCACGGCGCTGTGGACGCTCATGACGCAGCAATTCATCGGCTTGACCCTCTTCTCGACCTTCGCATCGTATTTCTTCCAGCAGGCCGGTGTGGAGGATCCGTTCCAGGCGACCTGCATCACGTCCGGTATCAACATTGCCGCCAACTTGATCTTCATCTTGATGGCTGACAAATTCGGTCGGAGGAATATCTCATGCGGCGGTTCAACGCTGTGCTGGGCGGCATGCACAGCCATAGGCATTCTGGGCGTGGTTCCGCGGGTGAAGGCGACCGAATACCTGCTTGTCCTCTTCGCCTGTCTTTGGAATATTGGCATGACAGCCAACGGTGCGACAGGCTGGGGCTTTATCGGCGAGATCTCCTCTCAACGTCTTCGCCCCTACACCGCAGGCTTCGGCGCGGCGTCAACATGTGTCGCGGGCGTCGTGATGAATGTGCTGACGCCCTACATGGTCAATGACAACGAGTGGGGCTGGGAGCTTAAGACGGGCTGGTTCTATGCTGGCCTGGGCGCGCCGTTTGTTGTGATCATGTGGTTCCTGATCCCCGAGACCAAAGGACGGTCGGCTGCTGAACTGGACGAACTTTTTGAACGCAAAATCAAGCACTGGCGATTTCACAAGACCCAGACTGCGACGCAGACGGCGCTGCTCTCACGCCACGAGTAG > 1172 VDBG_09566 NA alpha-glucosides_permease_MPH2/3 XP_003000371.1 NA MSNPVDTKPPSGDPEVEGHKATVEHAYDIDEKARAADYRADAIEAENTEHKMGVLEAAKAYPMASLWAFTMSCTIIMESYCVFLMGNFIALPAFAAQFGVLNEATGKMVIETKWQSALQVGGPLGAIIGVCLAGPLTSRIGYRWATISGLMALNAFIFVFYFANSLPVILASQLLEGIPWGIFIANAPAYCSEIVPMRLRAPATQMLQMFWAIGAIIVGAVTYRYNTLDSETAFRVPIALQWMFPTPLAILIWIAPESPWWLVRRGRLEDAERSVQRLGRTSVAVNLKESVAMMRRTIELEKTEKEPNHLELFKGTDCYRTLIVCCVYAAQNLTGNLIANQAVYFFEQAGMSTDTAFAMGLITSALQTVMVMLSWILTTYLGRRTIYLWGSAFNVVLLVALGVAASFGKSTAASLAQASLGLIVSVLFTLGPAPASWVIIGETSAIRLRPLTTGIGRGCYYVINIPCIFLASYMLNPKSGNLGGKCGYVWGGTGLFCLIMAYFYLPEMKGRSYREIDILFKRRVPARKWTKTAVDINDDQ Sordariomycetes Verticillium_albo-atrum_VaMs.102 Verticillium_albo-atrum_VaMs.102 XM_003000325 NA Ma,L.-J.J.,_Klosterman,S.J.,_Subbarao,K.,_Dobinson,K.,_Veronese,P.,_Kang,S.,_Gold,S.E.,_Young,S.,_Jaffe,D.,_Gnerre,S.,_Berlin,A.,_Heiman,D.,_Hepburn,T.,_Sykes,S.,_Chen,Z.,_Alvarado,L.,_Kodira,C.D.,_Lander,E.,_Galagan,J.,_Nusbaum,C._and_Birren,B. NA 0:1623 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NW_003315024).COMPLETENESS:_incomplete_on_both_ends. NA 11-AUG-2010 Verticillium_albo-atrum_VaMs.102_alpha-glucosides_permease_MPH2/3,_mRNA. NA Plectosphaerellaceae_W.Gams,_Summerbell_&_Zare_2007 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Verticillium_albo_C9SWR5_VERA1.gb Verticillium 302405067 Unpublished fungi XM_003000325 NA NA Glomerellales_Chadef._ex_Reblova,_W._Gams_&_Seifert_2011 sac_fungi NA 1623 NA mRNA NA VaMs.102 NA Verticillium_alboatrum NA forward Hypocreomycetidae NA NA Dikarya NA Pezizomycotina NA NA NA NA eukaryotes NA 526221 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Pezizomycotina,_Sordariomycetes,_Hypocreomycetidae,_Glomerellales,_Plectosphaerellaceae,_mitosporic_Plectosphaerellaceae,_Verticillium Annotation_of_Verticillium_albo-atrum_VaMs.102 NA XM_003000325.1 ATGAGCAATCCCGTTGATACCAAGCCGCCCAGCGGCGATCCCGAGGTGGAGGGACACAAAGCTACCGTCGAGCATGCCTACGACATCGACGAAAAGGCTCGAGCCGCCGACTACAGGGCTGACGCCATTGAAGCAGAGAACACGGAGCACAAAATGGGCGTGCTCGAAGCTGCGAAGGCTTACCCCATGGCTTCTCTTTGGGCCTTCACAATGTCTTGCACTATCATCATGGAGTCTTACTGCGTCTTCCTGATGGGCAACTTCATTGCGCTGCCTGCCTTCGCCGCTCAATTTGGCGTTCTAAACGAAGCGACTGGTAAGATGGTCATCGAAACCAAGTGGCAGTCTGCCCTTCAGGTTGGCGGTCCCCTTGGTGCTATCATCGGTGTGTGCCTTGCCGGCCCCCTGACGAGCCGTATTGGATACCGCTGGGCGACTATTTCTGGGCTTATGGCCCTCAACGCCTTCATCTTCGTCTTCTATTTCGCAAACTCGCTGCCCGTTATTCTGGCCTCTCAGCTACTAGAGGGTATACCATGGGGTATCTTTATTGCAAATGCCCCCGCCTATTGCAGTGAGATCGTGCCTATGAGGCTGAGAGCCCCAGCCACTCAGATGCTGCAGATGTTCTGGGCTATTGGTGCCATTATCGTCGGTGCTGTTACTTATCGTTATAACACGCTTGACAGCGAGACAGCCTTCAGGGTCCCTATTGCGCTACAGTGGATGTTCCCTACGCCTCTCGCCATTCTCATCTGGATTGCCCCCGAATCCCCTTGGTGGCTCGTCCGTAGGGGCCGTCTCGAAGATGCTGAGCGTTCTGTTCAACGCCTGGGACGTACGTCTGTGGCCGTTAACCTGAAAGAGTCGGTGGCTATGATGCGTCGTACCATCGAGCTCGAGAAGACTGAAAAGGAGCCCAACCACCTCGAGCTGTTCAAGGGTACTGATTGTTACCGTACTCTGATTGTCTGCTGTGTGTATGCGGCGCAGAACCTGACTGGTAACCTCATCGCGAACCAAGCCGTCTATTTCTTCGAACAGGCTGGCATGAGCACCGACACCGCTTTTGCGATGGGCCTTATCACCTCGGCCTTGCAAACCGTCATGGTCATGCTCTCCTGGATTCTTACTACTTATCTCGGCCGCCGCACGATCTACCTCTGGGGTTCCGCATTCAATGTCGTTTTACTCGTCGCCCTCGGCGTTGCCGCCTCCTTCGGCAAGTCGACTGCCGCCTCTTTGGCGCAGGCGTCGCTTGGCCTCATTGTATCTGTTCTCTTCACGCTCGGCCCAGCGCCCGCGTCATGGGTCATTATTGGCGAGACGTCGGCGATTCGCTTGAGGCCCCTGACTACAGGTATCGGCCGCGGTTGCTACTATGTTATCAACATCCCGTGCATTTTTCTTGCAAGCTACATGCTTAATCCCAAATCTGGTAACCTTGGCGGCAAGTGCGGGTATGTTTGGGGCGGCACAGGTCTGTTTTGCTTGATTATGGCATATTTCTATTTGCCGGAGATGAAGGGGCGCTCATACCGCGAGATCGACATTCTATTTAAGCGTCGCGTTCCGGCACGTAAGTGGACAAAGACGGCGGTTGACATCAACGACGACCAGTAG > 1173 VFA_003628 NA putative_drug_transport_transmembrane_protein EEX41085.1 11 MTGNILLISVIGLIGKVIAPSSSMITLPVALQFLGLMSATIPASLIMGKLGRRLGFSIGNSVGIVGASLATYALYQQAFWLFCVATFLLGIGIGFGTLYRFAAIEVCDAHLRHRAISVSMAGGVLAAVLGPNLAILSQRWSDGGLYIGAFAALIGLNLLALILLQTIQFPKPIHHESQPSTDKLSVIAKGPNFKASVFAAMVSYAVMNILMTATPLAMIGCGFDFTKAAGVIEWHVLGMFVPAFFTGRLIEKFGPQRMILAGGLLFILCITINIHGQSIWHFRAALVLLGVGWNFMFIAATGLFSQSYQEHNKPKAQAFNEFSVFSCVTLTALLSGWLESTVGWQSLNLYVLPFVLVVIGIFVLHAKNSRLAVN gamma_subgroup Vibrio_furnissii_CIP_102972 Vibrio_furnissii_CIP_102972 ACZP01000014 1636476..1637600 Saunders,E.H.,_Munk,A.C.,_Tapia,R.,_Green,L.,_Rogers,Y.,_Detter,J.C.,_Bruce,D.,_Brettin,T.S.,_Colwell,R.R.,_Huq,A.,_Grim,C.J.,_Hasan,N.A.,_Bartels,D._and_Vonstein,V. NA 0:1125 DNA_Source:_Rita_Colwell_(http://www.cbcb.umd.edu)_and_ChristopherGrimVibrio_furnissii,_formerly_Vibrio_fluvialis_biovar_II,_isoccassionally_isolated_from_diarrheal_cases,_but_it_has_not_beenconfirmed_as_the_causative_agent_in_most_cases._Vibrio_furnissiiCIP_102972_is_the_type_strain_of_the_species.The_NIAID_funded_Bioinformatics_Resource_Center_PathoSystemsResource_Integration_Center_(http://patricbrc.vbi.vt.edu/)_isresponsible_for_genome_annotation_updates_of_this_record.Genome_Coverage:_8xSequencing_Technology:_Sanger;_454. NA 06-OCT-2009 Vibrio_furnissii_CIP_102972_VFA.Contig91,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Vibrio_furnissii_C9PHW1_VIBFU.gb Vibrio_Pacini_1854 260614437 Submitted_(02-OCT-2009)_Argonne_National_Laboratory,_9700_S._Cass_Ave.,_Argonne,_IL_60527,_USA NA ACZP01000014 NA NA Vibrionales purple_photosynthetic_bacteria_and_relatives NA 1125 NA genomic_DNA NA CIP_102972 NA Vibrio_furnissii_Brenner_et_al._1984 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 675811 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Vibrionales,_Vibrionaceae,_Vibrio Direct_Submission NA ACZP01000014.1 TTAATTGACAGCGAGGCGACTGTTCTTTGCATGCAGCACAAAAATGCCAATCACGACCAGCACAAACGGTAACACATAAAGATTGAGCGACTGCCAACCGACCGTCGATTCGAGCCAGCCCGACAGCAGCGCAGTCAACGTCACGCAACTGAATACGGAAAACTCATTGAAGGCCTGCGCTTTGGGTTTGTTATGCTCTTGATAAGATTGACTGAACAATCCGGTTGCCGCGATGAACATGAAATTCCATCCCACACCGAGCAGCACCAACGCCGCGCGAAAATGCCAAATCGACTGACCATGAATGTTGATGGTGATGCACAGAATAAACAGTAGTCCACCGGCCAGGATCATGCGCTGCGGCCCGAACTTTTCAATCAAACGACCGGTGAAAAATGCCGGTACGAACATGCCGAGCACATGCCACTCAATCACGCCGGCCGCTTTGGTGAAATCAAACCCGCAACCAATCATCGCCAGCGGCGTCGCGGTCATCAGAATATTCATCACCGCATACGACACCATCGCCGCAAAAACAGACGCTTTAAAGTTTGGGCCTTTAGCGATCACCGACAGTTTATCTGTCGAAGGTTGCGATTCATGATGGATGGGCTTAGGAAACTGAATGGTTTGCAGCAGTATCAACGCCAACAGGTTCAAACCAATCAACGCGGCAAATGCACCGATGTACAACCCACCGTCGCTCCAGCGTTGTGACAAAATCGCCAAGTTCGGCCCAAGCACGGCGGCCAATACGCCACCGGCCATGGACACCGAAATGGCGCGATGGCGAAGATGCGCATCGCAAACTTCAATGGCCGCAAAGCGATACAGCGTGCCGAAACCAATGCCGATCCCCAGCAGAAATGTCGCGACACAAAACAGCCAAAACGCTTGTTGATAGAGCGCGTAAGTCGCCAATGACGCCCCAACAATACCCACGCTGTTGCCAATGCTAAAACCCAATCGGCGGCCCAATTTCCCCATGATCAATGACGCCGGAATGGTCGCCGACATTAAGCCGAGAAATTGCAGCGCAACGGGCAACGTGATCATACTGCTGCTTGGCGCAATCACTTTCCCAATCAAACCAATCACTGAAATGAGCAGGATATTGCCTGTCAT > 1174 VME_19240 identified_by_sequence_similarity;_putative conserved_hypothetical_protein EEZ88214.1 11 MEATSKAEARKHNLAYIVRICCIAALGGILLGYDTAVISGAIGPIREYFGLSPAQTGWAVSSVVLGSIIGAVSAGWAALKYGRRNTLFIAAILFIISAIGSALATDFTFYTVLRIVGGVAVGLACVVSPMYMSEVAPKDYRGRAVSMFQQSAVIGQTGVFYVNYLIAKGMSEAWLVDMGWRWMLGSEVIPAALFAMLLFLIPESPRWLVLKGKVAEAKATLSRISNPKHADRLIKEIQESLVESHGAKKNKVSLRSPLLFAILVIGTFVAAAQQLTGINVIMYYTPEILKPITGSTENALFQTTFVGIVFIGGNALGMYLIDKVGRLPLMKYGTIGCAFGMFIVGYVLYQQTEGYAALFALCLYVVSYATSWGCACWTMISEIFPNSIRSRAMAIAVGAQWFTGFIVTQSFPMLNENAYLQENFNGAFAFWLFGVLSLICMFVVVKYVPETKGVSLEKMEEAMAKKLGKKVSGTATEARA gamma_subgroup Vibrio_harveyi_1DA3 Vibrio_harveyi_1DA3 ACZC01000017 117143..118585 Thompson,C.C.,_Vicente,A.C.,_Souza,R.C.,_Vasconcelos,A.T.,_Vesth,T.,_Alves,N._Jr.,_Ussery,D.W.,_Iida,T._and_Thompson,F.L. NA 0:1443 Genome_Coverage:_22xSequencing_Technology:_454. NA 23-NOV-2009 Vibrio_harveyi_1DA3_Cont17,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Vibrio_harveyi_D0XA11_VIBHA.gb Vibrio_Pacini_1854 269834042 BMC_Evol._Biol._9,_258_(2009) NA ACZC01000017 NA NA Vibrionales purple_photosynthetic_bacteria_and_relatives 19860885 1443 NA genomic_DNA NA 1DA3 NA Vibrio_trachuri_Iwamoto_et_al._1996 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 673519 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Vibrionales,_Vibrionaceae,_Vibrio Genomic_taxonomy_of_vibrios NA ACZC01000017.1 TTATGCACGTGCTTCAGTCGCAGTTCCAGATACTTTTTTGCCCAGTTTTTTCGCCATTGCTTCTTCCATTTTCTCCAAGCTGACGCCTTTGGTTTCAGGCACATACTTGACGACCACGAACATACAAATGAGCGACAACACACCGAATAACCAGAAGGCAAAGGCACCGTTGAAGTTCTCTTGTAGGTAGGCGTTTTCATTGAGCATTGGGAAAGACTGCGTCACGATAAAGCCAGTAAACCATTGTGCACCGACCGCGATAGCCATGGCACGAGAGCGGATACTGTTCGGGAAGATTTCTGAAATCATCGTCCAACATGCACAGCCCCAAGAGGTCGCGTAAGACACCACGTAAAGACACAGTGCGAATAGCGCCGCGTAACCTTCCGTTTGCTGGTAAAGCACGTAACCAACGATGAACATACCGAATGCACAGCCAATGGTGCCGTATTTCATCAGTGGCAAGCGGCCGACTTTATCGATCAGGTACATACCCAAGGCGTTACCACCGATAAATACGATACCCACGAACGTCGTTTGGAATAGCGCGTTTTCAGTAGAGCCTGTGATTGGTTTTAAGATCTCCGGAGTGTAGTACATGATCACGTTGATACCGGTTAGCTGCTGAGCTGCCGCGACAAACGTACCGATAACCAAAATTGCGAACAGCAATGGCGAGCGCAGGCTGACTTTGTTCTTCTTCGCACCATGGCTTTCCACTAACGACTCCTGGATCTCTTTGATCAAACGATCCGCGTGTTTCGGGTTAGAAATTCGAGAGAGTGTCGCTTTTGCTTCGGCGACTTTGCCTTTTAATACTAACCAACGTGGTGATTCTGGGATGAGGAACAACAACATTGCGAAAAGCGCGGCAGGAATCACTTCTGAGCCGAGCATCCAACGCCAGCCCATGTCTACTAGCCAAGCTTCTGACATGCCTTTTGCGATGAGGTAGTTAACGTAGAACACACCAGTCTGGCCAATAACTGCCGATTGCTGGAACATGCTCACTGCGCGACCTCGATAATCTTTTGGCGCCACTTCTGACATGTACATTGGCGATACTACACAAGCAAGGCCAACGGCGACCCCGCCGACGATGCGTAGAACAGTGTAGAAGGTGAAGTCGGTTGCGAGGGCGGAGCCGATAGCGGAAATAATGAAGAGGATGGCGGCGATAAAGAGGGTGTTGCGTCGGCCGTATTTAAGGGCTGCCCAGCCTGCGCTGACCGCACCGATGATACTACCTAATACTACGCTGGATACAGCCCAGCCAGTTTGAGCCGGTGACAATCCAAAGTATTCGCGGATTGGACCAATTGCGCCAGAGATAACAGCAGTGTCGTAACCTAATAAGATGCCTCCGAGCGCAGCGATACAACAAATCCTAACGATGTAGGCAAGATTGTGCTTTCGAGCTTCGGCCTTGGATGTAGCTTCCAT > 1175 VSAK1_25140 COG0477_Permeases_of_the_major_facilitator_superfamily hyopthetical_permease EDL54379.1 11 MEATSKAEARKHNIAYIVRICCIAALGGILLGYDTAVISGAIGPIREHFGLTPAQTGWAVSSVVLGSIIGAVSAGWAALKYGRRNTLFIAAVLFMISAIGSALAATFSFYVILRIVGGVAVGLACVVSPMYMSEVAPKDFRGRAVSMFQQSAVIGQTGVFYVNYLIAKGMSEAWLVDLGWRWMLGSEVIPAALFAVLLFIIPESPRWLVLKGRIDEAKTTLSKISNPKHAEQLILEIQDSLKDSLSTAKNKVSLRSPLLFAILVIGTFVAAAQQLTGINVIMYYTPEILKPITGSTENALFQTTFVGVVFILGNALGMYLIDKVGRLPLMKYGTFGCALGMFVVGYVLYQQTEGYAALFALCLYVVSYATSWGCACWTMISEIFPNSIRSRAMAIAVGAQWFTGFIVTQSFPMLNENAYLKENFNGAFAFWLFAILSIICMYVVVKYVPETKGVSLEKMEEAMAKKLGKKVPQSTSEARA gamma_subgroup Vibrio_shilonii_AK1 Vibrio_shilonii_AK1 ABCH01000008 76459..77901 Rosenberg,E.,_Ferriera,S.,_Johnson,J.,_Kravitz,S.,_Beeson,K.,_Sutton,G.,_Rogers,Y.-H.,_Friedman,R.,_Frazier,M._and_Venter,J.C. NA 0:1443 Annotation_was_added_by_the_NCBI_Prokaryotic_Genomes_AutomaticAnnotation_Pipeline_Group._Information_about_the_Pipeline_can_befound_here:http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html._Please_beaware_that_the_annotation_is_done_automatically_with_little_or_nomanual_curation. NA 14-JUN-2007 Vibrio_shilonii_AK1_1103207002043,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Vibrio_shilonii_A6CZ84_9VIBR.gb Vibrio_Pacini_1854 148837353 Submitted_(08-JUN-2007)_J_Craig_Venter_Institute,_9704_Medical_Center_Drive,_Rockville,_MD_20850,_USA NA ABCH01000008 NA NA Vibrionales purple_photosynthetic_bacteria_and_relatives NA 1443 NA genomic_DNA NA AK1 NA Vibrio_shilonii_corrig._Kushmaro_et_al._2001 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 391591 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Vibrionales,_Vibrionaceae,_Vibrio Direct_Submission NA ABCH01000008.1 TTAAGCACGTGCTTCAGATGTGGACTGTGGCACTTTTTTGCCCAATTTTTTCGCCATGGCTTCTTCCATTTTTTCCAGACTGACGCCTTTGGTTTCAGGTACATACTTAACAACAACGTACATACAGATGATAGAAAGAATCGCAAATAACCAGAACGCAAATGCACCATTAAAGTTCTCTTTTAGATAGGCATTTTCGTTGAGCATAGGGAAGGATTGAGTGACGATAAAGCCAGTAAACCATTGAGCACCAACGGCGATCGCCATCGCTCTAGAGCGGATGCTGTTCGGGAAAATCTCAGAAATCATGGTCCAACATGCGCAGCCCCATGAAGTGGCATAGGAAACAACGTAAAGACATAGCGCGAACAAGGCGGCATAACCTTCCGTTTGTTGATACAAAACATAGCCCACAACAAACATACCAAGTGCACATCCGAAGGTACCATATTTCATTAGCGGTAGACGTCCGACTTTGTCGATAAGATACATGCCAAGCGCATTACCTAGAATAAATACCACGCCAACGAAGGTAGTTTGGAATAGAGCGTTTTCTGTAGAGCCCGTAATCGGTTTCAGGATCTCAGGGGTGTAATACATGATGACGTTGATACCCGTTAACTGTTGCGCCGCAGCAACAAAGGTACCGATGACAAGAATAGCGAATAAGAGAGGAGAGCGTAAACTCACTTTGTTCTTAGCAGTGCTTAAACTGTCTTTAAGGGAGTCTTGGATTTCCAGAATTAGTTGTTCTGCATGTTTTGGGTTAGAGATTTTAGACAGTGTGGTTTTCGCTTCATCGATTCTCCCTTTGAGTACCAACCAACGAGGGGACTCTGGAATAATAAACAGTAACACTGCAAACAGTGCTGCCGGAATCACTTCGGAGCCCAGCATCCAACGCCAGCCTAGATCCACTAACCAAGCTTCTGACATACCTTTAGCGATAAGATAATTGACGTAGAAAACACCTGTTTGACCAATAACGGCAGACTGTTGGAACATACTGACGGCGCGCCCTCGAAAGTCTTTAGGAGCGACTTCAGACATATACATTGGGGAAACAACACATGCCAGACCGACGGCAACACCACCGACAATTCTTAAGATGACATAGAAGCTAAATGTGGCGGCTAACGCTGAACCAATGGCCGAAATCATAAAGAGCACGGCTGCGATGAATAGGGTGTTGCGACGGCCATACTTAAGAGCAGCCCAACCGGCACTGACTGCGCCGATAATACTGCCTAGTACGACACTGGATACGGCCCAGCCAGTTTGTGCTGGGGTTAAACCAAAGTGTTCTCTAATAGGGCCAATGGCGCCTGAAATTACCGCGGTATCATATCCTAGTAGTATCCCGCCTAGTGCTGCAATACAGCAGATTCGAACAATATAGGCAATATTGTGTTTTCGTGCTTCTGCCTTGGATGTTGCTTCCAT > 1176 Vdis_0407 InterPro_IPR016196:IPR005828;_KEGG:_cma:Cmaq_1414_major_facilitator_transporter;_PFAM:_General_substrate_transporter;_SPTR:_A8M920_Major_facilitator_superfamily_MFS_1;_PFAM:_Sugar_(and_other)_transporter general_substrate_transporter YP_003900859.1 11 MSGPTVPEHVRRRGLMLASISTFLAWALEYYDFLIYFSLIPYISELFFPKSNPLAALIYTLLVFAVGYFARPLGAIFFGHIGDKYGRRNALLGDAITMAAATVVIALLPTYSQIGIWAPTLLTIFRFVQGFGYGGEAGGGVVWALEFASPKWRGLVNGVLNSSMSVASLLATGLLLLVSAYYPIGVVGWRILFLSGAVVVIIGLIIRFAAPESILWERKREEGRIVKIPLATAIRRYWFSLILVILINLGLTFVFYAGYGFVTTFTKLLSSYMPELQRAFIKLTYLPLMLGSIGGIIGNTFGGYLTDLFGRRRMLIIPTAILLITIYPLYLALTTLSIPIMALSLALMYFIFTLSATVQTAYFSEIFPTEVRWSGIGFGWNLNAAIGSLAPTFALLLYTSLKGGMNPITAAALAPSIVVMIGAAMTIIGASIGPETVRKQLE Thermoprotei_Reysenbach_2002 Vulcanisaeta_distributa_DSM_14429 Vulcanisaeta_distributa_DSM_14429 NC_014537 395691..397019 Mavromatis,K.,_Sikorski,J.,_Pabst,E.,_Teshima,H.,_Lapidus,A.,_Lucas,S.,_Nolan,M.,_Glavina_Del_Rio,T.,_Cheng,J.F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Liolios,K.,_Ivanova,N.,_Mikhailova,N.,_Pati,A.,_Chen,A.,_Palaniappan,K.,_Land,M.,_Hauser,L.,_Chang,Y.J.,_Jeffries,C.D.,_Rohde,M.,_Spring,S.,_Goker,M.,_Wirth,R.,_Woyke,T.,_Bristow,J.,_Eisen,J.A.,_Markowitz,V.,_Hugenholtz,P.,_Klenk,H.P._and_Kyrpides,N.C. NA 0:1329 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002100.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4085237Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_Cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Vulcanisaeta_distributa_DSM_14429collection_date_::_September_1993lat_lon_::_Missingdepth_::_Missingalt_elev_::_Missingcountry_::_Japanenvironment_::_Fresh_water,_Hot_springnum_replicons_::_Missingref_biomaterial_::_DSM_14429,_JCM_11212biotic_relationship_::_Free_livingtrophic_level_::_Heterotrophrel_to_oxygen_::_Anaerobeisol_growth_condt_::_Missingsequencing_meth_::_WGS_454/Illuminaassembly_::_Newbler_v._2.3finishing_strategy_::_FinishedGOLD_Stamp_ID_::_Gi02950Type_Strain_::_YesGreengenes_ID_::_19003Isolation_Site_::_Hot_spring_from_Kanagawa,_Ohwakudani,_Japan_on_9/1993Cell_Shape_::_Rod-shapedMotility_::_NonmotileTemperature_Range_::_HyperthermophileTemperature_Optimum_::_90CpH_::_4.0_-_4.5Gram_Staining_::_Gram-Diseases_::_None##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_FinishedAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_30xSequencing_Technology_::_454/Illumina##Genome-Assembly-Data-END##COMPLETENESS:_full_length. NA 25-JAN-2012 Vulcanisaeta_distributa_DSM_14429_chromosome,_complete_genome. NA Thermoproteaceae_Zillig_and_Stetter_1982_emend._Burggraf_et_al._1997 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Vulcanisaeta_distributa_E1QU11_VULDI.gb Vulcanisaeta_Itoh_et_al._2002 307594149 Stand_Genomic_Sci_3_(2),_117-125_(2010) NA NC_014537 NA NA Thermoproteales_Zillig_and_Stetter_1982_emend._Burggraf_et_al._1997 not_Crenarchaeota_Cavalier-Smith_2002 21304741 1329 NA genomic_DNA NA DSM_14429 NA Vulcanisaeta_plures NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 572478 Archaea,_Crenarchaeota,_Thermoprotei,_Thermoproteales,_Thermoproteaceae,_Vulcanisaeta Complete_genome_sequence_of_Vulcanisaeta_distributa_type_strain_(IC-017) NA NC_014537.1 ATGAGTGGGCCAACTGTTCCTGAGCATGTTAGAAGGAGGGGCTTAATGCTCGCATCAATATCGACCTTCTTAGCGTGGGCTCTTGAGTATTACGACTTCCTAATCTACTTCTCATTGATACCATACATAAGCGAGTTATTCTTCCCAAAATCAAACCCATTGGCAGCACTCATATACACATTGCTTGTCTTCGCCGTTGGTTACTTCGCCAGGCCCCTTGGCGCAATATTCTTCGGCCACATAGGGGATAAGTATGGTAGGAGAAATGCCCTGCTTGGCGATGCCATTACAATGGCCGCGGCGACGGTAGTCATTGCATTACTGCCAACGTACTCACAAATAGGGATTTGGGCACCAACCCTACTCACCATATTCAGGTTTGTCCAGGGGTTTGGTTATGGCGGTGAGGCTGGCGGTGGTGTTGTGTGGGCCTTGGAATTTGCTTCACCAAAATGGCGCGGCTTGGTTAATGGCGTGCTTAATTCAAGCATGTCAGTCGCCTCCCTACTTGCAACGGGCCTATTACTACTTGTTAGTGCCTATTACCCAATAGGCGTAGTTGGTTGGAGGATATTGTTCCTAAGTGGCGCCGTTGTTGTTATCATCGGCTTAATCATAAGGTTCGCGGCCCCAGAGTCAATACTTTGGGAGAGGAAGAGGGAGGAGGGTAGGATTGTTAAGATTCCGTTGGCCACAGCCATTAGGAGGTATTGGTTCAGCCTAATCCTAGTCATATTAATTAACCTCGGCTTAACCTTCGTATTCTATGCGGGTTACGGCTTCGTAACAACATTCACTAAGTTACTATCAAGTTACATGCCGGAGCTTCAGAGGGCTTTCATTAAGTTAACATACCTACCGCTCATGCTTGGTAGTATTGGTGGTATAATAGGCAATACATTTGGTGGTTACTTAACTGACCTATTTGGTAGGAGGAGGATGCTTATAATACCGACAGCAATACTCCTAATCACAATATACCCACTTTACCTAGCCCTAACAACCCTCTCAATACCAATAATGGCCTTATCACTGGCCCTCATGTACTTCATATTCACCTTAAGCGCCACAGTGCAGACTGCTTACTTCTCCGAAATATTCCCAACAGAGGTCAGGTGGAGCGGGATTGGCTTTGGCTGGAACCTAAATGCAGCCATTGGTTCACTTGCACCGACCTTCGCATTACTACTATACACTAGCCTAAAGGGTGGTATGAACCCGATAACCGCGGCTGCACTGGCGCCGTCGATCGTCGTAATGATTGGTGCGGCAATGACAATAATAGGCGCATCAATAGGTCCCGAGACCGTTAGAAAGCAACTCGAATGA > 1177 Vdis_0535 COGs:_COG2814_Arabinose_efflux_permease;_InterPro_IPR016196:IPR005829:IPR003663:IPR005828;_KEGG:_sto:ST2557_sugar-proton_symport;_PFAM:_General_substrate_transporter;_SPTR:_Q96XF9_459aa_long_hypothetical_sugar-proton_symport;_TIGRFAM:_sugar_transporter;_PFAM:_Sugar_(and_other)_transporter;_TIGRFAM:_MFS_transporter,_sugar_porter_(SP)_family sugar_transporter YP_003900984.1 11 MDDIVDLRNKQIAYEDIIERLDENIASRIYWLVSIITALGGFLFGYDTGVIGSALIYIGPYFHLTSFEVAVLTSFTSVFAGIGALVAGPFIDRFGRKSLLIIDGIFYALFAVLSGLAISSIDLIIWRSLVGFAIGADTAVATGYISEFAPKRHRGKLASLQQLMIVVGMMTSFWVGYYLSMALPQTTNWRWMFGLGAIPAVILVALRFYLPESPRWLLIQGREEDAKKALAKLGVHVSEHIIPPKRELGFKEALSKQYIRRILLVVGLWLVFQQVTGINIILYYGPYIWKYLGFTGPRAILSTVIPYSIGFIATLFQIYLVDRWGRRTLGTIGFTGLLVSLVIMTVGAHYFALNDISIAVPLIFSAMVLFQVLFALGVGGVGWVLQGETMPTEFRGRGGGILAAIDWFANFAIIYIFPIWLSAYGMFSFWVLEDVLALAAVIYVLLLVPETKGLSVDQMPQLFSRPLREIRKRQ Thermoprotei_Reysenbach_2002 Vulcanisaeta_distributa_DSM_14429 Vulcanisaeta_distributa_DSM_14429 NC_014537 517192..518616 Mavromatis,K.,_Sikorski,J.,_Pabst,E.,_Teshima,H.,_Lapidus,A.,_Lucas,S.,_Nolan,M.,_Glavina_Del_Rio,T.,_Cheng,J.F.,_Bruce,D.,_Goodwin,L.,_Pitluck,S.,_Liolios,K.,_Ivanova,N.,_Mikhailova,N.,_Pati,A.,_Chen,A.,_Palaniappan,K.,_Land,M.,_Hauser,L.,_Chang,Y.J.,_Jeffries,C.D.,_Rohde,M.,_Spring,S.,_Goker,M.,_Wirth,R.,_Woyke,T.,_Bristow,J.,_Eisen,J.A.,_Markowitz,V.,_Hugenholtz,P.,_Klenk,H.P._and_Kyrpides,N.C. NA 0:1425 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP002100.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4085237Source_DNA_and_organism_available_from_Hans-Peter_Klenk_at_theGerman_Collection_of_Microorganisms_and_Cell_Cultures_(DSMZ)(hans-peter.klenk@dsmz.de)Contacts:_Jonathan_A._Eisen_(jaeisen@ucdavis.edu)_David_Bruce_(microbe@cuba.jgi-psf.org)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFFinishing_done_by_JGI-LANLAnnotation_by_JGI-ORNL_and_JGI-PGFThe_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._It_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##MIGS-Data-START##investigation_type_::_bacteria_archaeaproject_name_::_Vulcanisaeta_distributa_DSM_14429collection_date_::_September_1993lat_lon_::_Missingdepth_::_Missingalt_elev_::_Missingcountry_::_Japanenvironment_::_Fresh_water,_Hot_springnum_replicons_::_Missingref_biomaterial_::_DSM_14429,_JCM_11212biotic_relationship_::_Free_livingtrophic_level_::_Heterotrophrel_to_oxygen_::_Anaerobeisol_growth_condt_::_Missingsequencing_meth_::_WGS_454/Illuminaassembly_::_Newbler_v._2.3finishing_strategy_::_FinishedGOLD_Stamp_ID_::_Gi02950Type_Strain_::_YesGreengenes_ID_::_19003Isolation_Site_::_Hot_spring_from_Kanagawa,_Ohwakudani,_Japan_on_9/1993Cell_Shape_::_Rod-shapedMotility_::_NonmotileTemperature_Range_::_HyperthermophileTemperature_Optimum_::_90CpH_::_4.0_-_4.5Gram_Staining_::_Gram-Diseases_::_None##MIGS-Data-END####Genome-Assembly-Data-START##Finishing_Goal_::_FinishedCurrent_Finishing_Status_::_FinishedAssembly_Method_::_Newbler_v._2.3Genome_Coverage_::_30xSequencing_Technology_::_454/Illumina##Genome-Assembly-Data-END##COMPLETENESS:_full_length. NA 25-JAN-2012 Vulcanisaeta_distributa_DSM_14429_chromosome,_complete_genome. NA Thermoproteaceae_Zillig_and_Stetter_1982_emend._Burggraf_et_al._1997 /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Vulcanisaeta_distributa_E1QUT0_VULDI.gb Vulcanisaeta_Itoh_et_al._2002 307594149 Stand_Genomic_Sci_3_(2),_117-125_(2010) NA NC_014537 NA NA Thermoproteales_Zillig_and_Stetter_1982_emend._Burggraf_et_al._1997 not_Crenarchaeota_Cavalier-Smith_2002 21304741 1425 NA genomic_DNA NA DSM_14429 NA Vulcanisaeta_plures NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 572478 Archaea,_Crenarchaeota,_Thermoprotei,_Thermoproteales,_Thermoproteaceae,_Vulcanisaeta Complete_genome_sequence_of_Vulcanisaeta_distributa_type_strain_(IC-017) NA NC_014537.1 TTACTGCCTCTTCCTTATTTCCCGTAATGGCCTTGAGAATAGTTGTGGCATTTGGTCTACCGATAACCCCTTTGTCTCAGGCACGAGCAGTAATACGTATATCACGGCGGCCAGGGCAAGCACGTCCTCCAGTACCCAGAAGCTGAACATGCCGTAGGCGGAGAGCCATATTGGGAATATGTATATTATGGCGAAGTTCGCGAACCAATCAATCGCAGCCAATATACCGCCACCCCTACCCCTAAACTCCGTGGGCATGGTCTCACCCTGCAACACCCAACCAACACCACCAACGCCTAGTGCGAATAATACCTGGAAGAGAACCATTGCCGAGAATATCAGTGGCACAGCTATGGATATGTCATTCAGCGCAAAGTAGTGGGCGCCCACCGTCATTATCACGAGGCTCACGAGTAGGCCCGTGAAGCCGATAGTACCGAGCGTCCTCCTACCCCACCTATCCACTAGGTATATTTGGAAGAGCGTTGCTATGAAGCCTATGGAGTACGGTATTACCGTAGACAGTATGGCCCTGGGGCCCGTGAATCCAAGGTACTTCCATATGTACGGGCCATAGTAGAGGATTATGTTTATGCCAGTCACCTGCTGAAACACCAACCAAAGCCCAACCACCAGTAGGATCCTCCTGATATACTGCTTCGAAAGAGCCTCCTTAAATCCCAACTCCCTCTTCGGCGGAATTATGTGTTCACTAACGTGTACCCCCAACTTAGCCAAGGCCTTCTTCGCATCCTCCTCCCTGCCCTGTATCAGCAACCACCTGGGACTCTCCGGTAAGTAGAACCTTAGGGCCACGAGTATTACCGCCGGTATCGCACCAAGGCCAAACATCCACCTCCAATTTGTCGTTTGAGGCAATGCCATTGATAGGTAGTAACCAACCCAGAAGGAGGTCATCATGCCCACGACAATCATTAACTGCTGAAGTGATGCCAACTTACCCCTATGCCTCTTGGGTGCGAATTCGGATATGTAGCCCGTGGCCACCGCCGTGTCGGCACCGATGGCAAACCCAACGAGACTTCTCCAAATGATTAAGTCAATCGACGATATCGCCAGGCCAGATAACACAGCGAACAACGCATAGAATATTCCATCAATTATCAGGAGACTCTTCCTACCGAACCTATCAATGAACGGACCAGCCACCAGGGCGCCAATGCCGGCAAATACACTGGTAAATGAGGTTAGTACGGCAACCTCAAATGATGTTAAATGAAAATATGGACCAATATAAATAAGTGCTGACCCAATGACACCCGTATCATAACCAAATAGAAAGCCTCCCAATGCCGTTATTATTGAGACCAACCAGTAAATCCTACTGGCAATATTCTCATCAAGTCTCTCAATTATATCTTCATAGGCAATTTGTTTATTCCTTAGATCTACGATGTCATCCAT > 1178 XALc_2982 NA citrate-proton_symporter_protein YP_003377453.1 11 MPPAAMDAPPHGAAAVFRVVTGNFLEMYDFMVYGFYATAIGHAFFPAHSAFSSLMLSLATFGAGFLMRPIGGLVLGSYIDRHGRRKGLTLSLMSVGVLLIAFVPGYASIGILAPALVLLGRRLLQGFSAGAELGGVSVYLAEIATPGRRGFYVAWQSASQQVAVVFAAALGVALHTLLSESAMDSWGWRIPFFIGSLILPLIFLIRRSLQETPEFAARQAPDLAGIAQSLRANAGLVLAGVGLVLMTTVSFYLITAYMPTYGRSELHLSELDSLVVTGCIGLSNFVWLPVMGALSDRIGRKPLLVFATVTMLLTVWPALHWLVDAPSFARLLLVGEWLSLLYGAYNGAMVVALTEVMPAEVRTTGFSLAYSLATATMGGFTPVVCTWLIHTTHSPAAPALWLSLAALIGLSCSLLLFRRQRGMLSASAG gamma_subgroup Xanthomonas_albilineans_GPE_PC73 Xanthomonas_albilineans_GPE_PC73 NC_013722 3523780..3525069 Pieretti,I.,_Royer,M.,_Barbe,V.,_Carrere,S.,_Koebnik,R.,_Cociancich,S.,_Couloux,A.,_Darrasse,A.,_Gouzy,J.,_Jacques,M.A.,_Lauber,E.,_Manceau,C.,_Mangenot,S.,_Poussier,S.,_Segurens,B.,_Szurek,B.,_Verdier,V.,_Arlat,M._and_Rott,P. NA 0:1290 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_FP565176.COMPLETENESS:_full_length. NA 13-OCT-2011 Xanthomonas_albilineans_GPE_PC73_chromosome,_complete_genome. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Xanthomonas_albilineans_D2UGE8_XANAP.gb Xanthomonas_Dowson_1939_(Approved_Lists_1980)_emend._van_den_Mooter_and_Swings_1990 285016821 BMC_Genomics_10,_616_(2009) NA NC_013722 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives 20017926 1290 NA genomic_DNA NA GPE_PC73 NA Xanthomonas_albilineans_var._paspali NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 380358 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Xanthomonas The_complete_genome_sequence_of_Xanthomonas_albilineans_provides_new_insights_into_the_reductive_genome_evolution_of_the_xylem-limited_Xanthomonadaceae NA NC_013722.1 ATGCCACCTGCCGCCATGGATGCTCCACCCCATGGCGCCGCCGCTGTGTTCCGCGTGGTCACCGGCAATTTCCTCGAAATGTACGACTTCATGGTCTATGGCTTCTATGCCACCGCCATCGGTCATGCGTTCTTCCCTGCGCACAGCGCATTCTCCTCGCTGATGCTGTCGCTGGCGACGTTCGGCGCCGGCTTCCTGATGCGCCCAATCGGTGGCTTGGTGTTGGGCAGTTACATCGATCGGCATGGGCGCCGCAAAGGTCTGACCCTGAGCCTGATGTCCGTGGGCGTTTTGTTGATCGCCTTTGTGCCGGGTTACGCCAGCATCGGCATACTCGCACCGGCGCTGGTATTGCTCGGTCGTCGCCTGCTACAGGGCTTTTCCGCTGGCGCGGAACTGGGCGGCGTGTCGGTGTATCTGGCCGAGATCGCCACGCCGGGCCGACGCGGTTTCTATGTGGCCTGGCAATCGGCCAGCCAGCAGGTCGCGGTGGTGTTTGCCGCGGCACTCGGCGTCGCCCTGCATACGCTGCTATCCGAGAGCGCGATGGACAGTTGGGGATGGCGCATCCCGTTCTTCATCGGCAGCCTGATCTTGCCGTTGATTTTCCTGATCCGCCGTTCGCTGCAAGAAACGCCGGAGTTCGCCGCGCGCCAAGCGCCAGACCTGGCTGGCATCGCCCAGTCGCTGCGCGCCAATGCCGGGTTGGTGCTGGCTGGCGTCGGGCTGGTGCTGATGACTACCGTGTCGTTCTATCTGATCACCGCCTACATGCCGACCTATGGTCGCTCGGAGCTGCACTTGAGCGAGCTGGACAGCCTGGTGGTCACCGGCTGCATCGGTCTGTCGAACTTTGTGTGGCTACCGGTGATGGGCGCGCTGAGCGATCGCATCGGTCGCAAGCCGTTGCTGGTGTTCGCCACGGTGACCATGCTACTGACGGTATGGCCGGCGCTGCATTGGCTGGTCGACGCTCCTTCGTTCGCGCGGCTGCTGCTGGTCGGCGAATGGCTATCGCTACTGTATGGCGCCTACAACGGCGCGATGGTGGTGGCCTTGACCGAAGTGATGCCGGCAGAGGTGCGCACCACCGGCTTTTCGTTGGCCTACAGTCTGGCCACGGCGACGATGGGCGGCTTCACCCCGGTGGTGTGCACGTGGTTGATCCACACCACCCACAGTCCGGCCGCGCCCGCCTTATGGCTGTCGTTGGCGGCGCTGATCGGCCTGAGCTGCTCGTTGCTGCTGTTCCGTCGTCAGCGCGGCATGCTGAGCGCCAGCGCCGGTTGA > 1179 XAC2484 NA metabolite_transport_protein NP_642799.1 11 MICQNRPSCFSGCRSTMTAAAPLATPTNSPARVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPAGDGSAAMLQSLATFAVAFVARPVGSAVFGHFGDRVGRKATLVAALLTMGLSTVAIGLLPSYAQIGVFAPALLALCRFGQGLGLGGEWGGAVLLATENAPPGKRVWYGMFPQLGAPLGFLLSTGTFLGMGAVLDDAQFMQWGWRVPFLASALHVLTGLWVRLSITETPDFQRTLDRKTRVRLPLGTVVWQHWPALIVGTLGAFATFVLFYLMTVFALGYGTKTLGYDKEQFLLLQMAGIVFFALGIPLSAKFGDRHGAPLAMMLASIAIVAFGLAFAPLFQASHPLQVLAFLSLGFFFMGLTYGPCGTLLAELYPTEVRYTGASLSFNLASILGAAPAPYVATQLAASYGVQSVGYYLGGAAVLSLVALVVARRWRR gamma_subgroup Xanthomonas_axonopodis_pv._citri_str._306 Xanthomonas_axonopodis_pv._citri_str._306 NC_003919 2892519..2893847 da_Silva,A.C.R.,_Ferro,J.A.,_Reinach,F.C.,_Farah,C.S.,_Furlan,L.R.,_Quaggio,R.B.,_Monteiro-Vitorello,C.B.,_Van_Sluys,M.A.,_Almeida,N.F._Jr.,_Alves,L.M.C.,_do_Amaral,A.M.,_Bertolini,M.C.,_Camargo,L.E.A.,_Camarotte,G.,_Cannavan,F.,_Cardozo,J.,_Chambergo,F.,_Ciapina,L.P.,_Cicarelli,R.M.B.,_Coutinho,L.L.,_Cursino-Santos,J.R.,_El-Dorry,H.,_Faria,J.B.,_Ferreira,A.J.S.,_Ferreira,R.C.C.,_Ferro,M.I.T.,_Formighieri,E.F.,_Franco,M.C.,_Greggio,C.C.,_Gruber,A.,_Katsuyama,A.M.,_Kishi,L.T.,_Leite,R.P._Jr.,_Lemos,E.G.M.,_Lemos,M.V.F.,_Locali,E.C.,_Machado,M.A.,_Madeira,A.M.B.N.,_Martinez-Rossi,N.M.,_Martins,E.C.,_Meidanis,J.,_Menck,C.F.M.,_Miyaki,C.Y.,_Moon,D.H.,_Moreira,L.M.,_Novo,M.T.M.,_Okura,V.K.,_Oliveira,M.C.,_Oliveira,V.R.,_Pereira,H.A._Jr.,_Rossi,A.,_Sena,J.A.D.,_Silva,C.,_de_Souza,R.F.,_Spinola,L.A.F.,_Takita,M.A.,_Tamura,R.E.,_Teixeira,E.C.,_Tezza,R.I.D.,_Trindade_dos_Santos,M.,_Truffi,D.,_Tsai,S.M.,_White,F.F.,_Setubal,J.C._and_Kitajima,J.P. NA 0:1329 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE008923.COMPLETENESS:_full_length. NA 20-JAN-2012 Xanthomonas_axonopodis_pv._citri_str._306_chromosome,_complete_genome. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Xanthomonas_axonopodis_Q8PJP6_XANAC.gb Xanthomonas_Dowson_1939_(Approved_Lists_1980)_emend._van_den_Mooter_and_Swings_1990 21240774 Nature_417_(6887),_459-463_(2002) NA NC_003919 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives 12024217 1329 NA genomic_DNA NA 306 NA Xanthomonas_axonopodis_Starr_and_Garces_1950_(Approved_Lists_1980)_emend._van_den_Mooter_and_Swings_1990 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 190486 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Xanthomonas Comparison_of_the_genomes_of_two_Xanthomonas_pathogens_with_differing_host_specificities NA NC_003919.1 TCAGCGACGCCAGCGCCGCGCCACTACCAGCGCGACCAGGCTCAGCACCGCCGCCCCGCCCAGGTAATACCCCACCGATTGCACGCCGTAACTGGCCGCCAGTTGCGTGGCCACGTAGGGCGCCGGCGCCGCACCCAGGATGCTGGCCAGATTGAACGACAGCGACGCGCCGGTGTAGCGCACCTCGGTGGGATACAGCTCGGCCAGCAGCGTGCCGCAGGGACCATAGGTCAGGCCCATGAAGAAAAACCCTAGCGACAGGAACGCCAGCACCTGCAACGGGTGGCTGGCCTGGAACAGCGGCGCAAACGCCAGGCCGAATGCCACGATGGCGATGCTGGCCAGCATCATCGCCAGCGGCGCGCCGTGCCGGTCGCCAAACTTGGCCGACAACGGAATGCCCAGCGCAAAAAACACGATGCCGGCCATCTGCAACAACAGGAATTGTTCCTTGTCGTAACCCAGCGTCTTGGTGCCATAGCCCAGTGCAAAGACCGTCATCAGATAAAACAGCACGAAGGTGGCGAACGCGCCCAGCGTGCCGACGATCAGTGCCGGCCAATGCTGCCAGACCACGGTGCCCAGCGGCAGCCTGACACGCGTCTTGCGGTCCAGCGTCCTCTGGAAATCTGGCGTCTCGGTGATGCTCAGGCGTACCCACAGCCCCGTCAGTACGTGCAAGGCACTGGCCAAAAACGGCACGCGCCAGCCCCACTGCATGAACTGCGCATCGTCCAGCACTGCGCCCATGCCCAGAAAGGTGCCAGTGGACAACAAAAACCCCAGCGGCGCGCCCAGTTGCGGAAACATGCCGTACCACACGCGCTTGCCCGGCGGCGCGTTCTCGGTGGCCAGCAGCACGGCCCCGCCCCATTCGCCGCCCAGCCCCAACCCCTGGCCGAAGCGGCACAGCGCCAGCAATGCGGGCGCAAATACACCGATCTGCGCGTAACTGGGCAGCAGGCCGATCGCCACGGTGGACAACCCCATCGTCAGCAGCGCCGCCACCAGCGTGGCCTTGCGCCCTACCCGGTCGCCGAAGTGACCGAACACCGCCGATCCCACTGGCCGCGCGACAAACGCCACCGCAAAGGTGGCCAACGACTGCAGCATCGCCGCACTGCCATCGCCGGCGGGAAAGAACAGTGTGGGGAACACCAGCACTGCGGCGGTGGCGTAGATATAGAAATCGAAGAACTCGATGGTGGTGCCGATCAGGCTGGCGAACAGCACGCGCGCGGGTGAATTGGTGGGTGTGGCGAGCGGCGCGGCGGCAGTCATCGTTGATCGACATCCAGAAAAACAAGACGGCCGATTCTGGCAGATCAC > 1180 XAC0110 NA proline-betaine_transporter NP_640466.1 11 MRSHFGWFKRRRQLQLDEVTVVDRSMLRRAVGAAALGNAMEWFDFGVYGYLAVTLGQVFFPASNPTAQLIATFATFTVAFLVRPIGGMVFGPLGDRYGRQKVLAATMILMALGTFSIGLIPAYQRIGLWAPALLLLARVLQGFSTGGEYGGAATFIAEYATDRNRGLMGSWLEFGTLGGYIAGAATVTALHMSVTPAQMLDWGWRVPFLIAGPLGLLGLYMRMKLEETPAFRAHTEQSEQRERQTAAQGLTTLLRLHWPQLLKCVGLVLVFNVTDYMLLTYMPSYLSVTMGYAESKGLLLIILVMLVMMPLNIVGGMFSDKLGRRPMIIGACIALFALAIPCLLLVGSGNDGLIFAGLMLLGLALVCFTSSMPSTLPALFYTPVRYSALSIAFNVSVSLFGGTTPLVTAWLVERTGDPLVPAYYLMGAAAIGLLTMLFVRETAGLPLRGSPPAVASDAEARALLQADSPVTVDAQLPVTTAASMGQPRTA gamma_subgroup Xanthomonas_axonopodis_pv._citri_str._306 Xanthomonas_axonopodis_pv._citri_str._306 NC_003919 127200..128672 da_Silva,A.C.R.,_Ferro,J.A.,_Reinach,F.C.,_Farah,C.S.,_Furlan,L.R.,_Quaggio,R.B.,_Monteiro-Vitorello,C.B.,_Van_Sluys,M.A.,_Almeida,N.F._Jr.,_Alves,L.M.C.,_do_Amaral,A.M.,_Bertolini,M.C.,_Camargo,L.E.A.,_Camarotte,G.,_Cannavan,F.,_Cardozo,J.,_Chambergo,F.,_Ciapina,L.P.,_Cicarelli,R.M.B.,_Coutinho,L.L.,_Cursino-Santos,J.R.,_El-Dorry,H.,_Faria,J.B.,_Ferreira,A.J.S.,_Ferreira,R.C.C.,_Ferro,M.I.T.,_Formighieri,E.F.,_Franco,M.C.,_Greggio,C.C.,_Gruber,A.,_Katsuyama,A.M.,_Kishi,L.T.,_Leite,R.P._Jr.,_Lemos,E.G.M.,_Lemos,M.V.F.,_Locali,E.C.,_Machado,M.A.,_Madeira,A.M.B.N.,_Martinez-Rossi,N.M.,_Martins,E.C.,_Meidanis,J.,_Menck,C.F.M.,_Miyaki,C.Y.,_Moon,D.H.,_Moreira,L.M.,_Novo,M.T.M.,_Okura,V.K.,_Oliveira,M.C.,_Oliveira,V.R.,_Pereira,H.A._Jr.,_Rossi,A.,_Sena,J.A.D.,_Silva,C.,_de_Souza,R.F.,_Spinola,L.A.F.,_Takita,M.A.,_Tamura,R.E.,_Teixeira,E.C.,_Tezza,R.I.D.,_Trindade_dos_Santos,M.,_Truffi,D.,_Tsai,S.M.,_White,F.F.,_Setubal,J.C._and_Kitajima,J.P. NA 0:1473 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE008923.COMPLETENESS:_full_length. NA 20-JAN-2012 Xanthomonas_axonopodis_pv._citri_str._306_chromosome,_complete_genome. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Xanthomonas_axonopodis_Q8PR56_XANAC.gb Xanthomonas_Dowson_1939_(Approved_Lists_1980)_emend._van_den_Mooter_and_Swings_1990 21240774 Nature_417_(6887),_459-463_(2002) NA NC_003919 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives 12024217 1473 NA genomic_DNA NA 306 NA Xanthomonas_axonopodis_Starr_and_Garces_1950_(Approved_Lists_1980)_emend._van_den_Mooter_and_Swings_1990 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 190486 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Xanthomonas Comparison_of_the_genomes_of_two_Xanthomonas_pathogens_with_differing_host_specificities NA NC_003919.1 ATGCGTTCGCACTTTGGCTGGTTCAAACGCCGCCGCCAGCTGCAACTGGATGAGGTCACCGTGGTGGACCGCAGCATGCTGCGCAGGGCCGTCGGCGCTGCGGCGCTCGGCAATGCGATGGAGTGGTTCGACTTCGGCGTGTACGGCTATCTGGCGGTGACGCTGGGCCAGGTGTTCTTCCCGGCAAGCAACCCTACCGCACAATTGATCGCGACCTTCGCCACCTTCACCGTGGCCTTTCTGGTGCGGCCGATCGGCGGCATGGTCTTCGGACCGCTCGGCGACCGCTACGGGCGCCAGAAAGTCCTGGCCGCCACGATGATCCTGATGGCGCTGGGCACCTTCAGTATCGGACTGATTCCGGCCTACCAGCGCATTGGCCTGTGGGCGCCTGCACTGCTGTTGCTGGCGCGCGTGCTGCAGGGATTTTCCACCGGCGGCGAATACGGTGGCGCGGCCACCTTCATTGCCGAATACGCCACCGACCGCAATCGCGGCCTGATGGGCAGCTGGCTGGAGTTCGGCACGCTGGGTGGCTACATCGCCGGCGCCGCCACCGTGACCGCCTTGCACATGAGCGTGACTCCGGCGCAGATGCTCGATTGGGGCTGGCGCGTGCCGTTCCTGATCGCCGGGCCGTTGGGGCTGCTGGGCCTGTACATGCGCATGAAGCTGGAGGAGACCCCGGCATTTCGCGCCCATACCGAACAATCCGAACAGCGCGAGCGGCAGACCGCCGCGCAGGGCCTGACCACGCTGCTGCGCCTGCATTGGCCGCAACTGCTCAAGTGCGTGGGCCTGGTACTGGTGTTCAACGTCACCGACTACATGCTGCTGACCTACATGCCCAGCTACCTCAGCGTCACGATGGGTTACGCCGAGAGCAAGGGCTTGTTGCTGATCATCCTGGTGATGCTGGTGATGATGCCGCTCAACATCGTCGGTGGCATGTTCAGCGACAAACTGGGCCGGCGGCCGATGATCATCGGTGCCTGCATCGCACTGTTTGCGTTGGCGATCCCGTGCCTGTTGCTGGTCGGCAGCGGCAACGATGGGCTGATCTTCGCCGGACTGATGCTGCTTGGCCTGGCCCTGGTGTGCTTCACCAGCTCGATGCCGTCCACCTTGCCGGCGCTGTTCTACACGCCGGTGCGCTACAGCGCGTTGTCGATTGCCTTCAACGTTTCGGTGTCGTTGTTTGGCGGCACCACGCCGTTGGTCACTGCCTGGCTGGTGGAGCGCACCGGCGACCCGCTGGTGCCGGCCTACTACCTGATGGGCGCAGCGGCGATCGGCTTGTTGACCATGCTGTTCGTGCGCGAAACCGCAGGATTGCCGCTACGCGGCTCGCCGCCGGCGGTGGCCAGCGATGCCGAAGCGCGCGCCCTGCTGCAGGCCGACAGCCCGGTGACGGTGGATGCGCAGTTGCCCGTCACCACCGCAGCCTCGATGGGCCAACCGCGCACGGCGTGA > 1181 XCC1685 NA MFS_transporter NP_637055.1 11 MTSSSTSAAATASSAQIAARIDRLPASATLWRLVGLLALGGFFELYDLFQTAYISPGLIRDGIFASGNDGAFGMSDQAAFAAATFLGLFVGAALLSPFADRFGRRLVFTVALVWYTAATVAMGLQSTATAVIVLRFVVGIGLGIELVTIDTYLSELVPRHMRGAAFAFAFFLQFLAVPSVALSAWLLVPHAPLGVSGWRWVVLLSGVFALAIWWLRSRLPESARWLAAQGRHAEAEAVMAQLEAACSRDLGRALPPPEPVQRVAAPDSRLSALWRPPYRGRIGMLVVFQIFQAIGFFGFGNWLPALINAQGAGVTKSLAYAFAISLAYPLAPLLLLRVAHRWENKWQISASALGAVVFGVLFALQHAPLGMIACGAMIAFCNAWMSFAYHGYQAELFPTALRARAVGFCYSFSRLSTAGSSVLIGWLLAQTGSHGVLAFIVISMTIVASVIAAFGPRTRNRALEDIAG gamma_subgroup Xanthomonas_campestris_pv._campestris_str._ATCC_33913 Xanthomonas_campestris_pv._campestris_str._ATCC_33913 NC_003902 1960780..1962186 da_Silva,A.C.R.,_Ferro,J.A.,_Reinach,F.C.,_Farah,C.S.,_Furlan,L.R.,_Quaggio,R.B.,_Monteiro-Vitorello,C.B.,_Van_Sluys,M.A.,_Almeida,N.F._Jr.,_Alves,L.M.C.,_do_Amaral,A.M.,_Bertolini,M.C.,_Camargo,L.E.A.,_Camarotte,G.,_Cannavan,F.,_Cardozo,J.,_Chambergo,F.,_Ciapina,L.P.,_Cicarelli,R.M.B.,_Coutinho,L.L.,_Cursino-Santos,J.R.,_El-Dorry,H.,_Faria,J.B.,_Ferreira,A.J.S.,_Ferreira,R.C.C.,_Ferro,M.I.T.,_Formighieri,E.F.,_Franco,M.C.,_Greggio,C.C.,_Gruber,A.,_Katsuyama,A.M.,_Kishi,L.T.,_Leite,R.P._Jr.,_Lemos,E.G.M.,_Lemos,M.V.F.,_Locali,E.C.,_Machado,M.A.,_Madeira,A.M.B.N.,_Martinez-Rossi,N.M.,_Martins,E.C.,_Meidanis,J.,_Menck,C.F.M.,_Miyaki,C.Y.,_Moon,D.H.,_Moreira,L.M.,_Novo,M.T.M.,_Okura,V.K.,_Oliveira,M.C.,_Oliveira,V.R.,_Pereira,H.A._Jr.,_Rossi,A.,_Sena,J.A.D.,_Silva,C.,_de_Souza,R.F.,_Spinola,L.A.F.,_Takita,M.A.,_Tamura,R.E.,_Teixeira,E.C.,_Tezza,R.I.D.,_Trindade_dos_Santos,M.,_Truffi,D.,_Tsai,S.M.,_White,F.F.,_Setubal,J.C._and_Kitajima,J.P. NA 0:1407 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE008922.COMPLETENESS:_full_length. NA 20-JAN-2012 Xanthomonas_campestris_pv._campestris_str._ATCC_33913_chromosome,_complete_genome. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Xanthomonas_campestris_Q8PA08_XANCP.gb Xanthomonas_Dowson_1939_(Approved_Lists_1980)_emend._van_den_Mooter_and_Swings_1990 21229478 Nature_417_(6887),_459-463_(2002) NA NC_003902 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives 12024217 1407 NA genomic_DNA NA ATCC_33913 NA Xanthomonas_campestris_var._armoraceae NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 190485 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Xanthomonas Comparison_of_the_genomes_of_two_Xanthomonas_pathogens_with_differing_host_specificities NA NC_003902.1 TTACCCCGCGATGTCTTCCAAAGCACGATTGCGCGTGCGTGGGCCGAACGCAGCAATCACGCTGGCCACGATCGTCATGCTGATCACGATGAAGGCCAGCACGCCGTGGCTGCCGGTCTGCGCCAGCAGCCAACCGATCAACACGCTGCTGCCGGCCGTAGACAACCGGCTGAAGGAATAGCAAAAACCCACCGCACGTGCGCGCAGTGCCGTGGGGAACAGTTCGGCCTGGTAGCCGTGGTAGGCAAAGCTCATCCACGCATTGCAGAAGGCAATCATCGCCCCGCAGGCAATCATGCCCAGCGGCGCGTGCTGTAGCGCGAAGAGCACGCCAAATACCACTGCACCCAGAGCCGATGCACTGATCTGCCATTTGTTTTCCCAGCGATGCGCAACACGCAGCAGCAACAGTGGCGCCAGTGGGTAAGCGAGTGAAATCGCAAAGGCATACGCCAGGCTCTTGGTCACCCCGGCGCCTTGCGCGTTGATGAGCGCAGGCAGCCAGTTGCCGAAACCGAAGAAGCCGATGGCCTGGAAGATCTGGAACACCACCAGCATGCCGATACGCCCGCGGTAGGGCGGCCGCCACAATGCGGATAGACGGCTGTCGGGTGCGGCGACCCGTTGCACCGGTTCCGGCGGCGGCAACGCCCGGCCAAGATCGCGGCTGCAGGCAGCTTCGAGCTGGGCCATCACCGCTTCGGCCTCGGCATGCCGCCCTTGCGCCGCCAGCCAGCGTGCGGACTCCGGCAGCCGGCTGCGCAGCCACCAGATCGCCAGCGCAAACACACCGCTCAGCAATACCACCCAGCGCCAGCCGCTGACACCCAGCGGCGCGTGCGGCACCAGCAGCCAGGCGCTCAGCGCCACGCTGGGCACCGCCAGGAACTGCAGGAAAAACGCGAACGCAAATGCGGCCCCGCGCATGTGACGCGGTACCAGTTCGGACAGGTAGGTATCGATGGTCACCAGTTCGATGCCCAGCCCGATCCCCACCACAAAGCGCAGCACGATCACTGCCGTGGCAGTGCTCTGCAGGCCCATGGCCACCGTGGCGGCGGTGTACCAGACCAACGCCACGGTGAACACCAGGCGGCGACCGAAGCGATCGGCAAAGGGGCTGAGCAGGGCGGCCCCGACGAACAGACCAAGAAAGGTCGCCGCGGCAAACGCGGCTTGATCGGACATGCCGAAGGCGCCGTCATTGCCGCTGGCAAAGATGCCGTCGCGAATGAGCCCCGGGCTGATATAGGCGGTCTGGAAAAGGTCGTACAACTCGAAGAAACCGCCCAGCGCCAGCAGCCCGACCAGCCGCCACAGCGTGGCGCTGGCGGGCAGGCGGTCGATGCGCGCGGCGATCTGCGCACTGCTCGCCGTCGCGGCAGCGGAGGTGGAAGAAGACGTCAT > 1182 XCC0083 NA proline/betaine_transporter NP_635478.1 11 MHDTRAIRSHFGWFKRRRQLQLDEVTVVDRGMLRKAVGAAALGNAMEWFDFGVYGYLAVTLGQVFFPSSSPTAQLIATFATFTVAFLVRPIGGMVFGPLGDRYGRQKVLAATMILMALGTFSIGLIPSYAQIGLWAPALLLLARLLQGFSTGGEYGGAATFIAEYATDRNRGLMGSWLEFGTLGGYIAGAATVTALHMALSQAQMLDWGWRVPFLVAGPLGLLGLYMRMKLEETPAFRAYTEQSEQRERETAGQGLMTLLRLHWPQLLKCVGLVLVFNVTDYMLLTYMPSYLSVTMGYAESKGLLLIILVMLVMMPLNVVGGMFSDKLGRRPMIIGACAALFALAIPCLLLIGSGSDVLIFTGLMLLGLALVCFTSSMPSTLPALFYTPVRYSALSIAFNVSVSLFGGTTPLVTAWLVERTGDPLVPAYYLMGAAAIGLVTMLFVRETAGLPLRGSPPAVASDAEARALLQGDSPVTVDAQLPLSGTPSIGQPRPA gamma_subgroup Xanthomonas_campestris_pv._campestris_str._ATCC_33913 Xanthomonas_campestris_pv._campestris_str._ATCC_33913 NC_003902 97851..99341 da_Silva,A.C.R.,_Ferro,J.A.,_Reinach,F.C.,_Farah,C.S.,_Furlan,L.R.,_Quaggio,R.B.,_Monteiro-Vitorello,C.B.,_Van_Sluys,M.A.,_Almeida,N.F._Jr.,_Alves,L.M.C.,_do_Amaral,A.M.,_Bertolini,M.C.,_Camargo,L.E.A.,_Camarotte,G.,_Cannavan,F.,_Cardozo,J.,_Chambergo,F.,_Ciapina,L.P.,_Cicarelli,R.M.B.,_Coutinho,L.L.,_Cursino-Santos,J.R.,_El-Dorry,H.,_Faria,J.B.,_Ferreira,A.J.S.,_Ferreira,R.C.C.,_Ferro,M.I.T.,_Formighieri,E.F.,_Franco,M.C.,_Greggio,C.C.,_Gruber,A.,_Katsuyama,A.M.,_Kishi,L.T.,_Leite,R.P._Jr.,_Lemos,E.G.M.,_Lemos,M.V.F.,_Locali,E.C.,_Machado,M.A.,_Madeira,A.M.B.N.,_Martinez-Rossi,N.M.,_Martins,E.C.,_Meidanis,J.,_Menck,C.F.M.,_Miyaki,C.Y.,_Moon,D.H.,_Moreira,L.M.,_Novo,M.T.M.,_Okura,V.K.,_Oliveira,M.C.,_Oliveira,V.R.,_Pereira,H.A._Jr.,_Rossi,A.,_Sena,J.A.D.,_Silva,C.,_de_Souza,R.F.,_Spinola,L.A.F.,_Takita,M.A.,_Tamura,R.E.,_Teixeira,E.C.,_Tezza,R.I.D.,_Trindade_dos_Santos,M.,_Truffi,D.,_Tsai,S.M.,_White,F.F.,_Setubal,J.C._and_Kitajima,J.P. NA 0:1491 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE008922.COMPLETENESS:_full_length. NA 20-JAN-2012 Xanthomonas_campestris_pv._campestris_str._ATCC_33913_chromosome,_complete_genome. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Xanthomonas_campestris_Q8PE98_XANCP.gb Xanthomonas_Dowson_1939_(Approved_Lists_1980)_emend._van_den_Mooter_and_Swings_1990 21229478 Nature_417_(6887),_459-463_(2002) NA NC_003902 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives 12024217 1491 NA genomic_DNA NA ATCC_33913 NA Xanthomonas_campestris_var._armoraceae NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 190485 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Xanthomonas Comparison_of_the_genomes_of_two_Xanthomonas_pathogens_with_differing_host_specificities NA NC_003902.1 ATGCACGACACGCGCGCGATCCGCTCGCATTTCGGTTGGTTCAAACGCCGCCGCCAATTGCAACTCGACGAGGTCACCGTGGTGGACCGCGGCATGCTGCGCAAGGCCGTGGGCGCGGCCGCGCTGGGCAATGCAATGGAATGGTTCGACTTCGGCGTCTATGGCTATCTGGCAGTGACGCTGGGCCAGGTGTTCTTTCCGTCCAGCAGTCCCACCGCGCAGTTGATCGCCACCTTTGCGACCTTCACCGTGGCGTTTTTGGTGCGGCCGATCGGCGGCATGGTATTCGGCCCGCTTGGTGATCGCTATGGCCGGCAAAAGGTGCTGGCGGCCACCATGATCCTGATGGCGCTGGGCACCTTCAGCATCGGCCTGATTCCCTCCTACGCGCAGATCGGCCTGTGGGCGCCGGCGCTGTTGTTGCTGGCGCGGTTGCTGCAAGGGTTTTCCACCGGCGGCGAATACGGCGGCGCGGCGACCTTCATTGCCGAATACGCCACCGACCGCAATCGCGGCTTGATGGGCAGTTGGCTGGAATTTGGCACGTTGGGCGGCTATATCGCCGGTGCGGCCACCGTTACCGCGCTGCACATGGCGCTGAGCCAGGCGCAGATGCTGGACTGGGGCTGGCGGGTGCCATTCCTGGTGGCCGGGCCGCTGGGGTTGCTCGGCCTGTACATGCGCATGAAGCTGGAAGAAACCCCGGCGTTTCGCGCCTATACCGAACAATCCGAACAGCGCGAACGCGAAACCGCAGGCCAGGGCCTGATGACCCTGCTGCGCCTGCACTGGCCGCAGCTGCTCAAATGCGTGGGCCTGGTGCTGGTGTTCAACGTCACCGACTACATGCTGCTGACCTACATGCCCAGCTATCTCAGCGTCACCATGGGCTACGCCGAGAGCAAGGGCTTGCTGCTGATCATCCTGGTGATGCTGGTGATGATGCCGCTCAACGTGGTCGGTGGCATGTTCAGCGACAAGCTGGGCCGGCGCCCGATGATCATCGGCGCGTGCGCGGCGTTATTCGCACTGGCCATCCCGTGCCTGTTGCTGATCGGCAGCGGCTCGGACGTGCTGATCTTCACCGGGTTGATGCTGCTTGGCCTGGCGCTGGTGTGTTTCACCAGCTCGATGCCTTCGACACTGCCGGCGCTGTTCTACACCCCGGTGCGCTACAGCGCGCTGTCGATCGCCTTCAACGTCTCAGTGTCGTTGTTTGGTGGCACCACGCCGTTGGTCACCGCGTGGCTGGTGGAGCGCACCGGCGACCCATTGGTGCCGGCGTATTACCTGATGGGCGCGGCGGCGATCGGCCTGGTGACGATGCTGTTCGTGCGCGAAACCGCCGGGCTGCCGCTGCGTGGCTCGCCGCCGGCAGTGGCCAGCGACGCCGAAGCGCGCGCGCTGCTGCAGGGCGACAGCCCGGTCACAGTGGATGCGCAGTTGCCGTTGAGCGGCACGCCGTCGATCGGTCAGCCGCGCCCGGCGTAA > 1183 PXO_02401 NA family_1_extracellular_solute-binding_protein YP_001915222.1 11 MMRPLWKKVLAAIVAAALLPIAASAQELTVMTSGGFTAAVERLAPQYTRQTGVKVTTLLGPSMGETPQAIPNRLARGEHADVVIMVGSALQKLIDTGLVAPASRVELADSRIGMVVRSGTPKPKIDSVEHFKQTLLHADSVAYSDSASGVYIETTLFKKLRIEGPMMAKSKKIPRIPVATVVADGSYQLGFQQVAELLPVAGVQFVGKIPEPLQSITRYAAGVPVNAEHPEAAKRLLAYLQSGDAQAVARVTGLDPASP gamma_subgroup Xanthomonas_oryzae_pv._oryzae_PXO99A Xanthomonas_oryzae_pv._oryzae_PXO99A NC_010717 4246364..4247641 Salzberg,S.L.,_Sommer,D.D.,_Schatz,M.C.,_Phillippy,A.M.,_Rabinowicz,P.D.,_Tsuge,S.,_Furutani,A.,_Ochiai,H.,_Delcher,A.L.,_Kelley,D.,_Madupu,R.,_Puiu,D.,_Radune,D.,_Shumway,M.,_Trapnell,C.,_Aparna,G.,_Jha,G.,_Pandey,A.,_Patil,P.B.,_Ishihara,H.,_Meyer,D.F.,_Szurek,B.,_Verdier,V.,_Koebnik,R.,_Dow,J.M.,_Ryan,R.P.,_Hirata,H.,_Tsuyumu,S.,_Won_Lee,S.,_Seo,Y.S.,_Sriariyanum,M.,_Ronald,P.C.,_Sonti,R.V.,_Van_Sluys,M.A.,_Leach,J.E.,_White,F.F._and_Bogdanove,A.J. NA 1274:>1278 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP000967.Source_DNA_and_isolate_are_available_from_Dr._Adam_Bogdanove,Department_of_Plant_Pathology,_Iowa_State_University,_Ames,_IA50011,_ajbog@iastate.edu.COMPLETENESS:_full_length. NA 07-DEC-2011 Xanthomonas_oryzae_pv._oryzae_PXO99A_chromosome,_complete_genome. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Xanthomonas_oryzae_B2SLP0_XANOP.gb Xanthomonas_Dowson_1939_(Approved_Lists_1980)_emend._van_den_Mooter_and_Swings_1990 188574270 BMC_Genomics_9,_204_(2008) NA NC_010717 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives 18452608 1278 NA genomic_DNA NA PXO99A NA Xanthomonas_oryzae_(ex_Ishiyama_1922)_Swings_et_al._1990_emend._van_den_Mooter_and_Swings_1990 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 360094 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Xanthomonas Genome_sequence_and_rapid_evolution_of_the_rice_pathogen_Xanthomonas_oryzae_pv._oryzae_PXO99A NA NC_010717.1 ATGGTGCTGAGGGTGACCTCGGGCAACTTCCTTGAGCAATTCGACTTCTTTTTATTCGGGTTCTACGCAACGCAGATTGCCGCGGCCTTCTTCCCGGCGAGCAACGAATTCGCGTCGTTGATGATGACCTTCGCTGTGTTTGGCGCGGGCTTTTTGATGCGGCCGCTGGGGGCGGTGATCCTGGGCGCCTACATCGACGATGTCGGGCGTCGCCAAGGCTTGATCGTCACCTTGGCGATCATGGCCAGCGGCACTGTCCTGGTCGTGCTGGTGCCAGGCTATGCGAGCATCGGCTTGTGGGCACCGGCACTGGTGCTGCTTGGCCGTTTGCTGCAGGGCTTCTCGGCCGGTGCCGAAATGGGCGGCGTATCGGTGTATCTGACTGAGATTGCGACGCCGGGTCGGCGCGGCTTCTACGCCAGTTGGCAATCGGCCAGCCAGCAGGTCGCCATCGTCGCTGCGGCAGCGATCGGGTTTGCGCTCAATCAGCTCATGGCACCGCAGGATCTGGCGCAATGGGGTTGGCGGATTCCGTTCGGCATCGGTTGCGTCATCATTCCTTTCATCTTCCTGCTGCGGCGAAGCCTGGAAGAGACTGCGGAGTTTGCGCAGCGCCGCCAGCCGGTCACCATGAAGCAGGTGATGCGTGGGCTGGCGAACAATGCCAGCATCGTGATTGCCGGCGGCTTGATGGTCGCGCTGACGACGACCGCGTTCTATCTGATCACCGTCTACGCACCGACGTTCGGCAAGACCGTGCTCAAACTCAGCACCGGCGATGCGTTGATCGTGACACTGCTGGTGGGCGTCTCCAATTTCATGTGGCTCCCCATCGGCGGCACGCTCAGCGACCGCTTCGGCCGCAAGCCGCTGCTGGTGACCATGTCGGTGATGTGCATCCTGACCGCCTACCCGGTGCTCGCGTTTCTTGCGGCCGCACCGAGCTTCGCGCATATGTTGCAAGCGCTGCTGTGGCTGTCCTTCATCTATGGCCTCTACAACGGCGCCATGATTCCGGCACTCACCGAACAGATGCCGGCGCATGTGCGGGTAGCAGGATTCTCGCTCGCCTACGGCTTGGCGACTGCGGTGTTTGGCGGCTTTACGCCGGTGATTTCCACCTGGCTGATCCATGTCACGGGCGACAAGGCGGCGCCCGGTTACTGGCTGATCTTCGCTTCGGTGTGCGCGCTGGCGGCGACATTGTTTTTATATCGCCGCCAAGGCAACCCAGCGACAGCGACCGGCCTGGATGCTGCTGCAGAAGCGCAAAAATGA > 1184 XfasoDRAFT_0026 NA General_substrate_transporter:Major_facilitator_superfamily EAO30258.1 11 MSDSLSPALSHYTAEEKRHRIFAIIAVSSGNLVEWFDFYVYAFTALYFSSQFFPESNQTAQLLNTAAIFGAGFLMRPIGGWLFGRIADRYGRKRSLLISVMMMCGGSMVIATLPTHHMIGAWAAFLLLLARLIQGLSVGGEYGSTATYMSEIALRGRRGFYSSFQYVTLIGGQLLAVLTLVVLEALFTEVQMRAWGWRIPFMIGAIAAAVALLLRRTLNETQSEDNRHDTHAGSLSTLFREHRTAFLTVFGYTAGGSLIFYTFTTYMQKFLVNSSGLSKQTASLVMSGALFVYMCIQPLFGLLSDYIGRRNNMLLFGGLGAVCTVPILATLQRIHSPLPAFILIVGALSIISFYTSISAIVKAEMFPAKVRALGVGFAYAVGNAIFGGSAEYIALGLKSFDLETVFFWYVAAMMAVVFLVSLRLPRQATYLHHDH gamma_subgroup Xylella_fastidiosa_subsp._sandyi_Ann-1 Xylella_fastidiosa_subsp._sandyi_Ann-1 AAAM03000157 1652..2959 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina,T.,_Hammon,N.,_Israni,S.,_Pitluck,S._and_Richardson,P. NA 0:1308 URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Sandy_Purcell(purcell@nature.berkeley.edu)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLContact:_Paul_Richardson:_(microbes@cuba.jgi-psf.org). NA 03-AUG-2005 Xylella_fastidiosa_subsp._sandyi_Ann-1_ctg_107,_whole_genome_shotgun_sequence. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Xylella_fastidiosa_Q3QZ47_XYLFA.gb Xylella_Wells_et_al._1987 71728046 Unpublished NA AAAM03000157 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives NA 1308 NA genomic_DNA NA Ann-1 NA Xylella_oleander NA forward NA NA NA NA NA NA Xylella_fastidiosa_subsp._sandyi NA NA NA prokaryotes NA 155920 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Xylella Sequencing_of_the_draft_genome_and_assembly_of_Xylella_fastiodiosa_Ann-1 NA AAAM03000157.1 ATGTCCGACAGCCTCTCCCCTGCACTTTCACACTACACAGCAGAGGAGAAGCGCCATCGCATTTTCGCGATCATCGCCGTTTCCTCCGGCAACTTAGTCGAATGGTTCGACTTTTACGTCTACGCATTCACCGCGCTGTATTTTTCCTCCCAGTTTTTCCCTGAGTCCAATCAAACCGCACAATTACTCAACACTGCCGCAATCTTTGGTGCAGGCTTCTTGATGCGGCCTATCGGCGGCTGGCTGTTCGGCCGGATTGCCGATCGCTACGGACGCAAACGCTCGTTATTGATCTCGGTAATGATGATGTGTGGCGGTTCAATGGTGATCGCCACGCTTCCTACCCATCATATGATCGGTGCCTGGGCGGCGTTTTTATTACTACTCGCACGTCTGATACAGGGTCTGTCGGTAGGTGGTGAGTACGGTTCTACCGCAACTTACATGAGTGAAATTGCGCTGCGTGGACGACGCGGCTTCTATTCCTCGTTCCAGTACGTCACGTTGATCGGCGGCCAGTTGCTGGCAGTGTTGACTCTGGTGGTGCTGGAAGCTTTATTCACTGAAGTTCAAATGCGCGCCTGGGGTTGGCGTATTCCATTCATGATCGGTGCGATTGCCGCAGCAGTTGCGTTATTACTACGCCGCACACTGAACGAAACTCAATCAGAGGATAACCGACATGACACCCATGCCGGTTCACTATCAACCCTGTTCCGCGAGCACCGCACTGCATTCCTAACCGTATTTGGATATACCGCTGGCGGCTCGCTGATTTTTTACACTTTCACCACCTATATGCAGAAGTTCCTAGTCAACAGTTCCGGCTTATCCAAACAGACTGCTAGTCTGGTGATGAGTGGCGCACTGTTTGTCTATATGTGCATTCAACCATTGTTCGGCCTACTGTCGGACTATATCGGGCGGCGCAACAACATGCTGCTATTTGGTGGGTTAGGTGCGGTCTGCACTGTACCGATCCTCGCAACATTACAGCGTATTCATTCACCACTACCCGCATTCATATTGATCGTAGGAGCGTTGTCGATTATCAGCTTCTACACCTCCATCTCCGCCATCGTGAAAGCCGAGATGTTCCCAGCAAAAGTACGTGCGCTAGGTGTGGGCTTCGCCTACGCAGTAGGTAACGCCATATTTGGTGGTTCAGCCGAATATATTGCCCTGGGACTGAAGAGCTTCGATCTAGAAACGGTGTTCTTCTGGTACGTGGCAGCAATGATGGCGGTCGTATTCTTGGTCAGTTTGCGCCTACCACGGCAAGCCACGTACCTGCATCATGACCATTAA > 1185 XfasoDRAFT_1654 NA alpha-ketoglutarate_permease_symporter EAO32326.1 11 MFFWYVAAMMAVVFLVSLRLPRQATYLHHDH gamma_subgroup Xylella_fastidiosa_subsp._sandyi_Ann-1 Xylella_fastidiosa_subsp._sandyi_Ann-1 AAAM03000034 31437..32738 Copeland,A.,_Lucas,S.,_Lapidus,A.,_Barry,K.,_Detter,J.C.,_Glavina,T.,_Hammon,N.,_Israni,S.,_Pitluck,S._and_Richardson,P. NA 1213:>1302 URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Sandy_Purcell(purcell@nature.berkeley.edu)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLContact:_Paul_Richardson:_(microbes@cuba.jgi-psf.org).URL_--_http://www.jgi.doe.govSource_DNA_and_bacteria_available_from_Sandy_Purcell(purcell@nature.berkeley.edu)Whole_genome_sequencing_and_draft_assembly_at_JGI-PGFAnnotation_by_JGI-ORNLContact:_Paul_Richardson:_(microbes@cuba.jgi-psf.org). NA 03-AUG-2005 Xylella_fastidiosa_subsp._sandyi_Ann-1_ctg_218,_whole_genome_shotgun_sequence. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Xylella_fastidiosa_Q3R4Y8_XYLFA.gb Xylella_Wells_et_al._1987 71730206 Unpublished NA AAAM03000034 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives NA 1302 NA genomic_DNA NA Ann-1 NA Xylella_oleander NA forward NA NA NA NA NA NA Xylella_fastidiosa_subsp._sandyi NA NA NA prokaryotes NA 155920 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Xylella Sequencing_of_the_draft_genome_and_assembly_of_Xylella_fastiodiosa_Ann-1 NA AAAM03000034.1 ATGTCCGACAGCCTCTCCCCTGCACTTTCACACTACACAGCAGAGGAGAAGCACCATCGCATTTTCGCGATCATCGCCGTTTCCTCCGGCAACTTAGTCGAATGGTTCGACTTTTACGTCTACGCATTCACCGCGCTGTATTTTTCCTCCCAGTTTTTCCCTGAGTCCAATCAAACCGCACAATTACTCAACACTGCCGCAATCTTTGGTGCAGGCTTCTTGATGCGACCTATCGGCGGCTGGCTGTTTGGCCGGATTGCCGATTGCTACGGACGCAAACGCTCGTTATTGATCTCGGTAATGATGATGTGTGGCGGTTCAATGGTGATCGCCACGCTTCCTACCCATCATATGATCGGTGCCTGGGCGGCGTTTTTATTGCTACTCGCATGTCTGATACAGGGTCTGTCGGTAGGTGGTGAGTACGGTTCTACCGCAACTTACATGAGTGAAATTGCGCTGCGTGGACGACGCGGCTTCTATTCCTCGTTCCAGTACGTCACGCTGATCGGCGGCCAGTTGCTGGCAGTGTTGACTCTGGTGGTGCTGGAAGCCTTATTCACTGAAGTTCAAATGCGCACCTGGGGTTGGCGTATTCCATTCATGATCGGTGCGATTGCAGCAGCAGTTGCGTTATTACTACGCCGCACACTGAACGAAACTCAATCAAAGGATAACCGACATGACACCCATGCCGGTTCGCTATCAACCCTGTTCCGCGAACACCACACCGCATTCCTAACCGTATTTGGATATACCGCTGGAGGCTCGCTGATTTTTTACACTTTCACCACCTATATACAGAAGTTCCTAGTCAACAGTTCTGGCTTATCCAAACAGACTGCCAGTCTGGTGATGAGTGGCGCACTGTTTGTCTATATGTGCATTCAACCATTGTTCGGCCTACTGTCGGACTATATCGGACGGCGCAACAACATGCTGCTATTTGGTGGGTTAGGTGTGGTCTGTACTGTACCGATCCTCGCAACATTACAGCGTATTCATTCACCACTACCCGCATTCATATTGATCGTAGGAGCGTTGTCGATTATCAGCTTCTACACCTCCATCTCCGCCATCGTGAAAGCCGAGATGTTCCCAGCAAAAGTACGTGCGCTAGGTGTGGGCTTCGCCTACGCAGTAGGTAACGCCATATTTGGTGGTTCGGCCGAATATATTGCCCTGGGACTGAAGGAGCTTCGATCTAGAAACGGTGTTCTTCTGGTACGTGGCAGCGATGATGGCGGTCGTATTCTTGGTCAGTTTGCGCCTACCACGGCAAGCCACGTACCTGCATCATGA > 1186 XF0087 similar_to_SP|P17448_(percent_identity:_64_%/query_alignment_coverage:_98.2_%/subject_alignment_coverage:_98.8_%);_identified_by_sequence_similarity;_ORF_located_using_Glimmer/RBSfinder alpha-ketoglutarate_permease NP_297380.1 11 MSDSLSPALSHYTAEEKRHRIFAIIAVSSGNLVEWFDFYVYAFTTLYFSSQFFPESNQTAQLLNTAAIFGAGFLMRPIGGWLFGRIADRYGRKRSLLISVMMMCGGSLMIATLPTHHMIGAWAPFLLLLARLIQGLSVGGEYGSTATYMSEIALRGRRGFYSSFQYVTLIGGQLLAVLTLVVLEALFTEVQMRTWGWRIPFMIGAIAAAVALLLRRTLSETQSEDNRHDTHAGSLSTLFREHRTAFLTVFGYTAGGSLIFYTFTTYMQKFLVNSSGLSKQTASLVMSGALFVYMCIQPLFGLLSDYIGRRNNMLLFGGLGAVCTVPILATLQRIHSPLPAFILIVGALSIISFYTSISAIVKAEMFPAKVRALGVGFAYAVGNAIFGGSAEYIALGLKSFDLETVFFWYVAAMMAVVFLVSLRLPRQATYLHHDH gamma_subgroup Xylella_fastidiosa_9a5c Xylella_fastidiosa_9a5c NC_002488 86989..88296 Meidanis,J.,_Braga,M.D._and_Verjovski-Almeida,S. NA 0:1308 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_AE003849.On_Jan_4,_2005_this_sequence_version_replaced_gi:55294525.COMPLETENESS:_full_length. NA 20-JAN-2012 Xylella_fastidiosa_9a5c_chromosome,_complete_genome. NA Xanthomonas_group /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Xylella_fastidiosa_Q9PH59_XYLFA.gb Xylella_Wells_et_al._1987 57014152 Microbiol._Mol._Biol._Rev._66_(2),_272-299_(2002) NA NC_002488 NA NA Xanthomonadales_Saddler_and_Bradbury_2005 purple_photosynthetic_bacteria_and_relatives 12040127 1308 NA genomic_DNA NA 9a5c NA Xylella_oleander NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 160492 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Xanthomonadales,_Xanthomonadaceae,_Xylella Whole-genome_analysis_of_transporters_in_the_plant_pathogen_Xylella_fastidiosa NA NC_002488.3 TTAATGGTCATGATGCAGGTACGTGGCTTGGCGTGGTAGGCGCAAACTGACCAAGAATACGACCGCCATCATCGCTGCCACGTACCAGAAGAACACCGTTTCTAGATCGAAGCTCTTCAGTCCCAGGGCAATATATTCGGCCGAACCACCAAATATGGCGTTACCTACTGCGTAGGCGAAGCCCACACCTAGCGCACGTACTTTTGCTGGGAACATCTCGGCTTTCACGATGGCGGAGATGGAGGTGTAGAAGCTGATAATCGACAACGCTCCTACGATCAATATGAATGCGGGTAGTGGTGAATGAATACGCTGTAATGTTGCGAGGATCGGTACAGTACAGACCGCACCTAACCCACCAAATAGCAGCATGTTGTTGCGCCGTCCGATATAGTCCGACAGTAGGCCGAACAATGGTTGAATGCACATATAGACAAACAGTGCGCCACTCATCACCAGACTGGCAGTCTGTTTGGATAAGCCGGAACTGTTGACTAGGAACTTCTGCATATAGGTGGTGAAAGTGTAAAAAATCAGCGAGCCTCCAGCGGTATATCCAAATACGGTTAGGAATGCGGTGCGGTGTTCGCGGAACAGGGTTGATAGCGAACCGGCATGGGTGTCATGTCGGTTATCCTCTGATTGAGTTTCGCTCAGTGTGCGGCGTAGTAATAACGCAACTGCTGCGGCAATCGCACCGATCATGAATGGAATACGCCAACCCCAGGTGCGCATTTGAACTTCAGTGAATAAGGCTTCCAGCACCACCAGAGTCAACACTGCCAGCAACTGGCCGCCGATCAGCGTGACGTACTGGAAGGAGGAATAGAAGCCGCGTCGTCCACGCAGCGCAATTTCACTCATGTAAGTTGCGGTAGAACCGTACTCACCACCTACCGATAGACCCTGTATCAGACGTGCGAGTAGCAATAAAAATGGCGCCCAGGCACCGATCATATGATGGGTAGGAAGCGTGGCGATCATCAGTGAACCGCCACACATCATCATTACCGAGATCAATAACGAGCGTTTGCGTCCGTAGCGATCGGCAATCCGGCCGAACAGCCAGCCCCCGATAGGTCGCATCAAGAAGCCTGCACCAAAGATTGCGGCAGTGTTGAGTAATTGTGCGGTTTGATTGGATTCAGGGAAAAACTGGGAGGAGAAATACAGCGTGGTGAATGCGTAGACGTAAAAATCGAACCATTCGACTAAGTTGCCGGAGGAAACGGCGATGATCGCGAAAATACGATGGCGCTTCTCCTCTGCGGTGTAGTGTGAAAGTGCAGGGGAGAGGCTGTCGGACAT > 1187 YALI0D00132g similar_to_uniprot|Q9P3B9_Neurospora_crassa_related_to_myo-inositol_permease YALI0D00132p XP_502227.1 NA MVFGREKDDSEGIEHVPSPQDNPSDQTSDIIALNEKASNEHDDLPTIPKPEGDAPVNSELDPDNPLIRYSRAELLEIATQFAVDNDLADKAEAFRKGALVAQDPSGFENIDILDDDDRYWLNREITNKWDHPMKVYYLVVCCSLAAAVQGMDETVINGANIIFPAQFGIKEDSGVVSRKSWLLGLVNSAPYLCCACISCWMTDPINKVLGRKWTVFWTCFWAGATCFWSGFVNTWWHLFIARFFLGFGIGPKSATVPVYAAECAPPRIRGAMVMMWQMWTAFGIMMGYVMDLAFYYVKDRGTIVGLNWRLMLGSALIPALLVCIFIVKCPESPRWHLARGEIRKSFECMREIRHTDIQAARDTFYAHVLLIEENEMKKGKNRFVELFTVPRNRRAAWASFIVMFMQQFCGINVIAYYSSNIFMESGFGAIQALLASFGFGAINFVFALPAVYTIDTFGRRALLLATFPLMAIFLLFAGFCFYIGQNDPTHSHARVGLIALGIYLFSAVYSCGEGPVPFTYSAEAFPLYVRDLGMSFATAVCWLFNFVLAVTWPSLLAAFTPQGAFGWYAAWNVVGFFLVLCFLPETKNLTLEELDKVFSVPTRVHMKYQFNAFKINIQRTILRKDVPKPPPLYAHEAGIGGTSHWSSKPQPNANTAEFV Saccharomycetes Yarrowia_lipolytica_CLIB122 Yarrowia_lipolytica_CLIB122 XM_502227 NA Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1980 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_006070).COMPLETENESS:_incomplete_on_both_ends. NA 29-OCT-2008 Yarrowia_lipolytica_YALI0D00132p_(YALI0D00132g)_mRNA,_complete_cds. NA Dipodascaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Yarrowia_lipolytica_Q6CAT5_YARLI.gb Yarrowia 50549512 Nature_430_(6995),_35-44_(2004) fungi XM_502227 NA NA budding_yeasts sac_fungi 15229592 1980 D mRNA NA CLIB122 NA Yarrowia_lipolytica NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 284591 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Dipodascaceae,_Yarrowia Genome_evolution_in_yeasts NA XM_502227.1 ATGGTTTTTGGACGAGAAAAAGACGACTCTGAGGGTATCGAACATGTGCCCTCCCCCCAAGACAACCCGTCAGATCAGACGTCAGACATCATCGCTCTGAACGAGAAGGCTTCTAATGAACATGATGATCTCCCCACTATCCCCAAACCCGAGGGAGATGCCCCAGTCAACTCTGAACTGGACCCCGACAATCCGCTGATTCGATACAGTCGCGCTGAGCTCCTCGAGATTGCCACCCAGTTTGCGGTGGATAACGACCTTGCCGACAAAGCGGAAGCATTCAGAAAGGGCGCCCTAGTGGCCCAAGACCCTTCCGGTTTCGAGAACATCGACATACTTGATGACGACGACAGATACTGGCTTAACCGTGAGATCACCAATAAGTGGGATCATCCCATGAAGGTTTACTACCTTGTTGTGTGCTGCTCCTTGGCTGCTGCTGTCCAGGGTATGGATGAGACTGTTATCAACGGCGCCAACATCATTTTCCCTGCTCAGTTTGGTATCAAGGAGGATTCCGGTGTTGTGTCTCGAAAGAGTTGGCTGCTTGGTCTTGTCAACTCTGCTCCTTATTTGTGTTGTGCATGCATCTCGTGCTGGATGACTGACCCTATCAACAAAGTACTTGGCCGAAAATGGACAGTGTTCTGGACCTGTTTCTGGGCCGGAGCCACCTGTTTCTGGTCTGGTTTCGTCAACACCTGGTGGCATCTGTTTATTGCCCGGTTCTTCCTGGGATTCGGTATTGGTCCCAAGTCCGCCACAGTTCCCGTGTACGCTGCCGAGTGTGCTCCTCCCAGGATTCGAGGTGCCATGGTTATGATGTGGCAGATGTGGACTGCTTTTGGTATCATGATGGGCTATGTTATGGATCTTGCATTCTACTACGTCAAGGATAGAGGAACTATTGTCGGCCTAAATTGGAGACTGATGCTTGGTTCTGCTTTGATTCCTGCTCTTCTGGTCTGTATTTTTATTGTCAAATGTCCTGAGTCTCCCAGATGGCACCTCGCTCGAGGAGAGATCCGAAAGTCGTTTGAGTGCATGCGAGAAATTCGACACACTGACATACAAGCCGCTCGAGATACCTTCTACGCCCACGTTCTTCTGATCGAAGAGAACGAGATGAAGAAAGGAAAGAACCGATTTGTGGAGCTCTTTACCGTTCCTCGAAACCGGCGAGCAGCCTGGGCTTCTTTCATTGTCATGTTCATGCAGCAGTTCTGTGGTATCAATGTTATTGCCTACTACTCCTCCAACATTTTCATGGAGTCTGGTTTTGGTGCTATCCAAGCTCTTCTGGCTTCGTTTGGTTTTGGTGCTATCAACTTTGTGTTTGCGTTGCCAGCTGTTTACACTATCGACACATTTGGTAGACGGGCACTATTACTGGCGACCTTCCCTCTGATGGCTATATTCTTGCTATTTGCTGGTTTCTGTTTCTACATTGGCCAGAACGATCCCACCCACTCTCATGCTCGTGTCGGTTTAATTGCTCTAGGTATCTATCTCTTCTCAGCAGTTTACTCCTGTGGAGAAGGTCCAGTGCCCTTCACCTACTCGGCTGAAGCCTTCCCTTTGTACGTTCGAGATTTGGGTATGTCGTTTGCCACCGCCGTTTGCTGGCTCTTTAATTTTGTTCTAGCCGTCACGTGGCCCTCTCTCCTGGCAGCCTTCACTCCGCAGGGTGCCTTCGGATGGTATGCTGCGTGGAATGTTGTCGGATTCTTCTTGGTCCTGTGTTTCTTGCCCGAGACCAAGAACCTGACTCTGGAAGAGCTTGACAAGGTCTTCAGTGTCCCCACCCGAGTCCACATGAAGTACCAGTTCAACGCCTTCAAAATCAACATTCAGCGAACAATATTACGAAAGGATGTGCCCAAGCCTCCTCCGCTCTATGCCCACGAAGCCGGTATTGGTGGTACTTCTCACTGGAGCTCCAAGCCTCAGCCCAACGCGAACACTGCCGAGTTCGTTTAA > 1188 YALI0C16522g similar_to_uniprot|P39932_Saccharomyces_cerevisiae_YDR536w_STL1_member_of_the_sugar_permease_family_P33.1.f24._1 YALI0C16522p XP_501907.1 NA MKLQVPAFARSSSDVKTSFMGARGQKLHNLVAAIAGLGFLLFGYDQGVMGGLLTLDTFIQQFPKMDTSDYLPPKVKTFNTTIQGTAVGIYEIGCMIGALFTMWAGDKLGRRYMIFFGSIIMTIGAILQCASYSLGQFIAGRVISGIGNGFITATVPMLQSECAKPERRGKLVMLEGALITAGIALSYWIDFGFYWVRTNDADWRFPIAFQIVFSLVLTFTIMSLPESPRWLVKKQRFEEAAGVFAALEDVPLDDPYVINQITSVKESIMMEQLAQLGVDGVDARRKIQSGEFQMGQELSFIGQMKLMFTFGKKKNFHRTMLAYWNQVMQQVTGINLITYYAAYIYQTSVGMNATDSRILAACNGTEYFMASWVAFYTIERFGRRKLMLFGAVGQACTMAILTGCVYAASKPEDGGLDMQGAGIAAAVFLFVFNTFFAIGWLGMTWLYPAEISSLEIRAPANGLSTSGNWAFNFMVVMITPVAFNSIKWKTYIIFACINAFMVPMVYFFYPETAGRSLEEIDMIFAESNPRTPWDVVGIANRLPKNSVATYDDYEAGEQEEKAIVETAESVSHDSAEFQ Saccharomycetes Yarrowia_lipolytica_CLIB122 Yarrowia_lipolytica_CLIB122 XM_501907 NA Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1737 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_006069).COMPLETENESS:_incomplete_on_both_ends. NA 29-OCT-2008 Yarrowia_lipolytica_YALI0C16522p_(YALI0C16522g)_mRNA,_complete_cds. NA Dipodascaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Yarrowia_lipolytica_Q6CBQ5_YARLI.gb Yarrowia 50548874 Nature_430_(6995),_35-44_(2004) fungi XM_501907 NA NA budding_yeasts sac_fungi 15229592 1737 C mRNA NA CLIB122 NA Yarrowia_lipolytica NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 284591 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Dipodascaceae,_Yarrowia Genome_evolution_in_yeasts NA XM_501907.1 ATGAAGCTACAAGTACCCGCGTTTGCGCGGTCGTCTTCTGACGTGAAAACGTCATTCATGGGAGCCCGGGGCCAGAAACTGCACAATCTCGTGGCAGCAATTGCAGGATTGGGATTCTTGCTGTTTGGATACGACCAGGGAGTTATGGGCGGTCTTCTAACTCTCGACACGTTCATCCAACAGTTTCCCAAAATGGACACCTCCGACTACCTGCCTCCAAAGGTCAAGACCTTCAACACCACCATTCAAGGCACAGCCGTGGGCATCTACGAAATCGGATGCATGATTGGAGCTCTGTTCACCATGTGGGCTGGAGACAAGCTTGGAAGACGCTACATGATCTTCTTTGGCTCCATCATCATGACGATTGGAGCGATTCTGCAATGTGCTTCCTACTCTCTGGGACAGTTCATTGCCGGAAGAGTCATTTCTGGAATTGGAAACGGCTTCATCACAGCCACAGTCCCCATGCTCCAGTCGGAATGCGCCAAACCCGAACGTCGAGGAAAGTTGGTCATGCTGGAGGGAGCTCTCATCACCGCTGGAATTGCTCTTTCGTATTGGATCGACTTTGGCTTCTATTGGGTGCGGACCAACGACGCCGACTGGCGTTTCCCTATCGCCTTCCAGATTGTCTTCTCTCTGGTTCTCACCTTCACCATCATGTCTCTTCCCGAGTCTCCCCGATGGCTCGTGAAGAAACAGAGATTCGAAGAAGCGGCAGGAGTTTTTGCTGCTCTCGAGGATGTGCCTCTGGACGACCCCTACGTGATTAACCAGATCACCTCCGTCAAAGAATCGATCATGATGGAGCAGCTGGCCCAGTTGGGTGTCGATGGTGTCGATGCTCGGCGGAAAATCCAGTCGGGCGAGTTCCAAATGGGCCAGGAGCTGTCTTTCATCGGTCAAATGAAACTCATGTTCACCTTTGGCAAAAAGAAAAACTTCCACCGAACAATGCTGGCCTACTGGAACCAGGTGATGCAGCAGGTGACCGGCATCAACCTCATCACCTACTACGCAGCTTACATTTACCAAACCAGCGTGGGAATGAATGCCACAGACTCGCGAATTCTGGCCGCCTGCAACGGAACAGAGTACTTTATGGCTTCCTGGGTCGCCTTCTACACAATTGAGCGATTTGGACGCCGAAAACTCATGCTGTTTGGAGCCGTAGGCCAAGCATGCACTATGGCCATTCTCACCGGATGTGTTTACGCAGCTTCAAAGCCCGAAGATGGAGGCTTGGACATGCAGGGGGCGGGAATCGCTGCGGCCGTCTTTCTGTTTGTGTTCAACACTTTCTTCGCCATTGGCTGGCTCGGTATGACCTGGCTCTACCCTGCGGAAATCTCGTCTTTGGAGATCAGAGCTCCGGCAAACGGTCTTTCCACCTCGGGCAACTGGGCCTTCAACTTCATGGTGGTAATGATCACCCCCGTGGCTTTCAACTCCATCAAGTGGAAGACGTATATCATTTTTGCCTGCATCAACGCCTTCATGGTCCCCATGGTGTACTTTTTCTACCCCGAGACCGCCGGACGAAGCTTGGAAGAGATTGATATGATCTTTGCCGAGTCCAACCCTCGAACTCCCTGGGACGTGGTTGGTATTGCCAACCGTCTGCCCAAGAACTCCGTGGCAACTTATGATGACTACGAGGCTGGTGAACAGGAGGAGAAGGCCATTGTTGAGACAGCGGAAAGTGTCTCTCATGATTCGGCCGAGTTTCAGTGA > 1189 YALI0B17138g similar_to_uniprot|Q9P702_Neurospora_crassa_Probable_sugar_transporter YALI0B17138p XP_501003.1 NA MKDFLAFTKASTEVKTVFFGCRGTPLHRVVAAIAGIGFLLFGYDQGVMGGLLTLPTFIQEFPSMDTSDHLPPDVKTHNTTIQGTAVGIYEIGCMLGALFTMWAGDKLGRRYMIFWGSIIITIGAILQCAAYSLAQFIVGRVIAGIGNGFITATVPMLQAECARPERRGALVMLEGALVTGGIALSYWIDFGFYFVKTNDADWRFPVAFQCVFSMFLTFTVMSLPESPRWLVKKGRYEEAAGVFAALEDVALDDPYVIDQVTRVKESIIMGQLAQHGIEGEEAQRKMAAGECQMGDELPFWQQIKLLFTFGKKKHFHRTMLAYWIQVMHQVSGINLITYYAAYIYQTSIGMNAMNSRILAACNGTEYFLASWVAFYTIERFGRRKLMLFGTIGQACTMAILTGCVYASSTPADGGLGNEGAGIAAAVFLFVFNSFFAIGWLGMSWLYPAEITSLEVRAPANGLATSGNWVFNFMVVMVTPVAFNSIKWRTYIIFACINAAMIPTIYFMYPETMGKSLEDIDMIFALSNPKTPWDVVGISRRMPSSIDNASPAPIILEKPSQENLEYAPSMSEGTINSVRIETA Saccharomycetes Yarrowia_lipolytica_CLIB122 Yarrowia_lipolytica_CLIB122 XM_501003 NA Dujon,B.,_Sherman,D.,_Fischer,G.,_Durrens,P.,_Casaregola,S.,_Lafontaine,I.,_De_Montigny,J.,_Marck,C.,_Neuveglise,C.,_Talla,E.,_Goffard,N.,_Frangeul,L.,_Aigle,M.,_Anthouard,V.,_Babour,A.,_Barbe,V.,_Barnay,S.,_Blanchin,S.,_Beckerich,J.M.,_Beyne,E.,_Bleykasten,C.,_Boisrame,A.,_Boyer,J.,_Cattolico,L.,_Confanioleri,F.,_De_Daruvar,A.,_Despons,L.,_Fabre,E.,_Fairhead,C.,_Ferry-Dumazet,H.,_Groppi,A.,_Hantraye,F.,_Hennequin,C.,_Jauniaux,N.,_Joyet,P.,_Kachouri,R.,_Kerrest,A.,_Koszul,R.,_Lemaire,M.,_Lesur,I.,_Ma,L.,_Muller,H.,_Nicaud,J.M.,_Nikolski,M.,_Oztas,S.,_Ozier-Kalogeropoulos,O.,_Pellenz,S.,_Potier,S.,_Richard,G.F.,_Straub,M.L.,_Suleau,A.,_Swennen,D.,_Tekaia,F.,_Wesolowski-Louvel,M.,_Westhof,E.,_Wirth,B.,_Zeniou-Meyer,M.,_Zivanovic,I.,_Bolotin-Fukuhara,M.,_Thierry,A.,_Bouchier,C.,_Caudron,B.,_Scarpelli,C.,_Gaillardin,C.,_Weissenbach,J.,_Wincker,P._and_Souciet,J.L. NA 0:1749 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_006068).COMPLETENESS:_incomplete_on_both_ends. NA 29-OCT-2008 Yarrowia_lipolytica_YALI0B17138p_(YALI0B17138g)_mRNA,_complete_cds. NA Dipodascaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Yarrowia_lipolytica_Q6CEA9_YARLI.gb Yarrowia 50547066 Nature_430_(6995),_35-44_(2004) fungi XM_501003 NA NA budding_yeasts sac_fungi 15229592 1749 B mRNA NA CLIB122 NA Yarrowia_lipolytica NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 284591 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Dipodascaceae,_Yarrowia Genome_evolution_in_yeasts NA XM_501003.1 ATGAAAGACTTCCTCGCCTTCACCAAGGCTTCTACGGAGGTCAAGACCGTCTTCTTCGGATGCCGAGGAACTCCACTACATCGAGTGGTTGCGGCTATTGCTGGAATTGGCTTCCTGCTGTTTGGTTACGACCAAGGAGTAATGGGAGGTCTCCTCACTCTTCCTACTTTTATCCAGGAGTTCCCTAGCATGGACACTTCTGACCATCTTCCTCCTGACGTCAAGACTCATAACACAACCATCCAGGGCACAGCTGTGGGCATCTATGAGATTGGATGCATGCTTGGAGCATTGTTTACAATGTGGGCTGGCGATAAACTTGGTCGACGGTACATGATCTTCTGGGGTTCCATCATCATCACCATTGGTGCCATTCTCCAGTGTGCAGCTTACAGTCTGGCCCAGTTTATTGTTGGCAGAGTCATTGCCGGTATCGGAAACGGCTTTATCACTGCCACTGTCCCCATGCTTCAAGCTGAGTGTGCTAGACCCGAACGTCGAGGAGCTCTGGTCATGCTCGAAGGAGCTCTGGTTACAGGAGGCATTGCTCTCTCGTACTGGATTGACTTTGGCTTCTACTTTGTCAAGACCAATGACGCCGACTGGCGATTTCCCGTAGCATTCCAGTGTGTCTTCTCTATGTTCCTCACTTTCACTGTCATGTCTCTTCCTGAATCACCTAGATGGCTGGTCAAGAAGGGACGTTACGAAGAAGCCGCGGGGGTTTTTGCAGCTTTGGAAGACGTGGCACTTGACGATCCTTACGTAATTGACCAGGTCACTAGAGTGAAAGAGTCCATCATCATGGGACAACTTGCTCAGCATGGTATCGAAGGTGAAGAGGCGCAGCGAAAGATGGCCGCGGGTGAATGTCAAATGGGAGACGAACTGCCATTCTGGCAGCAAATCAAATTGCTCTTCACATTTGGAAAGAAGAAACATTTCCATCGAACCATGTTGGCTTACTGGATTCAGGTCATGCACCAGGTCTCAGGTATCAACCTCATCACTTACTACGCAGCTTATATTTACCAGACATCCATTGGTATGAACGCCATGAACTCGAGAATTCTGGCAGCTTGCAACGGAACAGAATACTTTTTGGCCTCTTGGGTGGCCTTCTACACAATTGAGAGATTTGGACGAAGAAAACTCATGTTGTTTGGAACCATCGGACAAGCATGTACAATGGCTATCTTGACAGGCTGCGTGTACGCCTCTTCAACTCCAGCGGACGGAGGTCTCGGAAATGAAGGCGCCGGAATTGCCGCAGCAGTCTTTCTGTTTGTGTTCAACTCTTTCTTTGCTATTGGATGGCTGGGTATGTCATGGTTGTACCCTGCCGAAATCACCTCCCTTGAAGTTCGGGCTCCCGCCAACGGTCTAGCGACCTCTGGAAACTGGGTCTTCAACTTCATGGTGGTCATGGTTACCCCCGTGGCCTTCAACTCCATCAAATGGAGGACATACATCATCTTTGCTTGTATCAACGCTGCTATGATCCCTACCATCTATTTCATGTATCCTGAAACCATGGGCAAGTCTCTGGAAGATATCGACATGATTTTCGCTCTGTCCAACCCGAAGACCCCCTGGGATGTGGTGGGTATCTCGCGGCGAATGCCTAGCAGTATCGACAACGCTTCTCCTGCTCCAATAATTCTCGAGAAGCCTTCACAGGAAAATCTCGAATACGCTCCTTCAATGAGCGAAGGTACTATTAACAGCGTTCGAATCGAGACAGCGTAG > 1190 ykris0001_25540 similar_to_proline/glycine_betaine_transporter_PRK10642;_similar_to_Proline/betaine_transporter_of_Proteobacteria_UniRef_RepID=PROP_SALTY Proline/betaine_transporter EEP92047.1 11 MQINDITIIDDTKLKKAITAAALGNAMEWFDFGVYGFVAFALGQVFFPGADPGIQMIAALATFSVPFLVRPLGGIFFGALGDKYGRQKVLSVTIIIMSVSTFCIGLIPSYASIGIWAPILLLLAKLAQGFSVGGEYTGAAIFVAEYSPDRKRGFLGSWLDFGSIAGFVLGAGVVLLISSIVGEASFLEWGWRIPFFVAAPLGLIGIYLRHALEETPTFQQHVDKIDNDSRHNIAQPPKVSFREILTKQWKNLTICVGMVIATNVTYYMLLTYMPSYLSHSLHYSEDHGVLIIIAIMLGMLFVQPVMGLMSDRFGRKPFVICGSIGLFVLAIPSFILINSGIIGLIFCGLLILAILLNCFTGVMASILPAMFPTHIRYSALAIAFNISVLVAGLTPTVAAWLVETTQNLFMPAYYLMVVAVIGLVTGVFMKETANMPLKGATPAASDRAEAKELLQEHHDHIEQNIEDIDQQIAELEKKRKNLIAQHPDIN gamma_subgroup Yersinia_kristensenii_ATCC_33638 Yersinia_kristensenii_ATCC_33638 ACCA01000007 6306..7778 Read,T.D.,_Akmal,A.,_Bishop-Lilly,K.,_Chen,P.E.,_Cook,C.,_Kiley,M.P.,_Lentz,S.,_Mateczun,A.,_Nagarajan,N.,_Nolan,N.,_Osborne,B.I.,_Pop,M.,_Sozhamannan,S.,_Stewart,A.C.,_Sulakvelidze,A.,_Thomason,B.,_Willner,K._and_Zwick,M.E. NA 0:1473 Genome_coverage:_30.7X. NA 01-JUN-2009 Yersinia_kristensenii_ATCC_33638_contig00394,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Yersinia_kristensenii_C4TU65_YERKR.gb Yersinia_van_Loghem_1944 238699296 Unpublished NA ACCA01000007 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1473 NA genomic_DNA 527012 ATCC_33638 NA Yersinia_kristensenii_Bercovier_et_al._1981 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 527012 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Yersinia Annotation_of_the_Yersinia_kristensenii_ATCC_33638_genome NA ACCA01000007.1 TTAATTAATATCAGGGTGTTGAGCAATCAAGTTCTTTCTCTTTTTCTCAAGCTCGGCAATTTGCTGATCAATATCTTCAATATTCTGTTCGATGTGATCATGGTGTTCCTGCAATAACTCTTTGGCTTCGGCTCTATCTGAAGCTGCTGGTGTTGCTCCTTTCAGCGGCATATTCGCCGTTTCCTTCATAAATACCCCAGTCACCAAGCCAATAACCGCCACCACCATCAAATAATAAGCTGGCATAAATAGATTTTGCGTGGTTTCAACCAGCCACGCAGCAACTGTTGGTGTCAAGCCGGCAACCAATACCGAGATATTAAAGGCGATAGCTAATGCGCTGTAGCGAATATGGGTTGGGAACATTGCCGGTAATATGGATGCCATCACACCGGTAAAACAGTTAAGTAAAATGGCCAGAATCAACAAACCACAAAATATCAAACCGATAATGCCGCTGTTAATCAGGATAAAACTAGGAATGGCAAGAACAAACAACCCAATGCTGCCACAAATAACAAAGGGTTTACGGCCAAACCGGTCGCTCATTAATCCCATAACTGGCTGAACAAATAACATGCCGAGCATAATAGCGATAATTATCAATACACCATGATCTTCAGAATAATGCAGGCTGTGAGACAGATAGCTCGGCATATAGGTCAATAGCATGTAATAAGTGACGTTAGTCGCAATCACCATGCCGACACATATAGTCAGATTCTTCCATTGCTTGGTTAATATTTCGCGGAAAGAGACCTTGGGTGGCTGAGCAATATTATGGCGCGAATCATTATCAATTTTATCGACGTGCTGCTGGAAAGTCGGCGTTTCTTCAAGCGCATGGCGCAAATAGATACCAATCAACCCCAATGGGGCCGCCACAAAGAATGGGATACGCCATCCCCATTCAAGAAAACTGGCTTCGCCCACAATACTGGAAATAAGTAGCACCACCCCAGCGCCGAGAACAAAACCGGCAATAGAACCAAAATCCAGCCAACTGCCGAGGAAACCCCGTTTTCTGTCCGGTGAGTACTCAGCAACAAAAATAGCCGCGCCGGTATATTCGCCGCCGACAGAAAAGCCCTGTGCCAATTTGGCTAATAACAGCAATATGGGTGCCCAAATACCAATCGAAGCATAGGATGGGATCAACCCAATACAGAATGTACTGACCGACATAATAATGATGGTGACGGACAAAACTTTTTGCCGCCCATACTTATCACCCAGAGCACCAAAGAATATCCCGCCCAGGGGCCGAACCAAGAAAGGAACGGAAAAGGTCGCCAGTGCGGCGATCATCTGAATGCCGGGGTCAGCGCCGGGGAAAAATACCTGACCCAAGGCGAATGCGACGAAACCATACACACCAAAATCGAACCACTCCATGGCGTTGCCCAACGCCGCTGCGGTGATAGCTTTCTTCAATTTGGTGTCATCAATGATAGTAATATCATTGATTTGCAT > 1191 ymoll0001_23420 similar_to_drug_efflux_system_protein_MdtG_PRK09874;_similar_to_Multidrug_resistance_protein_mdtG_of_Bacteria_UniRef_RepID=MDTG_ECOHS Multidrug_resistance_protein_mdtG EEQ11953.1 11 MPFLPLYVEELGVSGHQSLNMWSGLVFSITFLFSAIAAPFWGSLADRKGRKVMLLRSALGMGIVMVLMGMAQNIWQFLALRALLGLLGGFIPNANALIATQVPRSRSGWALGTLSTGGVSGALIGPLIGGLLADNYGLRPVFFITAGVLFLCFAMTWLYVREQFSPVLKKDMLNGRQVFNSLKNPKLILSLFITTMIIQVATGSIAPILTLYVRELAGDIHNLAFVSGMIASVPGVAALMSAPRLGKLGDRIGPERILIAMLALSVLILIPMAFVQTPLQLGILRFLLGATDGALLPAVQTLLIYNCTNQVAGRIFSYNQSFRDVGNVSGPLLGAAVSASYGFRAVFCVTAAVVLFNALYSYWCLQRHPAKPRQHDVQQTQDR gamma_subgroup Yersinia_mollaretii_ATCC_43969 Yersinia_mollaretii_ATCC_43969 AALD02000004 47817..48968 Read,T.D.,_Akmal,A.,_Bishop-Lilly,K.,_Chen,P.E.,_Cook,C.,_Kiley,M.P.,_Lentz,S.,_Mateczun,A.,_Nagarajan,N.,_Nolan,N.,_Osborne,B.I.,_Pop,M.,_Sozhamannan,S.,_Stewart,A.C.,_Sulakvelidze,A.,_Thomason,B.,_Willner,K._and_Zwick,M.E. NA 0:1152 Genome_coverage:_41.0X. NA 01-JUN-2009 Yersinia_mollaretii_ATCC_43969_contig01584,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Yersinia_mollaretii_C4S8W1_YERMO.gb Yersinia_van_Loghem_1944 238720113 Unpublished NA AALD02000004 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1152 NA genomic_DNA 349967 ATCC_43969 NA Yersinia_mollaretii_Wauters_et_al._1988 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 349967 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Yersinia Annotation_of_the_Yersinia_mollaretii_ATCC_43969_genome NA AALD02000004.1 TTATCTGTCTTGCGTTTGTTGAACATCGTGCTGCCGTGGTTTTGCCGGATGGCGCTGTAAACACCAGTAGGAGTAAAGGGCATTAAACAGCACCACGGCGGCTGTGACGCAGAAGACAGCGCGGAAGCCGTAACTGGCGGAGACCGCCGCTCCAAGCAGCGGGCCACTGACATTACCGACATCACGAAACGACTGGTTATAGCTGAAAATTCGGCCTGCCACCTGATTGGTGCAGTTATAAATCAATAGTGTTTGCACCGCAGGCAGTAGCGCGCCATCCGTCGCCCCCAATAAAAAGCGCAGAATGCCCAGTTGCAACGGGGTCTGAACAAAGGCCATCGGAATCAGTATCAGCACTGAGAGTGCCAACATGGCAATCAGAATGCGCTCTGGGCCGATTCTATCCCCCAGCTTGCCTAATCGCGGGGCACTCATCAGCGCCGCGACCCCCGGTACTGAGGCAATCATGCCACTGACAAAGGCCAAATTATGAATGTCACCCGCCAACTCGCGCACATAGAGTGTCAGGATCGGGGCAATGGAGCCAGTTGCCACCTGAATGATCATGGTGGTGATAAACAGGCTGAGGATTAACTTAGGGTTTTTCAGCGAGTTAAACACTTGCCGCCCATTCAGCATATCTTTCTTCAGCACGGGGGAAAATTGCTCTCTGACATACAACCAAGTCATCGCAAAGCAGAGAAACAGCACCCCTGCGGTAATAAAGAACACCGGGCGCAAGCCATAGTTATCTGCCAGCAGGCCGCCAATCAGTGGCCCAATTAGCGCGCCACTGACCCCACCGGTGGAGAGGGTGCCCAATGCCCAGCCGCTTCGGCTGCGCGGCACTTGCGTGGCAATCAGCGCATTGGCATTCGGAATAAAGCCCCCCAGCAAGCCCAGCAGTGCGCGTAATGCTAGAAATTGCCAGATATTTTGCGCCATCCCCATCAACACCATCACAATCCCCATACCCAATGCGGAGCGCAACAGCATCACTTTGCGGCCTTTGCGATCAGCAAGGCTCCCCCAGAAAGGGGCGGCGATAGCCGAAAATAAGAAGGTGATACTGAACACCAACCCAGACCACATGTTCAGTGATTGGTGACCGCTCACACCTAGCTCCTCCACATAGAGTGGCAGGAAGGGCAT > 1192 YpMG051020_0116 identified_by_match_to_protein_family_HMM_PF00083;_match_to_protein_family_HMM_PF07690 transporter,_major_facilitator_family EDR55851.1 11 MQTLPSEKIRMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIQLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYSVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWLMGKGREDDAMAIVHKYFGPNVTLIDEEPATSTRRFLSLFGRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN gamma_subgroup Yersinia_pestis_biovar_Orientalis_str._MG05-1020 Yersinia_pestis_biovar_Orientalis_str._MG05-1020 AAYS01000011 127959..129317 Ravel,J.,_Eppinger,M.,_Rosovitz,M.,_Lindler,L.E.,_Bearden,S._and_Shriefer,M. NA 0:1359 Annotation_was_updated_on_the_contigs_in_March_2010. NA 01-MAR-2010 Yersinia_pestis_biovar_Orientalis_str._MG05-1020_gcontig_1104434254458,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Yersinia_pestis_B0GY18_YERPE.gb Yersinia_van_Loghem_1944 134119306 Unpublished NA AAYS01000011 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1359 NA genomic_DNA NA MG05-1020 NA Yersinia_pseudotuberculosis_subsp._pestis_(Lehmann_and_Neumann_1896)_Bercovier_et_al._1981 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes NA 404217 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Yersinia Yersinia_pestis_Strain_MG05-1020_project_at_JCVI/TIGR NA AAYS01000011.1 TCAGTTTGGAATAATGCTGGACGGTGGGCGTGGTGTGGTTGCTGATTGTGAGGCATCAACGAGGGTGAGTCCTTTCGTTTCCGGTGCCCAAGCGATAGAAACGATGGCTCCAATAATTAAAACGAATGCCAAGAGGGTGGTGGTTACGGGCATTCCATAATTGACAATGGCTAATGGCAGCAGGCTGGTACCAATAGCTGATCCCAAGCGACTCATGGAAGTCGCAAATCCCACCCCCATTGAGCGTACTTCGGTCGGGAAACTCTCGGCCGGGAACACACCGACTAGGTTACTGACGGCAGACATCACAAGAGTAAAAGCCGCGAAGAGTGCAATCAGCCAAAATGTTTGATTGGAAGGCAGTATGCTCAGCAAGAGTAGGCAGGTAGCCAGGAAAATAAAGGAAGAGATCAGGAAGCTACGGCGCGAGCAGAATGCAGTCAGGACAATACCGACTAAAGCACCCACCACGAGCAAGCCGTTCAATAACAAGTCGGTAGCAAAATTCTGGCTCAACGCCATCACGTTAAGAATCGAGGGTAAAAAGGTATAGATCGCGAAGTAGGGGATCACCAGACAAACAAAAAATAAGCTATTAAAAGCGGTACGTCGCCAGTATTTACGGCCAAATAAAGACAGAAAACGGCGGGTGGAAGTCGCGGGTTCCTCATCAATCAACGTTACGTTCGGGCCAAAGTACTTATGCACAATGGCCATGGCATCGTCCTCACGACCTTTTCCCATTAGCCAGCGCGGTGACTCCGGCGTACCAATCCGTACAAGGAGAATAAGTAAAGCGGGCAGGGCGGCAGAAGATAACAACCAACGCCAAGCCTCGGGGCTGACCATACTCAGATAATGTCCAACGAAACTGGCACTCACATAGCCAAAGGTCCAAATGACACTGAATGCGCCCAATAAGACCCCGCGATGTTTTCGTGGTGAAAATTCAGCTAATAAAGTATGTCCCACCGAGTAATCGCCACCGATACCAATACCAACGATGACCCGCAAAATAAATAACTGTTCTGGTGTACTGGCAAAAAATTGCAGTGCTGAGGCTAAGGTAATGATGACAAAACTGAAACTGAAAATTTTCTGGCGGCCAATGTAATCTGAGATCCAGCCTAATATTAGGCTGCCTAGAAATAGCCCGATCAGCGCGGCTGATCCGAGTAATCCCTCCCATAATGGTGTAAGTGCCATTATGGGTTTGAGTTGAATTAATGCAAAGCCAATCAGACCTAAGATATAGCCATCGATAAAGTGTGCGCCAAAAGTTAGCCCGGCAATTCTTATATGGAAGCGATTTAGGGGGACATCGTCCATCCTGATTTTTTCTGATGGTAATGTTTGCAT > 1193 YPTS_2596 PFAM:_General_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_ypp:YPDSF_1874_transporter_protein general_substrate_transporter YP_001873013.1 11 MQTLPSEKIRMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIQLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYSVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWLMGKGREDDAMTIVHKYFGPNVTLIDEEPATSTRRFLSLFGRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN gamma_subgroup Yersinia_pseudotuberculosis_PB1/+ Yersinia_pseudotuberculosis_PB1/+ NC_010634 2871161..2872519 Challacombe,J.F.,_Bruce,D.,_Detter,J.C.,_Green,L.,_Land,M.,_Munk,C.,_Lindler,L.E.,_Nikolich,M.P._and_Brettin,T. NA 0:1359 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_was_derived_from_CP001048.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4001066The_authors_wish_to_acknowledge_the_Intelligence_TechnologyInnovation_Center_for_funding_the_sequencing._For_more_informationabout_this_strain_contact_Mikeljon_Nikolich,_Division_ofCummunicable_Diseases_and_Immunology,_Department_of_Bacterialdiseases,_Walter_Reed_Army_Institute_of_Research,_Silver_Spring,_MD(Mikeljon.Nikolich@NA.AMEDD.ARMY.MIL)Source_DNA_and_bacteria_available_from_Mikeljon_Nikolich(Mikeljon.Nikolich@NA.AMEDD.ARMY.MIL)Contacts:_Mikeljon_Nikolich_(Mikeljon.Nikolich@NA.AMEDD.ARMY.MIL)_David_Bruce_(microbes@cuba.jgi-psf.org)Quality_assurance_done_by_JGI-StanfordAnnotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).COMPLETENESS:_full_length. NA 27-JAN-2012 Yersinia_pseudotuberculosis_PB1/+_chromosome,_complete_genome. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Yersinia_pseudotuberculosis_B2K793_YERPB.gb Yersinia_van_Loghem_1944 186893344 Unpublished NA NC_010634 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1359 NA genomic_DNA NA PB1/+ NA Yersinia_pseudotuberculosis_(Pfeiffer_1889)_Smith_and_Thal_1965_(Approved_Lists_1980) NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 502801 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Yersinia Complete_sequence_of_chromosome_of_Yersinia_pseudotuberculosis_PB1/+ NA NC_010634.1 ATGCAAACATTACCATCGGAAAAAATCAGGATGGACGATGTCCCCCTAAATCGCTTCCATATAAGAATTGCCGGGCTAACTTTTGGCGCACACTTTATCGATGGCTATATCTTAGGTCTGATTGGCTTTGCATTAATTCAACTCAAACCCATAATGGCACTTACACCATTATGGGAGGGATTACTCGGATCAGCCGCGCTGATCGGGCTATTTCTAGGCAGCCTAATATTAGGCTGGATCTCAGATTACATTGGCCGCCAGAAAATTTTTAGTTTCAGTTTTGTCATCATTACCTTAGCCTCAGCACTGCAATTTTTTGCCAGTACACCAGAACAGTTATTTATTTTGCGGGTCATCGTTGGTATTGGTATCGGTGGCGATTACTCGGTGGGACATACTTTATTAGCTGAATTTTCACCACGAAAACATCGCGGGGTCTTATTGGGCGCATTCAGTGTCATTTGGACCTTTGGCTATGTTAGTGCCAGTTTCGTTGGACATTATCTGAGTATGGTCAGCCCCGAGGCTTGGCGTTGGTTGTTATCTTCTGCCGCCCTGCCCGCTTTACTTATTCTCCTGGTACGGATTGGTACGCCGGAGTCACCGCGCTGGCTAATGGGAAAAGGTCGTGAGGACGATGCCATGACCATTGTGCATAAGTACTTTGGCCCGAACGTAACGTTGATTGATGAGGAACCCGCGACTTCCACCCGCCGTTTTCTGTCTTTATTTGGCCGTAAATACTGGCGACGTACCGCTTTTAATAGCTTATTTTTTGTTTGTCTGGTGATCCCCTACTTCGCGATCTATACCTTTTTACCCTCGATTCTTAACGTGATGGCGTTGAGCCAGAATTTTGCTACCGACTTGTTATTGAACGGCTTGCTCGTGGTGGGTGCTTTAGTCGGTATTGTCCTGACTGCATTCTGCTCGCGCCGTAGCTTCCTGATCTCTTCCTTTATTTTCCTGGCTACCTGCCTACTCTTGCTGAGCATACTGCCTTCCAATCAAACATTTTGGCTGATTGCACTCTTCGCGGCTTTTACTCTTGTGATGTCTGCCGTCAGTAACCTAGTCGGTGTGTTCCCGGCCGAGAGTTTCCCGACCGAAGTACGCTCAATGGGGGTGGGATTTGCGACTTCCATGAGTCGCTTGGGATCAGCTATTGGTACCAGCCTGCTGCCATTAGCCATTGTCAATTATGGAATGCCCGTAACCACCACCCTCTTGGCATTCGTTTTAATTATTGGAGCCATTGTTTCTATCGCTTGGGCACCGGAAACGAAAGGACTCACCCTCGTTGATGCCTCACAATCAGCAACCACACCACGCCCACCGTCCAGCATTATTCCAAACTGA > 1194 yrohd0001_18410 similar_to_shikimate_transporter_PRK09952;_similar_to_Major_facilitator_family_transporter_of_Proteobacteria_UniRef_RepID=B1LPT3_ECOSM Major_facilitator_family_transporter EEQ02353.1 11 MTSINSSLADSAPSESAAAEERLATPEGRKDFWRATFSCWLGTAMEYADFALYGLAAGIIFGDVFFPEATPAIALLSSFATYSVGFIARPIGALLFGRLGDRKGRKVVMITTISLMGASTTMIGLIPSYASIGLWAPACLAFLRFMQGLGAGAELSGGAVMLGEYAPTKRRGLVSSIIALGSNSGTLLAALVWLLVLQMDKQTLLDWGWRIPFLSSILIAGAALFIRRHMRESPVFERQKLVLEQQRAAALALGRSHMAEVDNRTFWQRSKSFWIMVGLRIGENGPSYLAQGFMIGYVAKVLMVDKSVPTMAVFIASCLGFLIIPLAGYLSDRFGRRITYRWFCLLLIIYAFPAFMLLETREPILVMGTIIVGMGLASLGIFGVQAAWGVELFGVTNRYTKMAVAKELGSILSGGTAPLIAAAMLTYTGHWWPIALYFAVMAAIGFVTTFFAPETRGRDLNLPEDAI gamma_subgroup Yersinia_rohdei_ATCC_43380 Yersinia_rohdei_ATCC_43380 ACCD01000017 77017..78420 Read,T.D.,_Akmal,A.,_Bishop-Lilly,K.,_Chen,P.E.,_Cook,C.,_Kiley,M.P.,_Lentz,S.,_Mateczun,A.,_Nagarajan,N.,_Nolan,N.,_Osborne,B.I.,_Pop,M.,_Sozhamannan,S.,_Stewart,A.C.,_Sulakvelidze,A.,_Thomason,B.,_Willner,K._and_Zwick,M.E. NA 0:1404 Genome_coverage:_23.6X. NA 01-JUN-2009 Yersinia_rohdei_ATCC_43380_contig00209,_whole_genome_shotgun_sequence. NA gamma-3_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Yersinia_rohdei_C4UW90_YERRO.gb Yersinia_van_Loghem_1944 238710062 Unpublished NA ACCD01000017 NA NA gamma-3_proteobacteria purple_photosynthetic_bacteria_and_relatives NA 1404 NA genomic_DNA 527004 ATCC_43380 NA Yersinia_rohdei_Aleksic_et_al._1987 NA forward NA NA NA NA NA NA NA NA NA NA prokaryotes NA 527004 Bacteria,_Proteobacteria,_Gammaproteobacteria,_Enterobacteriales,_Enterobacteriaceae,_Yersinia Annotation_of_the_Yersinia_rohdei_ATCC_43380_genome NA ACCD01000017.1 ATGACTTCAATCAATAGTTCGCTAGCAGATAGTGCTCCATCAGAGAGCGCAGCTGCAGAAGAGCGCCTGGCGACGCCCGAAGGTCGAAAAGACTTTTGGCGCGCCACCTTTTCATGCTGGCTTGGCACCGCTATGGAGTATGCAGATTTTGCACTCTATGGTTTGGCTGCTGGCATCATATTTGGTGATGTCTTCTTCCCTGAAGCGACACCGGCTATTGCCTTGTTATCCAGTTTTGCTACTTATTCCGTCGGCTTTATTGCCCGGCCGATTGGCGCTCTGTTGTTCGGCAGACTCGGCGATCGCAAGGGCCGTAAAGTGGTGATGATTACCACCATTTCATTGATGGGCGCGTCTACCACGATGATTGGCTTAATCCCAAGCTATGCCTCTATTGGTTTGTGGGCACCGGCTTGTCTGGCATTTTTGCGCTTTATGCAAGGGCTGGGCGCAGGTGCTGAACTGTCGGGCGGGGCGGTGATGCTGGGGGAATATGCGCCAACCAAAAGGCGAGGTCTGGTTTCTTCCATTATTGCCTTGGGCTCTAACAGTGGCACGCTACTGGCAGCCTTAGTGTGGTTATTGGTATTGCAGATGGACAAACAAACGCTGCTCGACTGGGGTTGGCGTATTCCGTTCCTTTCCAGCATCTTAATTGCCGGTGCCGCACTCTTTATTCGCCGTCATATGCGCGAAAGCCCGGTGTTTGAGCGCCAAAAATTAGTGCTGGAACAACAGCGTGCAGCAGCACTGGCTCTTGGTCGCAGCCATATGGCAGAAGTGGATAACCGCACTTTCTGGCAGCGCAGTAAGTCGTTCTGGATTATGGTTGGCTTGCGTATCGGCGAGAACGGCCCGTCTTATCTGGCGCAAGGTTTTATGATTGGTTATGTCGCCAAAGTGCTGATGGTGGACAAGTCGGTGCCCACCATGGCGGTATTTATCGCCTCCTGCCTGGGCTTTTTGATTATTCCATTAGCGGGCTATCTGTCAGACCGCTTTGGTCGTCGAATTACCTACCGCTGGTTCTGTTTATTGTTAATAATCTATGCTTTCCCGGCATTTATGCTGCTAGAAACTCGTGAGCCTATTCTGGTTATGGGGACTATAATCGTCGGTATGGGTCTGGCATCCTTAGGTATCTTTGGCGTGCAGGCAGCATGGGGTGTTGAGCTGTTTGGGGTGACTAATCGCTATACTAAAATGGCGGTAGCAAAAGAGTTAGGGTCAATTCTGTCCGGTGGTACTGCACCACTGATTGCTGCGGCAATGTTGACATATACCGGCCATTGGTGGCCAATTGCCTTATACTTCGCCGTGATGGCCGCCATTGGCTTTGTCACCACTTTCTTTGCTCCTGAGACACGTGGACGTGACCTCAACTTGCCAGAAGATGCGATTTAA > 1195 ZPR_0919 NA major_facilitator_superfamily_permease_sugar_transporter YP_003583462.1 11 MRIFYKLLKYKFLIFSRLNYHFDKNGYILKNFNFYFNRMNKIVLWSLCAAFAGFLFGFDTVVISGAEKQLQQIWHSSDAFHGTYVIGMALWGTVAGAVFGGIPTNALGRKKSLFFIGILYVISALGSALVDDPITFGIFRFIGGLGVGASTIAAPAYISEIAPEKDRGRLVAFYQFNIVLGMLAAYASNYLLRDSGSEPWRWMVGMEALPALIYTFLVLVIPQSPRWLIAQGKIEKARSILSKIDTSKNLDDKIAEIKRQADHGKSSHETIFMKKYRKPLILAFLIAFFNQFSGINALLYYAPRIFEEAGLEESASLLSSIGVGVTNIIFTFMALFLIDRLGRRTLMFIGSIGYIISLSMVSAAFFLDWGGMSVPIFIFIFIAAHAIGQGSVIWVFISEIFPNHLRASGQAFGSSTHWVLAAIIPSLVPVLFGSIGPGWVFACFAFMMVLQLLYVKFMMPETKGKSLEDLGLGLSAAEE not_Flavobacteria_Cavalier-Smith_2002 Zunongwangia_profunda_SM-A87 Zunongwangia_profunda_SM-A87 NC_014041 1004984..1006423 Qin,Q.L.,_Zhang,X.Y.,_Wang,X.M.,_Liu,G.M.,_Chen,X.L.,_Xie,B.B.,_Dang,H.Y.,_Zhou,B.C.,_Yu,J._and_Zhang,Y.Z. NA 0:1440 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001650.COMPLETENESS:_full_length. NA 21-NOV-2011 Zunongwangia_profunda_SM-A87_chromosome,_complete_genome. NA Myroidaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Zunongwangia_profunda_D5BH92_ZUNPS.gb Zunongwangia_corrig._Qin_et_al._2007 295131884 BMC_Genomics_11_(1),_247_(2010) NA NC_014041 NA NA Flavobacteriales Cytophaga-Flexibacter-Bacteroides_phylum 20398413 1440 NA genomic_DNA NA SMA-87 NA Zunongwangia_profunda_corrig._Qin_et_al._2007 NA complement NA NA NA NA NA NA NA NA NA NA prokaryotes Cytophagales/Green_sulfur_bacteria_group 655815 Bacteria,_Bacteroidetes,_Flavobacteriia,_Flavobacteriales,_Flavobacteriaceae,_Zunongwangia The_complete_genome_of_Zunongwangia_profunda_SM-A87_reveals_its_adaptation_to_the_deep-sea_environment_and_ecological_role_in_sedimentary_organic_nitrogen_degradation NA NC_014041.1 TTATTCTTCTGCTGCAGATAATCCCAGGCCTAAGTCTTCCAGAGATTTGCCTTTGGTTTCTGGCATCATAAATTTCACATACAACAATTGCAAAACCATCATAAATGCAAAGCAGGCAAAAACCCATCCCGGACCAATACTACCAAATAAAACGGGAACCAGTGAAGGGATGATGGCGGCCAGTACCCAATGAGTAGACGATCCAAAAGCCTGTCCACTCGCACGTAGGTGATTAGGGAAAATTTCAGAAATAAAAACCCAAATAACCGAGCCCTGTCCAATAGCATGAGCGGCGATAAAAATAAAGATAAAGATAGGTACACTCATGCCGCCCCAATCTAAAAAGAAAGCGGCAGATACCATGGATAAAGAAATAATGTAGCCTATAGAACCTATAAACATTAAAGTACGTCGCCCTAAGCGATCGATTAAAAATAAGGCCATGAAGGTGAAAATAATATTGGTTACACCAACACCAATACTGCTAAGCAGAGAAGCACTTTCTTCTAAACCAGCTTCTTCAAAAATCCTTGGGGCGTAATAGAGAAGAGCGTTAATTCCCGAGAACTGGTTGAAAAAGGCAATAAGAAAAGCTAATATCAAAGGTTTACGATACTTTTTCATAAAAATGGTTTCATGACTGGATTTTCCATGATCGGCTTGCCGCTTAATTTCAGCAATCTTATCGTCTAAGTTTTTAGAAGTATCAATTTTCGATAAAATACTTCGAGCTTTTTCAATTTTACCCTGTGCGATTAACCAACGGGGGCTTTGCGGGATAACCAGTACTAAAAAAGTATAAATTAATGCTGGCAAAGCTTCCATACCTACCATCCAACGCCAGGGTTCGCTACCGCTATCTCGTAAAAGATAATTCGACGCATAAGCCGCAAGCATTCCTAATACAATATTGAACTGATAGAAAGCAACCAGGCGACCCCGGTCTTTTTCAGGAGCGATTTCAGAAATATAAGCTGGTGCCGCGATGGTGGAAGCTCCAACTCCCAATCCGCCAATAAATCTGAAAATCCCGAAAGTAATAGGGTCATCTACCAAAGCAGATCCTAATGCAGAAATTACATATAATATCCCAATAAAAAATAAACTCTTTTTTCTTCCCAGGGCATTGGTAGGAATACCTCCAAAAACCGCTCCGGCTACCGTGCCCCACAATGCCATACCAATTACATAGGTGCCATGAAACGCATCAGAGCTATGCCAGATTTGTTGCAATTGCTTTTCAGCTCCCGAAATTACTACGGTATCAAAACCAAATAGAAATCCTGCAAATGCGGCACAAAGTGACCAGAGTACTATTTTATTCATTCTGTTAAAATAAAAATTAAAATTTTTGAGAATATAGCCATTTTTATCGAAATGATAATTTAATCTTGAAAATATCAGGAATTTGTATTTCAGAAGTTTATAAAAAATACGCAA > 1196 ZYRO0D13310g NA hypothetical_protein XP_002497012.1 NA MVLYAYAWKPRCRAAEAQLIKFLENFPQKHLGAYLYINASNERIISFSYGELLTTPNTMSDCSTIYRTPTNRSRDETIEYSSNYSHFSQKLTPEKSEHLEIDSIPSTEKGSVTNHWSIICSCLMIAFGGFVFGWDTGTISGFINMTDFKRRFGHWDSTNEEFQLSEARMGLIVSVFNVGCAIGGFTLGRLGDIYGRREGLMCSVLVYVVGIVVQIASINTWYQYFFGRILSGLGVGSLSVLSPTLISEISPKQLRGTCVSFYQLMITLGIFLGYCTDYGTKFYANSVQWRVPLGLCFLWAIFMLVGLMVVPESPRFLLEKGFKEEAIQSVSRLNKLPQDHPTVIEELESINAAIEVGRLEGEASWKELFSNRGQIFRRVKIGAMILSLQQLTGNNYFFYYGTTIFRTIGLDDSFETSIILGVINLVSTFVALWTVDRFGRRKSLLTGSLAMSACFLIFASVGVTKLWPHGRDEPSSKPAGNAMVAFACLFIFSFATTWAPTAYVIVSETYPLRVKNRAMAIAVGCDKMWGFLIGFLTPFITSSIHFYYGYVFLGCLIFSFFYVFFFVCETKGLTLEEVNEMYEEGTKAWHSSNWTPQSQRLDFVDEYALYKNSDFI Saccharomycetes Zygosaccharomyces_rouxii_CBS_732 Zygosaccharomyces_rouxii_CBS_732 XM_002496967 NA NA NA 0:1851 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_012993).COMPLETENESS:_incomplete_on_both_ends. NA 22-JUL-2009 Zygosaccharomyces_rouxii_hypothetical_protein_(ZYRO0D13310g)_mRNA,_complete_cds. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Zygosaccharomyces_rouxii_C5DWB0_ZYGRC.gb Zygosaccharomyces 254582053 Unpublished fungi XM_002496967 NA NA budding_yeasts sac_fungi NA 1851 D mRNA NA CBS_732 NA Zygosaccharomyces_rouxii NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 559307 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Zygosaccharomyces Comparative_genomics_of_protoploid_Saccharomycetaceae NA XM_002496967.1 ATGGTACTCTACGCATATGCATGGAAACCGAGGTGTCGCGCGGCTGAAGCGCAACTGATAAAGTTTCTAGAAAACTTTCCACAGAAACATCTTGGCGCTTATCTATATATAAATGCGTCAAATGAAAGAATAATATCATTCTCTTACGGAGAACTATTGACTACACCGAACACCATGTCCGATTGCAGTACAATTTATCGTACGCCAACTAATCGTAGCCGTGATGAAACCATCGAATACTCCTCTAACTATTCGCACTTTTCTCAGAAATTGACACCTGAAAAGAGTGAGCACTTAGAGATAGATAGCATTCCTTCCACTGAGAAAGGGTCCGTAACAAACCACTGGTCTATAATCTGTTCATGCCTCATGATTGCATTTGGAGGGTTCGTCTTTGGATGGGATACGGGTACCATTTCAGGCTTTATCAACATGACAGATTTTAAAAGAAGGTTTGGACATTGGGATAGTACAAACGAGGAGTTCCAATTATCAGAAGCAAGAATGGGGTTAATTGTATCCGTTTTCAATGTAGGTTGTGCCATTGGGGGATTTACATTAGGTCGTCTGGGTGACATTTACGGTAGGCGTGAGGGACTCATGTGTTCAGTATTGGTGTATGTTGTGGGGATAGTTGTCCAGATCGCTTCAATAAATACATGGTACCAGTATTTCTTTGGTAGGATTTTATCAGGTCTAGGCGTAGGCAGTTTATCGGTATTGTCCCCGACACTGATATCTGAAATCTCTCCGAAACAATTGAGAGGTACTTGTGTCTCTTTTTACCAATTGATGATTACATTGGGGATATTTCTAGGCTACTGTACTGATTATGGTACCAAGTTCTATGCAAACTCCGTTCAGTGGAGGGTACCTCTAGGGTTGTGTTTCTTGTGGGCAATCTTTATGTTGGTAGGATTAATGGTGGTTCCTGAATCACCAAGATTCTTATTAGAGAAAGGATTTAAAGAGGAGGCAATTCAGTCAGTATCTAGATTGAACAAACTACCTCAAGATCACCCCACGGTCATTGAAGAACTAGAATCCATCAATGCCGCCATTGAAGTAGGACGACTAGAGGGCGAAGCCTCTTGGAAGGAATTGTTCTCCAACAGAGGACAGATTTTCAGAAGAGTAAAGATAGGAGCTATGATCCTATCGCTACAACAATTAACGGGGAACAATTACTTCTTCTATTATGGTACAACTATCTTCCGAACCATAGGACTAGATGATTCTTTTGAAACTTCCATCATCTTAGGTGTGATAAATCTCGTCTCTACTTTCGTAGCACTTTGGACAGTAGACAGATTTGGCCGTCGTAAAAGTCTACTGACAGGTTCCCTTGCCATGTCGGCATGCTTTCTGATCTTTGCATCTGTGGGGGTTACCAAGTTGTGGCCTCACGGTAGAGACGAACCATCCTCCAAACCTGCCGGGAACGCTATGGTTGCATTCGCCTGCCTGTTCATCTTCAGCTTTGCCACCACTTGGGCCCCCACCGCCTACGTGATAGTGTCTGAGACTTATCCATTGCGTGTGAAAAACCGTGCGATGGCCATTGCAGTAGGTTGTGACAAGATGTGGGGATTTCTCATTGGGTTTTTGACACCTTTCATTACAAGTTCTATCCATTTCTACTATGGGTACGTCTTTTTGGGTTGCCTAATCTTCTCATTCTTCTACGTCTTCTTCTTTGTATGTGAGACTAAAGGTCTTACCTTGGAAGAGGTAAACGAGATGTATGAAGAAGGAACTAAAGCTTGGCACTCTAGCAATTGGACCCCACAAAGCCAGCGACTCGATTTCGTTGACGAATATGCTTTGTATAAGAACAGCGACTTTATATAA > 1197 ZYRO0E01210g NA hypothetical_protein XP_002498999.1 NA MGKRTQGFMDYVFSRTSTAGLKGARLRYTAAAVAVIGFALFGYDQGLMSGLITGDQFNKEFPPTKSNGDNDRYASVIQGAVTACYEIGCFFGSLFVLFFGDAIGRKPLIIFGAIIVIIGTVISTAPFHHAWGLGQFVVGRVITGVGTGFNTSTIPVWQSEMTKPNIRGAMINLDGSVIAFGTMIAYWLDFGFSFINSSVQWRFPVSVQIIFALVLLFGIVRMPESPRWLMAKKRPAEARYVLACLNDLPENDDAILAEMTSLHEAVNRSSNQKSQMKSLFSMGKQQNFSRALIASSTQFFQQFTGCNAAIYYSTVLFQTTVQLDRLLAMILGGVFATVYTLSTLPSFYLVEKVGRRKMFFFGALGQGISFIITFACLVNPTKQNAKGAAVGLYLFIICFGLAILELPWIYPPEIASMRVRAATNAMSTCTNWVTNFAVVMFTPVFIQTSQWGCYLFFAVMNFIYLPVIFFFYPETAGRSLEEIDIIFAKAHVDGTLPWMVAHRLPKLSMTEVEDYSQSLGLHDDENEKEEYDEKEAEANAALFQVETSSKSPSSNRKDDDAPIEHNEVQESNDNSSNSSNVEAPIPVHHNDP Saccharomycetes Zygosaccharomyces_rouxii_CBS_732 Zygosaccharomyces_rouxii_CBS_732 XM_002498954 NA NA NA 0:1779 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._This_record_is_derived_from_an_annotated_genomicsequence_(NC_012994).COMPLETENESS:_incomplete_on_both_ends. NA 22-JUL-2009 Zygosaccharomyces_rouxii_hypothetical_protein_(ZYRO0E01210g)_mRNA,_complete_cds. NA Saccharomycetaceae /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Zygosaccharomyces_rouxii_C5E3Y3_ZYGRC.gb Zygosaccharomyces 254582534 Unpublished fungi XM_002498954 NA NA budding_yeasts sac_fungi NA 1779 E mRNA NA CBS_732 NA Zygosaccharomyces_rouxii NA forward NA NA NA Dikarya NA Saccharomycotina NA NA NA NA eukaryotes NA 559307 Eukaryota,_Fungi,_Dikarya,_Ascomycota,_Saccharomycotina,_Saccharomycetes,_Saccharomycetales,_Saccharomycetaceae,_Zygosaccharomyces Comparative_genomics_of_protoploid_Saccharomycetaceae NA XM_002498954.1 ATGGGTAAAAGAACACAAGGTTTCATGGACTATGTATTCAGCAGAACTAGTACAGCTGGTCTCAAAGGTGCGAGACTCAGATATACGGCAGCAGCTGTCGCTGTTATTGGATTTGCACTTTTCGGTTATGATCAAGGTTTGATGTCAGGTCTTATTACTGGTGATCAGTTCAACAAAGAATTTCCACCAACGAAATCAAACGGTGATAATGATCGTTATGCTAGTGTTATTCAAGGTGCAGTTACCGCTTGTTACGAAATTGGATGTTTTTTCGGTTCACTGTTTGTTCTTTTCTTTGGTGACGCTATTGGTAGAAAACCATTGATTATTTTTGGCGCTATAATTGTCATTATTGGGACTGTTATTTCTACAGCACCTTTCCACCACGCTTGGGGTTTGGGTCAATTTGTTGTTGGTCGTGTTATTACTGGTGTTGGTACAGGTTTCAACACTTCTACTATTCCAGTGTGGCAATCTGAAATGACGAAACCAAATATTAGAGGTGCAATGATTAATTTGGATGGTTCTGTTATTGCTTTTGGTACTATGATTGCTTACTGGCTTGATTTTGGATTTTCCTTTATTAATTCAAGTGTTCAATGGAGATTTCCAGTTTCTGTTCAAATTATATTTGCTTTAGTTTTATTGTTCGGTATCGTTAGAATGCCAGAATCACCACGTTGGTTAATGGCAAAGAAAAGACCCGCAGAAGCTCGTTACGTGTTAGCTTGTTTGAATGATTTACCCGAGAATGACGATGCAATTTTAGCTGAAATGACATCTTTACACGAAGCTGTCAACAGATCTTCGAACCAAAAATCTCAGATGAAATCATTGTTCTCTATGGGTAAGCAACAAAATTTTAGCCGTGCGTTGATTGCATCTTCTACCCAATTTTTCCAACAATTTACTGGTTGTAATGCTGCCATTTACTATTCTACCGTTTTGTTTCAAACTACTGTTCAATTGGACCGTTTACTTGCAATGATTCTAGGTGGTGTCTTTGCAACTGTCTACACTTTATCTACATTGCCATCATTTTACTTGGTCGAAAAAGTTGGTCGTCGTAAGATGTTTTTCTTTGGTGCATTGGGTCAAGGTATTTCATTCATCATCACATTTGCTTGTTTGGTTAATCCAACAAAGCAGAATGCAAAGGGTGCCGCTGTTGGTTTATATTTATTCATTATATGTTTTGGTTTGGCAATCCTAGAATTACCATGGATTTATCCACCTGAAATTGCATCAATGAGGGTTCGTGCAGCTACTAATGCCATGTCAACCTGTACTAATTGGGTTACCAATTTTGCAGTTGTTATGTTTACACCAGTTTTCATTCAAACTTCTCAATGGGGGTGTTACCTGTTCTTCGCGGTTATGAATTTCATCTATTTGCCAGTTATCTTTTTCTTCTACCCAGAAACCGCCGGTAGGTCGTTGGAAGAAATCGATATTATTTTTGCCAAGGCCCATGTCGATGGTACATTACCATGGATGGTTGCTCATCGTTTGCCCAAGTTATCAATGACTGAAGTTGAAGACTACTCACAATCCTTGGGTCTTCATGATGATGAAAATGAAAAGGAGGAATACGATGAGAAGGAAGCTGAGGCAAATGCTGCTTTGTTCCAAGTGGAAACTAGTTCTAAATCACCATCATCTAATCGTAAAGATGATGATGCACCAATTGAACATAATGAAGTTCAAGAATCAAATGATAATTCATCAAACAGCTCTAATGTGGAAGCACCAATTCCAGTACATCATAACGATCCTTAA > 1198 Za10_0874 TIGRFAM:_sugar_transporter;_PFAM:_general_substrate_transporter;_major_facilitator_superfamily_MFS_1;_KEGG:_sew:SeSA_A4418_D-xylose-proton_symporter sugar_transporter YP_003226004.1 11 MSSESSQGLVTRLALIAAIGGLLFGYDSAVIAAIGTPVDIHFIAPRHLSATAAASLSGMVVVAVLVGCVTGSLLSGWIGIRFGRRGGLLMSSICFVAAGFGAALTEKLFGTGGSALQIFCFFRFLAGLGIGVVSTLTPTYIAEIAPPDKRGQMVSGQQMAIVTGALTGYIFTWLLAHFGSIDWVNASGWCWSPASEGLIGIAFLLLLLTAPDTPHWLVMKGRHSEASKILARLEPQADPNLTIQKIKAGFDKAMDKSSAGLFAFGITVVFAGVSVAAFQQLVGINAVLYYAPQMFQNLGFGADTALLQTISIGVVNFIFTMIASRVVDRFGRKPLLIWGALGMAAMMAVLGCCFWFKVGGVLPLASVLLYIAVFGMSWGPVCWVVLSEMFPSSIKGAAMPIAVTGQWLANILVNFLFKVADGSPALNQTFNHGFSYLVFAALSILGGLIVARFVPETKGRSLDEIEEMWRSQK alpha_subgroup Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 NC_013355 998682..1000103 Kouvelis,V.N.,_Saunders,E.,_Brettin,T.S.,_Bruce,D.,_Detter,C.,_Han,C.,_Typas,M.A._and_Pappas,K.M. NA 0:1422 PROVISIONAL_REFSEQ:_This_record_has_not_yet_been_subject_to_finalNCBI_review._The_reference_sequence_is_identical_to_CP001722.URL_--_http://www.jgi.doe.govJGI_Project_ID:_4084589Source_DNA_available_from_Katherine_M._Pappas(kmpappas@biol.uoa.gr)Organism_available_from_NCIMB:_NCIMB_11163Contacts:_Katherine_M._Pappas_(kmpappas@biol.uoa.gr)_David_Bruce_(microbe@cuba.jgi-psf.org)Annotation_done_by_JGI-ORNL_and_JGI-PGFFinishing_done_by_JGI-LANLFinished_microbial_genomes_have_been_curated_to_close_all_gaps_withgreater_than_98%_coverage_of_at_least_two_independent_clones._Eachbase_pair_has_a_minimum_q_(quality)_value_of_30_and_the_total_errorrate_is_less_than_one_per_50000.The_JGI_and_collaborators_endorse_the_principles_for_thedistribution_and_use_of_large_scale_sequencing_data_adopted_by_thelarger_genome_sequencing_community_and_urge_users_of_this_data_tofollow_them._it_is_our_intention_to_publish_the_work_of_thisproject_in_a_timely_fashion_and_we_welcome_collaborativeinteraction_on_the_project_and_analysis.(http://www.genome.gov/page.cfm?pageID=10506376).##Metadata-START##Organism_Display_Name_::_Zymomonas_mobilis_NCIB_11163Culture_Collection_ID_::_NCIB_11163GOLD_Stamp_ID_::_Gi02101Greengenes_ID_::_50955Isolation_Site_::_Spoiled_beerOxygen_Requirement_::_Facultativecell_Shape_::_Rod-shapedMotility_::_MotileTemperature_Range_::_MesophileGram_Staining_::_gram-Biotic_Relationship_::_Free_livingDiseases_::_NonePhenotypes_::_Ethanol_production##Metadata-END##COMPLETENESS:_full_length. NA 25-JAN-2012 Zymomonas_mobilis_subsp._mobilis_NCIMB_11163_chromosome,_complete_genome. NA alpha-4_proteobacteria /home/erin/DOE/DOE_Testing/conceptProof_files/Sugar_tr_Zymomonas_mobilis_C8WCI4_ZYMMN.gb Zymononas 260752245 J._Bacteriol._191_(22),_7140-7141_(2009) NA NC_013355 NA NA Sphingomonadales purple_photosynthetic_bacteria_and_relatives 19767433 1422 NA genomic_DNA NA NCIB_11163 NA Zymononas_mobilis NA complement NA NA NA NA NA NA Zymomonas_mobilis_subsp._mobilis_(Lindner_1928)_Kluyver_and_van_Niel_1936 NA NA NA prokaryotes NA 622759 Bacteria,_Proteobacteria,_Alphaproteobacteria,_Sphingomonadales,_Sphingomonadaceae,_Zymomonas Complete_genome_sequence_of_the_ethanol_producer_Zymomonas_mobilis_NCIMB_11163 NA NC_013355.1 CTACTTCTGGGAGCGCCACATCTCCTCGATTTCATCCAGGCTCCGACCTTTGGTTTCCGGCACGAAGCGAGCAACAATCAAGCCACCTAAGATACTTAATGCTGCGAAAACGAGATAGGAGAAACCGTGGTTGAAAGTCTGATTCAATGCTGGAGAACCATCGGCAACCTTAAACAGGAAGTTAACCAAGATATTAGCTAACCATTGTCCGGTAACAGCGATAGGCATAGCTGCACCCTTGATGGAACTCGGGAACATTTCTGACAGAACAACCCAGCAGACAGGGCCCCATGACATACCAAAGACTGCAATATAAAGAAGCACAGAAGCCAAAGGCAAAACACCACCGACTTTGAACCAGAAACAGCAGCCTAAAACAGCCATCATTGCAGCCATACCGAGGGCACCCCAAATAAGCAGAGGTTTACGGCCGAAGCGGTCAACAACACGGGAAGCAATCATGGTGAAGATGAAGTTCACAACACCGATAGAGATGGTCTGCAATAATGCCGTATCAGCTCCAAAACCTAAATTCTGGAACATCTGCGGTGCATAATACAGCACGGCGTTAATACCGACCAACTGCTGGAAGGCAGCAACGGATACACCGGCAAAAACAACGGTGATACCAAAAGCAAACAAACCTGCGCTGCTTTTGTCCATGGCTTTATCAAAGCCAGCTTTAATCTTTTGAATCGTCAGATTAGGATCGGCTTGCGGTTCCAGACGAGCAAGGATTTTGCTAGCCTCGGAATGACGTCCCTTCATCACCAACCAATGCGGCGTATCCGGTGCGGTTAACAGCAGCAATAAGAAGGCAATACCGATCAGGCCTTCTGAAGCCGGAGACCAGCACCAACCGCTGGCATTAACCCAATCGATAGAACCGAAATGAGCCAGTAACCAGGTAAAGATATAACCGGTTAAAGCACCCGTCACAATGGCCATCTGCTGACCAGAAACCATCTGACCGCGTTTGTCTGGCGGAGCAATTTCAGCAATATAGGTTGGGGTCAAGGTTGAAACGACACCGATACCTAAACCGGCAAGAAACCGGAAAAAGCAAAAAATTTGTAAAGCCGAACCACCGGTTCCAAATAATTTTTCGGTTAACGCAGCACCAAAACCGGCGGCGACGAAACAAATGGAACTCATCAACAATCCGCCGCGACGACCGAAGCGAATACCAATCCAGCCAGACAGCAAAGAACCGGTAACACAACCGACCAAAACAGCAACAACGACCATCCCAGAAAGGGAAGCCGCAGCCGTAGCAGACAGGTGACGAGGGGCAATAAAATGGATATCAACCGGTGTACCGATTGCAGCGATAACCGCTGAATCGTAACCGAAAAGCAAGCCGCCTATAGCAGCGATTAGGGCTAGTCGCGTGACTAGACCCTGACTACTTTCAGAACTCAT